SH03_RS00015 SM01234 SH03_RS00015 SH03_RS00110 SM01061 CAT RNA binding domain SH03_RS00120 SM00382 ATPases associated with a variety of cellular activities SH03_RS00155 SM00382 ATPases associated with a variety of cellular activities SH03_RS00200 SM01228 SH03_RS00200 SH03_RS00210 SM00344 helix_turn_helix ASNC type SH03_RS00220 SM00327 von Willebrand factor (vWF) type A domain SH03_RS00225 SM00382 ATPases associated with a variety of cellular activities SH03_RS00240 SM00382 ATPases associated with a variety of cellular activities SH03_RS00260 SM00354 helix_turn _helix lactose operon repressor SH03_RS00270 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS00270 SM00895 SH03_RS00270 SH03_RS00315 SM00382 ATPases associated with a variety of cellular activities SH03_RS00380 SM00487 DEAD-like helicases superfamily SH03_RS00380 SM00490 helicase superfamily c-terminal domain SH03_RS00395 SM00357 Cold shock protein domain SH03_RS00395 SM00382 ATPases associated with a variety of cellular activities SH03_RS00395 SM00959 Rho termination factor, N-terminal domain SH03_RS00420 SM00984 UDP binding domain SH03_RS00525 SM01219 SH03_RS00525 SH03_RS00600 SM00341 Helicase and RNase D C-terminal SH03_RS00600 SM00487 DEAD-like helicases superfamily SH03_RS00600 SM00490 helicase superfamily c-terminal domain SH03_RS00600 SM00956 SH03_RS00600 SH03_RS00690 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SH03_RS00790 SM00563 Phosphate acyltransferases SH03_RS00800 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH03_RS00800 SM00474 3'-5' exonuclease SH03_RS00800 SM00475 5'-3' exonuclease SH03_RS00800 SM00482 DNA polymerase A domain SH03_RS00815 SM00729 Elongator protein 3, MiaB family, Radical SAM SH03_RS00825 SM00382 ATPases associated with a variety of cellular activities SH03_RS00825 SM00448 cheY-homologous receiver domain SH03_RS00830 SM00091 PAS domain SH03_RS00830 SM00387 Histidine kinase-like ATPases SH03_RS00830 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS00835 SM01230 SH03_RS00835 SH03_RS00850 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS00850 SM00866 SH03_RS00850 SH03_RS00895 SM01133 SH03_RS00895 SH03_RS00910 SM00420 helix_turn_helix, Deoxyribose operon repressor SH03_RS00910 SM01134 SH03_RS00910 SH03_RS00970 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS01010 SM01007 Class II Aldolase and Adducin N-terminal domain SH03_RS01030 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS01035 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS01065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS01065 SM00387 Histidine kinase-like ATPases SH03_RS01065 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS01070 SM00448 cheY-homologous receiver domain SH03_RS01070 SM00862 Transcriptional regulatory protein, C terminal SH03_RS01160 SM00382 ATPases associated with a variety of cellular activities SH03_RS01160 SM01086 C-terminal, D2-small domain, of ClpB protein SH03_RS01175 SM00354 helix_turn _helix lactose operon repressor SH03_RS01180 SM00487 DEAD-like helicases superfamily SH03_RS01180 SM00490 helicase superfamily c-terminal domain SH03_RS01280 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS01305 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH03_RS01425 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SH03_RS01425 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH03_RS01430 SM00649 Ribosomal protein L11/L12 SH03_RS01455 SM00663 RNA polymerase I subunit A N-terminus SH03_RS01465 SM00876 Biotin and Thiamin Synthesis associated domain SH03_RS01520 SM00411 bacterial (prokaryotic) histone like domain SH03_RS01535 SM00387 Histidine kinase-like ATPases SH03_RS01535 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS01540 SM00382 ATPases associated with a variety of cellular activities SH03_RS01540 SM00448 cheY-homologous receiver domain SH03_RS01545 SM01209 SH03_RS01545 SH03_RS01545 SM01210 SH03_RS01545 SH03_RS01550 SM00798 AICARFT/IMPCHase bienzyme SH03_RS01550 SM00851 MGS-like domain SH03_RS01615 SM00248 ankyrin repeats SH03_RS01620 SM00346 helix_turn_helix isocitrate lyase regulation SH03_RS01625 SM01018 B12 binding domain SH03_RS01640 SM00363 S4 RNA-binding domain SH03_RS01730 SM00382 ATPases associated with a variety of cellular activities SH03_RS01765 SM00563 Phosphate acyltransferases SH03_RS01815 SM00829 Enoylreductase SH03_RS01820 SM00382 ATPases associated with a variety of cellular activities SH03_RS01825 SM01005 Alanine racemase, C-terminal domain SH03_RS01870 SM00052 Putative diguanylate phosphodiesterase SH03_RS01875 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS01880 SM00422 helix_turn_helix, mercury resistance SH03_RS01945 SM00028 Tetratricopeptide repeats SH03_RS01955 SM00671 Sel1-like repeats. SH03_RS01965 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS01990 SM00849 Metallo-beta-lactamase superfamily SH03_RS02010 SM00382 ATPases associated with a variety of cellular activities SH03_RS02045 SM00072 Guanylate kinase homologues. SH03_RS02055 SM00382 ATPases associated with a variety of cellular activities SH03_RS02060 SM00382 ATPases associated with a variety of cellular activities SH03_RS02085 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS02085 SM00866 SH03_RS02085 SH03_RS02100 SM00382 ATPases associated with a variety of cellular activities SH03_RS02135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS02135 SM00387 Histidine kinase-like ATPases SH03_RS02135 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS02140 SM00448 cheY-homologous receiver domain SH03_RS02140 SM00862 Transcriptional regulatory protein, C terminal SH03_RS02155 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS02165 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS02205 SM00448 cheY-homologous receiver domain SH03_RS02210 SM00091 PAS domain SH03_RS02210 SM00387 Histidine kinase-like ATPases SH03_RS02260 SM00862 Transcriptional regulatory protein, C terminal SH03_RS02305 SM00883 Chaperonin 10 Kd subunit SH03_RS02330 SM00841 Elongation factor P, C-terminal SH03_RS02330 SM01185 SH03_RS02330 SH03_RS02415 SM00479 SH03_RS02415 SH03_RS02450 SM00646 SH03_RS02450 SH03_RS02455 SM00853 MutL C terminal dimerisation domain SH03_RS02455 SM01340 SH03_RS02455 SH03_RS02475 SM00244 prohibitin homologues SH03_RS02480 SM00244 prohibitin homologues SH03_RS02490 SM00788 Adenylosuccinate synthetase SH03_RS02500 SM00316 Ribosomal protein S1-like RNA-binding domain SH03_RS02500 SM00357 Cold shock protein domain SH03_RS02500 SM00955 SH03_RS02500 SH03_RS02505 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH03_RS02560 SM00420 helix_turn_helix, Deoxyribose operon repressor SH03_RS02560 SM01134 SH03_RS02560 SH03_RS02585 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH03_RS02595 SM01007 Class II Aldolase and Adducin N-terminal domain SH03_RS02700 SM01091 Transporter associated domain SH03_RS02730 SM00966 SpoVT / AbrB like domain SH03_RS02750 SM00382 ATPases associated with a variety of cellular activities SH03_RS02800 SM00642 Alpha-amylase domain SH03_RS02810 SM00354 helix_turn _helix lactose operon repressor SH03_RS02815 SM00831 Cation transporter/ATPase, N-terminus SH03_RS02850 SM00822 SH03_RS02850 SH03_RS02920 SM00354 helix_turn _helix lactose operon repressor