locus-tag class description SH03_RS00005 PF00468 Ribosomal protein L34 SH03_RS00010 PF00825 Ribonuclease P SH03_RS00015 PF01809 Putative membrane protein insertion efficiency factor SH03_RS00020 PF02096 60Kd inner membrane protein SH03_RS00020 PF14849 YidC periplasmic domain SH03_RS00025 PF10396 GTP-binding protein TrmE N-terminus SH03_RS00025 PF12631 MnmE helical domain SH03_RS00025 PF01926 50S ribosome-binding GTPase SH03_RS00030 PF08053 Tryptophanase operon leader peptide SH03_RS00035 PF01212 Beta-eliminating lyase SH03_RS00040 PF03222 Tryptophan/tyrosine permease family SH03_RS00045 PF07690 Major Facilitator Superfamily SH03_RS00050 PF03466 LysR substrate binding domain SH03_RS00050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS00060 PF03358 NADPH-dependent FMN reductase SH03_RS00065 PF00860 Permease family SH03_RS00070 PF13419 Haloacid dehalogenase-like hydrolase SH03_RS00080 PF03691 Uncharacterised protein family (UPF0167) SH03_RS00085 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH03_RS00090 PF00756 Putative esterase SH03_RS00090 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH03_RS00095 PF02264 LamB porin SH03_RS00095 PF11471 Maltoporin periplasmic N-terminal extension SH03_RS00100 PF00232 Glycosyl hydrolase family 1 SH03_RS00105 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH03_RS00105 PF02378 Phosphotransferase system, EIIC SH03_RS00105 PF00367 phosphotransferase system, EIIB SH03_RS00110 PF03123 CAT RNA binding domain SH03_RS00110 PF00874 PRD domain SH03_RS00115 PF01895 PhoU domain SH03_RS00120 PF00005 ABC transporter SH03_RS00125 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS00130 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS00135 PF12849 PBP superfamily domain SH03_RS00140 PF01380 SIS domain SH03_RS00145 PF12804 MobA-like NTP transferase domain SH03_RS00145 PF14602 Hexapeptide repeat of succinyl-transferase SH03_RS00145 PF00132 Bacterial transferase hexapeptide (six repeats) SH03_RS00150 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SH03_RS00150 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SH03_RS00155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH03_RS00155 PF02874 ATP synthase alpha/beta family, beta-barrel domain SH03_RS00160 PF00231 ATP synthase SH03_RS00165 PF02874 ATP synthase alpha/beta family, beta-barrel domain SH03_RS00165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH03_RS00165 PF00306 ATP synthase alpha/beta chain, C terminal domain SH03_RS00170 PF00213 ATP synthase delta (OSCP) subunit SH03_RS00175 PF00430 ATP synthase B/B' CF(0) SH03_RS00180 PF00137 ATP synthase subunit C SH03_RS00185 PF00119 ATP synthase A chain SH03_RS00190 PF03899 ATP synthase I chain SH03_RS00195 PF02527 rRNA small subunit methyltransferase G SH03_RS00200 PF13932 GidA associated domain SH03_RS00200 PF01134 Glucose inhibited division protein A SH03_RS00205 PF00258 Flavodoxin SH03_RS00210 PF01037 Lrp/AsnC ligand binding domain SH03_RS00215 PF03590 Aspartate-ammonia ligase SH03_RS00220 PF05762 VWA domain containing CoxE-like protein SH03_RS00225 PF17868 AAA lid domain SH03_RS00225 PF07728 AAA domain (dynein-related subfamily) SH03_RS00225 PF12592 Protein of unknown function (DUF3763) SH03_RS00230 PF02705 K+ potassium transporter SH03_RS00235 PF05025 RbsD / FucU transport protein family SH03_RS00240 PF00005 ABC transporter SH03_RS00245 PF02653 Branched-chain amino acid transport system / permease component SH03_RS00250 PF13407 Periplasmic binding protein domain SH03_RS00255 PF00294 pfkB family carbohydrate kinase SH03_RS00260 PF00356 Bacterial regulatory proteins, lacI family SH03_RS00265 PF07690 Major Facilitator Superfamily SH03_RS00270 PF00392 Bacterial regulatory proteins, gntR family SH03_RS00270 PF07729 FCD domain SH03_RS00305 PF03466 LysR substrate binding domain SH03_RS00305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS00310 PF04219 Protein of unknown function, DUF SH03_RS00315 PF01078 Magnesium chelatase, subunit ChlI SH03_RS00315 PF13335 Magnesium chelatase, subunit ChlI C-terminal SH03_RS00320 PF08046 IlvGEDA operon leader peptide SH03_RS00335 PF01063 Amino-transferase class IV SH03_RS00340 PF00920 Dehydratase family SH03_RS00345 PF00585 C-terminal regulatory domain of Threonine dehydratase SH03_RS00345 PF00291 Pyridoxal-phosphate dependent enzyme SH03_RS00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS00350 PF03466 LysR substrate binding domain SH03_RS00355 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SH03_RS00355 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SH03_RS00370 PF13361 UvrD-like helicase C-terminal domain SH03_RS00370 PF00580 UvrD/REP helicase N-terminal domain SH03_RS00375 PF02541 Ppx/GppA phosphatase family SH03_RS00380 PF00271 Helicase conserved C-terminal domain SH03_RS00380 PF00270 DEAD/DEAH box helicase SH03_RS00385 PF00085 Thioredoxin SH03_RS00395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH03_RS00395 PF07498 Rho termination factor, N-terminal domain SH03_RS00395 PF07497 Rho termination factor, RNA-binding domain SH03_RS00405 PF00953 Glycosyl transferase family 4 SH03_RS00410 PF02706 Chain length determinant protein SH03_RS00415 PF02350 UDP-N-acetylglucosamine 2-epimerase SH03_RS00420 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SH03_RS00420 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SH03_RS00420 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SH03_RS00425 PF16363 GDP-mannose 4,6 dehydratase SH03_RS00430 PF00483 Nucleotidyl transferase SH03_RS00440 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SH03_RS00445 PF01943 Polysaccharide biosynthesis protein SH03_RS00450 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 SH03_RS00455 PF06899 WzyE protein, O-antigen assembly polymerase SH03_RS00460 PF03808 Glycosyl transferase WecB/TagA/CpsF family SH03_RS00465 PF00324 Amino acid permease SH03_RS00490 PF13186 Iron-sulfur cluster-binding domain SH03_RS00490 PF04055 Radical SAM superfamily SH03_RS00495 PF00884 Sulfatase SH03_RS00500 PF07219 HemY protein N-terminus SH03_RS00500 PF07719 Tetratricopeptide repeat SH03_RS00505 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase SH03_RS00510 PF02602 Uroporphyrinogen-III synthase HemD SH03_RS00515 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SH03_RS00515 PF03900 Porphobilinogen deaminase, C-terminal domain SH03_RS00520 PF12633 Adenylate cyclase NT domain SH03_RS00520 PF01295 Adenylate cyclase, class-I SH03_RS00525 PF01491 Frataxin-like domain SH03_RS00530 PF13627 Prokaryotic lipoprotein-attachment site SH03_RS00535 PF01678 Diaminopimelate epimerase SH03_RS00540 PF04340 Protein of unknown function, DUF484 SH03_RS00545 PF02899 Phage integrase, N-terminal SAM-like domain SH03_RS00545 PF00589 Phage integrase family SH03_RS00550 PF13419 Haloacid dehalogenase-like hydrolase SH03_RS00555 PF00580 UvrD/REP helicase N-terminal domain SH03_RS00555 PF13361 UvrD-like helicase C-terminal domain SH03_RS00560 PF09992 Phosphodiester glycosidase SH03_RS00570 PF01544 CorA-like Mg2+ transporter protein SH03_RS00575 PF10947 Protein of unknown function (DUF2628) SH03_RS00585 PF00892 EamA-like transporter family SH03_RS00590 PF03061 Thioesterase superfamily SH03_RS00595 PF02253 Phospholipase A1 SH03_RS00600 PF00570 HRDC domain SH03_RS00600 PF00270 DEAD/DEAH box helicase SH03_RS00600 PF00271 Helicase conserved C-terminal domain SH03_RS00600 PF09382 RQC domain SH03_RS00600 PF16124 RecQ zinc-binding SH03_RS00605 PF01810 LysE type translocator SH03_RS00610 PF01810 LysE type translocator SH03_RS00615 PF12146 Serine aminopeptidase, S33 SH03_RS00625 PF00892 EamA-like transporter family SH03_RS00630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS00630 PF03466 LysR substrate binding domain SH03_RS00635 PF01717 Cobalamin-independent synthase, Catalytic domain SH03_RS00635 PF08267 Cobalamin-independent synthase, N-terminal domain SH03_RS00640 PF01738 Dienelactone hydrolase family SH03_RS00645 PF01048 Phosphorylase superfamily SH03_RS00650 PF02646 RmuC family SH03_RS00655 PF01209 ubiE/COQ5 methyltransferase family SH03_RS00660 PF02036 SCP-2 sterol transfer family SH03_RS00665 PF03109 ABC1 family SH03_RS00670 PF02416 mttA/Hcf106 family SH03_RS00680 PF00902 Sec-independent protein translocase protein (TatC) SH03_RS00685 PF01026 TatD related DNase SH03_RS00690 PF02357 Transcription termination factor nusG SH03_RS00695 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SH03_RS00700 PF00970 Oxidoreductase FAD-binding domain SH03_RS00700 PF00175 Oxidoreductase NAD-binding domain SH03_RS00705 PF02803 Thiolase, C-terminal domain SH03_RS00705 PF00108 Thiolase, N-terminal domain SH03_RS00710 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH03_RS00710 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH03_RS00710 PF00378 Enoyl-CoA hydratase/isomerase SH03_RS00715 PF00557 Metallopeptidase family M24 SH03_RS00720 PF01205 Uncharacterized protein family UPF0029 SH03_RS00720 PF09186 Domain of unknown function (DUF1949) SH03_RS00725 PF02386 Cation transport protein SH03_RS00730 PF12724 Flavodoxin domain SH03_RS00760 PF03205 Molybdopterin guanine dinucleotide synthesis protein B SH03_RS00765 PF12804 MobA-like NTP transferase domain SH03_RS00770 PF06288 Protein of unknown function (DUF1040) SH03_RS00775 PF01636 Phosphotransferase enzyme family SH03_RS00780 PF01323 DSBA-like thioredoxin domain SH03_RS00785 PF06097 Bacterial protein of unknown function (DUF945) SH03_RS00790 PF01553 Acyltransferase SH03_RS00800 PF00476 DNA polymerase family A SH03_RS00800 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SH03_RS00800 PF01612 3'-5' exonuclease SH03_RS00800 PF01367 5'-3' exonuclease, C-terminal SAM fold SH03_RS00805 PF01926 50S ribosome-binding GTPase SH03_RS00810 PF04220 Der GTPase activator (YihI) SH03_RS00815 PF06969 HemN C-terminal domain SH03_RS00815 PF04055 Radical SAM superfamily SH03_RS00825 PF02954 Bacterial regulatory protein, Fis family SH03_RS00825 PF00072 Response regulator receiver domain SH03_RS00825 PF00158 Sigma-54 interaction domain SH03_RS00830 PF00989 PAS fold SH03_RS00830 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS00830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS00835 PF03951 Glutamine synthetase, beta-Grasp domain SH03_RS00835 PF00120 Glutamine synthetase, catalytic domain SH03_RS00845 PF00679 Elongation factor G C-terminus SH03_RS00845 PF03144 Elongation factor Tu domain 2 SH03_RS00845 PF00009 Elongation factor Tu GTP binding domain SH03_RS00850 PF00392 Bacterial regulatory proteins, gntR family SH03_RS00850 PF07702 UTRA domain SH03_RS00855 PF01261 Xylose isomerase-like TIM barrel SH03_RS00860 PF07690 Major Facilitator Superfamily SH03_RS00865 PF06178 Oligogalacturonate-specific porin protein (KdgM) SH03_RS00880 PF01055 Glycosyl hydrolases family 31 SH03_RS00885 PF01263 Aldose 1-epimerase SH03_RS00895 PF01791 DeoC/LacD family aldolase SH03_RS00900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH03_RS00900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH03_RS00905 PF00294 pfkB family carbohydrate kinase SH03_RS00910 PF00455 DeoR C terminal sensor domain SH03_RS00910 PF08220 DeoR-like helix-turn-helix domain SH03_RS00915 PF13419 Haloacid dehalogenase-like hydrolase SH03_RS00920 PF03631 Virulence factor BrkB SH03_RS00925 PF02580 D-Tyr-tRNA(Tyr) deacylase SH03_RS00930 PF00583 Acetyltransferase (GNAT) family SH03_RS00930 PF09500 Putative thioesterase (yiiD_Cterm) SH03_RS00935 PF01402 Ribbon-helix-helix protein, copG family SH03_RS00950 PF04216 Protein involved in formate dehydrogenase formation SH03_RS00955 PF01292 Prokaryotic cytochrome b561 SH03_RS00960 PF13247 4Fe-4S dicluster domain SH03_RS00960 PF09163 Formate dehydrogenase N, transmembrane SH03_RS00965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS00965 PF01568 Molydopterin dinucleotide binding domain SH03_RS00965 PF00384 Molybdopterin oxidoreductase SH03_RS00970 PF01568 Molydopterin dinucleotide binding domain SH03_RS00970 PF00384 Molybdopterin oxidoreductase SH03_RS00970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS00975 PF02634 FdhD/NarQ family SH03_RS00980 PF12889 Protein of unknown function (DUF3829) SH03_RS00985 PF08279 HTH domain SH03_RS00985 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH03_RS00990 PF05343 M42 glutamyl aminopeptidase SH03_RS00995 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH03_RS00995 PF02378 Phosphotransferase system, EIIC SH03_RS01000 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH03_RS01005 PF05336 L-rhamnose mutarotase SH03_RS01010 PF00596 Class II Aldolase and Adducin N-terminal domain SH03_RS01015 PF06134 L-rhamnose isomerase (RhaA) SH03_RS01020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH03_RS01020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH03_RS01030 PF02311 AraC-like ligand binding domain SH03_RS01030 PF12833 Helix-turn-helix domain SH03_RS01035 PF02311 AraC-like ligand binding domain SH03_RS01035 PF12833 Helix-turn-helix domain SH03_RS01040 PF06379 L-rhamnose-proton symport protein (RhaT) SH03_RS01045 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SH03_RS01045 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SH03_RS01055 PF03812 2-keto-3-deoxygluconate permease SH03_RS01060 PF03475 3-alpha domain SH03_RS01060 PF03473 MOSC domain SH03_RS01065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS01065 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS01065 PF16527 Two-component sensor protein CpxA, periplasmic domain SH03_RS01065 PF00672 HAMP domain SH03_RS01070 PF00486 Transcriptional regulatory protein, C terminal SH03_RS01070 PF00072 Response regulator receiver domain SH03_RS01075 PF07813 LTXXQ motif family protein SH03_RS01080 PF01545 Cation efflux family SH03_RS01080 PF16916 Dimerisation domain of Zinc Transporter SH03_RS01085 PF00365 Phosphofructokinase SH03_RS01095 PF02611 CDP-diacylglycerol pyrophosphatase SH03_RS01100 PF00121 Triosephosphate isomerase SH03_RS01105 PF07305 Protein of unknown function (DUF1454) SH03_RS01110 PF05656 Protein of unknown function (DUF805) SH03_RS01115 PF04175 Protein of unknown function (DUF406) SH03_RS01120 PF00582 Universal stress protein family SH03_RS01125 PF00970 Oxidoreductase FAD-binding domain SH03_RS01125 PF00175 Oxidoreductase NAD-binding domain SH03_RS01130 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded SH03_RS01135 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH03_RS01135 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH03_RS01140 PF00230 Major intrinsic protein SH03_RS01145 PF06005 Cell division protein ZapB SH03_RS01150 PF03737 Aldolase/RraA SH03_RS01155 PF01040 UbiA prenyltransferase family SH03_RS01160 PF10431 C-terminal, D2-small domain, of ClpB protein SH03_RS01160 PF00004 ATPase family associated with various cellular activities (AAA) SH03_RS01160 PF07724 AAA domain (Cdc48 subfamily) SH03_RS01165 PF00227 Proteasome subunit SH03_RS01170 PF05036 Sporulation related domain SH03_RS01175 PF00356 Bacterial regulatory proteins, lacI family SH03_RS01180 PF00270 DEAD/DEAH box helicase SH03_RS01180 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SH03_RS01180 PF18074 Primosomal protein N C-terminal domain SH03_RS01180 PF17764 3′ DNA-binding domain (3′BD) SH03_RS01180 PF00271 Helicase conserved C-terminal domain SH03_RS01185 PF01197 Ribosomal protein L31 SH03_RS01190 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH03_RS01195 PF01340 Met Apo-repressor, MetJ SH03_RS01205 PF00696 Amino acid kinase family SH03_RS01205 PF03447 Homoserine dehydrogenase, NAD binding domain SH03_RS01205 PF00742 Homoserine dehydrogenase SH03_RS01215 PF02219 Methylenetetrahydrofolate reductase SH03_RS01220 PF00141 Peroxidase SH03_RS01225 PF00892 EamA-like transporter family SH03_RS01230 PF06940 Domain of unknown function (DUF1287) SH03_RS01240 PF00465 Iron-containing alcohol dehydrogenase SH03_RS01245 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH03_RS01250 PF00381 PTS HPr component phosphorylation site SH03_RS01250 PF05524 PEP-utilising enzyme, N-terminal SH03_RS01250 PF00391 PEP-utilising enzyme, mobile domain SH03_RS01250 PF02896 PEP-utilising enzyme, TIM barrel domain SH03_RS01250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH03_RS01260 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH03_RS01265 PF02901 Pyruvate formate lyase-like SH03_RS01265 PF01228 Glycine radical SH03_RS01270 PF04055 Radical SAM superfamily SH03_RS01275 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH03_RS01280 PF12833 Helix-turn-helix domain SH03_RS01285 PF00884 Sulfatase SH03_RS01290 PF00311 Phosphoenolpyruvate carboxylase SH03_RS01300 PF07687 Peptidase dimerisation domain SH03_RS01300 PF01546 Peptidase family M20/M25/M40 SH03_RS01305 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH03_RS01305 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH03_RS01310 PF00696 Amino acid kinase family SH03_RS01315 PF14698 Argininosuccinate lyase C-terminal SH03_RS01315 PF00206 Lyase SH03_RS01320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS01320 PF03466 LysR substrate binding domain SH03_RS01325 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH03_RS01325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH03_RS01330 PF00440 Bacterial regulatory proteins, tetR family SH03_RS01335 PF07226 Protein of unknown function (DUF1422) SH03_RS01340 PF05958 tRNA (Uracil-5-)-methyltransferase SH03_RS01345 PF07715 TonB-dependent Receptor Plug Domain SH03_RS01345 PF00593 TonB dependent receptor SH03_RS01350 PF01177 Asp/Glu/Hydantoin racemase SH03_RS01375 PF01565 FAD binding domain SH03_RS01375 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SH03_RS01380 PF02237 Biotin protein ligase C terminal domain SH03_RS01380 PF03099 Biotin/lipoate A/B protein ligase family SH03_RS01380 PF08279 HTH domain SH03_RS01385 PF00485 Phosphoribulokinase / Uridine kinase family SH03_RS01415 PF00009 Elongation factor Tu GTP binding domain SH03_RS01415 PF03144 Elongation factor Tu domain 2 SH03_RS01415 PF03143 Elongation factor Tu C-terminal domain SH03_RS01420 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SH03_RS01425 PF00467 KOW motif SH03_RS01425 PF02357 Transcription termination factor nusG SH03_RS01430 PF00298 Ribosomal protein L11, RNA binding domain SH03_RS01430 PF03946 Ribosomal protein L11, N-terminal domain SH03_RS01435 PF00687 Ribosomal protein L1p/L10e family SH03_RS01440 PF00466 Ribosomal protein L10 SH03_RS01445 PF00542 Ribosomal protein L7/L12 C-terminal domain SH03_RS01445 PF16320 Ribosomal protein L7/L12 dimerisation domain SH03_RS01450 PF04561 RNA polymerase Rpb2, domain 2 SH03_RS01450 PF04565 RNA polymerase Rpb2, domain 3 SH03_RS01450 PF10385 RNA polymerase beta subunit external 1 domain SH03_RS01450 PF00562 RNA polymerase Rpb2, domain 6 SH03_RS01450 PF04560 RNA polymerase Rpb2, domain 7 SH03_RS01450 PF04563 RNA polymerase beta subunit SH03_RS01455 PF04998 RNA polymerase Rpb1, domain 5 SH03_RS01455 PF00623 RNA polymerase Rpb1, domain 2 SH03_RS01455 PF05000 RNA polymerase Rpb1, domain 4 SH03_RS01455 PF04983 RNA polymerase Rpb1, domain 3 SH03_RS01455 PF04997 RNA polymerase Rpb1, domain 1 SH03_RS01465 PF04055 Radical SAM superfamily SH03_RS01465 PF06968 Biotin and Thiamin Synthesis associated domain SH03_RS01470 PF05690 Thiazole biosynthesis protein ThiG SH03_RS01475 PF02597 ThiS family SH03_RS01480 PF00899 ThiF family SH03_RS01485 PF02581 Thiamine monophosphate synthase SH03_RS01490 PF01964 Radical SAM ThiC family SH03_RS01490 PF13667 ThiC-associated domain SH03_RS01495 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ SH03_RS01500 PF00293 NUDIX domain SH03_RS01500 PF09297 NADH pyrophosphatase zinc ribbon domain SH03_RS01505 PF01208 Uroporphyrinogen decarboxylase (URO-D) SH03_RS01510 PF04493 Endonuclease V SH03_RS01515 PF04222 Protein of unknown function (DUF416) SH03_RS01520 PF00216 Bacterial DNA-binding protein SH03_RS01525 PF07356 Protein of unknown function (DUF1481) SH03_RS01530 PF13801 Heavy-metal resistance SH03_RS01535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS01535 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS01540 PF00158 Sigma-54 interaction domain SH03_RS01540 PF00072 Response regulator receiver domain SH03_RS01540 PF02954 Bacterial regulatory protein, Fis family SH03_RS01545 PF02844 Phosphoribosylglycinamide synthetase, N domain SH03_RS01545 PF02843 Phosphoribosylglycinamide synthetase, C domain SH03_RS01545 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SH03_RS01550 PF02142 MGS-like domain SH03_RS01550 PF01808 AICARFT/IMPCHase bienzyme SH03_RS01590 PF13673 Acetyltransferase (GNAT) domain SH03_RS01595 PF04204 Homoserine O-succinyltransferase SH03_RS01600 PF01274 Malate synthase SH03_RS01605 PF00463 Isocitrate lyase family SH03_RS01610 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) SH03_RS01615 PF07906 ShET2 enterotoxin, N-terminal region SH03_RS01620 PF09339 IclR helix-turn-helix domain SH03_RS01620 PF01614 Bacterial transcriptional regulator SH03_RS01625 PF02310 B12 binding domain SH03_RS01625 PF02607 B12 binding domain SH03_RS01625 PF02965 Vitamin B12 dependent methionine synthase, activation domain SH03_RS01625 PF02574 Homocysteine S-methyltransferase SH03_RS01625 PF00809 Pterin binding enzyme SH03_RS01630 PF02690 Na+/Pi-cotransporter SH03_RS01635 PF03575 Peptidase family S51 SH03_RS01640 PF01479 S4 domain SH03_RS01640 PF00849 RNA pseudouridylate synthase SH03_RS01645 PF11656 YjbD family (DUF3811) SH03_RS01650 PF00696 Amino acid kinase family SH03_RS01650 PF01842 ACT domain SH03_RS01655 PF00342 Phosphoglucose isomerase SH03_RS01660 PF03400 IS1 transposase SH03_RS01665 PF03811 InsA N-terminal domain SH03_RS01665 PF12759 InsA C-terminal domain SH03_RS01670 PF11106 Exopolysaccharide production protein YjbE SH03_RS01675 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF SH03_RS01680 PF06251 Capsule biosynthesis GfcC SH03_RS01685 PF06082 Exopolysaccharide biosynthesis protein YbjH SH03_RS01690 PF17089 Uncharacterised protein family SH03_RS01700 PF06146 Phosphate-starvation-inducible E SH03_RS01705 PF00083 Sugar (and other) transporter SH03_RS01710 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS01715 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS01715 PF14785 Maltose transport system permease protein MalF P2 domain SH03_RS01720 PF01547 Bacterial extracellular solute-binding protein SH03_RS01730 PF17912 MalK OB fold domain SH03_RS01730 PF00005 ABC transporter SH03_RS01735 PF02264 LamB porin SH03_RS01740 PF07148 Maltose operon periplasmic protein precursor (MalM) SH03_RS01750 PF13981 SopA-like central domain SH03_RS01750 PF13599 Pentapeptide repeats (9 copies) SH03_RS01755 PF04345 Chorismate lyase SH03_RS01760 PF01040 UbiA prenyltransferase family SH03_RS01765 PF01553 Acyltransferase SH03_RS01770 PF01219 Prokaryotic diacylglycerol kinase SH03_RS01775 PF01726 LexA DNA binding domain SH03_RS01775 PF00717 Peptidase S24-like SH03_RS01780 PF01554 MatE SH03_RS01785 PF05532 CsbD-like SH03_RS01790 PF01475 Ferric uptake regulator family SH03_RS01800 PF10897 Protein of unknown function (DUF2713) SH03_RS01805 PF01207 Dihydrouridine synthase (Dus) SH03_RS01810 PF09583 Phage shock protein G (Phageshock_PspG) SH03_RS01815 PF00107 Zinc-binding dehydrogenase SH03_RS01815 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS01820 PF03796 DnaB-like helicase C terminal domain SH03_RS01820 PF00772 DnaB-like helicase N terminal domain SH03_RS01825 PF00842 Alanine racemase, C-terminal domain SH03_RS01825 PF01168 Alanine racemase, N-terminal domain SH03_RS01830 PF00155 Aminotransferase class I and II SH03_RS01840 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SH03_RS01845 PF01894 Uncharacterised protein family UPF0047 SH03_RS01850 PF04237 YjbR SH03_RS01855 PF17760 UvrA interaction domain SH03_RS01855 PF17755 UvrA DNA-binding domain SH03_RS01855 PF00005 ABC transporter SH03_RS01860 PF00436 Single-strand binding protein family SH03_RS01865 PF15940 Family of unknown function SH03_RS01870 PF00563 EAL domain SH03_RS01870 PF12792 CSS motif domain associated with EAL SH03_RS01875 PF12833 Helix-turn-helix domain SH03_RS01880 PF00376 MerR family regulatory protein SH03_RS01880 PF09278 MerR, DNA binding SH03_RS01885 PF00860 Permease family SH03_RS01890 PF00999 Sodium/hydrogen exchanger family SH03_RS01895 PF00805 Pentapeptide repeats (8 copies) SH03_RS01900 PF00474 Sodium:solute symporter family SH03_RS01905 PF04341 Protein of unknown function, DUF485 SH03_RS01910 PF16177 Acetyl-coenzyme A synthetase N-terminus SH03_RS01910 PF00501 AMP-binding enzyme SH03_RS01910 PF13193 AMP-binding enzyme C-terminal domain SH03_RS01915 PF02335 Cytochrome c552 SH03_RS01920 PF13435 Cytochrome c554 and c-prime SH03_RS01920 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) SH03_RS01925 PF13247 4Fe-4S dicluster domain SH03_RS01925 PF00037 4Fe-4S binding domain SH03_RS01930 PF03916 Polysulphide reductase, NrfD SH03_RS01935 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SH03_RS01935 PF01578 Cytochrome C assembly protein SH03_RS01940 PF03918 Cytochrome C biogenesis protein SH03_RS01950 PF00375 Sodium:dicarboxylate symporter family SH03_RS01955 PF08238 Sel1 repeat SH03_RS01960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS01960 PF00384 Molybdopterin oxidoreductase SH03_RS01960 PF01568 Molydopterin dinucleotide binding domain SH03_RS01965 PF01568 Molydopterin dinucleotide binding domain SH03_RS01965 PF00384 Molybdopterin oxidoreductase SH03_RS01965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS01970 PF02321 Outer membrane efflux protein SH03_RS01975 PF04632 Fusaric acid resistance protein family SH03_RS01980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH03_RS01980 PF00529 HlyD membrane-fusion protein of T1SS SH03_RS01985 PF17090 Uncharacterised protein family SH03_RS01990 PF14863 Alkyl sulfatase dimerisation SH03_RS01990 PF00753 Metallo-beta-lactamase superfamily SH03_RS01990 PF14864 Alkyl sulfatase C-terminal SH03_RS01995 PF00480 ROK family SH03_RS02000 PF00834 Ribulose-phosphate 3 epimerase family SH03_RS02005 PF02653 Branched-chain amino acid transport system / permease component SH03_RS02010 PF00005 ABC transporter SH03_RS02015 PF13407 Periplasmic binding protein domain SH03_RS02020 PF01418 Helix-turn-helix domain, rpiR family SH03_RS02020 PF01380 SIS domain SH03_RS02025 PF02502 Ribose/Galactose Isomerase SH03_RS02035 PF12706 Beta-lactamase superfamily domain SH03_RS02040 PF00583 Acetyltransferase (GNAT) family SH03_RS02050 PF07969 Amidohydrolase family SH03_RS02055 PF00005 ABC transporter SH03_RS02060 PF00005 ABC transporter SH03_RS02065 PF06007 Phosphonate metabolism protein PhnJ SH03_RS02070 PF05861 Bacterial phosphonate metabolism protein (PhnI) SH03_RS02075 PF05845 Bacterial phosphonate metabolism protein (PhnH) SH03_RS02080 PF06754 Phosphonate metabolism protein PhnG SH03_RS02085 PF00392 Bacterial regulatory proteins, gntR family SH03_RS02085 PF07702 UTRA domain SH03_RS02100 PF00005 ABC transporter SH03_RS02105 PF06983 3-demethylubiquinone-9 3-methyltransferase SH03_RS02110 PF08274 PhnA Zinc-Ribbon SH03_RS02110 PF03831 PhnA domain SH03_RS02115 PF00350 Dynamin family SH03_RS02120 PF13990 YjcZ-like protein SH03_RS02125 PF08946 Osmosensory transporter coiled coil SH03_RS02125 PF00083 Sugar (and other) transporter SH03_RS02135 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS02135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS02140 PF00072 Response regulator receiver domain SH03_RS02140 PF00486 Transcriptional regulatory protein, C terminal SH03_RS02145 PF08019 Phosphoethanolamine transferase EptA/EptB SH03_RS02145 PF00884 Sulfatase SH03_RS02150 PF13520 Amino acid permease SH03_RS02155 PF12833 Helix-turn-helix domain SH03_RS02160 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH03_RS02160 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH03_RS02160 PF01276 Orn/Lys/Arg decarboxylase, major domain SH03_RS02165 PF12833 Helix-turn-helix domain SH03_RS02175 PF11975 Family 4 glycosyl hydrolase C-terminal domain SH03_RS02175 PF02056 Family 4 glycosyl hydrolase SH03_RS02185 PF09997 Predicted membrane protein (DUF2238) SH03_RS02190 PF05681 Fumarate hydratase (Fumerase) SH03_RS02190 PF05683 Fumarase C-terminus SH03_RS02195 PF03605 Anaerobic c4-dicarboxylate membrane transporter SH03_RS02205 PF00072 Response regulator receiver domain SH03_RS02210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS02210 PF17203 Single cache domain 3 SH03_RS02210 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SH03_RS02210 PF00989 PAS fold SH03_RS02215 PF06902 Divergent 4Fe-4S mono-cluster SH03_RS02220 PF14542 GCN5-related N-acetyl-transferase SH03_RS02230 PF11080 Endoribonuclease GhoS SH03_RS02235 PF10753 Toxin GhoT_OrtT SH03_RS02240 PF00152 tRNA synthetases class II (D, K and N) SH03_RS02240 PF01336 OB-fold nucleic acid binding domain SH03_RS02245 PF00854 POT family SH03_RS02250 PF01276 Orn/Lys/Arg decarboxylase, major domain SH03_RS02250 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH03_RS02250 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH03_RS02255 PF13520 Amino acid permease SH03_RS02260 PF18500 CadC C-terminal domain 1 SH03_RS02260 PF00486 Transcriptional regulatory protein, C terminal SH03_RS02275 PF02683 Cytochrome C biogenesis protein transmembrane region SH03_RS02275 PF11412 Disulphide bond corrector protein DsbC SH03_RS02280 PF03091 CutA1 divalent ion tolerance protein SH03_RS02285 PF03605 Anaerobic c4-dicarboxylate membrane transporter SH03_RS02290 PF10415 Fumarase C C-terminus SH03_RS02290 PF00206 Lyase SH03_RS02295 PF04186 FxsA cytoplasmic membrane protein SH03_RS02300 PF13520 Amino acid permease SH03_RS02305 PF00166 Chaperonin 10 Kd subunit SH03_RS02310 PF00118 TCP-1/cpn60 chaperonin family SH03_RS02315 PF13698 Domain of unknown function (DUF4156) SH03_RS02320 PF15922 YjeJ-like SH03_RS02325 PF04055 Radical SAM superfamily SH03_RS02330 PF09285 Elongation factor P, C-terminal SH03_RS02330 PF08207 Elongation factor P (EF-P) KOW-like domain SH03_RS02330 PF01132 Elongation factor P (EF-P) OB domain SH03_RS02335 PF08085 Entericidin EcnA/B family SH03_RS02340 PF08085 Entericidin EcnA/B family SH03_RS02345 PF00893 Small Multidrug Resistance protein SH03_RS02350 PF08212 Lipocalin-like domain SH03_RS02355 PF00144 Beta-lactamase SH03_RS02360 PF02313 Fumarate reductase subunit D SH03_RS02365 PF02300 Fumarate reductase subunit C SH03_RS02370 PF13085 2Fe-2S iron-sulfur cluster binding domain SH03_RS02370 PF13183 4Fe-4S dicluster domain SH03_RS02375 PF00890 FAD binding domain SH03_RS02375 PF02910 Fumarate reductase flavoprotein C-term SH03_RS02380 PF00152 tRNA synthetases class II (D, K and N) SH03_RS02385 PF13520 Amino acid permease SH03_RS02395 PF10840 Protein of unknown function (DUF2645) SH03_RS02400 PF00924 Mechanosensitive ion channel SH03_RS02400 PF12794 Mechanosensitive ion channel inner membrane domain 1 SH03_RS02400 PF12795 Mechanosensitive ion channel porin domain SH03_RS02405 PF02666 Phosphatidylserine decarboxylase SH03_RS02410 PF03193 RsgA GTPase SH03_RS02415 PF00929 Exonuclease SH03_RS02435 PF08331 Domain of unknown function (DUF1730) SH03_RS02440 PF01256 Carbohydrate kinase SH03_RS02440 PF03853 YjeF-related protein N-terminus SH03_RS02445 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SH03_RS02450 PF01520 N-acetylmuramoyl-L-alanine amidase SH03_RS02455 PF01119 DNA mismatch repair protein, C-terminal domain SH03_RS02455 PF08676 MutL C terminal dimerisation domain SH03_RS02465 PF17209 Hfq protein SH03_RS02470 PF13167 GTP-binding GTPase N-terminal SH03_RS02470 PF16360 GTP-binding GTPase Middle Region SH03_RS02470 PF01926 50S ribosome-binding GTPase SH03_RS02475 PF12221 Bacterial membrane protein N terminal SH03_RS02475 PF01145 SPFH domain / Band 7 family SH03_RS02480 PF01145 SPFH domain / Band 7 family SH03_RS02485 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) SH03_RS02490 PF00709 Adenylosuccinate synthetase SH03_RS02495 PF02082 Transcriptional regulator SH03_RS02500 PF00773 RNB domain SH03_RS02500 PF17876 Cold shock domain SH03_RS02500 PF00575 S1 RNA binding domain SH03_RS02500 PF08206 Ribonuclease B OB domain SH03_RS02500 PF08461 Ribonuclease R winged-helix domain SH03_RS02505 PF00588 SpoU rRNA Methylase family SH03_RS02505 PF08032 RNA 2'-O ribose methyltransferase substrate binding SH03_RS02510 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) SH03_RS02515 PF04012 PspA/IM30 family SH03_RS02520 PF10679 Protein of unknown function (DUF2491) SH03_RS02525 PF03994 Domain of Unknown Function (DUF350) SH03_RS02530 PF06693 Protein of unknown function (DUF1190) SH03_RS02535 PF03738 Glutathionylspermidine synthase preATP-grasp SH03_RS02540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH03_RS02540 PF02770 Acyl-CoA dehydrogenase, middle domain SH03_RS02540 PF18158 Adaptive response protein AidB N-terminal domain SH03_RS02545 PF07338 Protein of unknown function (DUF1471) SH03_RS02550 PF07338 Protein of unknown function (DUF1471) SH03_RS02555 PF00326 Prolyl oligopeptidase family SH03_RS02560 PF00455 DeoR C terminal sensor domain SH03_RS02560 PF08220 DeoR-like helix-turn-helix domain SH03_RS02570 PF03611 PTS system sugar-specific permease component SH03_RS02575 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH03_RS02580 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH03_RS02585 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH03_RS02590 PF01261 Xylose isomerase-like TIM barrel SH03_RS02595 PF00596 Class II Aldolase and Adducin N-terminal domain SH03_RS02600 PF07338 Protein of unknown function (DUF1471) SH03_RS02610 PF01250 Ribosomal protein S6 SH03_RS02615 PF00436 Single-strand binding protein family SH03_RS02620 PF01084 Ribosomal protein S18 SH03_RS02625 PF03948 Ribosomal protein L9, C-terminal domain SH03_RS02625 PF01281 Ribosomal protein L9, N-terminal domain SH03_RS02630 PF10887 Protein of unknown function (DUF2686) SH03_RS02635 PF17938 Tetracyclin repressor-like, C-terminal domain SH03_RS02640 PF08525 Opacity-associated protein A N-terminal motif SH03_RS02640 PF04225 Opacity-associated protein A LysM-like domain SH03_RS02645 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH03_RS02645 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SH03_RS02650 PF00324 Amino acid permease SH03_RS02655 PF01814 Hemerythrin HHE cation binding domain SH03_RS02655 PF04405 Domain of Unknown function (DUF542) SH03_RS02660 PF00892 EamA-like transporter family SH03_RS02665 PF05368 NmrA-like family SH03_RS02670 PF01638 HxlR-like helix-turn-helix SH03_RS02675 PF00149 Calcineurin-like phosphoesterase SH03_RS02675 PF02872 5'-nucleotidase, C-terminal domain SH03_RS02680 PF00459 Inositol monophosphatase family SH03_RS02690 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) SH03_RS02695 PF06526 Protein of unknown function (DUF1107) SH03_RS02700 PF01595 Cyclin M transmembrane N-terminal domain SH03_RS02700 PF03471 Transporter associated domain SH03_RS02700 PF00571 CBS domain SH03_RS02705 PF01625 Peptide methionine sulfoxide reductase SH03_RS02715 PF01103 Surface antigen SH03_RS02715 PF07244 Surface antigen variable number repeat SH03_RS02715 PF17243 POTRA domain TamA domain 1 SH03_RS02720 PF04357 TamB, inner membrane protein subunit of TAM complex SH03_RS02725 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like SH03_RS02730 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SH03_RS02735 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SH03_RS02740 PF00719 Inorganic pyrophosphatase SH03_RS02745 PF13407 Periplasmic binding protein domain SH03_RS02750 PF00005 ABC transporter SH03_RS02755 PF02653 Branched-chain amino acid transport system / permease component SH03_RS02760 PF02653 Branched-chain amino acid transport system / permease component SH03_RS02765 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SH03_RS02770 PF01225 Mur ligase family, catalytic domain SH03_RS02770 PF02875 Mur ligase family, glutamate ligase domain SH03_RS02770 PF08245 Mur ligase middle domain SH03_RS02775 PF04751 Protein of unknown function (DUF615) SH03_RS02780 PF01523 Putative modulator of DNA gyrase SH03_RS02785 PF07361 Cytochrome b562 SH03_RS02795 PF13597 Anaerobic ribonucleoside-triphosphate reductase SH03_RS02795 PF03477 ATP cone domain SH03_RS02800 PF00128 Alpha amylase, catalytic domain SH03_RS02800 PF11941 Domain of unknown function (DUF3459) SH03_RS02805 PF02378 Phosphotransferase system, EIIC SH03_RS02805 PF00367 phosphotransferase system, EIIB SH03_RS02810 PF00356 Bacterial regulatory proteins, lacI family SH03_RS02815 PF00690 Cation transporter/ATPase, N-terminus SH03_RS02815 PF00689 Cation transporting ATPase, C-terminus SH03_RS02820 PF01042 Endoribonuclease L-PSP SH03_RS02825 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain SH03_RS02825 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain SH03_RS02830 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH03_RS02830 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH03_RS02835 PF08052 PyrBI operon leader peptide SH03_RS02845 PF01042 Endoribonuclease L-PSP SH03_RS02855 PF00440 Bacterial regulatory proteins, tetR family SH03_RS02860 PF04074 YhcH/YjgK/YiaL SH03_RS02870 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH03_RS02870 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH03_RS02875 PF06877 Regulator of ribonuclease activity B SH03_RS02880 PF00583 Acetyltransferase (GNAT) family SH03_RS02885 PF05987 Bacterial protein of unknown function (DUF898) SH03_RS02890 PF08264 Anticodon-binding domain of tRNA SH03_RS02890 PF00133 tRNA synthetases class I (I, L, M and V) SH03_RS02890 PF10458 Valyl tRNA synthetase tRNA binding arm SH03_RS02895 PF04364 DNA polymerase III chi subunit, HolC SH03_RS02900 PF00883 Cytosol aminopeptidase family, catalytic domain SH03_RS02900 PF02789 Cytosol aminopeptidase family, N-terminal domain SH03_RS02905 PF03739 Lipopolysaccharide export system permease LptF/LptG SH03_RS02910 PF03739 Lipopolysaccharide export system permease LptF/LptG SH03_RS02915 PF05872 Bacterial protein of unknown function (DUF853) SH03_RS02920 PF00356 Bacterial regulatory proteins, lacI family SH03_RS02925 PF02447 GntP family permease SH03_RS02930 PF00106 short chain dehydrogenase SH03_RS02935 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS02935 PF00107 Zinc-binding dehydrogenase SH03_RS02940 PF01202 Shikimate kinase SH03_RS02945 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS02945 PF00107 Zinc-binding dehydrogenase SH03_RS02955 PF13356 Arm DNA-binding domain SH03_RS02955 PF00589 Phage integrase family SH03_RS02965 PF01527 Transposase SH03_RS02970 PF13276 HTH-like domain SH03_RS02970 PF00665 Integrase core domain SH03_RS03000 PF13006 Insertion element 4 transposase N-terminal SH03_RS03000 PF01609 Transposase DDE domain SH03_RS03005 PF07690 Major Facilitator Superfamily SH03_RS03010 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH03_RS03010 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH03_RS03015 PF16747 Surface-adhesin protein E SH03_RS03020 PF11700 Vacuole effluxer Atg22 like SH03_RS03025 PF01527 Transposase SH03_RS03030 PF13936 Helix-turn-helix domain SH03_RS03030 PF00665 Integrase core domain SH03_RS03035 PF01527 Transposase SH03_RS03050 PF00005 ABC transporter SH03_RS03055 PF01032 FecCD transport family SH03_RS03060 PF01032 FecCD transport family SH03_RS03065 PF01497 Periplasmic binding protein SH03_RS03070 PF07715 TonB-dependent Receptor Plug Domain SH03_RS03070 PF00593 TonB dependent receptor SH03_RS03070 PF07660 Secretin and TonB N terminus short domain SH03_RS03075 PF16220 Domain of unknown function (DUF4880) SH03_RS03075 PF04773 FecR protein SH03_RS03080 PF08281 Sigma-70, region 4 SH03_RS03080 PF04542 Sigma-70 region 2 SH03_RS03095 PF03400 IS1 transposase SH03_RS03100 PF04198 Putative sugar-binding domain SH03_RS03110 PF02447 GntP family permease SH03_RS03115 PF00920 Dehydratase family SH03_RS03120 PF00701 Dihydrodipicolinate synthetase family SH03_RS03125 PF01614 Bacterial transcriptional regulator SH03_RS03130 PF08220 DeoR-like helix-turn-helix domain SH03_RS03130 PF00455 DeoR C terminal sensor domain SH03_RS03135 PF00834 Ribulose-phosphate 3 epimerase family SH03_RS03140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH03_RS03145 PF03437 BtpA family SH03_RS03150 PF03611 PTS system sugar-specific permease component SH03_RS03155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH03_RS03160 PF05343 M42 glutamyl aminopeptidase SH03_RS03165 PF13847 Methyltransferase domain SH03_RS03170 PF00583 Acetyltransferase (GNAT) family SH03_RS03175 PF09857 Putative toxin of bacterial toxin-antitoxin pair SH03_RS03190 PF13087 AAA domain SH03_RS03190 PF13091 PLD-like domain SH03_RS03195 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase SH03_RS03205 PF06178 Oligogalacturonate-specific porin protein (KdgM) SH03_RS03220 PF00589 Phage integrase family SH03_RS03225 PF03400 IS1 transposase SH03_RS03230 PF00589 Phage integrase family SH03_RS03240 PF00419 Fimbrial protein SH03_RS03245 PF00419 Fimbrial protein SH03_RS03250 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH03_RS03250 PF02753 Pili assembly chaperone PapD, C-terminal domain SH03_RS03255 PF13954 PapC N-terminal domain SH03_RS03255 PF00577 Outer membrane usher protein SH03_RS03255 PF13953 PapC C-terminal domain SH03_RS03260 PF00419 Fimbrial protein SH03_RS03270 PF09160 FimH, mannose binding SH03_RS03270 PF00419 Fimbrial protein SH03_RS03275 PF02447 GntP family permease SH03_RS03285 PF03786 D-mannonate dehydratase (UxuA) SH03_RS03290 PF08125 Mannitol dehydrogenase C-terminal domain SH03_RS03290 PF01232 Mannitol dehydrogenase Rossmann domain SH03_RS03300 PF00392 Bacterial regulatory proteins, gntR family SH03_RS03300 PF07729 FCD domain SH03_RS03305 PF10887 Protein of unknown function (DUF2686) SH03_RS03325 PF04965 Gene 25-like lysozyme SH03_RS03330 PF03466 LysR substrate binding domain SH03_RS03330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS03335 PF01979 Amidohydrolase family SH03_RS03340 PF07670 Nucleoside recognition SH03_RS03345 PF07670 Nucleoside recognition SH03_RS03350 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family SH03_RS03355 PF06779 Uncharacterised MFS-type transporter YbfB SH03_RS03360 PF06977 SdiA-regulated SH03_RS03365 PF11823 Protein of unknown function (DUF3343) SH03_RS03370 PF01869 BadF/BadG/BcrA/BcrD ATPase family SH03_RS03375 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SH03_RS03380 PF04286 Protein of unknown function (DUF445) SH03_RS03385 PF07690 Major Facilitator Superfamily SH03_RS03395 PF00392 Bacterial regulatory proteins, gntR family SH03_RS03395 PF00155 Aminotransferase class I and II SH03_RS03400 PF06568 Domain of unknown function (DUF1127) SH03_RS03415 PF10117 McrBC 5-methylcytosine restriction system component SH03_RS03420 PF12102 Domain of unknown function (DUF3578) SH03_RS03420 PF07728 AAA domain (dynein-related subfamily) SH03_RS03425 PF08845 Toxin SymE, type I toxin-antitoxin system SH03_RS03430 PF01420 Type I restriction modification DNA specificity domain SH03_RS03435 PF02384 N-6 DNA Methylase SH03_RS03440 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SH03_RS03440 PF00271 Helicase conserved C-terminal domain SH03_RS03440 PF08463 EcoEI R protein C-terminal SH03_RS03440 PF04851 Type III restriction enzyme, res subunit SH03_RS03445 PF07690 Major Facilitator Superfamily SH03_RS03450 PF00440 Bacterial regulatory proteins, tetR family SH03_RS03450 PF02909 Tetracyclin repressor-like, C-terminal domain SH03_RS03455 PF04471 Restriction endonuclease SH03_RS03455 PF14338 Mrr N-terminal domain SH03_RS03460 PF07683 Cobalamin synthesis protein cobW C-terminal domain SH03_RS03460 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH03_RS03465 PF04328 Selenoprotein, putative SH03_RS03470 PF02554 Carbon starvation protein CstA SH03_RS03470 PF13722 5TM C-terminal transporter carbon starvation CstA SH03_RS03480 PF00672 HAMP domain SH03_RS03480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH03_RS03480 PF02203 Tar ligand binding domain homologue SH03_RS03485 PF07690 Major Facilitator Superfamily SH03_RS03490 PF07729 FCD domain SH03_RS03490 PF00392 Bacterial regulatory proteins, gntR family SH03_RS03495 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS03495 PF00107 Zinc-binding dehydrogenase SH03_RS03500 PF00884 Sulfatase SH03_RS03505 PF10696 Protein of unknown function (DUF2501) SH03_RS03510 PF01695 IstB-like ATP binding protein SH03_RS03515 PF17948 DnaT DNA-binding domain SH03_RS03520 PF12821 Threonine/Serine exporter, ThrE SH03_RS03525 PF06738 Putative threonine/serine exporter SH03_RS03530 PF00196 Bacterial regulatory proteins, luxR family SH03_RS03535 PF00196 Bacterial regulatory proteins, luxR family SH03_RS03540 PF06276 Ferric iron reductase FhuF-like transporter SH03_RS03540 PF11575 FhuF 2Fe-2S C-terminal domain SH03_RS03545 PF07256 Protein of unknown function (DUF1435) SH03_RS03565 PF08468 Methyltransferase small domain N-terminal SH03_RS03565 PF05175 Methyltransferase small domain SH03_RS03570 PF03603 DNA polymerase III psi subunit SH03_RS03575 PF00583 Acetyltransferase (GNAT) family SH03_RS03580 PF13419 Haloacid dehalogenase-like hydrolase SH03_RS03585 PF00009 Elongation factor Tu GTP binding domain SH03_RS03585 PF03144 Elongation factor Tu domain 2 SH03_RS03585 PF16658 Class II release factor RF3, C-terminal domain SH03_RS03590 PF04972 BON domain SH03_RS03595 PF07043 Protein of unknown function (DUF1328) SH03_RS03600 PF01734 Patatin-like phospholipase SH03_RS03605 PF01026 TatD related DNase SH03_RS03610 PF04055 Radical SAM superfamily SH03_RS03615 PF11230 Protein of unknown function (DUF3029) SH03_RS03625 PF01791 DeoC/LacD family aldolase SH03_RS03630 PF02885 Glycosyl transferase family, helical bundle domain SH03_RS03630 PF00591 Glycosyl transferase family, a/b domain SH03_RS03630 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SH03_RS03635 PF01676 Metalloenzyme superfamily SH03_RS03640 PF01048 Phosphorylase superfamily SH03_RS03645 PF07804 HipA-like C-terminal domain SH03_RS03650 PF03099 Biotin/lipoate A/B protein ligase family SH03_RS03650 PF10437 Bacterial lipoate protein ligase C-terminus SH03_RS03655 PF10144 Bacterial virulence factor haemolysin SH03_RS03660 PF18429 Domain of unknown function (DUF5609) SH03_RS03665 PF18073 Rubredoxin metal binding domain SH03_RS03670 PF13521 AAA domain SH03_RS03670 PF01381 Helix-turn-helix SH03_RS03680 PF00005 ABC transporter SH03_RS03680 PF12848 ABC transporter SH03_RS03685 PF14718 Soluble lytic murein transglycosylase L domain SH03_RS03685 PF01464 Transglycosylase SLT domain SH03_RS03690 PF01371 Trp repressor protein SH03_RS03695 PF01931 Protein of unknown function DUF84 SH03_RS03700 PF00300 Histidine phosphatase superfamily (branch 1) SH03_RS03705 PF12833 Helix-turn-helix domain SH03_RS03705 PF06445 GyrI-like small molecule binding domain SH03_RS03710 PF05981 CreA protein SH03_RS03715 PF00486 Transcriptional regulatory protein, C terminal SH03_RS03715 PF00072 Response regulator receiver domain SH03_RS03720 PF00672 HAMP domain SH03_RS03720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS03720 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS03725 PF06123 Inner membrane protein CreD SH03_RS03730 PF00072 Response regulator receiver domain SH03_RS03730 PF00486 Transcriptional regulatory protein, C terminal SH03_RS03740 PF00588 SpoU rRNA Methylase family SH03_RS03745 PF08254 Threonine leader peptide SH03_RS03750 PF13840 ACT domain SH03_RS03750 PF00742 Homoserine dehydrogenase SH03_RS03750 PF00696 Amino acid kinase family SH03_RS03750 PF01842 ACT domain SH03_RS03750 PF03447 Homoserine dehydrogenase, NAD binding domain SH03_RS03755 PF08544 GHMP kinases C terminal SH03_RS03755 PF00288 GHMP kinases N terminal domain SH03_RS03760 PF00291 Pyridoxal-phosphate dependent enzyme SH03_RS03760 PF14821 Threonine synthase N terminus SH03_RS03770 PF10697 Protein of unknown function (DUF2502) SH03_RS03775 PF03883 Peroxide stress protein YaaA SH03_RS03780 PF01235 Sodium:alanine symporter family SH03_RS03785 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH03_RS03790 PF00994 Probable molybdopterin binding domain SH03_RS03795 PF01184 GPR1/FUN34/yaaH family SH03_RS03800 PF13099 Domain of unknown function (DUF3944) SH03_RS03800 PF03981 Ubiquinol-cytochrome C chaperone SH03_RS03805 PF10807 Protein of unknown function (DUF2541) SH03_RS03810 PF00012 Hsp70 protein SH03_RS03815 PF01556 DnaJ C terminal domain SH03_RS03815 PF00226 DnaJ domain SH03_RS03815 PF00684 DnaJ central domain SH03_RS03820 PF01609 Transposase DDE domain SH03_RS03825 PF01848 Hok/gef family SH03_RS03830 PF06965 Na+/H+ antiporter 1 SH03_RS03835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS03835 PF03466 LysR substrate binding domain SH03_RS03840 PF03400 IS1 transposase SH03_RS03845 PF01649 Ribosomal protein S20 SH03_RS03850 PF10837 Protein of unknown function (DUF2575) SH03_RS03855 PF06574 FAD synthetase SH03_RS03855 PF01687 Riboflavin kinase SH03_RS03860 PF06827 Zinc finger found in FPG and IleRS SH03_RS03860 PF00133 tRNA synthetases class I (I, L, M and V) SH03_RS03860 PF08264 Anticodon-binding domain of tRNA SH03_RS03865 PF01252 Signal peptidase (SPase) II SH03_RS03870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH03_RS03875 PF02401 LytB protein SH03_RS03880 PF01156 Inosine-uridine preferring nucleoside hydrolase SH03_RS03885 PF05173 Dihydrodipicolinate reductase, C-terminus SH03_RS03885 PF01113 Dihydrodipicolinate reductase, N-terminus SH03_RS03900 PF00117 Glutamine amidotransferase class-I SH03_RS03900 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SH03_RS03905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH03_RS03905 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SH03_RS03905 PF02142 MGS-like domain SH03_RS03915 PF07180 CaiF/GrlA transcriptional regulator SH03_RS03920 PF00132 Bacterial transferase hexapeptide (six repeats) SH03_RS03925 PF00378 Enoyl-CoA hydratase/isomerase SH03_RS03930 PF13193 AMP-binding enzyme C-terminal domain SH03_RS03930 PF00501 AMP-binding enzyme SH03_RS03935 PF02515 CoA-transferase family III SH03_RS03940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH03_RS03940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH03_RS03940 PF02770 Acyl-CoA dehydrogenase, middle domain SH03_RS03945 PF02028 BCCT, betaine/carnitine/choline family transporter SH03_RS03950 PF01012 Electron transfer flavoprotein domain SH03_RS03955 PF00766 Electron transfer flavoprotein FAD-binding domain SH03_RS03955 PF01012 Electron transfer flavoprotein domain SH03_RS03960 PF01494 FAD binding domain SH03_RS03970 PF00083 Sugar (and other) transporter SH03_RS03975 PF02525 Flavodoxin-like fold SH03_RS03980 PF02254 TrkA-N domain SH03_RS03980 PF00999 Sodium/hydrogen exchanger family SH03_RS03985 PF00186 Dihydrofolate reductase SH03_RS03990 PF00149 Calcineurin-like phosphoesterase SH03_RS03995 PF04379 ApaG domain SH03_RS04000 PF00398 Ribosomal RNA adenine dimethylase SH03_RS04005 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SH03_RS04010 PF09312 SurA N-terminal domain SH03_RS04010 PF00639 PPIC-type PPIASE domain SH03_RS04015 PF04453 LPS transport system D SH03_RS04015 PF03968 OstA-like protein SH03_RS04020 PF05099 Tellurite resistance protein TerB SH03_RS04020 PF00226 DnaJ domain SH03_RS04030 PF00849 RNA pseudouridylate synthase SH03_RS04035 PF00271 Helicase conserved C-terminal domain SH03_RS04035 PF18337 RapA N-terminal Tudor like domain SH03_RS04035 PF12137 RNA polymerase recycling family C-terminal SH03_RS04035 PF18339 RapA N-terminal Tudor like domain 1 SH03_RS04035 PF00176 SNF2 family N-terminal domain SH03_RS04040 PF00136 DNA polymerase family B SH03_RS04040 PF03104 DNA polymerase family B, exonuclease domain SH03_RS04045 PF00596 Class II Aldolase and Adducin N-terminal domain SH03_RS04050 PF02610 L-arabinose isomerase SH03_RS04050 PF11762 L-arabinose isomerase C-terminal domain SH03_RS04055 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH03_RS04060 PF02311 AraC-like ligand binding domain SH03_RS04060 PF12833 Helix-turn-helix domain SH03_RS04065 PF09335 SNARE associated Golgi protein SH03_RS04070 PF00005 ABC transporter SH03_RS04075 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS04085 PF12793 Sugar transport-related sRNA regulator N-term SH03_RS04085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH03_RS04095 PF07690 Major Facilitator Superfamily SH03_RS04100 PF00694 Aconitase C-terminal domain SH03_RS04105 PF00330 Aconitase family (aconitate hydratase) SH03_RS04110 PF00180 Isocitrate/isopropylmalate dehydrogenase SH03_RS04115 PF00682 HMGL-like SH03_RS04115 PF08502 LeuA allosteric (dimerisation) domain SH03_RS04120 PF08054 Leucine operon leader peptide SH03_RS04125 PF03466 LysR substrate binding domain SH03_RS04125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS04130 PF00205 Thiamine pyrophosphate enzyme, central domain SH03_RS04130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH03_RS04130 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH03_RS04135 PF10369 Small subunit of acetolactate synthase SH03_RS04145 PF00356 Bacterial regulatory proteins, lacI family SH03_RS04145 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH03_RS04150 PF02381 MraZ protein, putative antitoxin-like SH03_RS04155 PF01795 MraW methylase family SH03_RS04160 PF04999 Cell division protein FtsL SH03_RS04165 PF03717 Penicillin-binding Protein dimerisation domain SH03_RS04165 PF00905 Penicillin binding protein transpeptidase domain SH03_RS04170 PF01225 Mur ligase family, catalytic domain SH03_RS04170 PF02875 Mur ligase family, glutamate ligase domain SH03_RS04170 PF08245 Mur ligase middle domain SH03_RS04175 PF02875 Mur ligase family, glutamate ligase domain SH03_RS04175 PF01225 Mur ligase family, catalytic domain SH03_RS04175 PF08245 Mur ligase middle domain SH03_RS04180 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SH03_RS04180 PF00953 Glycosyl transferase family 4 SH03_RS04185 PF08245 Mur ligase middle domain SH03_RS04185 PF02875 Mur ligase family, glutamate ligase domain SH03_RS04190 PF01098 Cell cycle protein SH03_RS04195 PF03033 Glycosyltransferase family 28 N-terminal domain SH03_RS04195 PF04101 Glycosyltransferase family 28 C-terminal domain SH03_RS04200 PF01225 Mur ligase family, catalytic domain SH03_RS04200 PF08245 Mur ligase middle domain SH03_RS04200 PF02875 Mur ligase family, glutamate ligase domain SH03_RS04205 PF01820 D-ala D-ala ligase N-terminus SH03_RS04205 PF07478 D-ala D-ala ligase C-terminus SH03_RS04210 PF08478 POTRA domain, FtsQ-type SH03_RS04210 PF03799 Cell division protein FtsQ SH03_RS04215 PF02491 SHS2 domain inserted in FTSA SH03_RS04220 PF00091 Tubulin/FtsZ family, GTPase domain SH03_RS04220 PF12327 FtsZ family, C-terminal domain SH03_RS04225 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SH03_RS04230 PF06558 Secretion monitor precursor protein (SecM) SH03_RS04235 PF07516 SecA Wing and Scaffold domain SH03_RS04235 PF02810 SEC-C motif SH03_RS04235 PF07517 SecA DEAD-like domain SH03_RS04235 PF01043 SecA preprotein cross-linking domain SH03_RS04240 PF00293 NUDIX domain SH03_RS04250 PF03884 DNA gyrase inhibitor YacG SH03_RS04255 PF07072 Cell division protein SH03_RS04260 PF01121 Dephospho-CoA kinase SH03_RS04265 PF00478 IMP dehydrogenase / GMP reductase domain SH03_RS04270 PF00482 Type II secretion system (T2SS), protein F SH03_RS04275 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SH03_RS04275 PF00437 Type II/IV secretion system protein SH03_RS04280 PF07963 Prokaryotic N-terminal methylation motif SH03_RS04290 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SH03_RS04290 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SH03_RS04295 PF01510 N-acetylmuramoyl-L-alanine amidase SH03_RS04300 PF17113 Regulatory signalling modulator protein AmpE SH03_RS04305 PF00324 Amino acid permease SH03_RS04310 PF00392 Bacterial regulatory proteins, gntR family SH03_RS04310 PF07729 FCD domain SH03_RS04315 PF00456 Transketolase, thiamine diphosphate binding domain SH03_RS04315 PF17831 Pyruvate dehydrogenase E1 component middle domain SH03_RS04320 PF02817 e3 binding domain SH03_RS04320 PF00364 Biotin-requiring enzyme SH03_RS04320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH03_RS04325 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH03_RS04325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH03_RS04330 PF11737 Protein of unknown function (DUF3300) SH03_RS04335 PF11791 Aconitate B N-terminal domain SH03_RS04335 PF06434 Aconitate hydratase 2 N-terminus SH03_RS04335 PF00330 Aconitase family (aconitate hydratase) SH03_RS04340 PF06062 Uncharacterised protein family (UPF0231) SH03_RS04345 PF02675 S-adenosylmethionine decarboxylase SH03_RS04350 PF17284 Spermidine synthase tetramerisation domain SH03_RS04355 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) SH03_RS04360 PF07731 Multicopper oxidase SH03_RS04360 PF07732 Multicopper oxidase SH03_RS04360 PF00394 Multicopper oxidase SH03_RS04365 PF01011 PQQ enzyme repeat SH03_RS04370 PF00156 Phosphoribosyl transferase domain SH03_RS04375 PF00484 Carbonic anhydrase SH03_RS04380 PF00005 ABC transporter SH03_RS04385 PF01061 ABC-2 type transporter SH03_RS04390 PF03610 PTS system fructose IIA component SH03_RS04395 PF01522 Polysaccharide deacetylase SH03_RS04400 PF02261 Aspartate decarboxylase SH03_RS04405 PF04754 Putative transposase, YhgA-like SH03_RS04410 PF02569 Pantoate-beta-alanine ligase SH03_RS04415 PF02548 Ketopantoate hydroxymethyltransferase SH03_RS04420 PF00419 Fimbrial protein SH03_RS04425 PF00419 Fimbrial protein SH03_RS04430 PF00419 Fimbrial protein SH03_RS04435 PF00419 Fimbrial protein SH03_RS04440 PF13953 PapC C-terminal domain SH03_RS04440 PF00577 Outer membrane usher protein SH03_RS04440 PF13954 PapC N-terminal domain SH03_RS04445 PF02753 Pili assembly chaperone PapD, C-terminal domain SH03_RS04445 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH03_RS04450 PF00419 Fimbrial protein SH03_RS04455 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SH03_RS04460 PF01743 Poly A polymerase head domain SH03_RS04460 PF12626 Polymerase A arginine-rich C-terminus SH03_RS04460 PF12627 Probable RNA and SrmB- binding site of polymerase A SH03_RS04465 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH03_RS04470 PF01258 Prokaryotic dksA/traR C4-type zinc finger SH03_RS04475 PF03749 Sugar fermentation stimulation protein RE domain SH03_RS04475 PF17746 SfsA N-terminal OB domain SH03_RS04480 PF02834 LigT like Phosphoesterase SH03_RS04485 PF04408 Helicase associated domain (HA2) SH03_RS04485 PF08482 ATP-dependent helicase C-terminal SH03_RS04485 PF00270 DEAD/DEAH box helicase SH03_RS04485 PF00271 Helicase conserved C-terminal domain SH03_RS04495 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal SH03_RS04495 PF00912 Transglycosylase SH03_RS04495 PF14814 Bifunctional transglycosylase second domain SH03_RS04495 PF00905 Penicillin binding protein transpeptidase domain SH03_RS04500 PF00593 TonB dependent receptor SH03_RS04500 PF07715 TonB-dependent Receptor Plug Domain SH03_RS04505 PF00005 ABC transporter SH03_RS04510 PF01497 Periplasmic binding protein SH03_RS04515 PF01032 FecCD transport family SH03_RS04520 PF00202 Aminotransferase class-III SH03_RS04525 PF00654 Voltage gated chloride channel SH03_RS04530 PF01521 Iron-sulphur cluster biosynthesis SH03_RS04535 PF03458 UPF0126 domain SH03_RS04540 PF01497 Periplasmic binding protein SH03_RS04545 PF01048 Phosphorylase superfamily SH03_RS04550 PF01966 HD domain SH03_RS04550 PF13286 Phosphohydrolase-associated domain SH03_RS04555 PF00595 PDZ domain SH03_RS04560 PF05651 Putative sugar diacid recognition SH03_RS04560 PF17853 GGDEF-like domain SH03_RS04560 PF13556 PucR C-terminal helix-turn-helix domain SH03_RS04565 PF11944 Protein of unknown function (DUF3461) SH03_RS04570 PF00149 Calcineurin-like phosphoesterase SH03_RS04575 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal SH03_RS04575 PF14602 Hexapeptide repeat of succinyl-transferase SH03_RS04575 PF00132 Bacterial transferase hexapeptide (six repeats) SH03_RS04580 PF08335 GlnD PII-uridylyltransferase SH03_RS04580 PF01966 HD domain SH03_RS04580 PF01909 Nucleotidyltransferase domain SH03_RS04580 PF01842 ACT domain SH03_RS04585 PF00557 Metallopeptidase family M24 SH03_RS04590 PF00318 Ribosomal protein S2 SH03_RS04595 PF00889 Elongation factor TS SH03_RS04600 PF00696 Amino acid kinase family SH03_RS04605 PF01765 Ribosome recycling factor SH03_RS04610 PF13288 DXP reductoisomerase C-terminal domain SH03_RS04610 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SH03_RS04610 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SH03_RS04615 PF01255 Putative undecaprenyl diphosphate synthase SH03_RS04625 PF17820 PDZ domain SH03_RS04625 PF02163 Peptidase family M50 SH03_RS04630 PF01103 Surface antigen SH03_RS04630 PF07244 Surface antigen variable number repeat SH03_RS04635 PF03938 Outer membrane protein (OmpH-like) SH03_RS04640 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SH03_RS04640 PF00132 Bacterial transferase hexapeptide (six repeats) SH03_RS04645 PF07977 FabA-like domain SH03_RS04650 PF00132 Bacterial transferase hexapeptide (six repeats) SH03_RS04650 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SH03_RS04655 PF02684 Lipid-A-disaccharide synthetase SH03_RS04660 PF01351 Ribonuclease HII SH03_RS04665 PF01336 OB-fold nucleic acid binding domain SH03_RS04665 PF07733 Bacterial DNA polymerase III alpha NTPase domain SH03_RS04665 PF14579 Helix-hairpin-helix motif SH03_RS04665 PF02811 PHP domain SH03_RS04665 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SH03_RS04670 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SH03_RS04675 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH03_RS04675 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH03_RS04675 PF01276 Orn/Lys/Arg decarboxylase, major domain SH03_RS04680 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH03_RS04685 PF11734 TilS substrate C-terminal domain SH03_RS04685 PF09179 TilS substrate binding domain SH03_RS04685 PF01171 PP-loop family SH03_RS04690 PF07073 Modulator of Rho-dependent transcription termination (ROF) SH03_RS04695 PF06786 Uncharacterised protein family (UPF0253) SH03_RS04700 PF07152 YaeQ protein SH03_RS04705 PF00472 RF-1 domain SH03_RS04710 PF04170 NlpE N-terminal domain SH03_RS04710 PF17185 NlpE C-terminal OB domain SH03_RS04715 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH03_RS04720 PF04073 Aminoacyl-tRNA editing domain SH03_RS04720 PF03129 Anticodon binding domain SH03_RS04720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH03_RS04725 PF18389 TrmO C-terminal domain SH03_RS04725 PF01980 tRNA-methyltransferase O SH03_RS04730 PF16358 RcsF lipoprotein SH03_RS04735 PF03180 NLPA lipoprotein SH03_RS04740 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS04745 PF09383 NIL domain SH03_RS04745 PF00005 ABC transporter SH03_RS04785 PF00248 Aldo/keto reductase family SH03_RS04790 PF03466 LysR substrate binding domain SH03_RS04790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS04795 PF03372 Endonuclease/Exonuclease/phosphatase family SH03_RS04800 PF08241 Methyltransferase domain SH03_RS04805 PF01476 LysM domain SH03_RS04805 PF01464 Transglycosylase SLT domain SH03_RS04810 PF00753 Metallo-beta-lactamase superfamily SH03_RS04810 PF16123 Hydroxyacylglutathione hydrolase C-terminus SH03_RS04815 PF08241 Methyltransferase domain SH03_RS04820 PF00075 RNase H SH03_RS04825 PF00929 Exonuclease SH03_RS04850 PF01609 Transposase DDE domain SH03_RS04850 PF13808 DDE_Tnp_1-associated SH03_RS04855 PF00795 Carbon-nitrogen hydrolase SH03_RS04865 PF09317 Domain of unknown function (DUF1974) SH03_RS04865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH03_RS04865 PF02770 Acyl-CoA dehydrogenase, middle domain SH03_RS04865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH03_RS04870 PF13580 SIS domain SH03_RS04875 PF13230 Glutamine amidotransferases class-II SH03_RS04880 PF03734 L,D-transpeptidase catalytic domain SH03_RS04885 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ SH03_RS04890 PF04221 RelB antitoxin SH03_RS04895 PF00877 NlpC/P60 family SH03_RS04905 PF00771 FHIPEP family SH03_RS04910 PF13677 Membrane MotB of proton-channel complex MotA/MotB SH03_RS04910 PF00691 OmpA family SH03_RS04915 PF11799 impB/mucB/samB family C-terminal domain SH03_RS04915 PF11798 IMS family HHH motif SH03_RS04915 PF00817 impB/mucB/samB family SH03_RS04925 PF13957 Toxin YafO, type II toxin-antitoxin system SH03_RS04930 PF13673 Acetyltransferase (GNAT) domain SH03_RS04940 PF00472 RF-1 domain SH03_RS04945 PF01546 Peptidase family M20/M25/M40 SH03_RS04945 PF07687 Peptidase dimerisation domain SH03_RS04950 PF00156 Phosphoribosyl transferase domain SH03_RS04955 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) SH03_RS04960 PF07417 Sigma factor-binding transcriptional regulator Crl SH03_RS04965 PF00267 Gram-negative porin SH03_RS04970 PF00696 Amino acid kinase family SH03_RS04970 PF01472 PUA domain SH03_RS04975 PF00171 Aldehyde dehydrogenase family SH03_RS04985 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH03_RS04990 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH03_RS04995 PF04002 RadC-like JAB domain SH03_RS05000 PF03230 Antirestriction protein SH03_RS05005 PF06006 Bacterial protein of unknown function (DUF905) SH03_RS05025 PF06067 Domain of unknown function (DUF932) SH03_RS05030 PF01926 50S ribosome-binding GTPase SH03_RS05035 PF03466 LysR substrate binding domain SH03_RS05035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS05040 PF01527 Transposase SH03_RS05045 PF13936 Helix-turn-helix domain SH03_RS05045 PF00665 Integrase core domain SH03_RS05065 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SH03_RS05070 PF01609 Transposase DDE domain SH03_RS05070 PF05598 Transposase domain (DUF772) SH03_RS05075 PF00324 Amino acid permease SH03_RS05080 PF02574 Homocysteine S-methyltransferase SH03_RS05085 PF08402 TOBE domain SH03_RS05085 PF00005 ABC transporter SH03_RS05090 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS05095 PF03400 IS1 transposase SH03_RS05100 PF12759 InsA C-terminal domain SH03_RS05100 PF03811 InsA N-terminal domain SH03_RS05105 PF01527 Transposase SH03_RS05110 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH03_RS05115 PF00665 Integrase core domain SH03_RS05120 PF00701 Dihydrodipicolinate synthetase family SH03_RS05125 PF00920 Dehydratase family SH03_RS05135 PF04616 Glycosyl hydrolases family 43 SH03_RS05135 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain SH03_RS05140 PF09339 IclR helix-turn-helix domain SH03_RS05140 PF01614 Bacterial transcriptional regulator SH03_RS05145 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH03_RS05145 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH03_RS05150 PF03400 IS1 transposase SH03_RS05165 PF07638 ECF sigma factor SH03_RS05185 PF13356 Arm DNA-binding domain SH03_RS05185 PF00589 Phage integrase family SH03_RS05195 PF03466 LysR substrate binding domain SH03_RS05200 PF02625 XdhC and CoxI family SH03_RS05200 PF13478 XdhC Rossmann domain SH03_RS05205 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH03_RS05205 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH03_RS05210 PF03450 CO dehydrogenase flavoprotein C-terminal domain SH03_RS05210 PF00941 FAD binding domain in molybdopterin dehydrogenase SH03_RS05215 PF00111 2Fe-2S iron-sulfur cluster binding domain SH03_RS05215 PF01799 [2Fe-2S] binding domain SH03_RS05220 PF07274 Protein of unknown function (DUF1440) SH03_RS05225 PF03692 Putative zinc- or iron-chelating domain SH03_RS05240 PF16967 E-set like domain SH03_RS05240 PF15976 CS1-pili formation C-terminal SH03_RS05245 PF18649 EcpB C-terminal domain SH03_RS05250 PF16449 Fimbrillin MatB SH03_RS05255 PF00196 Bacterial regulatory proteins, luxR family SH03_RS05265 PF00444 Ribosomal protein L36 SH03_RS05270 PF01197 Ribosomal protein L31 SH03_RS05280 PF11924 Inverse autotransporter, beta-domain SH03_RS05285 PF01527 Transposase SH03_RS05290 PF00665 Integrase core domain SH03_RS05290 PF13333 Integrase core domain SH03_RS05290 PF13276 HTH-like domain SH03_RS05295 PF12833 Helix-turn-helix domain SH03_RS05300 PF04224 Protein of unknown function, DUF417 SH03_RS05305 PF07338 Protein of unknown function (DUF1471) SH03_RS05310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH03_RS05310 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH03_RS05315 PF12833 Helix-turn-helix domain SH03_RS05315 PF12852 Cupin SH03_RS05320 PF02754 Cysteine-rich domain SH03_RS05325 PF02589 LUD domain SH03_RS05325 PF13183 4Fe-4S dicluster domain SH03_RS05325 PF11870 Domain of unknown function (DUF3390) SH03_RS05330 PF02589 LUD domain SH03_RS05345 PF05199 GMC oxidoreductase SH03_RS05345 PF00732 GMC oxidoreductase SH03_RS05350 PF00171 Aldehyde dehydrogenase family SH03_RS05355 PF00440 Bacterial regulatory proteins, tetR family SH03_RS05355 PF13977 BetI-type transcriptional repressor, C-terminal SH03_RS05360 PF02028 BCCT, betaine/carnitine/choline family transporter SH03_RS05370 PF00196 Bacterial regulatory proteins, luxR family SH03_RS05370 PF00563 EAL domain SH03_RS05375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS05375 PF03466 LysR substrate binding domain SH03_RS05380 PF06496 Protein of unknown function (DUF1097) SH03_RS05385 PF12796 Ankyrin repeats (3 copies) SH03_RS05390 PF11392 Protein of unknown function (DUF2877) SH03_RS05395 PF02629 CoA binding domain SH03_RS05395 PF00549 CoA-ligase SH03_RS05400 PF06545 Protein of unknown function (DUF1116) SH03_RS05410 PF00696 Amino acid kinase family SH03_RS05415 PF07969 Amidohydrolase family SH03_RS05420 PF00107 Zinc-binding dehydrogenase SH03_RS05420 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS05435 PF01810 LysE type translocator SH03_RS05440 PF07338 Protein of unknown function (DUF1471) SH03_RS05445 PF02954 Bacterial regulatory protein, Fis family SH03_RS05445 PF00158 Sigma-54 interaction domain SH03_RS05445 PF06506 Propionate catabolism activator SH03_RS05455 PF00285 Citrate synthase, C-terminal domain SH03_RS05465 PF00501 AMP-binding enzyme SH03_RS05465 PF13193 AMP-binding enzyme C-terminal domain SH03_RS05465 PF16177 Acetyl-coenzyme A synthetase N-terminus SH03_RS05470 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin SH03_RS05475 PF07969 Amidohydrolase family SH03_RS05480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS05480 PF03466 LysR substrate binding domain SH03_RS05485 PF00484 Carbonic anhydrase SH03_RS05490 PF02560 Cyanate lyase C-terminal domain SH03_RS05495 PF07690 Major Facilitator Superfamily SH03_RS05500 PF00132 Bacterial transferase hexapeptide (six repeats) SH03_RS05500 PF12464 Maltose acetyltransferase SH03_RS05505 PF01306 LacY proton/sugar symporter SH03_RS05510 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH03_RS05510 PF02929 Beta galactosidase small chain SH03_RS05510 PF16353 Domain of unknown function(DUF4981) SH03_RS05510 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH03_RS05510 PF00703 Glycosyl hydrolases family 2 SH03_RS05515 PF00356 Bacterial regulatory proteins, lacI family SH03_RS05520 PF09339 IclR helix-turn-helix domain SH03_RS05520 PF01614 Bacterial transcriptional regulator SH03_RS05525 PF01494 FAD binding domain SH03_RS05530 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SH03_RS05535 PF12697 Alpha/beta hydrolase family SH03_RS05540 PF01557 Fumarylacetoacetate (FAA) hydrolase family SH03_RS05545 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation SH03_RS05545 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH03_RS05550 PF07836 DmpG-like communication domain SH03_RS05550 PF00682 HMGL-like SH03_RS05555 PF07690 Major Facilitator Superfamily SH03_RS05560 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) SH03_RS05565 PF00756 Putative esterase SH03_RS05570 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS05570 PF00107 Zinc-binding dehydrogenase SH03_RS05575 PF02583 Metal-sensitive transcriptional repressor SH03_RS05585 PF00132 Bacterial transferase hexapeptide (six repeats) SH03_RS05590 PF01527 Transposase SH03_RS05595 PF00665 Integrase core domain SH03_RS05595 PF13276 HTH-like domain SH03_RS05600 PF00535 Glycosyl transferase family 2 SH03_RS05605 PF02585 GlcNAc-PI de-N-acetylase SH03_RS05610 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH03_RS05615 PF00005 ABC transporter SH03_RS05620 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS05625 PF02668 Taurine catabolism dioxygenase TauD, TfdA family SH03_RS05630 PF00490 Delta-aminolevulinic acid dehydratase SH03_RS05645 PF13276 HTH-like domain SH03_RS05645 PF00665 Integrase core domain SH03_RS05645 PF13333 Integrase core domain SH03_RS05650 PF01527 Transposase SH03_RS05655 PF03212 Pertactin SH03_RS05655 PF03797 Autotransporter beta-domain SH03_RS05660 PF15977 Winged helix-turn-helix DNA binding SH03_RS05665 PF00144 Beta-lactamase SH03_RS05675 PF05992 SbmA/BacA-like family SH03_RS05680 PF07759 Protein of unknown function (DUF1615) SH03_RS05685 PF10954 Protein of unknown function (DUF2755) SH03_RS05690 PF10953 Protein of unknown function (DUF2754) SH03_RS05695 PF01820 D-ala D-ala ligase N-terminus SH03_RS05695 PF07478 D-ala D-ala ligase C-terminus SH03_RS05705 PF10796 Sigma-S stabilisation anti-adaptor protein SH03_RS05710 PF00245 Alkaline phosphatase SH03_RS05715 PF07769 psiF repeat SH03_RS05720 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS05720 PF05230 MASE2 domain SH03_RS05725 PF03807 NADP oxidoreductase coenzyme F420-dependent