SH08_RS00015 SM01234 SH08_RS00015 SH08_RS00110 SM01061 CAT RNA binding domain SH08_RS00120 SM00382 ATPases associated with a variety of cellular activities SH08_RS00160 SM00382 ATPases associated with a variety of cellular activities SH08_RS00205 SM01228 SH08_RS00205 SH08_RS00215 SM00344 helix_turn_helix ASNC type SH08_RS00225 SM00327 von Willebrand factor (vWF) type A domain SH08_RS00230 SM00382 ATPases associated with a variety of cellular activities SH08_RS00245 SM00382 ATPases associated with a variety of cellular activities SH08_RS00265 SM00354 helix_turn _helix lactose operon repressor SH08_RS00275 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS00275 SM00895 SH08_RS00275 SH08_RS00320 SM00382 ATPases associated with a variety of cellular activities SH08_RS00385 SM00487 DEAD-like helicases superfamily SH08_RS00385 SM00490 helicase superfamily c-terminal domain SH08_RS00400 SM00357 Cold shock protein domain SH08_RS00400 SM00382 ATPases associated with a variety of cellular activities SH08_RS00400 SM00959 Rho termination factor, N-terminal domain SH08_RS00425 SM00984 UDP binding domain SH08_RS00530 SM01219 SH08_RS00530 SH08_RS00605 SM00341 Helicase and RNase D C-terminal SH08_RS00605 SM00487 DEAD-like helicases superfamily SH08_RS00605 SM00490 helicase superfamily c-terminal domain SH08_RS00605 SM00956 SH08_RS00605 SH08_RS00695 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SH08_RS00795 SM00563 Phosphate acyltransferases SH08_RS00805 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH08_RS00805 SM00474 3'-5' exonuclease SH08_RS00805 SM00475 5'-3' exonuclease SH08_RS00805 SM00482 DNA polymerase A domain SH08_RS00820 SM00729 Elongator protein 3, MiaB family, Radical SAM SH08_RS00830 SM00382 ATPases associated with a variety of cellular activities SH08_RS00830 SM00448 cheY-homologous receiver domain SH08_RS00835 SM00091 PAS domain SH08_RS00835 SM00387 Histidine kinase-like ATPases SH08_RS00835 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS00840 SM01230 SH08_RS00840 SH08_RS00855 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS00855 SM00866 SH08_RS00855 SH08_RS00900 SM01133 SH08_RS00900 SH08_RS00915 SM00420 helix_turn_helix, Deoxyribose operon repressor SH08_RS00915 SM01134 SH08_RS00915 SH08_RS00975 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS01015 SM01007 Class II Aldolase and Adducin N-terminal domain SH08_RS01035 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS01040 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS01070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS01070 SM00387 Histidine kinase-like ATPases SH08_RS01070 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS01075 SM00448 cheY-homologous receiver domain SH08_RS01075 SM00862 Transcriptional regulatory protein, C terminal SH08_RS01165 SM00382 ATPases associated with a variety of cellular activities SH08_RS01165 SM01086 C-terminal, D2-small domain, of ClpB protein SH08_RS01180 SM00354 helix_turn _helix lactose operon repressor SH08_RS01185 SM00487 DEAD-like helicases superfamily SH08_RS01185 SM00490 helicase superfamily c-terminal domain SH08_RS01285 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS01310 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH08_RS01430 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SH08_RS01430 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH08_RS01435 SM00649 Ribosomal protein L11/L12 SH08_RS01460 SM00663 RNA polymerase I subunit A N-terminus SH08_RS01470 SM00876 Biotin and Thiamin Synthesis associated domain SH08_RS01525 SM00411 bacterial (prokaryotic) histone like domain SH08_RS01540 SM00387 Histidine kinase-like ATPases SH08_RS01540 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS01545 SM00382 ATPases associated with a variety of cellular activities SH08_RS01545 SM00448 cheY-homologous receiver domain SH08_RS01550 SM01209 SH08_RS01550 SH08_RS01550 SM01210 SH08_RS01550 SH08_RS01555 SM00798 AICARFT/IMPCHase bienzyme SH08_RS01555 SM00851 MGS-like domain SH08_RS01620 SM00248 ankyrin repeats SH08_RS01625 SM00346 helix_turn_helix isocitrate lyase regulation SH08_RS01630 SM01018 B12 binding domain SH08_RS01645 SM00363 S4 RNA-binding domain SH08_RS01735 SM00382 ATPases associated with a variety of cellular activities SH08_RS01770 SM00563 Phosphate acyltransferases SH08_RS01820 SM00829 Enoylreductase SH08_RS01825 SM00382 ATPases associated with a variety of cellular activities SH08_RS01830 SM01005 Alanine racemase, C-terminal domain SH08_RS01875 SM00052 Putative diguanylate phosphodiesterase SH08_RS01880 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS01885 SM00422 helix_turn_helix, mercury resistance SH08_RS01950 SM00028 Tetratricopeptide repeats SH08_RS01960 SM00671 Sel1-like repeats. SH08_RS01970 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS01995 SM00849 Metallo-beta-lactamase superfamily SH08_RS02015 SM00382 ATPases associated with a variety of cellular activities SH08_RS02050 SM00072 Guanylate kinase homologues. SH08_RS02060 SM00382 ATPases associated with a variety of cellular activities SH08_RS02065 SM00382 ATPases associated with a variety of cellular activities SH08_RS02090 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS02090 SM00866 SH08_RS02090 SH08_RS02105 SM00382 ATPases associated with a variety of cellular activities SH08_RS02140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS02140 SM00387 Histidine kinase-like ATPases SH08_RS02140 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS02145 SM00448 cheY-homologous receiver domain SH08_RS02145 SM00862 Transcriptional regulatory protein, C terminal SH08_RS02160 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS02170 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS02210 SM00448 cheY-homologous receiver domain SH08_RS02215 SM00091 PAS domain SH08_RS02215 SM00387 Histidine kinase-like ATPases SH08_RS02260 SM00862 Transcriptional regulatory protein, C terminal SH08_RS02305 SM00883 Chaperonin 10 Kd subunit SH08_RS02330 SM00841 Elongation factor P, C-terminal SH08_RS02330 SM01185 SH08_RS02330 SH08_RS02415 SM00479 SH08_RS02415 SH08_RS02450 SM00646 SH08_RS02450 SH08_RS02455 SM00853 MutL C terminal dimerisation domain SH08_RS02455 SM01340 SH08_RS02455 SH08_RS02475 SM00244 prohibitin homologues SH08_RS02480 SM00244 prohibitin homologues SH08_RS02490 SM00788 Adenylosuccinate synthetase SH08_RS02500 SM00316 Ribosomal protein S1-like RNA-binding domain SH08_RS02500 SM00357 Cold shock protein domain SH08_RS02500 SM00955 SH08_RS02500 SH08_RS02505 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH08_RS02560 SM00420 helix_turn_helix, Deoxyribose operon repressor SH08_RS02560 SM01134 SH08_RS02560 SH08_RS02585 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH08_RS02595 SM01007 Class II Aldolase and Adducin N-terminal domain SH08_RS02700 SM01091 Transporter associated domain SH08_RS02730 SM00966 SpoVT / AbrB like domain SH08_RS02750 SM00382 ATPases associated with a variety of cellular activities SH08_RS02800 SM00642 Alpha-amylase domain SH08_RS02810 SM00354 helix_turn _helix lactose operon repressor SH08_RS02815 SM00831 Cation transporter/ATPase, N-terminus