SH03_RS02945 SM00829 Enoylreductase SH03_RS03050 SM00382 ATPases associated with a variety of cellular activities SH03_RS03070 SM00965 Secretin and TonB N terminus short domain SH03_RS03120 SM01130 SH03_RS03120 SH03_RS03125 SM00346 helix_turn_helix isocitrate lyase regulation SH03_RS03130 SM00420 helix_turn_helix, Deoxyribose operon repressor SH03_RS03130 SM01134 SH03_RS03130 SH03_RS03300 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS03300 SM00895 SH03_RS03300 SH03_RS03395 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS03420 SM00382 ATPases associated with a variety of cellular activities SH03_RS03440 SM00487 DEAD-like helicases superfamily SH03_RS03440 SM00490 helicase superfamily c-terminal domain SH03_RS03460 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH03_RS03480 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH03_RS03480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS03480 SM00319 Homologues of the ligand binding domain of Tar SH03_RS03490 SM00895 SH03_RS03490 SH03_RS03495 SM00829 Enoylreductase SH03_RS03510 SM00382 ATPases associated with a variety of cellular activities SH03_RS03530 SM00421 helix_turn_helix, Lux Regulon SH03_RS03535 SM00421 helix_turn_helix, Lux Regulon SH03_RS03590 SM00749 bacterial OsmY and nodulation domain SH03_RS03625 SM01133 SH03_RS03625 SH03_RS03630 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SH03_RS03665 SM00382 ATPases associated with a variety of cellular activities SH03_RS03670 SM00530 Helix-turn-helix XRE-family like proteins SH03_RS03680 SM00382 ATPases associated with a variety of cellular activities SH03_RS03700 SM00855 Phosphoglycerate mutase family SH03_RS03705 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS03705 SM00871 Bacterial transcription activator, effector binding domain SH03_RS03715 SM00448 cheY-homologous receiver domain SH03_RS03715 SM00862 Transcriptional regulatory protein, C terminal SH03_RS03720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS03720 SM00387 Histidine kinase-like ATPases SH03_RS03720 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS03730 SM00448 cheY-homologous receiver domain SH03_RS03730 SM00862 Transcriptional regulatory protein, C terminal SH03_RS03790 SM00852 Probable molybdopterin binding domain SH03_RS03815 SM00271 DnaJ molecular chaperone homology domain SH03_RS03855 SM00904 Riboflavin kinase SH03_RS03900 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SH03_RS03905 SM00851 MGS-like domain SH03_RS03905 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SH03_RS03950 SM00893 Electron transfer flavoprotein domain SH03_RS03955 SM00893 Electron transfer flavoprotein domain SH03_RS04000 SM00650 Ribosomal RNA adenine dimethylases SH03_RS04020 SM00271 DnaJ molecular chaperone homology domain SH03_RS04035 SM00487 DEAD-like helicases superfamily SH03_RS04035 SM00490 helicase superfamily c-terminal domain SH03_RS04040 SM00486 DNA polymerase type-B family SH03_RS04045 SM01007 Class II Aldolase and Adducin N-terminal domain SH03_RS04060 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS04070 SM00382 ATPases associated with a variety of cellular activities SH03_RS04110 SM01329 SH03_RS04110 SH03_RS04115 SM00917 LeuA allosteric (dimerisation) domain SH03_RS04145 SM00354 helix_turn _helix lactose operon repressor SH03_RS04215 SM00842 Cell division protein FtsA SH03_RS04220 SM00864 Tubulin/FtsZ family, GTPase domain SH03_RS04220 SM00865 Tubulin/FtsZ family, C-terminal domain SH03_RS04235 SM00957 SecA DEAD-like domain SH03_RS04235 SM00958 SecA preprotein cross-linking domain SH03_RS04265 SM01240 SH03_RS04265 SH03_RS04295 SM00644 SH03_RS04295 SH03_RS04310 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS04310 SM00895 SH03_RS04310 SH03_RS04365 SM00564 beta-propeller repeat SH03_RS04375 SM00947 Carbonic anhydrase SH03_RS04380 SM00382 ATPases associated with a variety of cellular activities SH03_RS04485 SM00487 DEAD-like helicases superfamily SH03_RS04485 SM00490 helicase superfamily c-terminal domain SH03_RS04485 SM00847 Helicase associated domain (HA2) Add an annotation SH03_RS04505 SM00382 ATPases associated with a variety of cellular activities SH03_RS04550 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH03_RS04555 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH03_RS04580 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH03_RS04625 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH03_RS04635 SM00935 Outer membrane protein (OmpH-like) SH03_RS04665 SM00481 DNA polymerase alpha chain like domain SH03_RS04685 SM00977 TilS substrate C-terminal domain SH03_RS04700 SM01322 SH03_RS04700 SH03_RS04745 SM00382 ATPases associated with a variety of cellular activities SH03_RS04745 SM00930 SH03_RS04745 SH03_RS04805 SM00257 Lysin motif SH03_RS04810 SM00849 Metallo-beta-lactamase superfamily SH03_RS04825 SM00479 SH03_RS04825 SH03_RS04900 SM01321 SH03_RS04900 SH03_RS04970 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SH03_RS05085 SM00382 ATPases associated with a variety of cellular activities SH03_RS05120 SM01130 SH03_RS05120 SH03_RS05140 SM00346 helix_turn_helix isocitrate lyase regulation SH03_RS05205 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH03_RS05210 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH03_RS05255 SM00421 helix_turn_helix, Lux Regulon SH03_RS05295 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS05315 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS05370 SM00052 Putative diguanylate phosphodiesterase SH03_RS05370 SM00421 helix_turn_helix, Lux Regulon SH03_RS05385 SM00248 ankyrin repeats SH03_RS05420 SM00829 Enoylreductase SH03_RS05445 SM00382 ATPases associated with a variety of cellular activities SH03_RS05485 SM00947 Carbonic anhydrase SH03_RS05490 SM01116 SH03_RS05490 SH03_RS05500 SM01266 SH03_RS05500 SH03_RS05510 SM01038 Beta galactosidase small chain SH03_RS05520 SM00346 helix_turn_helix isocitrate lyase regulation SH03_RS05545 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH03_RS05570 SM00829 Enoylreductase SH03_RS05610 SM00062 Bacterial periplasmic substrate-binding proteins SH03_RS05615 SM00382 ATPases associated with a variety of cellular activities SH03_RS05630 SM01004 Delta-aminolevulinic acid dehydratase SH03_RS05655 SM00869 Autotransporter beta-domain SH03_RS05710 SM00098 Alkaline phosphatase homologues SH03_RS05720 SM00267 diguanylate cyclase SH03_RS05790 SM00448 cheY-homologous receiver domain SH03_RS05790 SM00862 Transcriptional regulatory protein, C terminal SH03_RS05795 SM00091 PAS domain SH03_RS05795 SM00387 Histidine kinase-like ATPases SH03_RS05795 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS05810 SM00642 Alpha-amylase domain SH03_RS05830 SM01323 SH03_RS05830 SH03_RS05845 SM00507 HNH nucleases SH03_RS05900 SM00861 Transketolase, pyrimidine binding domain SH03_RS05915 SM00981 SH03_RS05915 SH03_RS05995 SM00382 ATPases associated with a variety of cellular activities SH03_RS05995 SM00994 ClpX C4-type zinc finger SH03_RS05995 SM01086 C-terminal, D2-small domain, of ClpB protein SH03_RS06000 SM00382 ATPases associated with a variety of cellular activities SH03_RS06000 SM00464 Found in ATP-dependent protease La (LON) SH03_RS06005 SM00411 bacterial (prokaryotic) histone like domain SH03_RS06015 