SH03_RS00015 NONE
SH03_RS00020    3019 ..    3036 + -12.7  -5.83211   TTTCGCTAAAATAAG             GGCGGTC AGTT GACCGCC              TTTTTTCTTTTCGTA 100 51
        trmE    4472 ..    4507 + -15.6  -3.53712   TAAGTAACCGCGCTT    ACGAAGCCGCATTCTGA CTG TCAGA-TGCGGCTTCGC    TTCATTGTTACCACT 100 34
SH03_RS00030    4818 ..    4835 +  -2.1  -4.55209   CAGAGCCAAACCGAT             TAGATTCA ATG TGA-TCTA             TTTGTTTGCTATATC  60 63
        tnaA    6428 ..    6454 +  -8.1  -3.06492   TTAATTAATACTACA         GAGTGGCTA TAAGGATGT TAGCCACTC         TCTTACCCTACATCC  62 37
SH03_RS00040    7764 ..    7786 + -13.5  -3.12351   GGCTAAATCCTTCAA           GAAGCCAGC CATTC GCTGGCTTC           TTGCCTCTCAGGAAA 100 35
SH03_RS00045 NONE
SH03_RS00050   10101 ..   10112 +    -3  -3.44124   CTGTCCATCATTCCA                GTAA ATGA TTAC                 TCTTGTATTCATAAT  49 131
SH03_RS00055 NONE
SH03_RS00060   11498 ..   11522 + -12.2  -4.57837   GATCTAAATAAAAAA         CCCGCCA-GCA ATCA TGCATGGCGGG          TTTTTAACGCGCTAT 100 34
SH03_RS00070 NONE
SH03_RS00075   14249 ..   14259 +    -4  -3.62096   CTTTAAGTTAAGCGG                 GATA CTT TATC                 TTTGGGCTACTCAAA  54 30
SH03_RS00080   14901 ..   14928 +  -7.7   -4.2204   TAAATAATGAGAACA        GGCCGGA-GCGT AATTC ACACATCCGGCC        TTATTTCTTAAGCTT  76 46
SH03_RS00215   44912 ..   44926 +  -4.9  -3.25304   CACACAGACAATAAA               CGGCC CGCGC GGCTG               TTCATCGTAATCTTT  49 519
        trkD   49463 ..   49487 +  -9.3  -5.50723   AAATCTAACGCCAGA          CGCCTCCTT TCTTCAT AAGGGGGCG          TTTTTGTTTTCATGG 100 33
SH03_RS00235   50023 ..   50057 +  -5.6  -3.37612   GAATATCATTCTCTG     TGCTGGCGTGACGTTC TGA GGCCGTCATGGAAGCA     TTACTTCAGCTTAAA  57 7
SH03_RS00240 NONE
        rbsC NONE
SH03_RS00250   53522 ..   53544 + -13.4  -3.22906   AGAAAAGCAGGGCAC           GCGCCACCCT AAC ACGGTGGCGC           ATTTTATGGACATCC 100 108
SH03_RS00255 NONE
SH03_RS00260   55605 ..   55616 +  -2.2  -2.57757   TATAGTGGAATTGTT                CGAC AGTC GTTG                 TGCCTTCCATTCCTT  38 140
SH03_RS00275   59641 ..   59654 +  -2.3  -2.72471   AAGAAGCGTTCTTTG               CAGTG CTCA CACAG                ATTGTCTGATAGGAA  40 34
SH03_RS00280   59817 ..   59852 +    -7  -4.00532   AGTCACCTGCCTTAA    TATCTCAAAACTCATC TTCG GGTGATGTTTGAGATA     TTTGCTCTTTAAAAA  69 61
SH03_RS00285   62954 ..   62967 +  -2.4  -2.78679   AGAACGCAGAAGCGG               TCTG ATGAAA CAGA                ATTTGCCTGGCGGCC  41 89
SH03_RS00290   63107 ..   63122 +  -6.1  -2.82742   AAATTAAGCAGTAAG              CCGGT CATAAA ACCGG               TGGTTGTAAAAGAAT  55 44
SH03_RS00295   63215 ..   63234 +  -2.8  -2.79684   GAGTCCCGTCCGTTC            CGCCACC CTAATTA GG-GGCG            TAGTTCAATTGGTAG  42 21
SH03_RS00300   63311 ..   63330 + -10.8  -6.02914   CCCTGCCAGAAATCA            TCCTTAGC GAAA GCTAAGGA             TTTTTTTTATCTGAA 100 33
SH03_RS00310   64702 ..   64714 +  -6.9  -5.72616   GACGATTAATAAAAA                GGGCG AAA TGCCC                TTTTTTTATGTCAGT 100 32
SH03_RS00320   66716 ..   66739 + -13.8  -5.81032   CTTAACGAACTAAGA          CCCCCGCACC GAAA GGTCCGGGGG           TTTTTTTTGACCTTA 100 50
SH03_RS00325 NONE
        ilvM NONE
SH03_RS00335   69695 ..   69716 + -11.6  -3.53012   AATAAATACAAAAAA           TGGGACGG CACGCA CCGTCCCA            TTTACGAGACAGACA  89 36
SH03_RS00340 NONE
SH03_RS00345   73239 ..   73255 +  -9.4  -4.82901   AGAATGCCTCAATTA              GCGGCT CATGT AGCCGC              TTTTTCTGCGCACAC  95 118
SH03_RS00355   75772 ..   75800 + -16.1  -3.24825   AGAGGGAGAAAACAC        TCAAGGCCTTCTC CTG GAGAAGGCCTTGC        TATTAGTTGCGGTAC 100 81
SH03_RS00370   79033 ..   79059 +  -8.8  -3.73224   AATGCACTTCCAGCG        GCCAGTGGACA TAGCTC TG-CCACTGGC         TTTCCTGAGCAATAA  75 89
        trxA   82338 ..   82366 +  -4.5  -3.93038   GGTCAGTTGAAAGAG        TTCCTCGACGCTA ACC TGGCGTAAGGGAA        TTTCATGTTCGGGTG  61 2
SH03_RS00390 NONE
         rho NONE
SH03_RS00400 NONE
SH03_RS00405 NONE
SH03_RS00410   86359 ..   86384 + -18.3  -3.61517   AATAGCAACACTGCT         GCGGTGAGCGC AAAG GCGCTCGCCGC          TTATTCGAAGAGAAT 100 36
SH03_RS00415 NONE
        wecC NONE
SH03_RS00425   89847 ..   89857 +  -3.2  -3.08032   AGGGCGAGCGTTTAG                 GTCT GAA AGGC                 TAATTTTCAGCGGAG  46 12
SH03_RS00430 NONE
SH03_RS00435 NONE
SH03_RS00440 NONE
SH03_RS00445 NONE
SH03_RS00450 NONE
SH03_RS00455 NONE
SH03_RS00460   96985 ..   97010 + -13.3  -3.18764   TTCCTCTCTTTGTAA         AGCGACGGAGT GGTC ACTCCGTCGCC          TGTCTGCTTTTTTAT 100 43
SH03_RS00465 NONE
SH03_RS00470   98709 ..   98722 +  -2.3  -3.72695   CTCAGGTTCGAATCC               TGTCG GGCG CGCCA                TTTAGTCCCGGCGCT  49 12
SH03_RS00475 NONE
SH03_RS00480 NONE
SH03_RS00485   99091 ..   99106 + -11.8   -5.8901   CCGACCAATTTTGAA              CCCCGC TTCG GCGGGG               TTTTTTGTTTTCTGT 100 34
SH03_RS00490  100639 ..  100684 +  -7.7  -3.74077   TAGTCAGATTTAATC TGCGCGCGTG-GTGGATATTTT TTC AGGATCTCCATATACGCGTGCA TTTCGGTCTGTAGCG  72 200
        cyaA  109972 ..  110007 +  -3.2  -3.01924   AATATTTTTCGTGAT    GAACGTGCCGGA-AAGC GAG GCTTATCCGGCATGCAA    TCTTAGCGGAAACTG  44 27
SH03_RS00530 NONE
        dapF NONE
SH03_RS00540 NONE
        xerC NONE
SH03_RS00550  114198 ..  114231 +  -8.1  -2.93708   TATATATACCCAGCT     TTTTGGCGGAGG-GCG TTG CGCTTCTCCGCCCAAC     CTATTTTTACGCGGC  62 53
        uvrD  116430 ..  116442 +  -9.1   -3.9392   AACGTTGCCGGATGC                GGTGC TGC GCACC                TTATTTGGCCTAAAA  80 39
SH03_RS00565  117539 ..  117576 +  -6.4  -3.29144   GTCATCCAGGATCAA   CTCCTAAGGCTATC CCTTTTTGCT GATAGCCTTAGCGG    TTGTCAGCGACCTCA  59 111
SH03_RS00570  118659 ..  118683 + -15.1  -3.38991   GTAAAAAACGAGAGC          GGTGGCTTAGT CTG GCTAAGCCACC          TGTTATTCAAAGGCT 100 37
SH03_RS00595  122086 ..  122107 + -12.3  -5.27335   TTGCAGTTTCTCGCG           CAGGCGCTG AAAA TAGCGCCTG            TTTTTATTTCAGGCA 100 109
SH03_RS00600 NONE
SH03_RS00605  124669 ..  124705 +  -8.8  -4.58395   GACGCGTCTTCAGAG   TAA-GTCGGATAAGGCG TTTA CGCCGCATCCGACATTA    TTTTTCACGCATGCC 100 46
SH03_RS00615  126445 ..  126458 +  -2.3  -3.94868   CTCACCCAGCGGAAA               CCGCT CTAC AGAGG                TTTAAATTTCTTATG  53 7
SH03_RS00620  127307 ..  127353 +  -2.3  -2.86271   TGTCAACCTGATACT TCGCTACAATGG-ATACCCGTT AATC AAAGAGTTTTCCATTGTGGCGC TACTTATCATCACCA  41 61
SH03_RS00625  128526 ..  128539 +  -6.7  -3.08706   GATAAATTAATAGCG               TCTCG CTGG CGAGA                TCTTCCGGTGTAATT  59 305
SH03_RS00635  131592 ..  131616 + -14.3   -4.5442   CGGGGGTAAAATCCA          AACCGGGTGGT AAT ACCACCCGGTC          TTTTCTCATTACAGC 100 32
SH03_RS00645  133483 ..  133499 +  -9.4  -4.98672   CTTCTCCTGTCTGAA              GGCCGA CGCGT TCGGCC              TTTTGTATTTTTGCG 100 45
SH03_RS00650  135084 ..  135101 +  -2.7  -3.68256   CATCGACGCCCAATC             TGTTACA CTTC TGGAACA              ATTTTTTGATGAGCA  50 78
        ubiE NONE
SH03_RS00660 NONE
        ubiB  138159 ..  138180 +  -2.9  -4.51743   CATCGCTCAAGGCGG           GCCGTGTAA CGTA TAATGCGGC            TTTGTTTAATCATCA  61 47
        tatA NONE
SH03_RS00675 NONE
SH03_RS00680  139787 ..  139808 + -15.9  -2.63596   ACTGAAGAATAAATT           CAACCGCCC GTCA GGGCGGTTG            TCATATGGAGTACAG 100 29
SH03_RS00685  140873 ..  140883 +  -8.2  -3.23692   CGAAGTGGCTGACAC                 CGCG GGT CGCG                 TTGATAGTCGTGGTA  63 291
SH03_RS00695  142744 ..  142758 +  -2.7  -4.67651   TTTAACAACGGTAAA               AGCGC CTGAT GCGCG               TTTGTTTTGCCCTAT  64 17
         fre  143597 ..  143615 +   -11   -3.4252   TGGCAAACCATGCCC             GATGCGAC GCT GTCGCGTC             TTATCGTGCCTACAA  83 123
SH03_RS00715 NONE
SH03_RS00720 NONE
SH03_RS00725 NONE
        hemG  151534 ..  151552 +  -5.8   -3.4072   GAACAACGGCAAACA             CGCCGCCG GGT CAGCGGGG             TTCTCCTGAGAACTC  59 135
SH03_RS00735 NONE
SH03_RS00740  153491 ..  153503 +  -6.3  -3.57309   CTCAGGCCTACCAAA                TTTGC ACG GCAAA                TTTGAAGAGGTTTTA  63 28
SH03_RS00745  153633 ..  153666 +  -6.7  -4.49756   ATTAAATAAAAAATA     CTTCAGAGTGTACCT GCAA AGGTTCACTGCGAAG      TTTTGCTCTTTAAAA  76 52
SH03_RS00750  156699 ..  156709 +  -4.6  -4.11484   GGCTTAACCTTACAA                 CGCC GAA GGTG                 TTTTGGCGGATTGAG  63 12
SH03_RS00755  156908 ..  156957 + -24.7  -4.09117   GGAACTGCCAGGCAT CAAATAAAACGAAAGGCTCAGTC GGAA GACTGGGCCTTTCGTTTTATCTG TTGTTTGTCGGTGAA 100 28
SH03_RS00770  158659 ..  158669 +    -4  -4.12188   AATGATATCCTTCGT                 CATT CGT AATG                 TTTTCCGGATGATGG  61 75
SH03_RS00775 NONE
SH03_RS00780  160336 ..  160355 + -13.6  -6.01369   TGTAAATTACATAAA            GCCCGTGA ATAT TCACGGGC             TTTTTTTATTATTTA 100 46
SH03_RS00785  161934 ..  161944 +    -4  -3.80174   CTCATTCAGAGGCGA                 GTAA AAC TTAC                 TTATTCTGACGCTGT  57 59
SH03_RS00800  166246 ..  166271 + -19.1   -5.4505   GCTGAATATTTTAGC         CGCCCCAGTCA GTAA TGACTGGGGCG          TTTTTTATTGGGCGA 100 248
SH03_RS00810  168141 ..  168152 +  -3.6  -3.44051   AACGGATTGCCGCCG                TGGG CCTT CCCG                 TTCTGCTGATAACCC  51 39
SH03_RS00815  169814 ..  169869 +   -17  -3.21924   TTGTAGGCCGGATAA GGCGTTTA-CGCCGCATCAGGCATC TGAGCAT GATGCCTGATGCGGCGCTGGTCGCG TCTTATCAGGCCTAC 100 150
SH03_RS00845  176525 ..  176542 + -11.3     -6.13   TTTAGTCATAAAAAA             CCTGCCA GCGA TGGCAGG              TTTTTTTTTGCCTGT 100 49
SH03_RS00850 NONE
SH03_RS00855 NONE
SH03_RS00860  179834 ..  179865 +   -10  -2.75844   ACCGTATCAACCGTA      GGCCGGATAAGGCG TTTA CGCCGCATCCGGCA       GTTTCACATCAGAAG  72 76
SH03_RS00905 NONE
SH03_RS00910 NONE
SH03_RS00915 NONE
SH03_RS00920 NONE
SH03_RS00925 NONE
SH03_RS00930  194718 ..  194737 +  -7.8  -2.74756   AGAGTAGCTGATGGA            GAGGGGCG GTGC TGCCTCTC             TCATTCAGGTCATTT  61 34
SH03_RS00935  195775 ..  195796 +  -4.5  -3.12351   TGTAAGGAGCATAAG           GAATGACAA AAAT TTTTCATTC            TTGAATATAAAAAAC  51 20
SH03_RS00940  196282 ..  196311 + -10.7  -3.30124   GCTGACAACGTGCGC       GTTGTTCATGCCG GATG CGGCGTGAACGCC        TTATCCGGCCTACAA  76 67
SH03_RS00975  203127 ..  203161 +  -9.4   -3.5782   AGCAATTAATTAAAA     TAAGTCCTGCGAAATA TAT TAAATTGCAGGACTTA     TTCATTTCGTGAATT  78 32
SH03_RS00980  204661 ..  204691 +    -6  -2.70946   TCACCTTCGCCTTCG       CGGGCGATGATGCG TTG TGCTTCATCGGCGG       TAATATGGTGTTGTG  51 358
SH03_RS01025  213929 ..  213942 +  -3.9  -3.59979   ACGTTTTTTACGTGG               TTTTC CGTC GAAAA                TTTAAGGTAAGAACC  53 7
SH03_RS01030 NONE
SH03_RS01035  215838 ..  215848 +  -6.8  -2.66106   CTCAACACCGTTACC                 GGAC GGC GTCC                 TGCATTGTTCCACTC  52 98
SH03_RS01045  217759 ..  217777 + -12.4  -5.67063   AGCTTAAAAAATGAA             CCATCGCC AAC GGCGGTGG             TTTTTTTGTGATCAA 100 83
SH03_RS01055  218968 ..  218991 + -13.2  -3.94853   CCTTAATCCCCACAG          CCGGATGAAC TAAC GTTCGTCCGG           TTTGCTATTGAGTTC 100 49
SH03_RS01060  219837 ..  219848 +  -7.2   -3.4252   TCAAATGCCGGATGC                GGCG TAAA CGCC                 TTATCCTGCCTGCAA  66 95
        cpxP  222632 ..  222650 + -14.6   -5.9873   CACCATCCCTGTCTT             CCCCCACA TGC TGTGGGGG             TTTTTTTTATCCTCA 100 66
        fieF NONE
SH03_RS01085  224971 ..  224987 +  -9.4   -4.7497   TTGTCAGCAATATGA              GGCGGA TTTCT TCCGCC              TTTTTAATCCCTCAA 100 211
SH03_RS01090  226117 ..  226139 +  -6.9  -5.72622   AGGATAATTATCAAA           CCCGGTGGT TTCTC GCGACCGGG           TTTTTTATTTGTCAC 100 48
SH03_RS01095  227308 ..  227321 +  -2.3  -4.18197   CGCACCTTCGAATGC               CGCAG CACC CTGAG                TTTTCAGTACCGCGT  58 377
SH03_RS01110  229054 ..  229101 +   -16  -2.84566   CTCTTACTGCTATTT TTTTCCGGG-ATTGTTATTTCCA CGA TGCAAATGACAATACCCGGAAAA TCCTTCTGAACTCTT 100 53
SH03_RS01115 NONE
SH03_RS01120  230023 ..  230063 + -10.3  -3.35224   GCTCCGCTGTCATAT  GGCCCGGTCGGCGACGTAA ATG TTTCGTCATCTGCCGGGTC  TCTTTCAGCAACTGT  72 56
SH03_RS01145  235093 ..  235108 + -10.4   -4.3953   GTAACGCAGAAAAAA              GGCACC TTGC GGTGCC               TTTCTTATCATTCAA 100 87
        rpmE  243516 ..  243529 +  -9.5  -5.64274   GGATTTCCGAAAAAA               GCGCC GCAC GGCGC                TTTTTTTGTGCCTGA 100 45
SH03_RS01200 NONE
        metL  248687 ..  248709 +   -12  -5.42605   AGTTTATATTTGCAG           TCCGGTTTGC TTT GCATACCGGA           TTTTCTTTTTCTTAC 100 176
        metF  249850 ..  249888 + -10.4  -2.60392   GCTGCCTCGAAATGA   GGGCGGGAAAATAAGGTT ATC AGCCTTGTTTTCTCCCTC   ATTACTTGAAGGATA  74 100
SH03_RS01220  252293 ..  252326 + -19.7   -3.9122   GCTGTAATCTGACCC     CGTTCAGCGGCTGCT TGCT GGCAGTCGCTGAACG      TTCTTTACCAGCGTA 100 34
SH03_RS01225  253560 ..  253594 +  -3.5  -3.80083   AGGTTTCCAGATTAG    GCACCC-GACGGTGAT CGAT GTTGCTGTCCGGGCGC     TTTAACTTCCATTTT  56 303
SH03_RS01255 NONE
SH03_RS01260  260222 ..  260239 + -10.5  -3.27525   CGCTTAAGTTCTTCT             CCCGCTC GCAA GGGCGGG              TTCGCTTTCCCACAG  78 34
        pflD NONE
SH03_RS01270 NONE
SH03_RS01275  264239 ..  264263 +  -6.3  -4.52347   TATGCGTGGGCCGCG          TCGGGCGACGT GTT GCTTCGCCAGA          TTTTGATATTGTTTG  74 516
SH03_RS01305 NONE
SH03_RS01310  273067 ..  273090 +  -5.2  -3.28001   AGCTTAAGTTTTGTT          GGCCGG-AGGC GCA GCTTTCCGGCA          TTGAATTTCAAAATA  55 34
SH03_RS01315  274517 ..  274535 +  -9.5  -5.24129   TATGTATAAATTTGA             GCCTGGC TTATC GCCGGGC             TTTTTTATGGCAAAA 100 50
SH03_RS01320  275845 ..  275867 +  -5.7  -4.11216   AATACCCAGAATCTC           TTTTGTTTC CCGAT GGAACAAAA           TTTTCAGCGTGCCCA  65 194
SH03_RS01330 NONE
SH03_RS01335  278405 ..  278436 + -11.6  -4.41494   TGCTGAGTAATCGGT      ATTATGCCGGATGC TGGC GCATCCGGCATGGG       TTTTACTTCGCGGTC 100 31
        btuB  281760 ..  281795 +   -14  -3.41125   CCTTCTGAACCACGT    CCCACCG-TGCTGGTGT TTG ACTCCGGCGTCGGTGGG    TTGTCGGTCTATGAC 100 33
SH03_RS01350  282660 ..  282678 +  -5.8   -3.4072   GAACAACGGCAAACA             CGCCGCCG GGT CAGCGGGG             TTCTCCTGAGAACTC  59 131
SH03_RS01355  284490 ..  284503 +  -2.3  -2.72471   AAGAAGCGTTCTTTG               CAGTG CTCA CACAG                ATTGTCTGATAGAAA  40 34
SH03_RS01360  284666 ..  284701 +    -7  -4.00532   AGTCACCTGCCTTAA    TATCTCAAAACTCATC TTCG GGTGATGTTTGAGATA     TTTGCTCTTTAAAAA  69 61
SH03_RS01365  287801 ..  287814 +  -2.4  -2.78679   AGAACGCAGAAGCGG               TCTG ATAAAA CAGA                ATTTGCCTGGCGGCA  41 84
SH03_RS01370  287938 ..  287987 + -24.7  -4.09117   GGAACTGCCAGGCAT CAAATAAAACGAAAGGCTCAGTC GAAA GACTGGGCCTTTCGTTTTATCTG TTGTTTGTCGGTGAA 100 28
        murB NONE
SH03_RS01380  290251 ..  290265 +    -5   -2.6472   GAGTATTCGCTCCCC               TGCAAA TTA TTTGCG               TAGTCTGACCTCTTC  48 48
SH03_RS01395 NONE
SH03_RS01400  291793 ..  291813 +  -2.5  -3.05816   GCTTACCGGCTCGAA            TAAAGAGAG CTT CTCTCGATA            TTCAGTGCAGAATGA  43 81
SH03_RS01405  291935 ..  291945 +  -3.2  -2.56596   CCCGCTCCAAGATGT                 GCTG ATA TAGC                 TCAGTTGGTAGAGCG  42 32
SH03_RS01410  292061 ..  292075 +  -7.8  -2.57944   TTGCATTCAACAAGT               CGGGCA TGT TGCCTG               GTTGATGTGGTGATA  60 76
         tuf  293333 ..  293372 + -13.6  -3.72576   AACATTTGACGCAAT  GCGCACTAAAAGGGCATC ATTT GATGCCCTTTTTGCACGC   TTTCGTACCAGAACC 100 49
        secE NONE
        nusG  294504 ..  294542 + -13.3   -4.8543   GCGATTTAATCGTTG   CACAAGGCGTGAGATTG GAATA CAATTTCGCGCCTTTTG   TTTTTATGGGCCTTG 100 60
SH03_RS01430 NONE
SH03_RS01435  295773 ..  295809 +  -6.6  -2.87136   AAACTAATGCCTTTA   CGTGGGCGGTGATTTTG TCTA CAATCTTACC-CCCACG    TATAATGCTTAATGC  57 34
        rplJ  296667 ..  296680 +  -3.8  -4.07746   GCGATGCGAAAGAAG               CTGC TTAATC GCAG                TTATCTTTTTAACGC  60 18
        rplL  297146 ..  297171 + -17.7  -4.64766   AGAAATCAGGCTGAT         GGCTGGTGACT TTTT AGTCACCAGCC          TTTTTGCGCTGTAAG 100 65
        rpoB  301474 ..  301501 + -15.6  -2.65298   CGCTCAAACAGGTCA        CTGCTGTCGGGT TAAA ACCCGGCAGCGG         ATTGTGCTAACTCCG 100 45
SH03_RS01455  305781 ..  305794 +  -9.5  -5.60993   CAAATAACGTAAAAA               CCCGC TTCG GCGGG                TTTTTTTATGGGGGG 100 52
SH03_RS01460  306512 ..  306527 + -10.4  -3.53343   CTCAAAATAACAAAA              CCCACC TTAA GGTGGG               TTTCGCCAGAGAATT  80 31
        nudC NONE
        hemE  314956 ..  314967 +  -2.2  -2.63382   TCTGAACAGTATCAC                CGCT AAGG AGTG                 ATTATGGATCTCGCG  40 20
SH03_RS01510  315656 ..  315668 +  -4.8  -3.35597   AATTCAGGTAAACTG                CGGA TAATT TCCG                TATTTGAGAACTCAA  53 39
SH03_RS01515  316396 ..  316408 +  -4.1  -3.65351   GTGTATGCAGGAGAG                TGCTA TTC TGGCA                TTTCCGTCGCACTCG  54 146
SH03_RS01520 NONE
SH03_RS01525  317683 ..  317694 +  -5.8  -3.57263   TCACCAGTTGCTGTT                GCAG TGCG CTGC                 TTTGAGCGTAAAAGT  60 266
SH03_RS01535 NONE
SH03_RS01540  321138 ..  321158 +  -3.3  -4.05788   AGCGCGTTCATCCCA           CTCGGACG TTTTCT CGTCC-AG            TTTGCTTTCACAGGC  58 337
SH03_RS01565  325890 ..  325903 +  -2.3  -2.72471   AAGAAGCGTTCTTTG               CAGTG CTCA CACAG                ATTGTCTGATAGAAA  40 34
SH03_RS01570  326066 ..  326101 +    -7  -4.00532   AGTCACCTGCCTTAA    TATCTCAAAACTCATC TTCG GGTGATGTTTGAGATA     TTTGCTCTTTAAAAA  69 61
SH03_RS01575  329132 ..  329142 +  -4.6  -4.11484   GGCTTAACCTTACAA                 CGCC GAA GGTG                 TTTTGGCGGATTGAG  63 12
SH03_RS01580  329354 ..  329374 + -11.8   -5.1287   ATCAAATTAGAAAAA            CCCCGGTC CATAA GGCCGGGG            TTTTTTGCATATCAA 100 41
SH03_RS01585  330121 ..  330131 +  -2.4  -2.70932   ACATAAATCCAACCG                 GCTG ATC CCGC                 TCATTAACCGCGACC  39 348
SH03_RS01595  331436 ..  331451 + -10.4  -5.63517   CAGCACCTTACCTCA              GGCACC TTCG GGTGCC               TTTTTTATTTCCGAA 100 71
SH03_RS01600 NONE
SH03_RS01605  334674 ..  334687 +  -8.1   -3.4252   CACGATGCCTGATGC               GACGC TTGC GCGTC                TTATCATGCCTACAG  68 105
        aceK  336757 ..  336769 +  -6.3  -4.04318   GATAAACCGTCTCTA                CAACA TTT TGTTG                TTTATGCTGTATCGC  68 269
        metH  343721 ..  343751 + -10.4  -4.29106   CACTTTTCCTTACAA       CAAACAGGGCGCTC AAT GAGTGCCCTGTCTC       TTTATTAATATGAAA 100 54
SH03_RS01630  345606 ..  345628 +  -7.7  -3.17075   GGCACTATGAACAAG           ATGCCGGAT CATGC ATCCGGCAA           TTCACTTAAAAACGG  63 88
SH03_RS01640  347551 ..  347562 +  -2.2  -3.44848   TGGATTAGCGCCTGC                CG-CG CGT CGACG                TATTTGCTGACCAGC  47 169
         pgi  351616 ..  351662 + -14.3   -2.5294   TGTAGGCCGGATAAG GCGTTCACGCCGCATCCGGCA ACCGA TGCCTGATGCGACGCGGTCGC GTCTTATCAGGCCTA  93 53
SH03_RS01670  353175 ..  353196 + -11.7  -3.32343   TGAAGGGATTAACCA           TAACCACAC TCCG GTGTGGTTA            TTCTGCCCCTCTGGA  86 94
SH03_RS01675 NONE
SH03_RS01680 NONE
SH03_RS01685  356700 ..  356727 +  -8.5  -3.56142   CTAAGTCATGGGAAA        GGTGCCAGT TTTCGCACTC ACTGGCACC         TTCATTCTTAATGGC  71 37
SH03_RS01695  357138 ..  357158 +  -5.4  -2.90714   CGCCGCCAGGCGCGG            CTTATCCG GCCTA CGGGTAGG            TATATCCGGCTTTGG  52 6
SH03_RS01700  357740 ..  357750 +  -2.4  -4.58419   TGGACAGGAAGATTA                 CAGC GTA GCAG                 TTTGTTGTGTTTTCT  63 72
SH03_RS01730  364880 ..  364890 +  -6.8  -2.62184   ACAAAACACACAAAG                 CCTG TCA CAGG                 TGATGTGAAAAAAGA  56 48
        lamB  366339 ..  366386 + -12.2  -3.53811   GATGCGACGCTTGCG CGTCTTATCAGGCCTACA ACGGCTGTCAAA TGTAGGCCGGATAAGGCG TTTACGCCGCATCCG  91 95
SH03_RS01740  367465 ..  367484 + -11.4  -5.71983   GATTTTGCAACAACT            GGTGCGTC TCCT GGCGCACC             TTTTTTTATGCTTCC 100 58
SH03_RS01745 NONE
SH03_RS01750  369355 ..  369365 +  -3.2  -3.66156   GTTTTACCACTTCAT                 GCGA TTG TTGC                 GTTTTTGTTGCGTAT  51 139
        ubiC NONE
        ubiA  370859 ..  370876 + -11.3  -4.35604   TGATGATGTAAAAAA             GCCGGAT GATC ATCCGGC              TTTCTTCTGGGTTGC 100 38
SH03_RS01770  373969 ..  373990 +  -2.4  -4.33851   TTTTGGATAACCCTT           CCAGA-ATT CGATA AATCTCTGG           TTTATTGTGCAGTTT  58 31
SH03_RS01775  374695 ..  374718 +   -16  -4.94262   AACATATCTCTGAGA          CCGCGATGCC GCCT GGCGTCGCGG           TTTGTTTTTCATCTC 100 39
SH03_RS01780  376138 ..  376158 +  -2.6  -2.69964   CTACACTTAATCTCA            CGTTCA GAAGAAAAG TGAACG            TACTCTCATTCACAA  41 84
SH03_RS01785  376716 ..  376728 +  -9.1  -3.28791   GAGCACATAACTGTT                GGTGG ATT CCACC                TTATGCACAAAACCT  69 337
SH03_RS01795 NONE
SH03_RS01800  378306 ..  378327 +  -9.5   -5.4251   AGGCATTATATAAAA           GGACCCAAT ATTT ATTGGGTTC            TTTTTTCTCTATCAA 100 67
SH03_RS01805  379695 ..  379718 + -13.1  -4.43681   TAGTCAAATTCACCA          CGCCCTGCG CACCGT CGCGGGGCG           TTTTGCTGTTAAATC 100 56
        pspG  380175 ..  380199 +   -10  -4.77775   CGAACTATAAAAAGA          AAGGGCTTCC CAGGT GGAAGCCCTA          TTTCTTTTATGGAAT 100 160
SH03_RS01820 NONE
         alr  383931 ..  383951 +  -3.9  -3.98661   TGCTCTTATAAAGGT            CGTGCCTCT GGC GGATGTACG            TTTGTCATGAGTCTC  58 137
SH03_RS01830  385515 ..  385527 +  -4.9  -2.78935   TCGGGTTTGTTACGA                TAGAA TAT TTCTA                TATCCTCAAGAATAT  46 275
        aphA  387086 ..  387120 +  -6.5  -5.52384   AATTCAGAATACTGA    CAG-A-GCGGGAGAGCG TGA TGCTCTCCCGAATGCTG    TTTTTTTAATCACAC  91 26
SH03_RS01845 NONE
SH03_RS01850  388029 ..  388061 +  -4.8  -2.93393   ATCGGCTTAAGGAAG     CGT-GCCGTGTGTGA TGCT TCGCACTCCGCGACG      GTTTCTGGCGTACCG  50 82
SH03_RS01860  391692 ..  391708 + -10.1  -3.39505   AGCCATAAAAAAGAA              GCCTCCG TTA TGGAGGC              TTCTACGTATCAGGT  76 98
SH03_RS01870  394172 ..  394196 +  -6.5  -2.80816   GCCAGTAACAGGCGG         CG-TTGGCGA ATGTAA TCGCCAAGCG          TCTGATGCGTCACCG  51 182
SH03_RS01880  394888 ..  394912 + -14.4  -4.67651   GGAAGATGAACAAAA          CTAAAGCGCC ACAAG GGCGCTTTAG          TTTGTTTTCCGGTCT 100 22
SH03_RS01885  396802 ..  396833 + -12.4  -4.37658   TCTTTCATCGGATTC      TGAAAACGGGTGGC AATG GCTGCCCGTTTTTA       TTTTCTCCGCACATT 100 41
SH03_RS01890  398628 ..  398645 +  -9.9   -3.5774   AGGTAATCTGAAAAA             GGTGCAA TCTT TTGCACC              TTTAACAGGTTAGCT  80 66
        nrfA NONE
SH03_RS01920 NONE
SH03_RS01925 NONE
SH03_RS01930  408431 ..  408444 +  -2.3  -2.98304   GTATTCCTTCCTGAA               GTCGG TTTT CTGGC                GTTGTTGTTAAGTCT  42 66
SH03_RS01935 NONE
SH03_RS01940 NONE
SH03_RS01945  411211 ..  411223 +  -3.4  -3.84246   CAAATAAAAATCTTT                CCAT AACAA ATGG                TTATTCATTAATCCT  53 139
SH03_RS01950  413244 ..  413278 + -10.7  -3.08867   CGCATCCGACATCAA     TGCCTGATGCGACGC TTGCC GCGTCTTATCAGGCC     TATCTTAACCGTTGG  79 517
SH03_RS02025 NONE
SH03_RS02030  431477 ..  431489 +  -6.2  -3.53811   GACAGCCACGCCACC                CGGC TGTGT GCCG                TTTCCAGCAGATAAC  58 458
SH03_RS02115 NONE
SH03_RS02120  447188 ..  447246 +  -3.2  -3.62522   AACTGCCCAATTCAG GCGTCAACTGGTTTGATTGTACATTCC TTAACC GGAGGGTGTAAGCAAACCCGCT-ACGC TTGTTACAGAGATTG  51 128
SH03_RS02125  448896 ..  448912 +    -3  -2.58999   TCTTATCAGGCCAAT              TGAACT CTTAA GGTTCA              CTTAATCTCTGACGC  42 70
SH03_RS02130  449083 ..  449100 +  -6.3  -4.07568   ACCCAGGCCCGCGTG             CCGG-AAG TCT CTTGCCGG             TTTTGCAGGAAAAAC  68 56
SH03_RS02170  458657 ..  458669 +  -3.3  -3.88291   TTTACTGCTGCTTCA                CGCAG GAT CTGAG                TTTATGGGAATGCTC  53 14
SH03_RS02175 NONE
SH03_RS02180  461659 ..  461689 +  -3.3  -2.52519   CAATAGCTAACGAAA       ATGGCCTGATG CGATATGTT TATCAGGCCAC       GTCTTAATGTAATGC  42 47
SH03_RS02200  466386 ..  466410 +  -4.9  -4.07568   TCCACTGGCACAGTG          TGCGTAACGTC TGC GGCGTTAAGCC          TTTTGGCAAGCGACG  62 226
SH03_RS02215 NONE
SH03_RS02220 NONE
SH03_RS02225  469494 ..  469521 +  -6.4  -2.98491   CCATCATCTTATTCC        TCAGTGTTCTTA AGAT TAAGATCATTGA         TGTATGATATGAATT  56 13
SH03_RS02230 NONE
SH03_RS02235  470007 ..  470030 + -15.4  -3.35813   TTGCGGAACGATGAA          CGAAGCAGTC GCCT GACTGCTTCG           TTCATTAAAGTGAAA 100 104
        fxsA  485996 ..  486028 +  -4.8   -5.0925   GGATTAATGTCGAAA      CGCCGGATTATG TGGTTATGC CATTTTCCGGCG      TTTTTCGTTTTGGCA  80 34
       groES NONE
       groEL  489548 ..  489571 + -12.4  -5.50723   GCAGAAATAAACAAA          CCCCCGGGCA GAAA TGTCTGGGGG           TTTTTCTTTTGGTCA 100 55
SH03_RS02315  490386 ..  490397 +  -5.8  -4.02911   GAAATCAAGCATTCG                GCGA GTGA TCGC                 TTCTATTTCTTTACC  68 402
SH03_RS02330  493117 ..  493148 +   -13  -3.65046   GCGTGAAGTAATGCG      GTTGTGGTGCGGCC TGCA GGCTGCACCATCAC       TTATTCAGGTCAGAG 100 30
SH03_RS02335  493273 ..  493285 +  -3.3   -2.6432   TCGGCAACTCCATCT                CTCGC GCT GCCAG                CTAATTTTTCTTCTC  42 9
SH03_RS02340  493550 ..  493581 +    -8  -5.26316   GCGCAGCAATAAGCA      ATAACGGTACGACA GCTG TGTCGTGCCGTTTG       TTTTTTCTGCGATAG 100 29
SH03_RS02345  494320 ..  494330 +  -3.2  -3.42197   TCTGCTGCCACATTC                 CTCT GTC AGGG                 TTATAGCCTTTATTA  49 306
SH03_RS02380  500613 ..  500639 +  -7.3  -3.05596   GTATTGGTTTTTACG        CTGC-CTGCTCA ATGT TGCGCAGTGCAG         TTCAGTGGGCACGTG  61 171
SH03_RS02385  502175 ..  502198 +  -3.7   -2.8655   CAAAAAATCCGCAGT          GGGCGGTGG AATAAC CCGATGCCC           TATCGTCTACCTGAC  45 12
SH03_RS02390 NONE
SH03_RS02395  503219 ..  503232 +  -5.9  -2.78384   TCTTCGCTATTGGCA               TCGGC AGGG GCCGG                TATCGTCAACACCAC  51 379
SH03_RS02415  509039 ..  509053 +  -4.2  -2.53759   AATCCACTTGCGGCG               GCGTGA TTT TGACGC               TAAATTGAACGTCTT  45 68
SH03_RS02420 NONE
SH03_RS02425 NONE
SH03_RS02430  509528 ..  509555 +  -3.4  -5.27206   CTCTCAATAAAATAT        CCA-CAGCGACGC GAT GCGTTATTGCTGG        TTTTTGTTGTCTCTG  79 48
SH03_RS02440 NONE
SH03_RS02445 NONE
SH03_RS02450 NONE
SH03_RS02455 NONE
        miaA NONE
         hfq  517464 ..  517496 +  -7.1  -2.54504   CGGGCTGTTTTTTTA     CA-CGGGGAGC-CAG CGATC CTGCGTTCCCCGCTG     ATCTATTTAGAGGGT  58 46
SH03_RS02470 NONE
SH03_RS02475 NONE
SH03_RS02480  521181 ..  521207 + -13.1  -5.38839   TACAGGTCAATAAAG        CCACCG-CATCC TCAG GGATGTCGGTGG         TTTTCTTTTTCTATA 100 55
SH03_RS02485 NONE
SH03_RS02490  522887 ..  522921 + -11.6  -3.10975   CAGTGTGATACATTG    CTGTGTCGGGTAAGC CATTAC GCT-ATCCGACACAG     TGTTAAATCCTCGCT  84 80
SH03_RS02495 NONE
SH03_RS02500  525949 ..  525968 +  -8.6  -3.20723   GCAGAGTGATCAATA            CCCTCTTT AAAA GAAGAGGG             TTAGATTGCTGACAA  67 32
SH03_RS02505  526874 ..  526891 +  -9.9  -6.32216   CAGAATTATGAAAAG             CCATCCA GATT TGGATGG              TTTTTTTTTGTCTAT 100 46
SH03_RS02510 NONE
SH03_RS02515  528104 ..  528130 + -12.4  -2.79004   GGGCGAGTAATTTTT         TTGCCAGCCT CGCTAAA AGGCTGGCAA         CTATTTTAAGGATAA  89 31
SH03_RS02520 NONE
SH03_RS02525 NONE
SH03_RS02530 NONE
SH03_RS02535  531074 ..  531103 + -13.7  -3.14132   TCTGTCATGAATCCA       TGGCAGTGACCAT ACTA ATGGTGACTGCCA        TTGATGGAGGGAGAC 100 61
SH03_RS02540  533108 ..  533150 +  -3.5  -4.98531   GGATAAGTCACTAAT TGCAGC-GAGGGTGAGGCAA GTAA TTGTTTCATCGTCAGCTCCA TTTTTCGTTTCCCCA  76 386
SH03_RS02555  535033 ..  535045 +  -4.7  -3.57792   CGCCCGGATTAACCA                GCTGC GAG GCCGC                TTTAGCGATACGTAC  55 510
SH03_RS02570  538217 ..  538231 +  -2.8  -4.48987   AACTGGCAGAACAGT               CTGCTT AAT AAGGAG               TTTTGATTATGACCG  61 18
SH03_RS02575 NONE
SH03_RS02580 NONE
        ulaD NONE
SH03_RS02590 NONE
        araD  541441 ..  541453 +  -9.1  -3.46435   TACGTGGTAGTACGT                TGCGC CTT GCGCA                TCTGTTTCTTCATTT  71 233
SH03_RS02605  541827 ..  541837 +  -2.4  -3.27525   AGGGGAGATTTATTT                 CGGC TCT GCCC                 TTGAGTTTAGCGAGG  45 11
        rpsF NONE
SH03_RS02615 NONE
        rpsR  542916 ..  542926 +  -2.4  -2.50307   TCGCCATCAGTAATC                 GGTC ACG GTCC                 ATTAATACGACTTTG  39 28
        rplI  543425 ..  543453 + -16.1  -3.33352   TATTCAACGAGACGT        AAAAACGCCGACC ATT GGTCGGCGTTTTG        CTTTCTATTTTTCGT 100 46
SH03_RS02635  545005 ..  545035 +  -7.4  -4.13014   GTATCAATGGTTAAG       CCCGTCACCACGCC GCT GGCGTTCTGGCGGA       TTTTCACCATCTGCC  74 88
SH03_RS02645  546581 ..  546591 +    -4   -3.1372   AAATTAACATTAGAT                 CTAA ATC TTAG                 TATTCATCCCGCGTA  49 204
SH03_RS02650  548136 ..  548160 + -16.5  -4.19817   TAACCGCATTATCAT          GCTGGATGGCG CAA TGCCATCCAGC          TTTTAGATCACTCAC 100 38
SH03_RS02670  551410 ..  551436 + -12.3  -2.60798   AAGATGCGCCAGCAT         CGCATCCGCCA ATAAA TGCCGGATGCG         GTTGATGATTTATAG  88 95
SH03_RS02680  554345 ..  554387 + -10.1  -3.86346   GTCTATTTACTAAAT TCA-GATGGCAGAAACAG TGTATTTC CTGATTCTGCCATCCTGA TTTCTCCCAACCTAA  84 28
SH03_RS02685  555493 ..  555523 +    -7  -2.53831   AACTCAGAGACTTAA       TTCCCCTATC CCATAGATAAC GATAGGGGAA       AATTATTTTTGCAGA  55 26
SH03_RS02695  556682 ..  556702 + -16.9  -3.50335   TATGCAGTAATAAGA            CGGCTCCTG ATT CAGGAGCCG            TTGATGTTTCTGGGG 100 67
SH03_RS02710 NONE
SH03_RS02715  560944 ..  560955 +  -4.4  -2.69546   ACAGTTTTACATCGG                TCTG GGGC CAGA                 ATTATGAGTTTATGG  45 7
SH03_RS02720 NONE
SH03_RS02725  565090 ..  565114 + -10.8  -5.00616   ATAAGTAACCATATG         CATACGCCACC TTCG GGTGGCGT-TG          TTTTTTGCGAGACGA 100 33
SH03_RS02730 NONE
SH03_RS02735  566195 ..  566213 +  -5.2  -4.07568   ACCAGTTTCGCATCT             TCACCGGC TTC GTCGGTCA             TTTTCAGAACGCCAA  65 331
SH03_RS02745  567848 ..  567862 +  -7.1  -3.42996   ACTGAAGCCTGATGC               GACGC TTACC GCGTC               TTATCATGCCTACTG  66 108
SH03_RS02750 NONE
SH03_RS02755 NONE
SH03_RS02760  571816 ..  571835 +  -6.5  -3.40371   TTCTTCACCCCGTTC            GGAAACT TAATGT AGTTTCC             TTCGTTGATGGAGTA  56 416
SH03_RS02770  574036 ..  574065 + -13.5  -2.74792   ATATAGTATGCGTAG       GCCGGATAAGGCG TTCA CGCCGCATCCGGC        ATTTGAGCATAGTGC  93 56
        pmbA NONE
SH03_RS02785  576710 ..  576743 + -14.7   -3.4072   ATCGTTAATTCCTCA     TTTCCCTGTTGCCTG CACT CAGGTAACAGGGAAC      TTATCATCGCAAATG 100 33
SH03_RS02815  587342 ..  587361 + -10.7  -3.65827   TGTCATCAGACTTAA            TCCGGGC ATGATA GCCCGGA             TTTCCATCAAGATTA  84 199
SH03_RS02840  590142 ..  590167 +  -6.1  -2.60723   CGTGAGTAAACAAAA         CCCAGACATCA TGGA TAATGGCTGGG          CTTAATTGAGCGTAG  54 475
SH03_RS02855 NONE
SH03_RS02860  592168 ..  592199 +  -7.4  -3.85698   ATGGCGTGATGACTT      TTCGCCGTAAAT AACTCAAG GTTTACGGCGAG       TTTGTGAAAAGAGCG  70 32
SH03_RS02865  594107 ..  594137 +  -9.8  -3.87815   TGCATAAAATAATGT       GATGCCGGGA TGGTTTGTATT TCCCGGCATC       TTTATAGCGATAGCA  84 34
SH03_RS02875  595851 ..  595875 + -15.7  -5.47399   TTGTTAATGTTCGAA          TGCCCGCGAGT TGA ACACGCGGGCA          TTTTTTTAGAGTTCG 100 140
SH03_RS02885  597785 ..  597804 +   -15  -3.72073   GTAAGAGATAAAAAA            GGCCGGAG CATG CTCCGGCC             TTCGTTTTCATCACT 100 37
SH03_RS02905 NONE
SH03_RS02910  605261 ..  605284 +   -14   -3.9461   AACCGAATGAACGAA          TAAAGGGAGC GAAA GCTCCCTTTA           TTATTGTTAGCAAAG 100 39
        idnK  612386 ..  612401 +  -6.8  -3.05562   GCCAGTGCTTTCAGT              GCCTGCG GAT CGC-GGC              TATTCACCACTTTAT  56 378
SH03_RS02950  613351 ..  613366 +    -9  -5.64274   AAAAGTATGTAAATA              GACCTC AACT GAGGTC               TTTTTTTATGCCTGA 100 40
SH03_RS02955  614791 ..  614810 +   -15  -2.88832   TTAAAACAGTAATCA            TCCCGGGC AAAT GCCCGGGA             ATTATTCTAGGATTA 100 29
SH03_RS02965 NONE
SH03_RS02970  616537 ..  616548 +  -2.2  -3.06501   GGTTAGTTATCTTCG                TCTG TCAG CGGA                 TTGAATGGCGGTATA  42 215
SH03_RS02985  618065 ..  618083 +  -5.3  -3.53343   GCCCGCATAACCCGT             TGACTTC CTGAA GAAGTCG             TTTCAGGGAGAGATT  57 15
SH03_RS02990  618441 ..  618456 +  -5.4  -3.85698   TCTTCGGGTAAGTGA              TACCTG CCGT CAGGTG               TTTGTGCACCGGGCC  61 116
SH03_RS02995  618939 ..  618968 +  -9.3  -4.59109   CATCTTGGTTCTGTA       ATGCCAGTCAGTT AAGC AACTGACTGGCTC        TTTTTCGGGGCTGTG 100 42
SH03_RS03005 NONE
SH03_RS03010  623261 ..  623286 +  -5.4  -4.62984   AATGTAAAAACTATA         CGCCTCTTGA TTTAAT TCAGGAGGCC          TTTTATGTATGATCA  73 34
SH03_RS03020 NONE
SH03_RS03025  624602 ..  624630 +    -4  -3.91897   TCCCATGTCAGTGAT        TTTCTGAGTT CTGACGGTA AACTCAGGAA        TTTGTCGGTAAGAGC  59 317
SH03_RS03040  626717 ..  626727 +  -5.4  -2.94695   CCAGCCGCAGTACAG                 GTCA CGA TGAC                 TCTGGTTAATGATAC  52 102
SH03_RS03045  627171 ..  627193 +  -6.2  -5.21709   ACCAGCTCCGTGAAT           GTCCGCTCTG GCA CAGAGCGAAA           TTTTTTGATCTCCCC  87 216
SH03_RS22865  635839 ..  635853 +  -7.8  -2.64616   TTCTGAGCCTGCTGT               CGGCCT TTG AGGTCG               TGGTATAGATGACGG  60 3
SH03_RS03095  636149 ..  636172 + -12.5  -3.95647   CTAATCAATAAAATC          CTGCCCCAT ATCTAC ATGGGGCAG           TTGTTCATTCTTTTA 100 103
SH03_RS03185 NONE
SH03_RS03190  653305 ..  653315 +  -4.6  -4.63542   AATAACAACGGTTTA                 TGCG GTG CGCG                 TTTTTCACCCTTGTG  71 452
SH03_RS03210  656928 ..  656938 +    -4   -4.7878   AAAAACTAAAGATCT                 TAGT TTA ACTA                 TTTGTTTTATAAATA  71 87
SH03_RS03220  658769 ..  658798 + -10.9  -5.10064   TTAATGTAATTGACT       GATAGCCACATCAC TCC GTG-TGTGGTTATC       TTTTTATCTATTGGG 100 388
SH03_RS03225 NONE
SH03_RS03230  660691 ..  660705 +  -2.8  -2.75536   ACAAAGTGTACAGAA               CGAC TGCCCAT GTCG               ATTTAGAAATAGTTT  42 460
        fimA  661382 ..  661395 +  -3.1  -3.83026   TATTTCTATTAGCGT               CGTTG CTGC CAATG                TTTGCTCTGGCCGGA  53 121
SH03_RS03245 NONE
SH03_RS03250 NONE
SH03_RS03255 NONE
SH03_RS03260 NONE
SH03_RS03265 NONE
SH03_RS03270  667542 ..  667568 + -14.4  -3.10537   AGACTTTGTCATCAG         TCTGAGCCTGCC ATT GGCAGGCTCTGG         TGTCCTTTTACGCTA 100 234
SH03_RS03280 NONE
SH03_RS03285  670450 ..  670474 +   -15  -3.58329   AGCCGTTAATATCCA          CCGGCATGGC TGCGC GCCGTGCCGG          TTCCTTCTTCCTTGC 100 32
SH03_RS03290  672009 ..  672040 + -12.5  -4.94243   TACCCTACAGACTTA      CTGGTCAATCAAA CTGATA TTTGGTTGACCAG       TTTTCGTTTTTTTGC 100 50
SH03_RS03300  672986 ..  673010 +  -9.3   -4.2528   GACTTATTATAATAA          GCGCAAGGG TAAACGT TCCTTGCGC          TTTCTTAAATTAAGA  88 39
SH03_RS03320 NONE
        iraD  675096 ..  675118 +  -4.1  -3.05384   ATGCATAGGCCTGAA           TCGGGATCA CCAGT TCGTCCCGA           TTCAGTACAACGAGC  46 113
SH03_RS03350  679202 ..  679221 +  -5.6  -3.16676   GCCGCGCCGCAGAGA            GTGGCGCT GGCA AGCGCCGA             TGTTCCATTGCTGAG  52 120
SH03_RS03390  687673 ..  687686 +  -5.3  -2.60723   GGCATCCGGCATGAA               CAAAG CGTA CTTTG                CTTAATTCAGGCTGG  49 157
SH03_RS03400  689683 ..  689719 + -11.2  -2.64981   CTCATGTCGATAACG   GTCAAAAAACGCACAGT GATT ACT-TGTGTTTTTTGAC    TGACTTTACAACTCT  76 170