SH03_RS05725 PF14748 Pyrroline-5-carboxylate reductase dimerisation SH03_RS05730 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SH03_RS05735 PF01202 Shikimate kinase SH03_RS05740 PF16362 YaiA protein SH03_RS05750 PF07302 AroM protein SH03_RS05755 PF06865 Pyrimidine/purine nucleoside phosphorylase SH03_RS05760 PF10971 Protein of unknown function (DUF2773) SH03_RS05765 PF04381 Putative exonuclease, RdgC SH03_RS05770 PF00480 ROK family SH03_RS05775 PF07690 Major Facilitator Superfamily SH03_RS05780 PF13476 AAA domain SH03_RS05785 PF12320 Type 5 capsule protein repressor C-terminal domain SH03_RS05785 PF00149 Calcineurin-like phosphoesterase SH03_RS05790 PF00486 Transcriptional regulatory protein, C terminal SH03_RS05790 PF00072 Response regulator receiver domain SH03_RS05795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS05795 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS05795 PF00989 PAS fold SH03_RS05795 PF11808 Phosphate regulon sensor protein PhoR SH03_RS05800 PF05525 Branched-chain amino acid transport protein SH03_RS05805 PF00324 Amino acid permease SH03_RS05810 PF00128 Alpha amylase, catalytic domain SH03_RS05810 PF02903 Alpha amylase, N-terminal ig-like domain SH03_RS05815 PF04336 Acyl carrier protein phosphodiesterase SH03_RS05820 PF02547 Queuosine biosynthesis protein SH03_RS05825 PF01702 Queuine tRNA-ribosyltransferase SH03_RS05830 PF02699 Preprotein translocase subunit SH03_RS05835 PF07549 SecD/SecF GG Motif SH03_RS05835 PF13721 SecD export protein N-terminal TM region SH03_RS05835 PF02355 Protein export membrane protein SH03_RS05840 PF02355 Protein export membrane protein SH03_RS05840 PF07549 SecD/SecF GG Motif SH03_RS05845 PF01844 HNH endonuclease SH03_RS05855 PF03502 Nucleoside-specific channel-forming protein, Tsx SH03_RS05860 PF11622 Protein of unknown function (DUF3251) SH03_RS05865 PF03477 ATP cone domain SH03_RS05870 PF01872 RibD C-terminal domain SH03_RS05870 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SH03_RS05875 PF00885 6,7-dimethyl-8-ribityllumazine synthase SH03_RS05880 PF01029 NusB family SH03_RS05885 PF00586 AIR synthase related protein, N-terminal domain SH03_RS05885 PF02769 AIR synthase related protein, C-terminal domain SH03_RS05890 PF04608 Phosphatidylglycerophosphatase A SH03_RS05895 PF00248 Aldo/keto reductase family SH03_RS05900 PF02780 Transketolase, C-terminal domain SH03_RS05900 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SH03_RS05900 PF02779 Transketolase, pyrimidine binding domain SH03_RS05905 PF00348 Polyprenyl synthetase SH03_RS05910 PF02609 Exonuclease VII small subunit SH03_RS05915 PF02568 Thiamine biosynthesis protein (ThiI) SH03_RS05915 PF02926 THUMP domain SH03_RS05920 PF01965 DJ-1/PfpI family SH03_RS05925 PF08546 Ketopantoate reductase PanE/ApbA C terminal SH03_RS05925 PF02558 Ketopantoate reductase PanE/ApbA SH03_RS05930 PF04461 Protein of unknown function (DUF520) SH03_RS05935 PF07690 Major Facilitator Superfamily SH03_RS05940 PF01040 UbiA prenyltransferase family SH03_RS05945 PF03626 Prokaryotic Cytochrome C oxidase subunit IV SH03_RS05950 PF00510 Cytochrome c oxidase subunit III SH03_RS05955 PF00115 Cytochrome C and Quinol oxidase polypeptide I SH03_RS05960 PF06481 COX Aromatic Rich Motif SH03_RS05960 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SH03_RS05965 PF07690 Major Facilitator Superfamily SH03_RS05970 PF03923 Uncharacterized lipoprotein SH03_RS05970 PF08139 Prokaryotic membrane lipoprotein lipid attachment site SH03_RS05975 PF01722 BolA-like protein SH03_RS05985 PF05698 Bacterial trigger factor protein (TF) C-terminus SH03_RS05985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH03_RS05985 PF05697 Bacterial trigger factor protein (TF) SH03_RS05990 PF00574 Clp protease SH03_RS05995 PF10431 C-terminal, D2-small domain, of ClpB protein SH03_RS05995 PF06689 ClpX C4-type zinc finger SH03_RS05995 PF07724 AAA domain (Cdc48 subfamily) SH03_RS06000 PF02190 ATP-dependent protease La (LON) substrate-binding domain SH03_RS06000 PF00004 ATPase family associated with various cellular activities (AAA) SH03_RS06000 PF05362 Lon protease (S16) C-terminal proteolytic domain SH03_RS06005 PF00216 Bacterial DNA-binding protein SH03_RS06010 PF13145 PPIC-type PPIASE domain SH03_RS06025 PF06508 Queuosine biosynthesis protein QueC SH03_RS06030 PF12793 Sugar transport-related sRNA regulator N-term SH03_RS06030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH03_RS06040 PF01037 Lrp/AsnC ligand binding domain SH03_RS06040 PF13404 AsnC-type helix-turn-helix domain SH03_RS06045 PF00005 ABC transporter SH03_RS06045 PF00664 ABC transporter transmembrane region SH03_RS06050 PF00664 ABC transporter transmembrane region SH03_RS06050 PF00005 ABC transporter SH03_RS06055 PF00543 Nitrogen regulatory protein P-II SH03_RS06060 PF00909 Ammonium Transporter Family SH03_RS06070 PF09619 Type III secretion system lipoprotein chaperone (YscW) SH03_RS06075 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH03_RS06080 PF07237 Protein of unknown function (DUF1428) SH03_RS06085 PF12792 CSS motif domain associated with EAL SH03_RS06085 PF00563 EAL domain SH03_RS06090 PF10777 Inner membrane protein YlaC SH03_RS06095 PF14602 Hexapeptide repeat of succinyl-transferase SH03_RS06095 PF12464 Maltose acetyltransferase SH03_RS06100 PF05321 Haemolysin expression modulating protein SH03_RS06105 PF10757 Biofilm formation regulator YbaJ SH03_RS06110 PF00873 AcrB/AcrD/AcrF family SH03_RS06115 PF00529 HlyD membrane-fusion protein of T1SS SH03_RS06115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH03_RS06120 PF00440 Bacterial regulatory proteins, tetR family SH03_RS06120 PF08361 MAATS-type transcriptional repressor, C-terminal region SH03_RS06125 PF12794 Mechanosensitive ion channel inner membrane domain 1 SH03_RS06125 PF00924 Mechanosensitive ion channel SH03_RS06125 PF12795 Mechanosensitive ion channel porin domain SH03_RS06135 PF10689 Protein of unknown function (DUF2496) SH03_RS06140 PF07445 Primosomal replication protein priC SH03_RS06145 PF04304 Protein of unknown function (DUF454) SH03_RS06150 PF00156 Phosphoribosyl transferase domain SH03_RS06155 PF12169 DNA polymerase III subunits gamma and tau domain III SH03_RS06155 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding SH03_RS06155 PF12170 DNA polymerase III tau subunit V interacting with alpha SH03_RS06160 PF02575 YbaB/EbfC DNA-binding family SH03_RS06165 PF02132 RecR protein SH03_RS06165 PF13662 Toprim domain SH03_RS06170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS06170 PF00183 Hsp90 protein SH03_RS06175 PF05191 Adenylate kinase, active site lid SH03_RS06180 PF00762 Ferrochelatase SH03_RS06185 PF07859 alpha/beta hydrolase fold SH03_RS06190 PF00294 pfkB family carbohydrate kinase SH03_RS06195 PF00999 Sodium/hydrogen exchanger family SH03_RS06195 PF02254 TrkA-N domain SH03_RS06200 PF07690 Major Facilitator Superfamily SH03_RS06205 PF00149 Calcineurin-like phosphoesterase SH03_RS06205 PF02872 5'-nucleotidase, C-terminal domain SH03_RS06210 PF04073 Aminoacyl-tRNA editing domain SH03_RS06215 PF01963 TraB family SH03_RS06220 PF01381 Helix-turn-helix SH03_RS06225 PF00403 Heavy-metal-associated domain SH03_RS06230 PF04960 Glutaminase SH03_RS06235 PF13520 Amino acid permease SH03_RS06240 PF13411 MerR HTH family regulatory protein SH03_RS06245 PF01957 NfeD-like C-terminal, partner-binding SH03_RS06250 PF01145 SPFH domain / Band 7 family SH03_RS06250 PF16200 C-terminal region of band_7 SH03_RS06255 PF00005 ABC transporter SH03_RS06260 PF03649 Uncharacterised protein family (UPF0014) SH03_RS06265 PF00085 Thioredoxin SH03_RS06270 PF00106 short chain dehydrogenase SH03_RS06275 PF13472 GDSL-like Lipase/Acylhydrolase family SH03_RS06280 PF00005 ABC transporter SH03_RS06290 PF05593 RHS Repeat SH03_RS06290 PF03527 RHS protein SH03_RS06290 PF14220 Domain of unknown function (DUF4329) SH03_RS06295 PF15631 NTF2 fold immunity protein SH03_RS06300 PF03527 RHS protein SH03_RS06320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS06320 PF03466 LysR substrate binding domain SH03_RS06325 PF04115 Ureidoglycolate lyase SH03_RS06330 PF09339 IclR helix-turn-helix domain SH03_RS06330 PF01614 Bacterial transcriptional regulator SH03_RS06335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH03_RS06335 PF00205 Thiamine pyrophosphate enzyme, central domain SH03_RS06335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH03_RS06340 PF01261 Xylose isomerase-like TIM barrel SH03_RS06345 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH03_RS06345 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH03_RS06350 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin SH03_RS06355 PF01979 Amidohydrolase family SH03_RS06360 PF00860 Permease family SH03_RS06365 PF02595 Glycerate kinase family SH03_RS06370 PF05899 Protein of unknown function (DUF861) SH03_RS06370 PF07883 Cupin domain SH03_RS06375 PF01546 Peptidase family M20/M25/M40 SH03_RS06380 PF02615 Malate/L-lactate dehydrogenase SH03_RS06385 PF02629 CoA binding domain SH03_RS06385 PF00549 CoA-ligase SH03_RS06390 PF06545 Protein of unknown function (DUF1116) SH03_RS06395 PF11392 Protein of unknown function (DUF2877) SH03_RS06400 PF00696 Amino acid kinase family SH03_RS06405 PF02222 ATP-grasp domain SH03_RS06405 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SH03_RS06410 PF00731 AIR carboxylase SH03_RS06415 PF12850 Calcineurin-like phosphoesterase superfamily domain SH03_RS06420 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SH03_RS06425 PF01406 tRNA synthetases class I (C) catalytic domain SH03_RS06425 PF09190 DALR domain SH03_RS06430 PF04307 LexA-binding, inner membrane-associated putative hydrolase SH03_RS06440 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SH03_RS06440 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SH03_RS06445 PF00419 Fimbrial protein SH03_RS06450 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH03_RS06450 PF02753 Pili assembly chaperone PapD, C-terminal domain SH03_RS06455 PF00577 Outer membrane usher protein SH03_RS06455 PF13954 PapC N-terminal domain SH03_RS06455 PF13953 PapC C-terminal domain SH03_RS06460 PF00419 Fimbrial protein SH03_RS06465 PF00419 Fimbrial protein SH03_RS06470 PF00196 Bacterial regulatory proteins, luxR family SH03_RS06470 PF00072 Response regulator receiver domain SH03_RS06480 PF00589 Phage integrase family SH03_RS06490 PF06992 Replication protein P SH03_RS06500 PF01527 Transposase SH03_RS06505 PF13333 Integrase core domain SH03_RS06505 PF13276 HTH-like domain SH03_RS06505 PF00665 Integrase core domain SH03_RS06515 PF00893 Small Multidrug Resistance protein SH03_RS06525 PF13408 Recombinase zinc beta ribbon domain SH03_RS06525 PF00239 Resolvase, N terminal domain SH03_RS06525 PF07508 Recombinase SH03_RS06530 PF01161 Phosphatidylethanolamine-binding protein SH03_RS06535 PF12833 Helix-turn-helix domain SH03_RS06550 PF07102 Protein of unknown function (DUF1364) SH03_RS06555 PF05866 Endodeoxyribonuclease RusA SH03_RS06565 PF06530 Phage antitermination protein Q SH03_RS06575 PF05598 Transposase domain (DUF772) SH03_RS06575 PF01609 Transposase DDE domain SH03_RS06580 PF00267 Gram-negative porin SH03_RS06585 PF04971 Bacteriophage P21 holin S SH03_RS06590 PF00959 Phage lysozyme SH03_RS06595 PF03245 Bacteriophage Rz lysis protein SH03_RS06600 PF06291 Bor protein SH03_RS06610 PF07166 Protein of unknown function (DUF1398) SH03_RS06620 PF13132 Domain of unknown function (DUF3950) SH03_RS06630 PF07471 Phage DNA packaging protein Nu1 SH03_RS06635 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH03_RS06640 PF08242 Methyltransferase domain SH03_RS06650 PF12833 Helix-turn-helix domain SH03_RS06655 PF01278 Omptin family SH03_RS06665 PF12833 Helix-turn-helix domain SH03_RS06670 PF14488 Domain of unknown function (DUF4434) SH03_RS06675 PF13283 Bacteriophage N adsorption protein A C-term SH03_RS06680 PF13632 Glycosyl transferase family group 2 SH03_RS06680 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SH03_RS06685 PF00672 HAMP domain SH03_RS06685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS06685 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS06690 PF00486 Transcriptional regulatory protein, C terminal SH03_RS06690 PF00072 Response regulator receiver domain SH03_RS06695 PF02321 Outer membrane efflux protein SH03_RS06700 PF11604 Copper binding periplasmic protein CusF SH03_RS06705 PF00529 HlyD membrane-fusion protein of T1SS SH03_RS06705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH03_RS06710 PF00873 AcrB/AcrD/AcrF family SH03_RS06715 PF00324 Amino acid permease SH03_RS06720 PF00924 Mechanosensitive ion channel SH03_RS06725 PF00881 Nitroreductase family SH03_RS06730 PF04237 YjbR SH03_RS06735 PF06643 Protein of unknown function (DUF1158) SH03_RS06740 PF04107 Glutamate-cysteine ligase family 2(GCS2) SH03_RS06750 PF01848 Hok/gef family SH03_RS06755 PF01609 Transposase DDE domain SH03_RS06760 PF01648 4'-phosphopantetheinyl transferase superfamily SH03_RS06760 PF17837 4'-phosphopantetheinyl transferase N-terminal domain SH03_RS06765 PF07715 TonB-dependent Receptor Plug Domain SH03_RS06765 PF00593 TonB dependent receptor SH03_RS06770 PF11806 Domain of unknown function (DUF3327) SH03_RS06770 PF00756 Putative esterase SH03_RS06775 PF03621 MbtH-like protein SH03_RS06780 PF13193 AMP-binding enzyme C-terminal domain SH03_RS06780 PF00668 Condensation domain SH03_RS06780 PF00550 Phosphopantetheine attachment site SH03_RS06780 PF00501 AMP-binding enzyme SH03_RS06780 PF00975 Thioesterase domain SH03_RS06785 PF02706 Chain length determinant protein SH03_RS06790 PF00005 ABC transporter SH03_RS06795 PF01032 FecCD transport family SH03_RS06800 PF01032 FecCD transport family SH03_RS06805 PF05977 Transmembrane secretion effector SH03_RS06810 PF01497 Periplasmic binding protein SH03_RS06815 PF00425 chorismate binding enzyme SH03_RS06820 PF00501 AMP-binding enzyme SH03_RS06820 PF13193 AMP-binding enzyme C-terminal domain SH03_RS06825 PF00550 Phosphopantetheine attachment site SH03_RS06825 PF00857 Isochorismatase family SH03_RS06835 PF03061 Thioesterase superfamily SH03_RS06840 PF13722 5TM C-terminal transporter carbon starvation CstA SH03_RS06840 PF02554 Carbon starvation protein CstA SH03_RS06845 PF04328 Selenoprotein, putative SH03_RS06850 PF00465 Iron-containing alcohol dehydrogenase SH03_RS06855 PF00155 Aminotransferase class I and II SH03_RS06860 PF02195 ParB-like nuclease domain SH03_RS06865 PF01507 Phosphoadenosine phosphosulfate reductase family SH03_RS06865 PF11922 Domain of unknown function (DUF3440) SH03_RS06870 PF03466 LysR substrate binding domain SH03_RS06870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS06875 PF13098 Thioredoxin-like domain SH03_RS06880 PF00578 AhpC/TSA family SH03_RS06880 PF10417 C-terminal domain of 1-Cys peroxiredoxin SH03_RS06885 PF13192 Thioredoxin domain SH03_RS06885 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH03_RS06890 PF00582 Universal stress protein family SH03_RS06895 PF13823 Alcohol dehydrogenase GroES-associated SH03_RS06895 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS06895 PF00107 Zinc-binding dehydrogenase SH03_RS06905 PF14760 Rnk N-terminus SH03_RS06905 PF01272 Transcription elongation factor, GreA/GreB, C-term SH03_RS06910 PF00445 Ribonuclease T2 family SH03_RS06915 PF00939 Sodium:sulfate symporter transmembrane region SH03_RS06920 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SH03_RS06925 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase SH03_RS06930 PF04223 Citrate lyase, alpha subunit (CitF) SH03_RS06935 PF03328 HpcH/HpaI aldolase/citrate lyase family SH03_RS06940 PF06857 Malonate decarboxylase delta subunit (MdcD) SH03_RS06945 PF08218 Citrate lyase ligase C-terminal domain SH03_RS06950 PF00989 PAS fold SH03_RS06950 PF17203 Single cache domain 3 SH03_RS06950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS06950 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SH03_RS06955 PF00072 Response regulator receiver domain SH03_RS06955 PF12431 Transcriptional regulator SH03_RS06960 PF03606 C4-dicarboxylate anaerobic carrier SH03_RS06965 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP SH03_RS06970 PF00313 'Cold-shock' DNA-binding domain SH03_RS06975 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SH03_RS06985 PF02416 mttA/Hcf106 family SH03_RS06990 PF04055 Radical SAM superfamily SH03_RS06990 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family SH03_RS06995 PF03466 LysR substrate binding domain SH03_RS06995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS07005 PF03099 Biotin/lipoate A/B protein ligase family SH03_RS07010 PF04359 Protein of unknown function (DUF493) SH03_RS07015 PF00768 D-alanyl-D-alanine carboxypeptidase SH03_RS07015 PF07943 Penicillin-binding protein 5, C-terminal domain SH03_RS07020 PF05036 Sporulation related domain SH03_RS07020 PF03330 Lytic transglycolase SH03_RS07025 PF01098 Cell cycle protein SH03_RS07030 PF00905 Penicillin binding protein transpeptidase domain SH03_RS07030 PF03717 Penicillin-binding Protein dimerisation domain SH03_RS07035 PF02590 Predicted SPOUT methyltransferase SH03_RS07045 PF00300 Histidine phosphatase superfamily (branch 1) SH03_RS07050 PF01467 Cytidylyltransferase-like SH03_RS07055 PF14840 Processivity clamp loader gamma complex DNA pol III C-term SH03_RS07055 PF06144 DNA polymerase III, delta subunit SH03_RS07060 PF04390 Lipopolysaccharide-assembly SH03_RS07065 PF08264 Anticodon-binding domain of tRNA SH03_RS07065 PF00133 tRNA synthetases class I (I, L, M and V) SH03_RS07065 PF13603 Leucyl-tRNA synthetase, Domain 2 SH03_RS07070 PF07295 Zinc-ribbon containing domain SH03_RS07075 PF08238 Sel1 repeat SH03_RS07080 PF06889 Protein of unknown function (DUF1266) SH03_RS07090 PF08238 Sel1 repeat SH03_RS07095 PF06889 Protein of unknown function (DUF1266) SH03_RS07105 PF00012 Hsp70 protein SH03_RS07110 PF01156 Inosine-uridine preferring nucleoside hydrolase SH03_RS07115 PF00005 ABC transporter SH03_RS07120 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS07125 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS07130 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH03_RS07135 PF05598 Transposase domain (DUF772) SH03_RS07135 PF01609 Transposase DDE domain SH03_RS07140 PF00795 Carbon-nitrogen hydrolase SH03_RS07145 PF00571 CBS domain SH03_RS07145 PF03471 Transporter associated domain SH03_RS07150 PF02130 Uncharacterized protein family UPF0054 SH03_RS07155 PF02562 PhoH-like protein SH03_RS07160 PF00919 Uncharacterized protein family UPF0004 SH03_RS07160 PF01938 TRAM domain SH03_RS07160 PF04055 Radical SAM superfamily SH03_RS07165 PF01494 FAD binding domain SH03_RS07205 PF00733 Asparagine synthase SH03_RS07205 PF13537 Glutamine amidotransferase domain SH03_RS07210 PF13344 Haloacid dehalogenase-like hydrolase SH03_RS07215 PF00480 ROK family SH03_RS07215 PF01047 MarR family SH03_RS07220 PF01979 Amidohydrolase family SH03_RS07225 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH03_RS07230 PF02378 Phosphotransferase system, EIIC SH03_RS07230 PF00367 phosphotransferase system, EIIB SH03_RS07230 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH03_RS07235 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH03_RS07235 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SH03_RS07240 PF03573 outer membrane porin, OprD family SH03_RS07245 PF13982 YbfN-like lipoprotein SH03_RS07250 PF01475 Ferric uptake regulator family SH03_RS07265 PF00258 Flavodoxin SH03_RS07270 PF01402 Ribbon-helix-helix protein, copG family SH03_RS07275 PF12697 Alpha/beta hydrolase family SH03_RS07280 PF03925 SeqA protein C-terminal domain SH03_RS07280 PF17206 SeqA protein N-terminal domain SH03_RS07285 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH03_RS07285 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH03_RS07285 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH03_RS07285 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH03_RS07305 PF13520 Amino acid permease SH03_RS07310 PF01276 Orn/Lys/Arg decarboxylase, major domain SH03_RS07310 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH03_RS07310 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH03_RS07320 PF00072 Response regulator receiver domain SH03_RS07320 PF00486 Transcriptional regulatory protein, C terminal SH03_RS07325 PF13492 GAF domain SH03_RS07325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS07325 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS07325 PF02702 Osmosensitive K+ channel His kinase sensor domain SH03_RS07325 PF13493 Domain of unknown function (DUF4118) SH03_RS07330 PF02669 K+-transporting ATPase, c chain SH03_RS07340 PF03814 Potassium-transporting ATPase A subunit SH03_RS07345 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) SH03_RS07350 PF10725 Protein of unknown function (DUF2517) SH03_RS07355 PF03527 RHS protein SH03_RS07355 PF05593 RHS Repeat SH03_RS07365 PF03527 RHS protein SH03_RS07365 PF05593 RHS Repeat SH03_RS07375 PF13808 DDE_Tnp_1-associated SH03_RS07380 PF13808 DDE_Tnp_1-associated SH03_RS07380 PF01609 Transposase DDE domain SH03_RS07385 PF13808 DDE_Tnp_1-associated SH03_RS07385 PF01609 Transposase DDE domain SH03_RS07390 PF08349 Protein of unknown function (DUF1722) SH03_RS07395 PF03441 FAD binding domain of DNA photolyase SH03_RS07395 PF00875 DNA photolyase SH03_RS07400 PF00854 POT family SH03_RS07405 PF01784 NIF3 (NGG1p interacting factor 3) SH03_RS07410 PF02682 Carboxyltransferase domain, subdomain C and D SH03_RS07415 PF02626 Carboxyltransferase domain, subdomain A and B SH03_RS07420 PF03746 LamB/YcsF family SH03_RS07425 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SH03_RS07425 PF06827 Zinc finger found in FPG and IleRS SH03_RS07425 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SH03_RS07430 PF05145 Transition state regulatory protein AbrB SH03_RS07435 PF00419 Fimbrial protein SH03_RS07440 PF02753 Pili assembly chaperone PapD, C-terminal domain SH03_RS07440 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH03_RS07445 PF13953 PapC C-terminal domain SH03_RS07445 PF13954 PapC N-terminal domain SH03_RS07445 PF00577 Outer membrane usher protein SH03_RS07450 PF00419 Fimbrial protein SH03_RS07455 PF00285 Citrate synthase, C-terminal domain SH03_RS07465 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SH03_RS07470 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SH03_RS07475 PF02910 Fumarate reductase flavoprotein C-term SH03_RS07475 PF00890 FAD binding domain SH03_RS07480 PF13085 2Fe-2S iron-sulfur cluster binding domain SH03_RS07490 PF02779 Transketolase, pyrimidine binding domain SH03_RS07490 PF16870 2-oxoglutarate dehydrogenase C-terminal SH03_RS07490 PF16078 2-oxoglutarate dehydrogenase N-terminus SH03_RS07490 PF00676 Dehydrogenase E1 component SH03_RS07495 PF00364 Biotin-requiring enzyme SH03_RS07495 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH03_RS07495 PF02817 e3 binding domain SH03_RS07500 PF08442 ATP-grasp domain SH03_RS07500 PF00549 CoA-ligase SH03_RS07505 PF00549 CoA-ligase SH03_RS07505 PF02629 CoA binding domain SH03_RS07510 PF07702 UTRA domain SH03_RS07510 PF00392 Bacterial regulatory proteins, gntR family SH03_RS07515 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH03_RS07515 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH03_RS07515 PF02378 Phosphotransferase system, EIIC SH03_RS07520 PF07748 Glycosyl hydrolases family 38 C-terminal domain SH03_RS07520 PF01074 Glycosyl hydrolases family 38 N-terminal domain SH03_RS07520 PF09261 Alpha mannosidase middle domain SH03_RS07530 PF01654 Cytochrome bd terminal oxidase subunit I SH03_RS07535 PF02322 Cytochrome bd terminal oxidase subunit II SH03_RS07540 PF08173 Membrane bound YbgT-like protein SH03_RS07545 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) SH03_RS07550 PF03061 Thioesterase superfamily SH03_RS07555 PF01618 MotA/TolQ/ExbB proton channel family SH03_RS07560 PF02472 Biopolymer transport protein ExbD/TolR SH03_RS07565 PF06519 TolA C-terminal SH03_RS07570 PF04052 TolB amino-terminal domain SH03_RS07570 PF07676 WD40-like Beta Propeller Repeat SH03_RS07575 PF00691 OmpA family SH03_RS07580 PF16331 TolA binding protein trimerisation SH03_RS07580 PF13174 Tetratricopeptide repeat SH03_RS07620 PF02445 Quinolinate synthetase A protein SH03_RS07625 PF04973 Nicotinamide mononucleotide transporter SH03_RS07630 PF01545 Cation efflux family SH03_RS07635 PF13985 YbgS-like protein SH03_RS07645 PF00793 DAHP synthetase I family SH03_RS07650 PF00300 Histidine phosphatase superfamily (branch 1) SH03_RS07655 PF01263 Aldose 1-epimerase SH03_RS07660 PF00288 GHMP kinases N terminal domain SH03_RS07660 PF08544 GHMP kinases C terminal SH03_RS07660 PF10509 Galactokinase galactose-binding signature SH03_RS07665 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SH03_RS07665 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SH03_RS07670 PF16363 GDP-mannose 4,6 dehydratase SH03_RS07675 PF00005 ABC transporter SH03_RS07680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS07680 PF03459 TOBE domain SH03_RS07685 PF10766 Multidrug efflux pump-associated protein AcrZ SH03_RS07695 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS07700 PF03459 TOBE domain SH03_RS07700 PF00005 ABC transporter SH03_RS07710 PF10282 Lactonase, 7-bladed beta-propeller SH03_RS07715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS07715 PF03466 LysR substrate binding domain SH03_RS07720 PF04303 PrpF protein SH03_RS07725 PF00939 Sodium:sulfate symporter transmembrane region SH03_RS07730 PF00330 Aconitase family (aconitate hydratase) SH03_RS07730 PF00694 Aconitase C-terminal domain SH03_RS07735 PF01095 Pectinesterase SH03_RS07740 PF01161 Phosphatidylethanolamine-binding protein SH03_RS07745 PF00202 Aminotransferase class-III SH03_RS07750 PF06968 Biotin and Thiamin Synthesis associated domain SH03_RS07750 PF04055 Radical SAM superfamily SH03_RS07755 PF00155 Aminotransferase class I and II SH03_RS07760 PF08241 Methyltransferase domain SH03_RS07770 PF02151 UvrB/uvrC motif SH03_RS07770 PF12344 Ultra-violet resistance protein B SH03_RS07770 PF17757 UvrB interaction domain SH03_RS07770 PF04851 Type III restriction enzyme, res subunit SH03_RS07770 PF00271 Helicase conserved C-terminal domain SH03_RS07775 PF01933 Uncharacterised protein family UPF0052 SH03_RS07785 PF04055 Radical SAM superfamily SH03_RS07785 PF06463 Molybdenum Cofactor Synthesis C SH03_RS07790 PF00994 Probable molybdopterin binding domain SH03_RS07795 PF01967 MoaC family SH03_RS07800 PF02597 ThiS family SH03_RS07805 PF02391 MoaE protein SH03_RS07810 PF01027 Inhibitor of apoptosis-promoting Bax1 SH03_RS07815 PF01027 Inhibitor of apoptosis-promoting Bax1 SH03_RS07820 PF03706 Lysylphosphatidylglycerol synthase TM region SH03_RS07825 PF13091 PLD-like domain SH03_RS07830 PF03372 Endonuclease/Exonuclease/phosphatase family SH03_RS07835 PF11076 Putative inner membrane protein YbhQ SH03_RS07850 PF00005 ABC transporter SH03_RS07855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH03_RS07860 PF09209 Tetracyclin repressor-like, C-terminal domain SH03_RS07860 PF00440 Bacterial regulatory proteins, tetR family SH03_RS07865 PF00270 DEAD/DEAH box helicase SH03_RS07865 PF00271 Helicase conserved C-terminal domain SH03_RS07870 PF08719 Domain of unknown function (DUF1768) SH03_RS07875 PF13307 Helicase C-terminal domain SH03_RS07875 PF06733 DEAD_2 SH03_RS07875 PF00270 DEAD/DEAH box helicase SH03_RS07880 PF02885 Glycosyl transferase family, helical bundle domain SH03_RS07885 PF02615 Malate/L-lactate dehydrogenase SH03_RS07890 PF07338 Protein of unknown function (DUF1471) SH03_RS07895 PF01258 Prokaryotic dksA/traR C4-type zinc finger SH03_RS07900 PF18331 PKHD-type hydroxylase C-terminal domain SH03_RS07900 PF13640 2OG-Fe(II) oxygenase superfamily SH03_RS07905 PF00593 TonB dependent receptor SH03_RS07905 PF07715 TonB-dependent Receptor Plug Domain SH03_RS07910 PF07338 Protein of unknown function (DUF1471) SH03_RS07915 PF05971 RNA methyltransferase SH03_RS07920 PF00924 Mechanosensitive ion channel SH03_RS07925 PF00005 ABC transporter SH03_RS07930 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS07935 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH03_RS07945 PF00210 Ferritin-like domain SH03_RS07950 PF00892 EamA-like transporter family SH03_RS07955 PF13505 Outer membrane protein beta-barrel domain SH03_RS07960 PF00884 Sulfatase SH03_RS07970 PF01325 Iron dependent repressor, N-terminal DNA binding domain SH03_RS07970 PF02742 Iron dependent repressor, metal binding and dimerisation domain SH03_RS07975 PF03600 Citrate transporter SH03_RS07980 PF17969 L,D-transpeptidase C-terminal domain SH03_RS07980 PF03734 L,D-transpeptidase catalytic domain SH03_RS07985 PF12848 ABC transporter SH03_RS07985 PF00005 ABC transporter SH03_RS07990 PF07350 Protein of unknown function (DUF1479) SH03_RS08000 PF01228 Glycine radical SH03_RS08000 PF02901 Pyruvate formate lyase-like SH03_RS08005 PF04055 Radical SAM superfamily SH03_RS08010 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH03_RS08015 PF00899 ThiF family SH03_RS08020 PF03453 MoeA N-terminal region (domain I and II) SH03_RS08020 PF00994 Probable molybdopterin binding domain SH03_RS08020 PF03454 MoeA C-terminal region (domain IV) SH03_RS08025 PF01112 Asparaginase SH03_RS08030 PF00005 ABC transporter SH03_RS08030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH03_RS08035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH03_RS08040 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS08045 PF12911 N-terminal TM domain of oligopeptide transport permease C SH03_RS08045 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS08050 PF17153 Periplasmic sensor domain, extracellular SH03_RS08050 PF00563 EAL domain SH03_RS08055 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS08055 PF17156 Gammaproteobacterial periplasmic sensor domain SH03_RS08060 PF18693 TRAM domain SH03_RS08060 PF04055 Radical SAM superfamily SH03_RS08060 PF00919 Uncharacterized protein family UPF0004 SH03_RS08065 PF10799 Biofilm formation protein (YliH/bssR) SH03_RS08070 PF07995 Glucose / Sorbosone dehydrogenase SH03_RS08075 PF00043 Glutathione S-transferase, C-terminal domain SH03_RS08075 PF13417 Glutathione S-transferase, N-terminal domain SH03_RS08080 PF07943 Penicillin-binding protein 5, C-terminal domain SH03_RS08080 PF00768 D-alanyl-D-alanine carboxypeptidase SH03_RS08085 PF00455 DeoR C terminal sensor domain SH03_RS08085 PF08220 DeoR-like helix-turn-helix domain SH03_RS08090 PF01569 PAP2 superfamily SH03_RS08095 PF07690 Major Facilitator Superfamily SH03_RS08110 PF07690 Major Facilitator Superfamily SH03_RS08115 PF00440 Bacterial regulatory proteins, tetR family SH03_RS08120 PF06826 Predicted Permease Membrane Region SH03_RS08120 PF02080 TrkA-C domain SH03_RS08125 PF11045 Putative inner membrane protein of Enterobacteriaceae SH03_RS08130 PF00462 Glutaredoxin SH03_RS08135 PF07214 Protein of unknown function (DUF1418) SH03_RS08140 PF00881 Nitroreductase family SH03_RS08145 PF08443 RimK-like ATP-grasp domain SH03_RS08145 PF18030 RimK PreATP-grasp domain SH03_RS08150 PF10722 Putative bacterial sensory transduction regulator SH03_RS08160 PF13416 Bacterial extracellular solute-binding protein SH03_RS08165 PF08402 TOBE domain SH03_RS08165 PF00005 ABC transporter SH03_RS08170 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS08175 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS08180 PF10767 Protein of unknown function (DUF2593) SH03_RS08185 PF05958 tRNA (Uracil-5-)-methyltransferase SH03_RS08190 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH03_RS08195 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS08200 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS08205 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH03_RS08210 PF00005 ABC transporter SH03_RS08215 PF12883 Protein of unknown function (DUF3828) SH03_RS08220 PF01906 Putative heavy-metal-binding SH03_RS08225 PF01510 N-acetylmuramoyl-L-alanine amidase SH03_RS08230 PF01370 NAD dependent epimerase/dehydratase family SH03_RS08235 PF13460 NAD(P)H-binding SH03_RS08235 PF11066 Protein of unknown function (DUF2867) SH03_RS08240 PF01212 Beta-eliminating lyase SH03_RS08245 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH03_RS08245 PF00205 Thiamine pyrophosphate enzyme, central domain SH03_RS08245 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH03_RS08250 PF00970 Oxidoreductase FAD-binding domain SH03_RS08250 PF00111 2Fe-2S iron-sulfur cluster binding domain SH03_RS08250 PF00175 Oxidoreductase NAD-binding domain SH03_RS08255 PF03063 Prismane/CO dehydrogenase family SH03_RS08260 PF03956 Lysine exporter LysO SH03_RS08265 PF00230 Major intrinsic protein SH03_RS08275 PF11398 Protein of unknown function (DUF2813) SH03_RS08280 PF04393 Protein of unknown function (DUF535) SH03_RS08285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH03_RS08290 PF02687 FtsX-like permease family SH03_RS08290 PF12704 MacB-like periplasmic core domain SH03_RS08290 PF00005 ABC transporter SH03_RS08295 PF00313 'Cold-shock' DNA-binding domain SH03_RS08300 PF02617 ATP-dependent Clp protease adaptor protein ClpS SH03_RS08305 PF07724 AAA domain (Cdc48 subfamily) SH03_RS08305 PF17871 AAA lid domain SH03_RS08305 PF00004 ATPase family associated with various cellular activities (AAA) SH03_RS08305 PF02861 Clp amino terminal domain, pathogenicity island component SH03_RS08305 PF10431 C-terminal, D2-small domain, of ClpB protein SH03_RS08315 PF01176 Translation initiation factor 1A / IF-1 SH03_RS08320 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SH03_RS08325 PF00664 ABC transporter transmembrane region SH03_RS08325 PF00005 ABC transporter SH03_RS08330 PF00005 ABC transporter SH03_RS08330 PF00664 ABC transporter transmembrane region SH03_RS08335 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH03_RS08340 PF01037 Lrp/AsnC ligand binding domain SH03_RS08345 PF01580 FtsK/SpoIIIE family SH03_RS08345 PF09397 Ftsk gamma domain SH03_RS08345 PF17854 FtsK alpha domain SH03_RS08345 PF13491 4TM region of DNA translocase FtsK/SpoIIIE SH03_RS08350 PF03548 Outer membrane lipoprotein carrier protein LolA SH03_RS08355 PF00004 ATPase family associated with various cellular activities (AAA) SH03_RS08355 PF12002 MgsA AAA+ ATPase C terminal SH03_RS08355 PF16193 AAA C-terminal domain SH03_RS08360 PF02403 Seryl-tRNA synthetase N-terminal domain SH03_RS08360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH03_RS08365 PF01568 Molydopterin dinucleotide binding domain SH03_RS08365 PF00384 Molybdopterin oxidoreductase SH03_RS08365 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS08370 PF12800 4Fe-4S binding domain SH03_RS08370 PF13247 4Fe-4S dicluster domain SH03_RS08375 PF04976 DMSO reductase anchor subunit (DmsC) SH03_RS08380 PF00857 Isochorismatase family SH03_RS08385 PF07690 Major Facilitator Superfamily SH03_RS08390 PF13520 Amino acid permease SH03_RS08395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS08395 PF03466 LysR substrate binding domain SH03_RS08400 PF02525 Flavodoxin-like fold SH03_RS08405 PF04055 Radical SAM superfamily SH03_RS08410 PF01228 Glycine radical SH03_RS08410 PF02901 Pyruvate formate lyase-like SH03_RS08415 PF01226 Formate/nitrite transporter SH03_RS08420 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding SH03_RS08420 PF18381 YcaO cyclodehydratase C-terminal domain SH03_RS08425 PF04239 Protein of unknown function (DUF421) SH03_RS08430 PF00266 Aminotransferase class-V SH03_RS08435 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SH03_RS08440 PF01435 Peptidase family M48 SH03_RS08445 PF02224 Cytidylate kinase SH03_RS08450 PF00575 S1 RNA binding domain SH03_RS08455 PF00216 Bacterial DNA-binding protein SH03_RS08460 PF00753 Metallo-beta-lactamase superfamily SH03_RS08460 PF03772 Competence protein SH03_RS08465 PF00005 ABC transporter SH03_RS08465 PF00664 ABC transporter transmembrane region SH03_RS08470 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SH03_RS08475 PF06224 Winged helix DNA-binding domain SH03_RS08480 PF03966 Trm112p-like protein SH03_RS08485 PF02348 Cytidylyltransferase SH03_RS08490 PF01636 Phosphotransferase enzyme family SH03_RS08495 PF02698 DUF218 domain SH03_RS08500 PF13847 Methyltransferase domain SH03_RS08505 PF17192 MukF middle domain SH03_RS08505 PF17193 MukF C-terminal domain SH03_RS08505 PF03882 MukF winged-helix domain SH03_RS08510 PF04288 MukE-like family SH03_RS08515 PF16330 MukB hinge domain SH03_RS08515 PF04310 MukB N-terminal SH03_RS08520 PF03734 L,D-transpeptidase catalytic domain SH03_RS08520 PF01471 Putative peptidoglycan binding domain SH03_RS08525 PF05951 Bacterial protein of unknown function (DUF882) SH03_RS08530 PF00753 Metallo-beta-lactamase superfamily SH03_RS08535 PF00155 Aminotransferase class