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH03_RS06040 SM00344 helix_turn_helix ASNC type SH03_RS06045 SM00382 ATPases associated with a variety of cellular activities SH03_RS06050 SM00382 ATPases associated with a variety of cellular activities SH03_RS06055 SM00938 Nitrogen regulatory protein P-II SH03_RS06085 SM00052 Putative diguanylate phosphodiesterase SH03_RS06095 SM01266 SH03_RS06095 SH03_RS06155 SM00382 ATPases associated with a variety of cellular activities SH03_RS06165 SM00493 SH03_RS06165 SH03_RS06170 SM00387 Histidine kinase-like ATPases SH03_RS06220 SM00530 Helix-turn-helix XRE-family like proteins SH03_RS06240 SM00422 helix_turn_helix, mercury resistance SH03_RS06250 SM00244 prohibitin homologues SH03_RS06255 SM00382 ATPases associated with a variety of cellular activities SH03_RS06270 SM00822 SH03_RS06270 SH03_RS06280 SM00382 ATPases associated with a variety of cellular activities SH03_RS06315 SM00450 Rhodanese Homology Domain SH03_RS06330 SM00346 helix_turn_helix isocitrate lyase regulation SH03_RS06410 SM01001 AIR carboxylase SH03_RS06425 SM00840 SH03_RS06425 SH03_RS06470 SM00421 helix_turn_helix, Lux Regulon SH03_RS06470 SM00448 cheY-homologous receiver domain SH03_RS06525 SM00857 Resolvase, N terminal domain SH03_RS06535 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS06650 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS06665 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS06675 SM00028 Tetratricopeptide repeats SH03_RS06685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS06685 SM00387 Histidine kinase-like ATPases SH03_RS06685 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS06690 SM00448 cheY-homologous receiver domain SH03_RS06690 SM00862 Transcriptional regulatory protein, C terminal SH03_RS06775 SM00923 MbtH-like protein SH03_RS06780 SM00823 Phosphopantetheine attachment site SH03_RS06780 SM00824 Thioesterase SH03_RS06790 SM00382 ATPases associated with a variety of cellular activities SH03_RS06830 SM00822 SH03_RS06830 SH03_RS06860 SM00470 ParB-like nuclease domain SH03_RS06945 SM00764 Citrate lyase ligase C-terminal domain SH03_RS06950 SM00091 PAS domain SH03_RS06950 SM00387 Histidine kinase-like ATPases SH03_RS06955 SM00448 cheY-homologous receiver domain SH03_RS06970 SM00357 Cold shock protein domain SH03_RS06990 SM00729 Elongator protein 3, MiaB family, Radical SAM SH03_RS07015 SM00936 Penicillin-binding protein 5, C-terminal domain SH03_RS07045 SM00855 Phosphoglycerate mutase family SH03_RS07075 SM00671 Sel1-like repeats. SH03_RS07085 SM00271 DnaJ molecular chaperone homology domain SH03_RS07090 SM00671 Sel1-like repeats. SH03_RS07115 SM00382 ATPases associated with a variety of cellular activities SH03_RS07130 SM00062 Bacterial periplasmic substrate-binding proteins SH03_RS07145 SM00116 Domain in cystathionine beta-synthase and other proteins. SH03_RS07145 SM01091 Transporter associated domain SH03_RS07160 SM00729 Elongator protein 3, MiaB family, Radical SAM SH03_RS07320 SM00448 cheY-homologous receiver domain SH03_RS07320 SM00862 Transcriptional regulatory protein, C terminal SH03_RS07325 SM00387 Histidine kinase-like ATPases SH03_RS07325 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS07410 SM00796 Allophanate hydrolase subunit 1 SH03_RS07415 SM00797 Allophanate hydrolase subunit 2 SH03_RS07425 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SH03_RS07425 SM01232 SH03_RS07425 SH03_RS07490 SM00861 Transketolase, pyrimidine binding domain SH03_RS07505 SM00881 CoA binding domain SH03_RS07510 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS07510 SM00866 SH03_RS07510 SH03_RS07520 SM00872 Alpha mannosidase, middle domain SH03_RS07650 SM00855 Phosphoglycerate mutase family SH03_RS07675 SM00382 ATPases associated with a variety of cellular activities SH03_RS07700 SM00382 ATPases associated with a variety of cellular activities SH03_RS07750 SM00729 Elongator protein 3, MiaB family, Radical SAM SH03_RS07750 SM00876 Biotin and Thiamin Synthesis associated domain SH03_RS07770 SM00487 DEAD-like helicases superfamily SH03_RS07770 SM00490 helicase superfamily c-terminal domain SH03_RS07785 SM00729 Elongator protein 3, MiaB family, Radical SAM SH03_RS07790 SM00852 Probable molybdopterin binding domain SH03_RS07825 SM00155 Phospholipase D. Active site motifs. SH03_RS07850 SM00382 ATPases associated with a variety of cellular activities SH03_RS07865 SM00487 DEAD-like helicases superfamily SH03_RS07865 SM00490 helicase superfamily c-terminal domain SH03_RS07875 SM00487 DEAD-like helicases superfamily SH03_RS07875 SM00488 SH03_RS07875 SH03_RS07875 SM00491 SH03_RS07875 SH03_RS07900 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. SH03_RS07925 SM00382 ATPases associated with a variety of cellular activities SH03_RS07935 SM00062 Bacterial periplasmic substrate-binding proteins SH03_RS07935 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH03_RS07970 SM00529 Helix-turn-helix diphteria tox regulatory element SH03_RS07985 SM00382 ATPases associated with a variety of cellular activities SH03_RS08020 SM00852 Probable molybdopterin binding domain SH03_RS08030 SM00382 ATPases associated with a variety of cellular activities SH03_RS08050 SM00052 Putative diguanylate phosphodiesterase SH03_RS08055 SM00267 diguanylate cyclase SH03_RS08060 SM00729 Elongator protein 3, MiaB family, Radical SAM SH03_RS08080 SM00936 Penicillin-binding protein 5, C-terminal domain SH03_RS08085 SM00420 helix_turn_helix, Deoxyribose operon repressor SH03_RS08085 SM01134 SH03_RS08085 SH03_RS08090 SM00014 Acid phosphatase homologues SH03_RS08165 SM00382 ATPases associated with a variety of cellular activities SH03_RS08190 SM00062 Bacterial periplasmic substrate-binding proteins SH03_RS08190 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH03_RS08205 SM00062 Bacterial periplasmic substrate-binding proteins SH03_RS08205 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH03_RS08210 SM00382 ATPases associated with a variety of cellular activities SH03_RS08225 SM00644 SH03_RS08225 SH03_RS08290 SM00382 ATPases associated with a variety of cellular activities SH03_RS08295 SM00357 Cold shock protein domain SH03_RS08305 SM00382 ATPases associated with a variety of cellular activities SH03_RS08305 SM01086 C-terminal, D2-small domain, of ClpB protein SH03_RS08315 SM00316 Ribosomal protein S1-like RNA-binding domain SH03_RS08325 SM00382 ATPases associated with a variety of cellular activities SH03_RS08330 SM00382 ATPases associated with a variety of cellular activities SH03_RS08340 SM00344 helix_turn_helix ASNC type SH03_RS08345 SM00843 SH03_RS08345 SH03_RS08355 SM00382 ATPases associated with a variety of cellular activities SH03_RS08365 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS08450 SM00316 Ribosomal protein S1-like RNA-binding domain SH03_RS08455 SM00411 bacterial (prokaryotic) histone like domain SH03_RS08460 SM00849 Metallo-beta-lactamase superfamily SH03_RS08465 SM00382 ATPases associated with a variety of cellular activities SH03_RS08530 SM00849 Metallo-beta-lactamase superfamily SH03_RS08565 SM00382 ATPases associated with a variety of cellular activities SH03_RS08580 SM00062 Bacterial periplasmic substrate-binding proteins SH03_RS08640 SM00981 SH03_RS08640 