SH03_RS03405  691734 ..  691754 +  -5.4  -3.08197   CACGGTACACCGCTC            GACAAAGG CTGGC CCTTTGGC            TATGTGTATGTGAAC  53 205
SH03_RS03410  694484 ..  694514 + -11.8  -4.53705   CGCCTCCTGATGATG       AGCCGCTCCCGATG TGG TGTCGGGAGCGGTA       TTTTCTATAAAACTT 100 31
SH03_RS03450 NONE
SH03_RS03455  707665 ..  707675 +  -2.4  -4.18018   GTTTATCCGCCGACT                 CCAG CAG CAGG                 TTTTCCATCACGCGG  58 280
SH03_RS03480  712969 ..  712990 +  -5.8  -2.77899   TACGCCAGTGCCCCC           GCTGCGGT GACGCA ACCGCAGA            TGATTAGTGCCAGAC  51 135
SH03_RS03495  716587 ..  716613 +  -5.8  -6.32017   ATTAAAGTTGCCATG         CAGCGTCCGG GGAAGTG TTGGGCGCTG         TTTTTTTTGTTTCTT 100 53
SH03_RS03530 NONE
SH03_RS03535  724544 ..  724555 +  -2.2  -4.36914   GTGGATTATCTTCAC                CGTT CGTG AGCG                 TTTTCTCAAAAAAGA  60 185
SH03_RS03545  725959 ..  725971 +  -4.9  -3.14132   TTCGCATACCATCAA                TTCTT AAA AAGAA                TTGCTACCACGGAGG  51 397
SH03_RS03570 NONE
        rimI NONE
SH03_RS03580  728926 ..  728940 +  -9.2  -3.14132   TCGTTTTCAACAAGC               GCGGCG CGA TGCCGC               TTACTCAAGAAGAAA  72 81
        prfC  730561 ..  730586 + -14.7  -2.68338   ATTAATTCTTGCCTC         CAGGGCGCGGT AGCC GCTGCGCCCTG          TCAATTTCCCTTCCT 100 36
SH03_RS03590  731618 ..  731632 +  -4.2  -2.62396   TAAAAATATCGCATT               GAGTGA TTT TCACGC               TCATATCAAGCGGTG  45 95
SH03_RS03595  731868 ..  731886 + -14.6  -4.28049   AAAATTTTATCCAAA             GCCAGTCC AGC GGACTGGC             TTTTGCGGTTTTAGC 100 57
SH03_RS03600 NONE
SH03_RS03605  733926 ..  733965 + -11.5  -2.62003   CGGATAAGGCGTTCA  CGCCGCATCCGGCAGTTG GCGCA CAA-TGCCTGATGCGACG  CTTGTCGCGTCTTAT  80 144
SH03_RS03620  736829 ..  736839 +  -3.2   -3.3761   AGAATACTAACAAAC                 TCGC AAG GTGA                 ATTTTATTGGCGACA  47 89
SH03_RS03625 NONE
SH03_RS03630  739107 ..  739117 +    -4  -3.84451   CGAATAACGGTATAC                 TGAT CTG ATCA                 TTTAAATTTGAAGCA  57 34
SH03_RS03635  740382 ..  740401 + -10.7  -4.38927   GTTCTGATGGATTTG            GGCGGAG CGTTGA CTCCGCC             TTTGTTATGTCACAA 100 34
        deoD  741183 ..  741206 +   -16  -4.87037   CGATTGCCTTGTGAA          GCCGGAGCGG GAGA CTGCTCCGGC           TTTTTAGTATCTATT 100 59
SH03_RS03645  742627 ..  742648 + -12.3  -2.52464   CAAATCGAAGAGAAA           GTTGCCCGC ATGG GCGGGTAAC            TACCTTACAGCCCCC  86 5
        serB NONE
SH03_RS03665 NONE
SH03_RS03670 NONE
SH03_RS03675  748362 ..  748391 + -13.5  -3.08581   TTGCTGGTTTTGTAG       GCCGGATAAGGCG TTCG CGCCGCATCCGGC        ATTTTACGCATTACT 100 92
SH03_RS03685  752228 ..  752244 +  -4.5  -2.61144   ACTGATCCGCACGTT              TATGATA TGC TATCGTA              CTCTTTAGCGAGTAC  48 36
SH03_RS03690  753126 ..  753141 +  -8.2  -3.76224   TTGGCTACCCGATTT              CGTGCG CCAG CGCGCG               TTTCCTCACTGCCAA  72 518
SH03_RS03700  754261 ..  754273 +  -6.3   -3.1829   CTGGGCTAACGCGGT                GGTAT AGA ATACC                TCTTGCTCGTCGTCT  54 295
SH03_RS03710 NONE
SH03_RS03715 NONE
SH03_RS03720 NONE
SH03_RS03725  759094 ..  759111 + -12.7  -5.76949   GTTGAAAAATAAAAA             CGGCGCT AAAA AGCGCCG              TTTTTTTTGACGGTG 100 42
SH03_RS03735  760279 ..  760289 +  -2.6   -3.4252   ATTGTCGAGATTTAT                 TTTT TAT AAAA                 TTATCCTAAGTAAAC  48 215
SH03_RS03740  761306 ..  761327 +  -4.5  -2.91322   TGAGTAAATTAAAAT           TTTATTGAC TTAG GTCACTAAA            TACTTTAACCAATAT  50 156
        thrL  761479 ..  761500 +   -13  -6.06723   GAAACACAGAAAAAA           GCCCGCAC CTGACA GTGCGGGC            TTTTTTTTTCGACCA 100 41
        thrA NONE
SH03_RS03755 NONE
SH03_RS03760  766243 ..  766269 +    -8  -5.24129   CATTATCTCAATCAG        GCCGGGTTTGC TTTTAT GCAG-CCCGGC         TTTTTTATGAAGAAA  95 49
SH03_RS03765 NONE
SH03_RS03770  766763 ..  766796 + -11.7  -2.62043   CAATCCGGCATTCAG     CGCCTGATGCGACGC TGGC GCGTCTTATCAGGCC      TACGTTAATTCTGCA  80 59
SH03_RS03785  770397 ..  770426 + -12.9   -2.5294   CTGCTGTAATCATTC       TTAGCGTGACCGG GAAG TCGGTCACGCTAC        CTCTTCTGAAGCCTG  90 32
        mogA  771158 ..  771172 +  -4.2  -3.13164   ATCGGCAGAACGGTG               CGACCA AAC TGCTCG               TTCAGTACTTCACCC  47 91
        dnaK  775304 ..  775341 + -17.1  -3.25823   AACGGGTAATTATAC   TGACACGGGCGAAGGGGA ATT TCCTCTCCGCCCGTG-CA   TTCATCTAGGGGCAA 100 51
SH03_RS03815  776587 ..  776608 +  -4.4  -3.52073   GTGGCGGGGATCACT           CCCATAAG CGCTAA CTTAAGGG            TTGTGGTATTACGCC  52 115
SH03_RS03820  778167 ..  778199 +  -4.9  -4.64844   TTCAGCATATAGGAG     GCCTCGGGTTGATG GTAAAA TATC-ACTCGGGGC      TTTTCTCTATCTGCC  71 436
        nhaA  779870 ..  779889 + -10.7  -4.59414   CAGGACGGTTTACCG            GGGAGCC ATAAAC GGCTCCC             TTTTCATTGTTATCA 100 41
        nhaR  780826 ..  780852 +  -5.1  -2.62043   GTGCGTTAATCGGCA         GCTCCCCCA AAGTTAAGG TGGGGGAGA         TAGATTAGTTGTACA  49 32
SH03_RS03850 NONE
SH03_RS03855  783539 ..  783552 +  -3.7  -3.54475   TTTGGGCTAACAAAA               CCGGC TTAA GCCTG                TTATGTAATCAAACC  51 17
        ileS NONE
        lspA  786928 ..  786977 + -18.1  -3.53811   GATGCGATGCTGACG CATCTTATCCGGCCTACAGATTGC TGC GAAATC-GTAGGCCGGATAAGGCG TTTACGCCGCATCCG 100 53
SH03_RS03870 NONE
        ispH  788455 ..  788474 +  -9.3  -5.24129   TAAGTTATGCGAAAA            TGCCGGT CTTGTT ACCGGCA             TTTTTTATGGAGAAA 100 54
SH03_RS03880  789423 ..  789450 +  -6.4  -3.70149   CTGTCACATGTTATT        GGCATGCAGTC ATTCATC GACT-CATGCC        TTTCACTGATATCCC  63 42
SH03_RS03885  790385 ..  790404 +  -2.2  -4.35483   TGTACTTGATCTCAA            TAATTTGT AACC ACAAAATA             TTTGTTATGGTGCAA  58 16
SH03_RS03900 NONE
        carB  795291 ..  795310 +   -10  -6.07627   ATCGAATAACTAATA            CGGTTCTC TGAT GAGGACCG             TTTTTTTTTGCCCAT 100 79
SH03_RS03915  796003 ..  796025 +  -8.4  -4.33165   TAGGCGTCACATCCG           TCGTCCCC TGCAAAC GGGGGCGA           TTTTCCTCCATTTGC  82 134
SH03_RS03950 NONE
SH03_RS03955  805304 ..  805315 +  -5.8  -3.58037   GAAGATCCTTCCGGC                GCTG ACCG CAGC                 TTTAGCGCGTTGATC  61 1
SH03_RS03960 NONE
SH03_RS03965  806936 ..  806946 +  -2.4  -2.83798   CCTTTGGTGTGGAGT                 TCCG TTA CGGC                 TGATGTTGGTTTGAT  41 12
SH03_RS03970 NONE
SH03_RS03975 NONE
SH03_RS03980  810960 ..  810972 +  -3.3  -3.72363   ACATCATCCTCGCAC                CAGTC GAC GACGG                TTTACGCTTTACGTA  51 155
        folA  811526 ..  811558 + -15.6  -2.58999   GAATTTACGGCTAGC      GCCGGATGCGACGC CGGTC GCGTCTTATCCGGC      CTTCCTATATCAGGC 100 50
        djlA  819417 ..  819436 + -11.4  -3.90744   TGCCCACGATTAAAG            GTGGCCGC CCTG GCGGTCAC             TTCTTTGAGAAAAGG  95 64
SH03_RS04025  820818 ..  820833 + -10.4  -4.03234   GGCAGAAACAAAAAA              TCCCCG GACT CGGGGA               TTTATGTACAAGAGG  89 365
SH03_RS04060  832514 ..  832526 +  -4.8  -3.25088   AGTAGCATAGGGTTT                GCAG AATCC CTGC                TTCGTCCATTTGACA  53 75
SH03_RS04065  833344 ..  833358 +  -7.1  -3.30124   CGGGTTGCCTGATGC               GACGC TTGCC GCGTC               TTATCAGGCCTACAA  64 55
SH03_RS04090  838764 ..  838784 +  -9.7  -6.17268   GTGTAAAATCACCCG            CCAGCAGAT TAT ACCTGCTGG            TTTTTTTTATTCTCG 100 71
SH03_RS04095  840483 ..  840493 +  -4.6  -4.72272   ACGAAGTCCGGGTTT                 GGCT GTT GGCC                 TTTTTCATCCAGAAA  72 510
        leuO  846517 ..  846556 +   -16  -5.49234   CAAACGCTAACTGAT  TGCAGAATAGGTCAGACA TGAA TGTCTGGTTTATTCTGCA   TTTTTTATTGAATGT 100 31
SH03_RS04130 NONE
        ilvH  849037 ..  849066 +  -2.1  -3.53091   CGCGCGGCGATAAAA       TAATGCGTTGAGA ATGA TCTCAATGCGCAA        TTTACAGCCCAACAT  47 15
SH03_RS04140  849177 ..  849199 +  -2.8  -4.87318   GTTAATGAATTTAAC          CCATA-CCA GTACAA TGGCTATGG           TTTTTACATTTTACG  67 57
SH03_RS04145  850437 ..  850452 +  -6.8  -2.72043   TTATTTTGTTACATG              CGGCGA TGAA TTGCCG               ATTTAACAAACACTT  56 231
SH03_RS04150 NONE
SH03_RS04155 NONE
SH03_RS04160 NONE
SH03_RS04165 NONE
        murE NONE
        murF NONE
        mraY NONE
        murD NONE
SH03_RS04190 NONE
        murG  861914 ..  861935 +  -3.8  -2.64651   GCCCGGGCGTAATTG           TAGCGATGC CTTTT GCATCG-TA           TGAATTTAAGAAGTT  44 29
SH03_RS04200 NONE
         ddl NONE
SH03_RS04210 NONE
        ftsA NONE
SH03_RS04220  867705 ..  867726 +  -6.7  -3.09208   TGCTAAACTGGCCCG           CCGAA-TGTA TAG TACACTTCGG           TTGGATAGGTAATTT  59 75
        lpxC  868700 ..  868743 +  -4.5  -6.17292   CTGTCGTATAAAATT CGACTGGCAAATCTGGC ACTCTCTCCG GCCAGGTGAACCAGTCG TTTTTTTTTGAATTT 100 52
SH03_RS04230  869446 ..  869462 +  -5.7   -2.8704   TACTTCATTTTATTA              ACTCCGC AAC GCGGGGC              GTTTGAGATTTTATT  53 55
        secA  872205 ..  872222 + -12.7  -5.33866   ACTGTTGAAGTAAAA             GGCGCAG GATT CTGCGCC              TTTTTTATAGGTTTA 100 47
SH03_RS04240  872749 ..  872778 + -12.1  -2.72144   AATTTGTTTTTGTAG       GTCGGATAAGGCG TTCA CGCCGCATCCGAC        ATTTGCACAAGATGC  83 142
SH03_RS04265  875695 ..  875720 + -16.2  -3.32963   CCTGTAATCTCCCAA         CGCTGGCGTG GAGCAA CACGCCAGCG          TTATCCCATCCCACT 100 34
SH03_RS04285  879216 ..  879238 +  -5.4  -4.57073   TCGACTTCTACTGGC           GCATCCGGGT GCA GCCAGGACGC           TTTTTCGACCGCCTG  72 247
SH03_RS04295 NONE
SH03_RS04300  881391 ..  881401 +  -2.4  -3.46586   ATTAATGCGCTTTTA                 CGGC TTT GGCG                 GTTTTCTCTTTAAAC  47 82
        pdhR  884060 ..  884085 +  -4.9  -3.24924   GAAAGAATTAGTGAT         TTTTCTGG-TAA AAA TTATCCAGAAGA         TGTTGTAAATCAAGC  53 30
        aceE NONE
        aceF  888795 ..  888812 + -14.1  -5.32882   GATGTAAGTAAAAGA             GCCGGCC CAAC GGCCGGC              TTTTTTCTGGTAATC 100 34
SH03_RS04325  890571 ..  890587 +  -6.5  -5.50499   CCGGCAATTAAAAAA              GCGGC TAACCAC GCCGC              TTTTTTTACGTCTGC  91 61
SH03_RS04335  895447 ..  895472 + -12.7  -6.02919   GCATAAACGACACAA         TGCCCGGTGAAT GAG ATTC-CCGGGCA         TTTTTTTATTTCTAA 100 61
SH03_RS04340  896035 ..  896072 +  -3.5  -3.19293   CTCGCGCATTTCTTT  CC-ACAGCGCAGCGGTA ATTTCC TGGCGCT-CGCTGTCGG   TTAAGTCTTCCGGTT  47 111
SH03_RS04360  899825 ..  899840 +  -3.2  -3.03771   TGATGTTAGGGTTTA              CGGTAT AAAA AGACCG               TATTCGGAAATATGC  44 18
SH03_RS04370  903170 ..  903203 +  -3.1   -5.4182   CTGGACGAGTAAGTG     TGAAGTTGCCGGATGT GTT GCATCCGGCA-TGGCA     TTTTTATTTGTGGTT  82 29
SH03_RS04380 NONE
SH03_RS04385  905678 ..  905707 +  -9.3  -4.10657   CGTAGCTAAGGCTAT       TTCCTCTCCTCTG GATT TGGGGGAGAGGAG        TTTTGACGGCTATCA  85 32
SH03_RS04390  906233 ..  906254 +  -5.2  -3.92542   CCGCGATTCTGATGG           CGCTTTTG CTACAA TAAAAGCG            TTGTTTCACCCTCGG  63 42
SH03_RS04395  907926 ..  907940 + -11.4  -3.56099   CCTGTCGTTAACGAA               GCAGGC GAT GCCTGC               TTTGAGGAAATTCTC  89 442
SH03_RS04405  909111 ..  909135 +  -7.8   -3.1855   GGGGTAAATTAATAA          CTGGCGCCAT CAGCC GTAGCGCCAG          TTAAGTATTACGCCA  63 67
SH03_RS04485 NONE
SH03_RS04490 NONE
        mrcB  928588 ..  928607 +  -9.2  -3.68662   GCTCAGATTGCGTAC            CGCTTGCG AACC CGCCAGCG             TTTCGAATATTATCT  78 150
SH03_RS04500  930938 ..  930957 +   -15  -2.74322   CTAATTTCTCTTTTG            GGGCACGG ATTT CCGTGCCC             ATTTCACAAGTTGGC 100 37
SH03_RS04505 NONE
SH03_RS04510 NONE
SH03_RS04515  934712 ..  934725 +  -8.1  -3.30124   ACGGATGCCCGATGC               GACGC TGGC GCGTC                TTATCGGGCCTACAA  66 94
SH03_RS04525 NONE
SH03_RS04530  938163 ..  938191 + -14.7  -3.68024   ATCTAATCTGTTGTT        CATGTGCCGGATA AAC TATCCGGCACATC        TTCTCTCTTCAACGC 100 35
         dgt NONE
SH03_RS04555  943518 ..  943541 + -14.6  -3.52093   AGTAATCTCCCTCAA          CCCCTTCCTG AAAA CGGGAAGGGG           TTCTCCTTACAATCT 100 36
SH03_RS04560  945166 ..  945180 +  -7.1  -4.40003   AAACTTAACGCTCTT               GGCGA AAAAC TCGCC               TTTGTCTTTCTGGAA  75 372
SH03_RS04590  951973 ..  951993 + -11.1  -4.89729   GTACACGTTTGGTTA            GGGGGCC TGCATAT GGCCCCC            TTTTTCACTTTTATA 100 200
         tsf  952918 ..  952939 + -13.7  -4.84761   CTTAATTATCAAAAA           GGAGCCGCC TGAG GGCGGCTTC            TTTTTGTGCCCATCT 100 36
SH03_RS04600  954034 ..  954052 +  -3.1  -4.11751   ACTGTGTGTGACTGT             CTGGTCT GACTG AGACAAG             TTTTCAAGGATTCGT  58 280
         frr  954641 ..  954689 + -11.8  -5.27206   TGATTTCTTGAACGA CAAAAACGCCGCTCAGTAGATCC TTGC GGATCGGCTG-GCGGCGTTTTGC TTTTTATTCTGTCTC 100 38
SH03_RS04610  956021 ..  956038 +  -8.4  -6.02914   TATAAGGTCAGATAT             GCCGTG GTTTTA CACGGC              TTTTTTTTGTATAGG 100 130
SH03_RS04615 NONE
        cdsA NONE
SH03_RS04625  959085 ..  959100 +  -5.4  -3.33696   ACTTTTCAATGATTT              CTCTCG GTTA TGAGAG               TTAGTTAGGAAGAAC  55 13
SH03_RS04630 NONE
SH03_RS04635 NONE
        lpxD  963222 ..  963259 + -12.7  -4.07515   TTGTTCGCCAAACTT   TACGGCCTGTCTCATTC TTAC GATTGCGGCAGGCCGTG    TTATTATTGTCGTTT 100 52
SH03_RS04645  963738 ..  963759 +  -4.3  -2.79098   ACGATGATGTGTGCT           CGTAGCCGG GAGG CCTGATACG            TGATTGATAAATCCG  46 8
SH03_RS04650 NONE
        lpxB NONE
        rnhB  966274 ..  966285 +  -5.8  -3.01243   GTCAAACGCGCACTG                GGAC TTGC GTCC                 TGATTCTTGTGTCGA  54 11
        dnaE NONE
SH03_RS04670  970800 ..  970817 +  -9.1  -5.24129   AAAAGTTCTGAAAAA             GGGTCAC TTCG GTGGCCC              TTTTTTATCGCCACG 100 46
SH03_RS04675 NONE
SH03_RS04680  973485 ..  973505 + -13.3  -3.24925   TGTCATCGCCGCATT            TGCCCGGTA ACG TGCCGGGCA            TTGCTACTGTAAAAT 100 45
        tilS  975161 ..  975174 +  -8.1  -4.65895   ACCAGTAAGTTTGCC               GCAGC GTAT GCTGC                TTTTTCCCTGACAGC  84 358
SH03_RS04700 NONE
SH03_RS04705 NONE
SH03_RS04710  977310 ..  977323 +  -8.1   -3.4252   CTCAACGCCTGATGC               GACGC TGGC GCGTC                TTATCATGCCTACAA  68 157
SH03_RS04750  984743 ..  984757 +  -6.4  -3.12351   GGTTGAAGAGAAAAA               TCCTGA AAT TCAGGG               TTGACTCTGAAAGAG  57 161
SH03_RS04755  986532 ..  986545 +  -2.3  -2.72471   AAGAAGCGTACTTTG               CAGTG CTCA CACAG                ATTGTCTGATGAAAA  40 34
SH03_RS04760  986659 ..  986671 +  -6.3  -3.57309   CTCAGGCCTACCAAA                TTTGC ACG GCAAA                TTTGAAGAGGTTTTA  63 28
SH03_RS04765  986801 ..  986834 +  -6.7  -4.49756   GTTAAATAAAAAATA     CTTCAGAGTGTACCT GCAA AGGTTCACTGCGAAG      TTTTGCTCTTTAAAA  76 52
SH03_RS04770  989938 ..  989951 +  -2.4  -2.78679   AGAACGCAGAAGCGG               TCTG ATAAAA CAGA                ATTTGCCTGGCGGCC  41 85
SH03_RS04775  990091 ..  990106 +  -6.1  -2.82742   AAATTAAGCAGTAAG              CCGGT CATAAA ACCGG               TGGTTGTAAAAGAAT  55 44
SH03_RS04780  990216 ..  990235 +   -10  -5.92337   CCACTTATTAAGAAG            CCTCGAGT TAAC GCTCGAGG             TTTTTTTTCGTCTGT 100 38
        dkgB  991180 ..  991197 + -11.3  -4.68593   ATTAAGCCTCTCTGA             CAGCTCC TCCG GGAGCTG              TTTTTACATGCTCGC 100 36
SH03_RS04795 NONE
SH03_RS04800  993757 ..  993777 + -10.4  -5.25699   GGCATAAATAAAAAA            GGCACCGG GGGAA TCGGTGCC            TTTTTATTATCTGGT 100 34
SH03_RS04815  996761 ..  996773 +  -4.1  -3.14132   TTGGTAGCCTGTATC                TTCCA GTG TGGGA                TTCATCGCCGCGGCA  47 49
SH03_RS04825  998024 ..  998034 +  -2.4  -3.33744   AGGCGCTAAAAATAG                 CGAC TTG GGCG                 ATTTTTGCAGCAAAC  45 52
SH03_RS04830  998237 ..  998259 + -11.4  -5.88197   AATGAGTTCAGAGAG           CCGCAAGATT TTT AATTTTGCGG           TTTTTTTGTATTTGA 100 56
SH03_RS04835  999613 ..  999626 +  -5.3  -3.14229   GGAGCTATTAAAGGT               GCTAT TACG ATAGC                TATTAGTAAAAATAT  52 319
SH03_RS04850 1001012 .. 1001024 +  -4.7  -3.00918   CATTCCACAATCACT                CGCGC ATT GCCCG                CTTTATAATGTAGAT  48 460
SH03_RS04860 1002032 .. 1002049 + -12.7  -3.89354   TAGCGGATAAAGAAA             CGGAGCC TTTC GGCTCCG              TTATTCATTTACGCG 100 42
        gmhA 1005385 .. 1005398 +  -8.1   -3.4252   GCTGATGCCTGATGC               GACGC TGAC GCGTC                TTATCATGCCTACAA  68 90
SH03_RS04875 1006299 .. 1006314 +  -7.6  -3.21912   TGTAGTTTGATGCCA              GTTGTG GCTG CACAAC               TTCGTGGCTTAACGG  61 31
SH03_RS04895 1008671 .. 1008724 + -10.1  -2.56747   TGTAGGACGGATAAG GCGTTTACGCCGCATCCGGCAGTTG TACG CAGGTGCCTGATGCGACGCTGGCGC GTCTTATCATGCCTA  70 36
SH03_RS04900 1009355 .. 1009368 +  -8.1   -3.4252   GCAGATGCCTGATGC               GACGC TAGC GCGTC                TTATCATGCCTACAA  68 47
SH03_RS04910 1012004 .. 1012022 +  -5.2  -3.10343   TGGATAAGCAGCAGG             TGCTTTCG CAG CGAACGCG             TTAAATGCTGAATCT  53 3
SH03_RS04915 NONE
SH03_RS04920 NONE
SH03_RS04925 1013877 .. 1013887 +  -2.4  -2.87035   TGGGAAAATGGCAGA                 AGCG TTT CGCA                 TGCGTTTTTGAATTT  41 4
SH03_RS04930 1014383 .. 1014403 +  -3.1   -4.5442   TTGCAATGAAAATAA            CGCCCGCCT GGT ATGTGCGCG            TTTTCTGATTCCACA  63 48
SH03_RS04935 NONE
        prfH 1015577 .. 1015598 +  -2.2  -5.00616   TTGGCCCGATAGAAA           CCATGTCC ATTTCC GGATACGG            TTTTTTGAACAGACC  71 201
SH03_RS04950 1017641 .. 1017665 + -17.9  -4.47888   GGTCGCTAATCTTTT          CAACGCCTGGC ACT GCCGGGCGTTG          TTCTTTTTAACTTCA 100 32
        frsA NONE
SH03_RS04960 1019438 .. 1019460 + -13.5  -2.54276   GGCGTGAGTGAAATG           TGCCGGATG CATCA CATCCGGCA           ATATTCATTAAAACT  91 34
SH03_RS04970 NONE
SH03_RS04975 1023186 .. 1023240 +  -8.4  -3.69437   CGTGCGTAAATAAAA CCGGGTGATGCAAAAGTAGCCATTTG ATT CACAAGGCCATTGACGCATCGCCCGG TTAGTTTTAACCTTG  73 32
SH03_RS04980 1023518 .. 1023529 +  -2.2   -3.9941   CGCTCACTATACATC                CTTG GCTG CAGG                 TTTAGTTGTACACCA  53 174
SH03_RS05040 NONE
SH03_RS05045 NONE
SH03_RS05050 1032748 .. 1032768 +  -8.2  -2.62396   ACCTGAGCGGCAGTG            ACCTGCGG CATGC CCGCAGGG            TGATGTAACCCGCTG  63 95
SH03_RS05065 1034413 .. 1034423 +  -5.4  -4.22748   GAAATTCTTCTCGGC                 TGAC TCA GTCA                 TTTCATTTCTTCATG  65 24
SH03_RS05075 NONE
SH03_RS05080 1038137 .. 1038151 +  -4.2  -3.30124   CAGGCATTGCCGGAT               GGCG GCACAAG CGCC               TTATCCGGCCTACAA  51 92
SH03_RS05120 NONE
SH03_RS05125 1045605 .. 1045642 + -13.5  -4.45259   AATTATTTTAAGAGA   TAAAACCGTCTGCGGAA TATT TCCCGCAGACGGCTTTG    TTGTTTTTGAAATTT 100 39
SH03_RS05130 NONE
SH03_RS05135 1049188 .. 1049234 +  -9.3  -3.21993   GCGGTGGCGTGCACC GGCAGGC-GGCGGCCGATGCGT GAAT AGGCGATGGCGGCCAGCTTGCC TTCAATCTTCTCGAT  67 391
SH03_RS05155 1052635 .. 1052654 +  -5.8  -2.88579   TATTTAGTAGCGGAC            TTGCTGAT GACT ATCAGTAA             TCTATAGAAAATTGC  53 6
SH03_RS05190 NONE
SH03_RS05220 1064041 .. 1064071 + -12.8  -2.52795   TAATGCATTGAATGA       TAAAAATGGCGC AAATACA GCGCCATTTTTA       TAGGTTAAAAACATT  90 38
SH03_RS05260 NONE
SH03_RS05280 NONE
SH03_RS05285 NONE
SH03_RS05290 1076911 .. 1076921 +  -2.4  -2.62851   GGGTAGGATCATAAA                 GTCC TCG GGTC                 GTTGTCCACTCTTTT  38 60
SH03_RS05315 1081783 .. 1081796 +  -5.3   -3.1811   GTATAAGGGATGTAG               CCATT TTTA AATGG                ATTTCTTATGCCAAA  53 304
SH03_RS05320 NONE
SH03_RS05325 NONE
SH03_RS05330 1084990 .. 1085016 + -13.2  -3.59979   CTGCTCTTCTGTAAA         TATCCTGGTATT ACC AATGCCAGGATA         TTTACAGTGAAAAAG  93 139
SH03_RS05360 1091936 .. 1091961 +  -9.7  -3.99062   TGTTATTGCATAAAA         CCGCGCCATGT CTGC ATATGGCGCTG          TTTCTCCTACCTCTT  86 42
SH03_RS05370 1093970 .. 1093986 +  -3.7  -5.15634   ATCCCCGTTAATATG              CCATTTG GCG CAAATTG              TTTTTTAATCCACTG  79 113
SH03_RS05385 NONE
SH03_RS05390 NONE
SH03_RS05395 NONE
SH03_RS05400 NONE
SH03_RS05405 NONE
SH03_RS05410 NONE
SH03_RS05415 1103051 .. 1103070 +  -3.4  -3.29074   TATCACACTTACAGG            CGCTCGCC TTAT GGGGAACG             TTGCTGCTCTGTTTC  47 239
SH03_RS05420 1104446 .. 1104463 +  -2.7  -4.38927   GCGATTTCTGATAGT             GC-CTGGT TTA ATCAGAGC             TTTATTATCTGCGAC  59 208
SH03_RS05425 1105406 .. 1105417 +  -5.8   -3.2657   ATCTGTATATCTGTA                TGCC AACT GGCA                 TTCCATCTCTTTTTT  57 110
SH03_RS05430 1106385 .. 1106395 +  -2.4  -2.64099   ACCATAAGAGATAAG                 CGCC GCC GACG                 ATTCTGATAAGCGAA  38 431
SH03_RS05440 1107172 .. 1107191 +  -2.8  -4.07568   GGATAAAGCGTTCGC            GCTGCATT CGGC AGTTCAGC             TTTTCAGCCGCCGCC  54 108
        prpB 1109944 .. 1109957 +  -8.1  -3.30124   GCCGATGCCTGATGC               GTCGC TGAC GCGAC                TTATCAGGCCTACGA  66 67
SH03_RS05455 NONE
        prpD NONE
        prpE 1114935 .. 1114990 + -11.1   -4.4767   TAGGTTATTGTCGGA TGCGTCGCGCGGTGCATCCGGCACTG TGTGC CGATGCCTGATGCGACGC-TGACGCG TTTTATCATGCCTAC 100 38
        codB NONE
SH03_RS05475 1117823 .. 1117834 +  -7.2  -3.30243   GTTTATGCCGGATGC                GGCG TGAA CGCC                 TTATCCGGCCTACGT  64 64
SH03_RS05485 NONE
SH03_RS05490 NONE
        cynX 1121542 .. 1121566 + -12.9  -2.75822   TCGCTGAACTTGTAG          GCCTGATAAGC GCA GCGTATCAGGC          AATTTTTATAATTTA  91 91
        mhpA NONE
        mhpB NONE
SH03_RS05535 NONE
SH03_RS05540 NONE
SH03_RS05545 NONE
SH03_RS05550 1135327 .. 1135380 + -14.7  -2.57931   TAGGTCTGATAAGAC GCGTTAGCGTCGCATCAGGCA-TC TGCGCAC GACTGCCGGATGCGGCGTGAACGC CTTATCCGGCCTACG 100 141
SH03_RS05555 1137066 .. 1137088 +  -4.1  -3.53091   GCGTTTACAGGTATA           CTCGCTAAA AATTA TTCAGCGGG           TTTGGAAACAAAGAT  52 91
SH03_RS05560 1137739 .. 1137777 +  -9.5  -2.76583   CGGATAAGGCGTTCA  CGCCGCATCCGGCA-GTC GTGC GCCATGCCTGATGCGACG   CTTTGCGCGTCTTAT  70 123
SH03_RS05590 NONE
SH03_RS05595 NONE
        tauA NONE
        tauB NONE
SH03_RS05620 NONE
        tauD 1149026 .. 1149063 +  -6.3  -3.85698   AGAGGGTTAGGGTGA   GGGGGCGTTCACC-GT ACTTTCA ACAGGTTAACTCCCCC   TTTCTGAGAGGAAAC  65 75
SH03_RS05640 1152350 .. 1152379 +  -3.6  -3.01712   AGTACTGGCCTCCAC      GGTCCGTGTGAACG ATAA CGTTC-CG-GGGCC       TCTTACGCCGCCACA  46 268
SH03_RS05655 1154792 .. 1154815 + -15.4  -3.14132   ATTTAATCTAAATAA          TGCCCGTCAA GGAT TTGACGGGCA           TTACTGCAAAGGACG 100 69
SH03_RS05660 1155467 .. 1155494 + -11.4  -3.07816   AGTATTAATCAGGAC        GCGGGGAT-AACC AAC GGTTTATTCCCGC        TTAGCTCGGTCACCA  84 33
SH03_RS05670 NONE
SH03_RS05675 NONE
SH03_RS05680 1159626 .. 1159639 +  -2.3  -4.08767   GCATTGCGATATTTT               CCGCT AAAC AGCGA                TTTTGACAGGGTGAA  56 355
SH03_RS05690 1160301 .. 1160323 +  -6.3  -3.49886   GTGAAGCCAGGCAGG           GTGTTGATC TCGTT GATCACCAC           TTCGTTCTCTGGGGT  58 191
SH03_RS05700 1161512 .. 1161530 +  -5.4  -3.27298   GAATATATTTCATAA             CTTTTATT TAT AATAAAGG             TTGATAATTAAAAGC  55 3
SH03_RS05705 1162019 .. 1162033 +  -4.2  -5.21459   AAAGTTGTCACGGCC               GAGACT TAT AGTCGC               TTTGTTTTTATTTTT  78 68
SH03_RS05710 1163497 .. 1163528 + -14.4  -5.63374   GGCTGAAATAAAACC      GCGCCCGGCAGTGA ATTT TCGCTGCCGGGTGG       TTTTTTTGCTGTTAG 100 30
SH03_RS05715 1163945 .. 1163978 +  -7.4  -2.87963   GATACCTGATAGTGC     TAACGGGTGAGCTA CGAAAA TGGCTCACCCGAAA      TATCATACTTCTGCC  59 39
        adrA 1165349 .. 1165368 +    -2  -3.87815   ATTTTTGCGGAACCC            ATTACCGC CTGA GCGGCAAA             TTTATACGCCTGGGC  54 226
SH03_RS05730 1166618 .. 1166634 +  -5.9  -5.64421   GGGGTGTATTGAGAT              TTTCACT TTA AGTGGAA              TTTTTTCTTTACAAT  95 91
        aroL 1167249 .. 1167259 +    -4  -4.08394   CCCTGGCACAGACGA                 TCAA TTG TTGA                 TTTTCGAGCGCCTAT  61 15
SH03_RS05740 NONE
SH03_RS05745 NONE
SH03_RS05750 1168424 .. 1168435 +    -3  -4.18018   CGGCTGGCTGCGGAA                TTAC TGGT GTAA                 TTTTGCGTGACAGCC  58 14
SH03_RS05755 1168797 .. 1168821 +  -6.3   -4.8667   CTATCTGTAATTCCT          CGCCTTCCCCT TGA ACGGGAGGGCA          TTTTTCTGAAATATC  80 31
SH03_RS05760 1169341 .. 1169360 +  -2.8  -3.53164   CTGCGCTAAAAATTA            TTGCTCGC CGTA GCGAATAA             TTATATGCCTGGTGT  48 86
SH03_RS05770 1171851 .. 1171861 +  -8.2   -4.4648   CACCTAATAACTCTC                 CGCC TTT GGCG                 TTTTGTAGTAACAAT  85 494
SH03_RS05790 1178163 .. 1178190 +  -7.6  -3.68962   CAACCCGCTTTTAAC        GCCTTGCTCATC GGAC GCAGAGCAGGGC         TTATGATTTCTTAAC  70 27
        phoR 1179541 .. 1179562 +  -9.5  -4.88918   CATCTTTTATTGCCA           TAAGCCAGT CGAT GCTGGCTTA            TTTTCTTTGCAGTCA 100 52
SH03_RS05800 1181262 .. 1181285 + -15.3  -5.64304   GAACATTTGTTTTAA          CCACGGGGC TGCGAT GCCCCGTGG           TTTTTTATTGTGTTG 100 47
        proY 1182706 .. 1182734 + -14.6  -3.03338   CCTTGCGTTCTGTAA        GCCGGTTCAGGA GGAAA TCCTGATCCGGC        TATTCCGAAAGTTAT 100 42
SH03_RS05810 1184794 .. 1184808 +  -5.6  -3.58533   TCCAGACGTGGGCGG               CGGCTT GCC ATGCCG               TTTAACACGTTCTGG  58 157
        queA 1186398 .. 1186422 +  -9.9   -2.9162   AGGCAATTAATGAGC          GCGTCGGGGAG TAA TTCCGCGGCGC          TGGTTTAAAACGTTG  73 12
         tgt NONE
        yajC 1187930 .. 1187944 +  -2.7  -2.93361   CCGTCCTGCCGAAAG               GCACC ATGAA GGCGC               TGTAATTAAAATTTT  43 6
        secD NONE
SH03_RS05840 1190831 .. 1190850 +   -10  -5.92337   CGTTGATGTTGAAAA            TCCCGGTC AGAA GATCGGGA             TTTTTTTTGATGTAT 100 50
SH03_RS05845 NONE
SH03_RS05850 1191429 .. 1191449 + -12.6  -4.30576   GTTAACAATCAGAAA            TGCCGGGA ATAAA TCCCGGCA            TTTTCATAATCAGAA 100 36
SH03_RS05865 NONE
        ribD NONE
        ribH NONE
        nusB 1195893 .. 1195933 +  -7.7  -5.43553   AAAAAGTGATATCCA GGCCGGTAGATTCACGGAA GACCG TTCCATG-ATC-GCCGGCC TTTTCTTTTTTACCT 100 32
SH03_RS05885 NONE
SH03_RS05890 1197445 .. 1197487 +  -6.2  -2.73829   TGTCGTAGTTGTGCA CCGATGCCTGATGTGACG CTTGTCA CGTCTCATCAGGCCTGGA CTCTTATTTAAATCC  55 33
SH03_RS05915 1203341 .. 1203364 + -15.4  -3.55444   AATTTGTGGTTTTTA          CGTCGCATCT GGTC AGATGCGACG           TTTGCCGCATCCGAC 100 39
SH03_RS05930 1205612 .. 1205652 +  -9.7  -3.58726   ATAAGCGTAGCGCAG  CAGGCAATTCGCCGCGTTT TTT ATGCCTGACGAATTGCCTG  TTCTATCTCAAAGCG  80 133
SH03_RS05975 1215114 .. 1215125 +  -5.8  -2.75343   GGAGCAGGAAGCATC                GCGT AAAA ACGC                 ATTTGCAACTGTCGG  53 20
SH03_RS05980 1215304 .. 1215325 +  -3.6  -2.66232   TCGACTCATAAAAGT           GATGCCGC TATAAT GCCGCGTC            CTATTTGAATGCTTT  44 13
SH03_RS05985 1216796 .. 1216819 + -12.4   -5.9873   TAAATTCGCACAAAG          GCCCGTCACC GCCA GGTGGTGGGC           TTTTTTTTGTCATGA 100 60
SH03_RS05990 1217636 .. 1217653 +  -4.7  -2.96274   TCGTAATTGATGCCA             GAGGCGC AACT GTGCCGC              TATACTTATCCAGGG  50 31
        clpX 1219064 .. 1219082 +   -11   -4.3623   TTAGTTAACCAAAAA             GGGGGGAT TTT ATCTCCCC             TTTAATTTTTCCTCT 100 59
SH03_RS06000 1221605 .. 1221634 + -13.6  -5.72616   CACTAATAAAAACAG       GGCTGGCAGGCT AATTCG GGCTTGCCAGCC        TTTTTTTGTCTCGCT 100 58
SH03_RS06005 1222089 .. 1222108 +   -10   -5.7827   GTGACGAAGTTCAAG            GGCGCATC TACT GATGTGCC             TTTTTTATTTGTATT 100 61
SH03_RS06010 1224165 .. 1224180 +  -8.2  -4.39571   GCTGTAACAAGAAAA              GGTCGC TTTC GCGGCC               TTTTCCATTTCTGAA  82 74
SH03_RS06015 1224675 .. 1224697 + -10.7  -2.96274   TTTTGCCAGACTGAA           GAGGTCATA CCAGT TATGACCTC           TGTACTTATAACAAC  79 62
SH03_RS06020 1225506 .. 1225532 +  -7.3  -4.21194   GGAGAAATCCGTTTC        GCAGACGCCAGT AATT AC-GGCTTCTGC         TTTTACCTGATACGC  72 401
SH03_RS06035 1228578 .. 1228593 + -11.8  -5.86332   AGATCCCTTCCAGCA              CCGGGC AATT GCCCGG               TTTTTTTTGCGTTGA 100 43
SH03_RS06040 NONE
SH03_RS06045 NONE
SH03_RS06050 1232784 .. 1232807 +  -8.9  -4.67038   GGTGCAAAAATGTAA          CGCACTGTG CACTGT CATAGTGCG           TTTTCATTTTCAAAC 100 62
SH03_RS06055 NONE
SH03_RS06060 1234599 .. 1234625 +  -7.3  -5.68023   AAGCACTGCAAAAAA        CAGCCGGACGGT TTTC ACC-TCCGGCTA         TTTTTTTAATTGTGA 100 42
SH03_RS06070 1236288 .. 1236315 +   -15  -2.71364   CAATATTAAGCGACG        TTAACCCTCTCC GCCC GGAGAGGGTTAG         TAGTTCCAGCGATAA 100 32
SH03_RS06080 1237815 .. 1237833 +  -5.2  -5.02074   TAGTGATTGATCATG             TCACGCAG CAA TTGCGGGA             TTTTTTCCGAGGTGA  80 485
SH03_RS06120 1246752 .. 1246769 +  -9.9  -2.51951   AACCCTGAATCTGAC             TCCAGGA TTTT TCCTGGA              CATTTTCGTCGTTGC  70 39
SH03_RS06125 1250669 .. 1250683 +  -9.2  -3.18681   CAGCGCATGGCGGCA               GCGTGC CAG GCGCGC               TTCATAGGCTTCCAC  67 466
SH03_RS06145 1251624 .. 1251639 +  -6.1  -3.04398   CAATTATTGCGTACA              GCCAG TACATT CTGGC               GTTTTCGAGCACAGG  56 60
SH03_RS06150 1252345 .. 1252369 +  -9.9  -3.09492   CACAAGATGTGCATT          CAGCCTCGCCG TTC TGACGGGGCTG          TGTTAGCATTACCCC  74 77
SH03_RS06155 1254355 .. 1254371 + -10.9  -3.25015   TCCGCCCCATTTGAT              CGTAAGC ACA GCTTACG              TTCGTCATCCTTAAC  81 27
SH03_RS06160 1254715 .. 1254728 +  -2.3  -2.64099   ATGCAGCTGCCGCCT               GGCTT TAAG ATGCC                GTTCTGATGCAAACC  40 5
        recR 1255349 .. 1255366 + -11.3  -2.55818   TTTTTAAGCAAACGA             GAGCAGG ATCA CCTGCTC              TCGCTTGAAATTATT  79 34
SH03_RS06170 1257330 .. 1257357 + -15.7  -5.50723   GGTTTCCTGATGTAA        TGCCGGATGAC CTTCGT GTCATCCGGCA         TTTTTCTTTTCATCA 100 31
         adk 1258245 .. 1258264 +   -10  -4.07885   TTATCAGCAATCTCA            GGCCGGAT ATTC ATTCGGCC             TTTTACAAAAACCTC  88 121
SH03_RS06180 1259372 .. 1259396 +  -5.7   -4.3129   GTAAAGAACTGAGCG         CCGTCG-CGA AGAGCC TCGTCGGCGG          TTTTCATCATCCGTG  70 50
SH03_RS06190 1261778 .. 1261807 + -12.1  -2.82803   ATCGTCGGTTCGTAG       GCCAGATAAGGCG TTCA CGCCGCATCTGGC        ATTTGGCTCTCGATG  83 44
        ushA 1267071 .. 1267082 +  -2.2  -5.24129   GGGGGCGTCGATAAT                CGTT GGCA GACG                 TTTTTTCTGCCCCAG  79 200
SH03_RS06220 1269070 .. 1269083 +  -8.1  -3.30124   ACCATTGCCTGATGC               GACGC TTAC GCGTC                TTATCAGGCCTACAA  66 206
SH03_RS06230 NONE
SH03_RS06235 1274208 .. 1274218 +  -3.2   -3.4298   GTATAACATCTCTCT                 GTGC GCA GTAC                 TTCCTGTATTATTGT  49 35
SH03_RS06240 1274901 .. 1274920 +  -2.1  -3.67792   CAAAACGTCGGCCAA            TCAGCTGC TGCCC GC-GCTGG            TTTAAATGACTATCG  49 196
SH03_RS06255 NONE
SH03_RS06260 1277695 .. 1277728 + -16.8  -2.81547   GAAGAAGAAATGATG     CGATGCCGGATGCG CAGCAT CGCATCCGGCGTTG      TGGTTCATGTGCCGA 100 28
SH03_RS06280 NONE
SH03_RS06285 1283176 .. 1283199 +  -6.7  -4.02653   TGAGAGTAAATAAGG          GGCGTTCTG GTTGAA TGGAACGCC           TTGTTTAAATTAATT  69 41
SH03_RS06290 NONE
SH03_RS06295 NONE
SH03_RS06300 NONE
SH03_RS06305 1289397 .. 1289411 +  -3.6  -4.38154   TTTTGTTGGTGAAAT               TAATGT TAC GCATTA               TTTTATAACAAATAT  63 192
SH03_RS06325 1293243 .. 1293253 +  -3.2  -4.18197   GAAAGTATTCCTGAA                 CAGG AAC TCTG                 TTTTGCGTGACGCCT  58 5
SH03_RS06330 1294169 .. 1294186 + -12.7  -5.40474   TAATGTCTGTCGCAT             CCCGCTC TGCG GAGCGGG              TTTTTTTGACAAAAT 100 38
SH03_RS06335 NONE
SH03_RS06340 NONE
SH03_RS06345 1297878 .. 1297891 +  -2.5  -5.67711   AAGATGTTGCTTCAG               TATTA AAAA TAATA                TTTTTATTTTATTTG  84 109
SH03_RS06350 NONE
SH03_RS06355 1300853 .. 1300873 + -10.4  -3.36671   ATCTGGCCCCTGCAA            TGCCCGTC CTTGC GGCGGGCA            TTCTCCGGTTAAGGT  78 40
SH03_RS06360 NONE
SH03_RS06365 1303407 .. 1303438 + -11.6  -2.93723   TATCGCATAAGAGTG      CAGTACTCATGCCG GATG CGGCATGAGTACCA       TATCCTTCCTGAAAA  83 69
SH03_RS06385 1308654 .. 1308667 +  -3.1  -3.60098   AATAAAAAACTGGCT               CGTTT ATTA GAACG                TTTGCAATAAGGGGT  51 2
SH03_RS06390 NONE
SH03_RS06395 NONE
SH03_RS06400 1311693 .. 1311707 +  -7.1  -3.30124   ATTTGTGCCTGATGC               GACGC TTGAC GCGTC               TTATCAGGCCTACAA  64 56
        cysS 1316338 .. 1316361 + -16.8  -3.46602   GTAATTGCGCTATTG          CCGGATGCGA GTTT TCGCATCCGG           TTATCGTCTGCGCCA 100 37
SH03_RS06445 1319085 .. 1319104 +  -5.1  -2.75498   ATGAGATATGAATAA            TCAAAAC CACGTT GTTTTGA             ATTATATATCACGTC  50 26
SH03_RS06450 NONE
SH03_RS06455 1322649 .. 1322662 +  -3.9  -3.63515   AAATTATCAATAAGA               TAATC TGCA GATTA                TTATTGGCGATGGCA  53 44
        fimH NONE
SH03_RS06465 1324588 .. 1324602 +  -2.1  -4.08216   CTTTCACTGTGCTCT               GGATT TGTTT GATCC               TTTTCAGGAAGGTAA  56 438
SH03_RS06475 1325556 .. 1325577 +  -7.2  -4.13341   ACAGGCGGTATCGTT           CAGCGCCA CACCAA TGGCGCGG            TTTGATTTGCTCTCT  70 452
SH03_RS06490 NONE
SH03_RS06495 NONE
SH03_RS06500 NONE
SH03_RS06505 NONE
SH03_RS06510 1328613 .. 1328638 +  -4.7   -2.8547   CAAACTGTAGTACAA         TTCTCTCCAGT TTGA ACAGGAAAGAA          TATGCTATGAACCCT  49 61
SH03_RS06515 1329008 .. 1329033 + -10.5  -3.41907   AACGACTAAAATATG         GAGGCTCTTAT ATTT ATATGAGCCTC          GTTTTATGCTTTTTG  80 56
SH03_RS06520 NONE
SH03_RS06525 1330854 .. 1330867 +  -2.3  -4.39426   TAATTACTTTGTTTG               CTCCC ACAA GCGAG                TTTTGTACGGCTGTA  58 121
SH03_RS06530 NONE
SH03_RS06535 1332646 .. 1332674 + -11.8  -3.32844   ACACGGCATAATTAT        GTCACCGGAG CCTGAACAA CTCCGGTGAC        TTCTGCGCTAAACGG  89 90
SH03_RS06540 NONE
SH03_RS06545 1333399 .. 1333420 +  -2.9  -2.71712   AATGGTTGCGACTGG           CAGCAAGGA GGAG TCATGGCTG            ATTTGAGAAAAGCAG  41 3
SH03_RS06550 NONE
SH03_RS06555 NONE
SH03_RS06560 NONE
SH03_RS06565 1334808 .. 1334843 + -14.2  -4.77036   CTTGAGGGAGCCACT    TATATGTTG-GGGAGGC AAC GCCTCCCGCAACATATC    TTTTTCGTAATCAGA 100 164
SH03_RS06570 1335230 .. 1335243 +  -3.7  -3.93664   GGGTGCTCCACCCTG               GCCCG GATG CTGGC                TTTCATGTATTCGAT  58 226
SH03_RS06585 NONE
SH03_RS06590 NONE
SH03_RS06595 1339309 .. 1339319 +  -2.6  -4.31293   TGAGTTGAAATTTCA                 TATT GTT AATA                 TTTATTAATGTATGC  59 436
SH03_RS06615 1340791 .. 1340803 +  -4.1  -4.31164   GAGGTTGCCCCGTAT                TCAGT GTC GCTGA                TTTGTATTGTCTGAA  63 400
SH03_RS06625 1341082 .. 1341140 + -16.3  -4.06182   AAAATACCCCCTGAA AAGAAAGGAAACGACAGGTGCTGAAAG CGAGC TTTTTGGCCTCTGTCGTTTCCTTTCTC TGTTTTTGTCCGTGG 100 83
SH03_RS06630 NONE
SH03_RS06635 1342442 .. 1342474 + -11.4  -3.16564   ATCATTGGGATTATG     CCGCAGCACG-TCTT AAGC AAGAACATGCTGCGG      TTGGATGCTATTTTT  84 40
SH03_RS06645 1343538 .. 1343554 +  -5.2  -2.99268   TTGTTTGATGTTATG              CTTTTG CGCCC CAAAAG              GTTGTTTAGATGTAT  52 98
SH03_RS06650 1344964 .. 1344994 + -11.8  -4.43309   TTGAAATGGCTAGTT       ATTCCCCGGGGCGA TTT TCACCTCGGGGAAA       TTTTAGTTGGCGTTC 100 229
SH03_RS06695 1357357 .. 1357390 +  -3.7  -3.10905   CGTCTGCGTTCGCTC     ACCCCAGTCACTTAC TTAT GTAAGCTCCTGGGGA      TTCACTCGCTTGTCG  48 79
SH03_RS06700 NONE
SH03_RS06705 NONE
SH03_RS06710 NONE
SH03_RS06715 1363710 .. 1363736 + -16.7  -5.65513   GTCAACCATCCGAAA         CCGCTCTCATC CATTC GATGAGAGCGG         TTTTTTTAATTACTG 100 70
SH03_RS06745 1368099 .. 1368140 +  -8.2  -3.65046   ATTTCTATCAACCCT GGGGCTGCCACTCCAAA CCCGAACAA TTTGGA-TGGTAGTCCC TTCTTCGCATGGAGG  73 250