I and II SH03_RS08545 PF00267 Gram-negative porin SH03_RS08550 PF01336 OB-fold nucleic acid binding domain SH03_RS08550 PF00152 tRNA synthetases class II (D, K and N) SH03_RS08555 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SH03_RS08555 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SH03_RS08560 PF11940 Domain of unknown function (DUF3458) Ig-like fold SH03_RS08560 PF17432 Domain of unknown function (DUF3458_C) ARM repeats SH03_RS08560 PF01433 Peptidase family M1 domain SH03_RS08565 PF00005 ABC transporter SH03_RS08570 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS08575 PF00296 Luciferase-like monooxygenase SH03_RS08580 PF09084 NMT1/THI5 like SH03_RS08585 PF03358 NADPH-dependent FMN reductase SH03_RS08590 PF00419 Fimbrial protein SH03_RS08595 PF02753 Pili assembly chaperone PapD, C-terminal domain SH03_RS08595 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH03_RS08600 PF13953 PapC C-terminal domain SH03_RS08600 PF13954 PapC N-terminal domain SH03_RS08600 PF00577 Outer membrane usher protein SH03_RS08605 PF00419 Fimbrial protein SH03_RS08610 PF00419 Fimbrial protein SH03_RS08615 PF00419 Fimbrial protein SH03_RS08620 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH03_RS08620 PF02753 Pili assembly chaperone PapD, C-terminal domain SH03_RS08625 PF01180 Dihydroorotate dehydrogenase SH03_RS08630 PF07126 Cell-division protein ZapC SH03_RS08635 PF03473 MOSC domain SH03_RS08635 PF03476 MOSC N-terminal beta barrel domain SH03_RS08635 PF00111 2Fe-2S iron-sulfur cluster binding domain SH03_RS08640 PF02926 THUMP domain SH03_RS08640 PF01170 Putative RNA methylase family UPF0020 SH03_RS08640 PF10672 S-adenosylmethionine-dependent methyltransferase SH03_RS08645 PF12848 ABC transporter SH03_RS08645 PF16326 ABC transporter C-terminal domain SH03_RS08645 PF00005 ABC transporter SH03_RS08650 PF04403 Paraquat-inducible protein A SH03_RS08655 PF02470 MlaD protein SH03_RS08660 PF03886 ABC-type transport auxiliary lipoprotein component SH03_RS08665 PF04957 Ribosome modulation factor SH03_RS08670 PF07977 FabA-like domain SH03_RS08675 PF05362 Lon protease (S16) C-terminal proteolytic domain SH03_RS08675 PF13654 AAA domain SH03_RS08680 PF17414 MatP C-terminal ribbon-helix-helix domain SH03_RS08680 PF06303 MatP N-terminal domain SH03_RS08685 PF00691 OmpA family SH03_RS08685 PF01389 OmpA-like transmembrane domain SH03_RS08695 PF03846 Cell division inhibitor SulA SH03_RS08700 PF04993 TfoX N-terminal domain SH03_RS08700 PF04994 TfoX C-terminal domain SH03_RS08705 PF12805 FUSC-like inner membrane protein yccS SH03_RS08710 PF03733 Inner membrane component domain SH03_RS08715 PF12462 DNA helicase IV / RNA helicase N terminal SH03_RS08715 PF00580 UvrD/REP helicase N-terminal domain SH03_RS08715 PF13361 UvrD-like helicase C-terminal domain SH03_RS08720 PF02142 MGS-like domain SH03_RS08725 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) SH03_RS08735 PF13380 CoA binding domain SH03_RS08740 PF08755 Hemimethylated DNA-binding protein YccV like SH03_RS08745 PF17785 PUA-like domain SH03_RS08745 PF10672 S-adenosylmethionine-dependent methyltransferase SH03_RS08750 PF00708 Acylphosphatase SH03_RS08755 PF04358 DsrC like protein SH03_RS08760 PF01027 Inhibitor of apoptosis-promoting Bax1 SH03_RS08770 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH03_RS08770 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SH03_RS08775 PF00374 Nickel-dependent hydrogenase SH03_RS08780 PF01292 Prokaryotic cytochrome b561 SH03_RS08785 PF01750 Hydrogenase maturation protease SH03_RS08790 PF07449 Hydrogenase-1 expression protein HyaE SH03_RS08795 PF04809 HupH hydrogenase expression protein, C-terminal conserved region SH03_RS08800 PF01654 Cytochrome bd terminal oxidase subunit I SH03_RS08805 PF02322 Cytochrome bd terminal oxidase subunit II SH03_RS08810 PF08173 Membrane bound YbgT-like protein SH03_RS08815 PF00328 Histidine phosphatase superfamily (branch 2) SH03_RS08820 PF02706 Chain length determinant protein SH03_RS08820 PF13807 G-rich domain on putative tyrosine kinase SH03_RS08820 PF13614 AAA domain SH03_RS08825 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH03_RS08830 PF18412 Outer-membrane lipoprotein Wza C-terminal domain SH03_RS08830 PF02563 Polysaccharide biosynthesis/export protein SH03_RS08830 PF10531 SLBB domain SH03_RS08835 PF06082 Exopolysaccharide biosynthesis protein YbjH SH03_RS08840 PF06251 Capsule biosynthesis GfcC SH03_RS08845 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF SH03_RS08860 PF03400 IS1 transposase SH03_RS08865 PF00313 'Cold-shock' DNA-binding domain SH03_RS08870 PF00313 'Cold-shock' DNA-binding domain SH03_RS08875 PF15939 Putative antitoxin of bacterial toxin-antitoxin system SH03_RS08880 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system SH03_RS08885 PF12801 4Fe-4S binding domain SH03_RS08890 PF01627 Hpt domain SH03_RS08890 PF00672 HAMP domain SH03_RS08890 PF00072 Response regulator receiver domain SH03_RS08890 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS08890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS08895 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH03_RS08900 PF00486 Transcriptional regulatory protein, C terminal SH03_RS08900 PF00072 Response regulator receiver domain SH03_RS08905 PF03264 NapC/NirT cytochrome c family, N-terminal region SH03_RS08910 PF00384 Molybdopterin oxidoreductase SH03_RS08910 PF18364 Molybdopterin oxidoreductase N-terminal domain SH03_RS08910 PF01568 Molydopterin dinucleotide binding domain SH03_RS08915 PF02613 Nitrate reductase delta subunit SH03_RS08925 PF01556 DnaJ C terminal domain SH03_RS08925 PF00226 DnaJ domain SH03_RS08935 PF00328 Histidine phosphatase superfamily (branch 2) SH03_RS08940 PF13993 YccJ-like protein SH03_RS08945 PF03358 NADPH-dependent FMN reductase SH03_RS08955 PF10685 Stress-induced bacterial acidophilic repeat motif SH03_RS08960 PF00860 Permease family SH03_RS08965 PF01613 Flavin reductase like domain SH03_RS08970 PF00881 Nitroreductase family SH03_RS08975 PF12697 Alpha/beta hydrolase family SH03_RS08980 PF01042 Endoribonuclease L-PSP SH03_RS08985 PF00857 Isochorismatase family SH03_RS08990 PF00296 Luciferase-like monooxygenase SH03_RS08995 PF00440 Bacterial regulatory proteins, tetR family SH03_RS08995 PF08362 YcdC-like protein, C-terminal region SH03_RS09000 PF01619 Proline dehydrogenase SH03_RS09000 PF14850 DNA-binding domain of Proline dehydrogenase SH03_RS09000 PF18327 Proline utilization A proline dehydrogenase N-terminal domain SH03_RS09000 PF00171 Aldehyde dehydrogenase family SH03_RS09010 PF00474 Sodium:solute symporter family SH03_RS09025 PF13473 Cupredoxin-like domain SH03_RS09025 PF09375 Imelysin SH03_RS09030 PF04261 Dyp-type peroxidase family SH03_RS09040 PF02562 PhoH-like protein SH03_RS09045 PF13994 PgaD-like protein SH03_RS09050 PF00535 Glycosyl transferase family 2 SH03_RS09055 PF14883 Hypothetical glycosyl hydrolase family 13 SH03_RS09055 PF01522 Polysaccharide deacetylase SH03_RS09065 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS09065 PF17158 Membrane-associated sensor, integral membrane domain SH03_RS09070 PF00665 Integrase core domain SH03_RS09070 PF13333 Integrase core domain SH03_RS09070 PF13276 HTH-like domain SH03_RS09075 PF01527 Transposase SH03_RS09100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH03_RS09105 PF02811 PHP domain SH03_RS09110 PF02613 Nitrate reductase delta subunit SH03_RS09115 PF06496 Protein of unknown function (DUF1097) SH03_RS09120 PF03783 Curli production assembly/transport component CsgG SH03_RS09125 PF10614 Type VIII secretion system (T8SS), CsgF protein SH03_RS09130 PF10627 Curli assembly protein CsgE SH03_RS09135 PF00196 Bacterial regulatory proteins, luxR family SH03_RS09145 PF07012 Curlin associated repeat SH03_RS09150 PF07012 Curlin associated repeat SH03_RS09155 PF10610 Thin aggregative fimbriae synthesis protein SH03_RS09165 PF01661 Macro domain SH03_RS09170 PF13091 PLD-like domain SH03_RS09175 PF01757 Acyltransferase family SH03_RS09190 PF04349 Periplasmic glucan biosynthesis protein, MdoG SH03_RS09195 PF00535 Glycosyl transferase family 2 SH03_RS09200 PF07119 Protein of unknown function (DUF1375) SH03_RS09205 PF13984 MsyB protein SH03_RS09215 PF07690 Major Facilitator Superfamily SH03_RS09220 PF03279 Bacterial lipid A biosynthesis acyltransferase SH03_RS09225 PF00581 Rhodanese-like domain SH03_RS09225 PF12368 Rhodanase C-terminal SH03_RS09225 PF17773 UPF0176 acylphosphatase like domain SH03_RS09230 PF04264 YceI-like domain SH03_RS09235 PF01292 Prokaryotic cytochrome b561 SH03_RS09240 PF10968 Protein of unknown function (DUF2770) SH03_RS09245 PF01266 FAD dependent oxidoreductase SH03_RS09250 PF13991 BssS protein family SH03_RS09255 PF06183 DinI-like family SH03_RS09260 PF01979 Amidohydrolase family SH03_RS09265 PF07273 Protein of unknown function (DUF1439) SH03_RS09270 PF04399 Glutaredoxin 2, C terminal domain SH03_RS09270 PF13417 Glutathione S-transferase, N-terminal domain SH03_RS09275 PF07690 Major Facilitator Superfamily SH03_RS09280 PF13302 Acetyltransferase (GNAT) domain SH03_RS09285 PF04337 Protein of unknown function, DUF480 SH03_RS09290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH03_RS09295 PF03023 Lipid II flippase MurJ SH03_RS09300 PF05130 FlgN protein SH03_RS09305 PF04316 Anti-sigma-28 factor, FlgM SH03_RS09310 PF13144 Chaperone for flagella basal body P-ring formation SH03_RS09315 PF00460 Flagella basal body rod protein SH03_RS09320 PF00460 Flagella basal body rod protein SH03_RS09320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH03_RS09325 PF03963 Flagellar hook capping protein - N-terminal region SH03_RS09325 PF13860 FlgD Ig-like domain SH03_RS09325 PF13861 FlgD Tudor-like domain SH03_RS09330 PF07559 Flagellar basal body protein FlaE SH03_RS09330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH03_RS09330 PF00460 Flagella basal body rod protein SH03_RS09335 PF00460 Flagella basal body rod protein SH03_RS09335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH03_RS09340 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH03_RS09340 PF00460 Flagella basal body rod protein SH03_RS09345 PF02107 Flagellar L-ring protein SH03_RS09350 PF02119 Flagellar P-ring protein SH03_RS09355 PF10135 Rod binding protein SH03_RS09355 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH03_RS09360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH03_RS09360 PF00460 Flagella basal body rod protein SH03_RS09365 PF00669 Bacterial flagellin N-terminal helical region SH03_RS09370 PF12111 Polyribonucleotide phosphorylase C terminal SH03_RS09370 PF10150 Ribonuclease E/G family SH03_RS09370 PF00575 S1 RNA binding domain SH03_RS09380 PF01479 S4 domain SH03_RS09380 PF00849 RNA pseudouridylate synthase SH03_RS09385 PF02545 Maf-like protein SH03_RS09390 PF02620 Large ribosomal RNA subunit accumulation protein YceD SH03_RS09395 PF01783 Ribosomal L32p protein family SH03_RS09400 PF02504 Fatty acid synthesis protein SH03_RS09405 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SH03_RS09405 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SH03_RS09410 PF00698 Acyl transferase domain SH03_RS09420 PF00550 Phosphopantetheine attachment site SH03_RS09425 PF02801 Beta-ketoacyl synthase, C-terminal domain SH03_RS09425 PF00109 Beta-ketoacyl synthase, N-terminal domain SH03_RS09430 PF01063 Amino-transferase class IV SH03_RS09435 PF02618 YceG-like family SH03_RS09440 PF02223 Thymidylate kinase SH03_RS09445 PF09115 DNA polymerase III, delta subunit, C terminal SH03_RS09450 PF01026 TatD related DNase SH03_RS09455 PF02378 Phosphotransferase system, EIIC SH03_RS09455 PF00367 phosphotransferase system, EIIB SH03_RS09460 PF00593 TonB dependent receptor SH03_RS09460 PF07715 TonB-dependent Receptor Plug Domain SH03_RS09465 PF01230 HIT domain SH03_RS09470 PF07233 Protein of unknown function (DUF1425) SH03_RS09475 PF13036 Peptidoglycan-synthase activator LpoB SH03_RS09480 PF01636 Phosphotransferase enzyme family SH03_RS09485 PF00933 Glycosyl hydrolase family 3 N terminal domain SH03_RS09490 PF05728 Uncharacterised protein family (UPF0227) SH03_RS09495 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH03_RS09500 PF05433 Glycine zipper 2TM domain SH03_RS09505 PF00440 Bacterial regulatory proteins, tetR family SH03_RS09510 PF07338 Protein of unknown function (DUF1471) SH03_RS09515 PF03734 L,D-transpeptidase catalytic domain SH03_RS09515 PF17969 L,D-transpeptidase C-terminal domain SH03_RS09515 PF01476 LysM domain SH03_RS09520 PF02559 CarD-like/TRCF domain SH03_RS09520 PF03461 TRCF domain SH03_RS09520 PF00270 DEAD/DEAH box helicase SH03_RS09520 PF00271 Helicase conserved C-terminal domain SH03_RS09520 PF17757 UvrB interaction domain SH03_RS09525 PF01757 Acyltransferase family SH03_RS09530 PF02687 FtsX-like permease family SH03_RS09530 PF12704 MacB-like periplasmic core domain SH03_RS09535 PF00005 ABC transporter SH03_RS09540 PF12704 MacB-like periplasmic core domain SH03_RS09540 PF02687 FtsX-like permease family SH03_RS09545 PF00480 ROK family SH03_RS09550 PF02146 Sir2 family SH03_RS09555 PF04536 TPM domain SH03_RS09560 PF12158 Protein of unknown function (DUF3592) SH03_RS09565 PF13416 Bacterial extracellular solute-binding protein SH03_RS09570 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS09575 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS09580 PF00005 ABC transporter SH03_RS09580 PF08402 TOBE domain SH03_RS09590 PF07687 Peptidase dimerisation domain SH03_RS09590 PF01546 Peptidase family M20/M25/M40 SH03_RS09595 PF08007 Cupin superfamily protein SH03_RS09600 PF08918 PhoQ Sensor SH03_RS09600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS09605 PF00072 Response regulator receiver domain SH03_RS09605 PF00486 Transcriptional regulatory protein, C terminal SH03_RS09610 PF00206 Lyase SH03_RS09610 PF08328 Adenylosuccinate lyase C-terminal SH03_RS09615 PF04356 Protein of unknown function (DUF489) SH03_RS09625 PF00293 NUDIX domain SH03_RS09630 PF00849 RNA pseudouridylate synthase SH03_RS09635 PF00180 Isocitrate/isopropylmalate dehydrogenase SH03_RS09650 PF07166 Protein of unknown function (DUF1398) SH03_RS09655 PF13411 MerR HTH family regulatory protein SH03_RS09660 PF04940 Sensors of blue-light using FAD SH03_RS09660 PF00563 EAL domain SH03_RS09665 PF10798 Biofilm development protein YmgB/AriR SH03_RS09675 PF10798 Biofilm development protein YmgB/AriR SH03_RS09685 PF00563 EAL domain SH03_RS09685 PF12792 CSS motif domain associated with EAL SH03_RS09710 PF16456 YmgD protein SH03_RS09715 PF13436 Glycine-zipper domain SH03_RS09730 PF03776 Septum formation topological specificity factor MinE SH03_RS09735 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SH03_RS09740 PF05209 Septum formation inhibitor MinC, N-terminal domain SH03_RS09740 PF03775 Septum formation inhibitor MinC, C-terminal domain SH03_RS09745 PF05666 Fels-1 Prophage Protein-like SH03_RS09750 PF04151 Bacterial pre-peptidase C-terminal domain SH03_RS09760 PF05166 YcgL domain SH03_RS09765 PF01557 Fumarylacetoacetate (FAA) hydrolase family SH03_RS09770 PF03692 Putative zinc- or iron-chelating domain SH03_RS09775 PF06109 Haemolysin E (HlyE) SH03_RS09780 PF00717 Peptidase S24-like SH03_RS09785 PF11799 impB/mucB/samB family C-terminal domain SH03_RS09785 PF11798 IMS family HHH motif SH03_RS09785 PF00817 impB/mucB/samB family SH03_RS09785 PF13438 Domain of unknown function (DUF4113) SH03_RS09790 PF02600 Disulfide bond formation protein DsbB SH03_RS09795 PF06450 Bacterial Na+/H+ antiporter B (NhaB) SH03_RS09800 PF07840 FadR C-terminal domain SH03_RS09800 PF00392 Bacterial regulatory proteins, gntR family SH03_RS09805 PF04293 SpoVR like protein SH03_RS09810 PF01266 FAD dependent oxidoreductase SH03_RS09815 PF01168 Alanine racemase, N-terminal domain SH03_RS09815 PF00842 Alanine racemase, C-terminal domain SH03_RS09820 PF00999 Sodium/hydrogen exchanger family SH03_RS09820 PF02080 TrkA-C domain SH03_RS09820 PF03471 Transporter associated domain SH03_RS09825 PF17676 LD-carboxypeptidase C-terminal domain SH03_RS09825 PF02016 LD-carboxypeptidase N-terminal domain SH03_RS09830 PF01464 Transglycosylase SLT domain SH03_RS09835 PF07317 Flagellar regulator YcgR SH03_RS09835 PF07238 PilZ domain SH03_RS09840 PF04226 Transglycosylase associated protein SH03_RS09850 PF01204 Trehalase SH03_RS09855 PF03610 PTS system fructose IIA component SH03_RS09855 PF05524 PEP-utilising enzyme, N-terminal SH03_RS09855 PF00391 PEP-utilising enzyme, mobile domain SH03_RS09855 PF00381 PTS HPr component phosphorylation site SH03_RS09860 PF02734 DAK2 domain SH03_RS09865 PF02733 Dak1 domain SH03_RS09870 PF00989 PAS fold SH03_RS09870 PF02954 Bacterial regulatory protein, Fis family SH03_RS09870 PF00158 Sigma-54 interaction domain SH03_RS09875 PF03212 Pertactin SH03_RS09875 PF03797 Autotransporter beta-domain SH03_RS09885 PF01926 50S ribosome-binding GTPase SH03_RS09885 PF06071 Protein of unknown function (DUF933) SH03_RS09890 PF01195 Peptidyl-tRNA hydrolase SH03_RS09895 PF10762 Protein of unknown function (DUF2583) SH03_RS09900 PF00916 Sulfate permease family SH03_RS09900 PF01740 STAS domain SH03_RS09905 PF14572 Phosphoribosyl synthetase-associated domain SH03_RS09905 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SH03_RS09910 PF00288 GHMP kinases N terminal domain SH03_RS09910 PF08544 GHMP kinases C terminal SH03_RS09915 PF03550 Outer membrane lipoprotein LolB SH03_RS09920 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SH03_RS09920 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SH03_RS09920 PF01488 Shikimate / quinate 5-dehydrogenase SH03_RS09925 PF00472 RF-1 domain SH03_RS09925 PF03462 PCRF domain SH03_RS09930 PF17827 PrmC N-terminal domain SH03_RS09930 PF13847 Methyltransferase domain SH03_RS09935 PF04247 Invasion gene expression up-regulator, SirB SH03_RS09940 PF13369 Transglutaminase-like superfamily SH03_RS09945 PF00793 DAHP synthetase I family SH03_RS09950 PF13940 Toxin Ldr, type I toxin-antitoxin system SH03_RS09955 PF13940 Toxin Ldr, type I toxin-antitoxin system SH03_RS09960 PF01699 Sodium/calcium exchanger protein SH03_RS09965 PF06150 ChaB SH03_RS09970 PF04752 ChaC-like protein SH03_RS09975 PF02635 DsrE/DsrF-like family SH03_RS09980 PF11924 Inverse autotransporter, beta-domain SH03_RS09985 PF00072 Response regulator receiver domain SH03_RS09985 PF00196 Bacterial regulatory proteins, luxR family SH03_RS09990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS09990 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SH03_RS09990 PF00672 HAMP domain SH03_RS09990 PF07730 Histidine kinase SH03_RS10000 PF07690 Major Facilitator Superfamily SH03_RS10005 PF14710 Respiratory nitrate reductase alpha N-terminal SH03_RS10005 PF01568 Molydopterin dinucleotide binding domain SH03_RS10005 PF00384 Molybdopterin oxidoreductase SH03_RS10010 PF14711 Respiratory nitrate reductase beta C-terminal SH03_RS10010 PF13247 4Fe-4S dicluster domain SH03_RS10015 PF02613 Nitrate reductase delta subunit SH03_RS10020 PF02665 Nitrate reductase gamma subunit SH03_RS10040 PF01842 ACT domain SH03_RS10040 PF00551 Formyl transferase SH03_RS10045 PF02810 SEC-C motif SH03_RS10050 PF01734 Patatin-like phospholipase SH03_RS10055 PF00072 Response regulator receiver domain SH03_RS10060 PF00483 Nucleotidyl transferase SH03_RS10065 PF00816 H-NS histone family SH03_RS10070 PF00265 Thymidine kinase SH03_RS10075 PF13006 Insertion element 4 transposase N-terminal SH03_RS10075 PF01609 Transposase DDE domain SH03_RS10085 PF00465 Iron-containing alcohol dehydrogenase SH03_RS10085 PF00171 Aldehyde dehydrogenase family SH03_RS10090 PF01914 MarC family integral membrane protein SH03_RS10095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH03_RS10100 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS10105 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS10105 PF12911 N-terminal TM domain of oligopeptide transport permease C SH03_RS10110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH03_RS10110 PF00005 ABC transporter SH03_RS10115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH03_RS10115 PF00005 ABC transporter SH03_RS10120 PF04269 Protein of unknown function, DUF440 SH03_RS10125 PF13396 Phospholipase_D-nuclease N-terminal SH03_RS10125 PF13091 PLD-like domain SH03_RS10135 PF02254 TrkA-N domain SH03_RS10135 PF07885 Ion channel SH03_RS10140 PF03795 YCII-related domain SH03_RS10145 PF03544 Gram-negative bacterial TonB protein C-terminal SH03_RS10150 PF03061 Thioesterase superfamily SH03_RS10155 PF04279 Intracellular septation protein A SH03_RS10165 PF03922 OmpW family SH03_RS10170 PF05974 Domain of unknown function (DUF892) SH03_RS10175 PF05974 Domain of unknown function (DUF892) SH03_RS10180 PF10685 Stress-induced bacterial acidophilic repeat motif SH03_RS10185 PF00290 Tryptophan synthase alpha chain SH03_RS10190 PF00291 Pyridoxal-phosphate dependent enzyme SH03_RS10195 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SH03_RS10195 PF00218 Indole-3-glycerol phosphate synthase SH03_RS10200 PF00117 Glutamine amidotransferase class-I SH03_RS10200 PF02885 Glycosyl transferase family, helical bundle domain SH03_RS10200 PF00591 Glycosyl transferase family, a/b domain SH03_RS10205 PF04715 Anthranilate synthase component I, N terminal region SH03_RS10205 PF00425 chorismate binding enzyme SH03_RS10210 PF02811 PHP domain SH03_RS10215 PF01300 Telomere recombination SH03_RS10220 PF09972 Predicted membrane protein (DUF2207) SH03_RS10225 PF01479 S4 domain SH03_RS10225 PF00849 RNA pseudouridylate synthase SH03_RS10230 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP SH03_RS10230 PF12557 Cob(I)alamin adenosyltransferase N terminal SH03_RS10235 PF00106 short chain dehydrogenase SH03_RS10245 PF01343 Peptidase family S49 SH03_RS10245 PF08496 Peptidase family S49 N-terminal SH03_RS10250 PF10692 Protein of unknown function (DUF2498) SH03_RS10260 PF01131 DNA topoisomerase SH03_RS10260 PF01396 Topoisomerase DNA binding C4 zinc finger SH03_RS10260 PF01751 Toprim domain SH03_RS10260 PF08272 Topoisomerase I zinc-ribbon-like SH03_RS10265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS10265 PF03466 LysR substrate binding domain SH03_RS10285 PF00694 Aconitase C-terminal domain SH03_RS10285 PF00330 Aconitase family (aconitate hydratase) SH03_RS10290 PF00925 GTP cyclohydrolase II SH03_RS10295 PF01569 PAP2 superfamily SH03_RS10300 PF06305 Lipopolysaccharide assembly protein A domain SH03_RS10305 PF18073 Rubredoxin metal binding domain SH03_RS10310 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH03_RS10315 PF01253 Translation initiation factor SUI1 SH03_RS10320 PF05433 Glycine zipper 2TM domain SH03_RS10325 PF00455 DeoR C terminal sensor domain SH03_RS10325 PF08220 DeoR-like helix-turn-helix domain SH03_RS10335 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS10335 PF13426 PAS domain SH03_RS10335 PF00563 EAL domain SH03_RS10345 PF17876 Cold shock domain SH03_RS10345 PF08206 Ribonuclease B OB domain SH03_RS10345 PF00575 S1 RNA binding domain SH03_RS10345 PF00773 RNB domain SH03_RS10360 PF04480 Protein of unknown function (DUF559) SH03_RS10365 PF00005 ABC transporter SH03_RS10370 PF00005 ABC transporter SH03_RS10370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH03_RS10375 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS10375 PF12911 N-terminal TM domain of oligopeptide transport permease C SH03_RS10380 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS10385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH03_RS10395 PF10820 Protein of unknown function (DUF2543) SH03_RS10400 PF00324 Amino acid permease SH03_RS10405 PF00120 Glutamine synthetase, catalytic domain SH03_RS10410 PF07722 Peptidase C26 SH03_RS10415 PF01381 Helix-turn-helix SH03_RS10415 PF07883 Cupin domain SH03_RS10420 PF00171 Aldehyde dehydrogenase family SH03_RS10425 PF01266 FAD dependent oxidoreductase SH03_RS10430 PF00202 Aminotransferase class-III SH03_RS10435 PF00158 Sigma-54 interaction domain SH03_RS10435 PF02954 Bacterial regulatory protein, Fis family SH03_RS10440 PF04012 PspA/IM30 family SH03_RS10445 PF06667 Phage shock protein B SH03_RS10450 PF04024 PspC domain SH03_RS10455 PF09584 Phage shock protein PspD (Phageshock_PspD) SH03_RS10460 PF00581 Rhodanese-like domain SH03_RS10465 PF00128 Alpha amylase, catalytic domain SH03_RS10470 PF01547 Bacterial extracellular solute-binding protein SH03_RS10475 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS10480 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS10485 PF00107 Zinc-binding dehydrogenase SH03_RS10490 PF01261 Xylose isomerase-like TIM barrel SH03_RS10495 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH03_RS10495 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH03_RS10500 PF03633 Glycosyl hydrolase family 65, C-terminal domain SH03_RS10500 PF03632 Glycosyl hydrolase family 65 central catalytic domain SH03_RS10500 PF03636 Glycosyl hydrolase family 65, N-terminal domain SH03_RS10505 PF13419 Haloacid dehalogenase-like hydrolase SH03_RS10515 PF09381 Outer membrane protein G (OmpG) SH03_RS10520 PF00356 Bacterial regulatory proteins, lacI family SH03_RS10520 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH03_RS10525 PF04317 YcjX-like family, DUF463 SH03_RS10530 PF05128 Domain of unknown function (DUF697) SH03_RS10535 PF18024 Helix-turn-helix domain SH03_RS10535 PF00158 Sigma-54 interaction domain SH03_RS10535 PF13188 PAS domain SH03_RS10540 PF08534 Redoxin SH03_RS10545 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH03_RS10545 PF13378 Enolase C-terminal domain-like SH03_RS10550 PF00246 Zinc carboxypeptidase SH03_RS10560 PF12146 Serine aminopeptidase, S33 SH03_RS10565 PF03466 LysR substrate binding domain SH03_RS10565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS10575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH03_RS10580 PF00924 Mechanosensitive ion channel SH03_RS10585 PF01609 Transposase DDE domain SH03_RS10585 PF05598 Transposase domain (DUF772) SH03_RS10590 PF10749 Protein of unknown function (DUF2534) SH03_RS10595 PF00582 Universal stress protein family SH03_RS10600 PF00325 Bacterial regulatory proteins, crp family SH03_RS10600 PF00027 Cyclic nucleotide-binding domain SH03_RS10605 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SH03_RS10605 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH03_RS10610 PF03806 AbgT putative transporter family SH03_RS10620 PF01546 Peptidase family M20/M25/M40 SH03_RS10625 PF01546 Peptidase family M20/M25/M40 SH03_RS10625 PF07687 Peptidase dimerisation domain SH03_RS10630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS10630 PF03466 LysR substrate binding domain SH03_RS10640 PF01713 Smr domain SH03_RS10645 PF08448 PAS fold SH03_RS10645 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS10650 PF01544 CorA-like Mg2+ transporter protein SH03_RS10660 PF03880 DbpA RNA binding domain SH03_RS10660 PF00270 DEAD/DEAH box helicase SH03_RS10660 PF00271 Helicase conserved C-terminal domain SH03_RS10665 PF01171 PP-loop family SH03_RS10670 PF12167 Arm DNA-binding domain SH03_RS10670 PF00589 Phage integrase family SH03_RS10675 PF06806 Putative excisionase (DUF1233) SH03_RS10680 PF06688 Protein of unknown function (DUF1187) SH03_RS10690 PF03837 RecT family SH03_RS10695 PF12684 PDDEXK-like domain of unknown function (DUF3799) SH03_RS10695 PF06630 Enterobacterial exodeoxyribonuclease VIII SH03_RS10705 PF04181 Rtr1/RPAP2 family SH03_RS10715 PF14163 Super-infection exclusion protein B SH03_RS10725 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT SH03_RS10730 PF06254 Putative bacterial toxin ydaT SH03_RS10735 PF07120 Protein of unknown function (DUF1376) SH03_RS10740 PF01695 IstB-like ATP binding protein SH03_RS10745 PF07789 Protein of unknown function (DUF1627) SH03_RS10750 PF03245 Bacteriophage Rz lysis protein SH03_RS10755 PF02386 Cation transport protein SH03_RS10760 PF02195 ParB-like nuclease domain SH03_RS10775 PF06791 Prophage tail length tape measure protein SH03_RS10780 PF06316 Enterobacterial Ail/Lom protein SH03_RS10785 PF05598 Transposase domain (DUF772) SH03_RS10785 PF01609 Transposase DDE domain SH03_RS10790 PF13505 Outer membrane protein beta-barrel domain SH03_RS10805 PF03335 Phage tail fibre repeat SH03_RS10805 PF07484 Phage Tail Collar Domain SH03_RS10805 PF08400 Prophage tail fibre N-terminal SH03_RS10810 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH03_RS10815 PF00239 Resolvase, N terminal domain SH03_RS10815 PF02796 Helix-turn-helix domain of resolvase SH03_RS10825 PF00582 Universal stress protein family SH03_RS10830 PF00267 Gram-negative porin SH03_RS10835 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SH03_RS10835 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SH03_RS10835 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SH03_RS10835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH03_RS10835 PF10371 Domain of unknown function SH03_RS10840 PF03891 Domain of unknown function (DUF333) SH03_RS10845 PF03724 META domain SH03_RS10850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH03_RS10850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH03_RS10855 PF11739 Dicarboxylate transport SH03_RS10860 PF13617 YnbE-like lipoprotein SH03_RS10865 PF07027 Protein of unknown function (DUF1318) SH03_RS10870 PF14525 AraC-binding-like domain SH03_RS10870 PF12833 Helix-turn-helix domain SH03_RS10875 PF00171 Aldehyde dehydrogenase family SH03_RS10880 PF07833 Copper amine oxidase N-terminal domain SH03_RS10880 PF02728 Copper amine oxidase, N3 domain SH03_RS10880 PF01179 Copper amine oxidase, enzyme domain SH03_RS10880 PF02727 Copper amine oxidase, N2 domain SH03_RS10885 PF00171 Aldehyde dehydrogenase family SH03_RS10885 PF01575 MaoC like domain SH03_RS10890 PF05138 Phenylacetic acid catabolic protein SH03_RS10895 PF06243 Phenylacetic acid degradation B SH03_RS10900 PF05138 Phenylacetic acid catabolic protein SH03_RS10905 PF01883 Iron-sulfur cluster assembly protein SH03_RS10910 PF00111 2Fe-2S iron-sulfur cluster binding domain SH03_RS10910 PF00970 Oxidoreductase FAD-binding domain SH03_RS10910 PF00175 Oxidoreductase NAD-binding domain SH03_RS10915 PF00378 Enoyl-CoA hydratase/isomerase SH03_RS10920 PF00378 Enoyl-CoA hydratase/isomerase SH03_RS10925 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH03_RS10925 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain SH03_RS10925 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH03_RS10930 PF03061 Thioesterase superfamily SH03_RS10935 PF02803 Thiolase, C-terminal domain SH03_RS10935 PF00108 Thiolase, N-terminal domain SH03_RS10940 PF00501 AMP-binding enzyme SH03_RS10940 PF14535 AMP-binding enzyme C-terminal domain SH03_RS10945 PF07848 PaaX-like protein SH03_RS10945 PF08223 PaaX-like protein C-terminal domain SH03_RS10950 PF00132 Bacterial transferase hexapeptide (six repeats) SH03_RS10960 PF13276 HTH-like domain SH03_RS10960 PF00665 Integrase core domain SH03_RS10965 PF01527 Transposase SH03_RS10970 PF13936 Helix-turn-helix domain SH03_RS10970 PF00665 Integrase core domain SH03_RS10980 PF00248 Aldo/keto reductase family SH03_RS10985 PF10971 Protein of unknown function (DUF2773) SH03_RS10990 PF01066 CDP-alcohol phosphatidyltransferase SH03_RS11000 PF12147 Putative methyltransferase SH03_RS11000 PF12146 Serine aminopeptidase, S33 SH03_RS11005 PF00782 Dual specificity phosphatase, catalytic domain SH03_RS11010 PF02525 Flavodoxin-like fold SH03_RS11015 PF00271 Helicase conserved C-terminal domain SH03_RS11015 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold SH03_RS11015 PF11898 Domain of unknown function (DUF3418) SH03_RS11015 PF00270 DEAD/DEAH box helicase SH03_RS11015 PF04408 Helicase associated domain (HA2) SH03_RS11020 PF02698 DUF218 domain SH03_RS11025 PF00171 Aldehyde dehydrogenase family SH03_RS11030 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH03_RS11030 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH03_RS11035 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH03_RS11035 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH03_RS11040 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH03_RS11040 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH03_RS11045 PF01292 Prokaryotic cytochrome b561 SH03_RS11055 PF01848 Hok/gef family SH03_RS11060 PF02203 Tar ligand binding domain homologue SH03_RS11060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH03_RS11060 PF00672 HAMP domain SH03_RS11065 PF03466 LysR substrate binding domain SH03_RS11065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS11070 PF07063 Domain of unknown function (DUF1338) SH03_RS11075 PF04349 Periplasmic glucan biosynthesis protein, MdoG SH03_RS11085 PF04325 Protein of unknown function (DUF465) SH03_RS11090 PF13302 Acetyltransferase (GNAT) domain SH03_RS11095 PF18836 Beta solenoid repeat from YDCK SH03_RS11100 PF03595 Voltage-dependent anion channel SH03_RS11105 PF03848 Tellurite resistance protein TehB SH03_RS11110 PF11769 Protein of unknown function (DUF3313) SH03_RS11120 PF01797 Transposase IS200 like SH03_RS11125 PF07282 Putative transposase DNA-binding domain SH03_RS11125 PF01385 Probable transposase SH03_RS11125 PF12323 Helix-turn-helix domain SH03_RS11130 PF03594 Benzoate membrane transport protein SH03_RS11135 PF01381 Helix-turn-helix SH03_RS11135 PF07883 Cupin domain SH03_RS11140 PF01136 Peptidase family U32 SH03_RS11140 PF12392 Collagenase SH03_RS11145 PF10829 Protein of unknown function (DUF2554) SH03_RS11150 PF07927 HicA toxin of bacterial toxin-antitoxin, SH03_RS11155 PF01381 Helix-turn-helix SH03_RS11155 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system SH03_RS11160 PF00155 Aminotransferase class I and II SH03_RS11160 PF00392 Bacterial regulatory proteins, gntR family SH03_RS11165 PF13416 Bacterial extracellular solute-binding protein SH03_RS11170 PF00005 ABC transporter SH03_RS11170 PF08402 TOBE domain SH03_RS11175 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS11180 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS11185 PF00171 Aldehyde dehydrogenase family SH03_RS11195 PF10753 Toxin GhoT_OrtT SH03_RS11200 PF10735 Protein of unknown function (DUF2526) SH03_RS11205 PF04657 Putative inner membrane exporter, YdcZ SH03_RS11210 PF00583 Acetyltransferase (GNAT) family SH03_RS11215 PF00107 Zinc-binding dehydrogenase SH03_RS11215 PF16884 N-terminal domain of oxidoreductase SH03_RS11220 PF00392 Bacterial regulatory proteins, gntR family SH03_RS11220 PF07729 FCD domain SH03_RS11225 PF00593 TonB dependent receptor SH03_RS11225 PF07715 TonB-dependent Receptor Plug Domain SH03_RS11235 PF00324 Amino acid permease SH03_RS11240 PF13417 Glutathione S-transferase, N-terminal domain SH03_RS11245 PF17520 Family of unknown function (DUF5445) SH03_RS11250 PF03527 RHS protein SH03_RS11260 PF01609 Transposase DDE domain SH03_RS11260 PF13808 DDE_Tnp_1-associated SH03_RS11265 PF13808 DDE_Tnp_1-associated SH03_RS11265 PF01609 Transposase DDE domain SH03_RS11270 PF01361 Tautomerase enzyme SH03_RS11275 PF01613 Flavin reductase like domain SH03_RS11280 PF00797 N-acetyltransferase SH03_RS11285 PF02567 Phenazine biosynthesis-like protein SH03_RS11290 PF02665 Nitrate reductase gamma subunit SH03_RS11295 PF02613 Nitrate reductase delta subunit SH03_RS11300 PF13247 4Fe-4S dicluster domain SH03_RS11300 PF14711 Respiratory nitrate reductase beta C-terminal SH03_RS11305 PF00384 Molybdopterin oxidoreductase SH03_RS11305 PF01568 Molydopterin dinucleotide binding domain SH03_RS11305 PF14710 Respiratory nitrate reductase alpha N-terminal SH03_RS11310 PF07690 Major Facilitator Superfamily SH03_RS11320 PF00267 Gram-negative porin SH03_RS11325 PF00892 EamA-like transporter family SH03_RS11330 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS11330 PF01568 Molydopterin dinucleotide binding domain SH03_RS11330 PF00384 Molybdopterin oxidoreductase SH03_RS11335 PF01568 Molydopterin dinucleotide binding domain SH03_RS11335 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS11335 PF00384 Molybdopterin oxidoreductase SH03_RS11340 PF12800 4Fe-4S binding domain SH03_RS11340 PF09163 Formate dehydrogenase N, transmembrane SH03_RS11340 PF13247 4Fe-4S dicluster domain SH03_RS11345 PF01292 Prokaryotic cytochrome b561 SH03_RS11350 PF01381 Helix-turn-helix SH03_RS11355 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS11355 PF00107 Zinc-binding dehydrogenase SH03_RS11360 PF00390 Malic enzyme, N-terminal domain SH03_RS11360 PF03949 Malic enzyme, NAD binding domain SH03_RS11365 PF08136 30S ribosomal protein subunit S22 family SH03_RS11370 PF10684 Putative biofilm-dependent modulation protein SH03_RS11375 PF02566 OsmC-like protein SH03_RS11380 PF00005 ABC transporter SH03_RS11380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH03_RS11385 PF00005 ABC transporter SH03_RS11385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH03_RS11390 