SH03_RS08645 SM00382 ATPases associated with a variety of cellular activities SH03_RS08720 SM00851 MGS-like domain SH03_RS08735 SM00881 CoA binding domain SH03_RS08740 SM00992 Hemimethylated DNA-binding protein YccV like SH03_RS08745 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SH03_RS08825 SM00226 Low molecular weight phosphatase family SH03_RS08865 SM00357 Cold shock protein domain SH03_RS08870 SM00357 Cold shock protein domain SH03_RS08890 SM00073 Histidine Phosphotransfer domain SH03_RS08890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS08890 SM00387 Histidine kinase-like ATPases SH03_RS08890 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS08890 SM00448 cheY-homologous receiver domain SH03_RS08900 SM00448 cheY-homologous receiver domain SH03_RS08900 SM00862 Transcriptional regulatory protein, C terminal SH03_RS08925 SM00271 DnaJ molecular chaperone homology domain SH03_RS08965 SM00903 Flavin reductase like domain SH03_RS09060 SM00028 Tetratricopeptide repeats SH03_RS09065 SM00267 diguanylate cyclase SH03_RS09105 SM00481 DNA polymerase alpha chain like domain SH03_RS09135 SM00421 helix_turn_helix, Lux Regulon SH03_RS09165 SM00506 Appr-1"-p processing enzyme SH03_RS09170 SM00155 Phospholipase D. Active site motifs. SH03_RS09225 SM00450 Rhodanese Homology Domain SH03_RS09230 SM00867 YceI-like domain SH03_RS09310 SM00858 SH03_RS09310 SH03_RS09355 SM00047 Lysozyme subfamily 2 SH03_RS09370 SM00316 Ribosomal protein S1-like RNA-binding domain SH03_RS09380 SM00363 S4 RNA-binding domain SH03_RS09410 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SH03_RS09415 SM00822 SH03_RS09415 SH03_RS09425 SM00825 Beta-ketoacyl synthase SH03_RS09515 SM00257 Lysin motif SH03_RS09520 SM00487 DEAD-like helicases superfamily SH03_RS09520 SM00490 helicase superfamily c-terminal domain SH03_RS09520 SM00982 SH03_RS09520 SH03_RS09520 SM01058 CarD-like/TRCF domain SH03_RS09535 SM00382 ATPases associated with a variety of cellular activities SH03_RS09580 SM00382 ATPases associated with a variety of cellular activities SH03_RS09595 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. SH03_RS09600 SM00387 Histidine kinase-like ATPases SH03_RS09605 SM00448 cheY-homologous receiver domain SH03_RS09605 SM00862 Transcriptional regulatory protein, C terminal SH03_RS09635 SM01329 SH03_RS09635 SH03_RS09655 SM00422 helix_turn_helix, mercury resistance SH03_RS09660 SM00052 Putative diguanylate phosphodiesterase SH03_RS09660 SM01034 Sensors of blue-light using FAD SH03_RS09685 SM00052 Putative diguanylate phosphodiesterase SH03_RS09800 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS09815 SM01005 Alanine racemase, C-terminal domain SH03_RS09820 SM01091 Transporter associated domain SH03_RS09860 SM01120 SH03_RS09860 SH03_RS09870 SM00091 PAS domain SH03_RS09870 SM00382 ATPases associated with a variety of cellular activities SH03_RS09875 SM00869 Autotransporter beta-domain SH03_RS09905 SM01400 SH03_RS09905 SH03_RS09925 SM00937 SH03_RS09925 SH03_RS09985 SM00421 helix_turn_helix, Lux Regulon SH03_RS09985 SM00448 cheY-homologous receiver domain SH03_RS09990 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS09990 SM00387 Histidine kinase-like ATPases SH03_RS10005 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS10055 SM00448 cheY-homologous receiver domain SH03_RS10065 SM00528 Domain in histone-like proteins of HNS family SH03_RS10110 SM00382 ATPases associated with a variety of cellular activities SH03_RS10115 SM00382 ATPases associated with a variety of cellular activities SH03_RS10125 SM00155 Phospholipase D. Active site motifs. SH03_RS10210 SM00481 DNA polymerase alpha chain like domain SH03_RS10225 SM00363 S4 RNA-binding domain SH03_RS10235 SM00822 SH03_RS10235 SH03_RS10260 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH03_RS10260 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH03_RS10260 SM00493 SH03_RS10260 SH03_RS10295 SM00014 Acid phosphatase homologues SH03_RS10305 SM00028 Tetratricopeptide repeats SH03_RS10310 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH03_RS10325 SM00420 helix_turn_helix, Deoxyribose operon repressor SH03_RS10325 SM01134 SH03_RS10325 SH03_RS10335 SM00052 Putative diguanylate phosphodiesterase SH03_RS10335 SM00091 PAS domain SH03_RS10335 SM00267 diguanylate cyclase SH03_RS10345 SM00357 Cold shock protein domain SH03_RS10345 SM00955 SH03_RS10345 SH03_RS10365 SM00382 ATPases associated with a variety of cellular activities SH03_RS10370 SM00382 ATPases associated with a variety of cellular activities SH03_RS10405 SM01230 SH03_RS10405 SH03_RS10415 SM00530 Helix-turn-helix XRE-family like proteins SH03_RS10435 SM00382 ATPases associated with a variety of cellular activities SH03_RS10460 SM00450 Rhodanese Homology Domain SH03_RS10465 SM00642 Alpha-amylase domain SH03_RS10520 SM00354 helix_turn _helix lactose operon repressor SH03_RS10535 SM00091 PAS domain SH03_RS10535 SM00382 ATPases associated with a variety of cellular activities SH03_RS10545 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH03_RS10600 SM00100 Cyclic nucleotide-monophosphate binding domain SH03_RS10600 SM00419 helix_turn_helix, cAMP Regulatory protein SH03_RS10640 SM00463 Small MutS-related domain SH03_RS10645 SM00091 PAS domain SH03_RS10645 SM00267 diguanylate cyclase SH03_RS10660 SM00487 DEAD-like helicases superfamily SH03_RS10660 SM00490 helicase superfamily c-terminal domain SH03_RS10760 SM00470 ParB-like nuclease domain SH03_RS10815 SM00857 Resolvase, N terminal domain SH03_RS10835 SM00890 Domain of unknown function SH03_RS10870 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS11005 SM00195 Dual specificity phosphatase, catalytic domain SH03_RS11005 SM00404 Protein tyrosine phosphatase, catalytic domain motif SH03_RS11015 SM00382 ATPases associated with a variety of cellular activities SH03_RS11015 SM00487 DEAD-like helicases superfamily SH03_RS11015 SM00490 helicase superfamily c-terminal domain SH03_RS11015 SM00847 Helicase associated domain (HA2) Add an annotation SH03_RS11060 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH03_RS11060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS11060 SM00319 Homologues of the ligand binding domain of Tar SH03_RS11070 SM01150 SH03_RS11070 SH03_RS11120 SM01321 SH03_RS11120 SH03_RS11135 SM00530 Helix-turn-helix XRE-family like proteins SH03_RS11155 SM00530 Helix-turn-helix XRE-family like proteins SH03_RS11160 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS11170 SM00382 ATPases associated with a variety of cellular activities SH03_RS11215 SM00829 Enoylreductase SH03_RS11220 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS11220 SM00895 SH03_RS11220 SH03_RS11275 SM00903 Flavin reductase like domain SH03_RS11305 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS11330 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS11350 SM00530 Helix-turn-helix XRE-family like proteins SH03_RS11355 SM00829 Enoylreductase SH03_RS11360 SM00919 Malic enzyme, NAD binding domain SH03_RS11360 SM01274 SH03_RS11360 SH03_RS11380 SM00382 ATPases associated with a variety of cellular activities SH03_RS11385 SM00382 ATPases associated with a variety of cellular activities SH03_RS11410 SM00052 Putative diguanylate phosphodiesterase SH03_RS11410 