SH03_RS06750 1368338 .. 1368359 +  -4.4  -3.52073   TGTGCGGGGAGTAAT           CCCATAAG CGCTAA CTTAAGGG            TTGTGGTATTACGCC  52 45
SH03_RS06755 1369531 .. 1369557 +    -8  -3.14683   GGAGAATAACAAAAA         TGGTCATCTGGA GCT TACAGGTGGCCA         TTCGTGGGACAGTAT  63 49
SH03_RS06770 NONE
SH03_RS06775 NONE
        entF 1378387 .. 1378413 +  -8.2  -5.85425   AATATTATTTATAAA         CCCATAATTA CAGAAAA TAATTATGGG         TTTTTTATTTGTTTG 100 44
SH03_RS06785 1379710 .. 1379720 +    -4  -3.66356   TGATGGCAGACCACT                 TAGT TTA ACTA                 TTTGCGGTTGAAGGT  54 18
SH03_RS06805 1384198 .. 1384227 +  -8.7  -2.87132   CCAGCATCTGCCCTT       GTGCTGAT-TCTGG CGT CCAGAGATTGGCAC       TGTGTGCAGCGGCAG  61 343
SH03_RS06815 NONE
        entE NONE
SH03_RS06825 NONE
SH03_RS06830 NONE
SH03_RS06835 NONE
SH03_RS06840 1392448 .. 1392480 +  -9.8  -3.34715   TTGATAGCATTTGTA     G-GCCGGATAAGGCG TTCA CGCCGCATCCGGCAC      TCTTTCAGCAACATG  76 144
SH03_RS06845 1392984 .. 1393002 +  -6.6  -3.53012   TAGGCGACTTTGGTG             CCGTGGAG AAA CTTCTCGG             TTTGCGGCAGCACGG  61 300
SH03_RS06855 1395104 .. 1395138 +  -7.2  -3.90112   CCAGGCGCGGGAATA     TTGACGGTCGGCAA ACAACTC TTGCAGGCCGTTAA     TTTGCTTCAGGCGCA  68 53
SH03_RS06880 1399976 .. 1399995 + -13.6  -4.63218   AATTCACCTAATTCT            TCGGGTGC TGCG GCACCCGA             TTTTCTTCCCCGCAC 100 163
SH03_RS06885 1401679 .. 1401702 + -13.1  -5.27923   ACCTGCAATTGCTTA          GCCGCCGGG GTCAAA CCTGGCGGC           TTTTTTATGGCATTA 100 56
SH03_RS06895 1403861 .. 1403872 +  -5.8  -3.31263   CATCCTCTGGGCAAA                GCGA GTTA TCGC                 TTGTGCAGATGGGAT  57 230
        dpiB NONE
        dpiA 1414882 .. 1414904 + -13.4   -2.6955   GGGTGACATGATAAA           GCCGGAGGAA ACT TGCCTCCGGC           ATTACTATTTACTTG  93 35
        pagP 1417580 .. 1417596 +  -7.3  -4.02302   GGTGTACTGGTAACC              GACACAG CAT TTGTGTC              TATTTTTCATGTAAA  72 158
SH03_RS06970 1417855 .. 1417871 +  -9.4   -5.9663   AGCAAGAATTCAAAA              CCCGCT TAATC AGCGGG              TTTTTTTTGGTCTTT 100 49
SH03_RS06980 1419126 .. 1419139 +  -6.7  -3.91801   TAAACAACCGTCGCT               TTGCG CCGC CGCAA                TTATTATGATGTTTT  69 3
        tatE 1419527 .. 1419544 + -11.3  -5.24129   GTTCGATACAAAAAA             CCCGCTT CAAA AAGCGGG              TTTTTTATCAGACAG 100 72
SH03_RS07000 1422230 .. 1422251 +  -5.1    -3.494   CAACATAGACACCTG           GCGCGTC AGCCCGAG GATGCGC            TTCTATACCCAGTTC  56 340
SH03_RS07070 1435983 .. 1436001 +   -11  -3.30039   GATACAGGTCGAGAG             CCTGTCGG AGA TCGACAGG             TCTTCCTTCTCCGTA  76 178
SH03_RS07080 NONE
SH03_RS07085 1439384 .. 1439400 +  -4.4  -3.61178   GCTTTACGGGTGTCG              GGTTTG ACCCC CAGACC              TTTGAGGTAGATCCA  55 237
SH03_RS07095 NONE
SH03_RS07100 1442008 .. 1442051 + -18.8  -3.91144   ACGATGTGTTTTTTG CGCCGATGCCGGATGCAGCG TTTA CGCCGCATCCGGCAGCCGTG TTTATGGGATCTCAA 100 40
        ubiF 1456734 .. 1456749 + -10.4  -5.22312   GCAGAAAAGCAAAAA              GCTCGC CGAA GCGAGC               TTTTTTAATGTGGCT 100 153
SH03_RS07230 1466271 .. 1466293 +   -12  -6.15828   ATCCAACAATGACAA           GCGGTGGAGA TCT TCTCTGCCGC           TTTTTTTTTCATCAA 100 76
SH03_RS07235 1468288 .. 1468304 + -10.8   -5.4588   GCAAACAATCCAAAA              CGCCGC GTTCA GCGGCG              TTTTTTCTGCTTTTC 100 226
        chiP 1470075 .. 1470104 +  -7.8  -3.59627   CCATCTTCTGATGCC       CGACGCGGCAGGT TTTGT GCCTGCCGCA-CG       TTTGAGGAATTTGCT  70 30
SH03_RS07245 1470493 .. 1470510 + -11.3   -4.5442   CCCTTGCATAAAAAA             GCCAACC CGCA GGTTGGC              TTTTCTCGTTCAGGC 100 72
SH03_RS07260 1471498 .. 1471514 +  -6.5  -2.78495   TGGTGCCCAATGCGT              CGCAGAA ATA TTCGGCG              TAATCTTCCTGGTCA  51 248
SH03_RS07280 NONE
SH03_RS07285 1475547 .. 1475566 + -11.4   -5.1287   CATTTAATAAAAAAA            GGGCGGTC GCAA GATCGCCC             TTTTTTACGTATGAC 100 44
SH03_RS07290 1476285 .. 1476299 +  -2.8  -3.80862   ACATGTCTTATTGCG               TGAATG TTT CTTTCA               TTTGATACTGCATTT  52 74
SH03_RS07315 1481328 .. 1481347 +  -6.4  -3.95584   TGTTTAAGATAAAAA            GCCGTATT TATT ATTACGGC             TTTAATTAATAAAAG  67 183
SH03_RS07350 1489697 .. 1489718 + -17.3  -5.36441   TGAATACATTGAAAA           CCGCCAGCG GAAA CGCTGGCGG            TTTTTTGTATCAGGA 100 52
SH03_RS07355 1494090 .. 1494101 +  -4.4  -2.80622   TTATTAGATTTGTAT                TCAC CGGA GTGA                 TGTAATGAAATATAT  46 9
SH03_RS07360 NONE
SH03_RS07365 NONE
SH03_RS07370 1496718 .. 1496732 +  -2.1  -3.37796   TACTTATTGTCTAAA               GCTGT TTTTC ATAGC               TTATACATGATCAAA  45 194
SH03_RS07375 1497098 .. 1497112 +  -2.1  -3.37796   TCCTTATTACCTAAA               GCTGT TTTTC ATAGC               TTATACATGATCAAA  45 94
SH03_RS07380 NONE
SH03_RS07385 1499251 .. 1499266 +  -4.7  -3.17392   GCTTTCGTAAATTTG              TCCTG CTACAA CAGGA               TTAACTTCACAAATA  51 93
SH03_RS07390 NONE
SH03_RS07395 1501414 .. 1501429 +    -6  -4.02132   GGCCTATTAAGACTC              CAGCGC CAGC GCGCGG               TTTCTGAATTTCAGC  66 184
SH03_RS07405 NONE
SH03_RS07410 NONE
SH03_RS07415 NONE
SH03_RS07420 NONE
SH03_RS07425 NONE
SH03_RS07460 1515108 .. 1515118 +  -5.4  -4.32436   CTTCATAACTTTTAC                 GCAT TAT ATGC                 TTTTCCTGGTAATGT  68 162
        sdhC 1515875 .. 1515888 +  -3.1  -2.78384   CGTGCTTTCACTTCT               CGCAGG AGT CCT-CG               TATGGTAAGCAACGC  43 4
        sdhD NONE
        sdhA NONE
        sdhB 1518755 .. 1518801 + -10.7  -2.57931   TAGGCCTGATAAGAC GCGCAAGCGTCGCATCAGGCA ACCAG TGCCGGATGCGGCGTGAACGC CTTATCCGGCCTACA  76 45
SH03_RS07485 NONE
SH03_RS07490 NONE
SH03_RS07495 1523142 .. 1523155 +  -8.1  -3.30124   ATTGAAGCCTGATGC               GACGC TGAC GCGTC                TTATCAGGCCTACGG  66 98
        sucC NONE
SH03_RS07505 1525455 .. 1525472 + -11.3  -5.39755   GGTTTCGACATGGTT             GGCCATC GTAT GATGGCC              TTTTTTGTGCTTATC 100 101
SH03_RS07515 NONE
SH03_RS07520 NONE
SH03_RS07525 1531180 .. 1531196 +  -5.3  -2.55213   TAACCCTGGGTGAGT              TAATTAT AAT ATAATTA              TAAGTTAACTAAATG  49 12
SH03_RS07530 NONE
SH03_RS07535 NONE
SH03_RS07540 NONE
SH03_RS07545 1534953 .. 1534978 +  -7.6  -4.63184   AATTCTCTTTAAAAA         ATTATGGGCC GCTCCA GGCCCATAAA          TTTTTACGCTCCCTT  86 46
SH03_RS07550 NONE
SH03_RS07555 NONE
SH03_RS07560 NONE
        tolA 1537975 .. 1537988 +  -2.3  -2.70544   GGTCAACATCAGGCA               CCGGT TGCC ACGGG                GTTCTGGTAGTTTTG  40 63
        tolB NONE
SH03_RS07575 1539924 .. 1539935 +  -2.2  -2.52896   GGTTTACTAAGAGAA                TTGC ATGA GCAG                 TAACTTCAGACATCA  39 31
SH03_RS07580 1540731 .. 1540758 + -10.7  -2.79302   GTAATGCATAACACA        CGACCAGAAGT CGCATT ATTTCTGGTCG         TGTCGTGCGAATCAT  77 37
SH03_RS07585 1541060 .. 1541072 +  -6.3  -3.46602   CTGCACGACCCACCA                CTAAC ATA GTTAG                TTGTAGTATCCAGCG  61 126
SH03_RS07590 1541165 .. 1541178 +  -2.3  -3.10409   CGATCCCGTCATCAC               CCACC ACCG GGTCG                TTAGCTCAGTTGGTA  43 20
SH03_RS07595 1541340 .. 1541360 +  -5.4  -3.06302   AGTCATCCTGCACGA            CCCACC ACTAATGAC GGTGGG            TTCGGTGGAAGTAGT  52 117
SH03_RS07600 NONE
SH03_RS07605 1541685 .. 1541709 +  -3.6  -2.56596   AGTAAAAATCTTTCA         GGTAAC-ACCC GTAT GGGTCGTTAGC          TCAGTTGGTAGAGCA  44 158
SH03_RS07610 1541769 .. 1541786 +  -4.1  -3.21099   CGAATCCTGCACGAC             CCACC AATTTAAA GGTGG              TTACTGGTAGAGAAC  49 20
SH03_RS07615 1541985 .. 1542015 + -14.9  -2.90212   GCACGACCCACCAAT       GTAAAAAAGCGCC CTAAA GGCGCTTTTTTGC       TATCTGCGATACTCA 100 28
SH03_RS07620 1543470 .. 1543483 +  -6.7  -3.53224   ATAACGAATAATAAG               GCGTA ACGT TACGC                TTTGGGGGAAAGATG  63 37
SH03_RS07625 1544307 .. 1544332 +  -2.5  -3.13299   GAATGGTGGCGTGCT         CAATCTGATAG TGAT CCATCAGGTAG          TGTTGGATCTGATCC  43 117
SH03_RS07645 1547128 .. 1547148 +  -8.3    -4.208   GTTAGCAACAAAAAA            GCCGACT CACTTGC AGTCGGC            TTTCTCATTTTAAAC  79 138
SH03_RS07685 1555262 .. 1555279 +  -8.4  -5.35224   CATTGATTCCCTGAA             TGCCCG CTTAGT CGGGCA              TTTTCTTTTTCTCAA 100 35
        modA NONE
        modB NONE
        modC 1558299 .. 1558319 +  -4.6  -3.53012   GGGCGAACTTCCATA            CGGCGTTA ACTTG TTGCGCCG            TTTCAGCCAGAGAAG  53 382
SH03_RS07710 1559924 .. 1559947 + -15.3  -3.10053   TAACCGCTGATTTAC          CCGGCGCAG TCTCTC CTGCGCCGG           TGTATTAACCTATCT 100 38
SH03_RS07720 NONE
SH03_RS07725 1563794 .. 1563817 + -13.2  -2.89055   TCCATTTATTATCTT          TCTGCGCACT TCAC GGTGCGCAGA           TATCTGGAGCATTTG  91 169
SH03_RS07730 1566116 .. 1566144 + -11.8  -2.73468   CCATGTGAATGTAGG        TCGCATTCGGCA CTTAT TGTCGGATGCGA        TGCTTGCGCATCTTA  83 47
SH03_RS07750 NONE
SH03_RS07755 NONE
SH03_RS07760 NONE
        bioD 1573669 .. 1573684 +  -3.2  -4.52589   TTGCTTTGGGGATAA              C-CCGGT AAG GCCGGAG              TTTTATCTCGCCACA  63 417
SH03_RS07770 1575968 .. 1576025 + -15.5  -3.12482   GCAATATATTGAATT TGCGCGGTTTGTAGGCCGGATAAGGCG TTCA CGCCGCATCCGGCATAAACAACGCGCA CTTTGTCTTCAATAG 100 116
        moaA NONE
SH03_RS07790 NONE
        moaC NONE
        moaD NONE
        moaE 1580086 .. 1580116 +  -3.8  -3.55761   CTGGTAGTTTTTTGT       TAGCCGGATAAGGC ACC GCTGCGTCCGGCAA       TTTCACCGCTCAGTA  51 34
SH03_RS07810 1580938 .. 1580956 +  -8.1  -5.84381   TTTTCACCATCACTA             TCCCGGC CATGT GTCGGGA             TTTTTTTCTTACTAA 100 45
SH03_RS07815 1582231 .. 1582241 +  -2.4  -4.25074   CGAATTTCCATGAAG                 GCAG CAC CAGC                 TTTTGCCCTTTGATG  58 420
SH03_RS07835 1585762 .. 1585772 +  -8.2  -3.57263   GTGGCGACAATTAAC                 GCCG GTA CGGC                 TTTGCCGATGAAGAT  69 417
SH03_RS07865 1592687 .. 1592716 + -13.5  -2.71712   TGCATGCTTTTGTAG       GCCGGATAAGGCG TTTA CGCCGCATCCGGC        ATTTCACAACAAGCA  93 146
        dinG 1595533 .. 1595546 +  -9.5  -3.25223   AAAACGAAATCCCCA               CGCCG TCGG CGGCG                TTAATGATGTGAGTC  74 8
SH03_RS07880 1596552 .. 1596575 + -12.5  -4.07568   TTAATTCTTTTCTCA          GCCGGATGA GCCATG TCATCCGGC           TTTTACCCCACCGCA 100 37
SH03_RS07885 1597931 .. 1597977 + -15.1  -2.62463   TAGGCCTGATAAGAC GCGGTAGCGTCGCATCAGGCA TCTGT TGCCGGATGCGGCGTAAACGC CTTATCCGTCCTACG 100 190
SH03_RS07915 1603832 .. 1603843 +  -4.4  -4.32201   CCAATAATCAGCCCG                CGAA TTTC TTCG                 TTTTCCATTAATTCC  67 269
        ompX 1611311 .. 1611340 + -10.1  -4.70879   TCACTTTGGTGATAT       AAAAAATCCGCCT CTCG GGGCGGATTTTTG        TTTTTAAGGTTTCGG 100 41
SH03_RS07970 NONE
SH03_RS07975 1615114 .. 1615132 +   -11  -4.59424   CTGGCAAATAAAAAA             GGCGGATT ATG AGTCCGCC             TTTTGCTTTAAGTTT 100 44
SH03_RS07985 1618229 .. 1618239 +  -8.2  -4.62069   CGCGGGAAGTCGCCC                 GGCG ATG CGCC                 TTTTTCCAGTGCGGC  88 369
SH03_RS08010 1624667 .. 1624687 + -11.1  -3.30124   TCATAAATTGCTGAT            GACGTGGCG GAG TGCCGCGTC            TTATCAGGCCTGGAG  81 58
SH03_RS08025 NONE
SH03_RS08030 NONE
SH03_RS08035 NONE
SH03_RS08040 NONE
SH03_RS08045 1633179 .. 1633191 +  -3.4  -2.58398   CCTCACAGGAAATTA                TTGC CCTAA GCAA                GTGTTGTAACTTTCT  42 73
SH03_RS08050 NONE
SH03_RS08055 1637006 .. 1637031 + -13.3  -2.60244   TAATCATTATTCGCA         GGCCGGACAAA TGAT TTTGCCCGGCC          TGAATTAATTAAACC  93 38
        bssR 1638969 .. 1638989 + -12.6  -3.48703   AGGCCTGAAAACTAA            GGGGGAGA AAGCG TCTCCCCC            TTCATGTTTAAGTTT 100 33
SH03_RS08070 1640542 .. 1640563 +  -2.9   -3.3581   GCTTCCGCACGACGT           GCCGGTG AGTCGATC CACAGGC            GTTTTTGCCCGTACT  47 380
SH03_RS08080 1642271 .. 1642295 + -13.6  -3.39862   TTAATCTTCTGATAA          CCGGATGGCG CGAAA CGTCATCCGG          TTATACGTCATTAAT 100 37
SH03_RS08095 1645241 .. 1645267 +  -8.7  -3.37464   CGAAGGGTAAAAAAA         TGCCTGACTGC TTTGT GCGATCAGGCA         TTCTCGAATTAATGG  71 31
SH03_RS08115 1648407 .. 1648425 +  -7.4  -3.29043   ATTAAGACTGATGCC             CTGCGGAA AAG TTCTGCGG             TTGTGCAAAAAAATT  64 143
SH03_RS08125 1650798 .. 1650814 +  -9.4  -3.29511   GAAAAAATCAGTAAA              GCCCTC AACGC GAGGGC              TTGTCAGACGATCAG  74 27
SH03_RS08135 NONE
SH03_RS08140 NONE
SH03_RS08145 1653181 .. 1653192 +  -3.6  -2.78216   TACGACAGAATATTG                CCTG AAAA CGGG                 TGGTTAGTCGCAATC  45 7
SH03_RS08150 1653771 .. 1653814 + -11.8  -3.65046   TCCACTGATAACTCC TTTCG-AGCACGCAGTCGCTG GTG CAGTGGCTGCGCGCTGCAAAA TTATCTGCTGTTTTT  93 33
SH03_RS08155 NONE
SH03_RS08160 1655284 .. 1655300 +    -3  -3.05384   CAATTCGCACCATTA             TG-GTGC GCTT GCACACA              TTCAATGCCGGAGAG  44 83
        potG NONE
SH03_RS08170 NONE
SH03_RS08175 1658289 .. 1658313 + -12.2  -4.25104   GCCAACCTGGCTACA          TAATGCCGCG CATGT CGCGGCATTG          TTTTCATGGAAGACG 100 55
SH03_RS08180 NONE
        rumB 1660150 .. 1660163 +  -9.5  -3.98172   TGTCATCAGTCTCAA               GCCGC GGTT GCGGC                TTTCTGAATCTTACT  83 200
SH03_RS08220 NONE
SH03_RS08225 1666206 .. 1666234 +    -8  -4.30978   TCAAAATTCAACTTG        GAGACGCCGTAG TGGGT CAGCGGCGGCTC        TTTTGCTGACTTGCG  78 158
SH03_RS08275 1678483 .. 1678532 +  -6.6  -5.14965   AACATCGTGGCCATT TGTGGCTGAATAGCGTCGAGCATCT CAT AGC-GC-CGACGGTATTCAGCC-CG TTTTTTACTGGCGAT  88 47
SH03_RS08285 NONE
SH03_RS08290 1682639 .. 1682659 + -12.6  -4.35926   TTTTTGAGATAAAAA            TGCCAGCC GATCG GGCTGGCA            TTTTGCCTTTAGGAT 100 41
        clpS NONE
        clpA 1685896 .. 1685923 +   -15  -5.38054   AGGTAGGTTGGTCAA        GTCCGTAATCTC GAAA GAGGTTACGGAC         TTTTTGTTTATGGGG 100 51
SH03_RS08340 1693476 .. 1693505 + -13.7  -2.75577   TGTTAATCCATACAG       CAACAGTACTGGG GTAA CCTGGTACTGTTG        TCCGTTTTAGCATCG  93 82
SH03_RS08345 1697556 .. 1697591 +  -9.6  -2.89564   TAACTAATGCATCGT    ATGCCGGATAAGGCGC GGTA GCGTCGCATCCGGCAC     TCTATCAACTGAAAA  70 38
        lolA 1698321 .. 1698342 +  -2.3  -3.37634   GTAAGTAGAGGCACC           TGAGTGAGCA ATC TG-TCGCTCG           ATTTTTCGGATAATA  45 33
SH03_RS08355 1699670 .. 1699684 +    -5  -3.48053   ACGCTACCGTTAATG               TTATCG TTG CGGTAA               TGTTGTTACTGTATC  55 28
SH03_RS08360 1701076 .. 1701089 +  -9.5  -5.72616   TTCTGAATCTAAAAA               GCGCC TGCG GGCGC                TTTTTTTGTCTCCCT 100 51
SH03_RS08365 NONE
SH03_RS08370 NONE
SH03_RS08375 1705236 .. 1705253 + -10.5  -4.14927   AGCTAATCATAACAA             CCGGGGT TTCG GCCCCGG              TTCTCTTTTATTTCT  91 35
SH03_RS08385 1707360 .. 1707391 + -13.2  -5.82036   TGTAAATGAATTCAA      GCAGAGTGTGAA CTTACTGT TTCACACTCTGC       TTTTTTGTTTCTTCT 100 36
SH03_RS08390 1709148 .. 1709172 +    -8  -3.14344   CACATTCTAAACGAC         CAGTATCAAGG TACT CCTTGAT-CTG          TTCATAGAGCAGATA  61 184
SH03_RS08400 1710634 .. 1710657 + -12.5  -3.53761   GCGCGGAATAAAAAA          GCGGCAACT CAATAA AGTTGCCGC           TTTACGGGGAAATTA 100 71
SH03_RS08425 1717926 .. 1717953 +  -4.8  -3.14132   AGGAATAATGTATTA        CCTGTGGTCG CAATCGAT TGACCGCGGG         TTAATAGCAACGCAA  51 167
SH03_RS08430 1719091 .. 1719111 + -12.6   -5.4659   GAAATTTTGCTTAAT            CCCCACAG CCAGC CTGTGGGG            TTTTTATTTCTGTTG 100 45
SH03_RS08435 1720469 .. 1720487 +  -8.8  -5.75945   CTTTCTTTATCAAAA             CGTCGGCA CAT TGTCGGCG             TTTTTTTTCGGACCT 100 69
SH03_RS08440 1721474 .. 1721494 +  -8.9  -3.66784   AACGATTTGTGGCGT            CGGCGCGTA TAA TGCGCGCGG            TTATGTTAACGGTAC  75 141
         cmk 1722235 .. 1722259 +  -4.9  -3.06696   CGAATTTGCAGTACC          CCCGTTGCAAT GGA ATGACAGCGGG          TATGTTAAACAACCC  50 46
        rpsA 1724084 .. 1724101 + -14.1  -3.18264   GTAATCAAGCACTAA             GGGCGGC TACG GCCGCCC              TTAATCAATGCAGCA 100 111
        ihfB 1724466 .. 1724494 + -13.3   -3.0636   CTCAAACTTGAACGA        GAGAAAAGCACCT GTC GGGTGCTTTTTTC        ATTTCTCTAATCTGG 100 49
SH03_RS08460 NONE
SH03_RS08465 NONE
        lpxK 1729686 .. 1729698 +  -4.7  -3.20901   TCTGGCAACTAGTTA                CGCCG CGG CAGCG                TTCGATTGATGGAGT  51 29
SH03_RS08475 NONE
SH03_RS08480 NONE
SH03_RS08485 1731968 .. 1731981 +  -5.3  -4.35675   ATTTTGGGAGGAGTG               TCGTA CCGT TACGA                TTTTCCTCAATTTTT  68 65
SH03_RS08490 1732965 .. 1732981 +  -3.6  -4.09685   AATCACTCTTGCCGT              GGCTCG CCTGA CGAACC              TTTTAGCCACTGCCA  60 15
SH03_RS08500 NONE
SH03_RS08505 NONE
SH03_RS08510 NONE
        mukB 1741123 .. 1741140 + -12.7  -5.26119   GCGAGTTAAAATTAA             GGCGGCA GCAA TGCCGCC              TTTTCTTTTTCCGAA 100 32
SH03_RS08520 1743290 .. 1743306 +  -5.7  -3.13432   GCGATTCTCTGCAGC              CCCCGTC ACT GCTGGGG              TTGAGTCATCTTGAC  55 91
SH03_RS08525 NONE
SH03_RS08530 1744814 .. 1744831 + -12.7  -3.75772   TTGTCATCAGTCTCA             GCCCGCT TTTC AGCGGGC              TTCATTGTTTTTAAT 100 212
SH03_RS08540 1746285 .. 1746299 +  -2.1  -3.25719   ACGCCCAGTTTGTTG               TCAGA ATCGA TCTGG               TTGATGATGTAGTCA  43 102
        pepN 1753569 .. 1753604 + -13.3  -2.77431   CACTGGCTTGATAAA    TAACCGAATGGCGGC AATAGC GCCGCCATTCGGGGA     ATTTACCCCTGTTTT  93 30
SH03_RS08590 1758769 .. 1758790 + -15.9  -2.62118   TTTTATTAATTAGTA           CCCCTCCAG TGTT CTGGAGGGG            ATATTCATATTTTTT 100 57
SH03_RS08595 NONE
SH03_RS08600 NONE
SH03_RS08605 NONE
SH03_RS08610 NONE
SH03_RS08615 NONE
SH03_RS08620 1764996 .. 1765010 +  -2.8  -5.75342   GCCCTGAAACAGGTT               CGGAAA ACG TTTGCG               TTTTTTTTGCCGCAG  86 34
SH03_RS08625 1766130 .. 1766173 + -10.6  -3.22448   CTTCGAATTCCTCTT TATAAGATAATCAGGGCT TTATTTTC AGCCCTGGTTGTTTTATA TTCATCGCTGTTGCT  77 47
SH03_RS08630 1767003 .. 1767019 +  -4.4  -3.90922   GATTTTCTAATTGCT              CCAGCA ACACC TGTTGG              TTATTTCCACGAAAT  60 204
        rlmL NONE
SH03_RS08645 1772281 .. 1772295 +  -2.8  -2.69799   TATCAGGCATGAAAA               CCAACA CTT TGTTAG               TCATCTGTAAAATAG  41 105
SH03_RS08650 NONE
SH03_RS08655 NONE
SH03_RS08660 1775812 .. 1775838 + -10.8  -5.76633   GATTTGTAAATATAA         CCGTCTCCGGTA TGT TGCCTGAGGCGG         TTTTTTTGTCTCTAA 100 48
SH03_RS08665 1776229 .. 1776255 + -15.2  -2.51207   TCTGTCTCTTTAAAA         AGAAACCTCCGC ATT GCGGAGGTTTCG         CCTTTTGATACTCTG 100 42
SH03_RS08680 1779307 .. 1779322 + -11.8  -4.82901   TAAAGGCAAAAAAAA              CCCCGC AGCA GCGGGG               TTTTTCTACCAGACG 100 65
SH03_RS08690 1781040 .. 1781069 +  -3.5  -3.14881   CCGACTCAGTTTTTG       TTGCGGTGTTAAC CAGA GTTGCCAGCGCGA        TTGCTGACCGAGTTG  47 309
SH03_RS08700 1782076 .. 1782089 +  -3.1  -3.11634   TACGCCGAAACAGGA               GTTTC CTGC GGAAC                TTGAGTAATCTGGCG  46 4
        helD 1786977 .. 1787005 +    -6  -3.09327   CTGGATTATGAAGTC       TGCCG-TTGCCAC GTTG GTGGCGACCGGAA        TGTTCCATACCGTCG  53 147
SH03_RS08735 1788694 .. 1788721 + -17.1   -4.1673   TGGCCAAATAAAAAA        TCCCCGGAAGG CAAAAA CCTTCCGGGGA         TTTGTTCAGGGATTA 100 30
SH03_RS08750 1790733 .. 1790764 +    -8  -5.06414   TTAGCCGGACCTTTC      GGAAACAGTCGGTA TAAA TAGCGGCTGTTACC       TTTTTCTTCGCCAAA  91 86
SH03_RS08770 NONE
SH03_RS08775 NONE
SH03_RS08780 NONE
SH03_RS08785 NONE
SH03_RS08790 NONE
SH03_RS08795 1797989 .. 1798002 +  -3.1  -3.57144   GCAATCGGCGAATAC               CTCTG GTCG TAGAG                TTTCAGGATAAAGAG  49 78
SH03_RS08800 NONE
SH03_RS08805 NONE
SH03_RS08810 NONE
SH03_RS08815 1802315 .. 1802351 +  -2.8  -3.95448   AGAACTGTCTAATGC   GTAGACCGGAAAAGGCG TTCA CGCCGCATCCGGCC-AC    TTTCAGTTTTACTCT  54 95
SH03_RS08860 1811320 .. 1811335 +    -4  -3.53091   AACATTTGCCGCTGT              TGGTCCT CGC AGG-CCA              TTTACGCGGCAAAAT  51 485
SH03_RS08870 1812175 .. 1812188 +  -3.1   -2.7263   GCAAATACGCACTGA               CCATGC GCC GC-TGG               ATTTCACAAAATAAT  42 197
SH03_RS08875 NONE
SH03_RS08880 1812575 .. 1812607 +  -7.8  -3.79909   AAATAATGTGATTTT     GT-GAACATCACCCC GTGC GAGGTGATGTTCCGC      TTGTTGCTAATTTAG  72 30
SH03_RS08895 1817965 .. 1817977 +  -4.7   -2.8478   CGTACTACCAGTTCG                CGCAG TTC CAGCG                GTTTGGTGACGTAAT  47 371
SH03_RS08905 NONE
SH03_RS08910 NONE
        torD 1822901 .. 1822931 +   -14  -2.73364   ATGAGCTACAAACCG       GGAAAGCCGCTGGC GCA GCAGGCGGTTTTCC       TGCTTCAGGTGCGCA  95 198
SH03_RS08930 1825766 .. 1825794 + -10.3  -4.61633   GAGGCAGGGGCTAAT        CAGGCATAGTTTG CGT CAAACCTTGCCTG        TTTTTGAAGATGTAT 100 169
SH03_RS08935 1827160 .. 1827190 +  -6.7   -2.7563   GCGGTGAAATAACAG       AAAACTCCCCCGC GAGAA GCGGGGGAGTCGC       TGGTTAAACGTTTTT  57 29
SH03_RS08950 NONE
SH03_RS08955 1828814 .. 1828832 + -13.1  -4.84918   TGTCAACAATCTGCA             CCGCCGG TAACC CCGGCGG             TTTTCTGTTTATGGC 100 255
SH03_RS08995 1835212 .. 1835245 + -10.9  -2.63585   TTCGACCACGTTAAA     GATGCCGGAGGAGGT TGTA ACATCCTCCGGCTAC      CTGTTTAACCTATAG  76 27
SH03_RS09005 1839587 .. 1839613 +  -4.5  -2.62111   TTCCGGTGGCAGATA        TAACGGCAA-GT TTCG ACATTGCCGATA         ATAATTTTTTGGAGA  48 136
SH03_RS09010 1841241 .. 1841266 + -14.7  -2.62515   TGCAGGGAGCGCGCA         GGGGGCGGC CAATCGCC GCCGCCCCC          TGCTGTCCCGGCCTT 100 123
SH03_RS09020 1842526 .. 1842537 +  -4.4  -3.34344   CGTAACAAATACGAC                GCAA ACTC TTGC                 TTAGTTACAACATAC  51 36
SH03_RS09025 NONE
SH03_RS09030 1845021 .. 1845034 +  -8.1   -3.4252   GCAGATGCCTGATGC               GACGC TTGC GCGTC                TTATCATGCCTACAA  68 69
SH03_RS09040 1846401 .. 1846425 + -13.6  -4.33907   AGTGTGTTATCGGTG          CAGAGCCCGG GCGAA CCGGGCTTTG          TTTTGGGTGTTTATG 100 40
SH03_RS09065 1854610 .. 1854620 +  -3.2  -4.24123   GGACACAGGCCTAAG                 CGAG GTT CTTG                 TTTTCAAATTGTTCC  58 71
SH03_RS09080 NONE
SH03_RS09085 1857319 .. 1857338 +  -7.8  -3.58256   ATATACGAAAAAAAA            GCCCGTAC TTTC GTACGAGC             TCTTCTTTAAATATG  70 185
SH03_RS09090 1857681 .. 1857700 +  -7.8  -3.58256   ATATACGAAAAAAAA            GCCCGTAC TTTC GTACGAGC             TCTTCTTTAAATATG  70 177
        ghrA 1859349 .. 1859370 +  -7.3  -3.05384   AATAAAGCATCAGGA           TTCCTGCTA TCCT TGGCGGGAA            TTGAATACAGGAGAG  61 39
SH03_RS09105 NONE
SH03_RS09110 1860731 .. 1860747 +  -3.7  -3.07622   CGTCACTCATAACTG              CAACGGA TAA TTTGTTG              TTGCATAAAATGTGT  48 51
SH03_RS09115 1861332 .. 1861350 +  -7.4   -5.4251   CTTAAACAGTAAAAT             GCCGGA TGATAAT TCCGGC             TTTTTTATCTGTCAG  95 59
        csgB NONE
        csgA 1865436 .. 1865451 + -10.4  -5.75342   TTTGTATTACAGAAA              CAGGGC GCAA GCCCTG               TTTTTTTTCGGGAGA 100 48
        csgC NONE
SH03_RS09160 1866326 .. 1866340 +  -5.7  -2.56181   AGAAGGTGTAAGGAG               GCGTT ATGAA AACGC               GTATTCATGTTGTGC  52 115
SH03_RS09165 NONE
SH03_RS09170 1868268 .. 1868278 +  -3.2  -3.83568   TGGCGTCGATATTGC                 CCGT GGA ATGG                 TTATTGTAAATGTGG  53 6
        mdoG NONE
SH03_RS09195 1874048 .. 1874066 +   -11  -5.40072   ACGAGCCAATAAAAA             TACCGGCG TTA TGCCGGTA             TTTTTTTACGAAAGA 100 156
SH03_RS09200 1874806 .. 1874832 +    -8  -3.06183   GGTATTCGACGACGA         CGTAGACTGTTC CAT GAATAGACTGCG         TTGAATAACACTACG  59 514
SH03_RS09225 1878376 .. 1878402 + -10.9  -2.77005   AACAGAATAAATATC         ATTGCCGGATG CGTGC CATCCGGCAAC         ATTTCACGCTTACTT  77 31
SH03_RS09280 NONE
SH03_RS09285 NONE
SH03_RS09290 1888303 .. 1888319 + -13.7  -4.11692   ATTCGCCTCTTTCAG              CGCCTGC CTT GCAGGCG              TTTTGCCCGTGGGTC 100 88
SH03_RS09295 1889892 .. 1889918 + -14.4  -2.75074   ACGGTGTAACAATGC         ATTCCGGCCTGC AGT GCAGGCCGGAGA         TAATCTTCAGATCGA 100 32
        flgB NONE
        flgC NONE
        flgD 1893078 .. 1893089 +  -2.2  -3.22113   CTTCACATTTCAGGA                GTCA GTCA TGGC                 CTTTTCTCAAGCGGT  43 43
        flgE NONE
        flgF 1895095 .. 1895109 +  -4.2  -2.94633   CATGACAAGTATAAG               TTGCCC GAT GCGCAA               GTTTATCGGGTCTAT  47 52
        flgG 1896030 .. 1896048 +  -8.1  -3.96337   AACTCTAAGGCTTAA             CCGGTGG CAGGT TCACCGG             TTTACTGATTTTTGA  74 33
        flgH NONE
        flgI NONE
        flgJ NONE
        flgK NONE
        flgL 1901539 .. 1901567 +  -8.8  -5.54264   TGGGTATGTTTTGTC        TGCCTGCTCTGG GATCG CTGGGGCGGGCA        TTTTTTTGCCTATTT 100 67
SH03_RS09375 NONE
SH03_RS09380 1906443 .. 1906454 +  -5.8  -2.72144   GATAATGGGCGGTTG                GCCT GATA AGGC                 GTTTACGCCGCATCA  52 58
SH03_RS09390 NONE
        rpmF 1908038 .. 1908083 +  -4.2  -4.07568   ACCGCGGCCGCAAGG TCATCGCTAAG--TAATCACGC ATCT GCGTGATGAAGCTTAGTGAGGA TTTTCCCCAGGCAAC  59 12
SH03_RS09400 1909210 .. 1909227 +  -5.5  -3.57263   TGCGGTAGCAGGACG             CTGCCAG CGAA CTCGCAG              TTTGCAAGTGACGGT  57 33
SH03_RS09405 1910199 .. 1910209 +  -2.4  -2.92267   CGGTGGATTCACCTG                 GGGC TCC GCGC                 TGGTTCGTTTCTAGG  42 1
SH03_RS09410 NONE
        fabG 1911944 .. 1911958 +  -7.8  -2.62642   AAAATGCTCATGTTG               CGCGCA GTC TGCGTG               GTTATGAGTAATAAT  60 54
SH03_RS09420 1912371 .. 1912397 + -13.1  -5.02287   GGCGTAAGTGAACAT        CTCCAGGCGGTC GTTC GACCGCCTG-AG         TTTTATCTTTTTGTC 100 34
SH03_RS09425 1913717 .. 1913732 +  -8.2  -5.52096   TCCACCCTTATAAAA              GGTCCG CTTG CGGGCC               TTTTTTCTTAGCTTT 100 51
SH03_RS09430 NONE
SH03_RS09435 NONE
SH03_RS09440 NONE
SH03_RS09445 NONE
SH03_RS09450 1918087 .. 1918105 +  -4.6  -2.79098   AATCCATCCGTTGAA             TGAGTTTT TTT AAAGCTCG             TAATTAATGGCTAAA  49 27
SH03_RS09455 1919838 .. 1919855 + -12.7  -5.04987   CGTTGGGGAGACTAA             GGCAGCC AGAT GGCTGCC              TTTTTTACAGGTGTT 100 50
SH03_RS09465 NONE
SH03_RS09470 NONE
SH03_RS09475 NONE
        thiK NONE
SH03_RS09485 NONE
SH03_RS09490 1926446 .. 1926459 +  -3.9  -4.34402   TTTCAGCAACAAAAC               TTGAT TAAC ATCAA                TTTTGGTATGACCAA  63 275
SH03_RS09495 1927955 .. 1927971 +  -2.2  -3.48924   GCCCTTGAGGAACAG              CGCG ATCGGCAGC CGCG              TTGTATCAGGCATCC  47 80
SH03_RS09500 1928672 .. 1928698 + -10.1  -5.43866   GTACTCTGCAATTTG         GCCCCTCATTC GCTCA GGCTGAGGGGC         TTTTTTTGCGACTTA 100 48
SH03_RS09510 1929880 .. 1929906 + -18.8  -5.60993   CTACTGCTGATTTTT         TCCCCGCGACAT GCC GTGTCGCGGGGA         TTTTTTTATCCGGGC 100 64
SH03_RS09530 NONE
        lolD 1937829 .. 1937845 +  -5.1  -2.98947   CTGATGGGGGCGGAG              TAATGGC GAT GCCTTTA              TCGTTATTAATTGGC  52 23
SH03_RS09540 NONE
SH03_RS09545 NONE
SH03_RS09550 1941238 .. 1941254 +  -6.5  -4.36063   AACCTAATGTGTTGG              TGCTGCC GGG GGGAGCA              TTTTCATGCTGTTGT  72 393
SH03_RS09590 1947589 .. 1947617 +    -9  -3.06133   GGAAGTAAGCGAAAA       G--GGATGCGGCAT GTG ATGCCGCATCCGGC       TTAAATCCAAACTTA  68 33
SH03_RS09635 1956907 .. 1956931 +   -10  -5.05113   ATGTGTTAAATATTG          AAACGGGCGT ATAAC ACGCCCGTTG          TTTTATTTATGTGGA 100 48
SH03_RS09665 1961341 .. 1961357 +  -2.2  -3.12999   TGAATAATGCAACAG              CCTGAT TATTT AACAGG              TTAGCTATGAAGTCG  43 34
SH03_RS09670 NONE
SH03_RS09675 NONE
SH03_RS09680 1962404 .. 1962445 + -23.3  -2.62616   ATGTCCGCAATATCA GGTGTCAAGAATGGAGAGT TCTC GCTCTCCATTCTTGACGCC  TGATATCCCGCCTAA 100 126
SH03_RS09685 NONE
SH03_RS09690 1964605 .. 1964627 +    -7  -5.03994   TGCGCAAATAGTTGT           CAACCCTGGT GTT ATCACGGTTG           TTTTTATATATCACC  90 122
SH03_RS22870 1967881 .. 1967892 +  -5.8  -2.77899   TTTTAATATTGTAGT                CCTG CGCC CAGG                 TCATTGGTGCGAAAA  51 351
SH03_RS09725 1969230 .. 1969245 + -10.4  -4.54727   CCATCAACGATTAAA              CTGCGC TTCG GCGCAG               TTTTCGTTTACAGGA 100 41
SH03_RS09745 1972352 .. 1972366 + -11.4  -2.56046   CATTAACGTTTATGA               CGGGGA GAG TCCCCG               TCGGTTGACATTTAC  79 102
SH03_RS09755 NONE
SH03_RS09760 1973322 .. 1973352 +  -2.4  -4.34402   ACAAATAACCGATAT       CCGGCGGTGGCA TTATCTT TGTCGGCGCGGG       TTTTCATATCCACGA  58 33
SH03_RS09765 1974049 .. 1974077 +  -8.9  -3.09015   CGCGTTTTGTAATAC        TTTTTGCCGCC TGAAAGC GGCGGCAAAAC        TTGCATCGCTGTGCC  69 29
SH03_RS09770 1974675 .. 1974715 +  -4.1  -2.60615   AGCGCTCTGTCATAA  TGAGAGTTACCCGAT ACCTTATTATC AACAGGTAACTCTCA  ATCTTTAAAAAACGT  45 117
SH03_RS09780 NONE
SH03_RS09785 1977974 .. 1977984 +  -2.4  -3.28712   AGGCGACAAACACTT                 GCGG CAC CCAC                 TTATCCAGCGGCAGC  45 238
SH03_RS09800 1980987 .. 1981002 + -10.4  -5.80727   CGTTTAAAGAGCAAA              CCCCTC AAAC GAGGGG               TTTTTTGTTGTTTTT 100 48
SH03_RS09810 NONE
SH03_RS09815 1985363 .. 1985389 + -10.3  -3.53224   AGCCATTGCCCATGA         TAGTGTCCATT AAAAG GATGGACACTA         TTTCCCCGGAACCTG  80 132
        emtA 1989106 .. 1989120 +  -5.6  -4.58283   CGATGTAAATCAGTC               GCGCAC TTT GTCCGC               TTTTTCCCGGGCTTC  75 33
SH03_RS09840 1990302 .. 1990331 + -12.9  -3.59979   TAAGATTTTCATAAG       GCGGATAGCGATA CAGA TGCCGCTATCCGC        TTTCACATCAGAACG 100 38
SH03_RS09845 1990925 .. 1990982 + -10.6  -2.74563   AAAACCATAGCTATG GTGTTATCTGCCGACAACGCCATCCGG AGAAG CCGAATGACGTTGTCGG-AGTAAGCGC TGGTTAAGGTGTGGG  75 43
SH03_RS09870 1998318 .. 1998329 +  -4.4  -3.54146   CGATTTCTGATACAT                CAGA GTGA TCTG                 TATTTCATTCCGGCG  52 51
SH03_RS09880 2001950 .. 2001967 + -11.3   -4.6709   CGGTGAAATGAAAAA             TCCACGC AATT GCGTGGA              TTTTATATACTTTTG 100 192
SH03_RS09895 2004393 .. 2004422 + -11.5  -2.87963   AAATAATGCAGTTTG       CTGACCAGTCAGT TTGC GCTGACTGGTCAA        TCTCGTACTTATAAA  81 42
        hemA NONE
        prfA NONE
SH03_RS09930 NONE
SH03_RS09935 NONE
SH03_RS09940 2013412 .. 2013428 +    -3  -2.61216   AATAAATAACATCGC              GCATAA ACATA TTGTGC              TGCATTAATTAATCG  42 1
SH03_RS09945 2014648 .. 2014689 + -10.1  -4.78848   CTGGTTCAAGATTAG CCCCCGTTCTGTTGTCAGGT TGT ACCTCTCAAC-GTGCGGGGG TTTTCTCTTTCCAGC 100 347
        chaB 2017130 .. 2017142 +  -3.4  -3.15346   ATCGTAAAACCGGTC                GCTT AGTTA AAGC                TATTCGTGCGGTGTT  46 34
SH03_RS09970 2018432 .. 2018449 +  -4.1  -4.66264   ACTGCTTCTGCAGCG             TCTGACC AATC GGTCACA              TTTTTAAGGATTTTC  68 483
SH03_RS09980 2020023 .. 2020037 +  -2.8  -4.40894   CATTTTCTTCAGCAT               GTGC TTGACGT GCAC               TTTTACTGTGCTTTC  62 98
SH03_RS09995 2022655 .. 2022670 +  -4.8  -3.29324   AAAGTTATCTTATCG              TTTGAT TTAC ATCAAA               TTGCCTTTAGCTACA  53 46
SH03_RS10000 2024267 .. 2024285 + -12.4  -5.64274   ATTTGATTATCCTTT             GCGCGGCA TGA TGTCGCGC             TTTTTTTATGCGTCA 100 172
        narZ NONE
        narH NONE
SH03_RS10015 NONE
        narI 2031320 .. 2031335 +  -8.2  -5.60993   TTTAGTTCACATAGA              CCCTGC TTCG GCGGGG               TTTTTTTATGGGCAC 100 47
SH03_RS10025 2032184 .. 2032200 + -12.3  -3.57797   CCTCACCCTTCGGGC              CGTTGCC TGT GGCAACG              TTCTCTCGCTTTCGC 100 453
SH03_RS10050 2034901 .. 2034916 +  -7.6   -2.7264   GGACGAACTTTTGCC              GTTGGT ACGC ACCAAC               ATTTGACCAGAATTT  60 4
SH03_RS10055 2036144 .. 2036164 +    -4  -2.79796   CCTCCTTTTCAGAAC           TTAGC-CCC TTCG GGGTGCTGA            TATACTGGGATGCGA  46 142
SH03_RS10060 2037164 .. 2037185 + -12.3  -5.66684   GTGTTATCCACGAAA           CGGCGTTGA GCAA TCGACGCCG            TTTTTTTATAGCTTA 100 52
SH03_RS10070 2039255 .. 2039281 +  -9.3  -4.77165   TTTTGATATCTTAAC         CGACCTCGGCC TTGAT GGTCGGGGGCG         TTTTGTTATGAACAC 100 364
SH03_RS10090 2044034 .. 2044051 +  -8.4  -3.98113   TCCTTTCAAATGAAA             CGGAGC TGCCAT GCTCCG              TTTACTTCGTCATTA  77 42
SH03_RS10095 2046394 .. 2046422 + -15.3  -3.16187   AGCACTAATGGCAAT        ACGTGGGGCAGGA GTG TCCTGCTCCACGG        TGTCTGATTTTTATC 100 33
        oppB NONE
SH03_RS10105 NONE
        oppD NONE
SH03_RS10115 2050351 .. 2050370 + -13.6  -4.59773   CTTTAAAAACAATAA            GGGCTGAC AGTT GTCAGCCC             TTTTTCACGCTAAAA 100 35
SH03_RS10130 2052532 .. 2052570 +  -9.7  -2.50438   GCGATCTACAATATC   TAAATGTACTGGGCACC ATTGC GGTGCCCAATAAGTTTA   CTCTTCCGTCTTTAA  70 23
SH03_RS10145 2055387 .. 2055420 + -16.9  -3.14564   AATTCAGTAAGCAGA     AAGTCAAAAGCCTCC GACC GGAGGCTTTTGACTA      TTACTCAACAGGTAA 100 31
SH03_RS10165 2058629 .. 2058645 +  -2.2  -5.00138   GATCAAGAATAGTTT              CCAGTT GAACA ATCTGG              TTTTTGGTTTCACTA  71 423
SH03_RS10210 NONE
SH03_RS10215 NONE
SH03_RS10220 2070344 .. 2070370 +   -11  -3.01712   CAGACTTTACTATCA         GTGAGTCAGA TGTAAGT TCTGACTCAC         TGTTGCACAAAAGCA  79 155
SH03_RS10225 2071309 .. 2071329 +  -8.3  -4.62872   CGGTTAATCAAAGTA            TGCCGGA CGTCATA TCCGGCA            TTTTTACAGATTAAT  91 34
SH03_RS10245 2073963 .. 2073982 + -10.7  -4.58773   GATGTAAAAGACAAA            CGCGAGG CTAAGA CCTCGCG             TTTTGCTTTAATCAA 100 34
SH03_RS10255 2074477 .. 2074488 +  -4.4  -3.14848   CCAAGACCTGTTAAC                TCAG TCAC CTGA                 ATTTTCGTGAACAGA  49 4
SH03_RS10260 2077250 .. 2077267 + -10.5  -5.49234   GTTTTTATAAACAAA             GGGTCGC GAAA GCGGCCC              TTTTTTATTGCATAT 100 57
        cysB 2078416 .. 2078449 +  -9.7  -3.35613   AATTTCTTGCGTTAT     TTTCGGCACCTTT TATGTAGC GAAGGTGCCGGAA      TATATTCTCTTTTGT  76 39
SH03_RS10270 NONE
SH03_RS10275 2079248 .. 2079263 + -11.8  -3.66643   CTCACTGATCCTTGA              CCCCGC TGCG GCGGGG               TTGTCATTTGCTTTG  93 242
SH03_RS10285 2082086 .. 2082120 + -11.6  -2.52896   TTGAAGTAACAACTA     TTTGCTTGCCGG TTATTTTGCTT CCGGCAAGCAAA     TGAATTACACAATGC  79 32
SH03_RS10295 2083722 .. 2083747 +  -4.1  -2.90813   CAATGCGTGTGGATG         CCATTT-CGC AGACGGC GCGAAAATGG         TACTTTAAAGGGCTA  47 80
SH03_RS10300 2084115 .. 2084129 +  -2.1  -2.81738   GCACTCGTCAGCGGC               GAAGG AATAA CTTTC               TATGCTGGAGTTGTT  41 16
SH03_RS10305 2085283 .. 2085295 +  -2.6  -3.18031   ATTAAACCGATTCGC                GGTC TTGAT GGCC                TGTAATTTTTAAAAA  44 8
SH03_RS10310 NONE
SH03_RS10315 2086566 .. 2086585 + -13.6  -3.71687   CGGTTAACATAAAAA            GCCACGGA TATA TCCGTGGC             TTTCGAATATTTTAC 100 34
SH03_RS10340 2090803 .. 2090814 +  -3.6  -4.32857   CGCTGCGAAACGGGT                GTCG GTCC CGGC                 TTTGTCTTTCAGGAA  65 355
        puuD NONE
SH03_RS10415 2106143 .. 2106156 +  -5.3  -2.70932   GCGAATCCCGATGAG               CTTAC TCAG GTAAG                TGATTCGGGGGAGCG  49 127
SH03_RS10420 NONE
SH03_RS10425 NONE
SH03_RS10430 2110607 .. 2110621 +  -8.6  -4.77438   CCCTTGTTGCAAACT               GAGTTG CAG CAACTC               TTTTTCCTGCTGCAT  93 244
SH03_RS10440 NONE
        pspB NONE
SH03_RS10450 2112942 .. 2112962 +  -3.4  -2.62463   CACGTTACGTAGCCG           TTTCCGTCA ACTG TGA-GGAAA            GTTATGAATACTCGC  42 10
SH03_RS10455 NONE
SH03_RS10460 2113593 .. 2113608 + -11.8  -6.30182   AGAATTCACCATGAG              CGGCGC TTAT GCGCCG               TTTTTTTTTCTGTCA 100 42
SH03_RS10465 NONE
SH03_RS10470 NONE
SH03_RS10475 NONE
SH03_RS10480 2118516 .. 2118528 +  -2.7  -3.10597   GCTAAAGCGGCCAGT                TTCTT TAC AAGGA                GTTTTAAATGAAAAA  44 36