SH08_RS02850 SM00822 SH08_RS02850 SH08_RS02920 SM00354 helix_turn _helix lactose operon repressor SH08_RS02945 SM00829 Enoylreductase SH08_RS03050 SM00382 ATPases associated with a variety of cellular activities SH08_RS03070 SM00965 Secretin and TonB N terminus short domain SH08_RS03120 SM01130 SH08_RS03120 SH08_RS03125 SM00346 helix_turn_helix isocitrate lyase regulation SH08_RS03130 SM00420 helix_turn_helix, Deoxyribose operon repressor SH08_RS03130 SM01134 SH08_RS03130 SH08_RS03295 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS03295 SM00895 SH08_RS03295 SH08_RS03390 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS03415 SM00382 ATPases associated with a variety of cellular activities SH08_RS03435 SM00487 DEAD-like helicases superfamily SH08_RS03435 SM00490 helicase superfamily c-terminal domain SH08_RS03455 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH08_RS03475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH08_RS03475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS03475 SM00319 Homologues of the ligand binding domain of Tar SH08_RS03485 SM00895 SH08_RS03485 SH08_RS03490 SM00829 Enoylreductase SH08_RS03505 SM00382 ATPases associated with a variety of cellular activities SH08_RS03525 SM00421 helix_turn_helix, Lux Regulon SH08_RS03530 SM00421 helix_turn_helix, Lux Regulon SH08_RS03585 SM00749 bacterial OsmY and nodulation domain SH08_RS03620 SM01133 SH08_RS03620 SH08_RS03625 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SH08_RS03660 SM00382 ATPases associated with a variety of cellular activities SH08_RS03665 SM00530 Helix-turn-helix XRE-family like proteins SH08_RS03675 SM00382 ATPases associated with a variety of cellular activities SH08_RS03695 SM00855 Phosphoglycerate mutase family SH08_RS03700 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS03700 SM00871 Bacterial transcription activator, effector binding domain SH08_RS03710 SM00448 cheY-homologous receiver domain SH08_RS03710 SM00862 Transcriptional regulatory protein, C terminal SH08_RS03715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS03715 SM00387 Histidine kinase-like ATPases SH08_RS03715 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS03725 SM00448 cheY-homologous receiver domain SH08_RS03725 SM00862 Transcriptional regulatory protein, C terminal SH08_RS03785 SM00852 Probable molybdopterin binding domain SH08_RS03810 SM00271 DnaJ molecular chaperone homology domain SH08_RS03850 SM00904 Riboflavin kinase SH08_RS03895 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SH08_RS03900 SM00851 MGS-like domain SH08_RS03900 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SH08_RS03945 SM00893 Electron transfer flavoprotein domain SH08_RS03950 SM00893 Electron transfer flavoprotein domain SH08_RS03995 SM00650 Ribosomal RNA adenine dimethylases SH08_RS04015 SM00271 DnaJ molecular chaperone homology domain SH08_RS04030 SM00487 DEAD-like helicases superfamily SH08_RS04030 SM00490 helicase superfamily c-terminal domain SH08_RS04035 SM00486 DNA polymerase type-B family SH08_RS04040 SM01007 Class II Aldolase and Adducin N-terminal domain SH08_RS04055 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS04065 SM00382 ATPases associated with a variety of cellular activities SH08_RS04105 SM01329 SH08_RS04105 SH08_RS04110 SM00917 LeuA allosteric (dimerisation) domain SH08_RS04140 SM00354 helix_turn _helix lactose operon repressor SH08_RS04210 SM00842 Cell division protein FtsA SH08_RS04215 SM00864 Tubulin/FtsZ family, GTPase domain SH08_RS04215 SM00865 Tubulin/FtsZ family, C-terminal domain SH08_RS04230 SM00957 SecA DEAD-like domain SH08_RS04230 SM00958 SecA preprotein cross-linking domain SH08_RS04260 SM01240 SH08_RS04260 SH08_RS04290 SM00644 SH08_RS04290 SH08_RS04305 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS04305 SM00895 SH08_RS04305 SH08_RS04360 SM00564 beta-propeller repeat SH08_RS04370 SM00947 Carbonic anhydrase SH08_RS04375 SM00382 ATPases associated with a variety of cellular activities SH08_RS04480 SM00487 DEAD-like helicases superfamily SH08_RS04480 SM00490 helicase superfamily c-terminal domain SH08_RS04480 SM00847 Helicase associated domain (HA2) Add an annotation SH08_RS04515 SM00382 ATPases associated with a variety of cellular activities SH08_RS04560 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH08_RS04565 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH08_RS04590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH08_RS04635 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH08_RS04645 SM00935 Outer membrane protein (OmpH-like) SH08_RS04675 SM00481 DNA polymerase alpha chain like domain SH08_RS04695 SM00977 TilS substrate C-terminal domain SH08_RS04710 SM01322 SH08_RS04710 SH08_RS04755 SM00382 ATPases associated with a variety of cellular activities SH08_RS04755 SM00930 SH08_RS04755 SH08_RS04815 SM00257 Lysin motif SH08_RS04820 SM00849 Metallo-beta-lactamase superfamily SH08_RS04835 SM00479 SH08_RS04835 SH08_RS04910 SM01321 SH08_RS04910 SH08_RS04980 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SH08_RS05095 SM00382 ATPases associated with a variety of cellular activities SH08_RS05130 SM01130 SH08_RS05130 SH08_RS05150 SM00346 helix_turn_helix isocitrate lyase regulation SH08_RS05215 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH08_RS05220 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH08_RS05265 SM00421 helix_turn_helix, Lux Regulon SH08_RS05305 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS05325 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS05380 SM00052 Putative diguanylate phosphodiesterase SH08_RS05380 SM00421 helix_turn_helix, Lux Regulon SH08_RS05395 SM00248 ankyrin repeats SH08_RS05430 SM00829 Enoylreductase SH08_RS05455 SM00382 ATPases associated with a variety of cellular activities SH08_RS05495 SM00947 Carbonic anhydrase SH08_RS05500 SM01116 SH08_RS05500 SH08_RS05510 SM01266 SH08_RS05510 SH08_RS05530 SM00346 helix_turn_helix isocitrate lyase regulation SH08_RS05555 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH08_RS05580 SM00829 Enoylreductase SH08_RS05620 SM00062 Bacterial periplasmic substrate-binding proteins SH08_RS05625 SM00382 ATPases associated with a variety of cellular activities SH08_RS05640 SM01004 Delta-aminolevulinic acid dehydratase SH08_RS05665 SM00869 Autotransporter beta-domain SH08_RS05720 SM00098 Alkaline phosphatase homologues SH08_RS05730 SM00267 diguanylate cyclase SH08_RS05800 SM00448 cheY-homologous receiver domain SH08_RS05800 SM00862 Transcriptional regulatory protein, C terminal SH08_RS05805 SM00091 PAS domain SH08_RS05805 SM00387 Histidine kinase-like ATPases SH08_RS05805 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS05820 SM00642 Alpha-amylase domain SH08_RS05840 SM01323 SH08_RS05840 SH08_RS05855 SM00507 HNH nucleases SH08_RS05910 SM00861 Transketolase, pyrimidine binding domain SH08_RS05925 SM00981 SH08_RS05925 SH08_RS06005 SM00382 ATPases associated with a variety of cellular activities SH08_RS06005 SM00994 ClpX C4-type zinc finger SH08_RS06005 SM01086 C-terminal, D2-small domain, of ClpB protein SH08_RS06010 SM00382 ATPases associated with a variety of cellular activities