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH03_RS11410 SM00091 PAS domain SH03_RS11410 SM00267 diguanylate cyclase SH03_RS11415 SM00267 diguanylate cyclase SH03_RS11450 SM00382 ATPases associated with a variety of cellular activities SH03_RS11465 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS11510 SM00530 Helix-turn-helix XRE-family like proteins SH03_RS11515 SM00869 Autotransporter beta-domain SH03_RS11535 SM00382 ATPases associated with a variety of cellular activities SH03_RS11555 SM01133 SH03_RS11555 SH03_RS11585 SM00267 diguanylate cyclase SH03_RS11625 SM00347 helix_turn_helix multiple antibiotic resistance protein SH03_RS11630 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS11655 SM00267 diguanylate cyclase SH03_RS11680 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS11680 SM00895 SH03_RS11680 SH03_RS11705 SM00857 Resolvase, N terminal domain SH03_RS11745 SM00357 Cold shock protein domain SH03_RS11770 SM00357 Cold shock protein domain SH03_RS11775 SM00357 Cold shock protein domain SH03_RS11785 SM00507 HNH nucleases SH03_RS11830 SM00530 Helix-turn-helix XRE-family like proteins SH03_RS11880 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH03_RS11910 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS11915 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS11995 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SH03_RS11995 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SH03_RS12020 SM00448 cheY-homologous receiver domain SH03_RS12020 SM00862 Transcriptional regulatory protein, C terminal SH03_RS12025 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS12025 SM00387 Histidine kinase-like ATPases SH03_RS12025 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS12080 SM00354 helix_turn _helix lactose operon repressor SH03_RS12140 SM00900 SH03_RS12140 SH03_RS12150 SM00478 endonuclease III SH03_RS12150 SM00525 SH03_RS12150 SH03_RS12175 SM00363 S4 RNA-binding domain SH03_RS12200 SM00347 helix_turn_helix multiple antibiotic resistance protein SH03_RS12250 SM00479 SH03_RS12250 SH03_RS12255 SM00382 ATPases associated with a variety of cellular activities SH03_RS12255 SM00487 DEAD-like helicases superfamily SH03_RS12255 SM00490 helicase superfamily c-terminal domain SH03_RS12285 SM00354 helix_turn _helix lactose operon repressor SH03_RS12360 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain SH03_RS12385 SM00257 Lysin motif SH03_RS12405 SM00382 ATPases associated with a variety of cellular activities SH03_RS12465 SM00882 Coenzyme A transferase SH03_RS12475 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS12485 SM00893 Electron transfer flavoprotein domain SH03_RS12490 SM00893 Electron transfer flavoprotein domain SH03_RS12565 SM00411 bacterial (prokaryotic) histone like domain SH03_RS12570 SM00873 B3/4 domain SH03_RS12570 SM00874 tRNA synthetase B5 domain SH03_RS12570 SM00896 Ferredoxin-fold anticodon binding domain SH03_RS12600 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH03_RS12665 SM01060 SH03_RS12665 SH03_RS12680 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS12715 SM00465 GIY-YIG type nucleases (URI domain) SH03_RS12790 SM00382 ATPases associated with a variety of cellular activities SH03_RS12795 SM00450 Rhodanese Homology Domain SH03_RS12815 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SH03_RS12825 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH03_RS12825 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH03_RS12825 SM00493 SH03_RS12825 SH03_RS12855 SM00870 SH03_RS12855 SH03_RS12870 SM00420 helix_turn_helix, Deoxyribose operon repressor SH03_RS12870 SM01134 SH03_RS12870 SH03_RS12890 SM00829 Enoylreductase SH03_RS12915 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH03_RS12935 SM00763 PrkA AAA domain SH03_RS12945 SM00267 diguanylate cyclase SH03_RS12950 SM00267 diguanylate cyclase SH03_RS12970 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS12990 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH03_RS12990 SM00267 diguanylate cyclase SH03_RS13025 SM01329 SH03_RS13025 SH03_RS13045 SM00341 Helicase and RNase D C-terminal SH03_RS13045 SM00474 3'-5' exonuclease SH03_RS13065 SM00487 DEAD-like helicases superfamily SH03_RS13065 SM00491 SH03_RS13065 SH03_RS13100 SM00052 Putative diguanylate phosphodiesterase SH03_RS13105 SM01091 Transporter associated domain SH03_RS13150 SM00357 Cold shock protein domain SH03_RS13180 SM00346 helix_turn_helix isocitrate lyase regulation SH03_RS13195 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH03_RS13195 SM00245 tail specific protease SH03_RS13200 SM00945 ProQ/FINO family SH03_RS13205 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH03_RS13270 SM00479 SH03_RS13270 SH03_RS13340 SM00257 Lysin motif SH03_RS13350 SM00382 ATPases associated with a variety of cellular activities SH03_RS13360 SM00382 ATPases associated with a variety of cellular activities SH03_RS13365 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH03_RS13440 SM00836 DALR anticodon binding domain SH03_RS13440 SM01016 Arginyl tRNA synthetase N terminal dom SH03_RS13470 SM00448 cheY-homologous receiver domain SH03_RS13475 SM00448 cheY-homologous receiver domain SH03_RS13480 SM00138 Methyltransferase, chemotaxis proteins SH03_RS13485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH03_RS13485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS13485 SM00319 Homologues of the ligand binding domain of Tar SH03_RS13490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH03_RS13490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS13490 SM00319 Homologues of the ligand binding domain of Tar SH03_RS13495 SM00260 Two component signalling adaptor domain SH03_RS13500 SM00073 Histidine Phosphotransfer domain SH03_RS13500 SM00260 Two component signalling adaptor domain SH03_RS13500 SM00387 Histidine kinase-like ATPases SH03_RS13500 SM01231 SH03_RS13500 SH03_RS13545 SM00382 ATPases associated with a variety of cellular activities SH03_RS13615 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH03_RS13615 SM00465 GIY-YIG type nucleases (URI domain) SH03_RS13620 SM00421 helix_turn_helix, Lux Regulon SH03_RS13620 SM00448 cheY-homologous receiver domain SH03_RS13635 SM00421 helix_turn_helix, Lux Regulon SH03_RS13640 SM00382 ATPases associated with a variety of cellular activities SH03_RS13655 SM00062 Bacterial periplasmic substrate-binding proteins SH03_RS13655 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH03_RS13690 SM00642 Alpha-amylase domain SH03_RS13755 SM00382 ATPases associated with a variety of cellular activities SH03_RS13805 SM00421 helix_turn_helix, Lux Regulon SH03_RS13825 SM00267 diguanylate cyclase SH03_RS13855 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH03_RS13885 SM00387 Histidine kinase-like ATPases SH03_RS13885 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS13890 SM00448 cheY-homologous receiver domain SH03_RS13890 SM00862 Transcriptional regulatory protein, C terminal SH03_RS13895 SM00095 Transthyretin SH03_RS13940 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins SH03_RS13940 SM00634 Bacterial Ig-like domain (group 1) SH03_RS14050 SM00869 Autotransporter beta-domain SH03_RS14105 SM00871 Bacterial transcription activator, effector binding domain