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS11390 PF12911 N-terminal TM domain of oligopeptide transport permease C SH03_RS11395 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS11400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH03_RS11405 PF01427 D-ala-D-ala dipeptidase SH03_RS11410 PF00563 EAL domain SH03_RS11410 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS11410 PF13426 PAS domain SH03_RS11415 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS11420 PF02638 Glycosyl hydrolase-like 10 SH03_RS11425 PF13520 Amino acid permease SH03_RS11430 PF00282 Pyridoxal-dependent decarboxylase conserved domain SH03_RS11440 PF00675 Insulinase (Peptidase family M16) SH03_RS11440 PF05193 Peptidase M16 inactive domain SH03_RS11445 PF07715 TonB-dependent Receptor Plug Domain SH03_RS11450 PF06472 ABC transporter transmembrane region 2 SH03_RS11450 PF00005 ABC transporter SH03_RS11455 PF13186 Iron-sulfur cluster-binding domain SH03_RS11455 PF04055 Radical SAM superfamily SH03_RS11460 PF00884 Sulfatase SH03_RS11465 PF12833 Helix-turn-helix domain SH03_RS11470 PF17073 Two-component-system connector protein SH03_RS11475 PF00384 Molybdopterin oxidoreductase SH03_RS11480 PF09160 FimH, mannose binding SH03_RS11485 PF00419 Fimbrial protein SH03_RS11490 PF00419 Fimbrial protein SH03_RS11495 PF00577 Outer membrane usher protein SH03_RS11495 PF13953 PapC C-terminal domain SH03_RS11505 PF13657 HipA N-terminal domain SH03_RS11505 PF07804 HipA-like C-terminal domain SH03_RS11510 PF01381 Helix-turn-helix SH03_RS11515 PF03797 Autotransporter beta-domain SH03_RS11520 PF13018 Extended Signal Peptide of Type V secretion system SH03_RS11525 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH03_RS11525 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH03_RS11530 PF04198 Putative sugar-binding domain SH03_RS11535 PF00005 ABC transporter SH03_RS11540 PF02653 Branched-chain amino acid transport system / permease component SH03_RS11545 PF02653 Branched-chain amino acid transport system / permease component SH03_RS11550 PF13407 Periplasmic binding protein domain SH03_RS11555 PF01791 DeoC/LacD family aldolase SH03_RS11560 PF03992 Antibiotic biosynthesis monooxygenase SH03_RS11565 PF13649 Methyltransferase domain SH03_RS11570 PF01062 Bestrophin, RFP-TM, chloride channel SH03_RS11580 PF01232 Mannitol dehydrogenase Rossmann domain SH03_RS11580 PF08125 Mannitol dehydrogenase C-terminal domain SH03_RS11585 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS11590 PF13811 Domain of unknown function (DUF4186) SH03_RS11595 PF04960 Glutaminase SH03_RS11600 PF00171 Aldehyde dehydrogenase family SH03_RS11605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS11605 PF03466 LysR substrate binding domain SH03_RS11615 PF07690 Major Facilitator Superfamily SH03_RS11620 PF01914 MarC family integral membrane protein SH03_RS11625 PF01047 MarR family SH03_RS11630 PF12833 Helix-turn-helix domain SH03_RS11635 PF13999 MarB protein SH03_RS11640 PF00892 EamA-like transporter family SH03_RS11645 PF07690 Major Facilitator Superfamily SH03_RS11655 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS11660 PF04076 Bacterial OB fold (BOF) protein SH03_RS11665 PF02464 Competence-damaged protein SH03_RS11670 PF01432 Peptidase family M3 SH03_RS11675 PF00106 short chain dehydrogenase SH03_RS11680 PF07729 FCD domain SH03_RS11680 PF00392 Bacterial regulatory proteins, gntR family SH03_RS11685 PF14001 YdfZ protein SH03_RS11690 PF08125 Mannitol dehydrogenase C-terminal domain SH03_RS11690 PF01232 Mannitol dehydrogenase Rossmann domain SH03_RS11695 PF07690 Major Facilitator Superfamily SH03_RS11695 PF00083 Sugar (and other) transporter SH03_RS11705 PF02796 Helix-turn-helix domain of resolvase SH03_RS11705 PF00239 Resolvase, N terminal domain SH03_RS11710 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH03_RS11715 PF07484 Phage Tail Collar Domain SH03_RS11715 PF03335 Phage tail fibre repeat SH03_RS11720 PF07471 Phage DNA packaging protein Nu1 SH03_RS11725 PF13132 Domain of unknown function (DUF3950) SH03_RS11730 PF07166 Protein of unknown function (DUF1398) SH03_RS11735 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system SH03_RS11745 PF00313 'Cold-shock' DNA-binding domain SH03_RS11750 PF10721 Protein of unknown function (DUF2514) SH03_RS11755 PF00959 Phage lysozyme SH03_RS11760 PF07041 Protein of unknown function (DUF1327) SH03_RS11765 PF04971 Bacteriophage P21 holin S SH03_RS11770 PF00313 'Cold-shock' DNA-binding domain SH03_RS11775 PF00313 'Cold-shock' DNA-binding domain SH03_RS11780 PF03589 Antitermination protein SH03_RS11785 PF06147 Protein of unknown function (DUF968) SH03_RS11800 PF01848 Hok/gef family SH03_RS11805 PF05016 ParE toxin of type II toxin-antitoxin system, parDE SH03_RS11810 PF04221 RelB antitoxin SH03_RS11815 PF14282 FlxA-like protein SH03_RS11830 PF01381 Helix-turn-helix SH03_RS11835 PF07151 Protein of unknown function (DUF1391) SH03_RS11850 PF05358 DicB protein SH03_RS11855 PF07358 Protein of unknown function (DUF1482) SH03_RS11870 PF12167 Arm DNA-binding domain SH03_RS11870 PF00589 Phage integrase family SH03_RS11875 PF00107 Zinc-binding dehydrogenase SH03_RS11875 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS11880 PF13378 Enolase C-terminal domain-like SH03_RS11880 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH03_RS11885 PF02694 Uncharacterised BCR, YnfA/UPF0060 family SH03_RS11890 PF06932 Protein of unknown function (DUF1283) SH03_RS11895 PF13302 Acetyltransferase (GNAT) domain SH03_RS11900 PF06788 Uncharacterised protein family (UPF0257) SH03_RS11905 PF06649 Protein of unknown function (DUF1161) SH03_RS11910 PF00384 Molybdopterin oxidoreductase SH03_RS11910 PF01568 Molydopterin dinucleotide binding domain SH03_RS11910 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS11915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS11915 PF01568 Molydopterin dinucleotide binding domain SH03_RS11915 PF00384 Molybdopterin oxidoreductase SH03_RS11920 PF12800 4Fe-4S binding domain SH03_RS11920 PF13247 4Fe-4S dicluster domain SH03_RS11925 PF04976 DMSO reductase anchor subunit (DmsC) SH03_RS11930 PF02613 Nitrate reductase delta subunit SH03_RS11935 PF00654 Voltage gated chloride channel SH03_RS11945 PF00480 ROK family SH03_RS11950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS11950 PF03466 LysR substrate binding domain SH03_RS11955 PF07690 Major Facilitator Superfamily SH03_RS11970 PF00089 Trypsin SH03_RS11975 PF00893 Small Multidrug Resistance protein SH03_RS11980 PF00893 Small Multidrug Resistance protein SH03_RS11985 PF01594 AI-2E family transporter SH03_RS11990 PF02233 NAD(P) transhydrogenase beta subunit SH03_RS11995 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SH03_RS11995 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SH03_RS11995 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch SH03_RS12000 PF07338 Protein of unknown function (DUF1471) SH03_RS12005 PF13520 Amino acid permease SH03_RS12015 PF06942 GlpM protein SH03_RS12020 PF00072 Response regulator receiver domain SH03_RS12020 PF00486 Transcriptional regulatory protein, C terminal SH03_RS12025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS12025 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS12025 PF00672 HAMP domain SH03_RS12030 PF05472 DNA replication terminus site-binding protein (Ter protein) SH03_RS12035 PF00206 Lyase SH03_RS12035 PF10415 Fumarase C C-terminus SH03_RS12040 PF05683 Fumarase C-terminus SH03_RS12040 PF05681 Fumarate hydratase (Fumerase) SH03_RS12045 PF01238 Phosphomannose isomerase type I SH03_RS12050 PF06097 Bacterial protein of unknown function (DUF945) SH03_RS12055 PF03573 outer membrane porin, OprD family SH03_RS12065 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH03_RS12065 PF00703 Glycosyl hydrolases family 2 SH03_RS12065 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH03_RS12070 PF00440 Bacterial regulatory proteins, tetR family SH03_RS12080 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH03_RS12080 PF00356 Bacterial regulatory proteins, lacI family SH03_RS12085 PF00367 phosphotransferase system, EIIB SH03_RS12085 PF02378 Phosphotransferase system, EIIC SH03_RS12090 PF00155 Aminotransferase class I and II SH03_RS12095 PF00962 Adenosine/AMP deaminase SH03_RS12100 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH03_RS12100 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH03_RS12110 PF05321 Haemolysin expression modulating protein SH03_RS12115 PF10754 Protein of unknown function (DUF2569) SH03_RS12120 PF02508 Rnf-Nqr subunit, membrane protein SH03_RS12125 PF04060 Putative Fe-S cluster SH03_RS12130 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SH03_RS12130 PF12838 4Fe-4S dicluster domain SH03_RS12130 PF13375 RnfC Barrel sandwich hybrid domain SH03_RS12130 PF10531 SLBB domain SH03_RS12135 PF03116 NQR2, RnfD, RnfE family SH03_RS12140 PF04205 FMN-binding domain SH03_RS12145 PF02508 Rnf-Nqr subunit, membrane protein SH03_RS12150 PF10576 Iron-sulfur binding domain of endonuclease III SH03_RS12150 PF00633 Helix-hairpin-helix motif SH03_RS12150 PF00730 HhH-GPD superfamily base excision DNA repair protein SH03_RS12160 PF00854 POT family SH03_RS12165 PF00043 Glutathione S-transferase, C-terminal domain SH03_RS12165 PF02798 Glutathione S-transferase, N-terminal domain SH03_RS12170 PF08543 Phosphomethylpyrimidine kinase SH03_RS12175 PF01479 S4 domain SH03_RS12175 PF00579 tRNA synthetases class I (W and Y) SH03_RS12180 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region SH03_RS12180 PF01243 Pyridoxamine 5'-phosphate oxidase SH03_RS12185 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme SH03_RS12190 PF03702 Anhydro-N-acetylmuramic acid kinase SH03_RS12195 PF05433 Glycine zipper 2TM domain SH03_RS12200 PF01047 MarR family SH03_RS12205 PF07869 Protein of unknown function (DUF1656) SH03_RS12210 PF00529 HlyD membrane-fusion protein of T1SS SH03_RS12210 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH03_RS12215 PF04632 Fusaric acid resistance protein family SH03_RS12220 PF00080 Copper/zinc superoxide dismutase (SODC) SH03_RS12225 PF00248 Aldo/keto reductase family SH03_RS12230 PF06945 Protein of unknown function (DUF1289) SH03_RS12235 PF16925 Tetracyclin repressor-like, C-terminal domain SH03_RS12235 PF00440 Bacterial regulatory proteins, tetR family SH03_RS12240 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SH03_RS12245 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH03_RS12250 PF00929 Exonuclease SH03_RS12255 PF00270 DEAD/DEAH box helicase SH03_RS12255 PF08494 DEAD/H associated SH03_RS12255 PF00271 Helicase conserved C-terminal domain SH03_RS12260 PF00462 Glutaredoxin SH03_RS12265 PF00877 NlpC/P60 family SH03_RS12270 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SH03_RS12270 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SH03_RS12275 PF07690 Major Facilitator Superfamily SH03_RS12285 PF00356 Bacterial regulatory proteins, lacI family SH03_RS12290 PF03466 LysR substrate binding domain SH03_RS12290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS12295 PF07690 Major Facilitator Superfamily SH03_RS12305 PF00677 Lumazine binding domain SH03_RS12310 PF01554 MatE SH03_RS12315 PF03212 Pertactin SH03_RS12315 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH03_RS12330 PF08803 Putative mono-oxygenase ydhR SH03_RS12335 PF13454 FAD-NAD(P)-binding SH03_RS12345 PF01292 Prokaryotic cytochrome b561 SH03_RS12350 PF13247 4Fe-4S dicluster domain SH03_RS12360 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain SH03_RS12360 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 SH03_RS12365 PF13247 4Fe-4S dicluster domain SH03_RS12365 PF12800 4Fe-4S binding domain SH03_RS12370 PF10965 Protein of unknown function (DUF2767) SH03_RS12375 PF02887 Pyruvate kinase, alpha/beta domain SH03_RS12375 PF00224 Pyruvate kinase, barrel domain SH03_RS12380 PF04728 Lipoprotein leucine-zipper SH03_RS12385 PF03734 L,D-transpeptidase catalytic domain SH03_RS12385 PF01476 LysM domain SH03_RS12385 PF17969 L,D-transpeptidase C-terminal domain SH03_RS12390 PF02657 Fe-S metabolism associated domain SH03_RS12395 PF00266 Aminotransferase class-V SH03_RS12400 PF01458 Uncharacterized protein family (UPF0051) SH03_RS12405 PF00005 ABC transporter SH03_RS12410 PF01458 Uncharacterized protein family (UPF0051) SH03_RS12415 PF01521 Iron-sulphur cluster biosynthesis SH03_RS12420 PF15930 Domain of unknown function SH03_RS12425 PF03061 Thioesterase superfamily SH03_RS12430 PF13183 4Fe-4S dicluster domain SH03_RS12430 PF01565 FAD binding domain SH03_RS12430 PF02913 FAD linked oxidases, C-terminal domain SH03_RS12435 PF01594 AI-2E family transporter SH03_RS12440 PF08965 Domain of unknown function (DUF1870) SH03_RS12445 PF07690 Major Facilitator Superfamily SH03_RS12450 PF07690 Major Facilitator Superfamily SH03_RS12455 PF08501 Shikimate dehydrogenase substrate binding domain SH03_RS12455 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SH03_RS12460 PF01487 Type I 3-dehydroquinase SH03_RS12465 PF01144 Coenzyme A transferase SH03_RS12470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH03_RS12470 PF02770 Acyl-CoA dehydrogenase, middle domain SH03_RS12470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH03_RS12475 PF02311 AraC-like ligand binding domain SH03_RS12475 PF12833 Helix-turn-helix domain SH03_RS12485 PF01012 Electron transfer flavoprotein domain SH03_RS12490 PF01012 Electron transfer flavoprotein domain SH03_RS12490 PF00766 Electron transfer flavoprotein FAD-binding domain SH03_RS12495 PF01494 FAD binding domain SH03_RS12505 PF00501 AMP-binding enzyme SH03_RS12505 PF13193 AMP-binding enzyme C-terminal domain SH03_RS12510 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SH03_RS12510 PF02896 PEP-utilising enzyme, TIM barrel domain SH03_RS12510 PF00391 PEP-utilising enzyme, mobile domain SH03_RS12520 PF03618 Kinase/pyrophosphorylase SH03_RS12525 PF00793 DAHP synthetase I family SH03_RS12530 PF10636 Hemin uptake protein hemP SH03_RS12535 PF02696 Uncharacterized ACR, YdiU/UPF0061 family SH03_RS12540 PF00563 EAL domain SH03_RS12545 PF00877 NlpC/P60 family SH03_RS12555 PF00255 Glutathione peroxidase SH03_RS12560 PF01032 FecCD transport family SH03_RS12565 PF00216 Bacterial DNA-binding protein SH03_RS12570 PF03483 B3/4 domain SH03_RS12570 PF03484 tRNA synthetase B5 domain SH03_RS12570 PF03147 Ferredoxin-fold anticodon binding domain SH03_RS12570 PF01588 Putative tRNA binding domain SH03_RS12570 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SH03_RS12575 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SH03_RS12575 PF01409 tRNA synthetases class II core domain (F) SH03_RS12585 PF00453 Ribosomal protein L20 SH03_RS12590 PF01632 Ribosomal protein L35 SH03_RS12595 PF05198 Translation initiation factor IF-3, N-terminal domain SH03_RS12595 PF00707 Translation initiation factor IF-3, C-terminal domain SH03_RS12600 PF02824 TGS domain SH03_RS12600 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SH03_RS12600 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH03_RS12600 PF03129 Anticodon binding domain SH03_RS12615 PF04338 Protein of unknown function, DUF481 SH03_RS12620 PF00294 pfkB family carbohydrate kinase SH03_RS12625 PF11080 Endoribonuclease GhoS SH03_RS12630 PF03881 Fructosamine kinase SH03_RS12635 PF14002 YniB-like protein SH03_RS12640 PF13419 Haloacid dehalogenase-like hydrolase SH03_RS12645 PF04307 LexA-binding, inner membrane-associated putative hydrolase SH03_RS12650 PF00375 Sodium:dicarboxylate symporter family SH03_RS12660 PF10729 Cell division activator CedA SH03_RS12665 PF00199 Catalase SH03_RS12665 PF18011 C-terminal domain found in long catalases SH03_RS12665 PF06628 Catalase-related immune-responsive SH03_RS12670 PF04794 YdjC-like protein SH03_RS12675 PF11975 Family 4 glycosyl hydrolase C-terminal domain SH03_RS12675 PF02056 Family 4 glycosyl hydrolase SH03_RS12680 PF12833 Helix-turn-helix domain SH03_RS12680 PF07883 Cupin domain SH03_RS12685 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SH03_RS12690 PF02378 Phosphotransferase system, EIIC SH03_RS12695 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH03_RS12700 PF04355 SmpA / OmlA family SH03_RS12705 PF02540 NAD synthase SH03_RS12720 PF05962 HutD SH03_RS12725 PF07813 LTXXQ motif family protein SH03_RS12730 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family SH03_RS12735 PF04996 Succinylarginine dihydrolase SH03_RS12740 PF00171 Aldehyde dehydrogenase family SH03_RS12745 PF04958 Arginine N-succinyltransferase beta subunit SH03_RS12750 PF00202 Aminotransferase class-III SH03_RS12755 PF03372 Endonuclease/Exonuclease/phosphatase family SH03_RS12760 PF09335 SNARE associated Golgi protein SH03_RS12770 PF09335 SNARE associated Golgi protein SH03_RS12775 PF02627 Carboxymuconolactone decarboxylase family SH03_RS12780 PF13416 Bacterial extracellular solute-binding protein SH03_RS12785 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS12790 PF00005 ABC transporter SH03_RS12795 PF00581 Rhodanese-like domain SH03_RS12800 PF01066 CDP-alcohol phosphatidyltransferase SH03_RS12805 PF00293 NUDIX domain SH03_RS12810 PF07383 Protein of unknown function (DUF1496) SH03_RS12815 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SH03_RS12815 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SH03_RS12820 PF06889 Protein of unknown function (DUF1266) SH03_RS12825 PF01131 DNA topoisomerase SH03_RS12825 PF01751 Toprim domain SH03_RS12830 PF02769 AIR synthase related protein, C-terminal domain SH03_RS12830 PF00586 AIR synthase related protein, N-terminal domain SH03_RS12840 PF00881 Nitroreductase family SH03_RS12850 PF01343 Peptidase family S49 SH03_RS12855 PF00710 Asparaginase, N-terminal SH03_RS12855 PF17763 Glutaminase/Asparaginase C-terminal domain SH03_RS12860 PF00857 Isochorismatase family SH03_RS12865 PF00083 Sugar (and other) transporter SH03_RS12870 PF00455 DeoR C terminal sensor domain SH03_RS12870 PF08220 DeoR-like helix-turn-helix domain SH03_RS12875 PF00248 Aldo/keto reductase family SH03_RS12880 PF00294 pfkB family carbohydrate kinase SH03_RS12885 PF01116 Fructose-bisphosphate aldolase class-II SH03_RS12890 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS12890 PF00107 Zinc-binding dehydrogenase SH03_RS12895 PF00083 Sugar (and other) transporter SH03_RS12900 PF00107 Zinc-binding dehydrogenase SH03_RS12900 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS12905 PF07023 Protein of unknown function (DUF1315) SH03_RS12910 PF01641 SelR domain SH03_RS12915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH03_RS12915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH03_RS12920 PF01263 Aldose 1-epimerase SH03_RS12925 PF00248 Aldo/keto reductase family SH03_RS12930 PF06629 MltA-interacting protein MipA SH03_RS12935 PF08298 PrkA AAA domain SH03_RS12935 PF06798 PrkA serine protein kinase C-terminal domain SH03_RS12940 PF04285 Protein of unknown function (DUF444) SH03_RS12945 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS12945 PF17158 Membrane-associated sensor, integral membrane domain SH03_RS12950 PF17155 Gammaproteobacterial periplasmic sensor domain SH03_RS12950 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS12955 PF04073 Aminoacyl-tRNA editing domain SH03_RS12965 PF04284 Protein of unknown function (DUF441) SH03_RS12970 PF02311 AraC-like ligand binding domain SH03_RS12970 PF12833 Helix-turn-helix domain SH03_RS12975 PF07690 Major Facilitator Superfamily SH03_RS12980 PF04343 Protein of unknown function, DUF488 SH03_RS12985 PF03891 Domain of unknown function (DUF333) SH03_RS12990 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS12990 PF13185 GAF domain SH03_RS13000 PF04226 Transglycosylase associated protein SH03_RS13005 PF08956 Domain of unknown function (DUF1869) SH03_RS13010 PF09313 Domain of unknown function (DUF1971) SH03_RS13015 PF01810 LysE type translocator SH03_RS13020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS13020 PF03466 LysR substrate binding domain SH03_RS13025 PF00180 Isocitrate/isopropylmalate dehydrogenase SH03_RS13030 PF02028 BCCT, betaine/carnitine/choline family transporter SH03_RS13035 PF00355 Rieske [2Fe-2S] domain SH03_RS13035 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SH03_RS13040 PF00970 Oxidoreductase FAD-binding domain SH03_RS13040 PF00111 2Fe-2S iron-sulfur cluster binding domain SH03_RS13040 PF00175 Oxidoreductase NAD-binding domain SH03_RS13045 PF00570 HRDC domain SH03_RS13045 PF01612 3'-5' exonuclease SH03_RS13050 PF13193 AMP-binding enzyme C-terminal domain SH03_RS13050 PF00501 AMP-binding enzyme SH03_RS13055 PF03843 Outer membrane lipoprotein Slp family SH03_RS13060 PF00814 Glycoprotease family SH03_RS13065 PF13307 Helicase C-terminal domain SH03_RS13065 PF04851 Type III restriction enzyme, res subunit SH03_RS13070 PF01042 Endoribonuclease L-PSP SH03_RS13075 PF08986 Domain of unknown function (DUF1889) SH03_RS13080 PF03701 Uncharacterised protein family (UPF0181) SH03_RS13085 PF04715 Anthranilate synthase component I, N terminal region SH03_RS13085 PF00425 chorismate binding enzyme SH03_RS13090 PF00293 NUDIX domain SH03_RS13095 PF03315 Serine dehydratase beta chain SH03_RS13095 PF03313 Serine dehydratase alpha chain SH03_RS13100 PF00563 EAL domain SH03_RS13100 PF12792 CSS motif domain associated with EAL SH03_RS13105 PF03741 Integral membrane protein TerC family SH03_RS13105 PF03471 Transporter associated domain SH03_RS13115 PF03610 PTS system fructose IIA component SH03_RS13115 PF03830 PTS system sorbose subfamily IIB component SH03_RS13120 PF03609 PTS system sorbose-specific iic component SH03_RS13125 PF03613 PTS system mannose/fructose/sorbose family IID component SH03_RS13130 PF06173 Protein of unknown function (DUF986) SH03_RS13140 PF02659 Putative manganese efflux pump SH03_RS13145 PF13847 Methyltransferase domain SH03_RS13150 PF00313 'Cold-shock' DNA-binding domain SH03_RS13155 PF10736 Protein of unknown function (DUF2627) SH03_RS13165 PF13974 YebO-like protein SH03_RS13170 PF13998 MgrB protein SH03_RS13175 PF13996 YobH-like protein SH03_RS13180 PF09339 IclR helix-turn-helix domain SH03_RS13180 PF01614 Bacterial transcriptional regulator SH03_RS13185 PF07690 Major Facilitator Superfamily SH03_RS13195 PF17804 Tail specific protease N-terminal domain SH03_RS13195 PF03572 Peptidase family S41 SH03_RS13195 PF00595 PDZ domain SH03_RS13195 PF11818 C-terminal domain of tail specific protease (DUF3340) SH03_RS13200 PF04352 ProQ/FINO family SH03_RS13200 PF17516 ProQ C-terminal domain SH03_RS13205 PF13185 GAF domain SH03_RS13210 PF04403 Paraquat-inducible protein A SH03_RS13215 PF02470 MlaD protein SH03_RS13225 PF07351 Protein of unknown function (DUF1480) SH03_RS13230 PF07358 Protein of unknown function (DUF1482) SH03_RS13235 PF00149 Calcineurin-like phosphoesterase SH03_RS13245 PF10709 Protein of unknown function (DUF2511) SH03_RS13250 PF05425 Copper resistance protein D SH03_RS13255 PF04234 CopC domain SH03_RS13260 PF06440 DNA polymerase III, theta subunit SH03_RS13265 PF00795 Carbon-nitrogen hydrolase SH03_RS13270 PF00929 Exonuclease SH03_RS13275 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain SH03_RS13275 PF00326 Prolyl oligopeptidase family SH03_RS13280 PF04391 Protein of unknown function (DUF533) SH03_RS13290 PF13995 YebF-like protein SH03_RS13295 PF07130 YebG protein SH03_RS13300 PF02222 ATP-grasp domain SH03_RS13305 PF01081 KDPG and KHG aldolase SH03_RS13310 PF00920 Dehydratase family SH03_RS13315 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SH03_RS13315 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SH03_RS13325 PF01418 Helix-turn-helix domain, rpiR family SH03_RS13325 PF01380 SIS domain SH03_RS13330 PF02887 Pyruvate kinase, alpha/beta domain SH03_RS13330 PF00224 Pyruvate kinase, barrel domain SH03_RS13335 PF03279 Bacterial lipid A biosynthesis acyltransferase SH03_RS13340 PF01551 Peptidase family M23 SH03_RS13340 PF08525 Opacity-associated protein A N-terminal motif SH03_RS13340 PF01476 LysM domain SH03_RS13345 PF01297 Zinc-uptake complex component A periplasmic SH03_RS13350 PF00005 ABC transporter SH03_RS13355 PF00950 ABC 3 transport family SH03_RS13360 PF17864 RuvB AAA lid domain SH03_RS13360 PF05496 Holliday junction DNA helicase RuvB P-loop domain SH03_RS13360 PF05491 RuvB C-terminal winged helix domain SH03_RS13365 PF01330 RuvA N terminal domain SH03_RS13365 PF07499 RuvA, C-terminal domain SH03_RS13370 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH03_RS13375 PF02075 Crossover junction endodeoxyribonuclease RuvC SH03_RS13380 PF01709 Transcriptional regulator SH03_RS13385 PF00293 NUDIX domain SH03_RS13390 PF00152 tRNA synthetases class II (D, K and N) SH03_RS13390 PF02938 GAD domain SH03_RS13390 PF01336 OB-fold nucleic acid binding domain SH03_RS13395 PF00857 Isochorismatase family SH03_RS13400 PF01904 Protein of unknown function DUF72 SH03_RS13405 PF01124 MAPEG family SH03_RS13410 PF13649 Methyltransferase domain SH03_RS13415 PF08003 Protein of unknown function (DUF1698) SH03_RS13420 PF18364 Molybdopterin oxidoreductase N-terminal domain SH03_RS13420 PF00384 Molybdopterin oxidoreductase SH03_RS13420 PF01568 Molydopterin dinucleotide binding domain SH03_RS13425 PF03264 NapC/NirT cytochrome c family, N-terminal region SH03_RS13430 PF03932 CutC family SH03_RS13435 PF06185 YecM protein SH03_RS13440 PF00750 tRNA synthetases class I (R) SH03_RS13440 PF05746 DALR anticodon binding domain SH03_RS13440 PF03485 Arginyl tRNA synthetase N terminal domain SH03_RS13445 PF07007 Lysozyme inhibitor LprI SH03_RS13450 PF06366 Flagellar protein FlhE SH03_RS13455 PF00771 FHIPEP family SH03_RS13460 PF01312 FlhB HrpN YscU SpaS Family SH03_RS13465 PF04344 Chemotaxis phosphatase, CheZ SH03_RS13470 PF00072 Response regulator receiver domain SH03_RS13475 PF00072 Response regulator receiver domain SH03_RS13475 PF01339 CheB methylesterase SH03_RS13480 PF01739 CheR methyltransferase, SAM binding domain SH03_RS13480 PF03705 CheR methyltransferase, all-alpha domain SH03_RS13485 PF02203 Tar ligand binding domain homologue SH03_RS13485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH03_RS13485 PF00672 HAMP domain SH03_RS13490 PF00672 HAMP domain SH03_RS13490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH03_RS13490 PF02203 Tar ligand binding domain homologue SH03_RS13495 PF01584 CheW-like domain SH03_RS13500 PF02895 Signal transducing histidine kinase, homodimeric domain SH03_RS13500 PF09078 CheY binding SH03_RS13500 PF01584 CheW-like domain SH03_RS13500 PF01627 Hpt domain SH03_RS13500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS13505 PF00691 OmpA family SH03_RS13505 PF13677 Membrane MotB of proton-channel complex MotA/MotB SH03_RS13510 PF01618 MotA/TolQ/ExbB proton channel family SH03_RS13515 PF05280 Flagellar transcriptional activator (FlhC) SH03_RS13520 PF05247 Flagellar transcriptional activator (FlhD) SH03_RS13525 PF00582 Universal stress protein family SH03_RS13530 PF00982 Glycosyltransferase family 20 SH03_RS13535 PF02358 Trehalose-phosphatase SH03_RS13540 PF02653 Branched-chain amino acid transport system / permease component SH03_RS13545 PF00005 ABC transporter SH03_RS13550 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH03_RS13555 PF00210 Ferritin-like domain SH03_RS13560 PF10964 Protein of unknown function (DUF2766) SH03_RS13570 PF13992 YecR-like lipoprotein SH03_RS13575 PF00210 Ferritin-like domain SH03_RS13580 PF10678 Protein of unknown function (DUF2492) SH03_RS13585 PF03222 Tryptophan/tyrosine permease family SH03_RS13590 PF02810 SEC-C motif SH03_RS13590 PF03695 Uncharacterised protein family (UPF0149) SH03_RS13610 PF01066 CDP-alcohol phosphatidyltransferase SH03_RS13615 PF02151 UvrB/uvrC motif SH03_RS13615 PF08459 UvrC Helix-hairpin-helix N-terminal SH03_RS13615 PF01541 GIY-YIG catalytic domain SH03_RS13620 PF00196 Bacterial regulatory proteins, luxR family SH03_RS13620 PF00072 Response regulator receiver domain SH03_RS13630 PF10769 Protein of unknown function (DUF2594) SH03_RS13635 PF03472 Autoinducer binding domain SH03_RS13635 PF00196 Bacterial regulatory proteins, luxR family SH03_RS13640 PF00005 ABC transporter SH03_RS13645 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS13650 PF00291 Pyridoxal-phosphate dependent enzyme SH03_RS13655 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH03_RS13660 PF02899 Phage integrase, N-terminal SAM-like domain SH03_RS13665 PF04542 Sigma-70 region 2 SH03_RS13665 PF04545 Sigma-70, region 4 SH03_RS13665 PF04539 Sigma-70 region 3 SH03_RS13670 PF00669 Bacterial flagellin N-terminal helical region SH03_RS13670 PF08884 Flagellin D3 domain SH03_RS13670 PF00700 Bacterial flagellin C-terminal helical region SH03_RS13675 PF02465 Flagellar hook-associated protein 2 N-terminus SH03_RS13675 PF07195 Flagellar hook-associated protein 2 C-terminus SH03_RS13680 PF02561 Flagellar protein FliS SH03_RS13685 PF05400 Flagellar protein FliT SH03_RS13690 PF00128 Alpha amylase, catalytic domain SH03_RS13690 PF02806 Alpha amylase, C-terminal all-beta domain SH03_RS13695 PF13987 YedD-like protein SH03_RS13700 PF04143 Sulphur transport SH03_RS13705 PF01206 Sulfurtransferase TusA SH03_RS13710 PF02586 SOS response associated peptidase (SRAP) SH03_RS13715 PF00583 Acetyltransferase (GNAT) family SH03_RS13735 PF02049 Flagellar hook-basal body complex protein FliE SH03_RS13740 PF01514 Secretory protein of YscJ/FliF family SH03_RS13740 PF08345 Flagellar M-ring protein C-terminal SH03_RS13745 PF01706 FliG C-terminal domain SH03_RS13745 PF14841 FliG middle domain SH03_RS13745 PF14842 FliG N-terminal domain SH03_RS13750 PF02108 Flagellar assembly protein FliH SH03_RS13755 PF18269 T3SS EscN ATPase C-terminal domain SH03_RS13755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH03_RS13760 PF02050 Flagellar FliJ protein SH03_RS13765 PF02120 Flagellar hook-length control protein FliK SH03_RS13770 PF03748 Flagellar basal body-associated protein FliL SH03_RS13775 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SH03_RS13775 PF02154 Flagellar motor switch protein FliM SH03_RS13780 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SH03_RS13780 PF16973 Flagellar motor switch protein FliN N-terminal SH03_RS13785 PF04347 Flagellar biosynthesis protein, FliO SH03_RS13790 PF00813 FliP family SH03_RS13795 PF01313 Bacterial export proteins, family 3 SH03_RS13800 PF01311 Bacterial export proteins, family 1 SH03_RS13805 PF00196 Bacterial regulatory proteins, luxR family SH03_RS13810 PF10781 Dextransucrase DSRB SH03_RS13815 PF10733 Protein of unknown function (DUF2525) SH03_RS13825 PF17151 Periplasmic sensor domain SH03_RS13825 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS13830 PF09926 Uncharacterized small protein (DUF2158) SH03_RS13835 PF05661 Protein of unknown function (DUF808) SH03_RS13840 PF00892 EamA-like transporter family SH03_RS13845 PF03852 DNA mismatch endonuclease Vsr SH03_RS13850 PF18284 DNA methylase N-terminal domain SH03_RS13850 PF00145 C-5 cytosine-specific DNA methylase SH03_RS13855 PF01966 HD domain SH03_RS13885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS13885 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS13890 PF00072 Response regulator receiver domain SH03_RS13890 PF00486 Transcriptional regulatory protein, C terminal SH03_RS13895 PF00576 HIUase/Transthyretin family SH03_RS13900 PF00174 Oxidoreductase molybdopterin binding domain SH03_RS13905 PF01794 Ferric reductase like transmembrane component SH03_RS13910 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SH03_RS13915 PF01292 Prokaryotic cytochrome b561 SH03_RS13930 PF06167 Glucose-regulated metallo-peptidase M90 SH03_RS13940 PF09134 Invasin, domain 3 SH03_RS13940 PF11924 Inverse autotransporter, beta-domain SH03_RS13940 PF02369 Bacterial Ig-like domain (group 1) SH03_RS13950 PF07690 Major Facilitator Superfamily SH03_RS13950 PF00083 Sugar (and other) transporter SH03_RS13955 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus SH03_RS13955 PF01048 Phosphorylase superfamily SH03_RS13960 PF01709 Transcriptional regulator SH03_RS13970 PF01554 MatE SH03_RS13980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS13980 PF03466 LysR substrate binding domain SH03_RS13985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS13985 PF03466 LysR substrate binding domain SH03_RS13995 PF03734 L,D-transpeptidase catalytic domain SH03_RS13995 PF17969 L,D-transpeptidase C-terminal domain SH03_RS14000 PF02277 Phosphoribosyltransferase SH03_RS14005 PF02654 Cobalamin-5-phosphate synthase SH03_RS14010 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase SH03_RS14020 PF05598 Transposase domain (DUF772) SH03_RS14020 PF01609 Transposase DDE domain SH03_RS14030 PF00665 Integrase core domain SH03_RS14030 PF13276 HTH-like domain SH03_RS14035 PF01527 Transposase SH03_RS14040 PF07715 TonB-dependent Receptor Plug Domain SH03_RS14040 PF00593 TonB dependent receptor SH03_RS14050 PF03797 Autotransporter beta-domain SH03_RS14050 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH03_RS14050 PF13018 Extended Signal Peptide of Type V secretion system SH03_RS14060 PF04002 RadC-like JAB domain SH03_RS14065 PF06174 Protein of unknown function (DUF987) SH03_RS14070 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH03_RS14075 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH03_RS14090 PF10662 Ethanolamine utilisation - propanediol utilisation SH03_RS14095 PF04363 Protein of unknown function (DUF496) SH03_RS14100 PF04632 Fusaric acid resistance protein family SH03_RS14105 PF06445 GyrI-like small molecule binding domain SH03_RS14110 PF00768 D-alanyl-D-alanine carboxypeptidase SH03_RS14110 PF07943 Penicillin-binding protein 5, C-terminal domain SH03_RS14115 PF08411 Exonuclease C-terminal SH03_RS14115 PF00929 Exonuclease SH03_RS14120 PF01206 Sulfurtransferase TusA SH03_RS14125 PF04143 Sulphur transport SH03_RS14130 PF13520 Amino acid permease SH03_RS14135 PF03466 LysR substrate binding domain SH03_RS14135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS14140 PF01370 NAD dependent epimerase/dehydratase family SH03_RS14145 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SH03_RS14150 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system SH03_RS14155 PF08029 HisG, C-terminal domain SH03_RS14155 PF01634 ATP phosphoribosyltransferase SH03_RS14160 PF00815 Histidinol dehydrogenase SH03_RS14165 PF00155 Aminotransferase class I and II SH03_RS14170 PF00475 Imidazoleglycerol-phosphate dehydratase SH03_RS14170 PF08645 Polynucleotide kinase 3 phosphatase SH03_RS14175 PF00117 Glutamine amidotransferase class-I SH03_RS14180 PF00977 Histidine biosynthesis protein SH03_RS14185 PF00977 Histidine biosynthesis protein SH03_RS14190 PF01502 Phosphoribosyl-AMP cyclohydrolase SH03_RS14190 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SH03_RS14195 PF02706 Chain length determinant protein SH03_RS14200 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SH03_RS14200 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SH03_RS14200 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SH03_RS14205 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SH03_RS14205 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH03_RS14210 PF01609 Transposase DDE domain SH03_RS14210 PF05598 Transposase domain (DUF772) SH03_RS14220 PF00534 Glycosyl transferases group 1 SH03_RS14225 PF00132 Bacterial transferase hexapeptide (six repeats) SH03_RS14240 PF03275 UDP-galactopyranose mutase SH03_RS14245 PF01943 Polysaccharide biosynthesis protein SH03_RS14250 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SH03_RS14255 PF00483 Nucleotidyl transferase SH03_RS14265 PF16363 GDP-mannose 4,6 dehydratase SH03_RS14270 PF00483 Nucleotidyl transferase SH03_RS14280 PF00534 Glycosyl transferases group 1 SH03_RS14280 PF13439 Glycosyltransferase Family 4 SH03_RS14285 PF04230 Polysaccharide pyruvyl transferase SH03_RS14295 PF02397 Bacterial sugar transferase SH03_RS14300 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH03_RS14300 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH03_RS14300 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH03_RS14300 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH03_RS14305 PF00483 Nucleotidyl transferase SH03_RS14305 PF01050 Mannose-6-phosphate isomerase SH03_RS14310 PF13579 Glycosyl transferase 4-like domain SH03_RS14310 PF00534 Glycosyl transferases group 1 SH03_RS14315 PF00293 NUDIX domain SH03_RS14320 PF01370 NAD dependent epimerase/dehydratase family SH03_RS14325 PF16363 GDP-mannose 4,6 dehydratase SH03_RS14330 PF00132 Bacterial transferase hexapeptide (six repeats) SH03_RS14335 PF00535 Glycosyl transferase family 2 SH03_RS14345 PF00534 Glycosyl transferases group 1 SH03_RS14345 PF13439 Glycosyltransferase Family 4 SH03_RS14350 PF00132 