SH03_RS10485 NONE
SH03_RS10490 NONE
SH03_RS10495 NONE
SH03_RS10500 NONE
SH03_RS10505 NONE
SH03_RS10510 NONE
SH03_RS10515 2126572 .. 2126583 +  -2.2  -4.09739   GGCAACGGTAATATT                CTGT GGTG ACGG                 TTTTCCAGAAATTAA  56 172
SH03_RS10525 NONE
SH03_RS10530 2130151 .. 2130170 +    -5  -3.34517   CGAAAAATAATGCAA            TATCGGGT GCTG ACCGGATA             TCTTTACGCCGAAGT  53 31
SH03_RS10535 2131837 .. 2131877 + -12.7  -3.61609   GAACGAAGAGTAAGC  GCGAATATGCCTGATGGTG CAA CACCATCAGGCATATTAAA  TTATGCTTTCAGTAC 100 28
SH03_RS10545 2133743 .. 2133777 +  -8.4  -2.94365   AATGCGGTGTATAAG     CTGGCACAGCGCCTGG GTT TCAGGTTCGGAGCCAG     GTTTGTCACCTGTCA  61 300
SH03_RS10565 2136453 .. 2136466 +  -6.7  -2.80195   GGCTGAAGTATAAAG               GTGCT GTTT AGCAC                TACTTGCTGATACAT  57 15
SH03_RS10570 2136657 .. 2136667 +  -2.6  -3.05561   TTTTGGAGACTATTA                 TTTA CAC TAAA                 TCTGATTTGATATAT  43 5
SH03_RS10575 2138425 .. 2138452 +  -8.4  -2.74525   TTGATGTGATGGGAA        CTGGCGTTACCC TTGT GCATAACGCCAG         TGATGTCTGATTTAG  64 37
SH03_RS10585 2140820 .. 2140831 +    -3  -3.35996   ACCTTCCCTAACTAA                TCAA TGCG TTGA                 TTGTAAATCCAGCTA  47 180
SH03_RS10590 2141206 .. 2141223 + -12.7  -3.47751   AGTAAGTAAAAAATA             GGCCCGA TAAC TCGGGCC              TTGTCAGTTATTGAA 100 36
SH03_RS10630 2149499 .. 2149511 +  -9.1  -2.88069   GGTAATACGTTGTTG                GACCG ACC CGGTC                TGGTTATCATATCGC  67 302
SH03_RS10640 2150600 .. 2150639 +  -3.4  -4.75372   GTAATCCGGTCATCG  CGTCATGGTGAGCAGCATG TTC CA-GCTGCTCCTCCAGCCG  TTTTTGCTCAGTAAT  71 510
        zntB 2152796 .. 2152815 +   -10  -5.85178   ATTGATTCGTACGAC            GCCGACTT TGAT GAGTCGGC             TTTTTTTTGCCTGTT 100 215
SH03_RS10655 NONE
SH03_RS10660 2154515 .. 2154529 +  -7.1  -3.30243   GGGATTGCCGGATGC               GACGC TGGCC GCGTC               TTATCCGGCCTCCAT  64 83
SH03_RS10715 2163225 .. 2163243 +  -7.4  -4.11394   TGCCTAATTGATTGT             CAATAGGC TAT GCCTAATG             TTTTGAGCGTAACCT  73 518
SH03_RS10725 NONE
SH03_RS10730 2164656 .. 2164667 +  -2.2  -2.88366   GGCGGCGGTTCTTCC                GACG ATTC TGTC                 ATTGTTCATTAAGCA  41 2
SH03_RS10735 NONE
SH03_RS10740 NONE
SH03_RS10745 NONE
SH03_RS10750 2167238 .. 2167249 +    -3  -4.00042   TAACTACAATATGAT                TCAT TTTG ATGA                 TTGTTTCATAAGGAA  56 46
SH03_RS10755 2168895 .. 2168925 +  -8.3  -4.71426   TTACCAGCAACACCT      C-CGTCCCAGTAGC ACTG GCTGCTGGGGTGCG       TTTTATTCATAAAGC  91 108
SH03_RS10760 NONE
SH03_RS10765 2169547 .. 2169566 +  -4.2  -3.33261   GATACGATAAAAAAG            CCATAGCT GCCC AGCGGTGG             TTATCGGAGTTCGGG  51 20
SH03_RS10770 2169984 .. 2169999 +  -6.8  -5.55769   TTATGTCGCCTGAAA              CCCACT TCGC GGTGGG               TTTTTTGTTGTCAGG  91 149
SH03_RS10775 NONE
SH03_RS10780 2171268 .. 2171283 +  -3.2  -5.03747   GCAAACACATCGAAT              CAGCCT ATTT AGGCTA               TTTTTTCCACCATTT  71 117
SH03_RS10790 2172584 .. 2172603 + -12.1  -5.26316   CACAGTGTTATGACA            GCCCGCC GGTTCA GGCGGGC             TTTTTTGTGGGGTGA 100 53
SH03_RS10805 NONE
SH03_RS10810 2176636 .. 2176648 +  -3.4  -4.78477   GGAAGACGTAAAGCA                TCTC ACACC GAGA                TTATTTTTTATATGT  68 103
SH03_RS10840 2185121 .. 2185166 +  -3.3  -4.88736   AAAGCGGTTACACAT GCTGCCGGAAATCATCATT TTTTCACC AAAGCTGATTTCTGGCGGA TTTTTATCGCTGGTC  74 250
SH03_RS10855 NONE
SH03_RS10860 NONE
SH03_RS10865 2189919 .. 2189945 + -15.3  -3.34192   ATCTGTTTTAACTAA         TTGGCGTTGCA GTACA TGCAACGCCAA         TTAGTTAGCGGAATT 100 166
SH03_RS10875 2192615 .. 2192629 + -11.4  -5.71712   CTCATAAGTAAAAAA               CGGCAC CTG GTGCCG               TTTTTTTGTCTGAAA 100 50
        paaA NONE
        paaB NONE
SH03_RS10900 NONE
SH03_RS10905 NONE
SH03_RS10910 NONE
SH03_RS10915 NONE
SH03_RS10920 NONE
SH03_RS10925 NONE
SH03_RS10930 NONE
SH03_RS10935 NONE
SH03_RS10940 2207008 .. 2207064 +  -5.3  -2.89534   AATATTGTTGGTGCC TGACGTATCG---TCTGGCCCTGGTG GGGTAAAG CGCCAGGGCCAGAAGTCGATACGACC TGTGCTATGATTCAT  50 23
SH03_RS10945 NONE
SH03_RS10950 2208665 .. 2208695 +  -9.3  -4.49906   TTGTCCCTTTAATTA      TAAAGCAGAG-TTA TGTT TAAGCTCTGCTTTA       TTTATTTGAGTATTA  95 57
SH03_RS10955 2211583 .. 2211595 +  -4.1  -3.44051   ACCCAGCGCACTATG                CGGAT GCC ATTCG                TTATAATGCTCGAAC  52 119
SH03_RS10970 NONE
SH03_RS10975 2217608 .. 2217631 + -11.8   -5.7946   CATGTGATCCCTAAA          CCGCAACGCTG ATA CAG-GTTGCGG          TTTTTTTATTGCCGG 100 48
SH03_RS10980 2218667 .. 2218684 +  -5.6  -6.28401   AACGAATATACAAAA             GGGAAA GATGCA TTTCCC              TTTTTTTCTTTTTTA 100 39
SH03_RS10985 NONE
SH03_RS10990 NONE
SH03_RS10995 NONE
SH03_RS11000 NONE
SH03_RS11005 2225842 .. 2225856 +  -3.4  -4.18494   TTATGCAGAAACAAT               GCTGTC GAT GGCTGC               TTTTGCGTCAGACTG  58 94
SH03_RS11015 2230526 .. 2230543 +  -3.4  -3.68351   GGCGATGGAGCAGAT             TAGCGG TTAACC CTGCTA              TTTGCCTGATAAAGA  51 16
SH03_RS11020 NONE
SH03_RS11025 2233379 .. 2233391 +  -6.9  -3.00017   TTCACCAGTTGTAAA                TCGCC CAC GGCGG                TAATTTCCGTTTGCG  56 161
SH03_RS11045 NONE
SH03_RS11050 2235707 .. 2235738 + -11.6  -3.52009   CTAGGTTCATTCGTT      GGCCTCGGTTGATA GAAA TATCGGTCGGGGCC       TTCGTCTTTCTGATT  89 310
SH03_RS11060 2237840 .. 2237869 +  -5.6  -4.07568   TCCCGGAACAGGCAG       GGCCACCAGCGT GGCATG ACGCAGGTCGTC        TTTTACAGCGCCAGA  65 183
SH03_RS11070 2240306 .. 2240318 +  -2.7  -3.74762   TGCATATTCTCTCAG                TTCAA CAA TTGGA                TTATTAATAAATATT  52 128
        mdoD 2242096 .. 2242119 + -14.6  -2.90075   TAATCGTTTTTTCTT          CGGCACCTTC TTCG GGAGGTGCCG           TCTGGTTAAACACGA 100 38
SH03_RS11085 2242458 .. 2242474 + -10.8  -5.02074   TGTAAACTTTCCTAA              GCCGCC AGCCA GGCGGC              TTTTTTAACAACTGC 100 36
SH03_RS11090 2243460 .. 2243472 +  -3.3  -3.05596   TGGCAAAATCAAAAA                CTTCG GCG CGATG                TTCAATAAAAGCATA  43 436
SH03_RS11100 NONE
SH03_RS11105 NONE
SH03_RS11110 2246706 .. 2246725 + -13.6  -4.85599   AAAGTAGTTCCAGAC            GCGCCATC GTTA GATGGCGC             TTTTTATCCGGTGCG 100 34
SH03_RS11115 2247183 .. 2247193 +  -4.6  -5.04249   ACAATGCCTTCCACG                 CCGG ATA TCGG                 TTTCTTTTTTCACAG  81 275
SH03_RS11125 2248805 .. 2248822 +  -4.8  -2.73124   CAACGTTGATCTTTA             TCCGGA TGCGCT TCCGGG              CTTTGGCAAATAGCC  46 393
SH03_RS11135 2250309 .. 2250329 +  -6.1  -4.63527   TTCGCAACGTCGCGC            TTGTGGCTA AAA TAGCCGCCA            TTTTTCAGCTACTGG  77 54
SH03_RS11140 2252808 .. 2252825 +  -7.1  -4.30177   AAATTACACACGGAG             GTAAACA CTAA TGTTTAC              TTTGTTGATATACTC  75 519
SH03_RS11150 2253020 .. 2253030 +  -3.2  -3.15579   GCAATCCTGAAACAA                 CTCG GTT TGAG                 TTAATCGCCAATTAA  46 11
SH03_RS11155 2253513 .. 2253530 +  -2.7  -2.63596   TACAGTTAACGAAAA             GTTGTCA TTTT TAACAAC              TGATATAGACTGCCG  41 42
SH03_RS11160 2254975 .. 2254985 +  -3.2  -3.08036   ACTTATTCAAGAACG                 GCTG TAA TAGC                 GTTTAATTTAATTCC  46 19
SH03_RS11165 NONE
SH03_RS11170 NONE
SH03_RS11175 2258323 .. 2258353 +  -2.6   -3.4331   GTTCGTGAAACGTCT      GG-GAGCGTTC-GA TGCAC TCTGAACGCGCACC      GTTTTTCCTCAAACT  48 4
SH03_RS11180 NONE
SH03_RS11185 2260591 .. 2260615 +  -4.3  -2.62263   GATAATATTGCAGAT          CGTAAGAGTAT GAG ATGATCTTGCG          TACTGTCAGAGCACT  45 42
SH03_RS11190 2260903 .. 2260919 +  -2.2  -2.60992   GAAAAAACTTGATGC              ACGTCA AAAAA TGACGC              ATATTTGCGCGCGTT  40 126
SH03_RS11195 NONE
SH03_RS11200 2261820 .. 2261838 +  -3.1  -2.52623   GGTAGAGGAGGTCTG             GGTGATG CGCAC CATCAGC             GTGTTCTGGACAACC  40 392
SH03_RS11215 2263611 .. 2263629 +  -5.2   -2.7728   ACTTCGGCAAAGTGG             TGATCCGC GTG GCGGGTGA             TGATTAAAGTTTCAA  50 0
SH03_RS11220 2264739 .. 2264752 +  -5.9  -3.76811   GACGAGAGTATAAGA               CGGCG CTTT TGCCG                TATTTTCATCATCTG  63 265
SH03_RS11230 2268022 .. 2268044 + -14.9  -4.19953   GTCAGTAATCTGAAT           TTGCCCGGC ACGTA GCCGGGCAA           TTTTGCAATTAACTC 100 107
SH03_RS11240 NONE
SH03_RS11245 2271211 .. 2271229 +  -5.4  -4.35992   CAAACCATCATTCAT             TTCAATGA TTG TTATTGAA             TTATTTATTGTTGTG  68 512
SH03_RS11250 NONE
SH03_RS11255 2274055 .. 2274084 + -11.7  -3.62354   GGCAGGGCAAGATCA       TGAAAATTGTGAT GTAA ATCACGATTTTCA        TCTTTGCTTTAACGC  90 104
SH03_RS11260 NONE
SH03_RS11265 2276528 .. 2276538 +  -6.8  -3.87104   GGGCTTTCGTAATCT                 TGCC CTG GGCA                 TTATTGTCGTATAAA  67 29
SH03_RS11270 NONE
SH03_RS11280 2278454 .. 2278485 + -16.6  -2.52795   TAATTTATGTCAGGT      TGCCGGATGCGGCG TAAA CGCCTTATCCGGCA       TACATTAGCCCGGTT 100 38
SH03_RS11330 NONE
SH03_RS11335 NONE
SH03_RS11340 NONE
SH03_RS11345 2295583 .. 2295614 + -13.9  -3.21395   TTTTGAACTTTAAGC      TGAAAATGGCGCT GTAAAA GGCGCCATTTTCA       TATTGTAGACAACGT 100 45
SH03_RS11375 2300643 .. 2300670 + -11.3  -3.67558   AGCATTGCCGGATGA        CGCGTCAGGCG CGTGAA TGCCTGATGCG         TTGTTAGCATCTCTA  90 41
SH03_RS11535 NONE
SH03_RS11540 2347612 .. 2347622 +  -6.8  -3.09803   TAAAAAACGGGAGGC                 CGCA TAA TGCG                 TATTCGCTACGGTTG  59 19
SH03_RS11545 2348603 .. 2348627 +  -2.1  -2.54732   GGGCCAATAACCCAT          TGCCATAAAGG ATA TCTTCATGACA          CTTCATCGCTTTAAG  39 18
SH03_RS11550 NONE
SH03_RS11555 NONE
SH03_RS11560 NONE
SH03_RS11565 2352153 .. 2352166 +  -5.3  -3.07043   CGAAGCCAGTACACG               CTGAA GATC TTCAG                TCTTGAGATAATGAG  53 503
SH03_RS11575 2353094 .. 2353106 +  -3.3  -3.80893   GAAAGTAAGGCGCGC                CGGAA GTG TGCCG                TTTGCCTTCTGCCCT  53 376
SH03_RS11605 2359258 .. 2359270 +  -2.7  -3.68936   AGGGATATCAATGAG                CTATT TTT GATAG                TTCTTGCGGTTAATA  50 27
SH03_RS11610 NONE
SH03_RS11615 2361796 .. 2361809 +  -9.5   -5.1861   ACGCAATAGTTGAAA               GGCCC ATTC GGGCC                TTTTTTAATGGTACG 100 32
SH03_RS11625 NONE
SH03_RS11630 NONE
SH03_RS11635 2363788 .. 2363805 + -12.7  -3.73068   ATGTAGTTTGTTCTG             GCCCCGA CATC TCGGGGC              TTATTAACTTCCCAC 100 35
SH03_RS11645 2366066 .. 2366082 +  -5.7  -4.40298   GATTCGAGCAAGACC              GTGGGGG CAG CCCGCGC              TTTGTTGATTTAAGT  70 1
SH03_RS11650 2366337 .. 2366373 + -10.2  -4.82901   ATAATCCCTCACCTA   ACCGGCCCCTTGTTACA GTTG TGTA-CAAGGGGCCTGA    TTTTTATGACGGCGA 100 50
SH03_RS11665 2368866 .. 2368894 + -13.9  -2.58292   TTACTGCTATAACCA        GGCTGGCCTGG CGATATC TCAGGCCAGCC        ATTGGTGGTGTTTAT  95 29
SH03_RS11675 2371843 .. 2371860 + -10.5   -3.8591   TCAGTAATTTTTATA             CCCGGCG TAAC TGCCGGG              TTATTGCTTGTCACA  86 34
SH03_RS11680 2372618 .. 2372641 + -13.2  -3.63922   AGAGTAATTCATTTC          CTCTCATCCC ATCC GGGGTGAGAG           TCTTTTCCCCCGCCT 100 34
SH03_RS11685 2372996 .. 2373019 + -11.8  -5.26875   ATGAACTAAGCGTGT          G-AATGCCGCC GAT GGCGGCATTGC          TTTTTTACTTCACGG 100 32
SH03_RS11700 2377036 .. 2377046 +  -2.6  -2.77118   CCGAGTTAAAGCCAT                 TTTT CAC AAAA                 TCGATTTTGGGTCTC  42 185
SH03_RS11705 2378039 .. 2378055 +  -6.5  -5.80003   CAATATGCTCACTGG              CTACCTG CAT CAGGTTG              TTTTTTGTTTCTTCC 100 281
SH03_RS11725 NONE
SH03_RS11730 2381135 .. 2381150 +  -4.6  -3.93984   TCAAATATAACAAAA              CCCCGT AAAA ACGAGG               TTTATGGATAAATTT  61 132
SH03_RS11775 2385927 .. 2385958 + -10.2  -5.08601   ATTGCCCCATTTAAA      GCACAAAACCCGCT CATC AGCGGGTTTTCTAC       TTTTTCTTAACGTCG 100 314
SH03_RS11815 2390323 .. 2390341 + -11.7  -4.11216   AGTGACAGCCGTATT             GTGGCCC TCATC GGGCCAC             TTTTCGCCATCAGCC 100 40
SH03_RS11830 2391908 .. 2391930 +  -4.3  -4.09864   AGCGGACAAATAAAA          GATAACATCA TCAA TGA-GTTATC           TTTTACCACATCAAT  61 21
SH03_RS11835 2392306 .. 2392322 +  -2.1  -3.53343   CCGAAGGCGAAGAAG              CTCTCAG CTT CAGTGAG              TTTAAACAGGCGCTT  47 97
SH03_RS11840 2392876 .. 2392893 +  -6.9  -3.36492   CGGGGTTATTCCTTC             CCCGTTG AGGA CACCGGG              TTGTCAGGTTGACCA  59 289
SH03_RS11850 NONE
SH03_RS11855 2393909 .. 2393920 +  -2.2   -4.4017   AAACCGCTGGGATGA                GGAG TCTG CTTC                 TTTTGTCCCGGTTGA  60 378
SH03_RS11865 NONE
SH03_RS11870 2396579 .. 2396591 +  -3.4  -2.94032   GTAATTAATTTTTCT                GGTT TAATT AACC                CTTTACTTAACCAGT  42 325
SH03_RS11890 NONE
SH03_RS11895 2400353 .. 2400368 +  -4.6  -4.36411   TTTTGATGGTGTAAA              CCCGTT CGAC GGCGGG               TTTTACTCCTTCATC  67 63
SH03_RS11905 2401458 .. 2401480 +   -12  -2.74144   ACATTATCGACTGAA           CGCCGGATAT GAC AAATCCGGCG           ATTTGAACATACAAC  83 42
SH03_RS11910 NONE
SH03_RS11915 NONE
SH03_RS11920 NONE
SH03_RS11925 2408042 .. 2408059 + -12.7  -2.76315   CAGGTTAACAAATTG             GTGCGGG GCAA CCCGCAC              ATTTCAGGATGTTAG  89 33
SH03_RS11930 2408668 .. 2408680 +  -9.1  -3.41073   CTGTTAATTCCTGTC                GCGGT TAA ACCGC                TGTTTCGATAGGATC  73 2
SH03_RS11935 2410533 .. 2410546 +  -3.1   -4.4846   ATTGATTGGGCAACT               GT-GCG CCA CGCTAC               TTTCTTCTTCGCTTA  65 416
SH03_RS11955 2414531 .. 2414560 +  -9.4  -3.62597   ACGCCTGAAAAATAA      GTCCGGACTGCGGT AAAT ACC-C-GTCCGGAC       TTATTGCCAGCTCAA  78 33
SH03_RS11960 2415300 .. 2415330 + -11.9  -2.71924   TCGCGCCTGAAAATT       ACGGTGCTAAGCG GGTAA CGTTTAGCACCGC       CTTTAGCGGAGGGTA  83 70
SH03_RS11965 NONE
SH03_RS11970 2416361 .. 2416384 + -15.3  -3.13403   AAAATAATGTTCAAA          CGCTGCCCG ACAGCG CGGGCAGCG           TCTTCATCAGGCAAG 100 34
        tqsA 2418647 .. 2418659 +  -4.1  -3.53811   CACCAGCATAGCCAG                TGTTC ATC GAACG                TTTAAAGACAATCAC  51 154
SH03_RS12000 2422963 .. 2422979 + -10.8  -3.81062   CAGTTACTCCTATAA              GGCGGC TTGAT GCCGCC              TTTCGCATTTTTAGT  88 46
SH03_RS12005 2424500 .. 2424524 +  -5.7  -3.05384   CGGCGACCTGGATGC          TGGTGGGATAA CGT TCATCCCATCG          TTGGATAGCAAAGGA  54 15
SH03_RS12010 2425261 .. 2425274 +  -4.5  -2.92102   GATGGCGGTCGTCAT               CTGCG TTAA TGCAG                CTTTATCCAGCATAT  50 17
SH03_RS12020 NONE
SH03_RS12025 2427810 .. 2427824 +  -3.6  -2.53119   AAAATAAGTATGTTG               TAACTA AAG TGGTTA               ATATTATGGCGCGTT  44 81
SH03_RS12030 2429203 .. 2429218 +  -5.4  -4.11484   TTTCCCCGGCATGAT              TGAGCT GCCC GGCTCA               TTTTCCGGGATTGAG  65 469
SH03_RS12045 2433380 .. 2433400 + -12.6  -4.27483   AGGCTTATAACACCT            TCAGGCGG CCAGT CCGCCTGA            TTTCATTTTATGGAT 100 83
SH03_RS12050 2434945 .. 2434968 +   -11  -4.34402   AATTCACGGCCAAAA          CGCCGGAG AATTTTCA CTCCGGCG           TTTTCATCTGAAAAC 100 39
SH03_RS12085 NONE
SH03_RS12090 2445700 .. 2445741 +  -8.7    -4.652   CCGCGCTGTTCGTTA ACCCCAATTGCGCAACG TAAAAAAT CGTTGCGCAATCGTGGA  TTTTTACCCTGCTTT 100 25
SH03_RS12095 2446811 .. 2446834 + -15.4  -4.72272   CGCGAAGTAACAAAA          TGGATGGTGC AAAT GCACCATCCA           TTTTTCATGCAAGGC 100 31
SH03_RS12105 2448268 .. 2448290 +  -6.3   -4.3208   GCACTTGTGGAGCGA          CATGCTGCCC GTCC GGGT-GCATG           TTTTCACTTGTCGGA  72 46
SH03_RS12110 NONE
SH03_RS12115 NONE
SH03_RS12120 NONE
SH03_RS12125 NONE
SH03_RS12130 NONE
        rnfD NONE
SH03_RS12140 NONE
SH03_RS12145 NONE
SH03_RS12150 2455736 .. 2455755 +  -7.9  -2.52234   GACATCTGAAGAAAA            GGGGTAA CACCGA TTACCCC             ATTGATAACCTTTCT  60 32
SH03_RS12155 2456122 .. 2456132 +  -2.6  -3.57792   AATCTGCCGTTACGT                 TTTT TGA AAAA                 TTTAACGCTGGATAA  50 90
        tppB 2457866 .. 2457888 + -13.5  -6.36459   GAAACTCTTTTACAA           GCCGCTAAC TTTTC GTTAGCGGC           TTTTTTTTTGTTCAG 100 49
SH03_RS12165 2458561 .. 2458574 +  -5.9  -3.28924   TAAAGTAATAGCCAT               CGGCC CACA GGTCG                TTGTGGGCCGAAATG  57 33
SH03_RS12195 2463919 .. 2463954 + -11.8   -3.5332   CTCCGCGCTAAATAA    GTTTGCGTGTGGTCAG GTTA CTGACCACACGCCCCC     TTCATTTCACCCTTT  91 30
SH03_RS12205 NONE
SH03_RS12210 NONE
SH03_RS12215 2467953 .. 2467980 + -11.2  -3.69902   TTTGTGGATCAAGAT        GCCCGC-CTGCGG ATT CCGCGGCGCTGGC        TTTGCCATCTTTGGT  81 274
SH03_RS12235 2470180 .. 2470199 +  -4.9  -5.24129   AAAACATTATTGCGA            CGCCTGC CGTTTA GCAGGCA             TTTTTTATCACCAGA  80 12
SH03_RS12240 2471341 .. 2471358 +  -9.8  -2.78384   AATCCAACATTGCGA             GCGGCG TAAAGC CGCCGC              TATACTAAAACAACA  72 39
SH03_RS12245 2471821 .. 2471848 +  -9.9  -3.46647   GGGCAACTAATCTCC        TGCCGGGCGTGA ACTCA TCGCGCCCG-CA        TCTTTACTGCATCGA  78 31
SH03_RS12250 2472573 .. 2472604 +  -7.4  -2.79679   AGGTGTAATCGAGTC      GATGCCTGATGACAT GCA ATGAT-TCAGGCATC      TATAGTGAGGCTATT  59 33
SH03_RS12255 2477283 .. 2477310 + -15.7  -3.01791   GGGATAGAGAAAGGA        CTGACGGATGC CCGTTC GCATCCGTCAG         TATTGCAGGACGGAT 100 34
SH03_RS12265 2478825 .. 2478854 + -12.3  -3.59432   ACACTTCGCTAAAAC       TTTACCCTGTTGT TACG GCAACAGGGTAAG        TTCATCTTTTGTCTC 100 29
SH03_RS12270 2479659 .. 2479680 + -14.5  -5.38326   TGTCAGCAACTGTAA           CGCAGAAGG TTAT CCTTCTGCG            TTTTTGTTTAATTAG 100 154
SH03_RS12285 2482442 .. 2482456 +    -7  -3.07895   ACTATCGTCGTTAAT               CACCCG TTG CGGGAG               TCTCTTCCGGCTCCC  59 27
SH03_RS12295 2484893 .. 2484912 +  -7.1  -2.91276   ACGTCGGATTATAGA            CTCGCGG TTTTTT CTGCGAG             ATTTCTCACAAAGCC  61 225
SH03_RS12300 2486144 .. 2486164 +   -14  -3.60475   CTAAAGGCTATTCTA            TCGCCCCC TCTCC GGGGGCGA            TTTCAGATCAGGCTT 100 37
SH03_RS12310 2488409 .. 2488436 +   -12  -3.90048   CCCGCTAATAAAGAC        AAGGCGCAACCT TCAC GGGTTGCGCCTG         TATTTTTACGCAGGC 100 33
SH03_RS12320 NONE
SH03_RS12325 2490161 .. 2490179 +  -7.5  -3.45037   GTCCACTCGGACGCA             CCAGATT TTCTT AATCTGG             TCTTCTCCTTTTTCC  66 23
SH03_RS12330 2490591 .. 2490605 +  -8.5   -4.3014   ACAGAATTTAATCAA               GGGCG GTTAG CGCCC               TTTTCATCCCTGTCT  82 40
SH03_RS12335 2492557 .. 2492570 +  -8.1  -2.72144   CAATTCTGGCGTTTG               CGCCA AAGC TGGCG                ATTTGCACCAGGTCA  57 276
SH03_RS12375 2500714 .. 2500729 + -11.8  -5.99154   AATTTGTATATCGAA              GCGCCC TGAT GGGCGC               TTTTTTTATTTAATC 100 58
SH03_RS12380 2501250 .. 2501268 + -14.6  -6.02914   CTGTGAAGTGAAAAA             TGGCGCAC ATT GTGCGCCA             TTTTTTTTGTCTGCC 100 47
SH03_RS12435 2513765 .. 2513785 + -16.9  -3.61517   ATAAGTAATTTCTCA            TCAGGCGGC TCT GCCGCCTGA            TTGTTAACCACCGCT 100 33
SH03_RS12440 2514582 .. 2514610 +  -3.1  -3.33922   TTGTTACAACAATAA        TGAACGGATGCTG ACA CAACATCGCTTCA        CTTTTTAAAGCACCT  47 65
SH03_RS12445 NONE
SH03_RS12450 NONE
SH03_RS12455 NONE
SH03_RS12460 NONE
SH03_RS12465 NONE
SH03_RS12470 2521923 .. 2521958 + -14.7  -2.91276   AGAACAAATAATCTG    CAGGCGGCGCAGCTT CTTAAC AAACTGCGCCGCCAG     ATTTATCCAACAAGA 100 30
SH03_RS12485 NONE
        fixB NONE
SH03_RS12495 NONE
SH03_RS12500 2526558 .. 2526578 +   -14  -2.69057   TAATCATGCATCCCA            CAGGCCCG CATCT CGGGCCTG            ATGTTCTGTTTCGAG  95 38
SH03_RS12505 2528272 .. 2528298 + -10.7  -5.02645   TTCGGGGATCACATA         ACCCCGGCGAC TAAAC GCCGCCGGGGA         TTTATTTTATTTCTT 100 49
SH03_RS12520 2531837 .. 2531866 +  -4.3  -4.98468   CATGGGCCTTAGTCG       CCGAATGTACTAG AGAA CTAGTGCATTAGC        TTATTTTTTTGTTAT  74 13
SH03_RS12525 2533058 .. 2533081 + -15.4  -3.86822   CCGCTTCTGAATGCG          TGCCCATTCC TGAC GGAATGGGCA           TTTCTGCGCAACTTG 100 31
SH03_RS12530 2533752 .. 2533787 +  -5.4  -3.64164   TAATCGCTGCGCTCT    CGCGCCATCAGACTGAA TAA TTCATTCAG-TAGCGCG    TTATCCTCTTTTTGC  58 402
SH03_RS12605 NONE
SH03_RS12610 2549133 .. 2549145 +  -9.1  -3.67141   GCCCCGGAGGCATAG                CCCAG CGG CTGGG                TTTCACTGGCATTGT  73 316
SH03_RS12620 NONE
SH03_RS12625 NONE
SH03_RS12630 2552244 .. 2552260 + -10.8  -4.43477   TGGGTTGAGGATAAT              GGCCGC TCCGT GCGGCC              TTTTGATTAAATAAA 100 43
SH03_RS12640 2553622 .. 2553649 + -19.2  -4.15029   CTTCTCGGTTAATGA        CCAGGGGCAGTG ATCT CGCTGCCCCTGG         TTCTTTATCTGAAAT 100 29
SH03_RS12645 2554392 .. 2554408 +  -5.2  -3.70902   CAAAAATCACCTTTC              TGGAAT AAGCA ATTCCA              TTTGAATATAAGAGC  59 46
SH03_RS12650 2555906 .. 2555938 + -12.7  -3.83644   ATTAATTCTTATGCT      GGCAACGGTCCGTTT TGT ATAGGGGCCGTTGCC      TTACTTTTTAAATGT 100 36
        katE 2559699 .. 2559728 + -13.5  -2.95116   AAAATTCCTGCCTGA       TGGGAGGCGGCGC AATT GCGCCGCCTCAAA        TGATTTACATAGTGC 100 26
        nadE 2566893 .. 2566920 +   -12  -2.78371   GCGAAAAAGAGTAAT        TTGTTCACGCCG GATG CGGCGTGAACGC         CTTATTCGACCTATA  73 63
SH03_RS12715 2568415 .. 2568460 + -10.5  -3.53761   CCAGTAAAAATCACG TTTTGCCGGTGGGAACGTGCAA ATT TCGCGCGTTTC-ACCGGCAGCA TTTCGCCACAGATTC  78 468
SH03_RS12755 2576797 .. 2576813 +  -6.5  -2.80816   TCTGGGCGACCTTCC              GCCGCTA ATT TAGCAGC              TCTCCTGGCTCAAAC  55 18
SH03_RS12760 NONE
SH03_RS12765 NONE
SH03_RS12770 NONE
SH03_RS12775 NONE
SH03_RS12780 NONE
SH03_RS12785 NONE
SH03_RS12790 2582962 .. 2582975 +  -2.3  -2.70788   GAAAATTACAACAAA               CTGCG ATAA CGCAA                AGTTTTTCTCAATGC  40 17
SH03_RS12795 2584556 .. 2584568 +  -2.7  -4.26076   GTGCATAACCGGGGT                TATCA ATC TGATG                TTTTGCTGCCAGTGC  60 237
SH03_RS12805 2585590 .. 2585615 +  -7.5  -2.66272   GGCTGCGCTGACTGC         CCGCCTGAACT GAAC ACTTCTGGCGG          TACGTTTACCTCCAC  56 148
SH03_RS12815 2587422 .. 2587437 +  -3.2  -4.30719   GTATTTAACGGATGA              TGCTCC CCAC GGAACA               TTTCTTATGGGCCAA  61 163
SH03_RS12845 NONE
SH03_RS12850 2594273 .. 2594302 +  -9.4  -5.08824   CGTTAAGTCTTGTAC       TGA-GTGGCCGAC AGATC GTCGGCCACATTA       TTTTTTACGTCGACG 100 35
        ansA NONE
SH03_RS12860 NONE
SH03_RS12915 2607363 .. 2607380 + -11.3  -5.82316   ACTGTGATCTAAAAA             GAGCGAC TTCG GTCGCTC              TTTTTTTTACCTGAT 100 52
SH03_RS12920 2608289 .. 2608300 +  -4.4  -3.57507   GGCGCAATCCATTCG                CGTT GCGA AACG                 TTAATTTACGTTAAT  54 10
SH03_RS12935 2612388 .. 2612403 +    -4  -2.73875   ACTGTGCGAATGGTA              TTTGCG CGTA CGTAAA               TCGTCTTAACAACCC  46 1
SH03_RS12940 2613814 .. 2613840 + -11.6  -4.76892   TAAAGGCTAAAACTA         TCAGCCAGGTCA TTA TCGCCTGGCTGA         TTTTTAGCTTACTGT 100 31
SH03_RS12945 2615448 .. 2615466 +  -8.1  -4.20106   GCAAAAATATTCAGA             GCCATGC TTTTT GCGTGGC             TTTTGCATACAATTT  76 43
SH03_RS12950 NONE
SH03_RS12955 2617886 .. 2617897 +    -3  -4.61482   GCAGCAAGCGTAAAG                TAAG CAGG CTTA                 TTATTTTTTGGCAAG  65 264
SH03_RS12965 2618387 .. 2618408 + -11.5   -4.1711   ATCTCGCAATATATC           GGCCTGGCG TTTG CCCCAGGCC            TTTCTTAAACATAGT  93 44
SH03_RS12975 NONE
SH03_RS12980 2620988 .. 2621021 +  -3.8  -3.72984   TCTGCTGGCAATAGA     CCGACGCCGGATTTG CCATA CCAATCT-GCGGCGG     TTTAGGTGCTTCTGG  56 187
SH03_RS12990 2622297 .. 2622314 +  -3.3  -3.09131   TTGTCGCGCATCCAG             CGCTACA TTCC TGAGGCG              TATTCACATCCTTTT  46 12
SH03_RS12995 2622542 .. 2622559 +  -8.4  -3.95219   CTAAAAAATAGCAAA             GGCTGC CTGTGT GCAGCC              TTTGTGCAATTTAAG  77 126
SH03_RS13025 2626589 .. 2626605 + -13.7  -5.87996   ACCAGTTTATTTGAA              CCGCGTC ACT GACGCGG              TTTTTTTATTCGTTC 100 47
SH03_RS13030 NONE
SH03_RS13035 2629380 .. 2629395 +  -4.6   -4.7373   TCGGCGGCGGTATTT              TCCGCC GCTG GGCTGA               TTTTTGATGGAGTAC  71 46
SH03_RS13040 2630381 .. 2630431 + -18.3  -4.26344   GTGTTGGATTTGTAG TTTGCCGAAGCCGGATGTGGCGC TGAGC GCGCCCAGTCCGGCTTCGGAAGA TTTTACTGCGGATAT 100 26
SH03_RS13070 2637675 .. 2637685 +    -4  -3.06515   ATATAGCCTTATCGA                 TAAC ATG GTTA                 ATTTTAAGGATAAGA  47 419
SH03_RS13075 2638032 .. 2638062 + -11.3  -4.84359   AGCATAAATGGGTCA       GGACGCTTTTAAT CACAT ATAAAAAGCGTCC       TTTTTCTCACAATCA 100 55
        pabB NONE
SH03_RS13090 2640464 .. 2640483 +  -6.4  -2.58427   CGCTGTTATTAGTTC            GTTACTGG AAGT CCAGTCAC             CTTGTCAGGAGTATT  54 171
SH03_RS13095 2641876 .. 2641902 +   -13  -3.88583   GACTAATACTTCTTA         CTCGCCCATCTG CAA CGGATGGGCGAA         TTTATACCCGCTTTC 100 35
SH03_RS13100 2643585 .. 2643597 +  -6.3    -2.567   TCACGCCCATTATGC                CGTTA CGT TAACG                CTTACTCATCTTCAT  53 15
SH03_RS13115 NONE
SH03_RS13120 NONE
SH03_RS13125 2648333 .. 2648350 + -14.1  -5.71712   ACTGTTGTACACTAC             CGGGGCC TTTT GGCCCCG              TTTTTTTATCTGGAG 100 42
SH03_RS13130 2648840 .. 2648891 +  -9.8   -3.1577   AATAAGTTATGAATT TAGCCAAAGCTATGTTTAGTGTATT TTT AATA-ATCAGACATAGCTTAGGCTA TATTACCTCTTCCCT  74 36
SH03_RS13135 NONE
SH03_RS13140 2650240 .. 2650261 +  -4.3  -4.43501   CACAAAAAGTGACCT           GCGGATAGCG TTT CGCCG-CCGC           TTTTATCGCTACCTT  67 441
SH03_RS13160 2651529 .. 2651546 +  -9.9  -2.65354   ACCCTAAAGAGAAGT             CAATCCC CAAA GGGATTG              TAAATTTAAAATAAG  71 225
SH03_RS13175 2652838 .. 2652868 +  -6.9  -3.29471   CTCATGCTAAATAAA       GAACCTGTCTG TTTGATATT CCGACAGGTTC       TTACTCTCATCAGAA  61 129
SH03_RS13185 2655225 .. 2655244 + -10.7    -4.946   CAGGGCATAAAAAAA            GCGCGTC GATCAG GACGCGC             TTTTTAGTATTTACT 100 31
SH03_RS13210 NONE
SH03_RS13215 2663721 .. 2663746 + -14.7   -3.9712   CCAAATAATGCCCAC         TGCTCCGGCGT GCCT GCGCCGGAGCG          TTTATGCTAAACTGC 100 33
        yebU 2665235 .. 2665251 +  -2.2  -2.63208   CGGTAACGCCTGACA              GCGC ACAAAAAAA GCGC              ACTTTTTGACTGGCA  40 28
SH03_RS13225 2665598 .. 2665614 +  -7.9  -4.12857   CTGATCCAAAAAGAA              CCCGTCG GCA TGGCGGG              TTATTTGTCCTGGTT  76 37
SH03_RS13230 2666132 .. 2666142 +  -2.4  -3.00298   AGCAATAACATGCTT                 GCCG GTG CGAC                 TGTGTACTTCAAGAA  42 275
SH03_RS13260 NONE
SH03_RS13265 2669674 .. 2669690 +  -2.1  -3.07233   TACGCTAGGCTTTTT              CGGCCTG GAG CATGCCA              TGTTGCGCATTATCG  43 33
SH03_RS13270 2670756 .. 2670777 +  -7.3  -3.45366   GTACCTGGGCGATAA           CGCCGTGGAA TAA TTCCG-GGCG           TTGATTAATTGCAAC  61 429
SH03_RS13285 2673787 .. 2673799 +  -4.7  -4.73613   TTGATCATCTGCCCA                ACGCG CCA CGCGA                TTTTGTTGATAATCA  75 365
SH03_RS13300 2675655 .. 2675675 + -15.5   -4.4267   AAAACGCTACAAAAA            TGCCCGATC CTC GATCGGGCA            TTTTGACTTTTACAG 100 51
SH03_RS13325 2681145 .. 2681157 +  -6.2  -4.08651   ATGAGATTAATTTAT                CGCC ATCGC GGCG                TTATTTCATTCGGAT  69 79
SH03_RS13330 2682769 .. 2682787 + -10.3  -5.68438   TATCATCAGGCGAAG             GCCTCTC CTCGC GAGAGGC             TTTTTTATTTGATGG 100 133
        znuC 2686967 .. 2687006 +  -3.6  -3.33815   CGAATTGTTTTGCGT  CGGGGAAATGATCGCTCA TGAT TGAATTATTATTTCCCGG   TTGGTTAGCCGGGAT  49 5
        znuB 2687777 .. 2687829 +  -8.4  -3.03443   CCAGCTAATCTATCG CTGAACACATTTGTCGGATGCGGCG CGAG CGCCTTATCCGACCTACG-GTTCGG TATCTCTGGTAGTCC  65 33
SH03_RS13370 2690559 .. 2690588 +  -7.1  -5.02074   TAGCGGGCAGTTTCA       GCAAGGTGCGG ACCATATG CTGCACCTGGC        TTTTTTCGGCACTGC  86 161
SH03_RS13395 NONE
SH03_RS13400 2695807 .. 2695817 +  -2.4  -3.04894   CCTATCATAGACAGG                 TGCC ATC GGCC                 ATTTTAAAGGGAGTT  42 49
SH03_RS13405 NONE
SH03_RS13410 NONE
SH03_RS13415 2698120 .. 2698137 + -14.1   -3.0976   GTTTGCATAACCTCA             GCGCCCG TTTC CGGGCGC              TATTCACGTCTTACG 100 162
SH03_RS13440 2705387 .. 2705412 +  -9.8  -5.46657   TTTCGTGAGAGTGAA         GCCTGATCAGG GTTAG CC-GATCAGGC         TTTTTTATTGCCATC 100 47
SH03_RS13445 2706391 .. 2706401 +  -6.8  -3.32844   ACCAGCGTCATCAAT                 CCTG AAG CAGG                 TTGTCGCGTAGAAAG  59 386
SH03_RS13525 2723026 .. 2723044 +  -8.8  -3.06483   TATCGCGCTGCTGGC             TTTCCGCG CTT CGCGGAAC             TATCTGCTTTAGGTC  68 76
SH03_RS13555 2730268 .. 2730295 + -11.3  -5.52986   GAAGGTTTTGAGAAA        CCGCTGCCTCA TCTGTT TGAAGCAGCGG         TTTTTTTAATGGGAT 100 71
SH03_RS13565 2730933 .. 2730945 +  -9.1  -3.64488   GATGGCAAGAAATAG                CGCCT GCC AGGCG                TCTTTTCCGGCCATT  75 148
SH03_RS13570 2731352 .. 2731367 +  -6.8  -2.71364   TAAATATTTTAATCA              GCGAGG GGAT CTTCGC               TGATTAAAGAAATAG  56 38
SH03_RS13575 2732015 .. 2732037 + -16.3  -3.61178   AAAACTAATGCTCTC           CGGCGGCAG GTTTA CTGCCGCCG           TTTCAAATCAGTGAC 100 33
SH03_RS13585 2733709 .. 2733738 +  -7.9  -3.67517   GCCTCAAATTCCTTA       TTGGGTGCCAG AATTAACG CTGACACCCAA        TTTGGCCTCTTAATG  70 48
SH03_RS13625 NONE
SH03_RS13630 2738844 .. 2738870 + -12.3  -4.70659   GTCAGTAATATAAAA         CCGGCTGATAG CGTGC CTTTCAGCCGG         TTTTTGCATCTGGCA 100 33
        fliD NONE
        fliS NONE
SH03_RS13685 NONE
SH03_RS13690 2750440 .. 2750465 + -11.2  -3.90291   AGAGGTGATTTAAAT         TCATCCCCGGC GGCAA GCCGGGGA-GA         TTTCATTACGGCAGT  88 28
SH03_RS13700 NONE
SH03_RS13705 2752512 .. 2752540 + -11.7  -2.83748   TCAGAAGTAATCCCT        CATTCCCGCTGTG ACC CACAGCGGGAACA        TCGTTACCTTTGTAT  81 31
SH03_RS13710 NONE
SH03_RS13715 2753878 .. 2753912 +  -3.5  -4.55295   AATTGCCATGAGCCA     GACGCAGCACATT CTTGCATTC GACGTGCTGCGCC     TTTATTTATCACCAG  65 30
SH03_RS13730 2755620 .. 2755634 +  -4.3  -4.88067   TAACGCCACGCCGGG               TTCAC CGAGA GTGAA               TTTTTCTGCCTGCGT  79 71
        fliF NONE
        fliG NONE
        fliH NONE
        fliI NONE
        fliJ NONE
SH03_RS13765 2762283 .. 2762293 +  -3.2  -2.79831   GCGTGTAACAGGCAA                 CAGC GGC GTTG                 ATATTTTCGCCTAAC  43 1
        fliL NONE
        fliM NONE
        fliN 2764281 .. 2764291 +  -2.4  -3.22298   TCTGAGCGAATGCGC                 CGCC TGA GCCG                 TTAGTGATGAATAAC  43 11
SH03_RS13785 2764646 .. 2764667 +  -4.3  -3.17798   AAAAATTTGCTTAAG           CGTAGCGGG AGAT CCTGATGCG            TCGTTTATTGTCTGT  49 8
        fliP NONE
        fliQ NONE
        fliR 2766448 .. 2766469 +  -2.4   -2.7556   TTTGCTGGCTGATAT           TATTAGTG AATTGC CATTAATA            TAATTCCGTAACGTT  41 1
        rcsA 2767382 .. 2767427 +  -9.7  -2.61126   TTTTGTCAACATGCG CTAACACATTCTGACTGGTGG TTTC CCACCAGTCAGGCTGAATAAG ATTACTCTGCTTTCT  71 22
SH03_RS13815 2768235 .. 2768265 +    -4  -4.12188   TCAGCGGGATCGCTC       CCGAAAAAATCATC TTT GATAATTTGTGCGG       TTTTGAGAATCATCC  61 253
SH03_RS13820 2769474 .. 2769488 +  -3.5  -3.62096   CGCCTGATGACCAAA               GCGGT CATTA ATCGC               TTTAAAATGGTCAAG  53 379
SH03_RS13840 2773744 .. 2773767 +  -3.2  -4.07568   ACGCAACGCCACCGC          CTGTTTGA TTTTTGGC TCAAGCAG           TTTTGCCACCGCGGC  58 516
SH03_RS13870 2778081 .. 2778110 + -13.7   -5.4756   TAAAACTGAACACTA       GCCTGAGTTCG TCCCTCAT CGAACTCAGGC        TTTTTTATTGGCATT 100 69
SH03_RS13880 2779516 .. 2779548 + -10.6    -5.055   AAGCGCATAATCAAT     CGCGGCCGCGTTAGT ACTC AC-GACGTGGCTGCG      TTTTTTCACGGTTAA 100 61
SH03_RS13895 2782181 .. 2782192 +  -5.8  -2.73875   CATAAATATGTAAAA                GCAG ATCT CTGC                 TACTGTTAGGGAGGA  53 43
SH03_RS13900 NONE
SH03_RS13905 2784072 .. 2784086 +  -4.2  -2.84527   GATAAGTAGAACTGA               GAAAGC CAT GCTCTC               GTTTCCTAAGAGTTG  46 185
SH03_RS13910 2784910 .. 2784942 +   -13  -3.14602   TGAACGCAAGCTAGC     TACAGACACGCTCAT CACT ATGA-CGTGTCTGTA      TATTAATAAGCTAAC  95 116
SH03_RS13915 NONE
SH03_RS13920 2785942 .. 2785965 +    -6  -3.94773   TTATGGACTTTGTCC          CGCGGCT-TTA ATC TGACGGCCGCG          TTCCTTTTTTGACTC  66 10
SH03_RS13930 2787221 .. 2787232 +  -4.4  -3.29727   TGATACAGACTCGTT                TTCG GCGA CGAA                 TGTTCATTAATTAAC  51 4
SH03_RS13935 2787508 .. 2787534 + -15.9  -4.34402   TTTTAACATCTTAAG         CGCCCTCGACC TTTAT GGTTGAGGGCG         TTTTGCTATGAACGC 100 115
SH03_RS13940 2794831 .. 2794852 +  -8.7  -5.16572   TTATAATTTCTTAAA           GAGTGTTCC ATTC GGGGCACTC            TTTTTTACATTCCCT 100 48
SH03_RS13950 2797756 .. 2797787 +  -7.2  -2.70854   TCAACGCGCTTGATA      GCCTGGCGAAGATC ATCC GATCTTCGCCTTAC       ACTTTTGTTTCACAT  58 28
SH03_RS13955 2799365 .. 2799397 +  -9.9  -3.34013   TAAGTAAGACACCTG      GCAAATAGCCTGCAA TAA TCGTGGGCTGTTTGC      TTCCTTGGGCGGATA  76 81
SH03_RS13960 2800376 .. 2800410 + -13.9  -2.90382   ATCTCTAATTATCTT     TTAAAGAAATCTGTC TTTAC GGCAGATTTCTTTAA     TCTCATATAATTCTT 100 33
SH03_RS13975 2802733 .. 2802751 +  -5.9  -4.86133   CCAAATTCCTGAAAA             GCCCGCT TTTAT AGCGGGA             TTTTTGCTATATCTG  78 38
SH03_RS13990 2805141 .. 2805158 + -11.3  -5.05505   GCCAAATTCAAAAAA             GCCTGCT TTCT AGCAGGC              TTTTTGCTTTCTAAT 100 37
SH03_RS14040 NONE
SH03_RS14045 2814272 .. 2814299 + -17.8  -5.45652   TGTAACCCTTTACCT        GCCGGTATCCAC GTTT GTGGGTACCGGC         TTTTTTATTCACCCT 100 292
SH03_RS14050 2817457 .. 2817514 +    -7  -3.01791   TGACCTTCTGACAGA ACC-AT-CGCCTCTCTGTGGTCCCGGTCA TCA TGACCGGGACC-CGGACCGGCGCAACGGA TCTTCAACGCCACAT  58 30
SH03_RS14055 NONE
SH03_RS14060 NONE
SH03_RS14065 2819840 .. 2819854 +  -4.3  -3.30124   TGAACTGAGTGGGAA               TTCTG ATGAG CAGAA               TTATCGCCACTACCG  51 33
SH03_RS14070 2820299 .. 2820320 + -10.1  -2.55811   ATAGCCTTCTGCTAC           GGCCTGGTG TTTT CACCACGCC            ACTTTTCCATTTTTA  70 50
SH03_RS14075 NONE
SH03_RS14080 NONE
SH03_RS14085 2821085 .. 2821107 +  -9.9  -4.61873   CTTCATTTCTCCTGA          CGCCAGCCTG AATA CAG-CTGGCG           TTTTCATTTATAAAC 100 56
SH03_RS14090 2821787 .. 2821809 + -16.4  -3.05384   AGAATCAATGAGCAA           TGAGGGTTGC CGG GCAACCCTCA           TTGAATAAAACGGGA 100 87
        sbcB 2827100 .. 2827110 +  -6.8  -2.63991   GTCCTTCTTCTGCCG                 CCCA CTG TGGG                 ATTGCTTCAGTTGCC  52 148
        hisG NONE
        hisD NONE
SH03_RS14165 2836209 .. 2836221 +  -3.3  -3.76224   GTCATTGACGCCTTA                CGTGC GGA GCAAG                TTTGATGAGTCAGAA  53 8
SH03_RS14170 NONE
        hisH NONE
SH03_RS14180 NONE
SH03_RS14185 NONE
SH03_RS14190 2840033 .. 2840056 + -12.4  -5.27335   ATCCGGCAAAAAAAC          GGGCAAGGTG TCAC CACCCTGCCC           TTTTTCTTTAAAACC 100 75
SH03_RS14375 2882468 .. 2882482 +  -7.1  -3.30124   ACGAACGCCTGATGC               GACGC TTTAC GCGTC               TTATCAGGCCTACAG  64 251
SH03_RS14395 2889366 .. 2889379 +  -8.1   -3.4252   CCCATCGCCTGATGC               GACGC TAAC GCGTC                TTATCATGCCTACAA  68 51
SH03_RS14410 2891791 .. 2891831 +  -3.2   -4.9218   TTCGTTAATTGAAAA ATGGCTCAGCAGC-GGC TTAAATCT GCCTGCGCCTGAGCCAG  TTTTTCTGCTGCCTG  71 33
SH03_RS14420 NONE
SH03_RS14435 2898016 .. 2898026 +  -6.8  -3.01712   AAAAAGGAGCACGCT                 CCTG ATG CAGG                 TGTTACCCCCGAGCA  58 21
SH03_RS14440 NONE
SH03_RS14445 NONE
SH03_RS14450 NONE
SH03_RS14455 NONE
SH03_RS14460 2907895 .. 2907912 +  -5.5  -4.18197   ACTTTAATCGGTAAA             CAGCACC TTTA GATGCTG              TTTTCGATACACAAT  65 165
SH03_RS14465 2908304 .. 2908314 +  -4.6  -3.53012   GGGCGTGGGTTGTTG                 GCGT CCG GCGC                 TTTACCAGAGCCCCC  55 51