SH03_RS14110 SM00936 Penicillin-binding protein 5, C-terminal domain SH03_RS14115 SM00479 SH03_RS14115 SH03_RS14200 SM00984 UDP binding domain SH03_RS14205 SM01350 SH03_RS14205 SH03_RS14365 SM00226 Low molecular weight phosphatase family SH03_RS14375 SM00116 Domain in cystathionine beta-synthase and other proteins. SH03_RS14375 SM01091 Transporter associated domain SH03_RS14395 SM00052 Putative diguanylate phosphodiesterase SH03_RS14395 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH03_RS14395 SM00091 PAS domain SH03_RS14395 SM00267 diguanylate cyclase SH03_RS14400 SM00478 endonuclease III SH03_RS14400 SM01009 AlkA N-terminal domain SH03_RS14430 SM00327 von Willebrand factor (vWF) type A domain SH03_RS14455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS14455 SM00387 Histidine kinase-like ATPases SH03_RS14455 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS14460 SM00448 cheY-homologous receiver domain SH03_RS14460 SM00862 Transcriptional regulatory protein, C terminal SH03_RS14490 SM00046 Diacylglycerol kinase catalytic domain (presumed) SH03_RS14495 SM01134 SH03_RS14495 SH03_RS14510 SM00420 helix_turn_helix, Deoxyribose operon repressor SH03_RS14515 SM00829 Enoylreductase SH03_RS14545 SM01133 SH03_RS14545 SH03_RS14565 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS14565 SM00866 SH03_RS14565 SH03_RS14570 SM00641 Glycosyl hydrolases family 25 SH03_RS14640 SM00773 Proposed nucleic acid binding domain SH03_RS14660 SM00382 ATPases associated with a variety of cellular activities SH03_RS14670 SM00327 von Willebrand factor (vWF) type A domain SH03_RS14690 SM00448 cheY-homologous receiver domain SH03_RS14690 SM00850 LytTr DNA-binding domain SH03_RS14695 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH03_RS14700 SM00422 helix_turn_helix, mercury resistance SH03_RS14715 SM00382 ATPases associated with a variety of cellular activities SH03_RS14730 SM01217 SH03_RS14730 SH03_RS14830 SM00354 helix_turn _helix lactose operon repressor SH03_RS14880 SM00518 AP endonuclease family 2 SH03_RS14900 SM00100 Cyclic nucleotide-monophosphate binding domain SH03_RS14945 SM00841 Elongation factor P, C-terminal SH03_RS14945 SM01185 SH03_RS14945 SH03_RS14955 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH03_RS14960 SM00014 Acid phosphatase homologues SH03_RS14970 SM00052 Putative diguanylate phosphodiesterase SH03_RS14990 SM00382 ATPases associated with a variety of cellular activities SH03_RS15005 SM00363 S4 RNA-binding domain SH03_RS15010 SM00487 DEAD-like helicases superfamily SH03_RS15010 SM00490 helicase superfamily c-terminal domain SH03_RS15040 SM00869 Autotransporter beta-domain SH03_RS15055 SM00421 helix_turn_helix, Lux Regulon SH03_RS15055 SM00448 cheY-homologous receiver domain SH03_RS15095 SM00382 ATPases associated with a variety of cellular activities SH03_RS15120 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS15150 SM00382 ATPases associated with a variety of cellular activities SH03_RS15160 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS15185 SM00387 Histidine kinase-like ATPases SH03_RS15190 SM00421 helix_turn_helix, Lux Regulon SH03_RS15190 SM00448 cheY-homologous receiver domain SH03_RS15195 SM00387 Histidine kinase-like ATPases SH03_RS15195 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS15195 SM00448 cheY-homologous receiver domain SH03_RS15200 SM00091 PAS domain SH03_RS15200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS15200 SM00387 Histidine kinase-like ATPases SH03_RS15200 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS15205 SM00382 ATPases associated with a variety of cellular activities SH03_RS15205 SM00448 cheY-homologous receiver domain SH03_RS15210 SM00882 Coenzyme A transferase SH03_RS15215 SM00882 Coenzyme A transferase SH03_RS15245 SM01359 SH03_RS15245 SH03_RS15245 SM01360 SH03_RS15245 SH03_RS15260 SM00434 DNA Topoisomerase IV SH03_RS15270 SM00869 Autotransporter beta-domain SH03_RS15355 SM00346 helix_turn_helix isocitrate lyase regulation SH03_RS15360 SM00852 Probable molybdopterin binding domain SH03_RS15425 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH03_RS15460 SM00849 Metallo-beta-lactamase superfamily SH03_RS15470 SM00327 von Willebrand factor (vWF) type A domain SH03_RS15535 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH03_RS15535 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SH03_RS15540 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SH03_RS15575 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH03_RS15640 SM00905 Dihydroneopterin aldolase SH03_RS15655 SM00382 ATPases associated with a variety of cellular activities SH03_RS15670 SM00062 Bacterial periplasmic substrate-binding proteins SH03_RS15675 SM00062 Bacterial periplasmic substrate-binding proteins SH03_RS15720 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH03_RS15740 SM00825 Beta-ketoacyl synthase SH03_RS15780 SM00463 Small MutS-related domain SH03_RS15975 SM00421 helix_turn_helix, Lux Regulon SH03_RS15975 SM00448 cheY-homologous receiver domain SH03_RS15980 SM00062 Bacterial periplasmic substrate-binding proteins SH03_RS15980 SM00073 Histidine Phosphotransfer domain SH03_RS15980 SM00387 Histidine kinase-like ATPases SH03_RS15980 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS15980 SM00448 cheY-homologous receiver domain SH03_RS16035 SM00387 Histidine kinase-like ATPases SH03_RS16040 SM00448 cheY-homologous receiver domain SH03_RS16040 SM00850 LytTr DNA-binding domain SH03_RS16045 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS16110 SM00052 Putative diguanylate phosphodiesterase SH03_RS16110 SM00267 diguanylate cyclase SH03_RS16200 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH03_RS16200 SM00292 breast cancer carboxy-terminal domain SH03_RS16200 SM00532 Ligase N family SH03_RS16205 SM00771 ZipA, C-terminal domain (FtsZ-binding) SH03_RS16245 SM00773 Proposed nucleic acid binding domain SH03_RS16255 SM00382 ATPases associated with a variety of cellular activities SH03_RS16275 SM00822 SH03_RS16275 SH03_RS16320 SM00646 SH03_RS16320 SH03_RS16330 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS16335 SM00877 SH03_RS16335 SH03_RS16340 SM00877 SH03_RS16340 SH03_RS16385 SM00877 SH03_RS16385 SH03_RS16410 SM00877 SH03_RS16410 SH03_RS16415 SM00919 Malic enzyme, NAD binding domain SH03_RS16415 SM01274 SH03_RS16415 SH03_RS16425 SM00861 Transketolase, pyrimidine binding domain SH03_RS16445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS16445 SM00387 Histidine kinase-like ATPases SH03_RS16505 SM01130 SH03_RS16505 SH03_RS16570 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH03_RS16570 SM00382 ATPases associated with a variety of cellular activities SH03_RS16630 SM00052 Putative diguanylate phosphodiesterase SH03_RS16630 SM00267 diguanylate cyclase SH03_RS16660 SM00116 Domain in cystathionine beta-synthase and other proteins. SH03_RS16660 SM01240 SH03_RS16660 SH03_RS16680 SM00564 beta-propeller repeat SH03_RS16700 SM00530 Helix-turn-helix XRE-family like proteins SH03_RS16710 SM00562 SH03_RS16710 SH03_RS16720 SM01359 SH03_RS16720 SH03_RS16720 SM01360 SH03_RS16720 SH03_RS16725 SM00450 Rhodanese Homology Domain SH03_RS16755 SM00271 DnaJ molecular chaperone homology domain SH03_RS16845 SM00829 Enoylreductase SH03_RS16855 