Bacterial transferase hexapeptide (six repeats) SH03_RS14355 PF00535 Glycosyl transferase family 2 SH03_RS14360 PF13807 G-rich domain on putative tyrosine kinase SH03_RS14360 PF02706 Chain length determinant protein SH03_RS14360 PF13614 AAA domain SH03_RS14365 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH03_RS14370 PF02563 Polysaccharide biosynthesis/export protein SH03_RS14370 PF10531 SLBB domain SH03_RS14370 PF18412 Outer-membrane lipoprotein Wza C-terminal domain SH03_RS14375 PF00571 CBS domain SH03_RS14375 PF03471 Transporter associated domain SH03_RS14375 PF03741 Integral membrane protein TerC family SH03_RS14380 PF05170 AsmA family SH03_RS14385 PF00692 dUTPase SH03_RS14390 PF00485 Phosphoribulokinase / Uridine kinase family SH03_RS14395 PF00563 EAL domain SH03_RS14395 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS14395 PF05231 MASE1 SH03_RS14395 PF13426 PAS domain SH03_RS14395 PF08447 PAS fold SH03_RS14395 PF08448 PAS fold SH03_RS14400 PF00730 HhH-GPD superfamily base excision DNA repair protein SH03_RS14400 PF06029 AlkA N-terminal domain SH03_RS14410 PF00012 Hsp70 protein SH03_RS14420 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) SH03_RS14430 PF00092 von Willebrand factor type A domain SH03_RS14435 PF13533 Biotin-lipoyl like SH03_RS14440 PF00873 AcrB/AcrD/AcrF family SH03_RS14445 PF00873 AcrB/AcrD/AcrF family SH03_RS14450 PF07690 Major Facilitator Superfamily SH03_RS14455 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS14455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS14455 PF00672 HAMP domain SH03_RS14460 PF00072 Response regulator receiver domain SH03_RS14460 PF00486 Transcriptional regulatory protein, C terminal SH03_RS14465 PF07411 Domain of unknown function (DUF1508) SH03_RS14470 PF01136 Peptidase family U32 SH03_RS14470 PF16325 Peptidase family U32 C-terminal domain SH03_RS14490 PF00781 Diacylglycerol kinase catalytic domain SH03_RS14500 PF01527 Transposase SH03_RS14505 PF13333 Integrase core domain SH03_RS14505 PF00665 Integrase core domain SH03_RS14505 PF13276 HTH-like domain SH03_RS14510 PF08220 DeoR-like helix-turn-helix domain SH03_RS14515 PF00107 Zinc-binding dehydrogenase SH03_RS14515 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS14520 PF03611 PTS system sugar-specific permease component SH03_RS14525 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH03_RS14530 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH03_RS14535 PF08013 Tagatose 6 phosphate kinase SH03_RS14540 PF01116 Fructose-bisphosphate aldolase class-II SH03_RS14545 PF01791 DeoC/LacD family aldolase SH03_RS14550 PF03825 Nucleoside H+ symporter SH03_RS14555 PF03747 ADP-ribosylglycohydrolase SH03_RS14560 PF00294 pfkB family carbohydrate kinase SH03_RS14565 PF00392 Bacterial regulatory proteins, gntR family SH03_RS14565 PF07702 UTRA domain SH03_RS14570 PF01183 Glycosyl hydrolases family 25 SH03_RS14575 PF08543 Phosphomethylpyrimidine kinase SH03_RS14580 PF02110 Hydroxyethylthiazole kinase family SH03_RS14585 PF02583 Metal-sensitive transcriptional repressor SH03_RS14590 PF03824 High-affinity nickel-transport protein SH03_RS14595 PF11776 Nickel/cobalt transporter regulator SH03_RS14600 PF00419 Fimbrial protein SH03_RS14605 PF00577 Outer membrane usher protein SH03_RS14605 PF13953 PapC C-terminal domain SH03_RS14605 PF13954 PapC N-terminal domain SH03_RS14610 PF02753 Pili assembly chaperone PapD, C-terminal domain SH03_RS14610 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH03_RS14615 PF00419 Fimbrial protein SH03_RS14625 PF10836 Protein of unknown function (DUF2574) SH03_RS14630 PF10609 NUBPL iron-transfer P-loop NTPase SH03_RS14635 PF09334 tRNA synthetases class I (M) SH03_RS14635 PF01588 Putative tRNA binding domain SH03_RS14640 PF05406 WGR domain SH03_RS14650 PF13569 Domain of unknown function (DUF4132) SH03_RS14660 PF07728 AAA domain (dynein-related subfamily) SH03_RS14670 PF05762 VWA domain containing CoxE-like protein SH03_RS14675 PF04434 SWIM zinc finger SH03_RS14680 PF06998 Protein of unknown function (DUF1307) SH03_RS14685 PF07308 Protein of unknown function (DUF1456) SH03_RS14690 PF00072 Response regulator receiver domain SH03_RS14690 PF04397 LytTr DNA-binding domain SH03_RS14695 PF07694 5TMR of 5TMR-LYT SH03_RS14695 PF06580 Histidine kinase SH03_RS14700 PF13411 MerR HTH family regulatory protein SH03_RS14710 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS14715 PF00005 ABC transporter SH03_RS14720 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS14725 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH03_RS14730 PF01915 Glycosyl hydrolase family 3 C-terminal domain SH03_RS14730 PF14310 Fibronectin type III-like domain SH03_RS14730 PF00933 Glycosyl hydrolase family 3 N terminal domain SH03_RS14735 PF01565 FAD binding domain SH03_RS14735 PF09330 D-lactate dehydrogenase, membrane binding SH03_RS14740 PF00768 D-alanyl-D-alanine carboxypeptidase SH03_RS14745 PF04893 Yip1 domain SH03_RS14750 PF09335 SNARE associated Golgi protein SH03_RS14770 PF01207 Dihydrouridine synthase (Dus) SH03_RS14775 PF03788 LrgA family SH03_RS14780 PF04172 LrgB-like family SH03_RS14785 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region SH03_RS14785 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SH03_RS14790 PF02698 DUF218 domain SH03_RS14795 PF10808 Protein of unknown function (DUF2542) SH03_RS14800 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH03_RS14800 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH03_RS14805 PF01180 Dihydroorotate dehydrogenase SH03_RS14810 PF02653 Branched-chain amino acid transport system / permease component SH03_RS14815 PF03400 IS1 transposase SH03_RS14825 PF13407 Periplasmic binding protein domain SH03_RS14830 PF00356 Bacterial regulatory proteins, lacI family SH03_RS14840 PF04235 Protein of unknown function (DUF418) SH03_RS14845 PF01227 GTP cyclohydrolase I SH03_RS14855 PF00756 Putative esterase SH03_RS14860 PF00593 TonB dependent receptor SH03_RS14860 PF07715 TonB-dependent Receptor Plug Domain SH03_RS14865 PF00324 Amino acid permease SH03_RS14870 PF03466 LysR substrate binding domain SH03_RS14870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS14875 PF03601 Conserved hypothetical protein 698 SH03_RS14880 PF01261 Xylose isomerase-like TIM barrel SH03_RS14885 PF00294 pfkB family carbohydrate kinase SH03_RS14890 PF01773 Na+ dependent nucleoside transporter N-terminus SH03_RS14890 PF07662 Na+ dependent nucleoside transporter C-terminus SH03_RS14895 PF01156 Inosine-uridine preferring nucleoside hydrolase SH03_RS14900 PF00027 Cyclic nucleotide-binding domain SH03_RS14905 PF01773 Na+ dependent nucleoside transporter N-terminus SH03_RS14905 PF07662 Na+ dependent nucleoside transporter C-terminus SH03_RS14910 PF04227 Indigoidine synthase A like protein SH03_RS14915 PF00294 pfkB family carbohydrate kinase SH03_RS14920 PF02378 Phosphotransferase system, EIIC SH03_RS14920 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH03_RS14925 PF00294 pfkB family carbohydrate kinase SH03_RS14930 PF00381 PTS HPr component phosphorylation site SH03_RS14930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH03_RS14935 PF07690 Major Facilitator Superfamily SH03_RS14940 PF03692 Putative zinc- or iron-chelating domain SH03_RS14945 PF09285 Elongation factor P, C-terminal SH03_RS14945 PF08207 Elongation factor P (EF-P) KOW-like domain SH03_RS14945 PF01132 Elongation factor P (EF-P) OB domain SH03_RS14950 PF01232 Mannitol dehydrogenase Rossmann domain SH03_RS14950 PF08125 Mannitol dehydrogenase C-terminal domain SH03_RS14955 PF07683 Cobalamin synthesis protein cobW C-terminal domain SH03_RS14955 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH03_RS14960 PF01569 PAP2 superfamily SH03_RS14965 PF00877 NlpC/P60 family SH03_RS14970 PF00563 EAL domain SH03_RS14970 PF12792 CSS motif domain associated with EAL SH03_RS14975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH03_RS14980 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS14985 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS14985 PF12911 N-terminal TM domain of oligopeptide transport permease C SH03_RS14990 PF00005 ABC transporter SH03_RS14990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH03_RS14995 PF13989 YejG-like protein SH03_RS15000 PF07690 Major Facilitator Superfamily SH03_RS15005 PF01479 S4 domain SH03_RS15005 PF00849 RNA pseudouridylate synthase SH03_RS15010 PF04851 Type III restriction enzyme, res subunit SH03_RS15010 PF00271 Helicase conserved C-terminal domain SH03_RS15015 PF01386 Ribosomal L25p family SH03_RS15020 PF04245 37-kD nucleoid-associated bacterial protein SH03_RS15025 PF07208 Protein of unknown function (DUF1414) SH03_RS15030 PF11893 Domain of unknown function (DUF3413) SH03_RS15030 PF00884 Sulfatase SH03_RS15040 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH03_RS15040 PF03212 Pertactin SH03_RS15040 PF03797 Autotransporter beta-domain SH03_RS15045 PF05598 Transposase domain (DUF772) SH03_RS15045 PF01609 Transposase DDE domain SH03_RS15055 PF00072 Response regulator receiver domain SH03_RS15055 PF00196 Bacterial regulatory proteins, luxR family SH03_RS15060 PF03918 Cytochrome C biogenesis protein SH03_RS15065 PF08534 Redoxin SH03_RS15070 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SH03_RS15070 PF01578 Cytochrome C assembly protein SH03_RS15075 PF03100 CcmE SH03_RS15080 PF04995 Heme exporter protein D (CcmD) SH03_RS15085 PF01578 Cytochrome C assembly protein SH03_RS15090 PF03379 CcmB protein SH03_RS15095 PF00005 ABC transporter SH03_RS15100 PF03264 NapC/NirT cytochrome c family, N-terminal region SH03_RS15105 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) SH03_RS15110 PF12801 4Fe-4S binding domain SH03_RS15110 PF13237 4Fe-4S dicluster domain SH03_RS15115 PF12800 4Fe-4S binding domain SH03_RS15115 PF12838 4Fe-4S dicluster domain SH03_RS15120 PF00384 Molybdopterin oxidoreductase SH03_RS15120 PF01568 Molydopterin dinucleotide binding domain SH03_RS15120 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS15125 PF03927 NapD protein SH03_RS15130 PF13187 4Fe-4S dicluster domain SH03_RS15130 PF00037 4Fe-4S binding domain SH03_RS15130 PF12800 4Fe-4S binding domain SH03_RS15140 PF03974 Ecotin SH03_RS15145 PF06039 Malate:quinone oxidoreductase (Mqo) SH03_RS15150 PF00005 ABC transporter SH03_RS15155 PF13532 2OG-Fe(II) oxygenase superfamily SH03_RS15160 PF02805 Metal binding domain of Ada SH03_RS15160 PF12833 Helix-turn-helix domain SH03_RS15160 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SH03_RS15160 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH03_RS15165 PF02424 ApbE family SH03_RS15170 PF00267 Gram-negative porin SH03_RS15185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS15185 PF16359 RcsD-ABL domain SH03_RS15185 PF01627 Hpt domain SH03_RS15190 PF00072 Response regulator receiver domain SH03_RS15190 PF00196 Bacterial regulatory proteins, luxR family SH03_RS15195 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS15195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS15195 PF09456 RcsC Alpha-Beta-Loop (ABL) SH03_RS15195 PF00072 Response regulator receiver domain SH03_RS15200 PF00989 PAS fold SH03_RS15200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS15200 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS15205 PF00158 Sigma-54 interaction domain SH03_RS15205 PF00072 Response regulator receiver domain SH03_RS15205 PF02954 Bacterial regulatory protein, Fis family SH03_RS15210 PF01144 Coenzyme A transferase SH03_RS15215 PF01144 Coenzyme A transferase SH03_RS15220 PF02667 Short chain fatty acid transporter SH03_RS15225 PF00108 Thiolase, N-terminal domain SH03_RS15225 PF02803 Thiolase, C-terminal domain SH03_RS15230 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) SH03_RS15235 PF08486 Stage II sporulation protein SH03_RS15235 PF10062 Predicted secreted protein (DUF2300) SH03_RS15240 PF00207 Alpha-2-macroglobulin family SH03_RS15240 PF01835 MG2 domain SH03_RS15240 PF07703 Alpha-2-macroglobulin bait region domain SH03_RS15245 PF07703 Alpha-2-macroglobulin bait region domain SH03_RS15245 PF00207 Alpha-2-macroglobulin family SH03_RS15245 PF01835 MG2 domain SH03_RS15250 PF06672 Protein of unknown function (DUF1175) SH03_RS15255 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) SH03_RS15260 PF00521 DNA gyrase/topoisomerase IV, subunit A SH03_RS15260 PF03989 DNA gyrase C-terminal domain, beta-propeller SH03_RS15270 PF12951 Passenger-associated-transport-repeat SH03_RS15270 PF03797 Autotransporter beta-domain SH03_RS15270 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat SH03_RS15280 PF03477 ATP cone domain SH03_RS15280 PF00317 Ribonucleotide reductase, all-alpha domain SH03_RS15280 PF02867 Ribonucleotide reductase, barrel domain SH03_RS15285 PF00268 Ribonucleotide reductase, small chain SH03_RS15290 PF00111 2Fe-2S iron-sulfur cluster binding domain SH03_RS15305 PF03009 Glycerophosphoryl diester phosphodiesterase family SH03_RS15310 PF07690 Major Facilitator Superfamily SH03_RS15315 PF04324 BFD-like [2Fe-2S] binding domain SH03_RS15315 PF01266 FAD dependent oxidoreductase SH03_RS15320 PF00890 FAD binding domain SH03_RS15325 PF13183 4Fe-4S dicluster domain SH03_RS15325 PF02754 Cysteine-rich domain SH03_RS15330 PF04754 Putative transposase, YhgA-like SH03_RS15340 PF03328 HpcH/HpaI aldolase/citrate lyase family SH03_RS15345 PF07690 Major Facilitator Superfamily SH03_RS15355 PF09339 IclR helix-turn-helix domain SH03_RS15355 PF01614 Bacterial transcriptional regulator SH03_RS15360 PF00994 Probable molybdopterin binding domain SH03_RS15365 PF07437 YfaZ precursor SH03_RS15370 PF00293 NUDIX domain SH03_RS15375 PF00300 Histidine phosphatase superfamily (branch 1) SH03_RS15380 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SH03_RS15385 PF00535 Glycosyl transferase family 2 SH03_RS15390 PF01370 NAD dependent epimerase/dehydratase family SH03_RS15390 PF02911 Formyl transferase, C-terminal domain SH03_RS15390 PF00551 Formyl transferase SH03_RS15395 PF01522 Polysaccharide deacetylase SH03_RS15400 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase SH03_RS15405 PF00892 EamA-like transporter family SH03_RS15420 PF00501 AMP-binding enzyme SH03_RS15420 PF13193 AMP-binding enzyme C-terminal domain SH03_RS15425 PF13378 Enolase C-terminal domain-like SH03_RS15430 PF00378 Enoyl-CoA hydratase/isomerase SH03_RS15435 PF12697 Alpha/beta hydrolase family SH03_RS15440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH03_RS15440 PF16582 Middle domain of thiamine pyrophosphate SH03_RS15440 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH03_RS15445 PF00425 chorismate binding enzyme SH03_RS15450 PF05957 Bacterial protein of unknown function (DUF883) SH03_RS15455 PF13673 Acetyltransferase (GNAT) domain SH03_RS15460 PF12706 Beta-lactamase superfamily domain SH03_RS15465 PF02902 Ulp1 protease family, C-terminal catalytic domain SH03_RS15470 PF12450 von Willebrand factor SH03_RS15470 PF00092 von Willebrand factor type A domain SH03_RS15470 PF12034 Domain of unknown function (DUF3520) SH03_RS15475 PF04389 Peptidase family M28 SH03_RS15480 PF08974 Domain of unknown function (DUF1877) SH03_RS15500 PF00361 Proton-conducting membrane transporter SH03_RS15505 PF00361 Proton-conducting membrane transporter SH03_RS15510 PF00361 Proton-conducting membrane transporter SH03_RS15510 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH03_RS15515 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SH03_RS15520 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SH03_RS15525 PF12838 4Fe-4S dicluster domain SH03_RS15530 PF00146 NADH dehydrogenase SH03_RS15535 PF01568 Molydopterin dinucleotide binding domain SH03_RS15535 PF00384 Molybdopterin oxidoreductase SH03_RS15535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS15535 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SH03_RS15540 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SH03_RS15540 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SH03_RS15540 PF10531 SLBB domain SH03_RS15550 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH03_RS15550 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH03_RS15555 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH03_RS15560 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SH03_RS15565 PF03466 LysR substrate binding domain SH03_RS15565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS15570 PF00155 Aminotransferase class I and II SH03_RS15580 PF03600 Citrate transporter SH03_RS15580 PF02080 TrkA-C domain SH03_RS15585 PF13419 Haloacid dehalogenase-like hydrolase SH03_RS15590 PF03887 YfbU domain SH03_RS15595 PF04217 Protein of unknown function, DUF412 SH03_RS15605 PF00871 Acetokinase family SH03_RS15610 PF07085 DRTGG domain SH03_RS15610 PF01515 Phosphate acetyl/butaryl transferase SH03_RS15615 PF03606 C4-dicarboxylate anaerobic carrier SH03_RS15620 PF00293 NUDIX domain SH03_RS15625 PF12850 Calcineurin-like phosphoesterase superfamily domain SH03_RS15630 PF02798 Glutathione S-transferase, N-terminal domain SH03_RS15630 PF14834 Glutathione S-transferase, C-terminal domain SH03_RS15635 PF02798 Glutathione S-transferase, N-terminal domain SH03_RS15635 PF00043 Glutathione S-transferase, C-terminal domain SH03_RS15640 PF02152 Dihydroneopterin aldolase SH03_RS15645 PF08338 Domain of unknown function (DUF1731) SH03_RS15645 PF01370 NAD dependent epimerase/dehydratase family SH03_RS15650 PF04754 Putative transposase, YhgA-like SH03_RS15655 PF00005 ABC transporter SH03_RS15660 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS15665 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS15670 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH03_RS15675 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH03_RS15680 PF02441 Flavoprotein SH03_RS15685 PF00156 Phosphoribosyl transferase domain SH03_RS15690 PF02674 Colicin V production protein SH03_RS15695 PF05036 Sporulation related domain SH03_RS15700 PF02875 Mur ligase family, glutamate ligase domain SH03_RS15700 PF08245 Mur ligase middle domain SH03_RS15705 PF17848 Acetyl-coA carboxylase zinc finger domain SH03_RS15705 PF01039 Carboxyl transferase domain SH03_RS15710 PF09335 SNARE associated Golgi protein SH03_RS15715 PF01416 tRNA pseudouridine synthase SH03_RS15720 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH03_RS15720 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH03_RS15725 PF11890 Domain of unknown function (DUF3410) SH03_RS15725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH03_RS15725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH03_RS15735 PF07690 Major Facilitator Superfamily SH03_RS15740 PF02801 Beta-ketoacyl synthase, C-terminal domain SH03_RS15740 PF00109 Beta-ketoacyl synthase, N-terminal domain SH03_RS15745 PF01266 FAD dependent oxidoreductase SH03_RS15745 PF05430 S-adenosyl-L-methionine-dependent methyltransferase SH03_RS15750 PF08891 YfcL protein SH03_RS15755 PF04315 Elongation factor P hydroxylase SH03_RS15760 PF01925 Sulfite exporter TauE/SafE SH03_RS15765 PF03411 Penicillin-insensitive murein endopeptidase SH03_RS15770 PF01264 Chorismate synthase SH03_RS15775 PF05175 Methyltransferase small domain SH03_RS15780 PF01713 Smr domain SH03_RS15785 PF11245 Protein of unknown function (DUF2544) SH03_RS15790 PF00419 Fimbrial protein SH03_RS15795 PF00419 Fimbrial protein SH03_RS15800 PF00419 Fimbrial protein SH03_RS15805 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH03_RS15805 PF02753 Pili assembly chaperone PapD, C-terminal domain SH03_RS15815 PF00419 Fimbrial protein SH03_RS15820 PF00300 Histidine phosphatase superfamily (branch 1) SH03_RS15825 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH03_RS15825 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH03_RS15825 PF00378 Enoyl-CoA hydratase/isomerase SH03_RS15830 PF02803 Thiolase, C-terminal domain SH03_RS15830 PF00108 Thiolase, N-terminal domain SH03_RS15835 PF04175 Protein of unknown function (DUF406) SH03_RS15840 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) SH03_RS15850 PF04333 MlaA lipoprotein SH03_RS15855 PF01226 Formate/nitrite transporter SH03_RS15865 PF14659 Phage integrase, N-terminal SAM-like domain SH03_RS15865 PF00589 Phage integrase family SH03_RS15865 PF13356 Arm DNA-binding domain SH03_RS15870 PF04138 GtrA-like protein SH03_RS15875 PF00535 Glycosyl transferase family 2 SH03_RS15885 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH03_RS15890 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH03_RS15900 PF05869 DNA N-6-adenine-methyltransferase (Dam) SH03_RS15905 PF06069 PerC transcriptional activator SH03_RS15925 PF10065 Uncharacterized conserved protein (DUF2303) SH03_RS15950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS15950 PF03466 LysR substrate binding domain SH03_RS15955 PF02447 GntP family permease SH03_RS15960 PF00291 Pyridoxal-phosphate dependent enzyme SH03_RS15965 PF07690 Major Facilitator Superfamily SH03_RS15970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH03_RS15970 PF00529 HlyD membrane-fusion protein of T1SS SH03_RS15975 PF00072 Response regulator receiver domain SH03_RS15975 PF00196 Bacterial regulatory proteins, luxR family SH03_RS15980 PF01627 Hpt domain SH03_RS15980 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS15980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS15980 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH03_RS15980 PF00072 Response regulator receiver domain SH03_RS15985 PF02515 CoA-transferase family III SH03_RS15990 PF03547 Membrane transport protein SH03_RS15995 PF00205 Thiamine pyrophosphate enzyme, central domain SH03_RS15995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH03_RS15995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH03_RS16000 PF02515 CoA-transferase family III SH03_RS16005 PF10938 YfdX protein SH03_RS16020 PF10810 Protein of unknown function (DUF2545) SH03_RS16025 PF03279 Bacterial lipid A biosynthesis acyltransferase SH03_RS16030 PF00155 Aminotransferase class I and II SH03_RS16035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS16035 PF06580 Histidine kinase SH03_RS16035 PF07694 5TMR of 5TMR-LYT SH03_RS16040 PF00072 Response regulator receiver domain SH03_RS16040 PF04397 LytTr DNA-binding domain SH03_RS16045 PF12833 Helix-turn-helix domain SH03_RS16050 PF00391 PEP-utilising enzyme, mobile domain SH03_RS16050 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH03_RS16050 PF05524 PEP-utilising enzyme, N-terminal SH03_RS16050 PF00381 PTS HPr component phosphorylation site SH03_RS16050 PF02896 PEP-utilising enzyme, TIM barrel domain SH03_RS16055 PF05343 M42 glutamyl aminopeptidase SH03_RS16060 PF01321 Creatinase/Prolidase N-terminal domain SH03_RS16060 PF00557 Metallopeptidase family M24 SH03_RS16065 PF02378 Phosphotransferase system, EIIC SH03_RS16070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH03_RS16075 PF02685 Glucokinase SH03_RS16080 PF00654 Voltage gated chloride channel SH03_RS16085 PF10697 Protein of unknown function (DUF2502) SH03_RS16095 PF01566 Natural resistance-associated macrophage protein SH03_RS16100 PF07662 Na+ dependent nucleoside transporter C-terminus SH03_RS16100 PF07670 Nucleoside recognition SH03_RS16100 PF01773 Na+ dependent nucleoside transporter N-terminus SH03_RS16105 PF01609 Transposase DDE domain SH03_RS16110 PF05231 MASE1 SH03_RS16110 PF00563 EAL domain SH03_RS16125 PF07037 Putative transcription regulator (DUF1323) SH03_RS16130 PF07037 Putative transcription regulator (DUF1323) SH03_RS16135 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH03_RS16160 PF03466 LysR substrate binding domain SH03_RS16160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS16170 PF03825 Nucleoside H+ symporter SH03_RS16175 PF01048 Phosphorylase superfamily SH03_RS16180 PF03502 Nucleoside-specific channel-forming protein, Tsx SH03_RS16185 PF03466 LysR substrate binding domain SH03_RS16185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS16190 PF13593 SBF-like CPA transporter family (DUF4137) SH03_RS16195 PF12843 Putative quorum-sensing-regulated virulence factor SH03_RS16200 PF00533 BRCA1 C Terminus (BRCT) domain SH03_RS16200 PF01653 NAD-dependent DNA ligase adenylation domain SH03_RS16200 PF03120 NAD-dependent DNA ligase OB-fold domain SH03_RS16200 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SH03_RS16200 PF12826 Helix-hairpin-helix motif SH03_RS16205 PF04354 ZipA, C-terminal FtsZ-binding domain SH03_RS16215 PF00291 Pyridoxal-phosphate dependent enzyme SH03_RS16220 PF00381 PTS HPr component phosphorylation site SH03_RS16225 PF05524 PEP-utilising enzyme, N-terminal SH03_RS16225 PF02896 PEP-utilising enzyme, TIM barrel domain SH03_RS16225 PF00391 PEP-utilising enzyme, mobile domain SH03_RS16230 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH03_RS16235 PF08543 Phosphomethylpyrimidine kinase SH03_RS16240 PF17263 Family of unknown function (DUF5329) SH03_RS16245 PF05406 WGR domain SH03_RS16250 PF00291 Pyridoxal-phosphate dependent enzyme SH03_RS16255 PF00005 ABC transporter SH03_RS16260 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS16265 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS16280 PF01418 Helix-turn-helix domain, rpiR family SH03_RS16280 PF01380 SIS domain SH03_RS16285 PF01380 SIS domain SH03_RS16290 PF02378 Phosphotransferase system, EIIC SH03_RS16290 PF00367 phosphotransferase system, EIIB SH03_RS16295 PF00144 Beta-lactamase SH03_RS16300 PF04261 Dyp-type peroxidase family SH03_RS16305 PF06572 Protein of unknown function (DUF1131) SH03_RS16310 PF11143 Protein of unknown function (DUF2919) SH03_RS16315 PF00583 Acetyltransferase (GNAT) family SH03_RS16320 PF01520 N-acetylmuramoyl-L-alanine amidase SH03_RS16325 PF01218 Coproporphyrinogen III oxidase SH03_RS16330 PF12833 Helix-turn-helix domain SH03_RS16335 PF00936 BMC domain SH03_RS16335 PF16365 Ethanolamine utilization protein EutK C-terminus SH03_RS16340 PF00936 BMC domain SH03_RS16345 PF05985 Ethanolamine ammonia-lyase light chain (EutC) SH03_RS16350 PF06751 Ethanolamine ammonia lyase large subunit (EutB) SH03_RS16355 PF06277 Ethanolamine utilisation protein EutA SH03_RS16360 PF04346 Ethanolamine utilisation protein, EutH SH03_RS16365 PF00465 Iron-containing alcohol dehydrogenase SH03_RS16375 PF00171 Aldehyde dehydrogenase family SH03_RS16380 PF03319 Ethanolamine utilisation protein EutN/carboxysome SH03_RS16385 PF00936 BMC domain SH03_RS16390 PF01515 Phosphate acetyl/butaryl transferase SH03_RS16395 PF01923 Cobalamin adenosyltransferase SH03_RS16400 PF06249 Ethanolamine utilisation protein EutQ SH03_RS16405 PF10662 Ethanolamine utilisation - propanediol utilisation SH03_RS16410 PF00936 BMC domain SH03_RS16415 PF01515 Phosphate acetyl/butaryl transferase SH03_RS16415 PF00390 Malic enzyme, N-terminal domain SH03_RS16415 PF03949 Malic enzyme, NAD binding domain SH03_RS16420 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH03_RS16425 PF00456 Transketolase, thiamine diphosphate binding domain SH03_RS16425 PF02780 Transketolase, C-terminal domain SH03_RS16425 PF02779 Transketolase, pyrimidine binding domain SH03_RS16430 PF06674 Protein of unknown function (DUF1176) SH03_RS16435 PF00293 NUDIX domain SH03_RS16440 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH03_RS16440 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH03_RS16440 PF13247 4Fe-4S dicluster domain SH03_RS16445 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SH03_RS16445 PF07730 Histidine kinase SH03_RS16445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS16445 PF00672 HAMP domain SH03_RS16450 PF00873 AcrB/AcrD/AcrF family SH03_RS16460 PF03960 ArsC family SH03_RS16465 PF07687 Peptidase dimerisation domain SH03_RS16465 PF01546 Peptidase family M20/M25/M40 SH03_RS16470 PF13980 Uncharacterised protein family (UPF0370) SH03_RS16475 PF02230 Phospholipase/Carboxylesterase SH03_RS16480 PF05127 Helicase SH03_RS16480 PF13718 GNAT acetyltransferase 2 SH03_RS16480 PF08351 Domain of unknown function (DUF1726) SH03_RS16480 PF17176 tRNA-binding domain SH03_RS16485 PF04228 Putative neutral zinc metallopeptidase SH03_RS16490 PF01259 SAICAR synthetase SH03_RS16500 PF06804 NlpB/DapX lipoprotein SH03_RS16505 PF00701 Dihydrodipicolinate synthetase family SH03_RS16510 PF01842 ACT domain SH03_RS16515 PF00578 AhpC/TSA family SH03_RS16520 PF00037 4Fe-4S binding domain SH03_RS16520 PF12798 4Fe-4S binding domain SH03_RS16525 PF00361 Proton-conducting membrane transporter SH03_RS16530 PF00146 NADH dehydrogenase SH03_RS16535 PF00361 Proton-conducting membrane transporter SH03_RS16535 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH03_RS16540 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SH03_RS16545 PF00361 Proton-conducting membrane transporter SH03_RS16545 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH03_RS16550 PF00374 Nickel-dependent hydrogenase SH03_RS16550 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH03_RS16550 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH03_RS16555 PF12838 4Fe-4S dicluster domain SH03_RS16560 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH03_RS16565 PF07450 Formate hydrogenlyase maturation protein HycH SH03_RS16570 PF00158 Sigma-54 interaction domain SH03_RS16570 PF01590 GAF domain SH03_RS16575 PF01226 Formate/nitrite transporter SH03_RS16580 PF01594 AI-2E family transporter SH03_RS16585 PF01435 Peptidase family M48 SH03_RS16590 PF03960 ArsC family SH03_RS16595 PF00308 Bacterial dnaA protein SH03_RS16600 PF00860 Permease family SH03_RS16610 PF02769 AIR synthase related protein, C-terminal domain SH03_RS16610 PF00586 AIR synthase related protein, N-terminal domain SH03_RS16615 PF00551 Formyl transferase SH03_RS16620 PF13089 Polyphosphate kinase N-terminal domain SH03_RS16620 PF17941 Polyphosphate kinase C-terminal domain 1 SH03_RS16620 PF02503 Polyphosphate kinase middle domain SH03_RS16620 PF13090 Polyphosphate kinase C-terminal domain 2 SH03_RS16625 PF02541 Ppx/GppA phosphatase family SH03_RS16630 PF00563 EAL domain SH03_RS16630 PF05231 MASE1 SH03_RS16640 PF11119 Protein of unknown function (DUF2633) SH03_RS16645 PF05433 Glycine zipper 2TM domain SH03_RS16650 PF17358 Family of unknown function (DUF5384) SH03_RS16655 PF00117 Glutamine amidotransferase class-I SH03_RS16655 PF00958 GMP synthase C terminal domain SH03_RS16655 PF02540 NAD synthase SH03_RS16660 PF00571 CBS domain SH03_RS16660 PF00478 IMP dehydrogenase / GMP reductase domain SH03_RS16665 PF02601 Exonuclease VII, large subunit SH03_RS16665 PF13742 OB-fold nucleic acid binding domain SH03_RS16670 PF07191 zinc-ribbons SH03_RS16675 PF01926 50S ribosome-binding GTPase SH03_RS16675 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SH03_RS16680 PF13360 PQQ-like domain SH03_RS16685 PF09976 Tetratricopeptide repeat-like domain SH03_RS16690 PF03129 Anticodon binding domain SH03_RS16690 PF13393 Histidyl-tRNA synthetase SH03_RS16695 PF04551 GcpE protein SH03_RS16700 PF13464 Domain of unknown function (DUF4115) SH03_RS16705 PF04055 Radical SAM superfamily SH03_RS16710 PF00334 Nucleoside diphosphate kinase SH03_RS16715 PF00912 Transglycosylase SH03_RS16715 PF00905 Penicillin binding protein transpeptidase domain SH03_RS16715 PF06832 Penicillin-Binding Protein C-terminus Family SH03_RS16720 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain SH03_RS16720 PF01835 MG2 domain SH03_RS16720 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain SH03_RS16720 PF07678 A-macroglobulin TED domain SH03_RS16720 PF07703 Alpha-2-macroglobulin bait region domain SH03_RS16720 PF17962 Bacterial macroglobulin domain 6 SH03_RS16720 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain SH03_RS16720 PF00207 Alpha-2-macroglobulin family SH03_RS16720 PF11974 Bacterial alpha-2-macroglobulin MG3 domain SH03_RS16725 PF00581 Rhodanese-like domain SH03_RS16730 PF07179 SseB protein N-terminal domain SH03_RS16730 PF14581 SseB protein C-terminal domain SH03_RS16735 PF12404 Peptidase SH03_RS16735 PF00883 Cytosol aminopeptidase family, catalytic domain SH03_RS16740 PF04384 Iron-sulphur cluster assembly SH03_RS16745 PF00111 2Fe-2S iron-sulfur cluster binding domain SH03_RS16750 PF00012 Hsp70 protein SH03_RS16755 PF07743 HSCB C-terminal oligomerisation domain SH03_RS16760 PF01521 Iron-sulphur cluster biosynthesis SH03_RS16765 PF01592 NifU-like N terminal domain SH03_RS16770 PF00266 Aminotransferase class-V SH03_RS16775 PF02082 Transcriptional regulator SH03_RS16780 PF00588 SpoU rRNA Methylase family SH03_RS16785 PF00459 Inositol monophosphatase family SH03_RS16790 PF12146 Serine aminopeptidase, S33 SH03_RS16795 PF00874 PRD domain SH03_RS16800 PF12832 MFS_1 like family SH03_RS16805 PF03466 LysR substrate binding domain SH03_RS16805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS16810 PF00355 Rieske [2Fe-2S] domain SH03_RS16810 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SH03_RS16815 PF00866 Ring hydroxylating beta subunit SH03_RS16820 PF00355 Rieske [2Fe-2S] domain SH03_RS16825 PF00106 short chain dehydrogenase SH03_RS16830 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH03_RS16830 PF14759 Reductase C-terminal SH03_RS16835 PF07681 DoxX SH03_RS16840 PF01263 Aldose 1-epimerase SH03_RS16845 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS16845 PF00107 Zinc-binding dehydrogenase SH03_RS16850 PF02653 Branched-chain amino acid transport system / permease component SH03_RS16855 PF00005 ABC transporter SH03_RS16860 PF13407 Periplasmic binding protein domain SH03_RS16865 PF17128 Domain of unknown function (DUF5107) SH03_RS16865 PF13181 Tetratricopeptide repeat SH03_RS16870 PF00480 ROK family SH03_RS16875 PF00464 Serine hydroxymethyltransferase SH03_RS16880 PF00970 Oxidoreductase FAD-binding domain SH03_RS16880 PF00175 Oxidoreductase NAD-binding domain SH03_RS16880 PF00042 Globin SH03_RS16885 PF00543 Nitrogen regulatory protein P-II SH03_RS16890 PF00158 Sigma-54 interaction domain SH03_RS16890 PF00072 Response regulator receiver domain SH03_RS16895 PF13942 YfhG lipoprotein SH03_RS16900 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS16900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS16905 PF02769 AIR synthase related protein, C-terminal domain SH03_RS16905 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal SH03_RS16905 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SH03_RS16910 PF01464 Transglycosylase SLT domain SH03_RS16910 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH03_RS16915 PF14437 MafB19-like deaminase SH03_RS16925 PF01380 SIS domain SH03_RS16925 PF01418 Helix-turn-helix domain, rpiR family SH03_RS16930 PF12838 4Fe-4S dicluster domain SH03_RS16950 PF01648 4'-phosphopantetheinyl transferase superfamily SH03_RS16955 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SH03_RS16960 PF02565 Recombination protein O C terminal SH03_RS16960 PF11967 Recombination protein O N terminal SH03_RS16965 PF07650 KH domain SH03_RS16965 PF01926 50S ribosome-binding GTPase SH03_RS16970 PF00035 Double-stranded RNA binding motif SH03_RS16970 PF14622 Ribonuclease-III-like SH03_RS16975 PF10502 Signal peptidase, peptidase S26 SH03_RS16980 PF03144 Elongation factor Tu domain 2 SH03_RS16980 PF06421 GTP-binding protein LepA C-terminus SH03_RS16980 PF00679 Elongation factor G C-terminus SH03_RS16980 PF00009 Elongation factor Tu GTP binding domain SH03_RS16990 PF17188 MucB/RseB C-terminal domain SH03_RS16990 PF03888 MucB/RseB N-terminal domain SH03_RS16995 PF03873 Anti sigma-E protein RseA, C-terminal domain SH03_RS16995 PF03872 Anti sigma-E protein RseA, N-terminal domain SH03_RS17000 PF08281 Sigma-70, region 4 SH03_RS17000 PF04542 Sigma-70 region 2 SH03_RS17010 PF02910 Fumarate reductase flavoprotein C-term SH03_RS17010 PF00890 FAD binding domain SH03_RS17015 PF05175 Methyltransferase small domain SH03_RS17020 PF00270 DEAD/DEAH box helicase SH03_RS17020 PF00271 Helicase conserved C-terminal domain SH03_RS17030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS17030 PF03466 LysR substrate binding domain SH03_RS17035 PF01810 LysE type translocator SH03_RS17040 PF01228 Glycine radical SH03_RS17045 PF03167 Uracil DNA glycosylase superfamily SH03_RS17050 PF00588 SpoU rRNA Methylase family SH03_RS17050 PF08032 RNA 2'-O ribose methyltransferase substrate binding SH03_RS17060 PF00085 Thioredoxin SH03_RS17065 PF03942 DTW domain SH03_RS17070 PF13607 Succinyl-CoA ligase like flavodoxin domain SH03_RS17070 PF00583 Acetyltransferase (GNAT) family SH03_RS17070 PF13380 CoA binding domain SH03_RS17075 PF13091 PLD-like domain SH03_RS17080 PF10043 Predicted periplasmic lipoprotein (DUF2279) SH03_RS17085 PF00083 Sugar (and other) transporter SH03_RS17115 PF10431 C-terminal, D2-small domain, of ClpB protein SH03_RS17115 PF02861 Clp amino terminal domain, pathogenicity island component SH03_RS17115 PF17871 AAA lid domain SH03_RS17115 PF07724 AAA domain (Cdc48 