SH03_RS14470 2909923 .. 2909948 +  -9.8  -4.62085   GGAACCACCTCCTTA         GCCTGTGTAA TCTCCC TTACACGGGC          TTATTTTTTACGCGT 100 162
SH03_RS14490 2912416 .. 2912427 +  -5.8  -3.30124   CGTAATGCCGGATGC                GGTG TAAA CACC                 TTATCCGGCATACAG  57 73
SH03_RS14500 NONE
SH03_RS14505 2914561 .. 2914586 + -12.6  -2.72511   CTGTTTTGCACAATA         C-CGGGCCAGC ATCAC GCTGGCCCGCG         GTTTCAGGGAATGAG  88 431
SH03_RS14550 NONE
SH03_RS14555 NONE
SH03_RS14560 2924853 .. 2924897 + -15.8  -3.79993   GCTGTACTCAATAGG CCGTTGCTGTTGGTCAAGCG CCACT TGCTTGATCACCAGCACCGG TATTTTGCTATCTAA 100 62
SH03_RS14590 2929579 .. 2929597 +  -7.4  -4.08919   CTCTCTGCTCGCTAA             GGATGCTT TTA GGGCATCC             TTTCATTTACACTTT  73 108
SH03_RS14595 2930517 .. 2930533 +  -5.1  -3.28791   TTTATTGTTGCTTTG              TTACCTG TGG CTGGTAA              TTGTGAAACGGGAAT  54 489
SH03_RS14620 2935362 .. 2935377 +  -3.2  -2.65388   CGGGCGAAGAAAACA              GATGAC GGGT GTCAAC               ATTATACGTTAACTG  42 41
        metG 2939100 .. 2939119 + -10.7  -5.01553   ATAATCCCCCTTCAA            GGCGCTG CATCGA CAGCGCC             TTTTCTTTATAAATT 100 37
SH03_RS14640 2940530 .. 2940564 +  -3.5  -3.61398   GAAAGCCATTGCTGC    GTTCCCACA-TGCAGC AATG GCGGCACTGACGGAAC     TTCTTGGGCAAAAAG  53 502
SH03_RS14645 NONE
SH03_RS14650 2946674 .. 2946695 + -11.6  -3.29043   TCCATTAAAACACAG           CGGGCAGT GATGCA ACTGCCCG            TTATCAACACGACTT  86 33
SH03_RS14655 2947203 .. 2947245 +   -16  -2.90725   TTAGGCCTGAAAATA GTAAATAAAAGAACCTGC CTCACCA GCAGGTTTTTTTATTTAC TGTGATCTGCTTTCC 100 184
SH03_RS14660 NONE
SH03_RS14665 NONE
SH03_RS14670 2951848 .. 2951859 +    -3  -3.07816   GGCTTGCGGAGAATC                TTCA GTCA TGAA                 TTCACTACGTCCGGA  46 15
SH03_RS14675 2953934 .. 2953950 + -10.9  -3.46081   TATCCTATATAGCCC              CTGGTGA GAG TCACCAG              TTCCTTGATTAAATA  83 260
SH03_RS14680 2954446 .. 2954476 +   -17  -5.16472   AAGTGAAATAATCGG       TTGGCGGTCATGCT CTA AACATGACCGCCAA       TTTTTTAGCCTTTTT 100 30
SH03_RS14700 NONE
SH03_RS14705 2958873 .. 2958883 +  -6.8  -2.70932   CCGTAAAGGATCAAG                 GCGA TAA TCGC                 TGGTTGCAGACCAAA  53 379
SH03_RS14735 2966721 .. 2966737 + -10.8   -5.8096   GCCGTCTGCCCCGCC              GCCGCC ATTTG GGCGGC              TTTTTGTTTTTTATA 100 91
SH03_RS14750 2969197 .. 2969210 +  -8.1  -4.25104   TACCATGCCTGATAC               GACGC TTGT GCGTC                TTTTCATGCCGACCA  79 88
SH03_RS14765 2972087 .. 2972115 +  -7.3  -3.04398   CACATCCATGTGGGC        TGCCCCGGCCTTC AGG GAACGCCTCGGCA        ATTTTGACGCCACCA  61 292
SH03_RS14775 NONE
SH03_RS14780 2974479 .. 2974489 +  -6.8  -4.87037   GGCTAAAATTTGCGA                 TGCG TCG CGCA                 TTTTTGATGTATGTT  82 35
SH03_RS14785 2975551 .. 2975567 + -10.9  -4.15044   TGGTGTCGAAATTCC              CGGCAAA CAG TTTGCCG              TTTCTTGCGCAAAAC  93 93
SH03_RS14790 NONE
SH03_RS14795 2976646 .. 2976674 +    -6  -3.58242   TACTTCACCTGATAA        GCTGCGGATA TCACATTCC TAACCGCAGC        TATTTGTGAATCTTT  61 77
SH03_RS14800 NONE
SH03_RS14805 2979359 .. 2979390 +   -13  -2.82482   TTGAGCTTATTGTAG      GCCGGATAAAACGC GCCA GCGTTGCATCCGGC       ATTTGGCTCCTGTTG  91 129
SH03_RS14835 2985734 .. 2985765 +  -5.8  -3.21099   AGCGATACGCCCAGT      CC-AGCTGCCATTGC AGG GCGATGGCAGGAAGG      TTAATGGTCACCCCA  55 366
SH03_RS14850 NONE
SH03_RS14855 2988285 .. 2988300 + -11.8  -2.56271   CTGAAGTGAAAGTCC              GCCCGG TTCG CCGGGC               ATCTTCTCATCAGAA  81 32
SH03_RS14875 NONE
SH03_RS14880 NONE
SH03_RS14885 2996337 .. 2996351 +  -7.1  -3.30124   AATGTTGCCGGATGC               GACGC TTAAC GCGTC               TTATCCGGCCTACAA  64 42
SH03_RS14900 2999564 .. 2999583 +  -4.3  -3.28857   ATTATTTTCAATAGC            GCGATTGC CGGAT GCAA-CGC            TTAATACGTTTTATC  51 43
SH03_RS14935 3008928 .. 3008947 +    -5  -3.97443   TGCCCGAAAGGCCCG            TCGCGA GTACTTTG TCGCGA             TATTTTTGACATTTT  61 377
SH03_RS14945 3009575 .. 3009594 +   -10  -5.46129   GCCGCATGCAGAAAA            GGGATAGC TCAG GCTGTCCC             TTTTTTAATTTATTA 100 46
SH03_RS14950 3011254 .. 3011292 +  -8.1  -4.03183   TTTAACGATTTCTGC   GGTTAAAGCGGATGAAG CTCAC CTTCGTCCGCTCTCCCC   TTCTCTTTTCTGCCT  74 36
SH03_RS14955 NONE
SH03_RS14960 3013448 .. 3013459 +  -2.2  -5.61596   AGGTAATTAGTCTCG                TGTC GCTT GGCA                 TTTTTTTATAACGAT  82 374
         spr 3014127 .. 3014144 + -11.3  -5.85244   ACGAGTTAACTGAAA             GCACTGC TTAG GCAGTGC              TTTTTTGTTTTCATT 100 75
SH03_RS14970 NONE
SH03_RS14975 NONE
SH03_RS14980 NONE
SH03_RS14985 NONE
SH03_RS14990 3021501 .. 3021512 +  -2.2  -3.53012   CATGTTGCAGCAAAC                TCGT CCTG GCGA                 TTTACAAACAGGCAC  47 105
SH03_RS15010 3026002 .. 3026027 +  -7.5  -2.70525   AAAGCAGATCACTTA         CCTGTTGCTGG GTCG CCTGTAGCAGG          ATTAATTTAAGAGAG  58 103
SH03_RS15015 3026349 .. 3026378 + -15.9  -2.90219   TTGCTGAATAAGTTG       TAAAAAACCCCGC TCCG GCGGGGTTTTTTG        TATCTGCAGATTATG 100 41
SH03_RS15025 NONE
SH03_RS15030 3029656 .. 3029692 + -12.5  -3.18634   AGACGAGAAGCGTTT    TATCGCTAACTGATTAA TTA TAAATCAGTTAGCGAAA    TATCTTACTTGCAAT  93 13
SH03_RS15035 3029837 .. 3029853 +    -8  -5.76633   AATCCCAAGAAAAAA              CCAACC CTTAC GGTTGG              TTTTTTTATATCTGC 100 43
SH03_RS15055 3034860 .. 3034884 + -11.4  -4.29436   CTTTGTCAACAGTCT          AGCCCGATGG CATCA CCATCGGGCC          TCTTTTTATTTACTC 100 206
SH03_RS15135 NONE
SH03_RS15140 3048012 .. 3048025 +  -8.1  -3.30124   CCGGTTGCCTGATGC               GACGC TGGC GCGTC                TTATCAGGCCTACAC  66 112
SH03_RS15185 NONE
SH03_RS15190 3060369 .. 3060402 + -14.7  -3.55622   GACTAATCACCTGTA     GGCCAGATAAGACGC GTTA GTGTCTTATCTGGCA      TTTGCACCGATTGCC 100 35
SH03_RS15200 NONE
SH03_RS15205 3066792 .. 3066838 + -10.2  -2.90904   TGTATAACACCAAAA CTTGCTATGCAGAAATTTGCAC AGT GCGCAATTTTCTGCATAGCCGC TCATTCTCCTTATAA  76 34
SH03_RS15210 NONE
SH03_RS15215 NONE
SH03_RS15220 NONE
SH03_RS15225 3070836 .. 3070861 + -14.1  -4.64676   ATTAATCAATAAAAA         CACCCGATAGC GAAA GTTATCGGGTG          TTTTCTTGAACATCG 100 36
SH03_RS15265 3083865 .. 3083909 + -12.3  -3.53811   ATGCGACGCTTGCCG CGTCTTATCAGGCCTAC AAATGCTCCCC GTAGGCCGGATAAGGCG TTTACGCCGCATCCG 100 69
SH03_RS15275 3088332 .. 3088344 +  -3.3  -2.64616   TGTTCTAAGCAGCTT                CCCGT ACT ACAGG                TAGTCTGCATGAAAC  42 41
SH03_RS15280 3090803 .. 3090820 +  -7.7  -3.88291   AGCGTGAACGCCTTA             TCCG-GCC TAC GGCTCGGA             TTTGTAGGCCTGATA  72 146
SH03_RS15285 NONE
SH03_RS15290 3092303 .. 3092353 + -13.5  -3.07113   AATCGAGATGTGAAT TGGTTGTAGTGCCAGATACAACGC TTAT GCGTCTTATCTGGC-CTACAACGA TTACATGGCGTAGTA 100 28
SH03_RS15300 3093853 .. 3093884 +    -3  -3.73534   TCAGCTGTACCAGAT      TGAGCTCCATGCCCA TTT TGGGT-TCCAGCTCA      TTCTTAATACGCTTC  53 453
        glpA NONE
SH03_RS15320 NONE
        glpC 3100256 .. 3100283 + -14.2  -4.65895   TAAACTCCTTTCTGA        TGCCCGGTAAGC ATGT GGTTACCGGGCA         TTTTTGCGTACACGA 100 38
SH03_RS15330 3101328 .. 3101352 +    -3  -3.13522   CTGATATTCCGAACT          GTCATTAA AAGGAGAGA TTAATGAC          TATTGCTGAACGGCT  46 18
SH03_RS15335 3101542 .. 3101566 +  -2.7  -3.84825   CCACTAATTAACACA          GGCCCACAG CCGATCC CCATGGGCC          TTTGATATCAATAAC  52 34
SH03_RS15370 3108997 .. 3109018 +  -3.7  -4.79352   ACGACAACCGGGTGC           TGCTGTGCCA GTC TGGC-CAGTG           TTTTATTGTCGATAC  73 512
SH03_RS15380 NONE
SH03_RS15385 NONE
SH03_RS15390 NONE
SH03_RS15395 3114436 .. 3114448 +  -4.1  -2.57985   AATTGCGGGTAGTCG                CTGAT GAA ATCGG                TACGTTACCTTATCG  45 22
        arnT NONE
SH03_RS15405 NONE
SH03_RS15410 3116952 .. 3116977 +  -6.1  -2.58667   AATCCCCCACTTTCA         CGGCGAAGTCA CTCT TCACTTCGGCG          ATCATTTTTATCGCG  50 168
SH03_RS15460 3126076 .. 3126094 +   -11  -3.28712   GCTTATTATTAAAAA             CAGGGCGA AAC TTGCCCTG             TTATCGCAACCCGCG  81 45
SH03_RS15465 3127468 .. 3127510 + -13.7  -3.73224   TAACATCATTGTTAA TTA-ATTCGACCAGTCAGCA AATA TGCTGACTGGTCGAACATAG TTTGCTAAACAGTCA 100 38
SH03_RS15475 NONE
SH03_RS15480 NONE
SH03_RS15490 NONE
SH03_RS15495 3133536 .. 3133554 + -11.7    -2.981   TCTTTTTCAGAAAAA             CCGCCGA GCATG TCGGCGG             CTTTCTGACTTACAA  83 66
SH03_RS15570 3152319 .. 3152345 +  -9.4  -3.28791   CTGTAATCTTAATTT         CACTGCCGGA GATTGCA TCCGGCAGCG         TTATCCCGCCACAAT  74 35
SH03_RS15575 3153000 .. 3153047 + -12.8  -3.28712   CGCTGTAAGCAGCCG GAGTCTG-CGTCGCATCAGGC AATAAGC GCCGGATGCGACATCAGGCTC TTGTCAAAACGGAAA 100 33
SH03_RS15605 3158207 .. 3158234 + -16.4  -4.36914   CTGACTGCCTGATTT        CA-CACCGCCAGC TCA GCTGGCGGTGCTG        TTTTGTAACCCGCCA 100 29
SH03_RS15610 3160463 .. 3160485 + -10.7  -5.64304   CTGCGGATATCTGAA           CCGGAAATA ATCAC TATTTCCGG           TTTTTTATTCTCTTA 100 66
SH03_RS15615 3162142 .. 3162159 + -12.7  -5.32944   CACTAAAAATGTTAA             GAGCCGC AATT GCGGCTC              TTTTTTCATTCTGCC 100 35
SH03_RS15635 NONE
        folX NONE
SH03_RS15645 3166402 .. 3166415 +  -3.7  -3.98214   AAATGCACGAAAACG               CTGGG CATC CCCTG                TTTGTAATACGTAAT  58 295
         flk 3182594 .. 3182606 +  -4.7  -2.78384   GCCAGCGGCCCGGAG                ACGCC GAG GGCGA                TATCCTGAAACGCGG  46 143
        mnmC 3187329 .. 3187340 +  -7.2  -3.30243   GTGTTTGCCGGATGC                GGCG TGAA CGCC                 TTATCCGACCTACGT  64 53
SH03_RS15780 3192722 .. 3192743 + -17.3  -2.72799   CCAGGTACGGGTAAT           GGCAGGGGC GAAT GCCCCTGCC            TGGTGTATCTAAGGG 100 59
SH03_RS15840 3206199 .. 3206219 + -15.5  -3.64822   GTTCGCCTGGATAAA            GTCACCTGC ATA GCAGGTGAC            TTTAACTCCCCCACT 100 47
SH03_RS15845 3207748 .. 3207767 +  -8.6  -5.85425   GATAACAACAAAAAA            GGTGAGTT TTGC GACTCACC             TTTTTTATTTGTTTC 100 172
SH03_RS15855 3209804 .. 3209822 +  -4.5  -2.82516   CGGCAGCGTACTTAC             CCCGC ACTCCATTA GCGGG             TATACTCATGCCGCA  49 65
SH03_RS15860 NONE
SH03_RS15865 3211258 .. 3211291 +    -9  -3.01857   ACAACTATCGAATAG     CACAAAGTCTTGCA ATCCAG TGCAAAGCTTTGTG      TGTATAAGTTTTGTC  68 50
SH03_RS15870 NONE
SH03_RS15875 NONE
SH03_RS15880 3214188 .. 3214202 +  -4.2  -2.56271   ACAACAAACCCCCTC               CAGAAC CAA GTGCTG               ATATTATCATCAACA  45 220
SH03_RS15885 3214992 .. 3215019 +  -8.6  -3.96148   AGCTTGCGTGTAATC        CTCTTTC-ATCTC CAA GGGATAGAAAGAG        TTTGTAGTCGCGGAA  74 381
SH03_RS15920 3217508 .. 3217521 +  -2.5   -4.0942   CATTAATATCATTCT               TAATT AACT AATTA                TTTATCTCATCACTG  57 35
SH03_RS15925 3218404 .. 3218419 + -10.4  -3.86346   TTTCATTACTGCAAA              TGCCCC TGCG GGGGCA               TTTATGGAAACGTAA  86 41
SH03_RS15930 NONE
SH03_RS15935 NONE
SH03_RS15940 3219801 .. 3219813 +  -4.8  -3.20878   AGCGTATTTTTATTA                CCTG ATTTG CAGG                TTCGATTCCCTATTC  51 116
SH03_RS15945 3220203 .. 3220216 +  -2.3  -4.81852   GCCGAATAAGGCACA               CCAGG AACT CGTGG                TTTTATTCATTATGA  66 186
SH03_RS15955 NONE
SH03_RS15960 3224057 .. 3224067 +  -5.4  -3.53224   TATCTGGCAAAAGGC                 CGTT AAT AACG                 TTTCAACGCAGCATC  57 20
SH03_RS15975 3227938 .. 3227960 +  -4.2  -2.71712   TATTTTTCTTCTCTG           TTGTGGTC TTTGGTC GACCATAA           GTTTCGCAGACGAAG  45 62
SH03_RS15980 3231506 .. 3231532 + -10.9  -3.34517   AATGACTAAATAGCG         GCTCCCACAAT GTTCA AATGTGGGAGC         TATTTACCAGCACAT  81 32
SH03_RS16010 NONE
SH03_RS16025 3240131 .. 3240158 + -11.4   -5.4756   TCCCTCCTCAAATCG        GCCATAATAACC TCAT GGTTTTTATGGC         TTTTTTCTTAAGGTT 100 59
SH03_RS16035 NONE
SH03_RS16040 NONE
SH03_RS16045 3245523 .. 3245538 +  -3.3  -3.53444   TTTCAGGGCTAACGT              CAGAA GGTTAA TTCTG               TTTCCAGCAGCGTCA  49 29
SH03_RS16080 3254463 .. 3254480 +  -5.5  -2.77791   GTTATGGCGATGATA             CGGGG CTTTACCT CCCCG              TAATATTGCGTTAAC  50 70
SH03_RS16085 NONE
SH03_RS16090 3255197 .. 3255207 +  -6.8  -2.79796   GACTCATAACCAGAA                 TCCG TGT CGGA                 TCTAATCCCATCAGA  53 281
SH03_RS16100 3257806 .. 3257827 +  -4.4  -3.52073   AAGCCGGGGATAATT           CCCATAAG CGCTAA CTTAAGGG            TTGTGGTATTACGCC  52 55
SH03_RS16105 3258999 .. 3259025 +    -8  -3.14683   GGAGAATAACAAAAA         TGGTCATCTGGA GCT TACAGGTGGCCA         TTCGTGGGACAGTAT  63 49
SH03_RS16125 NONE
SH03_RS16130 3262746 .. 3262768 +   -12  -4.55887   AGCATAAATAAAAAA           CGGCAGGATA TTA TCTCCTGCCG           TTTATCTTTTTACAC 100 34
SH03_RS16140 NONE
SH03_RS16145 NONE
SH03_RS16150 NONE
SH03_RS16155 3264863 .. 3264893 + -17.1  -2.90212   GCACGACCCACCAAT       GTAAAAAAGCGCC CTAAA GGCGCTTTTTTAC       TATCTGCGATACTCA 100 28
SH03_RS16180 3269429 .. 3269451 + -17.8  -2.56571   TAACTTCTGATTGAT           TACTGCCGGG GCT CCCGGCAGTA           TGAATTCACTCTATA 100 31
SH03_RS16190 3271487 .. 3271519 +  -2.8  -4.25104   CTTAAAGCGGACGCT     TC-AGGGGCTGGAC CAGTTGC GTC-AGCCCCTCGG     TTTTAATCAGCAGCG  59 36
SH03_RS16210 3275796 .. 3275815 + -12.8   -3.7347   CGTTTGTGTGAAACA            GGGGTGGC TTAT GCCGCCCC             TTATTCCATCTTGCA 100 65
SH03_RS16215 3276941 .. 3276956 +    -9  -5.26316   AAAATGCGTAAAAAA              GCACCT TTTT AGGTGC               TTTTTTGTGGCCTGC 100 54
SH03_RS16220 3277542 .. 3277565 +  -4.5  -4.11692   GTTAAACTGATGGCG          GAACTCGAG TAATTT CCCGGGTTC           TTTTAAAAATCAGTC  63 14
SH03_RS16225 NONE
SH03_RS16230 3279895 .. 3279912 + -12.7  -5.71983   TGCCGCAGTGAAAAA             TGGCGCC CATC GGCGCCA              TTTTTTTATGCTTCC 100 45
SH03_RS16240 3281234 .. 3281253 +  -2.1   -3.5394   GATAAAACGGTGCCT            GCGGA AGGAAATTAA TCCGC             TTTGGGAAGGCATTT  47 11
SH03_RS16245 3282052 .. 3282110 +  -8.9  -2.78868   ACAACTGTTAAAAAA GTGCGCTTTGTTTATGCCGGATGCGGCG TAAA CGCCTTATCCGGCCTACA-AAATCGTGC TAATTCAATATATTG  67 62
SH03_RS16285 NONE
        murP NONE
SH03_RS16295 3293127 .. 3293154 + -14.2    -3.767   TGGTCAACAATCTGA        GGCCAGTCAGTA ATGT TACTGCCTGGCC         TTTAATCAATGAATC 100 214
SH03_RS16320 NONE
SH03_RS16325 3298143 .. 3298177 +  -7.1  -4.02456   TTCTCGCAAAACGTC    GCCAGCGCCTGTTGGAC AAA GCCCCACAG-CGC-GGC    TTTATGCTGCTCTTT  70 512
SH03_RS16420 NONE
SH03_RS16425 3318394 .. 3318445 + -15.8  -3.30243   TGATGGTGATTGCCG GATGCTGATTGCCGGATGCGACGC TGAC GCGTCTTATCCGGCCTACAGCGTC TTATCCGGCCTACAT 100 38
SH03_RS16445 NONE
SH03_RS16450 3327462 .. 3327483 +  -8.7  -4.70879   ATAAGCAATAAAAAA           GGCGACATG CCAA TGTGTCGCC            TTTTTCAACTTTCCG 100 37
SH03_RS16455 3327851 .. 3327864 +  -2.5  -3.60925   TTCTTAATGTTTACG               TTAAA AATG TTTAA                TATTATTTAATAGTT  50 160
SH03_RS16460 NONE
SH03_RS16465 3329465 .. 3329480 +  -5.4  -2.82623   CGTATCATGGAACAG              CTCGTC GCCT GATGAG               TGGTTCTGCAAGAGG  50 14
SH03_RS16470 3329734 .. 3329786 + -12.6  -2.52623   CGTAGGCCGGATAAG GCGTTAACGCCGCATCCGGCAATG GTGAA CGATGCCTGATGCGACGCTCACGC GTCTTATCAGGCCAG  86 55
SH03_RS16495 3334747 .. 3334765 +   -11  -3.41878   GCCCAGTTCCTGCCA             GTCGCTGT CAG ACAGCGGC             TTATAAGTTACGGCC  83 110
        gcvR NONE
         bcp 3337746 .. 3337759 +  -5.3  -2.68088   CATACCTCACTTCTC               GTGAT CAAG ATCAC                ATTCTCGCTTTCCCC  49 81
SH03_RS16520 NONE
SH03_RS16525 NONE
        hycD 3341518 .. 3341529 +  -3.6  -2.87211   GCTTGCATGGGTCTT                CTGG TTAA CCGG                 TCTGTAAGGAGCACT  45 7
SH03_RS16535 NONE
        hyfE NONE
SH03_RS16545 NONE
SH03_RS16550 NONE
SH03_RS16555 NONE
SH03_RS16560 NONE
SH03_RS16565 3348610 .. 3348625 +  -6.2  -3.15427   GCCAGAAAAATTGCG              TGAGAA GGAT TTCTCA               TTAATAAGGACTGTT  57 23
SH03_RS16570 3350632 .. 3350646 +  -3.5  -3.31766   TGCAGCGGCTGGGGA               TCTCG GTTCG CGAGG               TGTTGTAATCTGCTT  49 3
SH03_RS16575 3351527 .. 3351560 + -11.7  -2.96444   TCAGGAACCCTGAAA     AATCAGCCCGGCGAA ACAG TTCGTCGGGCTGAAG      ATTATTCTTGCGCGA  83 28
SH03_RS16585 NONE
SH03_RS16590 3355097 .. 3355130 +  -3.7  -4.11484   CCCAGATTCAACTGC     CGCGGTGGACGATCG CCGG TGATCAACAACCGTG      TTTTGCCCGATTCCA  60 443
SH03_RS16610 NONE
        purN 3359632 .. 3359651 + -10.7  -4.74504   CCCCCGTAATTAAAG            CGCCAGC TCTGCC GCTGGCG             TTTTTCAATTCACCT 100 43
SH03_RS16620 NONE
SH03_RS16625 3363404 .. 3363432 + -18.2   -3.6279   CGCCGCTTAATACTT        TGCGGGCCGACG AGAAA TGTCGGCCCGCA        TTATTCAGGCACTTT 100 31
SH03_RS16640 3366277 .. 3366306 +  -2.1  -3.63045   TCGCTGTCGGATGCT       TTTGCTGTTTGGG ATTA TCAAAGCGGCAGA        TATTCTTTCATCTTA  49 79
SH03_RS16645 NONE
SH03_RS16650 3367647 .. 3367676 + -12.3  -3.41693   TAATTCTTGAAGATA       AAAAACCCTCTGT AGTA ACAGAGGGTTTTG        TTCATTCATAGTGCA 100 65
        xseA 3372385 .. 3372421 +  -5.8  -4.09685   TCGATATCAAGCCAT   GCCCGTGCTGACAGAAG TAAT CTACTG-CACCACAGGC    TTTTAACACCTGCAA  68 66
        sseA 3390090 .. 3390133 + -18.4  -2.90194   GAAATAAGTATTTTA CAGGCAATAAAAAACCGCCG AATT TGGCGGTTTTTTATTGCTAG TCTGGTTCGCGGCCT 100 34
SH03_RS16785 3400972 .. 3400983 +  -5.8  -3.18264   TGACGAGTTAAGCGA                CGCT CTGA AGCG                 TTAATGACTCAGGCG  55 10
SH03_RS16790 NONE
SH03_RS16795 3403713 .. 3403729 +  -7.9  -3.17212   TTGCACCACTATCAA              CCACGGC AAC GCCGTAG              TTGCTCCCATAATGC  61 281
SH03_RS16810 NONE
SH03_RS16815 NONE
SH03_RS16820 NONE
SH03_RS16825 NONE
SH03_RS16830 NONE
SH03_RS16835 3410517 .. 3410548 + -16.6    -3.794   CGGCGTTAGGAAAGA      TGCCGGATGCGGCG TGAA CGCCTTATCCGGCA       TTTAATAAATTACAG 100 32
SH03_RS16870 3420818 .. 3420835 + -11.3  -3.23216   GCGATAACGTAGAAA             GGCTTCC CGAA GGAAGCC              TTGATGATCATAAAC  84 45
SH03_RS16880 3423803 .. 3423827 +  -7.1  -2.74192   ACATCCGGCAACCCT          TGACGCGGT TTAAATT GCCGCGTCG          TCCTCTTCACCGGTA  59 61
SH03_RS16910 3434113 .. 3434128 +  -3.2  -4.10552   AATCCGTCGAGGATT              GCGC TTTTTTCT GCGC               TTTAATTTCCTGGCG  58 39
SH03_RS16925 NONE
SH03_RS16930 3436810 .. 3436839 + -12.9  -3.11999   TTTATAGTTATTAAA       GGTGCGTCCGACTG GTT CAC-CGGACGCACC       TTAAGTACGTTTCCT  95 170
SH03_RS16945 3437299 .. 3437335 + -10.9  -4.56597   AATTAAAGTTAAAAA    GTAAAACCCCCGTTC CTTACCA GTTCGGGGGTTTTAC    TTTTTAAAGAGAACG 100 71
SH03_RS17010 3448896 .. 3448916 +  -3.9  -4.08216   AATGCCAGCAGCACC            CGATGCG GCAGTCG CGCTTCG            TTTTCCGCCACATCC  60 137
SH03_RS17020 NONE
SH03_RS17025 3451152 .. 3451177 +  -3.2  -4.82901   CTTTGTCGACAAGTT         AAATGCCGGG TTTAAT CCCGACATTA          TTTTTATCCAGCCAC  68 47
SH03_RS17035 3452762 .. 3452785 + -16.8  -3.22884   TATTAACGAAAAAAA          GCGGAAGAGG TCGC CCTCTTCCGC           TTAGTAACTTGCTAC 100 35
SH03_RS17045 3454200 .. 3454225 + -14.7   -3.0169   AATTTGCGGGGAAAT         GCCGGATGGCA GAGT TGCCACCCGGC          TGATTTATCAGGCTT 100 40
SH03_RS17060 3455903 .. 3455923 + -14.7  -4.50976   TCTCTTTAATCTTAC            CGGGGCGCA TCT TGTGCCCCG            TTTTCTCCTCTGCGA 100 32
SH03_RS17065 NONE
SH03_RS17070 NONE
        pssA 3460831 .. 3460847 +  -9.4  -5.04249   ATCCTGTAATCACAA              CCCCGT CCTGT ACGGGG              TTTGTTTTTTGGAGG 100 32
SH03_RS17080 3461408 .. 3461422 +  -4.3  -3.32022   GGAACATCTCAGCCT               TCAGT ATTCC ACTGA               TTGATGTATAAAAAC  51 240
SH03_RS17130 3473646 .. 3473665 + -10.7   -5.9218   ACCTGAAACACAAAA            CGGCAGC CCTTGA GCTGCCG             TTTTTTTATTCTGTC 100 46
SH03_RS17135 NONE
SH03_RS17140 3474263 .. 3474278 + -11.8   -5.4505   TGAGTGTATCGCCAA              CGCGCC TTCG GGCGCG               TTTTTTGTTGACAGC 100 51
        pheA 3475655 .. 3475682 + -18.6  -2.67428   CAACCTGATGAAAAG        GTGCCGGATGAT GTGA ATCATCCGGCAC         TGGATTATTACTGGC 100 33
SH03_RS17160 NONE
SH03_RS17165 NONE
SH03_RS17170 NONE
SH03_RS17175 3480873 .. 3480894 +  -7.1  -3.62224   CAAACAGATAAAAAA           GGGCCAGCC AATT GGCCAGCCC            TTCTTAACAGGATGT  68 49
SH03_RS17205 3485553 .. 3485570 +  -2.7  -3.64192   CGTTGATCATTATTC             TGATCAT CATG GTGGTCA              TTTCAGCCTATTTTT  50 83
SH03_RS17210 3486809 .. 3486834 + -14.7   -2.6563   GCGGAGTAACGAAAA         CGGCCCGGCAT TCGC ATGCAGGGCCG          TGAATTATTACGAAA 100 32
        ppnK 3488491 .. 3488510 +  -2.2  -2.56601   TATAAAACCAGTTTA            TACTGT ACACAATA ACAGTA             ATGGTTTTTCATACA  39 65
SH03_RS17230 NONE
SH03_RS17235 3490708 .. 3490747 + -12.4  -3.70444   AAAGTTGCTCTCAAA  GACGTTAAAAAAGGTGCTC AAT GAGCACCTTTTTTC-TGTC  TGTTATTTATTCGCT 100 45
        smpB 3492313 .. 3492324 +  -4.4  -3.60792   GGCGCTCATAAATCT                GGTA TACT TACC                 TTTACACATTGGGGC  54 218
SH03_RS17255 3494149 .. 3494174 + -16.3  -3.86897   GTCGGATAAAATATT         TATCAGCCCAG CTCT CTGGGCTGATA          TTTCTAAAAGATCGC 100 32
SH03_RS17265 3495650 .. 3495680 +  -3.3  -2.66695   GGAGTGTAAACATCC      TGCTATTTCCGCCA TTAA TAGCGGAA-TAGCC       ATATTTGCTAAACAA  42 77
SH03_RS17270 3497206 .. 3497222 +  -3.7   -2.7035   CAGTTCGGATAAAAG              CTTGTCA TCT TGATAGG              TAATATATAGGTACA  44 95
SH03_RS17275 3498353 .. 3498374 + -10.9  -3.67296   CGACTTTGCTGCGTA           TACCACGCT TTAC AGCGTGGTG            TTTAACTACATCCTC  81 463
SH03_RS17295 NONE
SH03_RS17300 3504399 .. 3504422 + -16.8  -5.56372   GAACAATCCGATGAA          CGGCAGAACC TCGC GGTTCTGCCG           TTTTTGTTTTACTTT 100 327
SH03_RS17305 3505345 .. 3505368 +   -16  -4.88895   CCTATTATTCTCCGA          GCCCTGTCGC AAGT GCGGCAGGGC           TTTCTTTATTTGTTT 100 55
SH03_RS17310 3506342 .. 3506365 +  -4.6  -2.61582   TTACATCTGGCTTTT          GCAGAAATAA AAAA TAGTTTCTGC           GTTGTCCATACCCTG  48 139
SH03_RS17315 NONE
SH03_RS17320 NONE
SH03_RS17325 NONE
SH03_RS17330 3508383 .. 3508409 +  -8.6   -5.1471   TTCCCTACCATAACA         ACCCTGATTGCC TCC GGCGGTCGGGGG         TTTCTTTTTTCTCCT 100 51
SH03_RS17345 3511771 .. 3511786 + -10.4  -4.92363   TCTTGTAACGCATTT              GGCTCC AATT GGAGCC               TTTTTATGACTATTT 100 33
SH03_RS17350 NONE
SH03_RS17355 3513590 .. 3513605 +  -4.7   -3.6707   CAAATCTATTCGTTC              GCAGA ACACGG TCTGC               TTTGAGGTATTACAT  57 5
SH03_RS17360 NONE
SH03_RS17365 3514858 .. 3514873 + -10.4  -4.90869   CCTGGTAACATGAAA              GCCCAC AGAT GTGGGC               TTTTTCGTTGATGGT 100 359
SH03_RS17405 3524165 .. 3524186 +  -2.9  -4.45664   ATAGAAGGTGGTATC           CCTGGCTAT TAGC AAGGTCAGG            TTTTGATTCCATTCA  61 14
SH03_RS17410 NONE
SH03_RS17415 3525402 .. 3525429 + -15.7  -2.62386   TATAATTTAATGTTA        TATCTGCCCCG ATAAAA CGGGGCAGATA         ATATGTTTAGTTTAC 100 36
SH03_RS17420 NONE
SH03_RS17425 NONE
        gabD NONE
SH03_RS17435 3530788 .. 3530827 + -10.1  -3.53811   GGAGGCGACGCTGCG  CGTCTTGTCCGGCCT ACGGGGATCC AGGTCGGATAAGGCG   TTTACGCCGCATCCG  78 56
SH03_RS17440 NONE
SH03_RS17445 3533106 .. 3533128 + -10.6  -4.63184   AATACGCAACACTTG           CCCCGGATAA ATT TTATCCGGGC           TTTTTAGCATCGGTT 100 53
SH03_RS17460 3534256 .. 3534266 +  -3.2  -3.54935   TATTGTCCGTAAGGA                 GTCA CTA TGGC                 TTTGACAACCATTTC  49 29
SH03_RS17465 3534953 .. 3534970 +  -6.2  -5.00616   GGTGAATTTATATTT             CGCCGG ACGCGG CTGGCG              TTTTTTACCAGCGCG  83 192
SH03_RS17475 3536366 .. 3536388 + -19.2  -3.42283   CCTGACTCTTCTTTT           CGCGACTGGC ATC GCCAGTCGCG           TCTTTAACTGGCTTC 100 36
SH03_RS17485 3537249 .. 3537269 + -12.6  -4.89063   AATACGCGTCTTTGA            CCCCGAAG CCTGT CTTCGGGG            TTTCTTTTTGCCTGG 100 57
SH03_RS17490 NONE
        nrdI NONE
SH03_RS17500 NONE
SH03_RS17505 3541318 .. 3541342 +  -7.2  -5.15381   CTCTGTTGCATTATT          CGCCTGAA ACCACAATA TTCAGGCG          TTTTTTCGCTATCTT  90 140
SH03_RS17510 NONE
SH03_RS17515 3543826 .. 3543844 + -12.4  -3.31144   AAGTAACTCTGCACT             TGCCCGGT GAC GCCGGGCA             TTATCACCCTGCCAA  95 35
        proX 3544877 .. 3544906 +  -9.9   -2.6914   AGTAATTTTTATTCG       GGCGGATAAGGCG TTTT TGCCGCATCCGCC        GTTCTGTGCACAATG  71 36
SH03_RS17525 NONE
SH03_RS17530 NONE
SH03_RS17535 NONE
SH03_RS17540 3548090 .. 3548113 + -12.5  -4.56597   AAAGAAAAAATGACT          GGCCAGCAT CGCAAC ATGCTGGCC           TTTTTGGCAAGCAGG 100 73
SH03_RS17545 NONE
        emrB 3550907 .. 3550926 + -12.2   -5.1848   ACTAAGTACAACTAA            GCCAGTTC ATTT GAACTGGC             TTTTTTCAATTAATT 100 36
SH03_RS17615 3558980 .. 3558995 +  -3.2   -3.6692   TTCTGAAAAGACAGT              TGGCAA AGGT TCGCCA               TATTTTCGCGTCGCC  51 165
SH03_RS17635 3560904 .. 3560936 +  -4.4  -4.40572   TATGTTCTGTTGAAG     CAATT-ATACTGTAT GCTC ATACAGTATCAAGTG      TTTTGTAGAAATTGT  63 165
        srlA NONE
        srlE NONE
SH03_RS17660 NONE
SH03_RS17665 3565572 .. 3565589 +  -5.5  -3.27475   GACAGTCGATCAATG             TCACCGG CGGT CAGGTGA              TGTTCTGATCAACAG  55 0
SH03_RS17670 NONE
        srlR NONE
SH03_RS17680 3567871 .. 3567908 +  -4.9  -3.55444   TTAATCCTTCAATCC  CAGACGTTTCGCCAGCC GATGCA GGTTGGCG-A-CGTCGG   TTTCCAGCATCCGCG  55 37
SH03_RS17690 NONE
SH03_RS17695 3572167 .. 3572212 +   -12  -3.53811   GATGCGACGCTGGCG CGTCTTATCCGACCTACG GGGACGCATG TGTAGGCCGGATAAGGCG TTTACGCCGCATCCG  91 66
SH03_RS17715 NONE
SH03_RS17720 3579980 .. 3579990 +  -6.8  -4.14243   GCAGTTCACGGATAG                 CGAC GAT GTCG                 TTTTCCGGTGCGCTA  70 510
SH03_RS17765 3587626 .. 3587655 +  -5.8  -3.61398   TGAATTTCGTCGCCG       TGTCGACG-TGTC ATTTC GACATCATCGACA       TTATTCACCGCAGGG  61 512
        hypA NONE
SH03_RS17780 NONE
SH03_RS17785 NONE
SH03_RS17790 NONE
SH03_RS17795 3591385 .. 3591401 + -13.7  -3.72576   AGTCAATGACCTTTT              GCACCGC TTT GCGGTGC              TTTCCTGGAAGAACA 100 65
SH03_RS17800 3593506 .. 3593531 + -14.8  -2.77701   GATTTAACTGCAAAT         TGCCGGACAG ATCTGC CTGTCCGGCA          TACTATTCATGAGGT 100 34
SH03_RS17810 3596742 .. 3596768 + -11.7  -3.01924   CTGGTGTAATAACAA         TTCCCGATAGT CTTTT GCTATCGGGAA         TATTAACGACAACTG  83 32
SH03_RS17815 3597713 .. 3597739 +  -4.2  -3.58536   ACAGACCAAAACTCG         CTGGCGGCTGGC ACT GGCAATCGCCCG         TTTCACCGTGACTTT  53 241
SH03_RS17825 NONE
SH03_RS17830 3600630 .. 3600641 +  -3.6  -5.40072   AAATCTGGCAACTTC                GGTG ATGA CGCC                 TTTTTTTCACGAGCC  80 73
SH03_RS17835 NONE
SH03_RS17840 3602131 .. 3602148 + -11.3  -2.56095   CGTACCCATACATCC             CCCCATC TACG GATGGGG              TAGGTTAACTATAAC  79 63
SH03_RS17845 3603559 .. 3603578 + -12.2  -4.77165   TGACCTTAATAAAAA            GGTCCGAT GGGC ATCGGACC             TTTTATTGTGCACAG 100 38
SH03_RS17910 3614718 .. 3614753 +   -14  -2.65264   GTTTGAAAATGGGAG    CTGGGAGTTCTACCGC AGAG GCGGGGGAACTCCAAG     TGATATCCATCATCG  95 44
SH03_RS17970 NONE
SH03_RS17975 NONE
SH03_RS17980 NONE
SH03_RS17985 3631928 .. 3631942 +  -7.1  -3.30124   TTCAGCGCCTGATGC               GACGC TTGAC GCGTC               TTATCAGGCCTACAA  64 101
SH03_RS18015 NONE
SH03_RS18020 3640505 .. 3640528 +  -6.6  -2.52795   AACATACCTGAATGG          TTATCCCCGC TGAC GCGGGGAACA           TAAGTTCGACAACTT  55 75
SH03_RS18030 NONE
SH03_RS18035 3643680 .. 3643699 + -13.6  -4.66609   CTCAACCATAAAAAA            TGCCAGCC CGGA GGCTGGCA             TTTTTAAATCAGATA 100 41
SH03_RS18075 3655085 .. 3655116 + -10.9  -4.67943   GCGTTTAGCATCAGT      CTCAAACCGGCTC CAGATA GAGCCGGTTTTGG       TTTTCTGTCTTAACG 100 216
        queF 3663289 .. 3663315 +    -3   -2.5805   ATAAATTTTTTCTCA         ATTTTGCGTG CTGGATT CACGCAGAAG         GTTGTGAAAGGTCAT  42 37
SH03_RS18125 3664764 .. 3664785 + -10.1  -4.72556   CGTAATCTCCGCTCC           CCCGGTGAC GTTT GTTGCCGGG            TTTTCTCGTTTTTGG 100 36
SH03_RS18130 3666608 .. 3666627 + -12.8  -3.27786   CAGCTAAGTCCTTTC            GCGCCGCT TTCG GGCGGCGC             TTCCTCCGTTTTAAC 100 34
SH03_RS18135 3668037 .. 3668055 + -12.4  -3.08774   TAATCGCTCTCCAAA             GGCCTCGT TTT GCGAGGCC             TCTTCCCGATTTCTC  93 38
SH03_RS18140 3668897 .. 3668928 + -14.4  -3.32844   GGTACGGTAACGGCG      AGCCGGATACGCCG CAAA CGTCGTATCCGGCA       TTATCACATCAGCGC 100 31
SH03_RS18155 NONE
        fucI 3674505 .. 3674532 + -12.9  -3.01791   ACAAGCAAGAGTGGT        TAGCCGGATAA GCAATG TTATCCGGCTA         TATTGCAGGAGCGAT  95 90
SH03_RS18165 NONE
SH03_RS18170 3676405 .. 3676423 + -13.1  -2.60212   AATCTCATACCGGTA             CGCCCGC ATGAC GCGGGCG             GTTATCGAATGATGG  91 39
SH03_RS18175 3677195 .. 3677216 +  -8.6  -3.21993   ACGGAAAGGGTAGCA           GGCCGGAG ACGACG CCCCGGCC            TTGCCTGTTATCGCT  67 40
SH03_RS18200 NONE
SH03_RS18205 3682075 .. 3682112 + -14.9  -3.92542   GGTTTAAGCACAGAA   CCGGGTCGGATAAGACG TTCG CGTCTCATCCGACCTGA    TTGTTTAACCCTGAC 100 34
SH03_RS18220 NONE
SH03_RS18225 NONE
SH03_RS18230 3684774 .. 3684787 +  -8.1  -6.02919   CAACCAATTATTGAA               CACCC TAAC GGGTG                TTTTTTTGTTTCTGG 100 35
SH03_RS18240 3687665 .. 3687709 + -12.9  -3.37761   GGTAAGCGATGAAAA TCGTCGGATGCGACATGCG TAACACT CGTACGTCGCATCCGGCAA TTACGTTTATTCCCG 100 36
SH03_RS18305 NONE
SH03_RS18310 3706700 .. 3706715 +  -2.5   -5.0917   TACACTGCGAATATT              CGGCA CATAAT TGCTG               TTTGTTTTTTAATCA  73 61
SH03_RS18315 NONE
SH03_RS18320 3708236 .. 3708253 +  -2.6  -4.13945   GTACGCTCTCCTGCG             GGAGGG CGTACT CACTCC              TTTTACCCTCACAGT  57 47
SH03_RS18325 3708574 .. 3708600 +  -7.3  -2.81421   ATTGAACGTTAACAA         ATAAGGTCAGC ATCCG GCTGGCCTTAA         GATTTTTCTCTTTCC  59 29
         tas 3709720 .. 3709747 + -12.8  -3.13403   ATCCGGCACCATAAG        ATTAACGCCGGT TAAA ACCGGCGTTAAA         TATTAATGACGGCGC  95 27
SH03_RS18345 3714750 .. 3714784 +  -9.3  -3.28791   CCAGTAATTCTTCGA    TGGTCTGGCGACGG CGAATCAA CCG-CGCCTGACCA     TTATCAAACAGAACT  69 64
SH03_RS18355 3717439 .. 3717452 +  -2.3  -3.94811   GTGCAACGTGACTCA               ATGGC ATCC GCCAC                TTTATGCATCGTATT  54 427
SH03_RS18385 3724167 .. 3724204 + -16.7   -4.8083   AGCTAATATCAGTTG   TGG-ATGGTTCAAAATTG CTA CAATTTTGAACCATTCCA   TTTTTCATAATATTC 100 35
SH03_RS18390 3725284 .. 3725309 + -11.3  -4.42386   ATCATACTCTGTTTA         TACGGGCATTT ATTG AAATGTCCGTA          TTTTATAAATAGGCC 100 60
SH03_RS18395 NONE
SH03_RS18400 3727356 .. 3727370 +  -2.8  -4.62069   AGGAATTTTTTTAAC               GGAATC CTT GGTTTC               TTTTTCGAGTCCGAA  68 514
SH03_RS18410 3728182 .. 3728197 +  -2.6  -3.96327   ATATTAGTAAAACAA              CTAATG ATGT TATTAG               TTTGTAGTGAACAGT  54 83
SH03_RS18415 3728864 .. 3728901 + -11.5  -2.75614   ATCATTTGGTTAAAT   TTGCTGGTTATAGTG CAGTTAAC CACTATAACCAGCAC    CTCTTATGTTTTCTT  81 49
SH03_RS18420 NONE
SH03_RS18425 3730961 .. 3730986 +  -9.1   -3.6187   CCAAATAAATCATAA         CGAGATACTTT TATA ATAGTATCTCG          TTCCTTTCATTCAAT  75 49
SH03_RS18430 3731521 .. 3731534 +  -2.3   -6.0427   AGGCTTCAGCAAAAT               GAGCC TAAA GCCTC                TTTTTTTTATATAGT  90 50
SH03_RS18490 NONE
SH03_RS18495 NONE
SH03_RS18500 3741057 .. 3741078 + -15.9  -3.08471   CGAAGTAAAAGGATA           TCCGGCCTG AATT CAGGCCGGA            TTCACTGAGGTTATG 100 33
SH03_RS18510 3744540 .. 3744561 + -13.7  -3.24232   GTGAAATAACCCCTC           GGGCCGATC AGCT GGTCGGCCC            TCTATTTCCAGAGGC 100 32
SH03_RS18515 NONE
SH03_RS18520 3747074 .. 3747093 +   -15  -4.71482   ACTCTTCACTTATTC            CCCTCCGG TTCG CCGGAGGG             TTTTTGGAGTTTGCT 100 43
SH03_RS18525 NONE
SH03_RS18530 3749660 .. 3749687 + -10.5  -4.54727   TTTGTCATCAGTCTC        AGGCCGGGTGG GTAATA CCATCCGGCCA         TTTTCATTTAAGCCA 100 211
SH03_RS18545 3753057 .. 3753067 +  -3.2  -2.88544   CCTGGCAAGAGTGGT                 GCGA TTG TTGC                 TCTATCCCCCTAAAC  43 263
SH03_RS18550 3756224 .. 3756234 +  -2.4    -2.867   TCATTATCTGCTGGG                 CCGC GTG GAGG                 TGTAATCATGTTGAT  41 10
SH03_RS18555 3757581 .. 3757603 + -17.8  -3.05384   CATAAATGACAGATG           CCCTCTTCCC GCA GGGAAGAGGG           TTAAATAAGGAAAGA 100 36
SH03_RS18560 NONE
SH03_RS18565 3761277 .. 3761292 + -11.8  -3.73323   ATATAAATAATAAAT              GGCCGC TTCG GCGGCC               TGTTTCTCTGTTTGA  93 35
SH03_RS18570 NONE
SH03_RS18575 NONE
SH03_RS18580 3765575 .. 3765598 + -13.9  -4.41348   GGCAATCTAATAGAT          TCTCCGCGC CTTTCA GCGCGGAGA           TTTCTTTCAGAGAGG 100 31
SH03_RS18595 NONE
SH03_RS18600 NONE
SH03_RS18605 3770045 .. 3770061 +  -7.2  -3.35798   TTTACCTGTCGGCAT              CCGCTC AAAAC GGGCGG              TTGTCGATAAACGCT  64 47
SH03_RS18610 3770700 .. 3770717 +  -8.3  -3.31263   GCTTAAATAAAAAAA             CCCCGAC ATTT GCCGGGG              TTGTGAGCATAACGT  69 31
SH03_RS18640 3777464 .. 3777493 +  -8.5  -3.77188   TACGCCTGATCTCAC       TGACGGCTTAGCG CATA TGCTTTGCCGTCA        TCTTTATCTTTGCGT  75 32
        ygfZ 3779634 .. 3779651 +  -9.1  -3.50572   CCGCCGAGCACGAAG             CCGTGCC AGAT GGCATGG              TTGTATGGAATGCGT  71 285
SH03_RS18670 3782391 .. 3782401 +  -8.2  -2.67244   CGCGTCCAGGCTCGC                 CGCC GCT GGCG                 TGCATTTCGGTATAA  59 234
SH03_RS18715 3793231 .. 3793247 +  -5.1  -2.92618   GTTACAGCCTGCGGC              GGCATCT CGG AGATTCC              CTTCTTATCTGGCAC  52 234
SH03_RS18720 3794215 .. 3794237 + -13.4  -3.66908   GAAGGGATAAAAAAA           CGGGCAAGTC AGT GACCTGCCCG           TTGATTTTCAGAGAA 100 370
SH03_RS18740 3797740 .. 3797762 +  -8.5  -3.45434   TAATCCATCAAATAA           TGCCTGATA GCACA TATCAGGCG           TTGTCCTCACTTCTT  71 38
SH03_RS18745 NONE
SH03_RS18750 NONE
SH03_RS18755 NONE
SH03_RS18760 3803541 .. 3803560 +  -5.6  -4.11216   CACCGTCAGAAAATG            TCCGCGCT CCAC GGCGCTGA             TTTTGGCCATAAAAC  65 205
SH03_RS18835 3819887 .. 3819918 +  -8.6  -3.16323   CGGGTGCCGAACGTA      GGTCGGATAAGGCG TTCA CGCCGCATCCGACA       TTAATGGCACGTTTT  67 160
SH03_RS18855 3823486 .. 3823496 +  -8.2  -4.36914   GCTTTTTATTTAAGC                 CGCG CGC CGCG                 TTTTATACCCCACAA  82 28
SH03_RS18865 3824964 .. 3824982 + -11.7  -5.48213   TCACCTGCGTTCAAA             GGCCAGC CTCGC GCTGGCC             TTTTTCTTTTGGATA 100 48
SH03_RS18870 3826784 .. 3826796 +  -4.7  -3.07787   GCTTCCTCCCATCGC                GGAGG AAG CCACC                TCTTGCAGTCATCTT  51 50
SH03_RS18875 NONE
SH03_RS18880 3828183 .. 3828205 +  -4.7  -4.71061   TACCCCACGCGTACA           ACCGCGTGG GGAGA CGACGCGGA           TTTTTAACTATGCGT  71 73
SH03_RS18885 NONE
SH03_RS18890 3829946 .. 3829986 +  -2.3  -5.00616   TCGTTGAGACTCTGA  GTGACAGCGCCCTTCTTTC CAC GCATACTGGGCGCTGTTGC  TTTTTTGAACCAGGA  68 62
SH03_RS18895 NONE
SH03_RS18900 3831099 .. 3831130 + -11.6  -3.17475   TGGCAGCGGCTATAG      GTCTGATAAGACGC GTTA GCGTCGCATCAGAC       ATTTATTGCCTTTGT  84 127
SH03_RS18910 NONE
SH03_RS18915 3833450 .. 3833479 +  -2.9  -3.21416   ATGCTGCTGCCAGGG       CTGTGGATGGCGTT ATG AATGCCGTA-ACAG       TTAATGATGACGGTC  44 8
SH03_RS18920 NONE
SH03_RS18925 NONE
SH03_RS18930 3835546 .. 3835577 + -11.6  -2.60392   TGGCAGCGGTTGTAG      GTCTGATAAGACGC GCAA GCGTCGCATCAGAC       GTTGATTGCCGGATG  80 87
SH03_RS18965 3841130 .. 3841141 +  -3.6  -3.55761   TACAGCAGTTACGCA                CTGG CGCG CCGG                 TTTAGCGCGTGAGTC  51 9
SH03_RS18970 3841455 .. 3841478 +  -8.9  -3.05384   TAAAAAATAAAAACA          GT-GCCGGAG CACGC CTCCGGCAAC          TTGCATAAAAACAAA  68 31