SH08_RS06010 SM00464 Found in ATP-dependent protease La (LON) SH08_RS06015 SM00411 bacterial (prokaryotic) histone like domain SH08_RS06025 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH08_RS06050 SM00344 helix_turn_helix ASNC type SH08_RS06055 SM00382 ATPases associated with a variety of cellular activities SH08_RS06060 SM00382 ATPases associated with a variety of cellular activities SH08_RS06065 SM00938 Nitrogen regulatory protein P-II SH08_RS06095 SM00052 Putative diguanylate phosphodiesterase SH08_RS06105 SM01266 SH08_RS06105 SH08_RS06165 SM00382 ATPases associated with a variety of cellular activities SH08_RS06175 SM00493 SH08_RS06175 SH08_RS06180 SM00387 Histidine kinase-like ATPases SH08_RS06230 SM00530 Helix-turn-helix XRE-family like proteins SH08_RS06250 SM00422 helix_turn_helix, mercury resistance SH08_RS06260 SM00244 prohibitin homologues SH08_RS06265 SM00382 ATPases associated with a variety of cellular activities SH08_RS06280 SM00822 SH08_RS06280 SH08_RS06290 SM00382 ATPases associated with a variety of cellular activities SH08_RS06325 SM00450 Rhodanese Homology Domain SH08_RS06340 SM00346 helix_turn_helix isocitrate lyase regulation SH08_RS06420 SM01001 AIR carboxylase SH08_RS06435 SM00840 SH08_RS06435 SH08_RS06480 SM00421 helix_turn_helix, Lux Regulon SH08_RS06480 SM00448 cheY-homologous receiver domain SH08_RS06535 SM00857 Resolvase, N terminal domain SH08_RS06545 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS06640 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS06655 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS06665 SM00028 Tetratricopeptide repeats SH08_RS06675 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS06675 SM00387 Histidine kinase-like ATPases SH08_RS06675 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS06680 SM00448 cheY-homologous receiver domain SH08_RS06680 SM00862 Transcriptional regulatory protein, C terminal SH08_RS06765 SM00923 MbtH-like protein SH08_RS06770 SM00823 Phosphopantetheine attachment site SH08_RS06770 SM00824 Thioesterase SH08_RS06780 SM00382 ATPases associated with a variety of cellular activities SH08_RS06820 SM00822 SH08_RS06820 SH08_RS06850 SM00470 ParB-like nuclease domain SH08_RS06935 SM00764 Citrate lyase ligase C-terminal domain SH08_RS06940 SM00091 PAS domain SH08_RS06940 SM00387 Histidine kinase-like ATPases SH08_RS06945 SM00448 cheY-homologous receiver domain SH08_RS06960 SM00357 Cold shock protein domain SH08_RS06980 SM00729 Elongator protein 3, MiaB family, Radical SAM SH08_RS07005 SM00936 Penicillin-binding protein 5, C-terminal domain SH08_RS07035 SM00855 Phosphoglycerate mutase family SH08_RS07065 SM00671 Sel1-like repeats. SH08_RS07075 SM00271 DnaJ molecular chaperone homology domain SH08_RS07080 SM00671 Sel1-like repeats. SH08_RS07105 SM00382 ATPases associated with a variety of cellular activities SH08_RS07120 SM00062 Bacterial periplasmic substrate-binding proteins SH08_RS07135 SM00116 Domain in cystathionine beta-synthase and other proteins. SH08_RS07135 SM01091 Transporter associated domain SH08_RS07150 SM00729 Elongator protein 3, MiaB family, Radical SAM SH08_RS07315 SM00448 cheY-homologous receiver domain SH08_RS07315 SM00862 Transcriptional regulatory protein, C terminal SH08_RS07320 SM00387 Histidine kinase-like ATPases SH08_RS07320 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS07405 SM00796 Allophanate hydrolase subunit 1 SH08_RS07410 SM00797 Allophanate hydrolase subunit 2 SH08_RS07420 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SH08_RS07420 SM01232 SH08_RS07420 SH08_RS07485 SM00861 Transketolase, pyrimidine binding domain SH08_RS07500 SM00881 CoA binding domain SH08_RS07505 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS07505 SM00866 SH08_RS07505 SH08_RS07515 SM00872 Alpha mannosidase, middle domain SH08_RS07645 SM00855 Phosphoglycerate mutase family SH08_RS07670 SM00382 ATPases associated with a variety of cellular activities SH08_RS07695 SM00382 ATPases associated with a variety of cellular activities SH08_RS07745 SM00729 Elongator protein 3, MiaB family, Radical SAM SH08_RS07745 SM00876 Biotin and Thiamin Synthesis associated domain SH08_RS07765 SM00487 DEAD-like helicases superfamily SH08_RS07765 SM00490 helicase superfamily c-terminal domain SH08_RS07780 SM00729 Elongator protein 3, MiaB family, Radical SAM SH08_RS07785 SM00852 Probable molybdopterin binding domain SH08_RS07820 SM00155 Phospholipase D. Active site motifs. SH08_RS07845 SM00382 ATPases associated with a variety of cellular activities SH08_RS07860 SM00487 DEAD-like helicases superfamily SH08_RS07860 SM00490 helicase superfamily c-terminal domain SH08_RS07870 SM00487 DEAD-like helicases superfamily SH08_RS07870 SM00488 SH08_RS07870 SH08_RS07870 SM00491 SH08_RS07870 SH08_RS07895 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. SH08_RS07920 SM00382 ATPases associated with a variety of cellular activities SH08_RS07930 SM00062 Bacterial periplasmic substrate-binding proteins SH08_RS07930 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH08_RS07965 SM00529 Helix-turn-helix diphteria tox regulatory element SH08_RS07980 SM00382 ATPases associated with a variety of cellular activities SH08_RS08015 SM00852 Probable molybdopterin binding domain SH08_RS08025 SM00382 ATPases associated with a variety of cellular activities SH08_RS08050 SM00267 diguanylate cyclase SH08_RS08055 SM00729 Elongator protein 3, MiaB family, Radical SAM SH08_RS08075 SM00936 Penicillin-binding protein 5, C-terminal domain SH08_RS08080 SM00420 helix_turn_helix, Deoxyribose operon repressor SH08_RS08080 SM01134 SH08_RS08080 SH08_RS08085 SM00014 Acid phosphatase homologues SH08_RS08160 SM00382 ATPases associated with a variety of cellular activities SH08_RS08185 SM00062 Bacterial periplasmic substrate-binding proteins SH08_RS08185 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH08_RS08200 SM00062 Bacterial periplasmic substrate-binding proteins SH08_RS08200 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH08_RS08205 SM00382 ATPases associated with a variety of cellular activities SH08_RS08220 SM00644 SH08_RS08220 SH08_RS08285 SM00382 ATPases associated with a variety of cellular activities SH08_RS08290 SM00357 Cold shock protein domain SH08_RS08300 SM00382 ATPases associated with a variety of cellular activities SH08_RS08300 SM01086 C-terminal, D2-small domain, of ClpB protein SH08_RS08310 SM00316 Ribosomal protein S1-like RNA-binding domain SH08_RS08320 SM00382 ATPases associated with a variety of cellular activities SH08_RS08325 SM00382 ATPases associated with a variety of cellular activities SH08_RS08335 SM00344 helix_turn_helix ASNC type SH08_RS08340 SM00843 SH08_RS08340 SH08_RS08350 SM00382 ATPases associated with a variety of cellular activities SH08_RS08360 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS08445 SM00316 Ribosomal protein S1-like RNA-binding domain SH08_RS08450 SM00411 bacterial (prokaryotic) histone like domain SH08_RS08455 SM00849 Metallo-beta-lactamase superfamily SH08_RS08460 SM00382 ATPases associated with a variety of cellular activities SH08_RS08525 SM00849 Metallo-beta-lactamase superfamily SH08_RS08560 