subfamily) SH03_RS17115 PF00004 ATPase family associated with various cellular activities (AAA) SH03_RS17120 PF02578 Multi-copper polyphenol oxidoreductase laccase SH03_RS17125 PF01479 S4 domain SH03_RS17125 PF00849 RNA pseudouridylate synthase SH03_RS17130 PF13525 Outer membrane lipoprotein SH03_RS17140 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SH03_RS17145 PF01817 Chorismate mutase type II SH03_RS17145 PF00800 Prephenate dehydratase SH03_RS17150 PF02153 Prephenate dehydrogenase SH03_RS17150 PF01817 Chorismate mutase type II SH03_RS17155 PF00793 DAHP synthetase I family SH03_RS17160 PF10973 Protein of unknown function (DUF2799) SH03_RS17165 PF13689 YfiR/HmsC-like SH03_RS17170 PF17152 Periplasmic sensor domain SH03_RS17170 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS17175 PF00691 OmpA family SH03_RS17180 PF01245 Ribosomal protein L19 SH03_RS17185 PF01746 tRNA (Guanine-1)-methyltransferase SH03_RS17190 PF01782 RimM N-terminal domain SH03_RS17190 PF05239 PRC-barrel domain SH03_RS17195 PF00886 Ribosomal protein S16 SH03_RS17200 PF02978 Signal peptide binding domain SH03_RS17200 PF00448 SRP54-type protein, GTPase domain SH03_RS17200 PF02881 SRP54-type protein, helical bundle domain SH03_RS17205 PF01578 Cytochrome C assembly protein SH03_RS17210 PF00571 CBS domain SH03_RS17210 PF03471 Transporter associated domain SH03_RS17210 PF01595 Cyclin M transmembrane N-terminal domain SH03_RS17215 PF01025 GrpE SH03_RS17225 PF01513 ATP-NAD kinase SH03_RS17230 PF02463 RecF/RecN/SMC N terminal domain SH03_RS17235 PF04355 SmpA / OmlA family SH03_RS17240 PF03658 RnfH family Ubiquitin SH03_RS17245 PF03364 Polyketide cyclase / dehydrase and lipid transport SH03_RS17250 PF01668 SmpB protein SH03_RS17255 PF00589 Phage integrase family SH03_RS17255 PF13356 Arm DNA-binding domain SH03_RS17265 PF05930 Prophage CP4-57 regulatory protein (AlpA) SH03_RS17270 PF13148 Protein of unknown function (DUF3987) SH03_RS17280 PF00271 Helicase conserved C-terminal domain SH03_RS17285 PF14130 Domain of unknown function (DUF4297) SH03_RS17285 PF08878 Domain of unknown function (DUF1837) SH03_RS17290 PF07510 Protein of unknown function (DUF1524) SH03_RS17295 PF15935 RNase LS, bacterial toxin SH03_RS17300 PF15933 Antitoxin to bacterial toxin RNase LS or RnlA SH03_RS17305 PF01926 50S ribosome-binding GTPase SH03_RS17310 PF06067 Domain of unknown function (DUF932) SH03_RS17315 PF13280 WYL domain SH03_RS17315 PF08220 DeoR-like helix-turn-helix domain SH03_RS17350 PF03230 Antirestriction protein SH03_RS17355 PF04002 RadC-like JAB domain SH03_RS17360 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH03_RS17365 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH03_RS17370 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH03_RS17370 PF03212 Pertactin SH03_RS17370 PF03797 Autotransporter beta-domain SH03_RS17385 PF17621 Family of unknown function (DUF5508) SH03_RS17390 PF17612 Family of unknown function (DUF5507) SH03_RS17405 PF00128 Alpha amylase, catalytic domain SH03_RS17410 PF00128 Alpha amylase, catalytic domain SH03_RS17415 PF00128 Alpha amylase, catalytic domain SH03_RS17420 PF08943 CsiD SH03_RS17425 PF01266 FAD dependent oxidoreductase SH03_RS17430 PF00171 Aldehyde dehydrogenase family SH03_RS17435 PF00202 Aminotransferase class-III SH03_RS17440 PF00324 Amino acid permease SH03_RS17445 PF00392 Bacterial regulatory proteins, gntR family SH03_RS17445 PF07729 FCD domain SH03_RS17450 PF01476 LysM domain SH03_RS17450 PF04972 BON domain SH03_RS17455 PF01679 Proteolipid membrane potential modulator SH03_RS17460 PF01022 Bacterial regulatory protein, arsR family SH03_RS17465 PF11127 Protein of unknown function (DUF2892) SH03_RS17465 PF00581 Rhodanese-like domain SH03_RS17470 PF00816 H-NS histone family SH03_RS17475 PF06610 L-alanine exporter SH03_RS17480 PF09400 Protein of unknown function (DUF2002) SH03_RS17485 PF05957 Bacterial protein of unknown function (DUF883) SH03_RS17490 PF00462 Glutaredoxin SH03_RS17495 PF07972 NrdI Flavodoxin like SH03_RS17500 PF02867 Ribonucleotide reductase, barrel domain SH03_RS17500 PF00317 Ribonucleotide reductase, all-alpha domain SH03_RS17500 PF08343 Ribonucleotide reductase N-terminal SH03_RS17505 PF00268 Ribonucleotide reductase, small chain SH03_RS17510 PF00571 CBS domain SH03_RS17510 PF00005 ABC transporter SH03_RS17515 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS17520 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH03_RS17530 PF03591 AzlC protein SH03_RS17535 PF05437 Branched-chain amino acid transport protein (AzlD) SH03_RS17540 PF01047 MarR family SH03_RS17545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH03_RS17545 PF00529 HlyD membrane-fusion protein of T1SS SH03_RS17550 PF07690 Major Facilitator Superfamily SH03_RS17555 PF02664 S-Ribosylhomocysteinase (LuxS) SH03_RS17560 PF04262 Glutamate-cysteine ligase SH03_RS17565 PF09335 SNARE associated Golgi protein SH03_RS17570 PF13419 Haloacid dehalogenase-like hydrolase SH03_RS17605 PF02599 Global regulator protein family SH03_RS17610 PF02272 DHHA1 domain SH03_RS17610 PF01411 tRNA synthetases class II (A) SH03_RS17610 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SH03_RS17620 PF02631 RecX family SH03_RS17635 PF00302 Chloramphenicol acetyltransferase SH03_RS17640 PF02464 Competence-damaged protein SH03_RS17645 PF13406 Transglycosylase SLT domain SH03_RS17650 PF03608 PTS system enzyme II sorbitol-specific factor SH03_RS17655 PF07663 Sorbitol phosphotransferase enzyme II C-terminus SH03_RS17655 PF03612 Sorbitol phosphotransferase enzyme II N-terminus SH03_RS17660 PF03829 PTS system glucitol/sorbitol-specific IIA component SH03_RS17665 PF00106 short chain dehydrogenase SH03_RS17670 PF06923 Glucitol operon activator protein (GutM) SH03_RS17675 PF08220 DeoR-like helix-turn-helix domain SH03_RS17675 PF00455 DeoR C terminal sensor domain SH03_RS17680 PF00571 CBS domain SH03_RS17680 PF01380 SIS domain SH03_RS17685 PF01590 GAF domain SH03_RS17685 PF00158 Sigma-54 interaction domain SH03_RS17690 PF00258 Flavodoxin SH03_RS17690 PF00753 Metallo-beta-lactamase superfamily SH03_RS17690 PF00301 Rubredoxin SH03_RS17695 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH03_RS17695 PF18113 Rubredoxin binding C-terminal domain SH03_RS17700 PF07503 HypF finger SH03_RS17700 PF01300 Telomere recombination SH03_RS17700 PF17788 HypF Kae1-like domain SH03_RS17700 PF00708 Acylphosphatase SH03_RS17705 PF13247 4Fe-4S dicluster domain SH03_RS17705 PF12800 4Fe-4S binding domain SH03_RS17710 PF00356 Bacterial regulatory proteins, lacI family SH03_RS17715 PF00367 phosphotransferase system, EIIB SH03_RS17715 PF02378 Phosphotransferase system, EIIC SH03_RS17720 PF00232 Glycosyl hydrolase family 1 SH03_RS17725 PF01750 Hydrogenase maturation protease SH03_RS17730 PF07450 Formate hydrogenlyase maturation protein HycH SH03_RS17735 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH03_RS17740 PF12838 4Fe-4S dicluster domain SH03_RS17745 PF00374 Nickel-dependent hydrogenase SH03_RS17745 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH03_RS17745 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH03_RS17750 PF00146 NADH dehydrogenase SH03_RS17755 PF00361 Proton-conducting membrane transporter SH03_RS17760 PF13247 4Fe-4S dicluster domain SH03_RS17770 PF11046 Transcriptional repressor of hyc and hyp operons SH03_RS17775 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SH03_RS17780 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH03_RS17785 PF01455 HupF/HypC family SH03_RS17790 PF01924 Hydrogenase formation hypA family SH03_RS17795 PF00586 AIR synthase related protein, N-terminal domain SH03_RS17795 PF02769 AIR synthase related protein, C-terminal domain SH03_RS17800 PF01590 GAF domain SH03_RS17800 PF00158 Sigma-54 interaction domain SH03_RS17805 PF11756 Nitrous oxide-stimulated promoter SH03_RS17810 PF01624 MutS domain I SH03_RS17810 PF05188 MutS domain II SH03_RS17810 PF05192 MutS domain III SH03_RS17810 PF05190 MutS family domain IV SH03_RS17810 PF00488 MutS domain V SH03_RS17815 PF00149 Calcineurin-like phosphoesterase SH03_RS17820 PF00455 DeoR C terminal sensor domain SH03_RS17820 PF08220 DeoR-like helix-turn-helix domain SH03_RS17825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH03_RS17825 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH03_RS17830 PF07005 Sugar-binding N-terminal domain SH03_RS17830 PF17042 Nucleotide-binding C-terminal domain SH03_RS17835 PF00596 Class II Aldolase and Adducin N-terminal domain SH03_RS17840 PF01261 Xylose isomerase-like TIM barrel SH03_RS17845 PF02447 GntP family permease SH03_RS17850 PF04545 Sigma-70, region 4 SH03_RS17850 PF04539 Sigma-70 region 3 SH03_RS17850 PF04542 Sigma-70 region 2 SH03_RS17850 PF00140 Sigma-70 factor, region 1.2 SH03_RS17855 PF01476 LysM domain SH03_RS17855 PF01551 Peptidase family M23 SH03_RS17865 PF01975 Survival protein SurE SH03_RS17870 PF01142 tRNA pseudouridine synthase D (TruD) SH03_RS17875 PF02542 YgbB family SH03_RS17880 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SH03_RS17885 PF04977 Septum formation initiator SH03_RS17890 PF12084 Protein of unknown function (DUF3561) SH03_RS17900 PF00009 Elongation factor Tu GTP binding domain SH03_RS17905 PF01507 Phosphoadenosine phosphosulfate reductase family SH03_RS17910 PF04389 Peptidase family M28 SH03_RS17915 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) SH03_RS17920 PF01867 CRISPR associated protein Cas1 SH03_RS17925 PF08798 CRISPR associated protein SH03_RS17930 PF09704 CRISPR-associated protein (Cas_Cas5) SH03_RS17935 PF09344 CT1975-like protein SH03_RS17940 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) SH03_RS17945 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) SH03_RS17950 PF18019 HD domain SH03_RS17950 PF00270 DEAD/DEAH box helicase SH03_RS17950 PF00271 Helicase conserved C-terminal domain SH03_RS17955 PF01507 Phosphoadenosine phosphosulfate reductase family SH03_RS17960 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SH03_RS17960 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SH03_RS17965 PF00667 FAD binding domain SH03_RS17965 PF00258 Flavodoxin SH03_RS17965 PF00175 Oxidoreductase NAD-binding domain SH03_RS17970 PF01242 6-pyruvoyl tetrahydropterin synthase SH03_RS17975 PF01266 FAD dependent oxidoreductase SH03_RS17985 PF04309 Glycerol-3-phosphate responsive antiterminator SH03_RS17990 PF01012 Electron transfer flavoprotein domain SH03_RS17990 PF00766 Electron transfer flavoprotein FAD-binding domain SH03_RS17995 PF01012 Electron transfer flavoprotein domain SH03_RS18000 PF00083 Sugar (and other) transporter SH03_RS18005 PF02913 FAD linked oxidases, C-terminal domain SH03_RS18005 PF01565 FAD binding domain SH03_RS18015 PF07690 Major Facilitator Superfamily SH03_RS18020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH03_RS18020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH03_RS18025 PF04055 Radical SAM superfamily SH03_RS18035 PF04536 TPM domain SH03_RS18040 PF03952 Enolase, N-terminal domain SH03_RS18040 PF00113 Enolase, C-terminal TIM barrel domain SH03_RS18045 PF00117 Glutamine amidotransferase class-I SH03_RS18045 PF06418 CTP synthase N-terminus SH03_RS18050 PF03819 MazG nucleotide pyrophosphohydrolase domain SH03_RS18055 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SH03_RS18060 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SH03_RS18065 PF04607 Region found in RelA / SpoT proteins SH03_RS18065 PF13291 ACT domain SH03_RS18065 PF02824 TGS domain SH03_RS18070 PF01938 TRAM domain SH03_RS18070 PF05958 tRNA (Uracil-5-)-methyltransferase SH03_RS18075 PF00072 Response regulator receiver domain SH03_RS18075 PF01627 Hpt domain SH03_RS18075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS18075 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS18075 PF00672 HAMP domain SH03_RS18075 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SH03_RS18080 PF13378 Enolase C-terminal domain-like SH03_RS18085 PF13378 Enolase C-terminal domain-like SH03_RS18085 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH03_RS18090 PF07690 Major Facilitator Superfamily SH03_RS18095 PF00258 Flavodoxin SH03_RS18100 PF00849 RNA pseudouridylate synthase SH03_RS18105 PF04287 tRNA pseudouridine synthase C SH03_RS18115 PF07348 Syd protein (SUKH-2) SH03_RS18120 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term SH03_RS18120 PF14489 QueF-like protein SH03_RS18125 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases SH03_RS18125 PF11892 Domain of unknown function (DUF3412) SH03_RS18125 PF03641 Possible lysine decarboxylase SH03_RS18135 PF03313 Serine dehydratase alpha chain SH03_RS18135 PF03315 Serine dehydratase beta chain SH03_RS18140 PF01367 5'-3' exonuclease, C-terminal SAM fold SH03_RS18140 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SH03_RS18145 PF00465 Iron-containing alcohol dehydrogenase SH03_RS18150 PF00596 Class II Aldolase and Adducin N-terminal domain SH03_RS18155 PF07690 Major Facilitator Superfamily SH03_RS18160 PF07881 L-fucose isomerase, first N-terminal domain SH03_RS18160 PF02952 L-fucose isomerase, C-terminal domain SH03_RS18160 PF07882 L-fucose isomerase, second N-terminal domain SH03_RS18165 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH03_RS18165 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH03_RS18170 PF05025 RbsD / FucU transport protein family SH03_RS18175 PF00455 DeoR C terminal sensor domain SH03_RS18175 PF08220 DeoR-like helix-turn-helix domain SH03_RS18180 PF18125 RlmM ferredoxin-like domain SH03_RS18180 PF01728 FtsJ-like methyltransferase SH03_RS18185 PF04241 Protein of unknown function (DUF423) SH03_RS18190 PF03466 LysR substrate binding domain SH03_RS18190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS18195 PF06004 Bacterial protein of unknown function (DUF903) SH03_RS18200 PF00266 Aminotransferase class-V SH03_RS18205 PF02657 Fe-S metabolism associated domain SH03_RS18210 PF00899 ThiF family SH03_RS18215 PF03562 MltA specific insert domain SH03_RS18215 PF06725 3D domain SH03_RS18235 PF01520 N-acetylmuramoyl-L-alanine amidase SH03_RS18235 PF11741 AMIN domain SH03_RS18240 PF00696 Amino acid kinase family SH03_RS18240 PF00583 Acetyltransferase (GNAT) family SH03_RS18250 PF12705 PD-(D/E)XK nuclease superfamily SH03_RS18250 PF00580 UvrD/REP helicase N-terminal domain SH03_RS18250 PF13361 UvrD-like helicase C-terminal domain SH03_RS18255 PF05193 Peptidase M16 inactive domain SH03_RS18255 PF00675 Insulinase (Peptidase family M16) SH03_RS18255 PF16187 Middle or third domain of peptidase_M16 SH03_RS18260 PF17946 RecC C-terminal domain SH03_RS18265 PF12528 Type II secretion prepilin peptidase dependent protein C SH03_RS18265 PF07963 Prokaryotic N-terminal methylation motif SH03_RS18270 PF10713 Protein of unknown function (DUF2509) SH03_RS18275 PF07963 Prokaryotic N-terminal methylation motif SH03_RS18280 PF07963 Prokaryotic N-terminal methylation motif SH03_RS18285 PF00303 Thymidylate synthase SH03_RS18290 PF01790 Prolipoprotein diacylglyceryl transferase SH03_RS18295 PF00391 PEP-utilising enzyme, mobile domain SH03_RS18295 PF05524 PEP-utilising enzyme, N-terminal SH03_RS18295 PF02896 PEP-utilising enzyme, TIM barrel domain SH03_RS18295 PF01590 GAF domain SH03_RS18300 PF00293 NUDIX domain SH03_RS18315 PF02976 DNA mismatch repair enzyme MutH SH03_RS18320 PF03741 Integral membrane protein TerC family SH03_RS18325 PF06004 Bacterial protein of unknown function (DUF903) SH03_RS18330 PF00248 Aldo/keto reductase family SH03_RS18335 PF07690 Major Facilitator Superfamily SH03_RS18340 PF00501 AMP-binding enzyme SH03_RS18340 PF01553 Acyltransferase SH03_RS18345 PF00356 Bacterial regulatory proteins, lacI family SH03_RS18350 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SH03_RS18350 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SH03_RS18355 PF03466 LysR substrate binding domain SH03_RS18355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS18360 PF01177 Asp/Glu/Hydantoin racemase SH03_RS18365 PF00083 Sugar (and other) transporter SH03_RS18375 PF04962 KduI/IolB family SH03_RS18380 PF00108 Thiolase, N-terminal domain SH03_RS18380 PF02803 Thiolase, C-terminal domain SH03_RS18385 PF03222 Tryptophan/tyrosine permease family SH03_RS18390 PF00196 Bacterial regulatory proteins, luxR family SH03_RS18395 PF00486 Transcriptional regulatory protein, C terminal SH03_RS18415 PF07720 Tetratricopeptide repeat SH03_RS18420 PF00486 Transcriptional regulatory protein, C terminal SH03_RS18430 PF01464 Transglycosylase SLT domain SH03_RS18435 PF00196 Bacterial regulatory proteins, luxR family SH03_RS18435 PF00072 Response regulator receiver domain SH03_RS18440 PF00196 Bacterial regulatory proteins, luxR family SH03_RS18440 PF00072 Response regulator receiver domain SH03_RS18455 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) SH03_RS18460 PF13276 HTH-like domain SH03_RS18460 PF00665 Integrase core domain SH03_RS18465 PF01527 Transposase SH03_RS18485 PF01476 LysM domain SH03_RS18485 PF01551 Peptidase family M23 SH03_RS18490 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH03_RS18490 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH03_RS18495 PF03450 CO dehydrogenase flavoprotein C-terminal domain SH03_RS18495 PF00941 FAD binding domain in molybdopterin dehydrogenase SH03_RS18500 PF01799 [2Fe-2S] binding domain SH03_RS18500 PF00111 2Fe-2S iron-sulfur cluster binding domain SH03_RS18505 PF00158 Sigma-54 interaction domain SH03_RS18505 PF13188 PAS domain SH03_RS18505 PF02954 Bacterial regulatory protein, Fis family SH03_RS18510 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH03_RS18510 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH03_RS18515 PF00291 Pyridoxal-phosphate dependent enzyme SH03_RS18520 PF07687 Peptidase dimerisation domain SH03_RS18520 PF01546 Peptidase family M20/M25/M40 SH03_RS18525 PF01979 Amidohydrolase family SH03_RS18530 PF00696 Amino acid kinase family SH03_RS18535 PF13478 XdhC Rossmann domain SH03_RS18535 PF02625 XdhC and CoxI family SH03_RS18545 PF12804 MobA-like NTP transferase domain SH03_RS18550 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH03_RS18550 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH03_RS18555 PF01979 Amidohydrolase family SH03_RS18560 PF00941 FAD binding domain in molybdopterin dehydrogenase SH03_RS18565 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH03_RS18565 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH03_RS18565 PF01799 [2Fe-2S] binding domain SH03_RS18570 PF00860 Permease family SH03_RS18575 PF01979 Amidohydrolase family SH03_RS18580 PF00860 Permease family SH03_RS18585 PF13247 4Fe-4S dicluster domain SH03_RS18590 PF13247 4Fe-4S dicluster domain SH03_RS18590 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH03_RS18590 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH03_RS18600 PF00860 Permease family SH03_RS18610 PF00293 NUDIX domain SH03_RS18615 PF01336 OB-fold nucleic acid binding domain SH03_RS18615 PF00152 tRNA synthetases class II (D, K and N) SH03_RS18620 PF00472 RF-1 domain SH03_RS18620 PF03462 PCRF domain SH03_RS18625 PF01368 DHH family SH03_RS18625 PF17768 RecJ OB domain SH03_RS18625 PF02272 DHHA1 domain SH03_RS18630 PF13098 Thioredoxin-like domain SH03_RS18630 PF10411 Disulfide bond isomerase protein N-terminus SH03_RS18635 PF02899 Phage integrase, N-terminal SAM-like domain SH03_RS18635 PF00589 Phage integrase family SH03_RS18640 PF00258 Flavodoxin SH03_RS18645 PF07254 Membrane-bound toxin component of toxin-antitoxin system SH03_RS18650 PF03937 Flavinator of succinate dehydrogenase SH03_RS18655 PF01571 Aminomethyltransferase folate-binding domain SH03_RS18660 PF03006 Haemolysin-III related SH03_RS18665 PF04266 ASCH domain SH03_RS18670 PF00232 Glycosyl hydrolase family 1 SH03_RS18680 PF02347 Glycine cleavage system P-protein SH03_RS18685 PF01597 Glycine cleavage H-protein SH03_RS18690 PF01571 Aminomethyltransferase folate-binding domain SH03_RS18690 PF08669 Glycine cleavage T-protein C-terminal barrel domain SH03_RS18695 PF01494 FAD binding domain SH03_RS18700 PF01494 FAD binding domain SH03_RS18705 PF05195 Aminopeptidase P, N-terminal domain SH03_RS18705 PF00557 Metallopeptidase family M24 SH03_RS18710 PF03695 Uncharacterised protein family (UPF0149) SH03_RS18715 PF05164 Cell division protein ZapA SH03_RS18720 PF01812 5-formyltetrahydrofolate cyclo-ligase family SH03_RS18725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH03_RS18725 PF01842 ACT domain SH03_RS18725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH03_RS18730 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SH03_RS18735 PF03466 LysR substrate binding domain SH03_RS18740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS18740 PF03466 LysR substrate binding domain SH03_RS18745 PF01642 Methylmalonyl-CoA mutase SH03_RS18745 PF02310 B12 binding domain SH03_RS18755 PF00378 Enoyl-CoA hydratase/isomerase SH03_RS18760 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain SH03_RS18760 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain SH03_RS18765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS18765 PF03466 LysR substrate binding domain SH03_RS18770 PF04402 Protein of unknown function (DUF541) SH03_RS18775 PF01810 LysE type translocator SH03_RS18780 PF05552 Conserved TM helix SH03_RS18780 PF00924 Mechanosensitive ion channel SH03_RS18785 PF01116 Fructose-bisphosphate aldolase class-II SH03_RS18790 PF00162 Phosphoglycerate kinase SH03_RS18795 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH03_RS18795 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH03_RS18805 PF05068 Mannitol repressor SH03_RS18810 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded SH03_RS18815 PF00107 Zinc-binding dehydrogenase SH03_RS18815 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS18820 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH03_RS18820 PF02378 Phosphotransferase system, EIIC SH03_RS18825 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH03_RS18830 PF00456 Transketolase, thiamine diphosphate binding domain SH03_RS18830 PF02779 Transketolase, pyrimidine binding domain SH03_RS18830 PF02780 Transketolase, C-terminal domain SH03_RS18835 PF01435 Peptidase family M48 SH03_RS18840 PF00491 Arginase family SH03_RS18845 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SH03_RS18845 PF17944 Arginine decarboxylase C-terminal helical extension SH03_RS18845 PF17810 Arginine decarboxylase helical bundle domain SH03_RS18850 PF11036 Virulence promoting factor SH03_RS18855 PF17430 Uncharacterized YqgC-like SH03_RS18865 PF00438 S-adenosylmethionine synthetase, N-terminal domain SH03_RS18865 PF02773 S-adenosylmethionine synthetase, C-terminal domain SH03_RS18865 PF02772 S-adenosylmethionine synthetase, central domain SH03_RS18875 PF17283 SprT-like zinc ribbon domain SH03_RS18875 PF10263 SprT-like family SH03_RS18880 PF04231 Endonuclease I SH03_RS18885 PF04452 RNA methyltransferase SH03_RS18890 PF02951 Prokaryotic glutathione synthetase, N-terminal domain SH03_RS18890 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain SH03_RS18895 PF02622 Uncharacterized ACR, COG1678 SH03_RS18900 PF03652 Holliday junction resolvase SH03_RS18905 PF00437 Type II/IV secretion system protein SH03_RS18910 PF01168 Alanine racemase, N-terminal domain SH03_RS18915 PF02325 YGGT family SH03_RS18920 PF02594 Uncharacterised ACR, YggU family COG1872 SH03_RS18925 PF01725 Ham1 family SH03_RS18930 PF06969 HemN C-terminal domain SH03_RS18930 PF04055 Radical SAM superfamily SH03_RS18935 PF06717 Protein of unknown function (DUF1202) SH03_RS18940 PF00710 Asparaginase, N-terminal SH03_RS18940 PF17763 Glutaminase/Asparaginase C-terminal domain SH03_RS18945 PF11101 Protein of unknown function (DUF2884) SH03_RS18955 PF04320 Protein with unknown function (DUF469) SH03_RS18960 PF02390 Putative methyltransferase SH03_RS18965 PF10576 Iron-sulfur binding domain of endonuclease III SH03_RS18965 PF00633 Helix-hairpin-helix motif SH03_RS18965 PF00730 HhH-GPD superfamily base excision DNA repair protein SH03_RS18965 PF14815 NUDIX domain SH03_RS18970 PF04362 Bacterial Fe(2+) trafficking SH03_RS18975 PF01464 Transglycosylase SLT domain SH03_RS18975 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain SH03_RS18980 PF03825 Nucleoside H+ symporter SH03_RS18985 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH03_RS18985 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH03_RS18985 PF01276 Orn/Lys/Arg decarboxylase, major domain SH03_RS18990 PF04474 Protein of unknown function (DUF554) SH03_RS19000 PF04612 Type II secretion system (T2SS), protein M SH03_RS19005 PF12693 GspL periplasmic domain SH03_RS19010 PF11356 Type II secretion system protein C SH03_RS19015 PF16549 Type II secretion system (T2SS) pilotin, S protein SH03_RS19020 PF01478 Type IV leader peptidase family SH03_RS19020 PF06750 Bacterial Peptidase A24 N-terminal domain SH03_RS19025 PF13322 Domain of unknown function (DUF4092) SH03_RS19025 PF17291 N-terminal domain of M60-like peptidases SH03_RS19025 PF13402 Peptidase M60, enhancin and enhancin-like SH03_RS19035 PF02652 L-lactate permease SH03_RS19040 PF01274 Malate synthase SH03_RS19045 PF03928 Haem-degrading SH03_RS19050 PF02754 Cysteine-rich domain SH03_RS19050 PF13183 4Fe-4S dicluster domain SH03_RS19055 PF01565 FAD binding domain SH03_RS19060 PF02913 FAD linked oxidases, C-terminal domain SH03_RS19060 PF01565 FAD binding domain SH03_RS19065 PF07729 FCD domain SH03_RS19065 PF00392 Bacterial regulatory proteins, gntR family SH03_RS19075 PF05598 Transposase domain (DUF772) SH03_RS19075 PF01609 Transposase DDE domain SH03_RS19080 PF01943 Polysaccharide biosynthesis protein SH03_RS19100 PF01384 Phosphate transporter family SH03_RS19105 PF03738 Glutathionylspermidine synthase preATP-grasp SH03_RS19105 PF05257 CHAP domain SH03_RS19110 PF02798 Glutathione S-transferase, N-terminal domain SH03_RS19115 PF01455 HupF/HypC family SH03_RS19120 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SH03_RS19125 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE SH03_RS19130 PF01750 Hydrogenase maturation protease SH03_RS19135 PF00374 Nickel-dependent hydrogenase SH03_RS19140 PF03916 Polysulphide reductase, NrfD SH03_RS19145 PF13247 4Fe-4S dicluster domain SH03_RS19150 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SH03_RS19150 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH03_RS19160 PF11115 Protein of unknown function (DUF2623) SH03_RS19170 PF00248 Aldo/keto reductase family SH03_RS19175 PF03350 Uncharacterized protein family, UPF0114 SH03_RS19185 PF02472 Biopolymer transport protein ExbD/TolR SH03_RS19190 PF01618 MotA/TolQ/ExbB proton channel family SH03_RS19200 PF01053 Cys/Met metabolism PLP-dependent enzyme SH03_RS19205 PF09335 SNARE associated Golgi protein SH03_RS19210 PF12833 Helix-turn-helix domain SH03_RS19210 PF06719 AraC-type transcriptional regulator N-terminus SH03_RS19220 PF00465 Iron-containing alcohol dehydrogenase SH03_RS19225 PF00248 Aldo/keto reductase family SH03_RS19230 PF12883 Protein of unknown function (DUF3828) SH03_RS19235 PF04728 Lipoprotein leucine-zipper SH03_RS19240 PF08497 Radical SAM N-terminal SH03_RS19240 PF11842 Domain of unknown function (DUF3362) SH03_RS19240 PF04055 Radical SAM superfamily SH03_RS19245 PF00394 Multicopper oxidase SH03_RS19245 PF07732 Multicopper oxidase SH03_RS19245 PF07731 Multicopper oxidase SH03_RS19250 PF01553 Acyltransferase SH03_RS19255 PF03989 DNA gyrase C-terminal domain, beta-propeller SH03_RS19255 PF00521 DNA gyrase/topoisomerase IV, subunit A SH03_RS19260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH03_RS19265 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA SH03_RS19270 PF15723 Motility quorum-sensing regulator, toxin of MqsA SH03_RS19275 PF06445 GyrI-like small molecule binding domain SH03_RS19280 PF04076 Bacterial OB fold (BOF) protein SH03_RS19285 PF00486 Transcriptional regulatory protein, C terminal SH03_RS19285 PF00072 Response regulator receiver domain SH03_RS19290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS19290 PF08521 Two-component sensor kinase N-terminal SH03_RS19290 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS19295 PF10840 Protein of unknown function (DUF2645) SH03_RS19300 PF02525 Flavodoxin-like fold SH03_RS19305 PF03992 Antibiotic biosynthesis monooxygenase SH03_RS19310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS19310 PF01751 Toprim domain SH03_RS19310 PF00204 DNA gyrase B SH03_RS19310 PF00986 DNA gyrase B subunit, carboxyl terminus SH03_RS19315 PF05728 Uncharacterised protein family (UPF0227) SH03_RS19320 PF00149 Calcineurin-like phosphoesterase SH03_RS19325 PF06853 Protein of unknown function (DUF1249) SH03_RS19330 PF00293 NUDIX domain SH03_RS19335 PF02321 Outer membrane efflux protein SH03_RS19345 PF06693 Protein of unknown function (DUF1190) SH03_RS19350 PF03738 Glutathionylspermidine synthase preATP-grasp SH03_RS19355 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SH03_RS19360 PF02535 ZIP Zinc transporter SH03_RS19370 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SH03_RS19375 PF04380 Membrane fusogenic activity SH03_RS19380 PF00419 Fimbrial protein SH03_RS19385 PF01527 Transposase SH03_RS19390 PF13276 HTH-like domain SH03_RS19390 PF00665 Integrase core domain SH03_RS19395 PF13953 PapC C-terminal domain SH03_RS19395 PF00577 Outer membrane usher protein SH03_RS19395 PF13954 PapC N-terminal domain SH03_RS19400 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH03_RS19400 PF02753 Pili assembly chaperone PapD, C-terminal domain SH03_RS19410 PF08971 Glycogen synthesis protein SH03_RS19415 PF07290 Protein of unknown function (DUF1449) SH03_RS19420 PF01145 SPFH domain / Band 7 family SH03_RS19420 PF15975 Flotillin SH03_RS19435 PF00294 pfkB family carbohydrate kinase SH03_RS19435 PF01467 Cytidylyltransferase-like SH03_RS19440 PF08335 GlnD PII-uridylyltransferase SH03_RS19440 PF03710 Glutamate-ammonia ligase adenylyltransferase SH03_RS19445 PF01928 CYTH domain SH03_RS19455 PF08239 Bacterial SH3 domain SH03_RS19460 PF01966 HD domain SH03_RS19460 PF01743 Poly A polymerase head domain SH03_RS19460 PF12627 Probable RNA and SrmB- binding site of polymerase A SH03_RS19465 PF02673 Bacitracin resistance protein BacA SH03_RS19470 PF02152 Dihydroneopterin aldolase SH03_RS19475 PF02660 Glycerol-3-phosphate acyltransferase SH03_RS19480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS19480 PF03466 LysR substrate binding domain SH03_RS19485 PF05681 Fumarate hydratase (Fumerase) SH03_RS19495 PF00939 Sodium:sulfate symporter transmembrane region SH03_RS19500 PF00814 Glycoprotease family SH03_RS19505 PF01165 Ribosomal protein S21 SH03_RS19510 PF08278 DNA primase DnaG DnaB-binding SH03_RS19510 PF10410 DnaB-helicase binding domain of primase SH03_RS19510 PF08275 DNA primase catalytic core, N-terminal domain SH03_RS19510 PF01807 CHC2 zinc finger SH03_RS19515 PF04539 Sigma-70 region 3 SH03_RS19515 PF04546 Sigma-70, non-essential region SH03_RS19515 PF03979 Sigma-70 factor, region 1.1 SH03_RS19515 PF04542 Sigma-70 region 2 SH03_RS19515 PF04545 Sigma-70, region 4 SH03_RS19515 PF00140 Sigma-70 factor, region 1.2 SH03_RS19520 PF03167 Uracil DNA glycosylase superfamily SH03_RS19530 PF08021 Siderophore-interacting FAD-binding domain SH03_RS19530 PF04954 Siderophore-interacting protein SH03_RS19535 PF03551 Transcriptional regulator PadR-like family SH03_RS19540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH03_RS19540 PF08447 PAS fold SH03_RS19545 PF00202 Aminotransferase class-III SH03_RS19550 PF01588 Putative tRNA binding domain SH03_RS19555 PF00356 Bacterial regulatory proteins, lacI family SH03_RS19560 PF00703 Glycosyl hydrolases family 2 SH03_RS19560 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH03_RS19560 PF02929 Beta galactosidase small chain SH03_RS19560 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH03_RS19560 PF16353 Domain of unknown function(DUF4981) SH03_RS19565 PF04074 YhcH/YjgK/YiaL SH03_RS19570 PF13520 Amino acid permease SH03_RS19580 PF01204 Trehalase SH03_RS19585 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SH03_RS19585 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH03_RS19590 PF01381 Helix-turn-helix SH03_RS19595 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system SH03_RS19605 PF05175 Methyltransferase small domain SH03_RS19610 PF01863 Protein of unknown function DUF45 SH03_RS19615 PF02698 DUF218 domain SH03_RS19620 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH03_RS19625 PF03741 Integral membrane protein TerC family SH03_RS19630 PF00375 Sodium:dicarboxylate symporter family SH03_RS19635 PF10688 Bacterial inner membrane protein SH03_RS19640 PF08666 SAF domain SH03_RS19640 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus SH03_RS19645 PF02614 Glucuronate isomerase SH03_RS19650 PF07690 Major Facilitator Superfamily SH03_RS19655 PF00392 Bacterial regulatory proteins, gntR family SH03_RS19655 PF07729 FCD domain SH03_RS19660 PF09335 SNARE associated Golgi protein SH03_RS19665 PF13721 SecD export protein N-terminal TM region SH03_RS19670 PF06476 Protein of unknown function (DUF1090) SH03_RS19675 PF05957 Bacterial protein of unknown function (DUF883) SH03_RS19680 PF07332 Putative Actinobacterial Holin-X, holin superfamily III SH03_RS19685 PF13997 YqjK-like protein SH03_RS19690 PF07681 DoxX SH03_RS19695 PF13409 Glutathione S-transferase, N-terminal domain SH03_RS19700 PF05656 Protein of unknown function (DUF805) SH03_RS19705 PF05656 Protein of unknown function (DUF805) SH03_RS19710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS19710 PF03466 LysR substrate binding domain SH03_RS19715 PF02678 Pirin SH03_RS19715 PF17954 Quercetinase C-terminal cupin domain SH03_RS19725 PF03313 Serine dehydratase alpha chain SH03_RS19735 PF03315 Serine dehydratase beta chain SH03_RS19735 PF03313 Serine dehydratase alpha chain SH03_RS19740 PF01042 Endoribonuclease L-PSP SH03_RS19745 PF02901 Pyruvate formate lyase-like SH03_RS19745 PF01228 Glycine radical SH03_RS19755 PF05598 Transposase domain (DUF772) SH03_RS19755 PF01609 Transposase DDE domain SH03_RS19760 PF00871 Acetokinase family SH03_RS19765 PF03222 Tryptophan/tyrosine permease family SH03_RS19770 PF00291 Pyridoxal-phosphate dependent enzyme SH03_RS19775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS19775 PF03466 LysR substrate binding domain SH03_RS19795 PF02595 Glycerate kinase family SH03_RS19800 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH03_RS19800 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH03_RS19805 PF03328 HpcH/HpaI aldolase/citrate lyase family SH03_RS19810 PF07690 Major Facilitator Superfamily SH03_RS19815 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus SH03_RS19815 PF08666 SAF domain SH03_RS19820 PF15937 prlF antitoxin for toxin YhaV_toxin SH03_RS19825 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system SH03_RS19830 PF00455 DeoR C terminal sensor domain SH03_RS19830 PF08220 DeoR-like helix-turn-helix domain SH03_RS19835 PF08013 Tagatose 6 phosphate kinase SH03_RS19840 PF03830 PTS system sorbose subfamily IIB component SH03_RS19845 PF03609 PTS system sorbose-specific iic component SH03_RS19850 PF01979 Amidohydrolase family SH03_RS19855 PF01380 SIS domain SH03_RS19860 PF01116 Fructose-bisphosphate aldolase class-II SH03_RS19865 PF03830 PTS system sorbose subfamily IIB component SH03_RS19870 PF03609 PTS system sorbose-specific iic component SH03_RS19875 PF03613 PTS system mannose/fructose/sorbose family IID component SH03_RS19880 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH03_RS19885 PF00419 Fimbrial protein SH03_RS19890 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH03_RS19890 PF02753 Pili assembly chaperone PapD, C-terminal domain SH03_RS19895 PF00577 Outer membrane usher protein SH03_RS19895 PF13953 PapC C-terminal domain SH03_RS19895 PF13954 PapC N-terminal domain SH03_RS19900 PF00419 Fimbrial protein SH03_RS19905 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH03_RS19910 PF04348 LppC putative lipoprotein SH03_RS19915 PF02021 Uncharacterised protein family UPF0102 SH03_RS19920 PF13580 SIS domain SH03_RS19925 PF04972 BON domain SH03_RS19930 PF03773 Predicted permease SH03_RS19935 PF13460 NAD(P)H-binding SH03_RS19940 PF01965 DJ-1/PfpI family SH03_RS19950 PF01541 GIY-YIG catalytic domain SH03_RS19955 PF13508 Acetyltransferase (GNAT) domain SH03_RS19960 PF02036 SCP-2 sterol transfer family SH03_RS19965 PF01136 Peptidase family U32 SH03_RS19970 PF01136 Peptidase family U32 SH03_RS19975 PF00296 Luciferase-like monooxygenase SH03_RS19980 PF03222 Tryptophan/tyrosine permease family SH03_RS19990 PF12343 Cold shock protein DEAD box A SH03_RS19990 PF03880 DbpA RNA binding domain SH03_RS19990 PF00271 Helicase conserved C-terminal domain SH03_RS19990 PF00270 DEAD/DEAH