        mltC 3842737 .. 3842752 +  -2.5  -4.57569   GAATCCCATCATCTC              GCACG GTCAAA TGTGC               TTTTTCAAACACTCA  61 169
SH03_RS18980 3844058 .. 3844097 + -15.2  -3.81146   AGCCACTAATTACGC  AAAGAAAAACGGGTCGCC AGAA GGTGACCCGTTTTTTTTA   TTCTTACTTCAACAC 100 32
SH03_RS18990 3847319 .. 3847332 +  -3.7  -3.65351   TGCCGCTTTCCGCCG               CCTGG ACCG CCTGG                TTTGCCTGACAATGC  53 3
SH03_RS18995 3847537 .. 3847553 + -10.8  -5.10154   ACTAATTCTTAAGAA              CCCGCC CACAA GGCGGG              TTTTTGCTTTTGGAT 100 40
SH03_RS19030 3856634 .. 3856676 +   -13  -3.54424   TAAGACAGAATAATG TAAATGAAGCCGGATGAT ATTAACG ATCATCCGGCTTTATTGA TTTACGAGACTAACA 100 133
SH03_RS19065 3866181 .. 3866200 +  -2.9  -3.33151   CGCCCCAATGCGTTC            CA-GCATG TTATT CATGCCTG            TATTGGTTTCGAGGA  47 89
SH03_RS19075 3868311 .. 3868322 +  -2.2   -2.7186   AATGGCGAAGAAACG                GTCT AAAT AGGC                 TGATTCAAGGCATTT  40 61
SH03_RS19095 3871918 .. 3871940 +  -9.1  -4.08692   AGTCAAAAATGGAAA           TGCCCGATC GCCAG GACCGGGCA           TTTTCAGGAAGGTTA  83 39
SH03_RS19110 3876758 .. 3876771 +  -8.1  -3.30124   CACAATGCCTGATGC               GACGC TGCC GCGTC                TTATCAGGCCTACGA  66 109
SH03_RS19170 3886132 .. 3886146 +  -2.8   -3.1811   ACGTCAGATGGATAA               TGACGT ACC ACATCA               GTTTGTTATCCGGGA  45 139
SH03_RS19180 3887633 .. 3887659 + -14.5  -2.86539   TTTAGGTTAAAAAAA         TGCCCGGTTGT GAAAA GCAACCGGGCA         TCATTGTGAATTCAC 100 31
SH03_RS19200 3890531 .. 3890551 +  -3.3  -3.29459   TTGGACAATTTTGCA            GACATTTTA TTG TGAAAAGTC            TTAAATTGTTGCGTC  47 52
SH03_RS19205 3891314 .. 3891339 + -14.8   -3.5486   CCTGACGATTTTCCC         CGTTCCCGGT TGCTGT ACCGGGAACG          TATTTAATTCCCCTG 100 36
SH03_RS19220 3893660 .. 3893683 + -16.8  -3.25823   TTAAGTTCACAACAC          CTCACCGGAG CCTG CTCCGGTGAG           TTCATATAAAGGAGG 100 86
        dkgA 3894544 .. 3894572 + -10.9  -3.05775   TAACATGCAAATTCT        CCCGGTGGCGGTA ATG TTCCGCTACCGGA        CTTTTCAGAAATCAT  79 38
SH03_RS19230 NONE
SH03_RS19235 3895972 .. 3896003 +  -8.7   -5.0538   GCAGAATGATAAAAA      AATCCCCGGTAGC GTGTCA GTTGCCGGGGATA       TTTTTTAACGTCCAA 100 32
SH03_RS19285 NONE
SH03_RS19290 3908923 .. 3908954 + -14.6  -4.30576   CTGGTAACTTCTCTG      TCTATGAGAGCCGT TAAA ACGACTCTCATAGA       TTTTACTAATAGCAA 100 34
SH03_RS19300 NONE
SH03_RS19305 3910549 .. 3910573 + -14.3  -3.66578   TTAATCCTGCCTTGT          TTGCCCGGCCA TCC TGACCGGGCAA          TGTTCTTTCCTTTAA 100 37
        tolC NONE
SH03_RS19340 NONE
SH03_RS19345 NONE
SH03_RS19350 3918669 .. 3918696 + -14.2  -3.67558   GTTGAATAAGCCACG        ATACCGGATGGC ACTC GCCATCCGGTAA         TTGTTAGCCTATCTG 100 32
SH03_RS19360 3920419 .. 3920439 +  -9.8  -3.31322   AAAACAACATCAGAA            GTTGTCCA GCGCA TGGACAAC            TTCTGCCAGCTTCAC  76 40
SH03_RS19375 3922227 .. 3922265 +  -4.9  -4.24397   ACATTCGTCTTTAAT  GCACTGTAAATTATGA ATTAATCC TC-TAATTTATAGTGC   TTTCTATTACCTTAT  66 41
SH03_RS19380 3923052 .. 3923075 + -12.4  -2.72379   TTACGAGTAATCGCA          TTTGGCCGGG TTCG CCCGGCCACA           TCATTAACGGATTAA  88 31
SH03_RS19385 NONE
SH03_RS19390 NONE
SH03_RS19395 NONE
SH03_RS19400 NONE
SH03_RS19405 3928799 .. 3928814 + -11.8  -3.53164   ATACAAACACTAAAA              CGGGCC ATCA GGCCCG               TTATATCAGTGCTCT  91 47
SH03_RS19415 NONE
SH03_RS19420 3931625 .. 3931647 +  -8.4   -5.4251   CTCTTCCAGGAATAA           TCCCTGGC CCAAAAA GCCGGGGA           TTTTTTATATCTGCG 100 44
SH03_RS19425 NONE
SH03_RS19430 3932831 .. 3932848 +  -7.7  -3.23979   TCACCACGTTTACGC             GCTG-CCG CTA CGGCCAGC             TTCAGTTCCTCTTCG  61 522
SH03_RS19455 NONE
SH03_RS19460 3940277 .. 3940308 +   -13  -2.60392   CAACGACAGTTGTAG      GCCTGATAAGACGC GCAA GCGTCGCATCAGGC       GTTGATTGCCGGATG  91 92
SH03_RS19475 3942719 .. 3942733 +  -5.7  -2.63479   GACCGTTCCCCAACT               CCCAT ATTCC ATGGG               TCATATCGCGCTCTT  47 352
SH03_RS19485 3944439 .. 3944449 +  -2.4  -3.29144   AAAATCTGTCTCACA                 CCCG GAG CGCG                 TTATGAAAAAGATCC  45 9
SH03_RS19490 3945064 .. 3945083 +  -9.3  -4.57073   TCAAATAACCCTCCC            GGAGAGG CTCACC CCTCTCC             TTTTTCGCAGGCATA  95 33
SH03_RS19495 3946743 .. 3946768 +  -3.9    -5.243   GTACAAAATTCCGGA         CGC-GCGTAGAA CAC TTCGCCGCGGCG         TTTTTTCATCATTTC  84 201
        rpsU 3948124 .. 3948150 + -10.9  -4.40882   AGTTGTAGTTGTAAG        GCCGTGC-TTCC GAAA GGAATGCGCGGC         TTATTTTCGTTTATG 100 73
        dnaG 3950032 .. 3950044 +  -4.8  -3.28269   CGTAATTATCGTTGG                CGGT AAACA ACCG                TTGGATTTCAGCGTT  53 125
SH03_RS19515 3952024 .. 3952042 + -11.7  -5.24129   GGCCCTCTGCACAAA             CGCCACC TTTTC GGTGGCG             TTTTTTATCGCCCAC 100 81
SH03_RS19525 3952765 .. 3952786 + -14.5  -5.71295   ACCAGATATAGCAAA           GGCTGACGA GAAA TCGTCAGCC            TTTTTCTTTTTATAT 100 37
SH03_RS19535 3954651 .. 3954680 + -11.3  -3.57144   TTAATGCAGTACCGT       CACCGCGTCTTCC AGTC GGCTGGCGCGGTG        TTTCACCATCGCCGA  89 194
SH03_RS19545 3957959 .. 3957991 + -12.8  -4.82901   AGAAGCGTAATATCA      AATCGGATGGCGAT ACGAC GTCGCCATCCGATC      TTTTTATACGACGCG 100 31
SH03_RS19555 3959538 .. 3959576 + -12.6  -2.64766   CCGTTAAATCCCCTT  ACA-CACTGTCCGGCAA TCGTTT TTGCCGGACAGTGCTGC   CGTTTATTTTCGTGA  88 34
        ebgA NONE
        ebgC NONE
SH03_RS19570 3964774 .. 3964805 + -11.1  -3.05274   AAAAATGAGCAGGCA      TTTTCCCTCTTCCT GGATG AGGA-GAGGGAAAA      TAGTTTCTGCCTTTA  79 52
SH03_RS19575 NONE
SH03_RS19580 3968341 .. 3968352 +  -7.2  -3.30243   ACTGCTGGCGGATGC                GGCG TAAA CGCC                 TTATCCGCCCTACAT  64 47
SH03_RS19585 3970772 .. 3970806 + -10.6  -2.50816   GATTTAAATCGTTAT     TTGAAGCGCCGGATGC AAC GCATCCGGCACGTCGC     GTTAATCAATAAACA  73 34
SH03_RS19610 NONE
SH03_RS19615 3974302 .. 3974316 +  -2.8  -2.87564   AGCATGGCTGTCCGG               CGCA GAAATAA TGCG               TATCTGCGCACGTCG  42 15
SH03_RS19620 3975535 .. 3975554 + -10.8  -5.56673   CCGGGCAACCCGAAA            GGAATACG CAGA CGTATTCC             TTTTTTGTTGTAAGT 100 183
SH03_RS19625 3976778 .. 3976792 +  -5.7  -5.30189   CCAAACGGGGCGAGG               GGACT GACCG AGTCC               TTTTTTGATGTTGTC  86 178
SH03_RS19630 3978277 .. 3978301 + -14.3  -4.44974   TAATTAATTGTTTAA          CCCCTTTCGTC TAC GGCGGAAGGGG          TTTTCTCAACTTTAA 100 34
SH03_RS19650 3983634 .. 3983651 + -12.7   -4.7497   TAGTTTCCCTTCAAA             GCCGCCT TCTC AGGCGGC              TTTTTCATCACTGCG 100 57
SH03_RS19655 3984522 .. 3984541 + -10.7   -4.0942   GAAATTCCTGTCCGA            CAGGCGC TGCAAT GCGCCTG             TTTGTCTCGTCGGTA  93 39
SH03_RS19660 NONE
SH03_RS19665 3985966 .. 3985991 + -11.9   -2.6914   CTGTCTATGATTAAT         GAGGCGGTGGT TAAC ACTACCGCTTC          GTTGTCTGGACAATC  83 89
SH03_RS19670 NONE
SH03_RS19675 NONE
SH03_RS19680 NONE
SH03_RS19685 3987466 .. 3987484 + -12.4  -3.37071   GGTTAACTTCCCTCT             GGCCGGAG CCA TTCCGGCC             TTATCCCTCAAATTT  95 35
SH03_RS19690 3988062 .. 3988079 + -11.3  -4.87626   CTTAACGATAAAAAA             CGAGGAG GAAG CTCCTCG              TTTTTGCTATTGGAG 100 53
SH03_RS19695 3989096 .. 3989113 + -11.3   -2.8664   CTTCGGTTAAAAAAA             GGCACCT TACG AGGTGCC              TCTGATAATTAGCTA  81 31
SH03_RS19700 3989763 .. 3989785 + -10.6  -4.60977   AAAACAAATCTGCTC           GCCGGATG TCTGACT CATCCGGC           TTTTATCATTATGTT 100 39
SH03_RS19705 3990358 .. 3990375 + -12.7  -5.07486   ATTAATCTTAGAATT             GGGGCGA TATT TCGCCCC              TTTTTATTAACAATA 100 36
SH03_RS19715 NONE
SH03_RS19720 3992306 .. 3992317 +  -7.2  -3.30124   CAGGTTGCCGGATGC                GGCG AAAA CGCC                 TTATCCGGCCTACAA  64 44
SH03_RS19780 4006009 .. 4006023 +  -4.2  -3.59402   TTTTGATCGGCGTAG               GCCACA GAA TGTTGC               TTCGTTTACTGTAAC  54 157
SH03_RS19785 4006648 .. 4006662 +  -2.9  -5.23396   CTTTTTTTCACCCGA               TCATT TTAAT AATGA               TTTTTATTGATTATT  73 1
SH03_RS19790 4008241 .. 4008254 +  -9.5  -4.65895   CTCCAAAAGTAAAAA               CCCGC CGAA GCGGG                TTTTTACGTAAAACA 100 385
        garD 4015159 .. 4015176 +    -7  -5.38549   ACGTCCCTCGCAAAA             CATGGC CTTAGT GCCATG              TTTTTATTGTTTAAA  89 52
SH03_RS19820 NONE
SH03_RS19825 4016185 .. 4016203 +  -4.4   -3.1505   TTCGCAGTCCTTCCA             GGCTATCC GCA GGAATGCC             TTCATCAACAATGAT  49 130
SH03_RS19835 NONE
SH03_RS19840 NONE
SH03_RS19845 NONE
SH03_RS19850 4019923 .. 4019946 +  -3.2  -5.12987   TTTGCTCCTTTATTG          GGCCTTCAC TTCCCCC GT-AAGGCC          TTTCTTTTTCTTTCG  75 44
SH03_RS19855 NONE
        kbaY 4022314 .. 4022335 + -10.9  -2.56596   ATTTATCCCAATGTA           CTTCCCGAT TAAT ATCGGGGAG            TGCCTTAATGGAAAA  76 57
SH03_RS19865 NONE
SH03_RS19870 NONE
SH03_RS19875 4024556 .. 4024580 +   -10  -3.90856   TTTTGTAAATGGAAC          GAGGCACTGC GTCTG GTGGTGCCTC          TTTACTTAAGGAATT  86 33
SH03_RS19880 4025381 .. 4025424 +  -2.5  -4.22524   AAATAACATTTGACT GGGTTGAACATAACGCC GATAGCAAAA GGAGTTATGTTCAACAA TTTAATTTTAGATAT  57 102
SH03_RS19885 4026297 .. 4026326 + -19.5  -4.50241   ACCGTTAATACGTTA       GGGCGTTATCTGA CCTG TCAGATAACGCCC        TTTTCCTTCCTCTTT 100 33
SH03_RS19890 NONE
SH03_RS19895 NONE
SH03_RS19900 4030815 .. 4030831 +  -6.5  -5.00616   ACGCCGTGAATTTCT              GCGGC CAGCGCC GCCGC              TTTTTTCAGCGGCAG  83 129
SH03_RS19910 NONE
SH03_RS19915 NONE
SH03_RS19920 NONE
SH03_RS19925 4035287 .. 4035301 +  -7.1  -3.30124   TGTAATGCCTGATGC               GACGC TTGCC GCGTC               TTATCAGGCCTACAA  64 49
SH03_RS19940 4038033 .. 4038043 +  -8.2   -5.4833   CGGCCCACTCATCTG                 CGCG TGG CGCG                 TTTTTTCTTCCGTCA 100 287
SH03_RS19950 4038883 .. 4038894 +  -4.4  -2.87132   ACATAGCCAATGACC                TGAC CTTC GTCA                 TCTGTCGCCACCAGC  47 361
SH03_RS19965 NONE
SH03_RS19970 4041681 .. 4041701 +  -6.3  -3.18264   AACAACTTTAACTAC            TCTTTAATG CAG TATTAAAGA            TTAATCGGTAACAAA  57 60
SH03_RS19975 4043113 .. 4043123 +  -2.4  -4.07568   TGGCGGGGCAAAGGT                 CAGC AAT GCCG                 TTTTCAAGCGGCCCA  56 404
SH03_RS19985 4044233 .. 4044246 +  -6.7  -2.72344   TTTTACAGATTGTGT               TCGCT GTTC AGCGA                TGATTACGCATCACC  56 9
SH03_RS20040 4058271 .. 4058291 +  -8.9  -3.25356   GTAATTCGACATCAA            CCCTGCCCT TCA GGGGTGGGG            TTACCTTGCTTATCC  71 37
SH03_RS20080 4066448 .. 4066475 + -13.6  -3.25946   CACGCTCTGTTCGTT        GATAAAAGGCCGC ATA GCGGCCTTTT-TC        CTTTCTTTACAATAC 100 111
SH03_RS20090 4068844 .. 4068867 +  -8.2  -3.36327   CATCAGGCTGATTTG          GCGTTTATCA TCAG TGATTAACGC           TTGTAAATGAACTCA  69 194
SH03_RS20115 4072974 .. 4072992 +   -16   -2.7386   AATCCCCTCCCCTCA             TCCCGCGC AGC GCGCGGGA             TGGTTCCAGTAAGTT 100 39
SH03_RS20120 4073782 .. 4073797 +  -5.4  -3.68351   GGCACATGCATAAAG              CGGTTT TCAA AGACCG               TTTCGGTGATAAACC  58 341
SH03_RS20160 NONE
SH03_RS20165 NONE
SH03_RS20170 NONE
SH03_RS20175 NONE
SH03_RS20180 NONE
SH03_RS20185 NONE
SH03_RS20190 NONE
SH03_RS20195 4084768 .. 4084792 + -12.9  -2.95459   TAGCATGTGCATGGC          GGTCTGTTGTG CGG CACAACGGGCC          ATTTGTACGGTTAAT  95 54
SH03_RS20200 4085360 .. 4085374 +  -2.1  -3.28712   GTAGTTATTCGGTAA               TGTCT CTTTT AGACG               TTGTGAGGAGAAACA  45 37
SH03_RS20205 NONE
SH03_RS20210 4086505 .. 4086526 + -10.3  -2.75963   CTTTAATTCTGGTTT           TGATGAAGA TTAA TCTTCATCA            CTTTGACATACAACT  75 13
SH03_RS20215 4087520 .. 4087530 +  -5.4  -4.22748   GAAATTCTTCTCGGC                 TGAC TCA GTCA                 TTTCATTTCTTCATG  65 182
SH03_RS20225 NONE
SH03_RS20230 4089575 .. 4089606 +  -2.3  -4.40358   GTCTACTTGTGATAA      C-AATGCCGGACAG GAGTA CTATCAGGCATTCG      TTTTATACGATCGGT  58 29
SH03_RS20235 4090898 .. 4090924 + -12.4  -3.53444   ATTTCAGCGGTTTCG         AATTCTGCAGAC AGT GTCTGCAGAATC         TTTAAAACGAACTAA 100 40
SH03_RS20270 4098179 .. 4098205 + -15.3  -3.23853   AAGTCATTAAAAAGA         CAAAACAGGCC GCCTG GGCCTGTTTTG         TATTACTTCACAACG 100 39
SH03_RS20300 4102529 .. 4102547 + -12.4  -2.83517   ACTAATTTATTTTTC             GGGCGCAG CCA TTGCGCCC             TCCTCTTCTCTCCCT  89 36
SH03_RS20305 4104049 .. 4104078 + -10.7  -3.11192   CGTTAATGTCGTAAA       CCGGGCATCAGGC TTAC GTGTGATGTCCGG        TTAACTCGTGGTATG  79 35
SH03_RS20310 4105219 .. 4105236 +  -9.1  -5.55769   GCTCAAAACAAAAAA             CCGGAGT CTGT GCTCCGG              TTTTTTATTATCCGC 100 48
SH03_RS20320 4107105 .. 4107135 +  -8.2  -3.30039   CCAGGAGCTTTAATC       TCTGCCCCGTCGTT TCT GACGGCGGGGAAAA       TGTTGCTTATCCCTC  69 28
SH03_RS20325 4107758 .. 4107774 + -15.1  -5.78622   TTGTCCGACGATATT              GCCCCCG GTT CGGGGGC              TTTTTTTTGCGCTAA 100 53
SH03_RS20350 4112572 .. 4112586 +  -4.2  -3.90744   CTGGCCCACGCCAAC               CGGCAA ACT TTGCCC               TTCTTTACCGCAGAC  58 219
SH03_RS20390 4123503 .. 4123519 + -10.9  -2.57985   CTTCCACCAGGCTTT              GAACCAG CAG CTGGTTC              TCCGTTCGCTTCTCA  69 216
SH03_RS20400 4126628 .. 4126648 +  -6.7  -2.78696   TATGTTGCTTTGCCT            GGGCGACGC TAC GCTTAGCCC            CTTACTTATTTCTGG  57 266
SH03_RS20410 NONE
SH03_RS20415 4126948 .. 4126966 +    -3  -2.98381   CTTACGTTATAAGAA             GTTCCGTC GAT GATGGCGC             TAATTTCGTGAATTG  44 13
SH03_RS20420 NONE
SH03_RS20425 4129215 .. 4129231 + -13.7   -5.5112   GCTAAAGCGTCAAAA              GGCCGGA TTT TCCGGCC              TTTTTTATTACTGGG 100 45
SH03_RS20430 NONE
        panF NONE
        prmA 4132126 .. 4132140 +  -6.4  -3.86202   CCATCTCAGAGGATT               GGTCAA AGT TTGGCC               TTTCATCTCGTGCAA  65 271
SH03_RS20445 NONE
         fis 4133526 .. 4133551 +  -8.2  -5.29782   ATGCTTGATTAAAAA         GGCGCTACTC GGCATG GGGAAGCGCC          TTTTTTATAGGTGTC 100 55
SH03_RS20455 4134480 .. 4134490 +  -3.2  -2.94202   AAAGGATGTGTAAGC                 CTGG TTT TCAG                 ATTATTCATTTCGTG  44 39
SH03_RS20460 4134743 .. 4134767 +  -5.2  -4.13911   GAATTTACATGACAC          TTAATTCATT CGTTT GATGAATTAA          TTTCGTTATGTTTTC  65 39
SH03_RS20470 NONE
SH03_RS20475 4140077 .. 4140100 +  -8.2   -3.9392   GATAAATCAGAAACA          TAAAGGCGCT TTCG GGTGCCTTTA           TTATTTCCAGTGAAA  77 36
SH03_RS20480 4140548 .. 4140567 + -12.8  -4.59773   CGAAATAACTGAACA            GGGCGCGG AGTT CCGCGCTC             TTTTTAACGATACAG 100 33
SH03_RS20485 4140990 .. 4141013 +  -6.6  -2.75481   AAAAGATGATGATAG          CCACACTGGC TGCC GCCAGCGTGC           TGCTTGCCGTTGCAA  57 73
SH03_RS20490 4142012 .. 4142033 + -13.7  -3.07233   TCGGTGTGAGGTAAC           GAGCGTCGC TACG GCGGCGCTC            TCTTCAGCGTTATGC 100 42
SH03_RS20495 4143220 .. 4143230 +  -2.4  -2.71731   GAATATCTATAACCG                 CCGC ATC GCGA                 TCGTTGAACGCTAAG  40 1
SH03_RS20500 NONE
SH03_RS20505 4145150 .. 4145169 + -13.6  -3.83214   TTCGAAAAGCAAAAA            GGCCATCC TTTC GGATGGCC             TTTCGCTTGATTTGA 100 52
SH03_RS20545 4152106 .. 4152116 +  -3.2  -3.96327   CACCATGCCAGAAAA                 GGAG TTT TTCC                 TTTCTGATAGAACAT  55 412
SH03_RS20580 NONE
         fmt 4157106 .. 4157124 +    -8  -5.01535   TAGTCCACTCTTCTA             AGCCCGGT CTT GCCGGGCG             TTTTTATACTTATGA  95 41
SH03_RS20590 4158445 .. 4158459 +  -3.6  -3.35679   ATAACGGGTCGCGAC               TGATGA AAA TTATCA               TTCTGGGTGCCGGCC  49 45
        trkA 4159825 .. 4159852 + -15.8  -3.89938   CTTTCTTCTTGTAAT        TAATAAGGCGTC TAAT GACGCCTTATTA         TTTCCCTTTGATTAT 100 27
        mscL 4160522 .. 4160540 +  -3.2  -3.06686   TAAGGGATCATGTAG             TAATGC TTCTATC GCATTA             TCCTTTATCTGCCCT  43 184
SH03_RS20770 NONE
SH03_RS20775 4180240 .. 4180262 +    -4  -3.26947   CAACAGTCACGCCCC           TGCGCCATCG TCA CGGTGAGGCA           TTCATATGAGAATTC  51 7
SH03_RS20780 4181725 .. 4181746 +  -4.3  -2.61106   TATGCGCGTCGCCAG           TGCCACGCT GGAG AGCGAAGCA            TGAATTATCGCTATC  45 1
SH03_RS20785 NONE
SH03_RS20790 NONE
SH03_RS20795 NONE
SH03_RS20800 NONE
SH03_RS20805 NONE
SH03_RS20810 NONE
SH03_RS20815 NONE
SH03_RS20820 NONE
SH03_RS20825 4188197 .. 4188224 +    -7  -3.25102   CCTTCTTCGCGGATC        TGTGCTTGCAGA TAAT TTTGCAGGCCCA         TCTTCTGAATCAGAT  61 73
SH03_RS20890 4199793 .. 4199821 + -14.7  -2.85763   ACATTATTGAGGCGT        AAAAAAAGCGGGG ATT CCCCGCTTTTTTG        TCACTTTTTCGGTAT 100 31
SH03_RS20915 NONE
SH03_RS20920 NONE
SH03_RS20925 NONE
SH03_RS20930 4207436 .. 4207454 +  -6.7  -3.38046   GGCAGAGAGATCAAC            CGCACGCG CAAC CGC-TGCG             TCTTTCAGGTCGCGA  59 173
SH03_RS20940 NONE
SH03_RS20945 4208693 .. 4208717 + -16.5  -4.86731   TTAATCCCGTCGGAG          TGGCGCGTTAC CTG GTAGCGCGCCA          TTTTGTTTCCCCCGA 100 37
SH03_RS20950 4210857 .. 4210881 +  -4.2  -3.45571   TAAGGCATTCACGCC          GCATCCGACA TCTTT TGCCTGATGC          TTCGTATTTACGCCC  52 60
SH03_RS20980 4215686 .. 4215713 + -10.5  -4.43213   CTCATTAATTGCTCA        TGCCGGACGGC ACTATC GTCGTCCGGCC         TTTTCCTCTCTTCCC 100 33
SH03_RS20985 NONE
        nirD 4218815 .. 4218835 +  -8.9  -4.68994   CGGTTAATGTTTTAA            CGGGAGGCG CAA TGCCTCCCC            TTTTTGCATGGTCCT 100 34
SH03_RS20995 4219724 .. 4219734 +  -2.4  -3.39895   TTTAATCAAACTGAA                 ACGG CTG CCGG                 TTAATTACTAAGGGG  45 11
        cysG 4221140 .. 4221157 + -11.3  -3.74762   CATTAATTTAACCCG             GGCCAGA GAAT TCTGGCC              TTCTTAATGACTCTT  95 35
SH03_RS21005 4221584 .. 4221611 + -10.6  -4.65722   CCGGTTTAATTGCCC        GACGCCCTCTGGA TTT TCC-GAGGGCGTA        TTTGTTTCTATGTCC 100 65
        frlA NONE
        frlB 4224227 .. 4224248 + -12.9  -3.53343   AATATTAATCCCTCT           CCCGGCCCG GCAA CGGGCCGGA            TTTACGCAAGGAGTT 100 33
SH03_RS21020 NONE
SH03_RS21025 4225888 .. 4225915 + -16.4  -2.80699   GCCTGGTAGGTATAA        CGTTGGCGTGAG CATC TTCACGCCAACG         TGCTGTTACTTGCCG 100 32
SH03_RS21030 4226725 .. 4226767 + -14.9   -4.1899   TAACCGTAGGCCGGA TAAGATGCGCCAGCATCGC ATCCG GCGATGCTGGCGCGTTGAA TTTTACATCCCGTAC 100 38
        mrcA 4247360 .. 4247373 +  -9.5  -4.37711   TGTTCTGATTAAAAA               GGCGC TTCG GCGCC                TTTTCAGTTTGCTGA  88 33
SH03_RS21145 4250538 .. 4250572 +   -18  -3.39142   TTATCGAATAACACG     TTTGCGCGGCAGGTTA TGC TACCCTGTCGCGCAAA     TTGCTTCACTCTGGA 100 30
SH03_RS21150 NONE
SH03_RS21155 NONE
        hslO 4252590 .. 4252613 + -16.8  -4.12188   TCATTAATGAGTATG          TCCGGCAGAG AGGG CTCTGCCGGA           TTTTACGACTAATAC 100 34
SH03_RS21175 4256418 .. 4256439 +   -13  -4.46835   TTATAGAAAGCAAAA           CGGGAGGC ACCTTC GCCTCCCG            TTTATTTACCCTTCT 100 74
        greB 4259236 .. 4259250 +  -3.5  -4.56775   AGAGTCTTAACCTCC               TGCCG ATGGC TGGCA               TTTTTGCCAGCCAGT  65 44
SH03_RS21195 4261735 .. 4261755 + -15.5  -5.06414   TGCCTGACATAAAAG            TGCCGGAGA ATA TCTCCGGCA            TTTTTATTCCACAGC 100 125
        feoA 4262301 .. 4262313 +  -4.1   -3.1478   GGCCTTATTAGAAGT                GGAAG CGG TTTCC                TGTTAATACGGTGAT  49 7
        feoB 4264650 .. 4264661 +  -5.8  -3.29013   GCACCACCGGTGATT                GCCA TTAA TGGC                 TTCACTTATTCAGGT  57 18
SH03_RS21210 4264920 .. 4264944 + -12.2  -5.08824   CGCCTGTTTTGGAAA         GCCCGGTATGC GTCT GCAT-CCGGGC          TTTTTTGCGTGCGGC 100 52
SH03_RS21215 4265962 .. 4265988 + -10.8  -2.71712   AGAAGAGTTGGCTGC         GGCGAGTCAGTA AAG TTCTGTCTCGCC         ATTTCAAAAGCCACC  76 13
SH03_RS21225 NONE
SH03_RS21230 4268150 .. 4268183 +  -8.7  -2.53581   CCCTCTTTTGTAGAT     TGCCCGATGCGACGC TAAA GCGTCATTTCGGGCC      TACGTTGAACATGTG  65 47
SH03_RS21235 4270014 .. 4270026 +  -3.3  -4.93296   AAGCGTTGCGGAAAG                CTTGC GTC GCCAG                TTTTTATACTGGTAA  74 235
SH03_RS21250 4278018 .. 4278045 +  -3.5  -3.78026   GCACTGACGCGCTTT        TCACCGA-CG ACAAAAAAG CGTTCGGTGA        TATTTTCACTTTCGA  56 324
SH03_RS21265 4282289 .. 4282301 +  -6.9  -5.12068   GCTCCGCCACTTTGC                GGGCG ATG CGCTC                TTTTTCTTCGGTCTG  90 519
        glpD NONE
SH03_RS21325 4297679 .. 4297709 +  -3.1  -3.69323   TGGAACGCAATCATC       CCAACGATGGCAC CGACA GTGCCGAGGATGG       TTTCCATCATGGTCC  51 110
SH03_RS21355 4303564 .. 4303588 + -10.1  -2.90723   TGAAGTAAGATAGTG          CCCTTTTTCTG AGA TGGAAAAAGGG          TGTCATTCAAAATCG  73 33
SH03_RS21360 NONE
SH03_RS21365 4305589 .. 4305602 +  -2.3  -3.05384   GAAAATCATTGATAT               GGCCA TGAA TGGCG                TTGGATGCCGGGCAA  42 230
SH03_RS21370 4306465 .. 4306478 +  -5.3  -2.76322   TTTAGAATTTTACCC               GAATC ATAA GATTC                TGATATCTTAAATAA  50 380
SH03_RS21375 4307430 .. 4307442 +  -2.6  -3.53224   CCAGCCCGTAAACGT                TCGG TACGC CCGG                TTTGGCGGAGAAATC  47 482
SH03_RS21385 4309361 .. 4309392 + -16.6  -4.17556   CAGATGCAATCCACA      CCCCAGCGCAGCAAC TCT GCTGC-GCGCTGGGG      TTTATTGACGGTATA 100 73
SH03_RS21445 NONE
SH03_RS21450 4320458 .. 4320476 + -10.3   -2.5785   ATATTAGCAATTTGG             CGGCAAC CCAAA GTTGCCG             ATTAATGATTACTTC  74 54
        rsmD NONE
SH03_RS21485 4327299 .. 4327309 +  -8.2  -3.61268   GTCTGCTCCATTCCT                 CCGC TTT GCGG                 TTTGAAGCTTGCCTC  69 146
SH03_RS21495 4328318 .. 4328337 + -12.2  -3.01984   TCTGATAAAACTTGA            CTCTGGAG TCGA CTCCAGAG             TGTATCCTTCGGTTA  86 36
        zntA NONE
SH03_RS21510 NONE
SH03_RS21515 4332460 .. 4332487 + -13.4  -5.52384   TTTAAGATGATGAGG        CGGCCTCAGGGA CGTG TTCCGGAGGCCG         TTTTTTTAATCGCCA 100 43
SH03_RS21525 NONE
SH03_RS21530 4335532 .. 4335559 +  -7.1  -3.91984   CAGAACAGGTAATCA        GTATGACGAAT ACTTAA AATCGTCATAC         TTATTTCCGCCATCT  72 71
SH03_RS21535 NONE
SH03_RS21540 NONE
        nikC NONE
        nikD NONE
        nikE NONE
SH03_RS21560 4341049 .. 4341060 +    -3  -3.68064   AAAATCTTCAATTCA                TTGT GACC ACAA                 GTTTTTCTTCGCTTT  51 155
SH03_RS21565 NONE
SH03_RS21570 4345797 .. 4345808 +  -2.2  -3.17763   GATAGAAAAAGATAG                CCTT TATG GAGG                 TTCCTGCAATGTCAA  43 110
SH03_RS21575 NONE
SH03_RS21580 4347561 .. 4347602 + -10.3  -3.81755   CTAAAATTCAATAAA TTGCACCGATGCGTAGTC CCTATAA GCTTACGCATCGG-GCAA TTGTATTTACGCCAT  86 142
SH03_RS21620 4357844 .. 4357871 +  -6.4  -5.07486   ACGTACCGGATAAAA        CCAGCGTTGAC CATTTGC GT-AACGCTGG        TTTTTCTTAGGCATC  84 46
SH03_RS21630 4361263 .. 4361284 + -13.7  -5.66684   TGTAATCAGTCTCGA           GCGGGTCAG TTTA CTGGCCCGC            TTTTTTTATGCGTTA 100 217
SH03_RS21640 4362502 .. 4362519 + -14.1  -4.77757   CGACGTGTTCCTGAA             CGCCCGC ATAT GCGGGCG              TTTTGCTTTTTGGCG 100 52
        tppB 4364278 .. 4364301 + -16.8  -4.67641   TATTCTTGCAGAAAG          CAGGGTAGCG TTAT CGCTACCCTG           TTTTAGTTTTACACT 100 42
SH03_RS21660 NONE
SH03_RS21665 4369590 .. 4369616 +   -16  -3.43217   GCGTTAAATGTTAAA         GGGCTAAGAGTA GTG TGCTCTTAGCCC         TTAATTACGTTTCCG 100 34
SH03_RS21675 4370053 .. 4370067 +  -7.1  -5.47218   CTGGAAAGTAAAAAA               CCGAC GCAAA GTCGG               TTTTTTTACATCCGG  95 159
SH03_RS21680 4370825 .. 4370846 +  -5.9  -4.36914   AAAAATTTAGCTAAA           CACATATGA ATTT TCAGATGTG            TTTTATCCGGGAGGC  70 39
SH03_RS21685 NONE
SH03_RS21690 4372651 .. 4372664 +  -8.1  -3.30124   ATTTATGTCGGATGC               GACGC TGGC GCGTC                TTATCCGACCTACAA  66 84
SH03_RS21695 4374001 .. 4374011 +  -5.4  -4.22748   GAAATTCTTCTCGGC                 TGAC TCA GTCA                 TTTCATTTCTTCATG  65 23
SH03_RS21705 4375647 .. 4375669 +  -2.8  -3.06183   ATAATACCATAATAT           TGATTATTAG CAC TTTATAATCA           TTGAATAAAAATAGA  43 29
SH03_RS21710 4376468 .. 4376498 + -12.7  -2.55015   AATAACACCACCGAA       AGATGCAGATGCT TTCTC AGCATCTGCATCA       TGCATTACATCAAAT  86 36
SH03_RS21715 4377637 .. 4377650 +  -2.3  -2.62184   CAGCAATACGGCTGG               GGTCG AGTC CGACG                TGATCTAAAGACAGC  38 519
SH03_RS21735 4379514 .. 4379548 + -15.9  -3.26545   TACCCCGGTTGTCAC     CCGGATCATAGTCAC TTGAT GTGACTATGATCCGA     TTAATACTCTCTCCG 100 42
SH03_RS21740 4380986 .. 4381004 +  -3.1  -6.02345   AATGCTGGCAGGAAC             TGTTGGC AGAAC GGCAACA             TTTTTTTTGTCGTTG 100 188
SH03_RS21750 NONE
SH03_RS21755 4385469 .. 4385502 + -14.8  -3.78953   GTAACGTGTAAATGA     GAGTAAGGTTGAAC ATGAAG GTTCAGCCTTACTC      TTTCCTGCTAACCAT 100 37
        treF 4393175 .. 4393212 + -12.9  -3.52073   GGCGAACCATAATAT   TTTTACAGCCAGCCG CTAACTTC CTGCTGGCTGTAAAA    TTATCCTCTTCAGGA 100 29
SH03_RS21790 NONE
SH03_RS21795 4396372 .. 4396403 +   -13  -2.78596   CCTGGCTCCCCGTAG      GCCGGATAAGATGC GCCA GCATCGCATCCGGC       TATAATGCGCACATA  91 92
SH03_RS21800 4398189 .. 4398213 + -17.3  -3.45434   TCTAAATCTGTTTAA          TTGCCGGATGT CAG ACATCCGGCAA          TTATCATCACTTCTT 100 176
SH03_RS21815 NONE
SH03_RS21820 4402338 .. 4402373 +  -6.9  -3.26471   CAGCTCATCCATAAA    TACCTGATGGTTGTG CTAACT CATCACCATCAGGCA     TTACTGTGCAGGTGG  61 85
SH03_RS21875 NONE
SH03_RS21880 NONE
SH03_RS21885 4423283 .. 4423324 +   -11  -4.60797   TAGAGTCAAGATTAG CCCCCGTGGTGTTGTCAGGT GCAT ACCTG-CAACG-TGCGGGGG TTTTCTCTCTCCAGC 100 286
SH03_RS21900 4424965 .. 4424983 +  -7.3   -4.4715   AGCTGATTGAGTAAA             CCGGAGC GCATG GCCCCGG             TTTTGTGAGTTAACG  78 27
SH03_RS21925 4429164 .. 4429190 +    -5  -4.81249   TGCAGAATTTTCGTA         GGCCTGATAAGC GGA GCGCATCAGGCA         TTTTTGCCTTTGCCA  74 25
SH03_RS21960 NONE
SH03_RS21965 4437284 .. 4437306 + -11.3  -2.66695   TTACCCGCACAGCCA           TTCCCCAGC CGCGA GCTGGGGAG           ATCTTTGGTCAGCAC  73 88
SH03_RS21975 4440345 .. 4440372 + -14.3  -3.82481   CTGTAATCCCTTTCA        TGCCAGGTGAT GCAGAA ATCACCTGGCA         TTCTTCAGTTTTCCT 100 35
SH03_RS21980 4441428 .. 4441461 + -10.5   -4.2528   AGCCGCGACTGCGTA     GAGTAA-AGCCCGA TAATCGC TCGGGCTTTTACTC     TTTATTGGGTTGCAG 100 40
SH03_RS21990 4442924 .. 4442943 + -13.6  -4.08692   CTTTATTGCTGTTTA            CGGTCCTG ATGA CAGGACCG             TTTTCCAACCGATTA 100 52
SH03_RS21995 4443419 .. 4443438 + -11.4  -6.11392   GCACAGAATCTAAGA            TCCCTGCC ATTT GGCGGGGA             TTTTTTTATTTGTTT 100 54
SH03_RS22005 NONE
SH03_RS22010 4445421 .. 4445438 + -12.7  -3.44848   TTAGCGATAAAAAAA             GCCTGCC AGAT GGCAGGC              TATTTAATAACGGCG 100 268
SH03_RS22030 4450018 .. 4450043 + -11.9  -3.11619   GTGAGTTAAGTAAAA         GCCCGGTCA CATTGGAC TGACCGGGC          TTACGTGAGTTATTC  86 32
        xylF 4455049 .. 4455063 +  -4.2  -3.02144   CGTGTTGAGGCCAAC               GCCC ATAATGC GGGC               TGTTGCCCGGCATCC  46 515
        xylF 4456033 .. 4456061 + -12.4   -4.0641   AGCGAGCTGTAAGCG        TTACGCCCCAGC GCGGA GCGGGGGCGTGA        TTTCTCTCCATGCCG 100 29
SH03_RS22070 NONE
SH03_RS22075 4458824 .. 4458855 + -12.4   -4.7078   TTTGATAAAAATTTT      CTCAAAGCCGGTTA CGTA TTACCGGTTTTGAG       TTTTTGCATGATTCA 100 42
SH03_RS22080 4460119 .. 4460130 +  -7.2  -3.30124   GTGGTTGTCGGATGC                GGCG TGAA CGCC                 TTATCCGACCTACCC  64 81
        malS 4463439 .. 4463449 +  -2.4  -3.18912   GCAACAGTAACTTTT                 CCGG CTT CCCG                 TTCGTCAGTACCTCG  43 31
        avtA NONE
SH03_RS22100 4464982 .. 4465012 +  -9.1  -3.53444   CATAAACAAAGCGCA      C-TGTTCCGGCGTT GAGA AACGCCGGAAAACG       TTTCAAACAGGCTGC  73 11
SH03_RS22115 NONE
SH03_RS22120 4468177 .. 4468203 +  -5.2  -3.29144   TAACTATATTAATAA         TTCAGGTTGC TGCACAT GCGACTTGAA         TTATGACAGACATAG  55 86
SH03_RS22125 NONE
SH03_RS22130 4469965 .. 4469979 +  -2.8  -3.33696   CCGATCTCATCATCC               TCCCTT TGA AATGGA               TTAATTAAAAGGAAA  46 3
SH03_RS22135 NONE
SH03_RS22140 NONE
        sgbH NONE
SH03_RS22150 NONE
        araD 4475088 .. 4475124 + -10.8  -2.79796   CTCATTACGATCAAT    CATCGGGCTGTCGGTA ATCTC TTCCGGCAGCTCGCTG    TATCCTGCGCTCGCC  70 426
SH03_RS22165 4477368 .. 4477379 +  -2.2  -3.01001   TCAAGGTTATATTTT                GCTT CCGC GAGC                 TGTGCTTTCAGGCTG  42 521
SH03_RS22180 4478775 .. 4478786 +  -7.2  -3.30124   GTTTATGCCGGATGC                GGCG TGTA CGCC                 TTATCCGGCCTACGG  64 140
SH03_RS22210 4490224 .. 4490234 +  -3.2  -3.17763   ATAAAAAAAGATAGC                 CCTT GTG GAGG                 TTCCTGCAATGTCAA  46 27
SH03_RS22215 4491077 .. 4491087 +  -3.2  -2.56095   ATTGATAAGCTGAAG                 CGTT CAT AGCG                 TGAGTTGCCTATGCA  42 17
SH03_RS22220 4492014 .. 4492024 +  -6.8   -4.0162   AACATATGGGCCATC                 TGGG CAC CCCA                 TTTCTAATATGCAAG  69 211
SH03_RS22225 4492751 .. 4492768 +  -4.1  -3.97308   CCACCTGTTTATACA             GCATAAC TTTA GGTATGC              TTTCGTGTGTTTCAG  59 232
SH03_RS22230 4493726 .. 4493736 +  -3.2  -5.54192   TATATTAATAACTCA                 CTCT CCA GGAG                 TTTTTTTAACTTAGT  82 62
SH03_RS22245 4498104 .. 4498133 + -14.3  -3.38316   TCGTAAGTAATCCAA       TCCCACCCTCTCC ACAT GGAGAAGGTGGGG        TTAATTGCCTGATGC 100 31
SH03_RS22250 NONE
SH03_RS22255 4500446 .. 4500462 +  -2.9  -3.20494   AATTAATCAACGAAT              TGCGCAG TTT TTGAGCA              TGTTAATGATTACGT  44 408
SH03_RS22265 4501032 .. 4501057 + -14.1  -4.86731   GGATCAACAACCTAA         GGGCAATTCTC TGAT GAGGATTGCCC          TTTTCTTTACCAGAC 100 126
SH03_RS22270 NONE
SH03_RS22275 NONE
        lldD 4505095 .. 4505117 +   -12  -2.79302   CAATTTTCTGCTATC           CTGCCCCC GCACTAA GGGGGCAG           TATGCTAAACATCGT  83 199
SH03_RS22285 4505658 .. 4505675 +  -5.6  -3.18681   CATTAGATCCCATCC             CCATAC TCAAAT GTATGG              TTAATACCGTTGAAA  55 91
SH03_RS22320 NONE
SH03_RS22325 NONE
SH03_RS22330 4513328 .. 4513343 +  -3.4  -4.11235   ACCGACTCACTGACG              TATTAT GCAG ATAATA               TTTATATAATGATTG  58 389
        rfaD NONE
SH03_RS22360 NONE
SH03_RS22365 NONE
SH03_RS22370 4522125 .. 4522152 + -14.4  -2.89921   AAGAATAAACAAGTT        TAAGAAGTGAGT TAAA ACTCACTTCTTA         TCTATACAACTTAAT 100 39
SH03_RS22425 NONE
        coaD 4534211 .. 4534242 +  -7.2  -2.62043   GAAGTTAGCGTAGCG      TTTATGCCGGATGG TATG CCATCCGGCGCGCA       TGAATTACTTCTGGC  58 28
SH03_RS22455 NONE
SH03_RS22460 NONE
        slmA 4538998 .. 4539025 +  -9.8  -4.41348   CAGTTGCAGTAATAT        GACGCCGGATGA CTTT TCATCCGGCGAG         TTTCTTTAAACGCCA 100 29
SH03_RS22480 4541482 .. 4541505 +  -3.1  -5.06414   TTCCGCCTTCACAAA          TGCCGCCACT CAAAC AG-AGCGGCA          TTTTTCTTCCCCGCA  71 63
        dinD 4542680 .. 4542692 +  -4.9  -2.65354   AATAGCGATTTCACA                TAACT ACA AGTTA                TCAATTTCCCCTCCC  48 216
SH03_RS22490 4543416 .. 4543441 + -11.9  -3.89354   CAAAACCTGTGATCT         GCTGGGCAG CCAGCCAA CTGCCCAGC          TTCTTGATTTGCGCA 100 45
         gmk 4545987 .. 4546000 +  -3.1  -3.41913   CATGCCCAGTCATTT               CTTCA CCTG TGGAG                CTTTTTAAGTATGGC  49 56
        rpoZ 4546293 .. 4546303 +  -2.4  -2.83082   CGTCGTTAATCACAA                 AGCG GGT CGCC                 CTTGTATCTGTTTGA  41 32
SH03_RS22510 NONE
SH03_RS22515 NONE
SH03_RS22520 4551335 .. 4551356 + -11.5  -3.21912   GCATTTGTCTTTGTT           GCGGCGGCA CTTC TACCGCCGC            TTCATCGGTTAACCG  84 164
SH03_RS22530 4554321 .. 4554341 +  -2.6  -2.72511   GATTGCGCGTAAATC            GTGCATAA CTCCC TTATGTGC            ATTTCACGGGATGGA  41 105
SH03_RS22535 4556082 .. 4556110 + -14.5  -3.08312   GGTAAACATCAATCT        CGCCGGGTACGAC TCA GACGTACCCGGCA        TTCCATCAATAGATT 100 36
SH03_RS22550 NONE
SH03_RS22555 4560818 .. 4560832 +  -3.6   -5.0133   CGACTGGTACTTATT               TGTAAC TCA GTTATA               TTTTTTCGCCCGGTG  73 367
SH03_RS22560 NONE
SH03_RS22565 4563102 .. 4563114 +  -4.1  -3.91072   CCAGGCACCGCGCCA                CCGTT AAA AATGG                TTTCTGCCGCTTTAG  59 51
SH03_RS22575 NONE
SH03_RS22580 4564446 .. 4564459 +  -2.3  -4.45765   GACCAACGCTTCTTT               ACCTG ATAT CAGGA                TTTCTTCATTTTCAC  60 58
SH03_RS22600 4569907 .. 4569925 +    -3  -3.64812   AAGGTGCCTTTAATA             CCATCGGC AGC GCCAATCG             CTTTTTTAGGTACAA  51 297
SH03_RS22640 NONE
SH03_RS22645 NONE
SH03_RS22650 4577570 .. 4577591 + -17.3  -4.79451   TCAAGTCGCACCAAA           GGGGAGCGG GAAA CCGCTCCCC            TTTTATATTTAGCGT 100 48
        emrD 4579024 .. 4579061 +  -5.6  -3.89346   TAAGCGCACGTCACC   GCAGCATCGTCATC AGCTCCATGG GAGAACGATGCTGC    TTTATCAGATCACGC  63 38
SH03_RS22675 4580817 .. 4580827 +  -5.4  -5.31275   AGCGGGCATTATCGT                 CAGA ACT TCTG                 TTTTTTCTCCTCCAC  84 73
SH03_RS22690 4585137 .. 4585160 +  -3.8  -4.08216   CATCCAGAATAGCTT          TGGCGACCGAG GCG CTCGGTA-CCG          TTTTCGACAACGTAA  60 81
SH03_RS22710 4588609 .. 4588623 +  -3.4   -3.0701   TGGCGTAAGAGAGCG               CCGCCG CAC CGCTGG               TTGGATGAAGATTAT  43 114
SH03_RS22730 4592373 .. 4592406 + -13.1   -4.0098   GTAAAGGTTAAACGT     CGCTGCACGACGCCAC GCG GTGGCG-CGGGCAGGG     TTGTTTCCGTTCCGC 100 433
SH03_RS22740 4594675 .. 4594689 +  -5.6  -4.07568   TGGAGATCAGCAAGC               CGCAGA TAA TCGGCG               TTTTACGCGCAAAGC  65 354
SH03_RS22770 4600000 .. 4600044 +   -10  -3.34013   GCAGTAAACCAATAA TCAGTAAGCGGGCAAAC-GCG TTTA TGCTGTTTGCCCGCCCACAGA TTAATTCAGCACATA  76 26
        dnaA NONE
SH03_RS22800 NONE
        recF NONE
        gyrB 4601573 .. 4601596 -  -3.1  -3.30124   TCGTAGGCCTGATAA          GCGTAGCGCA TCAGG CACGCT-CGC          ATGGTTAGCGCCATT  47 39
SH03_RS22785 NONE
SH03_RS22780 4600936 .. 4600963 -    -4  -4.19258   ACACCCGAGGGAAAA        GGGGGATGCAAC GCGC GTTGCGTGCTCC         CTTTTTGCTTAGCGG  61 34
SH03_RS22775 4599997 .. 4600047 - -16.4  -3.57418   TATGCAGTAAACCAA TAATCAGTAAGCGGGCAAAC-GC GTTTAT GCTGTTTGCCCGCCCACAGATTA ATTCAGCACATACTT 100 23
SH03_RS22765 NONE
SH03_RS22760 NONE
SH03_RS22755 NONE
SH03_RS22750 NONE
SH03_RS22745 4594267 .. 4594288 -  -9.4  -4.87807   GCAAGATAGTAAAAA           GCCGATGC CTGACC GCACCGGC            TTTAAGAAAGTGGAT  95 80
SH03_RS22735 4591877 .. 4591931 -  -9.5  -3.24232   TGTTCCGCAAAGACA GC-TCGGTGCGCTCGCGCGTTGA AAAAAGCGAAG CCAACGCGCAAGC-CACCAATGC GGTTATTCCACCGGC  67 61
SH03_RS22725 4590832 .. 4590861 -  -2.1  -3.25169   CTAAGAAGCGAGTAA       GTACCTGCAAATC CGAA GATTCGCATATGC        TCCCTGACGGCGAGC  45 78
SH03_RS22720 4590338 .. 4590358 - -14.7  -5.82172   AGTAAGACAAAAAAA            GCCCCACCA GAA TGGCGGGGC            AAAGAGAATAGCTAG 100 41
SH03_RS22715 4588475 .. 4588509 - -11.5  -3.10071   AAATGCCAGCGAATA    CCAGGTGGAGT-ACCA TTTA CGGCGACTCCACCCGG     AAAAGAGTTAACCGA  84 33
SH03_RS22705 NONE
SH03_RS22700 NONE
SH03_RS22695 4585042 .. 4585074 - -11.3  -3.90922   AGCCGTGCTAAAGAA      TACGGACCAGCACCC AAC GGATGCCAGTCCACA      CAATTAACGTAACTC 100 205
SH03_RS22685 NONE
SH03_RS22680 4580783 .. 4580809 -  -8.7  -3.64259   AAGCAGCCTGAATAA         TGCCCGCCG GGTGATCAT CAGCGGGCA         TTATCGTCAGAACTT  75 32
SH03_RS22670 NONE
SH03_RS22665 4579501 .. 4579517 -  -2.2  -2.80016   CTTCAGCATCAATGA              CCTGAC TTCCT GTCATG              CGACTCTCTCAATAA  41 21
SH03_RS22660 NONE
SH03_RS22635 4576743 .. 4576767 - -10.7  -4.98531   TGCTTAAACGAAAAA         CCCCGCCCGG TTTGCG CCG-GCGGGG          TTTTGGAATCGTGTG 100 53
SH03_RS22630 NONE
SH03_RS22625 4574658 .. 4574685 -  -7.1  -5.75342   GGCGGGTAAAAAAAA        TACGCGCTTACC TTAAC GATAAGCGCG-A        TGTTGTTCAAGCCTT 100 47