SM00382 ATPases associated with a variety of cellular activities SH08_RS08575 SM00062 Bacterial periplasmic substrate-binding proteins SH08_RS08635 SM00981 SH08_RS08635 SH08_RS08640 SM00382 ATPases associated with a variety of cellular activities SH08_RS08715 SM00851 MGS-like domain SH08_RS08730 SM00881 CoA binding domain SH08_RS08735 SM00992 Hemimethylated DNA-binding protein YccV like SH08_RS08740 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SH08_RS08820 SM00226 Low molecular weight phosphatase family SH08_RS08860 SM00357 Cold shock protein domain SH08_RS08865 SM00357 Cold shock protein domain SH08_RS08885 SM00073 Histidine Phosphotransfer domain SH08_RS08885 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS08885 SM00387 Histidine kinase-like ATPases SH08_RS08885 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS08885 SM00448 cheY-homologous receiver domain SH08_RS08895 SM00448 cheY-homologous receiver domain SH08_RS08895 SM00862 Transcriptional regulatory protein, C terminal SH08_RS08920 SM00271 DnaJ molecular chaperone homology domain SH08_RS08960 SM00903 Flavin reductase like domain SH08_RS09055 SM00028 Tetratricopeptide repeats SH08_RS09060 SM00267 diguanylate cyclase SH08_RS09100 SM00481 DNA polymerase alpha chain like domain SH08_RS09130 SM00421 helix_turn_helix, Lux Regulon SH08_RS09160 SM00506 Appr-1"-p processing enzyme SH08_RS09165 SM00155 Phospholipase D. Active site motifs. SH08_RS09220 SM00450 Rhodanese Homology Domain SH08_RS09225 SM00867 YceI-like domain SH08_RS09305 SM00858 SH08_RS09305 SH08_RS09350 SM00047 Lysozyme subfamily 2 SH08_RS09365 SM00316 Ribosomal protein S1-like RNA-binding domain SH08_RS09375 SM00363 S4 RNA-binding domain SH08_RS09410 SM00822 SH08_RS09410 SH08_RS09420 SM00825 Beta-ketoacyl synthase SH08_RS09510 SM00257 Lysin motif SH08_RS09515 SM00487 DEAD-like helicases superfamily SH08_RS09515 SM00490 helicase superfamily c-terminal domain SH08_RS09515 SM00982 SH08_RS09515 SH08_RS09515 SM01058 CarD-like/TRCF domain SH08_RS09530 SM00382 ATPases associated with a variety of cellular activities SH08_RS09575 SM00382 ATPases associated with a variety of cellular activities SH08_RS09590 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. SH08_RS09595 SM00387 Histidine kinase-like ATPases SH08_RS09600 SM00448 cheY-homologous receiver domain SH08_RS09600 SM00862 Transcriptional regulatory protein, C terminal SH08_RS09630 SM01329 SH08_RS09630 SH08_RS09725 SM00857 Resolvase, N terminal domain SH08_RS09730 SM00507 HNH nucleases SH08_RS09750 SM00422 helix_turn_helix, mercury resistance SH08_RS09755 SM00052 Putative diguanylate phosphodiesterase SH08_RS09755 SM01034 Sensors of blue-light using FAD SH08_RS09780 SM00052 Putative diguanylate phosphodiesterase SH08_RS09895 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS09910 SM01005 Alanine racemase, C-terminal domain SH08_RS09915 SM01091 Transporter associated domain SH08_RS09955 SM01120 SH08_RS09955 SH08_RS09965 SM00091 PAS domain SH08_RS09965 SM00382 ATPases associated with a variety of cellular activities SH08_RS09970 SM00869 Autotransporter beta-domain SH08_RS10000 SM01400 SH08_RS10000 SH08_RS10020 SM00937 SH08_RS10020 SH08_RS10080 SM00421 helix_turn_helix, Lux Regulon SH08_RS10080 SM00448 cheY-homologous receiver domain SH08_RS10085 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS10085 SM00387 Histidine kinase-like ATPases SH08_RS10100 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS10160 SM00528 Domain in histone-like proteins of HNS family SH08_RS10205 SM00382 ATPases associated with a variety of cellular activities SH08_RS10210 SM00382 ATPases associated with a variety of cellular activities SH08_RS10220 SM00155 Phospholipase D. Active site motifs. SH08_RS10305 SM00481 DNA polymerase alpha chain like domain SH08_RS10320 SM00363 S4 RNA-binding domain SH08_RS10330 SM00822 SH08_RS10330 SH08_RS10355 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH08_RS10355 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH08_RS10355 SM00493 SH08_RS10355 SH08_RS10390 SM00014 Acid phosphatase homologues SH08_RS10400 SM00028 Tetratricopeptide repeats SH08_RS10405 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH08_RS10420 SM00420 helix_turn_helix, Deoxyribose operon repressor SH08_RS10420 SM01134 SH08_RS10420 SH08_RS10430 SM00052 Putative diguanylate phosphodiesterase SH08_RS10430 SM00091 PAS domain SH08_RS10430 SM00267 diguanylate cyclase SH08_RS10440 SM00357 Cold shock protein domain SH08_RS10440 SM00955 SH08_RS10440 SH08_RS10460 SM00382 ATPases associated with a variety of cellular activities SH08_RS10465 SM00382 ATPases associated with a variety of cellular activities SH08_RS10500 SM01230 SH08_RS10500 SH08_RS10510 SM00530 Helix-turn-helix XRE-family like proteins SH08_RS10530 SM00382 ATPases associated with a variety of cellular activities SH08_RS10555 SM00450 Rhodanese Homology Domain SH08_RS10560 SM00642 Alpha-amylase domain SH08_RS10615 SM00354 helix_turn _helix lactose operon repressor SH08_RS10630 SM00091 PAS domain SH08_RS10630 SM00382 ATPases associated with a variety of cellular activities SH08_RS10640 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH08_RS10695 SM00100 Cyclic nucleotide-monophosphate binding domain SH08_RS10695 SM00419 helix_turn_helix, cAMP Regulatory protein SH08_RS10735 SM00463 Small MutS-related domain SH08_RS10740 SM00091 PAS domain SH08_RS10740 SM00267 diguanylate cyclase SH08_RS10755 SM00487 DEAD-like helicases superfamily SH08_RS10755 SM00490 helicase superfamily c-terminal domain SH08_RS10855 SM00470 ParB-like nuclease domain SH08_RS10910 SM00857 Resolvase, N terminal domain SH08_RS10930 SM00890 Domain of unknown function SH08_RS10965 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS11100 SM00195 Dual specificity phosphatase, catalytic domain SH08_RS11100 SM00404 Protein tyrosine phosphatase, catalytic domain motif SH08_RS11110 SM00382 ATPases associated with a variety of cellular activities SH08_RS11110 SM00487 DEAD-like helicases superfamily SH08_RS11110 SM00490 helicase superfamily c-terminal domain SH08_RS11110 SM00847 Helicase associated domain (HA2) Add an annotation SH08_RS11155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH08_RS11155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS11155 SM00319 Homologues of the ligand binding domain of Tar SH08_RS11165 SM01150 SH08_RS11165 SH08_RS11215 SM01321 SH08_RS11215 SH08_RS11230 SM00530 Helix-turn-helix XRE-family like proteins SH08_RS11250 SM00530 Helix-turn-helix XRE-family like proteins SH08_RS11255 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS11265 SM00382 ATPases associated with a variety of cellular activities SH08_RS11310 SM00829 Enoylreductase SH08_RS11315 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS11315 SM00895 SH08_RS11315 SH08_RS11370 SM00903 Flavin reductase like domain SH08_RS11400 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS11425 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS11445 SM00530 Helix-turn-helix XRE-family like proteins SH08_RS11450 SM00829 Enoylreductase SH08_RS11455 SM00919 Malic enzyme, NAD binding domain SH08_RS11455 SM01274 SH08_RS11455 