box helicase SH03_RS19995 PF07719 Tetratricopeptide repeat SH03_RS19995 PF13181 Tetratricopeptide repeat SH03_RS20000 PF00575 S1 RNA binding domain SH03_RS20000 PF00013 KH domain SH03_RS20000 PF03725 3' exoribonuclease family, domain 2 SH03_RS20000 PF01138 3' exoribonuclease family, domain 1 SH03_RS20000 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SH03_RS20005 PF00312 Ribosomal protein S15 SH03_RS20010 PF01509 TruB family pseudouridylate synthase (N terminal domain) SH03_RS20010 PF09157 Pseudouridine synthase II TruB, C-terminal SH03_RS20010 PF16198 tRNA pseudouridylate synthase B C-terminal domain SH03_RS20015 PF02033 Ribosome-binding factor A SH03_RS20020 PF04760 Translation initiation factor IF-2, N-terminal region SH03_RS20020 PF08364 Bacterial translation initiation factor IF-2 associated region SH03_RS20020 PF11987 Translation-initiation factor 2 SH03_RS20020 PF00009 Elongation factor Tu GTP binding domain SH03_RS20025 PF08529 NusA N-terminal domain SH03_RS20025 PF13184 NusA-like KH domain SH03_RS20025 PF00575 S1 RNA binding domain SH03_RS20030 PF17384 RimP C-terminal SH3 domain SH03_RS20030 PF02576 RimP N-terminal domain SH03_RS20040 PF00764 Arginosuccinate synthase SH03_RS20045 PF00884 Sulfatase SH03_RS20055 PF03840 Preprotein translocase SecG subunit SH03_RS20060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH03_RS20060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH03_RS20060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH03_RS20060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH03_RS20065 PF00809 Pterin binding enzyme SH03_RS20070 PF00004 ATPase family associated with various cellular activities (AAA) SH03_RS20070 PF01434 Peptidase family M41 SH03_RS20070 PF06480 FtsH Extracellular SH03_RS20070 PF17862 AAA+ lid domain SH03_RS20075 PF01728 FtsJ-like methyltransferase SH03_RS20080 PF01985 CRS1 / YhbY (CRM) domain SH03_RS20085 PF01272 Transcription elongation factor, GreA/GreB, C-term SH03_RS20085 PF03449 Transcription elongation factor, N-terminal SH03_RS20090 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family SH03_RS20095 PF01926 50S ribosome-binding GTPase SH03_RS20095 PF01018 GTP1/OBG SH03_RS20100 PF00892 EamA-like transporter family SH03_RS20105 PF01016 Ribosomal L27 protein SH03_RS20110 PF00829 Ribosomal prokaryotic L21 protein SH03_RS20115 PF00348 Polyprenyl synthetase SH03_RS20120 PF13693 Winged helix-turn-helix DNA-binding SH03_RS20125 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SH03_RS20130 PF01722 BolA-like protein SH03_RS20135 PF13466 STAS domain SH03_RS20140 PF05494 MlaC protein SH03_RS20145 PF02470 MlaD protein SH03_RS20150 PF02405 Permease MlaE SH03_RS20155 PF00005 ABC transporter SH03_RS20160 PF01699 Sodium/calcium exchanger protein SH03_RS20165 PF01380 SIS domain SH03_RS20165 PF00571 CBS domain SH03_RS20175 PF06835 Lipopolysaccharide-assembly, LptC-related SH03_RS20180 PF03968 OstA-like protein SH03_RS20185 PF00005 ABC transporter SH03_RS20185 PF12399 Branched-chain amino acid ATP-binding cassette transporter SH03_RS20190 PF04963 Sigma-54 factor, core binding domain SH03_RS20190 PF04552 Sigma-54, DNA binding domain SH03_RS20190 PF00309 Sigma-54 factor, Activator interacting domain (AID) SH03_RS20195 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SH03_RS20200 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH03_RS20205 PF03668 P-loop ATPase protein family SH03_RS20210 PF00381 PTS HPr component phosphorylation site SH03_RS20215 PF10707 PhoP regulatory network protein YrbL SH03_RS20220 PF05598 Transposase domain (DUF772) SH03_RS20220 PF01609 Transposase DDE domain SH03_RS20230 PF06551 Protein of unknown function (DUF1120) SH03_RS20235 PF06250 YhcG PDDEXK nuclease domain SH03_RS20235 PF17761 DUF1016 N-terminal domain SH03_RS20240 PF04074 YhcH/YjgK/YiaL SH03_RS20245 PF00480 ROK family SH03_RS20250 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SH03_RS20255 PF07690 Major Facilitator Superfamily SH03_RS20260 PF00701 Dihydrodipicolinate synthetase family SH03_RS20265 PF00392 Bacterial regulatory proteins, gntR family SH03_RS20265 PF07729 FCD domain SH03_RS20270 PF03606 C4-dicarboxylate anaerobic carrier SH03_RS20275 PF04386 Stringent starvation protein B SH03_RS20280 PF00043 Glutathione S-transferase, C-terminal domain SH03_RS20280 PF02798 Glutathione S-transferase, N-terminal domain SH03_RS20285 PF00380 Ribosomal protein S9/S16 SH03_RS20290 PF00572 Ribosomal protein L13 SH03_RS20295 PF03969 AFG1-like ATPase SH03_RS20300 PF06295 Protein of unknown function (DUF1043) SH03_RS20305 PF00595 PDZ domain SH03_RS20305 PF13180 PDZ domain SH03_RS20310 PF13180 PDZ domain SH03_RS20315 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SH03_RS20315 PF00056 lactate/malate dehydrogenase, NAD binding domain SH03_RS20320 PF01316 Arginine repressor, DNA binding domain SH03_RS20320 PF02863 Arginine repressor, C-terminal domain SH03_RS20325 PF07338 Protein of unknown function (DUF1471) SH03_RS20330 PF01337 Barstar (barnase inhibitor) SH03_RS20335 PF04632 Fusaric acid resistance protein family SH03_RS20340 PF13533 Biotin-lipoyl like SH03_RS20345 PF07869 Protein of unknown function (DUF1656) SH03_RS20350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS20350 PF03466 LysR substrate binding domain SH03_RS20355 PF01523 Putative modulator of DNA gyrase SH03_RS20360 PF13502 AsmA-like C-terminal region SH03_RS20360 PF13116 Protein of unknown function SH03_RS20365 PF10150 Ribonuclease E/G family SH03_RS20365 PF00575 S1 RNA binding domain SH03_RS20370 PF02545 Maf-like protein SH03_RS20375 PF04093 rod shape-determining protein MreD SH03_RS20380 PF04085 rod shape-determining protein MreC SH03_RS20395 PF00563 EAL domain SH03_RS20395 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS20395 PF17157 Gammaproteobacterial periplasmic sensor domain SH03_RS20400 PF00107 Zinc-binding dehydrogenase SH03_RS20400 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS20415 PF01794 Ferric reductase like transmembrane component SH03_RS20420 PF00364 Biotin-requiring enzyme SH03_RS20425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH03_RS20425 PF00289 Biotin carboxylase, N-terminal domain SH03_RS20425 PF02785 Biotin carboxylase C-terminal domain SH03_RS20430 PF06196 Protein of unknown function (DUF997) SH03_RS20435 PF00474 Sodium:solute symporter family SH03_RS20445 PF01207 Dihydrouridine synthase (Dus) SH03_RS20450 PF02954 Bacterial regulatory protein, Fis family SH03_RS20455 PF01555 DNA methylase SH03_RS20460 PF10831 Protein of unknown function (DUF2556) SH03_RS20465 PF08361 MAATS-type transcriptional repressor, C-terminal region SH03_RS20465 PF00440 Bacterial regulatory proteins, tetR family SH03_RS20470 PF00529 HlyD membrane-fusion protein of T1SS SH03_RS20470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH03_RS20475 PF00873 AcrB/AcrD/AcrF family SH03_RS20490 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH03_RS20495 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS20500 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS20505 PF00005 ABC transporter SH03_RS20545 PF00132 Bacterial transferase hexapeptide (six repeats) SH03_RS20550 PF07369 Protein of unknown function (DUF1488) SH03_RS20555 PF01488 Shikimate / quinate 5-dehydrogenase SH03_RS20555 PF08501 Shikimate dehydrogenase substrate binding domain SH03_RS20555 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SH03_RS20560 PF01300 Telomere recombination SH03_RS20565 PF01396 Topoisomerase DNA binding C4 zinc finger SH03_RS20570 PF04361 Protein of unknown function (DUF494) SH03_RS20575 PF17782 DprA winged helix domain SH03_RS20575 PF02481 DNA recombination-mediator protein A SH03_RS20580 PF01327 Polypeptide deformylase SH03_RS20585 PF00551 Formyl transferase SH03_RS20585 PF02911 Formyl transferase, C-terminal domain SH03_RS20590 PF01029 NusB family SH03_RS20590 PF01189 16S rRNA methyltransferase RsmB/F SH03_RS20595 PF02080 TrkA-C domain SH03_RS20595 PF02254 TrkA-N domain SH03_RS20600 PF01741 Large-conductance mechanosensitive channel, MscL SH03_RS20605 PF03889 Alternative ribosome-rescue factor A SH03_RS20610 PF13411 MerR HTH family regulatory protein SH03_RS20615 PF09350 Domain of unknown function (DUF1992) SH03_RS20620 PF01196 Ribosomal protein L17 SH03_RS20625 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SH03_RS20625 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SH03_RS20625 PF01000 RNA polymerase Rpb3/RpoA insert domain SH03_RS20630 PF00163 Ribosomal protein S4/S9 N-terminal domain SH03_RS20630 PF01479 S4 domain SH03_RS20635 PF00411 Ribosomal protein S11 SH03_RS20640 PF00416 Ribosomal protein S13/S18 SH03_RS20645 PF00444 Ribosomal protein L36 SH03_RS20650 PF00344 SecY translocase SH03_RS20655 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SH03_RS20660 PF00327 Ribosomal protein L30p/L7e SH03_RS20665 PF00333 Ribosomal protein S5, N-terminal domain SH03_RS20665 PF03719 Ribosomal protein S5, C-terminal domain SH03_RS20670 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SH03_RS20675 PF00347 Ribosomal protein L6 SH03_RS20680 PF00410 Ribosomal protein S8 SH03_RS20685 PF00253 Ribosomal protein S14p/S29e SH03_RS20690 PF00281 Ribosomal protein L5 SH03_RS20690 PF00673 ribosomal L5P family C-terminus SH03_RS20695 PF00467 KOW motif SH03_RS20695 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SH03_RS20700 PF00238 Ribosomal protein L14p/L23e SH03_RS20705 PF00366 Ribosomal protein S17 SH03_RS20710 PF00831 Ribosomal L29 protein SH03_RS20715 PF00252 Ribosomal protein L16p/L10e SH03_RS20720 PF07650 KH domain SH03_RS20720 PF00189 Ribosomal protein S3, C-terminal domain SH03_RS20725 PF00237 Ribosomal protein L22p/L17e SH03_RS20730 PF00203 Ribosomal protein S19 SH03_RS20735 PF03947 Ribosomal Proteins L2, C-terminal domain SH03_RS20735 PF00181 Ribosomal Proteins L2, RNA binding domain SH03_RS20740 PF00276 Ribosomal protein L23 SH03_RS20745 PF00573 Ribosomal protein L4/L1 family SH03_RS20750 PF00297 Ribosomal protein L3 SH03_RS20755 PF00338 Ribosomal protein S10p/S20e SH03_RS20765 PF01471 Putative peptidoglycan binding domain SH03_RS20765 PF13401 AAA domain SH03_RS20770 PF11356 Type II secretion system protein C SH03_RS20775 PF03958 Bacterial type II/III secretion system short domain SH03_RS20775 PF00263 Bacterial type II and III secretion system protein SH03_RS20780 PF00437 Type II/IV secretion system protein SH03_RS20785 PF00482 Type II secretion system (T2SS), protein F SH03_RS20790 PF08334 Type II secretion system (T2SS), protein G SH03_RS20790 PF07963 Prokaryotic N-terminal methylation motif SH03_RS20795 PF12019 Type II transport protein GspH SH03_RS20795 PF07963 Prokaryotic N-terminal methylation motif SH03_RS20800 PF07963 Prokaryotic N-terminal methylation motif SH03_RS20800 PF02501 Type II secretion system (T2SS), protein I SH03_RS20805 PF07963 Prokaryotic N-terminal methylation motif SH03_RS20805 PF11612 Type II secretion system (T2SS), protein J SH03_RS20810 PF03934 Type II secretion system (T2SS), protein K SH03_RS20815 PF05134 Type II secretion system (T2SS), protein L SH03_RS20815 PF12693 GspL periplasmic domain SH03_RS20820 PF04612 Type II secretion system (T2SS), protein M SH03_RS20825 PF01478 Type IV leader peptidase family SH03_RS20830 PF00210 Ferritin-like domain SH03_RS20835 PF04324 BFD-like [2Fe-2S] binding domain SH03_RS20840 PF02839 Carbohydrate binding domain SH03_RS20845 PF03143 Elongation factor Tu C-terminal domain SH03_RS20845 PF03144 Elongation factor Tu domain 2 SH03_RS20845 PF00009 Elongation factor Tu GTP binding domain SH03_RS20850 PF03764 Elongation factor G, domain IV SH03_RS20850 PF03144 Elongation factor Tu domain 2 SH03_RS20850 PF00679 Elongation factor G C-terminus SH03_RS20850 PF00009 Elongation factor Tu GTP binding domain SH03_RS20850 PF14492 Elongation Factor G, domain II SH03_RS20855 PF00177 Ribosomal protein S7p/S5e SH03_RS20860 PF00164 Ribosomal protein S12/S23 SH03_RS20865 PF04077 DsrH like protein SH03_RS20870 PF02635 DsrE/DsrF-like family SH03_RS20875 PF02635 DsrE/DsrF-like family SH03_RS20880 PF08348 YheO-like PAS domain SH03_RS20880 PF13309 HTH domain SH03_RS20885 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SH03_RS20885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH03_RS20890 PF04102 SlyX SH03_RS20895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH03_RS20900 PF09526 Probable metal-binding protein (DUF2387) SH03_RS20905 PF02254 TrkA-N domain SH03_RS20905 PF00999 Sodium/hydrogen exchanger family SH03_RS20910 PF02525 Flavodoxin-like fold SH03_RS20915 PF12848 ABC transporter SH03_RS20915 PF00005 ABC transporter SH03_RS20920 PF00561 alpha/beta hydrolase fold SH03_RS20925 PF06794 Uncharacterised protein family (UPF0270) SH03_RS20930 PF00485 Phosphoribulokinase / Uridine kinase family SH03_RS20935 PF02566 OsmC-like protein SH03_RS20945 PF13545 Crp-like helix-turn-helix domain SH03_RS20945 PF00027 Cyclic nucleotide-binding domain SH03_RS20950 PF12805 FUSC-like inner membrane protein yccS SH03_RS20955 PF00202 Aminotransferase class-III SH03_RS20960 PF00117 Glutamine amidotransferase class-I SH03_RS20965 PF02661 Fic/DOC family SH03_RS20970 PF10832 Protein of unknown function (DUF2559) SH03_RS20975 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SH03_RS20980 PF07690 Major Facilitator Superfamily SH03_RS20985 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH03_RS20985 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SH03_RS20985 PF04324 BFD-like [2Fe-2S] binding domain SH03_RS20985 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SH03_RS20985 PF18267 Rubredoxin NAD+ reductase C-terminal domain SH03_RS20990 PF13806 Rieske-like [2Fe-2S] domain SH03_RS20995 PF01226 Formate/nitrite transporter SH03_RS21000 PF14824 Sirohaem biosynthesis protein central SH03_RS21000 PF10414 Sirohaem synthase dimerisation region SH03_RS21000 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH03_RS21005 PF13978 Protein of unknown function (DUF4223) SH03_RS21010 PF13520 Amino acid permease SH03_RS21015 PF01380 SIS domain SH03_RS21020 PF01261 Xylose isomerase-like TIM barrel SH03_RS21025 PF00294 pfkB family carbohydrate kinase SH03_RS21030 PF07702 UTRA domain SH03_RS21030 PF00392 Bacterial regulatory proteins, gntR family SH03_RS21035 PF00155 Aminotransferase class I and II SH03_RS21040 PF10797 Protein of unknown function SH03_RS21045 PF10941 Protein of unknown function DUF2620 SH03_RS21050 PF02126 Phosphotriesterase family SH03_RS21055 PF01676 Metalloenzyme superfamily SH03_RS21060 PF01168 Alanine racemase, N-terminal domain SH03_RS21070 PF14502 Helix-turn-helix domain SH03_RS21070 PF14503 YhfZ C-terminal domain SH03_RS21075 PF00579 tRNA synthetases class I (W and Y) SH03_RS21080 PF13419 Haloacid dehalogenase-like hydrolase SH03_RS21085 PF00834 Ribulose-phosphate 3 epimerase family SH03_RS21090 PF02086 D12 class N6 adenine-specific DNA methyltransferase SH03_RS21095 PF05036 Sporulation related domain SH03_RS21100 PF01761 3-dehydroquinate synthase SH03_RS21105 PF01202 Shikimate kinase SH03_RS21110 PF00263 Bacterial type II and III secretion system protein SH03_RS21110 PF03958 Bacterial type II/III secretion system short domain SH03_RS21115 PF10748 DNA utilization proteins HofP SH03_RS21125 PF05137 Fimbrial assembly protein (PilN) SH03_RS21135 PF17092 Penicillin-binding protein OB-like domain SH03_RS21135 PF00912 Transglycosylase SH03_RS21135 PF00905 Penicillin binding protein transpeptidase domain SH03_RS21140 PF00293 NUDIX domain SH03_RS21145 PF07095 Intracellular growth attenuator protein IgaA SH03_RS21150 PF13419 Haloacid dehalogenase-like hydrolase SH03_RS21155 PF01479 S4 domain SH03_RS21160 PF01430 Hsp33 protein SH03_RS21165 PF13687 Domain of unknown function (DUF4153) SH03_RS21175 PF01293 Phosphoenolpyruvate carboxykinase SH03_RS21180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS21180 PF00512 His Kinase A (phospho-acceptor) domain SH03_RS21180 PF00672 HAMP domain SH03_RS21185 PF00486 Transcriptional regulatory protein, C terminal SH03_RS21185 PF00072 Response regulator receiver domain SH03_RS21190 PF01272 Transcription elongation factor, GreA/GreB, C-term SH03_RS21190 PF03449 Transcription elongation factor, N-terminal SH03_RS21195 PF09371 Tex-like protein N-terminal domain SH03_RS21195 PF16921 Tex protein YqgF-like domain SH03_RS21195 PF00575 S1 RNA binding domain SH03_RS21195 PF17674 HHH domain SH03_RS21200 PF04023 FeoA domain SH03_RS21205 PF17910 FeoB cytosolic helical domain SH03_RS21205 PF02421 Ferrous iron transport protein B SH03_RS21205 PF07670 Nucleoside recognition SH03_RS21205 PF07664 Ferrous iron transport protein B C terminus SH03_RS21210 PF09012 FeoC like transcriptional regulator SH03_RS21215 PF04754 Putative transposase, YhgA-like SH03_RS21220 PF00561 alpha/beta hydrolase fold SH03_RS21225 PF00156 Phosphoribosyl transferase domain SH03_RS21230 PF01106 NifU-like domain SH03_RS21230 PF01521 Iron-sulphur cluster biosynthesis SH03_RS21235 PF02447 GntP family permease SH03_RS21240 PF02446 4-alpha-glucanotransferase SH03_RS21245 PF00343 Carbohydrate phosphorylase SH03_RS21250 PF00196 Bacterial regulatory proteins, luxR family SH03_RS21250 PF17874 MalT-like TPR region SH03_RS21255 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain SH03_RS21255 PF01137 RNA 3'-terminal phosphate cyclase SH03_RS21260 PF01139 tRNA-splicing ligase RtcB SH03_RS21265 PF00158 Sigma-54 interaction domain SH03_RS21265 PF06956 Regulator of RNA terminal phosphate cyclase SH03_RS21270 PF00455 DeoR C terminal sensor domain SH03_RS21270 PF08220 DeoR-like helix-turn-helix domain SH03_RS21275 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease SH03_RS21275 PF01694 Rhomboid family SH03_RS21280 PF00581 Rhodanese-like domain SH03_RS21285 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SH03_RS21285 PF01266 FAD dependent oxidoreductase SH03_RS21295 PF00343 Carbohydrate phosphorylase SH03_RS21300 PF08323 Starch synthase catalytic domain SH03_RS21300 PF00534 Glycosyl transferases group 1 SH03_RS21305 PF00483 Nucleotidyl transferase SH03_RS21310 PF18390 Glycogen debranching enzyme C-terminal domain SH03_RS21310 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH03_RS21310 PF00128 Alpha amylase, catalytic domain SH03_RS21315 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH03_RS21315 PF02806 Alpha amylase, C-terminal all-beta domain SH03_RS21315 PF00128 Alpha amylase, catalytic domain SH03_RS21320 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH03_RS21320 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH03_RS21325 PF01914 MarC family integral membrane protein SH03_RS21330 PF02447 GntP family permease SH03_RS21335 PF01202 Shikimate kinase SH03_RS21340 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH03_RS21340 PF00356 Bacterial regulatory proteins, lacI family SH03_RS21345 PF02678 Pirin SH03_RS21345 PF17954 Quercetinase C-terminal cupin domain SH03_RS21350 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH03_RS21350 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH03_RS21355 PF00583 Acetyltransferase (GNAT) family SH03_RS21360 PF05638 Type VI secretion system effector, Hcp SH03_RS21370 PF03400 IS1 transposase SH03_RS21375 PF15567 Immunity protein 35 SH03_RS21385 PF10956 Protein of unknown function (DUF2756) SH03_RS21390 PF03009 Glycerophosphoryl diester phosphodiesterase family SH03_RS21395 PF17912 MalK OB fold domain SH03_RS21395 PF00005 ABC transporter SH03_RS21400 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS21405 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS21410 PF13416 Bacterial extracellular solute-binding protein SH03_RS21420 PF00005 ABC transporter SH03_RS21425 PF00005 ABC transporter SH03_RS21425 PF12399 Branched-chain amino acid ATP-binding cassette transporter SH03_RS21430 PF02653 Branched-chain amino acid transport system / permease component SH03_RS21430 PF11862 Domain of unknown function (DUF3382) SH03_RS21435 PF02653 Branched-chain amino acid transport system / permease component SH03_RS21440 PF13458 Periplasmic binding protein SH03_RS21445 PF12568 Acetyltransferase (GNAT) domain, PanZ SH03_RS21455 PF13458 Periplasmic binding protein SH03_RS21460 PF04542 Sigma-70 region 2 SH03_RS21460 PF04545 Sigma-70, region 4 SH03_RS21465 PF02687 FtsX-like permease family SH03_RS21465 PF18075 FtsX extracellular domain SH03_RS21470 PF00005 ABC transporter SH03_RS21475 PF00448 SRP54-type protein, GTPase domain SH03_RS21475 PF02881 SRP54-type protein, helical bundle domain SH03_RS21485 PF06611 Protein of unknown function (DUF1145) SH03_RS21490 PF10694 Protein of unknown function (DUF2500) SH03_RS21495 PF07947 YhhN family SH03_RS21500 PF00403 Heavy-metal-associated domain SH03_RS21505 PF01206 Sulfurtransferase TusA SH03_RS21510 PF02592 Putative vitamin uptake transporter SH03_RS21515 PF08786 DcrB SH03_RS21520 PF07690 Major Facilitator Superfamily SH03_RS21525 PF01594 AI-2E family transporter SH03_RS21530 PF01648 4'-phosphopantetheinyl transferase superfamily SH03_RS21535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH03_RS21540 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS21545 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS21550 PF00005 ABC transporter SH03_RS21555 PF00005 ABC transporter SH03_RS21560 PF08753 NikR C terminal nickel binding domain SH03_RS21560 PF01402 Ribbon-helix-helix protein, copG family SH03_RS21565 PF14220 Domain of unknown function (DUF4329) SH03_RS21565 PF03527 RHS protein SH03_RS21565 PF05593 RHS Repeat SH03_RS21570 PF15631 NTF2 fold immunity protein SH03_RS21580 PF13808 DDE_Tnp_1-associated SH03_RS21580 PF01609 Transposase DDE domain SH03_RS21590 PF00005 ABC transporter SH03_RS21595 PF13533 Biotin-lipoyl like SH03_RS21600 PF13258 Domain of unknown function (DUF4049) SH03_RS21620 PF10951 Protein of unknown function (DUF2776) SH03_RS21630 PF01384 Phosphate transporter family SH03_RS21635 PF10625 Universal stress protein B (UspB) SH03_RS21640 PF00582 Universal stress protein family SH03_RS21645 PF00854 POT family SH03_RS21650 PF04445 Putative SAM-dependent methyltransferase SH03_RS21655 PF01432 Peptidase family M3 SH03_RS21660 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ SH03_RS21665 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH03_RS21665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH03_RS21680 PF01022 Bacterial regulatory protein, arsR family SH03_RS21685 PF02040 Arsenical pump membrane protein SH03_RS21690 PF03960 ArsC family SH03_RS21700 PF05598 Transposase domain (DUF772) SH03_RS21700 PF01609 Transposase DDE domain SH03_RS21710 PF03843 Outer membrane lipoprotein Slp family SH03_RS21715 PF00196 Bacterial regulatory proteins, luxR family SH03_RS21720 PF02308 MgtC family SH03_RS21725 PF06411 HdeA/HdeB family SH03_RS21730 PF06411 HdeA/HdeB family SH03_RS21735 PF03729 Short repeat of unknown function (DUF308) SH03_RS21740 PF00196 Bacterial regulatory proteins, luxR family SH03_RS21750 PF00529 HlyD membrane-fusion protein of T1SS SH03_RS21750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH03_RS21755 PF00873 AcrB/AcrD/AcrF family SH03_RS21760 PF12833 Helix-turn-helix domain SH03_RS21765 PF12833 Helix-turn-helix domain SH03_RS21770 PF00282 Pyridoxal-dependent decarboxylase conserved domain SH03_RS21775 PF03150 Di-haem cytochrome c peroxidase SH03_RS21775 PF00034 Cytochrome c SH03_RS21775 PF14376 Haem-binding domain SH03_RS21780 PF01204 Trehalase SH03_RS21785 PF00196 Bacterial regulatory proteins, luxR family SH03_RS21790 PF03466 LysR substrate binding domain SH03_RS21790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS21795 PF03631 Virulence factor BrkB SH03_RS21800 PF07690 Major Facilitator Superfamily SH03_RS21800 PF00083 Sugar (and other) transporter SH03_RS21805 PF05170 AsmA family SH03_RS21810 PF00563 EAL domain SH03_RS21820 PF00294 pfkB family carbohydrate kinase SH03_RS21825 PF00675 Insulinase (Peptidase family M16) SH03_RS21825 PF05193 Peptidase M16 inactive domain SH03_RS21830 PF00375 Sodium:dicarboxylate symporter family SH03_RS21835 PF00990 Diguanylate cyclase, GGDEF domain SH03_RS21835 PF00672 HAMP domain SH03_RS21835 PF00563 EAL domain SH03_RS21835 PF17154 Gammaproteobacterial periplasmic sensor domain SH03_RS21840 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) SH03_RS21845 PF01270 Glycosyl hydrolases family 8 SH03_RS21850 PF03170 Bacterial cellulose synthase subunit SH03_RS21855 PF03552 Cellulose synthase SH03_RS21855 PF00535 Glycosyl transferase family 2 SH03_RS21855 PF07238 PilZ domain SH03_RS21860 PF06564 Cellulose biosynthesis protein BcsQ SH03_RS21865 PF10945 Cellulose biosynthesis protein BcsR SH03_RS21870 PF01609 Transposase DDE domain SH03_RS21870 PF05598 Transposase domain (DUF772) SH03_RS21875 PF10995 Cellulose biosynthesis GIL SH03_RS21880 PF11120 Cellulose biosynthesis protein BcsF SH03_RS21885 PF11658 Cellulose biosynthesis protein BcsG SH03_RS21890 PF13940 Toxin Ldr, type I toxin-antitoxin system SH03_RS21900 PF03222 Tryptophan/tyrosine permease family SH03_RS21905 PF00005 ABC transporter SH03_RS21905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH03_RS21910 PF00005 ABC transporter SH03_RS21910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH03_RS21915 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS21915 PF12911 N-terminal TM domain of oligopeptide transport permease C SH03_RS21920 PF00528 Binding-protein-dependent transport system inner membrane component SH03_RS21930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH03_RS21945 PF00884 Sulfatase SH03_RS21945 PF08019 Phosphoethanolamine transferase EptA/EptB SH03_RS21950 PF07690 Major Facilitator Superfamily SH03_RS21955 PF03797 Autotransporter beta-domain SH03_RS21960 PF03352 Methyladenine glycosylase SH03_RS21965 PF00583 Acetyltransferase (GNAT) family SH03_RS21970 PF18364 Molybdopterin oxidoreductase N-terminal domain SH03_RS21970 PF00384 Molybdopterin oxidoreductase SH03_RS21970 PF01568 Molydopterin dinucleotide binding domain SH03_RS21975 PF13488 Glycine zipper SH03_RS21975 PF00691 OmpA family SH03_RS21980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH03_RS21980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH03_RS21985 PF11254 Protein of unknown function (DUF3053) SH03_RS21990 PF01381 Helix-turn-helix SH03_RS21995 PF00313 'Cold-shock' DNA-binding domain SH03_RS22000 PF01848 Hok/gef family SH03_RS22010 PF00665 Integrase core domain SH03_RS22010 PF13276 HTH-like domain SH03_RS22010 PF13333 Integrase core domain SH03_RS22015 PF05746 DALR anticodon binding domain SH03_RS22015 PF02092 Glycyl-tRNA synthetase beta subunit SH03_RS22020 PF02091 Glycyl-tRNA synthetase alpha subunit SH03_RS22025 PF13983 YsaB-like lipoprotein SH03_RS22030 PF01757 Acyltransferase family SH03_RS22035 PF05360 yiaA/B two helix domain SH03_RS22040 PF05360 yiaA/B two helix domain SH03_RS22045 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH03_RS22045 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH03_RS22055 PF13407 Periplasmic binding protein domain SH03_RS22060 PF03400 IS1 transposase SH03_RS22065 PF13407 Periplasmic binding protein domain SH03_RS22070 PF00005 ABC transporter SH03_RS22075 PF02653 Branched-chain amino acid transport system / permease component SH03_RS22080 PF12833 Helix-turn-helix domain SH03_RS22085 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH03_RS22090 PF00128 Alpha amylase, catalytic domain SH03_RS22095 PF00155 Aminotransferase class I and II SH03_RS22105 PF13247 4Fe-4S dicluster domain SH03_RS22110 PF09339 IclR helix-turn-helix domain SH03_RS22110 PF01614 Bacterial transcriptional regulator SH03_RS22115 PF02615 Malate/L-lactate dehydrogenase SH03_RS22120 PF04074 YhcH/YjgK/YiaL SH03_RS22125 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SH03_RS22130 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SH03_RS22135 PF03480 Bacterial extracellular solute-binding protein, family 7 SH03_RS22140 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH03_RS22140 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH03_RS22145 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH03_RS22150 PF01261 Xylose isomerase-like TIM barrel SH03_RS22155 PF00596 Class II Aldolase and Adducin N-terminal domain SH03_RS22160 PF06629 MltA-interacting protein MipA SH03_RS22165 PF03466 LysR substrate binding domain SH03_RS22165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH03_RS22170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH03_RS22170 PF00529 HlyD membrane-fusion protein of T1SS SH03_RS22175 PF11742 Protein of unknown function (DUF3302) SH03_RS22185 PF00171 Aldehyde dehydrogenase family SH03_RS22190 PF00465 Iron-containing alcohol dehydrogenase SH03_RS22195 PF09107 Elongation factor SelB, winged helix SH03_RS22195 PF00009 Elongation factor Tu GTP binding domain SH03_RS22195 PF09106 Elongation factor SelB, winged helix SH03_RS22195 PF03144 Elongation factor Tu domain 2 SH03_RS22200 PF03841 L-seryl-tRNA selenium transferase SH03_RS22200 PF12390 Selenocysteine synthase N terminal SH03_RS22205 PF13417 Glutathione S-transferase, N-terminal domain SH03_RS22205 PF00043 Glutathione S-transferase, C-terminal domain SH03_RS22210 PF15606 Bacterial toxin 34 SH03_RS22210 PF03527 RHS protein SH03_RS22210 PF05593 RHS Repeat SH03_RS22215 PF03130 PBS lyase HEAT-like repeat SH03_RS22220 PF03527 RHS protein SH03_RS22235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH03_RS22235 PF00529 HlyD membrane-fusion protein of T1SS SH03_RS22240 PF11742 Protein of unknown function (DUF3302) SH03_RS22250 PF08125 Mannitol dehydrogenase C-terminal domain SH03_RS22250 PF01232 Mannitol dehydrogenase Rossmann domain SH03_RS22255 PF05068 Mannitol repressor SH03_RS22265 PF10928 Protein of unknown function (DUF2810) SH03_RS22270 PF02652 L-lactate permease SH03_RS22275 PF07729 FCD domain SH03_RS22275 PF00392 Bacterial regulatory proteins, gntR family SH03_RS22280 PF01070 FMN-dependent dehydrogenase SH03_RS22285 PF00588 SpoU rRNA Methylase family SH03_RS22290 PF00132 Bacterial transferase hexapeptide (six repeats) SH03_RS22290 PF06426 Serine acetyltransferase, N-terminal SH03_RS22295 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SH03_RS22295 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SH03_RS22300 PF02556 Preprotein translocase subunit SecB SH03_RS22305 PF00462 Glutaredoxin SH03_RS22310 PF00581 Rhodanese-like domain SH03_RS22320 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SH03_RS22320 PF01676 Metalloenzyme superfamily SH03_RS22325 PF01551 Peptidase family M23 SH03_RS22330 PF04748 Divergent polysaccharide deacetylase SH03_RS22335 PF00535 Glycosyl transferase family 2 SH03_RS22340 PF08240 Alcohol dehydrogenase GroES-like domain SH03_RS22340 PF00107 Zinc-binding dehydrogenase SH03_RS22345 PF00155 Aminotransferase class I and II SH03_RS22350 PF09612 Bacterial protein of unknown function (HtrL_YibB) SH03_RS22355 PF01370 NAD dependent epimerase/dehydratase family SH03_RS22360 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH03_RS22365 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH03_RS22370 PF04932 O-Antigen ligase SH03_RS22375 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH03_RS22385 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) SH03_RS22390 PF08437 Glycosyl transferase family 8 C-terminal SH03_RS22390 PF01501 Glycosyl transferase family 8 SH03_RS22395 PF01501 Glycosyl transferase family 8 SH03_RS22395 PF08437 Glycosyl transferase family 8 C-terminal SH03_RS22400 PF13439 Glycosyltransferase Family 4 SH03_RS22400 PF00534 Glycosyl transferases group 1 SH03_RS22415 PF13439 Glycosyltransferase Family 4 SH03_RS22415 PF00534 Glycosyl transferases group 1 SH03_RS22420 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH03_RS22425 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SH03_RS22430 PF01467 Cytidylyltransferase-like SH03_RS22435 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SH03_RS22435 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SH03_RS22435 PF06827 Zinc finger found in FPG and IleRS SH03_RS22440 PF00471 Ribosomal protein L33 SH03_RS22445 PF00830 Ribosomal L28 family SH03_RS22450 PF04002 RadC-like JAB domain SH03_RS22455 PF04127 DNA / pantothenate metabolism flavoprotein SH03_RS22455 PF02441 Flavoprotein SH03_RS22460 PF00692 dUTPase SH03_RS22465 PF00440 Bacterial regulatory proteins, tetR family SH03_RS22470 PF00156 Phosphoribosyl transferase domain SH03_RS22475 PF03725 3' exoribonuclease family, domain 2 SH03_RS22475 PF01138 3' exoribonuclease family, domain 1 SH03_RS22480 PF03755 YicC-like family, N-terminal region SH03_RS22480 PF08340 Domain of unknown function (DUF1732) SH03_RS22490 PF03458 UPF0126 domain SH03_RS22495 PF01653 NAD-dependent DNA ligase adenylation domain SH03_RS22495 PF03120 NAD-dependent DNA ligase OB-fold domain SH03_RS22500 PF00625 Guanylate kinase SH03_RS22505 PF01192 RNA polymerase Rpb6 SH03_RS22510 PF13291 ACT domain SH03_RS22510 PF02824 TGS domain SH03_RS22510 PF04607 Region found in RelA / SpoT proteins SH03_RS22515 PF12105 SpoU, rRNA methylase, C-terminal SH03_RS22515 PF00588 SpoU rRNA Methylase family SH03_RS22520 PF00271 Helicase conserved C-terminal domain SH03_RS22520 PF17191 RecG wedge domain SH03_RS22520 PF00270 DEAD/DEAH box helicase SH03_RS22525 PF03616 Sodium/glutamate symporter SH03_RS22530 PF00860 Permease family SH03_RS22535 PF05170 AsmA family SH03_RS22540 PF01055 Glycosyl hydrolases family 31 SH03_RS22540 PF13802 Galactose mutarotase-like SH03_RS22560 PF07690 Major Facilitator Superfamily SH03_RS22565 PF00892 EamA-like transporter family SH03_RS22570 PF03180 NLPA lipoprotein SH03_RS22585 PF07690 Major Facilitator Superfamily SH03_RS22590 PF06711 Protein of unknown function (DUF1198) SH03_RS22595 PF00860 Permease family SH03_RS22600 PF01979 Amidohydrolase family SH03_RS22600 PF13382 Adenine deaminase C-terminal domain SH03_RS22605 PF07690 Major Facilitator Superfamily SH03_RS22610 PF07690 Major Facilitator Superfamily SH03_RS22615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS22615 PF07730 Histidine kinase SH03_RS22615 PF05231 MASE1 SH03_RS22620 PF00196 Bacterial regulatory proteins, luxR family SH03_RS22620 PF00072 Response regulator receiver domain SH03_RS22625 PF01842 ACT domain SH03_RS22630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH03_RS22630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH03_RS22630 PF00205 Thiamine pyrophosphate enzyme, central domain SH03_RS22635 PF08049 IlvB leader peptide SH03_RS22650 PF13939 Toxin TisB, type I toxin-antitoxin system SH03_RS22655 PF07690 Major Facilitator Superfamily SH03_RS22665 PF02656 Domain of unknown function (DUF202) SH03_RS22670 PF02656 Domain of unknown function (DUF202) SH03_RS22680 PF00884 Sulfatase SH03_RS22680 PF16347 Domain of unknown function (DUF4976) SH03_RS22685 PF00474 Sodium:solute symporter family SH03_RS22690 PF12833 Helix-turn-helix domain SH03_RS22690 PF02311 AraC-like ligand binding domain SH03_RS22695 PF02056 Family 4 glycosyl hydrolase SH03_RS22700 PF00367 phosphotransferase system, EIIB SH03_RS22705 PF02378 Phosphotransferase system, EIIC SH03_RS22710 PF00392 Bacterial regulatory proteins, gntR family SH03_RS22710 PF07702 UTRA domain SH03_RS22715 PF06826 Predicted Permease Membrane Region SH03_RS22715 PF02080 TrkA-C domain SH03_RS22720 PF00011 Hsp20/alpha crystallin family SH03_RS22725 PF00011 Hsp20/alpha crystallin family SH03_RS22730 PF07119 Protein of unknown function (DUF1375) SH03_RS22735 PF12566 Protein of unknown function (DUF3748) SH03_RS22735 PF07676 WD40-like Beta Propeller Repeat SH03_RS22740 PF01494 FAD binding domain SH03_RS22745 PF07690 Major Facilitator Superfamily SH03_RS22750 PF13378 Enolase C-terminal domain-like SH03_RS22750 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH03_RS22755 PF01081 KDPG and KHG aldolase SH03_RS22760 PF05035 2-keto-3-deoxy-galactonokinase SH03_RS22765 PF00392 Bacterial regulatory proteins, gntR family SH03_RS22765 PF07729 FCD domain SH03_RS22780 PF06078 Bacterial protein of unknown function (DUF937) SH03_RS22790 PF00204 DNA gyrase B SH03_RS22790 PF00986 DNA gyrase B subunit, carboxyl terminus SH03_RS22790 PF18053 DNA gyrase B subunit insert domain SH03_RS22790 PF01751 Toprim domain SH03_RS22790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH03_RS22795 PF02463 RecF/RecN/SMC N terminal domain SH03_RS22800 PF02767 DNA polymerase III beta subunit, central domain SH03_RS22800 PF00712 DNA polymerase III beta subunit, N-terminal domain SH03_RS22800 PF02768 DNA polymerase III beta subunit, C-terminal domain SH03_RS22805 PF08299 Bacterial dnaA protein helix-turn-helix SH03_RS22805 PF11638 DnaA N-terminal domain SH03_RS22805 PF00308 Bacterial dnaA protein SH03_RS22865 PF03400 IS1 transposase SH03_RS22875 PF07151 Protein of unknown function (DUF1391) SH03_RS22885 PF00871 Acetokinase family