SH03_RS22620 NONE
SH03_RS22615 NONE
SH03_RS22610 4571088 .. 4571110 -  -2.7  -3.55444   GGGTTACTCCTGAAA           TGAATACCT GCGTG AGGCATGCA           TTGTAAAAATCAGCA  48 125
        uhpT 4569644 .. 4569662 - -13.1  -5.95946   GGAATAATAAAAAAA             GCCCGGC GTCAT GCCGGGC             AAAAGTCACCAGTTA 100 44
SH03_RS22595 4566307 .. 4566333 -  -2.4  -2.65264   GCATTATCCAGATCA         TGAGTTCT CCTGCGTAATC AGAACTCA         TGATATCTGGAAACC  40 52
SH03_RS22590 4565850 .. 4565866 -  -2.9  -3.97088   GCTGATAAGACGAAA              CGGTTTC AAT GCAACCA              GTGAACGCCCTCGGC  54 14
        nepI 4564417 .. 4564431 -  -2.8  -3.70773   CCGGATATGTAAGAA               CAGCAA CAA CTACTG               ACCAACGCTTCTTTA  50 48
SH03_RS22570 4562880 .. 4562891 -  -4.4  -3.48438   AAGGAGCACAATTAA                TTGG CGGT CCAA                 AAGCCAGCATTTTGA  53 214
SH03_RS22545 NONE
SH03_RS22540 4556080 .. 4556112 -  -9.7  -2.67021   GCGGTAAACATCAAT      CTCGCCGGGTACGAC TCA GACGTACCCGGCATT      CCATCAATAGATTAC  71 37
SH03_RS22525 4550913 .. 4550932 -   -10  -4.36914   TGCTGCTCTACAAAA            CGCCGCTT TCTA AAACGGCG             CAAATTCGCCTGCAA  90 458
        ligB 4543397 .. 4543407 -  -5.4  -3.33361   CACGAAGGACACTAA                 GGTT CAA AACC                 TGTGATCTGCTGGGC  55 11
         rph 4539713 .. 4539730 - -11.3  -6.06529   TACAGACAAAAAAAA             GGCGACT CATC AGTCGCC              TTAAAAATCAGTTTG 100 33
        pyrE 4539000 .. 4539023 - -16.8  -2.77523   GTTGCAGTAATATGA          CGCCGGATGA CTTT TCATCCGGCG           AGTTTCTTTAAACGC 100 33
SH03_RS22450 4535769 .. 4535782 -  -6.7   -4.2074   TCCCGAACAGACAAA               GATCC CGAA GGATC                GCGCATAGCGGGTTA  71 38
        rpmB NONE
        rpmG 4535104 .. 4535139 - -18.6  -2.90194   ATGGGGGCAAGCAGA    TAACAAAAAACCCCGC CGGA GCGAGGTTTTTTGTTA     CATCAAAGCGAGAAT 100 40
SH03_RS22435 4534176 .. 4534195 -  -7.2  -2.57132   TTCCTGCCGGAGAAT            GTCCATCAG GCG CTGATGG-C            GAAGTTAGCGTAGCG  58 77
SH03_RS22420 NONE
SH03_RS22415 NONE
SH03_RS22410 NONE
SH03_RS22405 4528058 .. 4528070 -  -6.3  -2.50307   GAAACTCTCATTAAT                TGAGT AAA ACTCA                CTGTTTTAACGGTTT  53 40
SH03_RS22400 NONE
SH03_RS22395 NONE
SH03_RS22390 NONE
SH03_RS22385 4524136 .. 4524151 -    -4  -3.04894   AACTCCGCTTAAAAC              TGTCCT GGTG AAGACA               TGTAATTGTGGGATT  47 45
SH03_RS22380 NONE
SH03_RS22375 4522124 .. 4522153 - -10.9  -2.50354   TAAGAATAAACAAGT       TTAAGAAGTGAGT TAAA ACTCACTTCTTAT        CTATACAACTTAATC  76 15
SH03_RS22350 4516656 .. 4516685 - -13.1  -4.99035   GCATTGATATAAAAA       GAAAAAATGATGC CAAA GCATCATTTTTCC        TATCTCAGTTGGTAT 100 70
SH03_RS22345 NONE
         tdh 4514197 .. 4514214 - -12.7  -4.53303   TATCCTCAGATAAAA             GGGCTGG AATA CCAGCCC              TTGTTCGTGTTAATC 100 35
SH03_RS22335 4512757 .. 4512777 -  -8.2  -4.59109   TACACCGCCGAAAAA            CGCTGTGC CTGAT GCACCGCG            TAATCCGTTCCGTGG  88 199
SH03_RS22315 NONE
SH03_RS22310 4508402 .. 4508414 -  -5.5  -4.25283   AGGGCGGCAGCAAAA                TGGAG TGT CCCCA                GAAGCTTATAACAAT  68 99
SH03_RS22305 NONE
SH03_RS22300 NONE
SH03_RS22295 4506494 .. 4506516 - -13.4  -2.90888   ACGATGAGATAATGA           CCGGCCCG TTCTGCG CGGGCCGG           GTCATAGCGGTAACA 100 55
        cysE 4505244 .. 4505263 -  -5.6  -3.40403   TGCCTGGGACGATAA            GCGCCTGCG CCG CGCGGG-GC            TGGACTATCACGAGT  54 407
SH03_RS22260 4500060 .. 4500078 -  -8.2  -4.10855   AAAAGCCTTTCAAAA             GTAAGCAA CGT CTGCTTAC             TGCCCCTCTACCTGC  79 22
SH03_RS22240 4495279 .. 4495294 -    -4  -3.41416   TTAAAACAATCAATA              GATCCA TAAT TAGATC               TCCGGGAACGTGGAA  52 19
SH03_RS22235 4494117 .. 4494129 -  -3.3  -3.30619   AATTAGTCCTTACAA                GGAGC AAA GTTCC                ATAATCTCCCCCCTC  47 45
SH03_RS22205 4485175 .. 4485197 -  -5.5  -3.14463   AACCTGGCTGATCAA           GGCCCTCTC ACACG GAGAAGGGC           GTTTAACATAACCAC  53 81
SH03_RS22200 NONE
SH03_RS22195 4481836 .. 4481862 -  -8.1  -5.13741   TTAATCTAATAAAAA         GCACATTGTAT TCATT AAACAATGTGC         TTTTTTTAAATTCAT  95 86
SH03_RS22190 4480545 .. 4480567 -  -6.2  -4.65838   GAGATAGTTGAAAAA           GCGGCTAACA ATT TGCCAGCCGT           TGTGGAAATGATGAT  77 40
SH03_RS22185 4478825 .. 4478838 -  -8.1   -3.4252   CCGTAGGCATGATAA               GACGC GTAA GCGTC                GCATCAGGCAATGAA  68 66
SH03_RS22175 NONE
SH03_RS22170 4476809 .. 4476861 - -11.4  -2.72043   AATGCTGCGTGAAAT TCGCCACCAGCTTGCTCA-GTCGCAG CAA CTGCGGCCTGAACAAGC-GGCGGAAA GCGAAGATTAATGAT  80 33
SH03_RS22160 4474688 .. 4474725 -  -7.6  -3.15861   TATTACGGGCAGTAA   TCCCTCACGCCGGGGC TTCATC GCCCCGGCACTACGAA    TTGATATGTTCCTTG  63 334
SH03_RS22110 NONE
SH03_RS22105 4464691 .. 4464703 -  -9.1  -3.54741   TATCAGCGCCTGAAA                GCACG CGG CGTGC                TGATGGTGCCGGGGC  71 337
SH03_RS22085 4460215 .. 4460244 - -19.5  -5.07011   GAGACAAAGTAAAAA       GCCTTATCCGACT GACA AGTCGGATAAGGC        TCAAGGAAATGCAAT 100 40
SH03_RS22060 4454417 .. 4454431 -  -6.4  -2.72973   TGAAAAAGGCAGAAT               CTCTCG GCG CGAAAG               TATTTGTACAGTCTG  51 167
SH03_RS22050 4452522 .. 4452550 -  -9.6  -5.40072   CGTTCCTTAAAAAAA       TGCCCGG-TATCG CTAC CGATAACCGGGCC        AACGGACTGCACAGT 100 47
SH03_RS22045 4451016 .. 4451039 -  -8.8  -2.75039   TATAGATGTGAATTA          TCCCCCACCC GGTC AGGCAGGGGA           TAACGTTTACGCCAT  67 32
SH03_RS22040 NONE
SH03_RS22035 4450018 .. 4450043 - -11.9  -4.43477   GTGAGTTAAGTAAAA         GCCCGGTCA CATTGGAC TGACCGGGC          TTACGTGAGTTATTC 100 35
SH03_RS22025 NONE
SH03_RS22020 NONE
        glyS 4445421 .. 4445438 - -12.7  -5.64274   TTAGCGATAAAAAAA             GCCTGCC AGAT GGCAGGC              TATTTAATAACGGCG 100 44
SH03_RS22000 4443549 .. 4443568 - -13.6   -3.3482   CAACGCCGTAAGTAA            GGCGGGAA TAAT TTCCCGCC             GAAGACTCTTACTCT 100 34
SH03_RS21985 4441435 .. 4441453 -  -7.4  -3.83205   ACTGCGTAGAGTAAA             GCCCGA TAATCGC TCGGGC             TTTTACTCTTTATTG  70 35
SH03_RS21970 4436876 .. 4436920 -    -2  -2.85657   TATAAAAGCGAATTA CTGGCGTGACTG-CATTCCGC TGGT GCGGGATGCCTATCTTGCCAA CGCGCAAAACTGGGT  41 295
SH03_RS21955 4435216 .. 4435230 -  -6.4  -4.56775   ATGCCTGGGGAAAAA               CGGCAT GAA ATGCCA               TCAGAACGGAATGAA  74 160
SH03_RS21950 4433826 .. 4433843 -  -8.4  -4.88129   AAAAAGCAGTAAAAA             GGGCCA GTTAAT TGGCCC              AAATTTTACGAGTCA 100 110
SH03_RS21945 4431824 .. 4431834 -  -6.8  -3.13164   GCGCCAATCACCGAA                 TGCG GGG CGCA                 TCTTACTGCGCAGAT  59 104
SH03_RS21940 4431716 .. 4431734 - -14.6   -5.1287   TGCAGATGCAAAAAA             GCCTGCTC GTT GAGCAGGC             TTTTCGAATTTGGTC 100 36
SH03_RS21935 4431009 .. 4431020 -  -4.4  -3.35679   CCTCGTGACCTACAA                TCTG TCAA CAGA                 ATGTGAAAACGTCAA  51 191
SH03_RS21930 4428979 .. 4429009 -  -3.9  -3.86897   TGTATTGCTCACAAA       TCAATTCCCGCCC TTATC GGACAGGGAATGA       AGTATTGCTGCCGGA  58 243
SH03_RS21920 NONE
SH03_RS21915 NONE
        dppD NONE
        dppF 4424965 .. 4424983 -  -9.5  -3.76402   AGCTGATTGAGTAAA             CCGGAGC GCATG GCCCCGG             TTTTGTGAGTTAACG  81 35
SH03_RS21895 NONE
SH03_RS21890 4423033 .. 4423058 -   -14  -5.00339   AGTAAGAACGAAAAA         GGCCGCAGAG TTTCCC CCCTGCGGCC          TGGTCCGGGCGCAAA 100 76
SH03_RS21870 4418269 .. 4418283 -  -4.3  -4.56729   ACGAAAAGACTAAAA               TCACA CGTCT TGTGA               CCTTCTAAATTGATT  66 248
SH03_RS21865 NONE
SH03_RS21860 NONE
        bcsA NONE
SH03_RS21850 NONE
SH03_RS21845 NONE
SH03_RS21840 NONE
SH03_RS21835 4405501 .. 4405522 -  -4.4   -4.7657   CAAAAAGGTTAAAAA           GTTTGAGC TGGCTC GCACAAAC            CAGCACTTTTTAAAG  71 63
SH03_RS21830 4403997 .. 4404025 -   -14  -4.52669   AAGAAGTGAAATAAA        CCTGAACTCACC CAGGT GGTAAGTTCAGG        CACAGGGGTCAATTA 100 91
SH03_RS21825 4402297 .. 4402326 - -11.5  -3.14487   CAGCATATGCAAAAG       GCTGGATAAAGTG TTAC CCCTCTATCCAGC        TCATCCATAAATACC  84 73
SH03_RS21810 4400344 .. 4400359 -  -5.4  -3.09004   CCAGGCGGAAAATGA              GGCAGCT TAT AGC-GCC              AGAACCGCCGTATTC  53 16
SH03_RS21805 4398051 .. 4398075 -  -8.5  -4.32048   TAATAAGAGTGAAAA          GCCTGATGCGC TAC GCTTATCAGGC          CTGAATTTCCATACA  82 170
SH03_RS21785 4393175 .. 4393212 - -12.9  -2.59447   GGCGAACCATAATAT   TTTTACAGCCAGCCG CTAACTTC CTGCTGGCTGTAAAA    TTATCCTCTTCAGGA  91 35
SH03_RS21775 4389686 .. 4389711 - -14.1  -5.08601   TTATCGTAATAAAAA         TCGCCCAAACA TTGC TGTTCGGGCGA          TCAAATTAATTATTG 100 35
SH03_RS21770 4388052 .. 4388090 - -16.1  -3.56142   GCGATTAATAAGCAA   CCGAATGCCCAGCTGTT TTTTT AAAGGCTGGGCATTCGG   TTTTTACAACGTTAT 100 45
SH03_RS21765 4386633 .. 4386648 -  -3.2  -4.62069   TTCTTAGCGCAAAAA              CTGCCA GATT TGGTAG               GACCAAAATTTATCC  65 293
SH03_RS21760 4385469 .. 4385502 - -12.6  -2.92667   GTAACGTGTAAATGA     GAGTAAGGTTGAAC ATGAAG GTTCAGCCTTACTC      TTTCCTGCTAACCAT  93 343
SH03_RS21745 4380366 .. 4380377 -    -3  -3.88618   AAGATAATCACGAAA                TGAT AAAA ATCA                 ATTCCCTGTCAGAGA  55 472
SH03_RS21730 4378254 .. 4378301 - -10.8  -3.00259   TATAGAGATTATATA TGAACAGG-AGGAATAGCTGCTT TTA AAGAAGATATTCCGGCCTGTTCA ATATGCAAGGAAGTA  79 62
        hdeB 4377848 .. 4377878 - -14.8  -4.93595   ATAAAAATGCAAAAA       GGAGCAGCAAGATG GCT CAACTTGCTACTCC       TTTTTACTTGCACCT 100 43
SH03_RS21720 4376975 .. 4376985 -  -5.4  -3.23853   TTCGCGCAAGCAACA                 TCAG GTT CTGA                 GCTGCATTGCGAATC  52 225
SH03_RS21700 4373878 .. 4373892 -   -10  -2.92026   GATTTCAATATGACA               GGACAG AAC CTGTCC               GGGTTCGTTCTAACC  68 245
SH03_RS21670 4369590 .. 4369616 - -13.8  -3.71649   GCGTTAAATGTTAAA         GGGCTAAGAGTA GTG TGCTCTTAGCCC         TTAATTACGTTTCCG 100 44
SH03_RS21655 NONE
SH03_RS21650 4364277 .. 4364302 - -13.3  -3.86346   TTATTCTTGCAGAAA         GCAGGGTAGCG TTAT CGCTACCCTGT          TTTAGTTTTACACTG 100 33
SH03_RS21635 4361090 .. 4361107 -  -8.3  -3.14218   TACGCACCAAAACGA             GCGGGTC AGCT GGCCCGC              TTCAGATTGTGACAT  67 233
SH03_RS21625 4357931 .. 4357944 -  -3.1  -5.37345   GTTAAGTATAAAAAA               CAGCA AAGT TACTG                TTTTTTTCAACCTGT  79 219
SH03_RS21615 4356578 .. 4356592 -  -2.9  -3.00046   TAAAAAACAACAGCA               TAAGA ATTAA TCTTA               GGATAAATTTTTATT  43 134
SH03_RS21610 NONE
SH03_RS21605 4354682 .. 4354718 -  -9.6  -3.60074   GAGAAAGTCCCTAAA    GATTGTAGAGGCGT CATCAGAAC ATGCCTCTACAATC    GATTAAGAAAACCTA  78 89
SH03_RS21600 4352776 .. 4352799 -  -5.3  -4.37658   AACTGGCTGACAAAA          CGGTATCCA TCCTGT TGGATAGCG           TTTCACGCCTGTTCA  68 124
SH03_RS21595 NONE
SH03_RS21590 NONE
SH03_RS21585 4347561 .. 4347602 -  -9.5  -4.32607   CTAAAATTCAATAAA TTGCACCGATGCGTAGTCCC TAT AAGCTTACGCATCGG-GCAA TTGTATTTACGCCAT  88 32
SH03_RS21520 4332206 .. 4332228 -  -7.6  -3.27923   CTGGAAGATCAGCAA           CGTAGCCGCG ATC CGCAGCTGCA           AGTGGTAACCAATAA  62 243
SH03_RS21505 4330586 .. 4330611 -  -8.3  -3.83724   AGGAGATAAGGCAAA         CCGATCGCA ACATTGAG CGCGATCGG          TCCCCTCGCCCCTCT  75 95
SH03_RS21490 4327096 .. 4327134 -  -6.8  -2.62263   ATGGCCCGCAGATGA  CCACCGCCGAAAAGGTA CGGATT TTCCTTTTCGGCG-TGT   TTGAACTGCTGGCCT  52 72
SH03_RS21475 NONE
SH03_RS21470 NONE
        ftsX 4322900 .. 4322949 -  -5.7  -3.68292   ACCGGGAAGAGACAA CGGGGT-CTCTTTCCCTGCTACGG AAC CCATTGCAGGGAAAGAGTATAACA CGCTTTTATTATTCA  61 34
SH03_RS21460 4321818 .. 4321837 -  -7.8  -5.75538   CCCAAAAAACAAAAA            CCCCGGAC TCTC ATCCAGGG             TTCTCTGCTTAATAG 100 47
SH03_RS21455 4320405 .. 4320416 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCATGAAG  64 94
SH03_RS21440 4318352 .. 4318372 - -14.7  -2.73159   GTAACCTTTCTAAAC            CCGCCCGCA TTT TACGGGCGG            TGGGATGATCACTTG 100 34
SH03_RS21435 NONE
        livM 4316126 .. 4316139 -  -3.1  -2.97503   TTAACAGATAATAAT               GGC-TG ACT CATGCC               TGCTCTCCTTTCGCT  44 19
        livG NONE
        livF 4314620 .. 4314635 -    -9  -3.53811   GTCACCTGTCTCAAA              GGAGTC TTTT GACTCC               CTATCAATCAACGTG  73 44
SH03_RS21415 4314457 .. 4314469 -  -4.1  -2.89304   GGGAAAATATAGAAG                GTCTG AAT CAAAC                TCTACAGATTGCTCA  46 46
SH03_RS21410 NONE
SH03_RS21405 NONE
SH03_RS21400 NONE
        ugpC NONE
        ugpQ 4309247 .. 4309280 -  -9.5   -4.0162   GCCGGAGAGGAGAAA     CGGCGACATGCTGAA TCAG CCCAGCACGCCGCAG      CCTGACATTCCGTTG  81 45
         ggt 4306981 .. 4307002 - -14.5  -3.79419   TGCCCTGACAAAATA           GCCCTCTTC CCAC GAAGAGGGC            CGCTAACCTTAGTAC 100 34
SH03_RS21350 4301641 .. 4301656 -  -3.2  -2.94099   GCCTGGGATGATAGA              GGGTGA AAAT TGACCC               CTCTGTTCAAAAAAA  44 67
SH03_RS21345 4300799 .. 4300830 -   -10  -4.10429   AACGACGCGGCAAAA      CCCCGGAAGCGTAC ATCA GCACGCGACCGGAG       CGAGCGAGGAAGCCT  88 75
SH03_RS21340 4299554 .. 4299580 -  -5.2  -5.01845   TACAAGAATTAAAAA         TGTTACGGGTAA CTG TTATCGGTAACA         TTGTCCAGCCGGACA  78 106
        gntK NONE
SH03_RS21330 4297618 .. 4297641 - -10.3  -4.17048   GTTTTTCGAAAAGAA          CCCGGTAGC GTCACA ACTACCGGG           CGAACAAACTTAACT  91 35
SH03_RS21320 4295669 .. 4295686 -  -9.8  -3.15996   TATTACGCACTAACA             GGGGCG GCATCG CGCCCC              AGATTTAATGAATAA  74 44
SH03_RS21315 NONE
SH03_RS21310 NONE
        glgC NONE
        glgA NONE
SH03_RS21295 4286028 .. 4286045 - -10.5  -5.41143   GATGGCGGAAAAAAA             CGGGACC CTTT GGCCCCG              TTCTATTTATTGGTG 100 44
SH03_RS21290 4285512 .. 4285536 -  -8.5  -2.68835   GACAAACACAAAACT          GCCTGATGCGC TAC GCTTATCAGGC          CTACGTGGTTTATGC  63 143
        glpE 4283424 .. 4283441 -  -6.3  -4.01888   AGGGGACAGTATAAA             GCGTTACG CGC CGTA-CGC             CACCTCTGCGGGAAA  67 11
SH03_RS21275 NONE
SH03_RS21270 4281373 .. 4281383 -  -8.2   -3.1855   CGTTTTAACACCGAA                 GCGC GGC GCGC                 CTGGTTGGCTTTTGC  63 419
SH03_RS21260 NONE
SH03_RS21255 4277251 .. 4277273 -  -8.4  -2.76404   CGGACGTAAAAGTGA           CGCCCAGC GCGTGTT GCTGGACG           CATTAAAACTGGCGA  60 514
SH03_RS21245 NONE
        malQ 4269866 .. 4269905 -  -5.7  -2.78018   ATTCGGGATGAATTA  GTAGGCCGGATAAGACGC GTCAA GCATCGCATCCGGCAT-C  AACCGCACTCTACTT  53 35
SH03_RS21220 4265595 .. 4265625 -  -4.6  -3.78775   TGCCTGATGATGAAA       TCATGCAGCACC GACGTAT GGCGCTGCTGGA       GTTAATTCAAAAACA  58 403
        ompR NONE
        envZ 4256418 .. 4256439 - -13.7  -4.65153   TTATAGAAAGCAAAA           CGGGAGGCA CCTT CGCCTCCCG            TTTATTTACCCTTCT 100 31
SH03_RS21170 NONE
SH03_RS21165 4252585 .. 4252619 -  -7.9  -2.79023   CAAGTTCATTAATGA    GTA-TGTCCGGCAGAG AGGG CTCTGCCGGATTTTAC     GACTAATACACCTGA  61 50
        nudE 4247360 .. 4247373 -  -9.5  -4.72272   TGTTCTGATTAAAAA               GGCGC TTCG GCGCC                TTTTCAGTTTGCTGA 100 170
SH03_RS21130 NONE
SH03_RS21125 NONE
SH03_RS21120 NONE
SH03_RS21115 NONE
        hofQ 4241031 .. 4241057 -   -10  -4.05446   TTCGTTAATGATAAA         CCCGCTTCGCTC AGA GAGCGCCGCAGG         ACATGAACTGAAACC  86 362
        aroK NONE
        aroB 4239293 .. 4239311 -   -11  -3.15621   AACCTGAAGCTAATA             GACCGCTT GAT AAGCGGCC             TGACCTTTCTTGTTG  79 41
SH03_RS21095 4237911 .. 4237938 - -14.2  -3.05596   CAGCGCTTCAGGCAA        CTCCCGCAACGA TAAA CCATTGCGGGAG         ATAACCTTGATTACT 100 36
SH03_RS21090 NONE
SH03_RS21085 NONE
SH03_RS21080 NONE
SH03_RS21075 4234399 .. 4234412 -  -9.5  -5.67967   ATGAGGATAAAAAAA               CCGGG TTTC CCCGG                TTTCAGAGTGATGAT 100 176
SH03_RS21070 NONE
SH03_RS21065 4232938 .. 4232955 -  -2.8  -3.90112   GTTCCTTGAATTAAA             TATTCA TTTTTT TGAATA              TTTAGGTTGTGCGAC  52 59
SH03_RS21060 NONE
SH03_RS21055 NONE
SH03_RS21050 NONE
SH03_RS21045 NONE
SH03_RS21040 NONE
SH03_RS21035 4226728 .. 4226764 - -16.6  -3.30124   CCGTAGGCCGGATAA    GATGCGCCAGCATCGC ATCCG GCGATGCTGGCGCGTT    GAATTTTACATCCCG 100 125
SH03_RS20975 4213623 .. 4213644 - -17.3  -3.46602   GCCGGGAGAGCAGAA           GCGCGGGCA AGAT TGCCCGCGC            GAGAAATCATTACGG 100 35
SH03_RS20970 NONE
SH03_RS20965 NONE
SH03_RS20960 4212196 .. 4212206 -  -2.4  -3.03214   ATGGCAATCAGAAAT                 CAGC GAT GCAG                 GAAATTAGCCAGCAG  42 14
        argD 4210837 .. 4210864 -  -8.4  -2.92792   ATGCAGGCTAAACCA        TCGGATAAGGCA TTCA CGCCGCATCCGA         CATCTTTTGCCTGAT  65 50
SH03_RS20935 4207314 .. 4207337 -    -6  -3.79687   ACGCCGGATAAAATA          CTATCCGGCT TCAC AACGGGATAG           TTAAGTCACGCGGCA  63 31
SH03_RS20910 NONE
SH03_RS20905 NONE
SH03_RS20900 NONE
SH03_RS20895 4199800 .. 4199814 - -12.8  -5.42259   TGAGGCGTAAAAAAA               GCGGGG ATT CCCCGC               TTTTTTGTCACTTTT 100 47
SH03_RS20885 4198504 .. 4198525 - -17.3   -5.7946   CCTGTAATAAAAAAA           CCGCCGCCT GGTC AGGCGGCGG            TTCTTAATGCTTATT 100 36
SH03_RS20880 NONE
SH03_RS20875 4197267 .. 4197285 -  -3.8  -3.40403   TTCGTTTCATCAGAA             CTGTACCA CCC TGTCACAG             GTCAGCGAGGCTTCC  49 1
SH03_RS20870 NONE
SH03_RS20865 4196529 .. 4196551 - -12.8   -4.7268   AAACACGTAATAAAA           CGTCCTCACA CAA TATGAGGACG           CCGAATTTTAGGGCG 100 81
SH03_RS20860 NONE
SH03_RS20855 NONE
        fusA 4193278 .. 4193303 - -15.5  -2.78935   ATATTCCTTACTATA         GTGCTCTCCCC TTCA GGAGAGAGCAC          GGGACTTTGGTATTA 100 51
         tuf 4192029 .. 4192044 - -11.8  -4.86939   CAACAAATGCAAAAA              GGGCGC CGAA GCGCCC               TTTTCAATTCAAAAC 100 55
SH03_RS20840 4189022 .. 4189048 - -10.2  -5.20606   AAATATGAATAAAAA         TAATGGGCTACC AAA AGTAGCCCATTG         ACAAAAAATGCGGCG 100 66
SH03_RS20835 4188721 .. 4188734 -  -3.8  -2.79579   AGTCAAAAAACACAC               TCCG TTTATG CGGA                CTCCTTAAACTCCGG  45 17
SH03_RS20830 4188150 .. 4188171 - -13.7  -3.14931   TGGATCTCTTATTAA           CCGGGAGGG TTCT CCCTCCCGA            CACGGCTCAACCTTC 100 32
SH03_RS20765 NONE
SH03_RS20760 4175336 .. 4175350 -  -8.6  -2.52795   AATTCGGCTAACTGA               GGTTCA GAT TGAACC               TGCTGTCAACTACGA  63 112
        rpsJ 4174883 .. 4174897 -  -3.5  -2.72379   TCAATCGCTCAATGA               CCTGA TTAAC CCAGG               CTGATCTGCACGTCT  44 16
SH03_RS20750 NONE
        rplD NONE
        rplW NONE
SH03_RS20735 NONE
SH03_RS20730 NONE
SH03_RS20725 NONE
SH03_RS20720 NONE
SH03_RS20715 NONE
SH03_RS20710 NONE
SH03_RS20705 4170193 .. 4170218 - -14.9    -5.252   TATGGGTAGAAAAAA         TAAACGGCTCA TTTC TGAGCCGTTTA          TTCGTATTGAGAGAG 100 50
SH03_RS20700 NONE
        rplX NONE
SH03_RS20690 NONE
        rpsN NONE
SH03_RS20680 NONE
SH03_RS20675 NONE
SH03_RS20670 4167179 .. 4167189 -  -3.2  -3.32963   ACCTCTACCTTAGAA                 CTGA AGG CCAG                 CTTCACGGGCAGCAT  47 9
SH03_RS20665 NONE
        rpmD NONE
SH03_RS20655 NONE
        secY NONE
SH03_RS20645 4164488 .. 4164517 - -12.3   -4.6645   CACAGACATACAAAA       GATTG-GCTGGCTA ATC TAGCCAGCTCAACC       CAACTTTGCAAGAAA 100 55
SH03_RS20640 NONE
SH03_RS20635 4163631 .. 4163649 -  -4.4  -4.18763   AACAAACCTGGAAAA             CGAGGCGT TAT ACGCGACG             TTTTTTCGGCGGACG  61 14
SH03_RS20630 4162981 .. 4162999 - -10.4  -3.14132   TCTCTTTGGTACTAA             GCTTTACT TGG AGTAAAGC             TCGACGATCAGGTGT  77 10
SH03_RS20625 NONE
        rplQ 4161511 .. 4161524 -  -9.5  -5.61596   ACGGGTATAAAAAAA               CCCGC CGGG GCGGG                TTTTTTTACGTTGCT 100 46
SH03_RS20615 NONE
        zntR NONE
SH03_RS20605 4160343 .. 4160359 -  -5.8  -3.54424   CGTGATTTGCTGAAA              GAGCAG AATAA CCGCTC              TTAACAAGCGCCTGA  59 26
SH03_RS20575 NONE
SH03_RS20570 4153894 .. 4153905 -  -2.2  -3.29511   CTGATTTCGCCATAA                CAAC TTAT GCTG                 AATTAAAGAAATGAT  45 40
SH03_RS20565 NONE
SH03_RS20560 NONE
SH03_RS20555 NONE
SH03_RS20550 4151567 .. 4151580 -  -2.3  -4.77173   GTCCCACAAAATAAA               CGGCT GGAG AGCGG                ATATCTGTATCTCGG  68 140
SH03_RS20540 4149116 .. 4149129 -  -2.3  -2.72471   TTTTCATCAGACAAT               CTGTG TGAG CACTG                CAAAGTACGCTTCTT  40 34
SH03_RS20535 4148990 .. 4149002 -  -6.3  -3.57309   TAAAACCTCTTCAAA                TTTGC CGT GCAAA                TTTGGTAGGCCTGAG  63 28
SH03_RS20530 4148827 .. 4148860 -  -6.7  -4.49756   TTTTAAAGAGCAAAA     CTTCGCAGTGAACCT TTGC AGGTACACTCTGAAG      TATTTTTTATTTAAT  76 52
SH03_RS20525 4145720 .. 4145733 -  -2.4  -2.78679   GGCCGCCAGGCAAAT               TCTG TTTTAT CAGA                CCGCTTCTGCGTTCT  41 84
SH03_RS20520 NONE
SH03_RS20515 NONE
SH03_RS20510 4145302 .. 4145351 - -23.3  -4.09117   TTCACCGACAAACAA CAGATAAAACAAAAGGCCCAGTC TTCC GACTGAGCCTTTTGTTTTATTTG ATGTCTGGCAGTTCC 100 28
SH03_RS20465 4134403 .. 4134417 -  -5.6  -5.21683   AGTGAAAAAAAGAAA               GACCGG CAA CCTGTC               AAAACGAAGCCGGTT  88 340
SH03_RS20405 4126351 .. 4126361 -  -2.4  -3.75024   GGCCATCATTAATAA                 CCAG ATC CAGG                 GTCGCACGCTGGTGA  51 109
SH03_RS20395 4123305 .. 4123328 -  -3.8  -4.14243   TATTCTACGTGAAAA          CGGATTAAAC GGCA GGTTAAACCG           AGTATCTTTGTGAAT  60 18
SH03_RS20385 4121936 .. 4121963 -  -8.4  -2.66316   TCTCGTATCAGACCA        GGCAGGGTAAAC AGAC ACTTCCCCTGCC         TGCATCCGATTACTC  63 35
SH03_RS20380 NONE
SH03_RS20375 NONE
SH03_RS20370 NONE
SH03_RS20365 4118227 .. 4118247 -  -2.4  -2.63208   TGTGACTCAAAAACC            CTTTGCCG GATGG CGGCCCAG            CATCTGTTTACATCA  40 33
SH03_RS20360 4114250 .. 4114299 - -12.1  -3.30124   TTGTAGGCCTGATAA GACGCACAGCGTCGCATCAGGCAA CGG CTGCCGGATGCGGCG-TGAACGCC CTATCCGACCTACGG  89 113
        tldD 4112407 .. 4112420 -  -2.3  -3.86897   GTTACGTTGTACAAA               CCTGT GCCA ACGGG                TTCCCCTCACCCTAA  51 117
SH03_RS20345 NONE
SH03_RS20340 4110133 .. 4110144 -  -2.2  -2.97029   CGTGATTAACCAAAC                TCAC GCAG GCGA                 TGGGCCATTTTACGG  42 4
SH03_RS20335 4108124 .. 4108142 - -11.7  -5.17353   ATAGCCATGAAAAAA             CCGACGC TTTTG GCGTCGG             TTTTGACTTAACTAT 100 33
SH03_RS20330 4107756 .. 4107776 -  -8.1  -2.78384   TCTTGTCCGACGATA            TTGCCCCCG GTT CGGGGGCTT            TTTTTTGCGCTAATG  61 35
SH03_RS20315 4105212 .. 4105243 - -12.5  -4.07568   GTCGTGCGCTCAAAA      CAAAAAACCGGAG TCTGTG CTCCGGTTTTTTA       TTATCCGCTAATCAA 100 41
SH03_RS20295 4100705 .. 4100715 -  -2.6  -3.59814   CCAGCACACAAAAAG                 TTTT GGG AAAA                 AAACTTTCTTGTAAC  50 109
SH03_RS20290 NONE
SH03_RS20285 4099692 .. 4099705 -  -9.5  -5.64274   TTAGCTATAAAAAAA               CCCGC CGAA GCGGG                TTTTTTCGAAAATTG 100 64
        sspA 4098716 .. 4098726 -  -3.2  -2.60797   TCCATACAGATTAAC                 TCCG GCC CAGA                 CGCATTTCACGTTCT  42 10
SH03_RS20275 4098177 .. 4098207 - -12.7  -4.77157   TTAAGTCATTAAAAA       GACAAAACAGGCC GCCTG GGCCTGTTTTGTA       TTACTTCACAACGCG 100 26
SH03_RS20265 4095539 .. 4095554 -  -2.6  -2.91276   GCTTGTCTGATAAAC              GATATA CCTT TATACC               TGTTATACCAGATCA  43 98
SH03_RS20260 4094565 .. 4094614 - -10.9  -2.89683   ATTGTAGGGTACAGA TGCGTTTATTTCCCCTCACCCG GTAGGGG CGAGCGAGGGGAAAC-AACTCA CCCGCGCTCTTGCAT  77 23
SH03_RS20255 4092986 .. 4093005 - -10.7  -2.78679   TTCCCTTAGCGAAAG            GCCCGGT ACATAG ACCGGGC             AACAGGATTAACTTT  77 33
SH03_RS20250 NONE
SH03_RS20245 NONE
SH03_RS20240 4090746 .. 4090758 -  -3.3  -3.32536   AAAGGAGCCGGAGAA                GCGCA TTA TGCTC                TGGCAGGTTTGCCTA  47 210
SH03_RS20220 4087422 .. 4087461 -  -6.2  -4.08394   ACATCTGCCGTAAAA  TCCACGCCTGACGGCTAC GCAC GTAGCCCGATGGCGAGGA   GACTTTGAAACGAAG  69 195
SH03_RS20155 NONE
SH03_RS20150 NONE
SH03_RS20145 NONE
SH03_RS20140 NONE
SH03_RS20135 4075158 .. 4075182 -  -7.2  -5.05712   ATAAATAAGCAAAAA         GCCTCG-CTGA TAAA TCAGACAAGGC          TCGACTTGCAGGCAG  89 85
SH03_RS20130 NONE
SH03_RS20125 4073429 .. 4073441 -  -4.8  -3.52102   AGTTTATCGACAGAA                CGCA GTTGA TGCG                TAGCTACACTAAACC  53 98
        rplU NONE
        rpmA 4071091 .. 4071112 - -15.9  -4.75174   TATCGAATGTAAAAA           GCCCCGCAA CGTG TTGCGGGGC            TTTCATCCGTTACCG 100 54
SH03_RS20100 NONE
        obgE 4068683 .. 4068709 - -15.9  -4.71382   ACAATTAGTCAAAAA         GAAACCCCGGC ACATG GCCGGGGCTTC         AGATTATTGACAAAG 100 177
        greA 4066455 .. 4066469 - -12.8  -4.36914   TGTTCGTTGATAAAA               GGCCGC ATA GCGGCC               TTTTTCCTTTCTTTA 100 74
        rrmJ 4065245 .. 4065259 -  -2.8  -3.40899   AACCTCTTATTACAA               CTGTGT TAA AAACAG               CGTCAGGATACTCTA  48 80
        hflB 4063225 .. 4063244 - -12.8  -5.56673   ATTGATAAGAAAAAA            CCCCGGAG CACG CCCCGGGG             TTTTCGGTACAAATA 100 61
        folP NONE
        glmM 4060973 .. 4060985 -  -9.1  -5.24129   TTCGCTGAGAAAAAA                GGCGA CAA TCGCC                GCCTTTTTAGCCAGT 100 52
        secG NONE
SH03_RS20050 4060313 .. 4060344 -   -11  -4.32436   AGACCAGGACCAAAA      CGAAAAAAGACGCT TTTC AGCGTCTCTTTTCT       GGAATTTGGTACCGA 100 32
SH03_RS20045 4058089 .. 4058108 -  -2.1  -4.68593   CTGACGATGGAAAAA            GGCGA CTCGGTGTTC TCGCC             AGATGATCGTATTGG  66 184
SH03_RS20035 4056351 .. 4056366 - -10.4  -5.60689   TCAGATAACAAAAAA              CCCCGA TAAA TCGGGG               CTTTATATAACTGAA 100 151
SH03_RS20030 4055841 .. 4055857 -  -6.5  -2.51207   CAGACTATTAAAAGT              GGGGAAC CAG GTTCGCC              TTCTGGATATTACTC  53 1
        nusA NONE
        infB 4051480 .. 4051494 - -11.4  -5.24129   TCTCCTGACAAAAAA               GGGGCT GTT AGCCCC               TTTTTAAAATTAATT 100 152
        rbfA NONE
        truB 4050049 .. 4050063 -  -2.8  -3.95071   CAAAGTGTTAAACAA               TTTACG CGA CGTTAA               GCGGCAGTATTCTAC  54 74
SH03_RS20005 4049656 .. 4049672 - -10.8  -5.03314   GTCAGCTTGAAAAAA              GGGGCC ACTCA GGCCCC              CTTTTCTGAAACTCG 100 47
SH03_RS20000 4047279 .. 4047300 - -15.1  -4.07568   CCTGCCCGGTTAAAA           GCCCCCCGC CGCA GCGGAGGGC            AAATGGCAACCTTAC 100 37
SH03_RS19995 4046259 .. 4046284 -  -7.5  -4.04023   ATTAACGAACAACAA         CGCCCTCACCC GTTA AGGTGATGGCA          ATCAAAAAAGATTAC  72 60
SH03_RS19990 4044184 .. 4044206 - -10.6  -5.82281   AAAGACAGAAAAAAA           GCCCCGAT GGTAAAA ATCGGGGC           TGTATATATTATTTT 100 69
SH03_RS19980 4042788 .. 4042810 -  -8.4  -2.98823   GCTGTCCTACATAGA           CCTGATAAGC GAA GCGCATCAGG           CATTGTGTAGGCAGC  65 67
SH03_RS19960 NONE
SH03_RS19955 4038380 .. 4038404 -  -2.1  -3.60151   CGCGGGAAAGGAGAA         CTAACGCTGG TGTTTT CC-GCGCCAG          TGGGCGATCGTTCGC  49 155
SH03_RS19945 4037697 .. 4037713 - -10.1  -2.70946   GTGGTTGATAAAGAT              CAGCTGG TTA CCAGCCG              GACACCGGACGATCT  67 63
SH03_RS19935 4036422 .. 4036432 -  -5.4  -2.65264   TGACCAGTCATAGCA                 TTCC CCA GGAA                 TAAGTTATGATAATT  49 83
SH03_RS19930 4035341 .. 4035352 -  -7.2  -3.50393   CCGTAGGTCAGATAA                GGCG TTTA CGCC                 GCATCCGACATGTTT  66 50
SH03_RS19905 4030714 .. 4030746 - -11.5  -4.07885   CATCGTGCGGTAAAA     GAAGACGTTGCGTT TTGATT AACGCAACG-CTTC      GGCACTGTTACCCCT 100 33
SH03_RS19830 4016022 .. 4016033 -  -5.8   -4.7416   GCAAAATGTTAAAAA                GAGG ACAT CCTC                 CTGCCGACTGGGAAA  81 127
SH03_RS19810 NONE
SH03_RS19805 NONE
        garR 4010072 .. 4010083 -  -7.2  -2.66316   CCTGTTACCACATGA                CGCC GGAG GGCG                 TTTCTCTTATTCGGC  58 88
SH03_RS19795 4008460 .. 4008487 -   -15  -4.07568   TCTGCCCCTCCAAAA        GCAAAAACCCGC CGAA GCGGGTTTTTAC         GTAAATCAGGTGAAA 100 442
SH03_RS19775 4004336 .. 4004356 -  -2.5  -3.54146   CGCCTGAATTAAATA            TGTAGGTAA CCG TAACCGACA            CCTGCAAGACAGACA  48 75
SH03_RS19770 NONE
SH03_RS19765 NONE
SH03_RS19760 NONE
SH03_RS19755 4000033 .. 4000044 -  -2.2   -2.7186   AAATGCCTTGAATCA                GCCT ATTT AGAC                 CGTTTCTTCGCCATT  40 61
SH03_RS22885 NONE
SH03_RS19745 NONE
SH03_RS19740 3996760 .. 3996794 - -11.5  -3.05384   TTGCCGTTCAGTGAA    GTGGAGCGGAACGACC TTAC GACCGTCCCGCTC-AC     GAGGCTTTACGCACT  83 32
SH03_RS19735 3995323 .. 3995340 - -11.3  -6.00086   AGATCACAAAAAAAA             GGTGCAC ATTT GTGCACC              CAAGGATGAAAGCTG 100 50
SH03_RS19730 3993740 .. 3993754 -  -2.8  -4.90217   CAAACATATTAAAAA               CCTTAA AAT TTCAGG               TAAATCAAGAAAATG  67 30
SH03_RS19725 3992146 .. 3992174 -  -2.3  -4.61527   AAAATTGGCCAAAAA       GCGCCAGC-CGG TGAAGC CCGTGGTGGCGA        AAGAACCTGCTCGCA  66 272
SH03_RS19710 3990357 .. 3990376 -  -9.2  -2.62425   AATTAATCTTAGAAT            TGGGGCGA TATT TCGCCCCT             TTTTATTAACAATAA  68 47
SH03_RS19645 NONE
SH03_RS19640 3978856 .. 3978880 - -12.9  -4.21922   GTATGGAAAAGCAAA          CGGCGCTTCAC ATT ATGAAACGCCG          TTTTTTATTAACAAC 100 52
SH03_RS19635 3978252 .. 3978262 -  -2.4  -3.34517   ATCGTCTGGCAAATA                 GCGC CCT GCGT                 AATTAATTGTTTAAC  45 36
SH03_RS19605 3971773 .. 3971804 - -12.2  -2.52795   AACGTGCTGAACGTA      GGCCGGATAAGGCG TTTA CGCCGCATCCGGCA       GGTAACTCCCAATCT  81 40
SH03_RS19600 NONE
SH03_RS19595 NONE
SH03_RS19590 3970634 .. 3970649 -  -4.6  -3.76641   AGGGCAAGAGCCAAA              CCGCGC GCTG GCGCAA               CCGCTGATTGATAGC  58 184
SH03_RS19550 3957961 .. 3957989 - -14.7   -3.9344   AAGCGTAATATCAAA        TCGGATGGCGA TACGACG TCGCCATCCGA        TCTTTTTATACGACG 100 31
SH03_RS19540 3954431 .. 3954446 -  -3.3  -5.72622   TGCACAAATAAAAAA              GATCA TTGCGG TGATC               GACCGCGCCGCTTTT 100 215
SH03_RS19530 3952765 .. 3952786 - -14.5  -3.91597   ACCAGATATAGCAAA           GGCTGACGA GAAA TCGTCAGCC            TTTTTCTTTTTATAT 100 46
SH03_RS19520 3952024 .. 3952042 - -11.7  -3.85698   GGCCCTCTGCACAAA             CGCCACC TTTTC GGTGGCG             TTTTTTATCGCCCAC  95 30
SH03_RS19500 3946423 .. 3946433 -  -2.4  -2.85668   CATTCTTACACCATA                 CGCC ACC GGCC                 CCAGTCCGATTTACT  41 202
SH03_RS19480 3942094 .. 3942106 -  -3.3  -3.22909   TTAAAGGAGGAAAAG                GCGTT GCT ACCGC                TTTTGGTGCCATCGC  45 324
        folB NONE
SH03_RS19465 3940286 .. 3940299 -  -8.1  -3.30124   TTGTAGGCCTGATAA               GACGC GCAA GCGTC                GCATCAGGCGTTGAT  66 117
SH03_RS19450 NONE
SH03_RS19445 NONE
SH03_RS19440 NONE
SH03_RS19435 3932183 .. 3932202 - -11.4  -3.71649   GGCTGAAACGGGAAA            GCCCCTCC CGAA GAAGGGGC             CTTGTATAAGGAAAG  88 224
SH03_RS19410 3928799 .. 3928814 - -11.8   -4.5394   ATACAAACACTAAAA              CGGGCC ATCA GGCCCG               TTATATCAGTGCTCT 100 31
        ribB 3920837 .. 3920858 -  -5.9  -5.63236   AGGGAAAAATAAAAA           CCGAAGCCTG CTA CAA-CTTCGG           TTTCTTGATTAAGGC  95 61
SH03_RS19365 3920411 .. 3920447 -   -11  -4.40963   ATTGGTTAAAAACAA    CATCAGAAGTTGTCCA GCGCA TGGACAACTTCTGCCA    GCTTCACGAAAGCCT 100 40
SH03_RS19355 3918672 .. 3918693 - -15.9  -2.84619   GAATAAGCCACGATA           CCGGATGGC ACTC GCCATCCGG            TAATTGTTAGCCTAT 100 32
        nudF NONE
SH03_RS19325 NONE
SH03_RS19320 3913087 .. 3913101 -  -2.8  -2.93769   AAAGAAGCGTAGACA               TCAGTA GCC TTCTGA               AGCGGTATCAGGTTG  43 11
SH03_RS19315 3912513 .. 3912524 -  -4.4  -2.88544   GTTGATCGTCAGAGA                TGGT GCAG ACCA                 AGAAAATCGACGATC  46 7
SH03_RS19310 3910075 .. 3910086 -  -2.2  -4.13995   GTTCCATAAAGCAAA                CCAA TTCC TCGG                 TATGGAACCGCTGCC  56 524
SH03_RS19295 3908796 .. 3908811 -  -6.8  -3.87815   GCCCACCCGGACAAA              CCGCTA CCGG CAGCGG               GCTTGGGCTATCGAT  68 174
SH03_RS19280 3906333 .. 3906355 -  -9.1  -2.90496   CTCCCTGCGAAATTA           TTCCCGGGA ACGCG TCCCGGGAG           CGGTAACAATTACGG  68 35
SH03_RS19275 3905770 .. 3905790 -  -3.9  -4.41114   TGACCATATAAGAAA            GTGGCGC ATTAGTA GCGCCAG            TTTGAAGCAGGAATT  65 65
SH03_RS19270 NONE
SH03_RS19265 3904906 .. 3904920 -  -4.9  -5.63517   CCGGTAAAGAAAAAA               GCGAG TTGCC CCCGC               TTTTCCATTAATTAA  91 37
SH03_RS19260 3903157 .. 3903183 - -11.5  -3.10732   AGATCAACGTGAATA         GCGCCGCCGGA CGTGC TCCGACGGCGA         TAAAGGCATCAATGT  84 34
SH03_RS19255 3900567 .. 3900585 -  -5.2   -3.3251   ATATATAGCATAACA             CCCTCTGA AGG TCTGAGAG             ACTGGCATTGTACGT  55 236
SH03_RS19250 3899783 .. 3899809 -  -2.2  -3.33151   CTGGCTAAAGTAATA         CCGTGCAGGAAA GTG TTCCCCGCAAAA         ATACAGATTGCCGAC  45 41
SH03_RS19245 3898304 .. 3898336 - -12.8   -2.6993   AGAAATCGAAAGGTA      TTCCATACTCGCCC TCCTC GGGCGAGTATGAAG      ATTACGGTACCGGAT  91 27
SH03_RS19240 3895974 .. 3896001 -  -6.9  -5.73339   AGAATGATAAAAAAA        TCCCCGGTAGC GTGTCA GTTGCCGGGGA         TATTTTTTAACGTCC 100 32
SH03_RS19215 NONE
SH03_RS19210 3891201 .. 3891220 -  -2.1  -3.16288   TAAACGCCATGAAGA            TCAGGTA ATGACG TTCCTGA             TGATCCTGCCAATTG  43 148
SH03_RS19195 NONE
SH03_RS19190 NONE
SH03_RS19185 3887633 .. 3887659 - -13.8  -5.44119   TTTAGGTTAAAAAAA         TGCCCGGTTG TGAAAAG CAACCGGGCA         TCATTGTGAATTCAC 100 265
SH03_RS19175 3886030 .. 3886050 - -15.4  -3.62775   ATGACCTGTTAATAA            CGGGCGCG CGAAC CGCGCCCG            AATCAGATCAGTGAT 100 33
SH03_RS19165 3883927 .. 3883938 -    -3  -3.04322   CGTAATCCCGTAAGA                GATA AACC TATC                 AGGAGAGATATTTAT  44 24
SH03_RS19160 3883535 .. 3883549 -  -2.8  -3.14931   CGTATGTTTGATCAA               TTTTCG AGG CGATAA               CCGGCCATAAAAAAG  44 7
SH03_RS19155 NONE
SH03_RS19150 NONE
SH03_RS19145 NONE
SH03_RS19140 NONE
SH03_RS19135 NONE
        hybD NONE
SH03_RS19125 NONE
        hypA NONE
SH03_RS19115 3876749 .. 3876780 -   -13  -2.58579   GCAATCGTGCACAAT      GCCTGATGCGACGC TGCC GCGTCTTATCAGGC       CTACGAAAGCTAATC  91 42
SH03_RS19105 3873693 .. 3873729 - -16.8  -3.16668   GAATATTTTGATTAA    TCCCCGTACTGATTAT TCTTC ATAATCAGTACGGGGT    TGCTACAACATGTAT 100 40
SH03_RS19100 3871912 .. 3871946 - -13.7  -4.68994   ATCACTAGTCAAAAA     TGGAAATGCCCGATC GCCAG GACCGGGCATTTTCA     GGAAGGTTAAATCAA 100 32
SH03_RS19090 NONE
SH03_RS19085 NONE
SH03_RS19080 3868376 .. 3868386 -  -5.4  -4.22748   CATGAAGAAATGAAA                 TGAC TGA GTCA                 GCCGAGAAGAATTTC  65 61
SH03_RS19070 3865973 .. 3866001 -  -2.9  -3.35679   TGCGCGGATCTACAA        CGCGGTGTTGCAG CGG CTGCCGCACGTCG        CCCAGCGCGCAGCAC  47 148
SH03_RS19060 NONE
        glcE NONE
        glcF NONE
SH03_RS19045 NONE
SH03_RS19040 3858676 .. 3858701 - -12.6  -2.83164   GCAGTTACTATCATA         GCCCCGACAA TAAAAC TTGCCGGGGC          TTTTTTGACGCTATT  89 39
SH03_RS19035 3856642 .. 3856668 - -12.4  -3.58779   AATAATGTAAATGAA         GCCGGATGAT ATTAACG ATCATCCGGC         TTTATTGATTTACGA 100 35
SH03_RS19025 3851550 .. 3851583 - -13.1   -2.8294   TAGGCCCGATAAGCA     GGCGCATCGGGCAAA TGTG TTAACCCGGTGCGCC      TTATTTCATGCCGGA  91 73
SH03_RS19020 3850597 .. 3850613 -    -3  -3.18144   AATAAGAGTTAAAAT              GTCACT TTGAT AATGAC              GTGGTTATCATTAAA  46 36
SH03_RS19015 NONE
SH03_RS19010 NONE
SH03_RS19005 NONE