SH08_RS11475 SM00382 ATPases associated with a variety of cellular activities SH08_RS11480 SM00382 ATPases associated with a variety of cellular activities SH08_RS11510 SM00267 diguanylate cyclase SH08_RS11545 SM00382 ATPases associated with a variety of cellular activities SH08_RS11560 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS11610 SM00869 Autotransporter beta-domain SH08_RS11650 SM01133 SH08_RS11650 SH08_RS11680 SM00267 diguanylate cyclase SH08_RS11720 SM00347 helix_turn_helix multiple antibiotic resistance protein SH08_RS11750 SM00267 diguanylate cyclase SH08_RS11775 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS11775 SM00895 SH08_RS11775 SH08_RS11800 SM00857 Resolvase, N terminal domain SH08_RS11840 SM00357 Cold shock protein domain SH08_RS11865 SM00357 Cold shock protein domain SH08_RS11870 SM00357 Cold shock protein domain SH08_RS11880 SM00507 HNH nucleases SH08_RS11925 SM00530 Helix-turn-helix XRE-family like proteins SH08_RS11975 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH08_RS12005 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS12010 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS12090 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SH08_RS12090 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SH08_RS12115 SM00448 cheY-homologous receiver domain SH08_RS12115 SM00862 Transcriptional regulatory protein, C terminal SH08_RS12120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS12120 SM00387 Histidine kinase-like ATPases SH08_RS12120 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS12175 SM00354 helix_turn _helix lactose operon repressor SH08_RS12235 SM00900 SH08_RS12235 SH08_RS12245 SM00478 endonuclease III SH08_RS12245 SM00525 SH08_RS12245 SH08_RS12270 SM00363 S4 RNA-binding domain SH08_RS12295 SM00347 helix_turn_helix multiple antibiotic resistance protein SH08_RS12345 SM00479 SH08_RS12345 SH08_RS12350 SM00382 ATPases associated with a variety of cellular activities SH08_RS12350 SM00487 DEAD-like helicases superfamily SH08_RS12350 SM00490 helicase superfamily c-terminal domain SH08_RS12380 SM00354 helix_turn _helix lactose operon repressor SH08_RS12455 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain SH08_RS12480 SM00257 Lysin motif SH08_RS12500 SM00382 ATPases associated with a variety of cellular activities SH08_RS12560 SM00882 Coenzyme A transferase SH08_RS12570 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS12580 SM00893 Electron transfer flavoprotein domain SH08_RS12585 SM00893 Electron transfer flavoprotein domain SH08_RS12660 SM00411 bacterial (prokaryotic) histone like domain SH08_RS12665 SM00873 B3/4 domain SH08_RS12665 SM00874 tRNA synthetase B5 domain SH08_RS12665 SM00896 Ferredoxin-fold anticodon binding domain SH08_RS12695 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH08_RS12760 SM01060 SH08_RS12760 SH08_RS12775 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS12810 SM00465 GIY-YIG type nucleases (URI domain) SH08_RS12885 SM00382 ATPases associated with a variety of cellular activities SH08_RS12890 SM00450 Rhodanese Homology Domain SH08_RS12910 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SH08_RS12920 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH08_RS12920 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH08_RS12920 SM00493 SH08_RS12920 SH08_RS12950 SM00870 SH08_RS12950 SH08_RS12965 SM00420 helix_turn_helix, Deoxyribose operon repressor SH08_RS12965 SM01134 SH08_RS12965 SH08_RS12985 SM00829 Enoylreductase SH08_RS13010 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH08_RS13030 SM00763 PrkA AAA domain SH08_RS13040 SM00267 diguanylate cyclase SH08_RS13045 SM00267 diguanylate cyclase SH08_RS13065 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS13085 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH08_RS13085 SM00267 diguanylate cyclase SH08_RS13140 SM00341 Helicase and RNase D C-terminal SH08_RS13140 SM00474 3'-5' exonuclease SH08_RS13160 SM00487 DEAD-like helicases superfamily SH08_RS13160 SM00491 SH08_RS13160 SH08_RS13195 SM00052 Putative diguanylate phosphodiesterase SH08_RS13200 SM01091 Transporter associated domain SH08_RS13245 SM00357 Cold shock protein domain SH08_RS13275 SM00346 helix_turn_helix isocitrate lyase regulation SH08_RS13290 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH08_RS13290 SM00245 tail specific protease SH08_RS13295 SM00945 ProQ/FINO family SH08_RS13300 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH08_RS13365 SM00479 SH08_RS13365 SH08_RS13435 SM00257 Lysin motif SH08_RS13445 SM00382 ATPases associated with a variety of cellular activities SH08_RS13455 SM00382 ATPases associated with a variety of cellular activities SH08_RS13460 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH08_RS13535 SM00836 DALR anticodon binding domain SH08_RS13535 SM01016 Arginyl tRNA synthetase N terminal dom SH08_RS13565 SM00448 cheY-homologous receiver domain SH08_RS13570 SM00448 cheY-homologous receiver domain SH08_RS13575 SM00138 Methyltransferase, chemotaxis proteins SH08_RS13580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH08_RS13580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS13580 SM00319 Homologues of the ligand binding domain of Tar SH08_RS13585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH08_RS13585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS13585 SM00319 Homologues of the ligand binding domain of Tar SH08_RS13590 SM00260 Two component signalling adaptor domain SH08_RS13595 SM00073 Histidine Phosphotransfer domain SH08_RS13595 SM00260 Two component signalling adaptor domain SH08_RS13595 SM00387 Histidine kinase-like ATPases SH08_RS13595 SM01231 SH08_RS13595 SH08_RS13640 SM00382 ATPases associated with a variety of cellular activities SH08_RS13710 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH08_RS13710 SM00465 GIY-YIG type nucleases (URI domain) SH08_RS13715 SM00421 helix_turn_helix, Lux Regulon SH08_RS13715 SM00448 cheY-homologous receiver domain SH08_RS13730 SM00421 helix_turn_helix, Lux Regulon SH08_RS13735 SM00382 ATPases associated with a variety of cellular activities SH08_RS13750 SM00062 Bacterial periplasmic substrate-binding proteins SH08_RS13750 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH08_RS13785 SM00642 Alpha-amylase domain SH08_RS13850 SM00382 ATPases associated with a variety of cellular activities SH08_RS13900 SM00421 helix_turn_helix, Lux Regulon SH08_RS13920 SM00267 diguanylate cyclase SH08_RS13950 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH08_RS13980 SM00387 Histidine kinase-like ATPases SH08_RS13980 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS13985 SM00448 cheY-homologous receiver domain SH08_RS13985 SM00862 Transcriptional regulatory protein, C terminal SH08_RS13990 SM00095 Transthyretin SH08_RS14035 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins SH08_RS14035 SM00634 Bacterial Ig-like domain (group 1) SH08_RS14145 SM00869 Autotransporter beta-domain SH08_RS14200 SM00871 Bacterial transcription activator, effector binding domain SH08_RS14205 SM00936 Penicillin-binding protein 5, C-terminal domain SH08_RS14210 SM00479 SH08_RS14210 SH08_RS14295 SM00984 