SM00382 ATPases associated with a variety of cellular activities SH03_RS16865 SM00028 Tetratricopeptide repeats SH03_RS16885 SM00938 Nitrogen regulatory protein P-II SH03_RS16890 SM00382 ATPases associated with a variety of cellular activities SH03_RS16890 SM00448 cheY-homologous receiver domain SH03_RS16900 SM00387 Histidine kinase-like ATPases SH03_RS16900 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS16905 SM01211 SH03_RS16905 SH03_RS16910 SM00062 Bacterial periplasmic substrate-binding proteins SH03_RS16970 SM00358 Double-stranded RNA binding motif SH03_RS16970 SM00535 Ribonuclease III family SH03_RS17020 SM00487 DEAD-like helicases superfamily SH03_RS17020 SM00490 helicase superfamily c-terminal domain SH03_RS17045 SM00986 Uracil DNA glycosylase superfamily SH03_RS17045 SM00987 UreE urease accessory protein, C-terminal domain SH03_RS17050 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH03_RS17065 SM01144 SH03_RS17065 SH03_RS17070 SM00881 CoA binding domain SH03_RS17075 SM00155 Phospholipase D. Active site motifs. SH03_RS17115 SM00382 ATPases associated with a variety of cellular activities SH03_RS17115 SM01086 C-terminal, D2-small domain, of ClpB protein SH03_RS17125 SM00363 S4 RNA-binding domain SH03_RS17145 SM00830 Chorismate mutase type II SH03_RS17150 SM00830 Chorismate mutase type II SH03_RS17170 SM00267 diguanylate cyclase SH03_RS17200 SM00382 ATPases associated with a variety of cellular activities SH03_RS17200 SM00962 SRP54-type protein, GTPase domain SH03_RS17200 SM00963 SRP54-type protein, helical bundle domain SH03_RS17210 SM01091 Transporter associated domain SH03_RS17280 SM00487 DEAD-like helicases superfamily SH03_RS17280 SM00490 helicase superfamily c-terminal domain SH03_RS17445 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS17445 SM00895 SH03_RS17445 SH03_RS17450 SM00257 Lysin motif SH03_RS17450 SM00749 bacterial OsmY and nodulation domain SH03_RS17460 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH03_RS17465 SM00450 Rhodanese Homology Domain SH03_RS17470 SM00528 Domain in histone-like proteins of HNS family SH03_RS17510 SM00382 ATPases associated with a variety of cellular activities SH03_RS17540 SM00347 helix_turn_helix multiple antibiotic resistance protein SH03_RS17610 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH03_RS17635 SM01059 Chloramphenicol acetyltransferase SH03_RS17675 SM00420 helix_turn_helix, Deoxyribose operon repressor SH03_RS17675 SM01134 SH03_RS17675 SH03_RS17685 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH03_RS17685 SM00382 ATPases associated with a variety of cellular activities SH03_RS17690 SM00849 Metallo-beta-lactamase superfamily SH03_RS17710 SM00354 helix_turn _helix lactose operon repressor SH03_RS17800 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH03_RS17800 SM00382 ATPases associated with a variety of cellular activities SH03_RS17810 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SH03_RS17810 SM00534 ATPase domain of DNA mismatch repair MUTS family SH03_RS17820 SM00420 helix_turn_helix, Deoxyribose operon repressor SH03_RS17820 SM01134 SH03_RS17820 SH03_RS17835 SM01007 Class II Aldolase and Adducin N-terminal domain SH03_RS17855 SM00257 Lysin motif SH03_RS17925 SM01101 SH03_RS17925 SH03_RS17950 SM00487 DEAD-like helicases superfamily SH03_RS17950 SM00490 helicase superfamily c-terminal domain SH03_RS17995 SM00893 Electron transfer flavoprotein domain SH03_RS18040 SM01192 SH03_RS18040 SH03_RS18040 SM01193 SH03_RS18040 SH03_RS18060 SM00966 SpoVT / AbrB like domain SH03_RS18065 SM00954 Region found in RelA / SpoT proteins SH03_RS18075 SM00073 Histidine Phosphotransfer domain SH03_RS18075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS18075 SM00387 Histidine kinase-like ATPases SH03_RS18075 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS18075 SM00448 cheY-homologous receiver domain SH03_RS18080 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH03_RS18085 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH03_RS18140 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH03_RS18140 SM00475 5'-3' exonuclease SH03_RS18150 SM01007 Class II Aldolase and Adducin N-terminal domain SH03_RS18175 SM00420 helix_turn_helix, Deoxyribose operon repressor SH03_RS18175 SM01134 SH03_RS18175 SH03_RS18215 SM00925 MltA specific insert domain SH03_RS18235 SM00646 SH03_RS18235 SH03_RS18295 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH03_RS18315 SM00927 DNA mismatch repair enzyme MutH SH03_RS18340 SM00563 Phosphate acyltransferases SH03_RS18345 SM00354 helix_turn _helix lactose operon repressor SH03_RS18395 SM00862 Transcriptional regulatory protein, C terminal SH03_RS18420 SM00028 Tetratricopeptide repeats SH03_RS18420 SM00862 Transcriptional regulatory protein, C terminal SH03_RS18435 SM00421 helix_turn_helix, Lux Regulon SH03_RS18485 SM00257 Lysin motif SH03_RS18490 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH03_RS18495 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH03_RS18505 SM00091 PAS domain SH03_RS18505 SM00382 ATPases associated with a variety of cellular activities SH03_RS18560 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH03_RS18565 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH03_RS18620 SM00937 SH03_RS18620 SH03_RS18665 SM01022 SH03_RS18665 SH03_RS18705 SM01011 Aminopeptidase P, N-terminal domain SH03_RS18795 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH03_RS18830 SM00861 Transketolase, pyrimidine binding domain SH03_RS18875 SM00731 SprT homologues. SH03_RS18900 SM00732 Likely ribonuclease with RNase H fold. SH03_RS18905 SM00382 ATPases associated with a variety of cellular activities SH03_RS18920 SM01152 SH03_RS18920 SH03_RS18930 SM00729 Elongator protein 3, MiaB family, Radical SAM SH03_RS18940 SM00870 SH03_RS18940 SH03_RS18965 SM00478 endonuclease III SH03_RS18965 SM00525 SH03_RS18965 SH03_RS19025 SM01276 SH03_RS19025 SH03_RS19065 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS19065 SM00895 SH03_RS19065 SH03_RS19210 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS19240 SM00729 Elongator protein 3, MiaB family, Radical SAM SH03_RS19250 SM00563 Phosphate acyltransferases SH03_RS19255 SM00434 DNA Topoisomerase IV SH03_RS19265 SM00530 Helix-turn-helix XRE-family like proteins SH03_RS19275 SM00871 Bacterial transcription activator, effector binding domain SH03_RS19285 SM00448 cheY-homologous receiver domain SH03_RS19285 SM00862 Transcriptional regulatory protein, C terminal SH03_RS19290 SM00387 Histidine kinase-like ATPases SH03_RS19290 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS19310 SM00387 Histidine kinase-like ATPases SH03_RS19310 SM00433 TopoisomeraseII SH03_RS19420 SM00244 prohibitin homologues SH03_RS19445 SM01118 SH03_RS19445 SH03_RS19455 SM00287 Bacterial SH3 domain homologues SH03_RS19470 SM00905 Dihydroneopterin aldolase SH03_RS19475 SM01207 SH03_RS19475 SH03_RS19510 SM00400 zinc finger SH03_RS19510 SM00493 SH03_RS19510 SH03_RS19510 SM00766 DNA primase DnaG DnaB-binding SH03_RS19540 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH03_RS19540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH03_RS19555 SM00354 helix_turn _helix lactose operon repressor SH03_RS19560 SM01038 Beta galactosidase small chain