UDP binding domain SH08_RS14300 SM01350 SH08_RS14300 SH08_RS14460 SM00226 Low molecular weight phosphatase family SH08_RS14470 SM00116 Domain in cystathionine beta-synthase and other proteins. SH08_RS14470 SM01091 Transporter associated domain SH08_RS14490 SM00052 Putative diguanylate phosphodiesterase SH08_RS14490 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH08_RS14490 SM00091 PAS domain SH08_RS14490 SM00267 diguanylate cyclase SH08_RS14495 SM00478 endonuclease III SH08_RS14495 SM01009 AlkA N-terminal domain SH08_RS14525 SM00327 von Willebrand factor (vWF) type A domain SH08_RS14550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS14550 SM00387 Histidine kinase-like ATPases SH08_RS14550 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS14555 SM00448 cheY-homologous receiver domain SH08_RS14555 SM00862 Transcriptional regulatory protein, C terminal SH08_RS14585 SM00046 Diacylglycerol kinase catalytic domain (presumed) SH08_RS14590 SM01134 SH08_RS14590 SH08_RS14605 SM00420 helix_turn_helix, Deoxyribose operon repressor SH08_RS14610 SM00829 Enoylreductase SH08_RS14640 SM01133 SH08_RS14640 SH08_RS14660 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS14660 SM00866 SH08_RS14660 SH08_RS14665 SM00641 Glycosyl hydrolases family 25 SH08_RS14735 SM00773 Proposed nucleic acid binding domain SH08_RS14755 SM00382 ATPases associated with a variety of cellular activities SH08_RS14765 SM00327 von Willebrand factor (vWF) type A domain SH08_RS14785 SM00448 cheY-homologous receiver domain SH08_RS14785 SM00850 LytTr DNA-binding domain SH08_RS14790 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH08_RS14795 SM00422 helix_turn_helix, mercury resistance SH08_RS14810 SM00382 ATPases associated with a variety of cellular activities SH08_RS14825 SM01217 SH08_RS14825 SH08_RS14925 SM00354 helix_turn _helix lactose operon repressor SH08_RS14975 SM00518 AP endonuclease family 2 SH08_RS14995 SM00100 Cyclic nucleotide-monophosphate binding domain SH08_RS15040 SM00841 Elongation factor P, C-terminal SH08_RS15040 SM01185 SH08_RS15040 SH08_RS15050 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH08_RS15055 SM00014 Acid phosphatase homologues SH08_RS15065 SM00052 Putative diguanylate phosphodiesterase SH08_RS15085 SM00382 ATPases associated with a variety of cellular activities SH08_RS15100 SM00363 S4 RNA-binding domain SH08_RS15105 SM00487 DEAD-like helicases superfamily SH08_RS15105 SM00490 helicase superfamily c-terminal domain SH08_RS15135 SM00869 Autotransporter beta-domain SH08_RS15150 SM00421 helix_turn_helix, Lux Regulon SH08_RS15150 SM00448 cheY-homologous receiver domain SH08_RS15190 SM00382 ATPases associated with a variety of cellular activities SH08_RS15215 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS15245 SM00382 ATPases associated with a variety of cellular activities SH08_RS15255 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS15280 SM00387 Histidine kinase-like ATPases SH08_RS15285 SM00421 helix_turn_helix, Lux Regulon SH08_RS15285 SM00448 cheY-homologous receiver domain SH08_RS15290 SM00387 Histidine kinase-like ATPases SH08_RS15290 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS15290 SM00448 cheY-homologous receiver domain SH08_RS15295 SM00091 PAS domain SH08_RS15295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS15295 SM00387 Histidine kinase-like ATPases SH08_RS15295 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS15300 SM00382 ATPases associated with a variety of cellular activities SH08_RS15300 SM00448 cheY-homologous receiver domain SH08_RS15305 SM00882 Coenzyme A transferase SH08_RS15310 SM00882 Coenzyme A transferase SH08_RS15340 SM01359 SH08_RS15340 SH08_RS15340 SM01360 SH08_RS15340 SH08_RS15355 SM00434 DNA Topoisomerase IV SH08_RS15365 SM00869 Autotransporter beta-domain SH08_RS15450 SM00346 helix_turn_helix isocitrate lyase regulation SH08_RS15455 SM00852 Probable molybdopterin binding domain SH08_RS15520 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH08_RS15555 SM00849 Metallo-beta-lactamase superfamily SH08_RS15565 SM00327 von Willebrand factor (vWF) type A domain SH08_RS15630 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS15630 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SH08_RS15635 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SH08_RS15670 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH08_RS15735 SM00905 Dihydroneopterin aldolase SH08_RS15750 SM00382 ATPases associated with a variety of cellular activities SH08_RS15765 SM00062 Bacterial periplasmic substrate-binding proteins SH08_RS15770 SM00062 Bacterial periplasmic substrate-binding proteins SH08_RS15815 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH08_RS15835 SM00825 Beta-ketoacyl synthase SH08_RS15875 SM00463 Small MutS-related domain SH08_RS16070 SM00421 helix_turn_helix, Lux Regulon SH08_RS16070 SM00448 cheY-homologous receiver domain SH08_RS16075 SM00062 Bacterial periplasmic substrate-binding proteins SH08_RS16075 SM00073 Histidine Phosphotransfer domain SH08_RS16075 SM00387 Histidine kinase-like ATPases SH08_RS16075 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS16075 SM00448 cheY-homologous receiver domain SH08_RS16130 SM00387 Histidine kinase-like ATPases SH08_RS16135 SM00448 cheY-homologous receiver domain SH08_RS16135 SM00850 LytTr DNA-binding domain SH08_RS16140 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS16205 SM00052 Putative diguanylate phosphodiesterase SH08_RS16205 SM00267 diguanylate cyclase SH08_RS16295 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH08_RS16295 SM00292 breast cancer carboxy-terminal domain SH08_RS16295 SM00532 Ligase N family SH08_RS16300 SM00771 ZipA, C-terminal domain (FtsZ-binding) SH08_RS16340 SM00773 Proposed nucleic acid binding domain SH08_RS16350 SM00382 ATPases associated with a variety of cellular activities SH08_RS16370 SM00822 SH08_RS16370 SH08_RS16415 SM00646 SH08_RS16415 SH08_RS16425 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS16430 SM00877 SH08_RS16430 SH08_RS16435 SM00877 SH08_RS16435 SH08_RS16480 SM00877 SH08_RS16480 SH08_RS16505 SM00877 SH08_RS16505 SH08_RS16510 SM00919 Malic enzyme, NAD binding domain SH08_RS16510 SM01274 SH08_RS16510 SH08_RS16520 SM00861 Transketolase, pyrimidine binding domain SH08_RS16540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS16540 SM00387 Histidine kinase-like ATPases SH08_RS16600 SM01130 SH08_RS16600 SH08_RS16665 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH08_RS16665 SM00382 ATPases associated with a variety of cellular activities SH08_RS16725 SM00052 Putative diguanylate phosphodiesterase SH08_RS16725 SM00267 diguanylate cyclase SH08_RS16755 SM00116 Domain in cystathionine beta-synthase and other proteins. SH08_RS16755 SM01240 SH08_RS16755 SH08_RS16775 SM00564 beta-propeller repeat SH08_RS16795 SM00530 Helix-turn-helix XRE-family like proteins SH08_RS16805 SM00562 SH08_RS16805 SH08_RS16815 SM01359 SH08_RS16815 SH08_RS16815 SM01360 SH08_RS16815 SH08_RS16820 SM00450 Rhodanese Homology Domain SH08_RS16850 SM00271 DnaJ molecular chaperone homology domain SH08_RS16940 SM00829 Enoylreductase SH08_RS16950 SM00382 ATPases associated