SH03_RS19590 SM00530 Helix-turn-helix XRE-family like proteins SH03_RS19640 SM00858 SH03_RS19640 SH03_RS19655 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS19655 SM00895 SH03_RS19655 SH03_RS19815 SM00858 SH03_RS19815 SH03_RS19830 SM00420 helix_turn_helix, Deoxyribose operon repressor SH03_RS19830 SM01134 SH03_RS19830 SH03_RS19925 SM00749 bacterial OsmY and nodulation domain SH03_RS19935 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH03_RS19950 SM00465 GIY-YIG type nucleases (URI domain) SH03_RS19990 SM00487 DEAD-like helicases superfamily SH03_RS19990 SM00490 helicase superfamily c-terminal domain SH03_RS19995 SM00028 Tetratricopeptide repeats SH03_RS20000 SM00316 Ribosomal protein S1-like RNA-binding domain SH03_RS20000 SM00322 K homology RNA-binding domain SH03_RS20005 SM01387 SH03_RS20005 SH03_RS20025 SM00316 Ribosomal protein S1-like RNA-binding domain SH03_RS20070 SM00382 ATPases associated with a variety of cellular activities SH03_RS20080 SM01103 SH03_RS20080 SH03_RS20155 SM00382 ATPases associated with a variety of cellular activities SH03_RS20185 SM00382 ATPases associated with a variety of cellular activities SH03_RS20260 SM01130 SH03_RS20260 SH03_RS20265 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS20265 SM00895 SH03_RS20265 SH03_RS20305 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH03_RS20310 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH03_RS20365 SM00316 Ribosomal protein S1-like RNA-binding domain SH03_RS20395 SM00052 Putative diguanylate phosphodiesterase SH03_RS20395 SM00267 diguanylate cyclase SH03_RS20400 SM00829 Enoylreductase SH03_RS20425 SM00878 Biotin carboxylase C-terminal domain SH03_RS20490 SM00062 Bacterial periplasmic substrate-binding proteins SH03_RS20505 SM00382 ATPases associated with a variety of cellular activities SH03_RS20610 SM00422 helix_turn_helix, mercury resistance SH03_RS20625 SM00662 RNA polymerases D SH03_RS20630 SM00363 S4 RNA-binding domain SH03_RS20630 SM01390 SH03_RS20630 SH03_RS20695 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH03_RS20700 SM01374 SH03_RS20700 SH03_RS20720 SM00322 K homology RNA-binding domain SH03_RS20735 SM01382 SH03_RS20735 SH03_RS20735 SM01383 SH03_RS20735 SH03_RS20755 SM01403 SH03_RS20755 SH03_RS20780 SM00382 ATPases associated with a variety of cellular activities SH03_RS20840 SM00495 Chitin-binding domain type 3 SH03_RS20850 SM00838 Elongation factor G C-terminus SH03_RS20850 SM00889 Elongation factor G, domain IV SH03_RS20915 SM00382 ATPases associated with a variety of cellular activities SH03_RS20945 SM00100 Cyclic nucleotide-monophosphate binding domain SH03_RS20945 SM00419 helix_turn_helix, cAMP Regulatory protein SH03_RS21030 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS21030 SM00866 SH03_RS21030 SH03_RS21110 SM00965 Secretin and TonB N terminus short domain SH03_RS21155 SM00363 S4 RNA-binding domain SH03_RS21180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH03_RS21180 SM00387 Histidine kinase-like ATPases SH03_RS21180 SM00388 His Kinase A (phosphoacceptor) domain SH03_RS21185 SM00448 cheY-homologous receiver domain SH03_RS21185 SM00862 Transcriptional regulatory protein, C terminal SH03_RS21195 SM00316 Ribosomal protein S1-like RNA-binding domain SH03_RS21195 SM00732 Likely ribonuclease with RNase H fold. SH03_RS21200 SM00899 SH03_RS21200 SH03_RS21250 SM00421 helix_turn_helix, Lux Regulon SH03_RS21265 SM00382 ATPases associated with a variety of cellular activities SH03_RS21270 SM00420 helix_turn_helix, Deoxyribose operon repressor SH03_RS21270 SM01134 SH03_RS21270 SH03_RS21280 SM00450 Rhodanese Homology Domain SH03_RS21310 SM00642 Alpha-amylase domain SH03_RS21315 SM00642 Alpha-amylase domain SH03_RS21320 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH03_RS21340 SM00354 helix_turn _helix lactose operon repressor SH03_RS21395 SM00382 ATPases associated with a variety of cellular activities SH03_RS21420 SM00382 ATPases associated with a variety of cellular activities SH03_RS21425 SM00382 ATPases associated with a variety of cellular activities SH03_RS21470 SM00382 ATPases associated with a variety of cellular activities SH03_RS21475 SM00382 ATPases associated with a variety of cellular activities SH03_RS21475 SM00962 SRP54-type protein, GTPase domain SH03_RS21475 SM00963 SRP54-type protein, helical bundle domain SH03_RS21550 SM00382 ATPases associated with a variety of cellular activities SH03_RS21555 SM00382 ATPases associated with a variety of cellular activities SH03_RS21590 SM00382 ATPases associated with a variety of cellular activities SH03_RS21680 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH03_RS21715 SM00421 helix_turn_helix, Lux Regulon SH03_RS21760 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS21765 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS21775 SM01235 SH03_RS21775 SH03_RS21785 SM00421 helix_turn_helix, Lux Regulon SH03_RS21810 SM00052 Putative diguanylate phosphodiesterase SH03_RS21835 SM00052 Putative diguanylate phosphodiesterase SH03_RS21835 SM00267 diguanylate cyclase SH03_RS21840 SM00028 Tetratricopeptide repeats SH03_RS21905 SM00382 ATPases associated with a variety of cellular activities SH03_RS21910 SM00382 ATPases associated with a variety of cellular activities SH03_RS21990 SM00530 Helix-turn-helix XRE-family like proteins SH03_RS21995 SM00357 Cold shock protein domain SH03_RS22070 SM00382 ATPases associated with a variety of cellular activities SH03_RS22080 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS22085 SM00047 Lysozyme subfamily 2 SH03_RS22090 SM00642 Alpha-amylase domain SH03_RS22110 SM00346 helix_turn_helix isocitrate lyase regulation SH03_RS22145 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH03_RS22155 SM01007 Class II Aldolase and Adducin N-terminal domain SH03_RS22275 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS22275 SM00895 SH03_RS22275 SH03_RS22290 SM00971 Serine acetyltransferase, N-terminal SH03_RS22310 SM00450 Rhodanese Homology Domain SH03_RS22340 SM00829 Enoylreductase SH03_RS22435 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SH03_RS22435 SM01232 SH03_RS22435 SH03_RS22495 SM00532 Ligase N family SH03_RS22500 SM00072 Guanylate kinase homologues. SH03_RS22505 SM01409 SH03_RS22505 SH03_RS22510 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH03_RS22510 SM00954 Region found in RelA / SpoT proteins SH03_RS22520 SM00487 DEAD-like helicases superfamily SH03_RS22520 SM00490 helicase superfamily c-terminal domain SH03_RS22615 SM00387 Histidine kinase-like ATPases SH03_RS22620 SM00421 helix_turn_helix, Lux Regulon SH03_RS22620 SM00448 cheY-homologous receiver domain SH03_RS22690 SM00342 helix_turn_helix, arabinose operon control protein SH03_RS22710 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS22710 SM00866 SH03_RS22710 SH03_RS22750 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH03_RS22765 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH03_RS22765 SM00895 SH03_RS22765 SH03_RS22790 SM00387 Histidine kinase-like ATPases SH03_RS22790 SM00433 TopoisomeraseII SH03_RS22800 SM00480 DNA polymerase III beta subunit SH03_RS22805 SM00382 ATPases associated with a variety of cellular activities SH03_RS22805 SM00760 Bacterial dnaA protein helix-turn-helix domain