with a variety of cellular activities SH08_RS16960 SM00028 Tetratricopeptide repeats SH08_RS16980 SM00938 Nitrogen regulatory protein P-II SH08_RS16985 SM00382 ATPases associated with a variety of cellular activities SH08_RS16985 SM00448 cheY-homologous receiver domain SH08_RS16995 SM00387 Histidine kinase-like ATPases SH08_RS16995 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS17000 SM01211 SH08_RS17000 SH08_RS17005 SM00062 Bacterial periplasmic substrate-binding proteins SH08_RS17065 SM00358 Double-stranded RNA binding motif SH08_RS17065 SM00535 Ribonuclease III family SH08_RS17115 SM00487 DEAD-like helicases superfamily SH08_RS17115 SM00490 helicase superfamily c-terminal domain SH08_RS17140 SM00986 Uracil DNA glycosylase superfamily SH08_RS17140 SM00987 UreE urease accessory protein, C-terminal domain SH08_RS17145 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH08_RS17160 SM01144 SH08_RS17160 SH08_RS17165 SM00881 CoA binding domain SH08_RS17170 SM00155 Phospholipase D. Active site motifs. SH08_RS17210 SM00382 ATPases associated with a variety of cellular activities SH08_RS17210 SM01086 C-terminal, D2-small domain, of ClpB protein SH08_RS17220 SM00363 S4 RNA-binding domain SH08_RS17240 SM00830 Chorismate mutase type II SH08_RS17245 SM00830 Chorismate mutase type II SH08_RS17265 SM00267 diguanylate cyclase SH08_RS17295 SM00382 ATPases associated with a variety of cellular activities SH08_RS17295 SM00962 SRP54-type protein, GTPase domain SH08_RS17295 SM00963 SRP54-type protein, helical bundle domain SH08_RS17305 SM01091 Transporter associated domain SH08_RS17375 SM00487 DEAD-like helicases superfamily SH08_RS17375 SM00490 helicase superfamily c-terminal domain SH08_RS17540 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS17540 SM00895 SH08_RS17540 SH08_RS17545 SM00257 Lysin motif SH08_RS17545 SM00749 bacterial OsmY and nodulation domain SH08_RS17555 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH08_RS17560 SM00450 Rhodanese Homology Domain SH08_RS17565 SM00528 Domain in histone-like proteins of HNS family SH08_RS17605 SM00382 ATPases associated with a variety of cellular activities SH08_RS17635 SM00347 helix_turn_helix multiple antibiotic resistance protein SH08_RS17705 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH08_RS17730 SM01059 Chloramphenicol acetyltransferase SH08_RS17770 SM00420 helix_turn_helix, Deoxyribose operon repressor SH08_RS17770 SM01134 SH08_RS17770 SH08_RS17780 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH08_RS17780 SM00382 ATPases associated with a variety of cellular activities SH08_RS17785 SM00849 Metallo-beta-lactamase superfamily SH08_RS17805 SM00354 helix_turn _helix lactose operon repressor SH08_RS17895 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH08_RS17895 SM00382 ATPases associated with a variety of cellular activities SH08_RS17905 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SH08_RS17905 SM00534 ATPase domain of DNA mismatch repair MUTS family SH08_RS17915 SM00420 helix_turn_helix, Deoxyribose operon repressor SH08_RS17915 SM01134 SH08_RS17915 SH08_RS17930 SM01007 Class II Aldolase and Adducin N-terminal domain SH08_RS17950 SM00257 Lysin motif SH08_RS18020 SM01101 SH08_RS18020 SH08_RS18045 SM00487 DEAD-like helicases superfamily SH08_RS18045 SM00490 helicase superfamily c-terminal domain SH08_RS18090 SM00893 Electron transfer flavoprotein domain SH08_RS18135 SM01192 SH08_RS18135 SH08_RS18135 SM01193 SH08_RS18135 SH08_RS18155 SM00966 SpoVT / AbrB like domain SH08_RS18160 SM00954 Region found in RelA / SpoT proteins SH08_RS18170 SM00073 Histidine Phosphotransfer domain SH08_RS18170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS18170 SM00387 Histidine kinase-like ATPases SH08_RS18170 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS18170 SM00448 cheY-homologous receiver domain SH08_RS18175 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH08_RS18180 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH08_RS18235 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH08_RS18235 SM00475 5'-3' exonuclease SH08_RS18245 SM01007 Class II Aldolase and Adducin N-terminal domain SH08_RS18270 SM00420 helix_turn_helix, Deoxyribose operon repressor SH08_RS18270 SM01134 SH08_RS18270 SH08_RS18310 SM00925 MltA specific insert domain SH08_RS18330 SM00646 SH08_RS18330 SH08_RS18390 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH08_RS18410 SM00927 DNA mismatch repair enzyme MutH SH08_RS18435 SM00563 Phosphate acyltransferases SH08_RS18440 SM00354 helix_turn _helix lactose operon repressor SH08_RS18490 SM00862 Transcriptional regulatory protein, C terminal SH08_RS18515 SM00028 Tetratricopeptide repeats SH08_RS18515 SM00862 Transcriptional regulatory protein, C terminal SH08_RS18530 SM00421 helix_turn_helix, Lux Regulon SH08_RS18580 SM00257 Lysin motif SH08_RS18585 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH08_RS18590 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH08_RS18600 SM00091 PAS domain SH08_RS18600 SM00382 ATPases associated with a variety of cellular activities SH08_RS18655 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH08_RS18660 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH08_RS18715 SM00937 SH08_RS18715 SH08_RS18760 SM01022 SH08_RS18760 SH08_RS18800 SM01011 Aminopeptidase P, N-terminal domain SH08_RS18890 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH08_RS18925 SM00861 Transketolase, pyrimidine binding domain SH08_RS18970 SM00731 SprT homologues. SH08_RS18995 SM00732 Likely ribonuclease with RNase H fold. SH08_RS19000 SM00382 ATPases associated with a variety of cellular activities SH08_RS19015 SM01152 SH08_RS19015 SH08_RS19025 SM00729 Elongator protein 3, MiaB family, Radical SAM SH08_RS19035 SM00870 SH08_RS19035 SH08_RS19060 SM00478 endonuclease III SH08_RS19060 SM00525 SH08_RS19060 SH08_RS19120 SM01276 SH08_RS19120 SH08_RS19160 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS19160 SM00895 SH08_RS19160 SH08_RS19305 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS19335 SM00729 Elongator protein 3, MiaB family, Radical SAM SH08_RS19345 SM00563 Phosphate acyltransferases SH08_RS19360 SM00530 Helix-turn-helix XRE-family like proteins SH08_RS19370 SM00871 Bacterial transcription activator, effector binding domain SH08_RS19380 SM00448 cheY-homologous receiver domain SH08_RS19380 SM00862 Transcriptional regulatory protein, C terminal SH08_RS19385 SM00387 Histidine kinase-like ATPases SH08_RS19385 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS19405 SM00387 Histidine kinase-like ATPases SH08_RS19405 SM00433 TopoisomeraseII SH08_RS19515 SM00244 prohibitin homologues SH08_RS19540 SM01118 SH08_RS19540 SH08_RS19550 SM00287 Bacterial SH3 domain homologues SH08_RS19565 SM00905 Dihydroneopterin aldolase SH08_RS19570 SM01207 SH08_RS19570 SH08_RS19635 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH08_RS19635 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH08_RS19650 SM00354 helix_turn _helix lactose operon repressor SH08_RS19655 SM01038 Beta galactosidase small chain SH08_RS19685 SM00530 Helix-turn-helix XRE-family like proteins SH08_RS19735 SM00858 SH08_RS19735 SH08_RS19750 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS19750 SM00895 SH08_RS19750 SH08_RS19915 SM00858 SH08_RS19915 SH08_RS19930 SM00420 helix_turn_helix, Deoxyribose operon repressor SH08_RS19930 SM01134 SH08_RS19930 SH08_RS20025 SM00749 bacterial OsmY and nodulation domain SH08_RS20035 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH08_RS20050 SM00465 GIY-YIG type nucleases (URI domain) SH08_RS20090 SM00487 DEAD-like helicases superfamily SH08_RS20090 SM00490 helicase superfamily c-terminal domain SH08_RS20095 SM00028 Tetratricopeptide repeats SH08_RS20100 SM00316 Ribosomal protein S1-like RNA-binding domain SH08_RS20100 SM00322 K homology RNA-binding domain SH08_RS20105 SM01387 SH08_RS20105 SH08_RS20125 SM00316 Ribosomal protein S1-like RNA-binding domain SH08_RS20170 SM00382 ATPases associated with a variety of cellular activities SH08_RS20180 SM01103 SH08_RS20180 SH08_RS20255 SM00382 ATPases associated with a variety of cellular activities SH08_RS20285 SM00382 ATPases associated with a variety of cellular activities SH08_RS20360 SM01130 SH08_RS20360 SH08_RS20365 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS20365 SM00895 SH08_RS20365 SH08_RS20405 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH08_RS20410 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH08_RS20465 SM00316 Ribosomal protein S1-like RNA-binding domain SH08_RS20495 SM00052 Putative diguanylate phosphodiesterase SH08_RS20495 SM00267 diguanylate cyclase SH08_RS20500 SM00829 Enoylreductase SH08_RS20525 SM00878 Biotin carboxylase C-terminal domain SH08_RS20590 SM00062 Bacterial periplasmic substrate-binding proteins SH08_RS20605 SM00382 ATPases associated with a variety of cellular activities SH08_RS20710 SM00422 helix_turn_helix, mercury resistance SH08_RS20725 SM00662 RNA polymerases D SH08_RS20730 SM00363 S4 RNA-binding domain SH08_RS20730 SM01390 SH08_RS20730 SH08_RS20795 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH08_RS20800 SM01374 SH08_RS20800 SH08_RS20820 SM00322 K homology RNA-binding domain SH08_RS20835 SM01382 SH08_RS20835 SH08_RS20835 SM01383 SH08_RS20835 SH08_RS20855 SM01403 SH08_RS20855 SH08_RS20880 SM00382 ATPases associated with a variety of cellular activities SH08_RS20940 SM00495 Chitin-binding domain type 3 SH08_RS20950 SM00838 Elongation factor G C-terminus SH08_RS20950 SM00889 Elongation factor G, domain IV SH08_RS21015 SM00382 ATPases associated with a variety of cellular activities SH08_RS21045 SM00100 Cyclic nucleotide-monophosphate binding domain SH08_RS21045 SM00419 helix_turn_helix, cAMP Regulatory protein SH08_RS21130 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS21130 SM00866 SH08_RS21130 SH08_RS21210 SM00965 Secretin and TonB N terminus short domain SH08_RS21255 SM00363 S4 RNA-binding domain SH08_RS21280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH08_RS21280 SM00387 Histidine kinase-like ATPases SH08_RS21280 SM00388 His Kinase A (phosphoacceptor) domain SH08_RS21285 SM00448 cheY-homologous receiver domain SH08_RS21285 SM00862 Transcriptional regulatory protein, C terminal SH08_RS21295 SM00316 Ribosomal protein S1-like RNA-binding domain SH08_RS21295 SM00732 Likely ribonuclease with RNase H fold. SH08_RS21300 SM00899 SH08_RS21300 SH08_RS21350 SM00421 helix_turn_helix, Lux Regulon SH08_RS21365 SM00382 ATPases associated with a variety of cellular activities SH08_RS21370 SM00420 helix_turn_helix, Deoxyribose operon repressor SH08_RS21370 SM01134 SH08_RS21370 SH08_RS21380 SM00450 Rhodanese Homology Domain SH08_RS21410 SM00642 Alpha-amylase domain SH08_RS21415 SM00642 Alpha-amylase domain SH08_RS21420 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH08_RS21440 SM00354 helix_turn _helix lactose operon repressor SH08_RS21495 SM00382 ATPases associated with a variety of cellular activities SH08_RS21520 SM00382 ATPases associated with a variety of cellular activities SH08_RS21525 SM00382 ATPases associated with a variety of cellular activities SH08_RS21570 SM00382 ATPases associated with a variety of cellular activities SH08_RS21575 SM00382 ATPases associated with a variety of cellular activities SH08_RS21575 SM00962 SRP54-type protein, GTPase domain SH08_RS21575 SM00963 SRP54-type protein, helical bundle domain SH08_RS21650 SM00382 ATPases associated with a variety of cellular activities SH08_RS21655 SM00382 ATPases associated with a variety of cellular activities SH08_RS21690 SM00382 ATPases associated with a variety of cellular activities SH08_RS21780 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH08_RS21815 SM00421 helix_turn_helix, Lux Regulon SH08_RS21860 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS21865 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS21875 SM01235 SH08_RS21875 SH08_RS21885 SM00421 helix_turn_helix, Lux Regulon SH08_RS21910 SM00052 Putative diguanylate phosphodiesterase SH08_RS21935 SM00052 Putative diguanylate phosphodiesterase SH08_RS21935 SM00267 diguanylate cyclase SH08_RS21940 SM00028 Tetratricopeptide repeats SH08_RS22005 SM00382 ATPases associated with a variety of cellular activities SH08_RS22010 SM00382 ATPases associated with a variety of cellular activities SH08_RS22090 SM00530 Helix-turn-helix XRE-family like proteins SH08_RS22095 SM00357 Cold shock protein domain SH08_RS22170 SM00382 ATPases associated with a variety of cellular activities SH08_RS22180 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS22185 SM00047 Lysozyme subfamily 2 SH08_RS22190 SM00642 Alpha-amylase domain SH08_RS22210 SM00346 helix_turn_helix isocitrate lyase regulation SH08_RS22245 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH08_RS22255 SM01007 Class II Aldolase and Adducin N-terminal domain SH08_RS22375 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS22375 SM00895 SH08_RS22375 SH08_RS22390 SM00971 Serine acetyltransferase, N-terminal SH08_RS22410 SM00450 Rhodanese Homology Domain SH08_RS22435 SM00829 Enoylreductase SH08_RS22530 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SH08_RS22530 SM01232 SH08_RS22530 SH08_RS22590 SM00532 Ligase N family SH08_RS22595 SM00072 Guanylate kinase homologues. SH08_RS22600 SM01409 SH08_RS22600 SH08_RS22605 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH08_RS22605 SM00954 Region found in RelA / SpoT proteins SH08_RS22615 SM00487 DEAD-like helicases superfamily SH08_RS22615 SM00490 helicase superfamily c-terminal domain SH08_RS22710 SM00387 Histidine kinase-like ATPases SH08_RS22715 SM00421 helix_turn_helix, Lux Regulon SH08_RS22715 SM00448 cheY-homologous receiver domain SH08_RS22785 SM00342 helix_turn_helix, arabinose operon control protein SH08_RS22805 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS22805 SM00866 SH08_RS22805 SH08_RS22845 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH08_RS22860 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH08_RS22860 SM00895 SH08_RS22860 SH08_RS22885 SM00387 Histidine kinase-like ATPases SH08_RS22885 SM00433 TopoisomeraseII SH08_RS22895 SM00480 DNA polymerase III beta subunit SH08_RS22900 SM00382 ATPases associated with a variety of cellular activities SH08_RS22900 SM00760 Bacterial dnaA protein helix-turn-helix domain