SH03_RS19000 3847537 .. 3847553 - -11.5  -3.65581   ACTAATTCTTAAGAA              CCCGCCC ACA AGGCGGG              TTTTTGCTTTTGGAT  90 143
SH03_RS18985 3844067 .. 3844088 - -11.5  -5.30616   TTACGCAAAGAAAAA           CGGGTCGCC AGAA GGTGACCCG            TTTTTTTTATTCTTA 100 38
        trmB NONE
SH03_RS18955 NONE
SH03_RS18950 3838725 .. 3838748 -  -8.8   -5.4505   TCCCTCAAGAAAAAA          TCAGGCCAGC ATTT GCTGGCCCCA           GATTGATAACAAAGT 100 2
SH03_RS18945 3837947 .. 3837969 -  -9.2  -4.12315   AAACGAAGAATTAAA           CGGCATAAAA AAG TATTATGCCG           TCTTAAAATAGAGGA  85 41
        ansB 3836735 .. 3836755 - -14.7  -4.74103   GTCTGAAGTGAAAAA            GCCCCGGCA CGA TACCGGGGC            GAGGCGATTAGTACT 100 33
SH03_RS18935 3835198 .. 3835210 -  -6.2  -4.30576   TGCGTACCACCAAAA                CGCG TCATC CGCG                TGGTTTTATGCAAGG  72 454
SH03_RS18905 3830935 .. 3830952 -  -7.7  -4.15044   CGGGCGCTCAACAAA             GGCAAAG TTGA CTCTGCC              TCTGCGGTTATTATT  76 254
SH03_RS18860 3823192 .. 3823209 -  -8.5  -4.52703   GAAACCACGAGAAAA             CTCTTGT TTTT ACAAGAG              CGCCCTTGTTCAGTC  87 296
SH03_RS18850 NONE
SH03_RS18845 3820914 .. 3820946 - -14.9  -5.71712   GTCGATATAAAAAAA      CCCTTCCGCGTCG TTAGGCC CGACGAGGAAGGG      TTGGATTTGTCACAA 100 95
SH03_RS18840 3819887 .. 3819918 - -10.8  -2.52464   CGGGTGCCGAACGTA      GGTCGGATAAGGCG TTCA CGCCGCATCCGACA       TTAATGGCACGTTTT  76 65
SH03_RS18830 3816690 .. 3816705 - -10.4   -5.5074   CAAGGTAATAAAAAA              GGTCGC CGAA GCGACC               TTTTTACCCGAAATG 100 45
        cmtB 3815968 .. 3815984 -  -3.7  -3.34534   TAGAGGAGAGAGTAA              TTATCCG CGG CTGATAA              TGTCCGCTAATTGTT  49 9
SH03_RS18820 NONE
SH03_RS18815 3813244 .. 3813272 -    -8  -2.97489   GTAACGCGAAATAAT        GGCCACGCCAGG GACAT CATTGCGCGGCC        TCCCCGATATCAACG  62 13
SH03_RS18810 NONE
SH03_RS18805 NONE
SH03_RS18800 3810842 .. 3810871 -  -3.5  -3.53343   AATCGTCCGGGGAAA       CCTTACCTGTCGCA AAC TGCGACTGATT-GG       TTAATTGTCGAACAT  51 211
        gapA NONE
SH03_RS18790 3808513 .. 3808530 - -12.7  -3.90922   AGCGCGCTGAAACAA             GGGCAGG TTTC CCTGCCC              TGTGATTTTTTACTT 100 35
SH03_RS18785 3807205 .. 3807221 - -11.5  -5.40072   TTTTGGCGAAAAAAA              GACCCGC AGA GCGGGCC              TTGAGATAAGCAGAA 100 50
SH03_RS18780 3805994 .. 3806019 - -11.9  -3.33839   AAAACTAATAAGAGA         GAGGCCAGAGA GTAT TATCTGGCCTC          AGCGTTGATTACGCA  89 34
SH03_RS18775 NONE
SH03_RS18770 3804390 .. 3804415 - -13.3  -2.64472   TATCGGGTAAAGGCA         TTAGCCCGACG AATA CGTCGGGCTAC          AAATATTATTGTGCT  93 31
SH03_RS18765 3803274 .. 3803286 -  -3.3  -4.11216   TCGCTATCTGGAAAA                TGCGC CTG GCGGA                CATATTCACCACGAT  58 97
SH03_RS18735 NONE
SH03_RS18730 3795558 .. 3795576 -  -3.2  -5.27399   CAACATATCAAAAAA             TAATATTG CGG CAATATGA             ACGTTTGCGTCGCGA  79 196
SH03_RS18725 3794215 .. 3794237 - -15.6  -5.66684   GAAGGGATAAAAAAA           CGGGCAAGTC AGT GACCTGCCCG           TTGATTTTCAGAGAA 100 47
SH03_RS18710 NONE
SH03_RS18705 NONE
SH03_RS18700 3789416 .. 3789428 -  -3.3  -3.05597   TTTATTCCTTAAAAC                CGCCT TCA ACGCG                CCACCCAACCGAGGG  44 18
SH03_RS18695 3788129 .. 3788152 - -10.3  -4.39386   TTCAAATGAGGAAAA          TCTCCCGGC GAAAAA ACCGGGAGA           TGAAAGTGTGATGGG 100 69
        gcvT 3786657 .. 3786677 -  -8.9  -3.16667   CAAAAAAGTAAATCA            CGCGACGGC TTT GCCGTTACG            CACAAAAACAGGTTT  69 2
SH03_RS18685 3786175 .. 3786216 -    -8  -3.14132   CTCTCTCCTTACGAA GAGAGTGAGGGTGAGGCA TAAATT TTCCTCACCCTGATCCTC  TCCCGCAGAAGAGGA  63 50
SH03_RS18680 3783210 .. 3783223 -  -9.5   -4.7373   TCATCTGACTAAAAA               GGCGC CGAA GCGCC                TTTAGAAAATAGTCG 100 51
SH03_RS18675 3782195 .. 3782220 - -13.4  -2.79023   TAAGTCGATGAAGTA         CCGGATGCAA TACTTG TTGCATCCGG          TCAGACAACTTCCCT  93 44
SH03_RS18665 3780288 .. 3780299 -  -4.4    -3.281   GCGTAACTGAGAATA                GTTC CAGT GAAC                 ACCTGTTAGCTAAAA  51 119
SH03_RS18660 3779486 .. 3779497 -  -7.2  -3.34962   CCGTAGATCGGATAA                GGCG TTCA CGCC                 GAATCCGGCAGTTGT  64 98
SH03_RS18650 NONE
SH03_RS18645 3777118 .. 3777130 -  -4.8  -2.72144   GGATTTTGGTGAAAT                CCAG GAAGA CTGG                GAAGCCGTCTGGGAT  46 392
        xerD 3775928 .. 3775943 -    -4  -2.87132   CGTTCTTTTCAGACA              TCACGCC CGC GG-GTGA              TGCTGTTGATGAAGT  46 10
SH03_RS18630 NONE
SH03_RS18625 3773406 .. 3773432 - -11.7  -3.30903   AAAATGCGGTGATAA        GAGCG-GGATTG TACC CAATCCACGCTC         TTTTTTATAGAGAAG  86 47
SH03_RS18620 NONE
        lysS 3770700 .. 3770717 - -10.5  -5.95539   GCTTAAATAAAAAAA             CCCCGAC ATTT GCCGGGG              TTGTGAGCATAACGT 100 46
SH03_RS18590 NONE
SH03_RS18585 3765574 .. 3765599 - -11.1   -3.1352   GGGCAATCTAATAGA         TTCTCCGCGCC TTTC AGCGCGGAGAT          TTCTTTCAGAGAGGA  79 31
SH03_RS18540 3751350 .. 3751364 -  -9.2  -3.14683   ATATCCTTTCAGTAA               CCCGGA ATA CCCGGG               CCGCTAATTCACAAA  72 29
SH03_RS18535 3749481 .. 3749506 - -11.8  -3.78329   TGTCAGTAATTTAAA         GGCCGGGTGG GTAATA CCATCCGGCC          AAAGATTGTCAAGTA 100 214
SH03_RS18505 3741052 .. 3741083 - -10.8   -4.5528   GAAAACGAAGTAAAA      GGATATCCGGCCTG AATT CAGGCCGGATTCAC       TGAGGTTATGTGTTT 100 31
SH03_RS18485 NONE
SH03_RS18480 NONE
SH03_RS18475 NONE
SH03_RS18470 3734721 .. 3734740 -    -8   -2.5076   AACTAGTATTAAGAC            TATCACTT ATTT AAGTGATA             TTGGTTGTCTGGAGA  60 55
SH03_RS18465 NONE
SH03_RS18460 3733391 .. 3733401 -  -3.2  -4.36914   CCTTTCTCGATAAAA                 GTGA CAA CCAC                 TGAGTAAACAGATCA  61 77
SH03_RS18455 NONE
SH03_RS18450 NONE
SH03_RS18445 3732313 .. 3732323 -  -3.2  -5.40072   TTTTGCGTAAAAAAA                 TACC ACA GGCA                 TTAAAAAATCATGAG  79 97
SH03_RS18440 NONE
SH03_RS18435 3731035 .. 3731048 -  -3.9  -4.25283   ATGCGCTCACCAAAA               GTTAA ATTC TTAAC                CATCTTCACGTTTTG  63 518
SH03_RS18405 3726851 .. 3726861 -  -5.4  -3.82205   GTAACAGAGCAATAA                 TGCA TTG TGCA                 AGGTAAACTAAAATA  61 180
SH03_RS18380 3721318 .. 3721332 -  -3.6   -4.8622   GTTTTCAATTAAAAA               TAAAAC AAT GTTTCA               TTTTTAAGTTAAGGA  70 185
SH03_RS18375 NONE
SH03_RS18370 3719538 .. 3719555 - -12.7  -5.29782   TACAGGTATAAAAAA             CCCTGCC ATGC GGCAGGG              TCATAAAAGTAAGAA 100 48
SH03_RS18365 3717812 .. 3717838 - -18.8  -5.30155   CTATTAACGAAAAAA         GGGCCGGATGTA CAG CACATCCGGCCC         GTGAAATCAGACGCC 100 32
SH03_RS18360 3716773 .. 3716801 -  -3.7  -2.93869   CATGATCGTAGAAAC        CCACAGCGCCG CGTCAGT CTGCGCAATGG        TACGGGCGGGGGTAG  45 248
SH03_RS18350 3714704 .. 3714715 -  -3.6  -2.76263   GTCATCATGCAACCA                GCGA CTAA CCGC                 AGTTAAAGCAATTCC  45 28
SH03_RS18340 NONE
SH03_RS18335 3709721 .. 3709746 - -16.3  -3.27475   TCCGGCACCATAAGA         TTAACGCCGGT TAAA ACCGGCGTTAA          ATATTAATGACGGCG 100 29
SH03_RS18300 NONE
SH03_RS18295 3703169 .. 3703179 -  -6.8  -3.68506   GAACAGCGATTGAAA                 TGCG CGC CGCA                 GGTTTCAGGCGCTCC  65 115
SH03_RS18290 NONE
SH03_RS18285 3701401 .. 3701420 - -10.7  -5.44119   CGGAGGGTAAAAAAA            CCGACGC ACACTG GCGTCGG             CTCTGGCAGGATGTT 100 47
SH03_RS18280 NONE
SH03_RS18275 NONE
SH03_RS18270 NONE
SH03_RS18265 NONE
        recC 3696076 .. 3696094 -  -7.4  -2.69471   CTATGTTTATATAAC             CATCAGTC CGT GACTGGTG             CGCATCATAAAGTAA  58 72
SH03_RS18255 NONE
        recB NONE
        recD 3687665 .. 3687709 - -12.9  -4.30978   GGTAAGCGATGAAAA TCGTCGGATGCGACATGCG TAACACT CGTACGTCGCATCCGGCAA TTACGTTTATTCCCG 100 32
        amiC 3684817 .. 3684830 -  -5.9  -5.24129   GTCTCCCATAAAAAA               GCGCC ATTC AGCGC                CTTTTTATCATCCCC  85 33
        mltA 3682943 .. 3682963 - -10.4  -4.93365   CCTCAGAATTAAAAA            GGGCGAGG TTATC CCTCACCC            TAAACGCATAAATGC 100 224
SH03_RS18210 3682075 .. 3682112 - -17.1  -3.59946   GGTTTAAGCACAGAA   CCGGGTCGGATAAGACG TTCG CGTCTCATCCGACCTGA    TTGTTTAACCCTGAC 100 30
SH03_RS18195 3679955 .. 3679974 - -10.7  -2.57423   ATAGTGATTAATGTA            GCACCGC CTAATT GCGGTGC             TTTTTTTTACCTTGC  76 50
SH03_RS18190 NONE
SH03_RS18185 NONE
SH03_RS18180 3677128 .. 3677149 -  -2.9  -3.09635   ATCTGGATGAGGTAA           CGCACATTA TTTC TGATGAGCG            CCAGGTTGCAACTTC  43 100
SH03_RS18150 NONE
SH03_RS18145 3668701 .. 3668712 -  -2.2  -4.74801   GAATCGGACCAAAAA                GC-GC CAC GCAGC                TGCTGGTCGAGTTTC  68 259
SH03_RS18115 3661670 .. 3661681 -    -3  -4.41047   ATGCCTTAAGGAAAA                TTTC ATAT GAAA                 GTTAAGAATTAACAA  61 160
SH03_RS18110 3661247 .. 3661272 - -15.5  -5.84381   GCAGGAATAAAAAAA         GGGAGCACTGT ATTC ACAGCGCTCCC          GGTTCGTTTCGCAGC 100 194
SH03_RS18105 NONE
SH03_RS18100 NONE
SH03_RS18095 3659334 .. 3659352 -  -4.4  -4.93898   ATAGCAGTATAAAAA             GCGCGCCA TAG CGGCTCAC             CGTGCAACAACACAA  74 289
SH03_RS18090 NONE
SH03_RS18085 NONE
        gudD 3655091 .. 3655110 - -11.4  -3.58522   AGCATCAGTCTCAAA            CCGGCTCC AGAT AGAGCCGG             TTTTGGTTTTCTGTC  90 41
        rumA 3650756 .. 3650773 -  -5.5  -2.80816   CCTTTAGGGACCAGA             CCTGCCG AAAT CGGCAAA              TCGCAACTATTTAAC  50 32
        relA 3648468 .. 3648480 -  -6.3  -3.34534   TACAGTATATATCAA                TCTAC ATT GTAGA                TACGAGCAAATTTCG  59 43
SH03_RS18060 NONE
SH03_RS18055 3647805 .. 3647816 -  -2.2  -3.57144   TCTGTCAGGTGGAAA                CCTG TGAC CAGA                 ATAGAAGTGAGTTAG  47 46
        mazG 3646887 .. 3646902 -    -4  -4.43844   TCAGGAGTGAGAAAA              TAGCCCC TTT GGGG-TA              AATGTTTTTGACGCA  66 98
        pyrG 3645067 .. 3645091 - -18.7  -4.07562   GAAACTCCAGACAAA          CAACGCGTACC CAG GGTACGCGTTG          CCGCTCTAACTTTTT 100 44
         eno 3643680 .. 3643699 - -13.6  -5.37345   CTCAACCATAAAAAA            TGCCAGCC CGGA GGCTGGCA             TTTTTAAATCAGATA 100 50
SH03_RS18025 3641769 .. 3641809 -    -5  -4.08279   AGAGGCGACAAACAA TATAAATGAGTAGAAGTCT TTAC AGG-TTCCACCCATTTATA  ACGCTTATAAATGTT  63 44
SH03_RS18010 3636556 .. 3636567 -  -2.2  -4.55004   AAGAGAAAACAGAAA                CCAC CGTT ATGG                 GTTAGCGCACTAAAT  60 27
SH03_RS18005 3635008 .. 3635037 - -11.4  -4.21936   CTGAGAAGCCGAAAA       GGCAACGCCCCG TCATCG CGGAACGCTGCC        TGACACATTATTTTT 100 33
SH03_RS18000 3633627 .. 3633638 -    -3  -3.12668   CTTTAAACGCTAACA                GAAT GTTC ATTC                 GCACCTCCTACATTT  46 1
SH03_RS17995 NONE
SH03_RS17990 3631722 .. 3631744 -    -4  -4.60797   GGGTGACAGAGAAAA           TCCGCCAACC GCT GATTGCCGGT           GGGCTGGTGTGCGAT  70 281
        cysJ NONE
SH03_RS17960 NONE
SH03_RS17955 3624613 .. 3624638 -  -9.7  -5.45802   CTCGCAAAATAAAAA         CGCCCCCATCA TTTC TGACAGAGGCG          TTTAATTTGTCCGGC 100 46
SH03_RS17950 3621545 .. 3621567 -    -7  -4.55128   ACCGGGAAATTAAAA           GAAGATGTAC ATT GTGCACCTTC           CCTACTTAAGTAGGG  76 92
SH03_RS17945 NONE
SH03_RS17940 3619225 .. 3619239 -  -4.2  -3.04598   ATAAAGTTAGACATA               GAAAGG TTT CCTTAC               GCATTTTTGTTTGTG  47 22
SH03_RS17935 NONE
SH03_RS17930 NONE
SH03_RS17925 NONE
SH03_RS17920 NONE
SH03_RS17915 3615515 .. 3615529 -  -4.2  -3.53012   CGCGCGTCTGCGAAA               GCGG TTTATCC CCGC               TGGCGCGGGGAACTC  52 146
SH03_RS17905 NONE
        cysN NONE
SH03_RS17895 3610443 .. 3610460 -  -6.2  -3.15544   TGTTACTTTGACGAA             CCGGGC ATGGAA ACCCGG              TGGTGTCTCAGGATC  57 33
SH03_RS17890 3609982 .. 3610008 -  -4.4  -2.59191   GGATACCGCGACAAC         GCGGGCAAATGT ACC ACATTTGTCCAT         TGTTACGTATACCCA  45 112
        ftsB NONE
SH03_RS17880 NONE
        ispF NONE
        truD NONE
        surE NONE
         pcm 3605852 .. 3605866 -  -2.8   -4.7254   ATCCCCCAGGAAAAA               TTGGTT AAT AACCAG               TGACATAATTACCGT  64 133
        nlpD 3604635 .. 3604647 -  -3.3  -3.35996   TATTCTGACTCATAA                GGTGG CTC CTACC                CGTGATCCCTTGACG  47 73
SH03_RS17850 3603598 .. 3603621 - -14.6  -4.52857   ATTGTGCACAGAAAA          GGCCAGCCTC GCTT GAGACTGGCC           TTTCTGACAGATGCT 100 44
SH03_RS17820 3597246 .. 3597259 -  -3.1  -4.76193   AACGACAACATAAAA               TATGC CATC GCACA                TGCAGATTATCCGGG  71 314
SH03_RS17805 3593506 .. 3593531 - -15.5  -2.79968   GATTTAACTGCAAAT         TGCCGGACAGA TCTG CCTGTCCGGCA          TACTATTCATGAGGT 100 28
SH03_RS17770 3587019 .. 3587033 - -11.4  -3.57263   ACGCCCATCCCCAAA               CAGGCG TAA CGCCTG               CAAAACGGGCAAAGC  89 47
SH03_RS17760 NONE
SH03_RS17755 NONE
        hycD 3583573 .. 3583591 -  -3.7  -2.71263   AACTCTCTTTAATCA             CGCCGCC AGCAA GGAGACG             AACGCTAAAAATGCA  44 4
        hycE NONE
SH03_RS17740 NONE
SH03_RS17735 NONE
SH03_RS17730 NONE
        hycI 3579558 .. 3579582 - -12.1  -2.57136   GCACGAACCATGAAG          GCCCGATAAGC GCA GCGCATCGGGC          AATTTAGCATTTGGC  83 97
SH03_RS17710 3575292 .. 3575322 -  -7.7  -4.77157   GTAATGCAGGAAAAA      CGATGTCATCGACA CTAG TGACGATGACAT-G       TGATGACAATGTTTA  91 38
SH03_RS17705 3574530 .. 3574588 -  -6.7  -3.21099   TCCCGCCATCATGAA TTGCGTAACCCGC-CCTGCCGGACACGAC AGC GTCGCATCCGGCAGTCACAGGTCG-GCGA TACCGCCCGCTCCGT  59 96
SH03_RS17700 3572148 .. 3572179 -   -13  -3.04715   TACTGTGCCTAAAAT      GTCGGATGCGACGC TGGC GCGTCTTATCCGAC       CTACGGGGACGCATG  95 100
SH03_RS17685 3567488 .. 3567505 -  -5.5  -4.15044   CGCTTGCTGAATAAA             GTGCATC ATCT GATGCGC              CGTGACGATGCCATC  67 376
SH03_RS17645 3561528 .. 3561572 -    -5  -5.28778   AGGATTCAGAAAAAA GCTGATTAGCCAGAGGGAAGC TCAC GCCCCCCTCTTGTAAAT-AGC TACTGTACTCGCGCC  82 25
SH03_RS17640 3560910 .. 3560929 -    -8  -2.84098   CTGTTGAAGCAATTA            TACTGTAT GCTC ATACAGTA             TCAAGTGTTTTGTAG  61 26
SH03_RS17630 3559801 .. 3559815 -  -2.8  -2.56715   ATCGCCATTAATTCA               CTGATC AGT GATAAG               CTGTCAAACATGAGA  41 115
SH03_RS17625 3559406 .. 3559435 -  -8.5   -5.1925   TTACAACTTAAAAAA       GCAAAAGGGCCGC AGAT GCGACCCTTGTGT        ATCAAACAAGACGAT 100 193
        recX 3558783 .. 3558827 -  -7.3  -3.56675   CAAGCTAACGAAATA TC-GCCACCAGCTCCAGCGTGT CTTA AC-CGCCGG-GCTGGTAACTGA AAAGTGGGAATAAGA  66 79
SH03_RS17610 NONE
SH03_RS17605 NONE
SH03_RS17600 NONE
SH03_RS17595 3555079 .. 3555089 -  -5.4  -3.27029   CCGTATCAAGTAAGA                 GATG GTG CATC                 CGGGAGGATTACTCG  55 151
SH03_RS17590 3554938 .. 3554948 -  -5.4  -3.28487   CCATATCAAGTAAGA                 GATG GTG CATC                 CGGGAGGATTCGAAC  55 17
SH03_RS17585 3554664 .. 3554674 -  -5.4  -3.28487   CCATATCAATTAAGA                 GATG GTG CATC                 CGGGAGGATTACTCG  55 152
SH03_RS17580 3554270 .. 3554288 -    -6  -3.94933   GCAAGTCGAAAAATA             TGACGCTA CTT TAGCGTAA             TTGCTTGATTTTGTC  66 263
SH03_RS17570 3553671 .. 3553690 -  -3.6    -3.543   CGAGAAAAGCGATAA            CGCTTCACT CAC AGC-AAGCG            AACATCCACGGCGTC  51 14
SH03_RS17565 3553239 .. 3553267 -  -2.4  -2.79831   GTAATGGTGACCATA       TGTGCAGGC-CTA CAAT TAGTGCCACCACA        TCATGCCCTGAACGG  41 12
SH03_RS17560 3551470 .. 3551482 -  -2.6  -3.69283   GAAGCTATCTAACAA                CGGC ATTTA GCCA                CCTCCGGTAATTTTT  50 168
SH03_RS17555 3550907 .. 3550926 - -12.2  -3.50422   ACTAAGTACAACTAA            GCCAGTTC ATTT GAACTGGC             TTTTTTCAATTAATT  91 59
SH03_RS17480 3536126 .. 3536136 -  -8.2  -2.66272   CGGCACGCAAAGTTA                 GCCC GTC GGGC                 TGGATAAAAAATCTG  59 281
SH03_RS17470 3534791 .. 3534828 -  -8.4  -2.59039   AACGAGCTTGAGAAG   CGACGCCGGACG-CGCC CTAGC AGCGACATCCGGCCTCA   GTAATTAGATCAGGA  63 30
SH03_RS17455 3533577 .. 3533596 - -12.8  -3.29649   AGTGTAGCAGAGGAA            CGCGGCGC GTTA ACGCCGCG             GGGATGAGCACAGGT 100 41
SH03_RS17450 3533020 .. 3533041 -  -4.3  -3.07816   GCGCCAGTGAGTTAA           TGCGCCAGC ATTT ACTGACGCC            AATTCCCATTATCCA  48 63
SH03_RS17400 3522289 .. 3522312 -  -4.5  -2.63164   CCACATGTAAGCAAT          TTGCCCGCT TGGCAT AGCAGGCAT           TTTTTCCAGGTACTT  48 217
SH03_RS17390 3521237 .. 3521251 -  -2.9  -2.62098   TAAGTAAACCAACAT               GAAAA TCACT TTTTC               TTATATTATCGAAAA  41 45
SH03_RS17385 3520234 .. 3520257 -  -7.4  -3.77491   CACCAAATAAATCAA          GGGGTTACAT GAAA ACGTAGCCCC           TTTTTCTTTGGTAGT  70 148
SH03_RS17380 3519611 .. 3519628 -  -4.2  -3.45027   ACCGCTCATCAAAGA             CATCAT GATGAA ATGATG              ATATTCCGCATAAGA  52 204
SH03_RS17370 3514858 .. 3514873 - -10.4  -3.92324   CCTGGTAACATGAAA              GCCCAC AGAT GTGGGC               TTTTTCGTTGATGGT  89 40
SH03_RS17340 3508916 .. 3508933 -  -5.5  -4.06904   GTATCTAATTACAAA             GTGACAG AGAG CCGCCAC              GCCAGCGCGGCCAGA  63 1
SH03_RS17335 3508384 .. 3508408 -  -5.5  -3.84406   TCCCTACCATAACAA          CCCTGATTGCC TCC GGCGGTCGGGG          GTTTCTTTTTTCTCC  61 199
SH03_RS17290 3501913 .. 3501923 -  -2.6   -3.3095   AGACATCCGTGACAA                 TTTT GCG AAAA                 TTAAGGAGATGTTAT  46 357
SH03_RS17285 NONE
SH03_RS17280 3497934 .. 3497958 -  -7.2  -2.87325   ATTTTTTACAACAAT          GGCCTTTC TTATGGCTG GAAAGGCC          TGATTTGTTTGTATT  59 160
SH03_RS17260 3494148 .. 3494175 - -12.8   -2.8733   TGTCGGATAAAATAT        TTATCAGCCCAG CTCT CTGGGCTGATAT         TTCTAAAAGATCGCA  91 236
SH03_RS17245 NONE
SH03_RS17240 3490720 .. 3490736 - -12.3  -5.10077   AAAGACGTTAAAAAA              GGTGCTC AAT GAGCACC              TTTTTTCTGTCTGTT 100 39
SH03_RS17220 NONE
SH03_RS17215 3486809 .. 3486834 - -14.7  -4.45544   GCGGAGTAACGAAAA         CGGCCCGGCAT TCGC ATGCAGGGCCG          TGAATTATTACGAAA 100 48
SH03_RS17200 3482951 .. 3482983 -  -9.2  -4.63218   CTTGTGTGAATAAAA     CAACCGGACCCCATC GAGG AACGGAGTCCGG-TG      TCATATTAAAAGCCC 100 218
SH03_RS17195 NONE
        rimM NONE
        trmD NONE
SH03_RS17180 3480873 .. 3480894 - -11.5  -5.51046   CAAACAGATAAAAAA           GGGCCAGCC AATT GGCCAGCCC            TTCTTAACAGGATGT 100 56
SH03_RS17155 NONE
        tyrA 3475654 .. 3475683 - -15.1  -4.28361   CCAACCTGATGAAAA       GGTGCCGGATGAT GTGA ATCATCCGGCACT        GGATTATTACTGGCG 100 32
        rluD NONE
SH03_RS17120 3470958 .. 3470972 -  -5.7  -3.83998   CTACTGGAGATTAAA               TGAGG TCATC CCTCA               ATTATTCAAGGTTAT  63 98
SH03_RS17115 3468315 .. 3468332 - -12.7  -5.04597   ACTTATAGACAAAAA             CGAGCCC CGAA GGGCTCG              TTTTATCATTTACTG 100 35
SH03_RS17110 3466324 .. 3466337 -  -2.3  -2.72471   TTTTCATCAGACAAT               CTGTG TGAG CACTG                CAAAGTACGCTTCTT  40 34
SH03_RS17105 3466052 .. 3466063 -  -4.4  -4.09503   AAATATATCAAACAA                GACT TAAC AGTC                 TGTTTTGAGATATTG  61 73
SH03_RS17100 3462934 .. 3462947 -  -2.4  -2.78679   GGCCGCCAGGCAAAT               TCTG TTTTAT CAGA                CCGCTTCTGCGTTCT  41 84
SH03_RS17095 NONE
SH03_RS17090 NONE
SH03_RS17085 3460831 .. 3460847 -  -9.4  -3.51032   ATCCTGTAATCACAA              CCCCGT CCTGT ACGGGG              TTTGTTTTTTGGAGG  76 368
SH03_RS17055 NONE
SH03_RS17050 3454199 .. 3454226 - -13.4   -3.5394   AAATTTGCGGGGAAA        TGCCGGATGGCA GAGT TGCCACCCGGCT         GATTTATCAGGCTTT 100 32
SH03_RS17040 3452762 .. 3452785 - -16.8  -5.65513   TATTAACGAAAAAAA          GCGGAAGAGG TCGC CCTCTTCCGC           TTAGTAACTTGCTAC 100 48
SH03_RS17030 3451155 .. 3451174 -  -7.1  -3.80625   TGTCGACAAGTTAAA            TGCCGGG TTTAAT CCCGACA             TTATTTTTATCCAGC  70 32
SH03_RS17015 3448578 .. 3448604 -  -6.6  -3.62775   ACCATGCTCCAACAA         GAAATAGACGAA TAT TACGCCCATTTC         CGCGTCTCAAATAAT  63 190
SH03_RS17005 NONE
SH03_RS17000 NONE
SH03_RS16995 NONE
        rseB NONE
SH03_RS16985 3444054 .. 3444071 - -11.3  -4.32607   GCAAAATGCAACAAA             GCCAGTG AAAT CACTGGC              TCGCGTCTTCCGAAG 100 18
SH03_RS16980 3442031 .. 3442052 -  -5.1  -2.68015   GGCAATCACCAGAAT           CAGGGCAAA CATA TTCGCCATG            CCAACTCCTAAGGGT  49 40
SH03_RS16975 3441032 .. 3441064 - -21.5  -4.07877   TTATCTCATAAATAA      TTCACGTTGTCGCCA TAA CGGCGACAACGTGAA      CGAAGATGGCTATTA 100 38
         rnc NONE
SH03_RS16965 NONE
        recO NONE
SH03_RS16955 3437728 .. 3437743 -  -2.6  -2.71924   TATCCGTGCCTAAAC              CTAATA TTGC CATTAG               CCACGCGCTTCCAGC  41 22
        acpS 3437299 .. 3437335 - -11.6  -4.83759   AATTAAAGTTAAAAA    GTAAAACCCCCGTTCC TTACC AGTTCGGGGGTTTTAC    TTTTTAAAGAGAACG 100 50
SH03_RS16940 NONE
SH03_RS16935 3436810 .. 3436839 - -15.1  -3.78022   TTTATAGTTATTAAA       GGTGCGTCCGACTG GTT CA-CCGGACGCACC       TTAAGTACGTTTCCT 100 45
SH03_RS16920 NONE
SH03_RS16915 3433697 .. 3433713 -  -5.1  -3.28712   CCTCGCTGCGTACAA              TATGGGC TAT GCGCATA              TGCTGGATGCCCGCG  54 408
SH03_RS16905 3428320 .. 3428337 -  -8.4   -5.4492   TACAGACACAAAAAA             GCTCCC GGAGTT GGGAGC              TTATGATAGTGGTTG 100 86
SH03_RS16900 3426387 .. 3426401 -  -2.8  -5.01553   AACTGACAAATAAAA               TAGCCT GAT AGGATA               GGCTGTTAGCATTAT  70 37
SH03_RS16895 NONE
SH03_RS16890 NONE
SH03_RS16885 3423728 .. 3423742 -    -5   -4.3534   CGTGAAGCAGGAAAA               CATTCA TTA CGAATG               CTTTGGCCCGCATAA  67 95
SH03_RS16875 3420818 .. 3420835 - -11.3  -4.00066   GCGATAACGTAGAAA             GGCTTCC CGAA GGAAGCC              TTGATGATCATAAAC 100 186
SH03_RS16865 3416188 .. 3416201 -  -2.5  -3.53012   CGCGTGCCGCTCAAA               TATTA CAGT TAATA                GGGTTTAGTGAACGC  48 30
SH03_RS16860 NONE
SH03_RS16855 NONE
SH03_RS16850 3412530 .. 3412565 -  -3.8  -3.30452   TAACAATACGATTAA    TTTTCATCCCTGCCGC ACCC GCGCCAGGGGCGTTAA     GGTTTAGCGTTTCGC  49 29
SH03_RS16845 NONE
SH03_RS16840 3410517 .. 3410548 - -14.4  -3.44848   CGGCGTTAGGAAAGA      TGCCGGATGCGGCG TGAA CGCCTTATCCGGCA       TTTAATAAATTACAG 100 35
SH03_RS16805 3404742 .. 3404761 -  -3.6  -3.23855   TGTTGCAAAAATAAT            GCGTAA TTATGCCG TTACGC             TTGCCAAACGTTCCT  49 12
SH03_RS16800 3403441 .. 3403454 -  -2.4  -4.13282   AGCAGATCCGCAAAA               TGCT CGAATC AGCA                TGAGGGAACAACTTT  55 20
SH03_RS16780 3399293 .. 3399307 -  -7.8  -3.30124   CTGTAGGCCTGATAA               GACGCA TTA CGCGTC               GCATCAGGCAACGGC  66 43
SH03_RS16775 3398286 .. 3398309 -  -2.4  -2.91593   CATTGCTCTATAAAC          TCCGTACATC ACTC AATGCAAGGA           ATCAGGCTACCGGCT  42 101
SH03_RS16770 NONE
SH03_RS16765 NONE
        iscA 3396263 .. 3396289 -  -8.7   -4.6951   ATCAGGTAAAACAAA        CCCCACGCGCAG GCGA CCACG-GTGGGG         TTATCGGTATGCGCA 100 41
        hscB 3395673 .. 3395684 -  -2.2  -2.78867   CTAATTTGTAATAAG                GCCA TGTT TAGC                 TTCCAGAAATTAAAA  41 35
        hscA NONE
SH03_RS16745 NONE
SH03_RS16740 3393124 .. 3393143 - -12.8  -4.07568   TCCTTCTTTGTAAAA            GGGCCGCC AGTT GGCAGCCC             CAGGATTTTTCCGCT 100 160
SH03_RS16735 3391788 .. 3391799 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCATATTA  64 43
SH03_RS16730 3390811 .. 3390825 - -11.4  -4.10744   CGAGGTAAATAATAA               CCGGAG TCT CTCCGG               CGACAATTTACTGGT 100 99
SH03_RS16720 NONE
SH03_RS16715 3381718 .. 3381731 -  -2.5  -4.09511   AACATTTTTTTAAAA               TAAAA TGAG TTTTA                GCAACAATCAGGGAC  57 49
SH03_RS16710 3381083 .. 3381114 -  -8.7  -5.04249   GGTTGAAAAAAGAAA     CG-CCCCGG-TGAGC GGCT GCTCGTCCGGGGGCG      CTGCATTGTACAAAT 100 86
SH03_RS16705 3379829 .. 3379866 -   -18  -4.42653   ACTTCATTCATAAAA   CATTACGCCACGG-TAC ATAAA GTAACCGTGGCGTAATG   GCTATCAGACCGCTT 100 30
SH03_RS16700 NONE
SH03_RS16695 3377399 .. 3377419 - -13.3  -3.00298   GGGTTCAATCATACA            CGGGAAGCG AGG CGCTTCCCA            TCACGTTATTATTTT 100 34
        hisS NONE
SH03_RS16685 NONE
SH03_RS16680 3374165 .. 3374196 - -13.8  -3.90048   TCGTTGTTAAAAACA      GGAAAACGGCCCCT GTCC AGGAGCCGTTTTCA       AAGTGAACGACAGAG 100 45
SH03_RS16675 NONE
SH03_RS16670 3372267 .. 3372279 -  -7.7   -2.9296   GAAATGCTAACCACA                CGTCT GGA AGACG                GCTGGATAGAAAGTG  58 87
SH03_RS16660 3369317 .. 3369339 - -14.9  -4.33674   AACAGATAATATAAA           TCGCCCGAC ATGAA GTCGGGCGA           AGAGAATCAGGAGCC 100 32
        guaA 3367652 .. 3367671 - -12.2  -5.47159   CTTGAAGATAAAAAA            CCCTCTGT AGTA ACAGAGGG             TTTTGTTCATTCATA 100 54
SH03_RS16635 3365808 .. 3365821 -  -3.9  -3.34629   ATATGAAAGTACCAA               TTGAT ATAT ATCAA                ACAAAATAACCCTGA  49 66
SH03_RS16630 3363401 .. 3363435 -  -9.2  -3.02043   AATCGCCGCTTAATA     CTTTGCGGGCCGAC GAGAAAT GTCGGCCCGCATTA     TTCAGGCACTTTCGC  71 27
         upp 3356951 .. 3356969 -   -11  -5.81412   TTTACTCAAAAAAAA             GCCGACTC TTA AAGTCGGC             TTTAATTATTTTTAT 100 44
SH03_RS16600 3355569 .. 3355619 -  -2.4  -2.72649   AGTTTACCACAGAAT CCCATGATGTTTGAACCGGGCAGC AAC ACTGCCCGGTCGGTACATTATTTG TCTGTTATATCCGCG  40 19
SH03_RS16595 3354397 .. 3354409 -  -2.6  -4.86731   CCTGCTGAAAGAAAA                CGGC GTGGA GCCA                GAAGTGGTGCTCTAC  68 433
SH03_RS16580 3351529 .. 3351558 - -16.5  -4.62872   AGGAACCCTGAAAAA       TCAGCCCGGCGAA ACAG TTCGTCGGGCTGA        AGATTATTCTTGCGC 100 29
SH03_RS16505 NONE
SH03_RS16500 3334546 .. 3334565 - -11.4  -5.34555   TCATATCAGAAAAAA            GGGCCGGA TGAT TCCAGCCC             TGTATTTTTACTTGC 100 33
SH03_RS16490 3333635 .. 3333654 -  -2.8  -2.75074   TGCACGGCAAGATGA            TGAACAGA AAAA TCAGTCCA             GCTGTACACCCAGGC  42 18
SH03_RS16485 3332621 .. 3332637 -  -2.3  -3.75153   GCCCCGGAAGTTAAA              TGCTTTT ACC AAAAGTA              TTGCATTGTGCCGGA  51 4
SH03_RS16480 3330501 .. 3330515 -  -4.2  -2.71055   TTGAACAACAAAATG               GTCATG TTT CATGGC               GAACTCCTTAACTGA  45 96
SH03_RS16475 3329734 .. 3329786 - -14.8  -2.57931   CGTAGGCCGGATAAG GCGTTAACGCCGCATCCGGCAATG GTGAA CGATGCCTGATGCGACGCTCACGC GTCTTATCAGGCCAG 100 53
SH03_RS16440 NONE
SH03_RS16435 NONE
SH03_RS16430 3318062 .. 3318084 -  -4.1  -3.74077   GTTCAGAGATGGAAA           TTACCCTGC AAGCG GCAGAGAAA           TTAGCAGGAGAAGGT  56 417
SH03_RS16415 3312795 .. 3312823 - -12.6  -3.66378   TATATTGCAGCTAAA       CTGCTTACCCTGA ATAT TCAGGGTAAGC-G        TGAGAGTTAAAAAAA 100 42
SH03_RS16410 NONE
SH03_RS16405 NONE
SH03_RS16400 NONE
SH03_RS16395 NONE
SH03_RS16390 NONE
SH03_RS16385 3308866 .. 3308891 -    -9  -3.15182   ATGAAAAAGGAGAGA         GCGTGACGCC CGAATC GACGTCACAC          AGGGTGATTACAGGT  69 33
SH03_RS16380 NONE
SH03_RS16375 3307095 .. 3307111 -  -8.7  -3.55444   CTGTTACTCCTTAAA              CAATGCG AAA CGCATCG              ACTAATACACAGCGA  73 4
SH03_RS16370 NONE
SH03_RS16365 3304898 .. 3304943 -    -9  -3.53811   CGGATGCGGCGTAAA CGCCTTATCCGCCCTACATG TGCAAT CCCGTAGGCTGGATAAGACG CGGCAAGCGTCGCAT  73 148
SH03_RS16360 NONE
        eutA 3302215 .. 3302232 -  -4.1  -2.58544   CTTTAGTTTCATAAG             TCGTTCC CTCA GGAAGGA              AATGCGAGTGATTTC  45 16
SH03_RS16350 NONE
SH03_RS16345 3299925 .. 3299941 -  -2.1  -3.89336   CGAATCAAATCTAAA              GCTGGCA TGA TGCCTCC              TTATCGGGTCATGTT  51 26
SH03_RS16340 NONE
SH03_RS16335 NONE
SH03_RS16330 3297420 .. 3297440 -  -6.7   -3.6682   GTCGAGCGACGGAAA            GCGATGGCC TAC GGCGAGCGC            GAGCGCAATTTCCAG  63 247
SH03_RS16315 NONE
SH03_RS16310 NONE
SH03_RS16305 3294099 .. 3294117 - -10.3  -4.20868   TCCTGAAAATAATAA             TGCCACG CAATC CGTGGCA             TTGTTGAGCGCTATT  91 81
SH03_RS16300 3292945 .. 3292972 -  -8.4   -5.2204   CAGAAGTAATAAAAA        GGCCAGTCAGTA ATGT TACTGGCTGGTC         TGAGAGTGCTGACAA 100 231
SH03_RS16280 3288180 .. 3288192 -  -5.5  -3.06696   CTCCTTGTTAATACA                GAGCG TTA CACTC                CATTCCCTCTGAAAA  52 117
SH03_RS16275 3287328 .. 3287351 -   -11  -3.93038   TAGTTCAAGACGAAA          TCCTCCCCAC AAAT GCAGGGAGGA           AACAGAGGTGAATCA  90 38
SH03_RS16270 NONE
SH03_RS16265 NONE
        cysW NONE
SH03_RS16255 3283200 .. 3283227 -  -9.1  -4.72272   CCTTGCCATTAAAAA        GCCCGGA-TCGC GGGAA GCGCCTCCGGGC        GTTTAACATTCACTC 100 47
        cysM 3282052 .. 3282110 -  -2.3  -5.06103   ACAACTGTTAAAAAA GTGCGCTTTGTTTATGCCGGATGCGGCG TAAA CGCCTTATCCGGCCTACA-AAATCGTGC TAATTCAATATATTG  68 119
        pdxK 3279895 .. 3279912 - -12.7  -4.65895   TGCCGCAGTGAAAAA             TGGCGCC CATC GGCGCCA              TTTTTTTATGCTTCC 100 31
SH03_RS16205 3273731 .. 3273747 - -10.8  -4.67904   CATCAATGCTAAAAA              CCCCCG ACAAG CGGGGG              TTCGAAGAGGAGTTA 100 57
        ligA NONE
SH03_RS16195 3271437 .. 3271470 -    -3  -3.12505   ACGCCAGACCGAACA     GTTACAGGCGCAGC AGGAAA GCAGCGCCGATAAA      GCTTAAAGCGGACGC  46 28
SH03_RS16185 3269143 .. 3269167 -  -7.1  -2.84999   ATCAAACCTATTACA          CTGGCGACA ACGGCTA TGTCGCCGG          CTGGGTTGCAGGTTA  54 320
SH03_RS16175 NONE
SH03_RS16170 3266230 .. 3266252 - -11.3   -4.4648   ACCTTTATCATAAAA           GCAGCTCTG AAGAG CAGAGCCGC           GAATCCTTTTAATGA 100 34
SH03_RS16165 3266029 .. 3266045 -  -2.3  -3.48772   AAGTGCTCCATATAA              TAAATAC ATC GTATTAA              ATTATCATGGCATAA  47 30
SH03_RS16160 3265027 .. 3265041 -  -9.2  -5.17576   CACCAATGTAAAAAA               GCGCCC TAA AGGCGC               TTTTTTGCTATCTGC 100 109
        gltX 3262746 .. 3262768 -   -12  -5.73978   AGCATAAATAAAAAA           CGGCAGGATA TTA TCTCCTGCCG           TTTATCTTTTTACAC 100 46
SH03_RS16120 3261670 .. 3261684 -  -4.3  -2.50816   CGTTTACGTACCAAG               TTTGC TGGGT GCAAA               ATTTGGTGGAGCTAA  45 29
SH03_RS16115 3261544 .. 3261563 - -11.4  -5.43414   AGCAGAGACAAAAAA            CCCCCGCT TTGC AGCGAGGG             TTGGAAATTTGGTGG 100 35
SH03_RS16110 3258999 .. 3259025 -  -3.6  -5.34365   GGAGAATAACAAAAA         TGGTCATCTGGA GCT TACAGGTGGCCA         TTCGTGGGACAGTAT  80 175
SH03_RS16095 3254884 .. 3254915 -   -13   -2.6627   CCAATGGAGCACAAT      GCCTGATGCGACGC TAGT GCGTCTTATCAGGC       CTACAAACCGGCTCT  91 110
         glk 3251956 .. 3251979 - -11.8  -2.81922   TATGATTTAAAAGAT          TATCGGGAGA GTTA CCTCCCGATA           TAAAAGGAAGGATTT  83 39
SH03_RS16070 NONE
SH03_RS16065 NONE
SH03_RS16060 NONE
SH03_RS16055 3248017 .. 3248032 -  -3.3   -3.0644   ATTGAATCGTTAACA              TAACC GCTCCG GGTTA               ATCAGGAGATCATCT  44 35
SH03_RS16050 3245170 .. 3245181 -  -5.8  -3.02144   GTAGCGTGGTGAATA                TGCC GCCG GGCA                 ATTCGCAGCCGCGCG  53 366
SH03_RS16030 3240547 .. 3240566 - -13.6   -4.8622   CTGTGCAATGAAAAA            CAGGAGCC ATCA GGCTCCTG             TTTGCATTTCTGACG 100 48
SH03_RS16020 NONE
SH03_RS16015 3238351 .. 3238361 -  -5.4  -5.15381   AAGAGACTGAAAAAA                 CATC AGC GATG                 ACGACCACACACTCT  83 154
SH03_RS16005 3237208 .. 3237244 - -11.9  -3.92542   GCGAGCGCCAAATAA    TTTTATGACCACAAC CTGTCGT ATTGTGGTCATAAAA    AATTGTCGGCTGGAG 100 80
SH03_RS16000 3235511 .. 3235529 -  -4.4  -2.94161   GAAATTTTTATAAAT             TGGGAGCC AGA AGCCCCCG             TTAATATCAGATGGC  47 32
SH03_RS15995 3233736 .. 3233776 -  -3.1  -3.30441   TAGTATTTCCGATAA  GGGTCCCCTCACCATCGCA TAA TGAGTTGGCAAGAGGAGAC  GATGTCAGTATTTAA  47 37
SH03_RS15990 3232721 .. 3232745 -  -6.5   -5.0133   TATGCCTTGAAAAAA         GCCGAAG-GT GAAAAG ACACTTCGGC          ATTTATGTAAAATCA  84 54
SH03_RS15985 3231387 .. 3231401 -  -6.4  -4.09519   ATCAGTTAGAAATAA               CACCTG TTT CAGATG               ACAGTAAGCCTGAAA  68 179
SH03_RS15970 NONE
        emrB 3223946 .. 3223993 -  -7.1  -3.22884   TCAGTAAGTTACCAA CAGATGCACGGTTTCAGCGCAG AACAA CTGCG-TAATACCACTCATCTG GTGTGGGCGACGGGA  57 202
SH03_RS15950 3220092 .. 3220125 -  -7.4  -3.36289   CACCATTCCAATCAA     TCCCCTGCTG-CTTC AAGTA GATGTCTGCAGGGGA     CACCATCCTTGTGTT  64 126
SH03_RS22880 NONE
SH03_RS15905 NONE
SH03_RS15900 NONE
SH03_RS15895 NONE
SH03_RS15890 3214445 .. 3214459 -  -7.1  -2.86747   GATGCAGCAGAAGCA               CAGCG CCAGT CGCTG               ATTGATACTGCAATG  54 174
SH03_RS15850 3207748 .. 3207767 -  -7.9  -5.68489   GATAACAACAAAAAA            GGTGAGT TTTGCG ACTCACC             TTTTTTATTTGTTTC 100 41
SH03_RS15835 3204137 .. 3204163 - -20.2  -5.26907   GAAGAGAAAAGAAAA         CGCCCCTGCCAG CAA CTGACAGGGGCG         TACGTACCCGAGAGG 100 43
        fadI NONE
        fadJ 3200478 .. 3200501 -  -4.6  -2.90571   AATGGCGTAAGTATA          GTCAATATGC GTTT ACATTTTGAC           CAACACTCCGCCATT  50 70
SH03_RS15820 3199814 .. 3199846 - -14.4  -3.21099   CTGCCTGATGAGCAA      TTATGCCCAATGAA TCTAC CTCATTGGGCATAA      TTTGGAACTCATCAG 100 37
SH03_RS15815 3198583 .. 3198606 - -13.2  -3.42684   AAATCCATTTAAATA          CCCCATAGCA GTGT CGCTATGGGG           GTATGCCTTACAGGT 100 33
SH03_RS15810 NONE
SH03_RS15805 NONE
SH03_RS15800 NONE
SH03_RS15795 NONE
SH03_RS15790 NONE
SH03_RS15785 3192339 .. 3192350 -  -3.6  -3.45027   AGCCGTTATTAAATA                CCGA AGGT CCGG                 TGAAATATGTTCGCC  51 434
SH03_RS15775 NONE
SH03_RS15770 NONE
        mepA NONE
SH03_RS15760 NONE
SH03_RS15755 NONE
SH03_RS15750 3187376 .. 3187390 -  -7.1  -3.30124   GTGTAGGCCTGATAA               GACGC GATAA GCGTC               GCATCAGGCATGCTG  64 57
SH03_RS15740 3183819 .. 3183836 - -11.3  -4.64598   CAATGATGTGAAAAA             GGGAACC ATCA GGTTCCC              TTTTGCGTTAGTGCC 100 105
SH03_RS15735 3182016 .. 3182027 -  -4.4  -2.83522   AGCTGGTGACCAAAC                TTGC GGCG GCAA                 CGGGGGAACCCAGCA  46 471
SH03_RS15725 3180206 .. 3180233 -  -7.7  -4.04579   TCCAGAAATAGCAAA        GCTCCCTGCCA ATGTTA CAGCAGAGAGC         ATGAAGAAGAGATTA  74 38
SH03_RS15720 3179170 .. 3179187 -  -4.1  -2.62184   GCTGGTCGGACATTA             GTACAGA TACT CCTGCAC              CAGTTTCTCGGCGAT  45 5
        truA NONE
SH03_RS15710 3177589 .. 3177601 -  -3.3  -5.24531   ACTTTGGATAAAAAA                GTGGT CGA ACCGC                GGAGTTACTTTTTAT  75 37
SH03_RS15705 3176510 .. 3176532 -   -17  -4.46656   GTGAGAATAGCAAAA           GGGCAGAGCC AGT GGCCCTGCCC           TTATCAGTTATCAGG 100 36
SH03_RS15700 NONE
SH03_RS15695 3174397 .. 3174422 -  -9.8   -5.1356   GCGCATCAATAAAAA         TGGCGCTGAA AAAATA TTCAACGCCA          TCGACTTTTTATGCC 100 156
SH03_RS15690 3173805 .. 3173821 -  -2.9  -2.64243   CCACATCTCAGAGCA              CTTACGC TCT GGGCAAG              AAACTTGACGAGCTT  41 10
SH03_RS15685 3172221 .. 3172239 - -12.4  -2.53263   GGGAGTTGCAAGTCA             GGGTGCCA GAC CGGCACCC             TCAGCGAAGGCATCA  86 38
SH03_RS15680 3171561 .. 3171579 - -13.2  -4.07687   ATCGCGGTTGCAAAA             TTGCCCTG AAA CAGGGCAA             CAGCGGAGTTATGCG 100 34
SH03_RS15675 3170389 .. 3170399 -    -4   -4.3739   TATCGTGCCATAAAA                 TTGA CCA TCAA                 GGCAAAATATCCCGC  63 166
SH03_RS15670 NONE
SH03_RS15665 NONE
SH03_RS15660 NONE
SH03_RS15655 3167237 .. 3167260 - -12.4  -3.73042   TTCCCCATGAAAATA          CTCCGGCAGC GTTA GCCACCGGAG           AGGAAATTATTTCAG 100 32
SH03_RS15650 3165656 .. 3165696 -  -6.8  -3.93583   GAATTTACCCATAAA CTCTGCGCTC-GCTGGGAA GAAA TTGCCTGCCGGGCGCAAAG  TGACAAAACGCGAGT  68 509
SH03_RS15630 NONE
SH03_RS15625 3162776 .. 3162790 -  -3.5   -3.2115   TAAATTACGGATTAA               TCGCG ACCTG CGCAA               TGATACTTTGATCAT  48 0
SH03_RS15620 3162144 .. 3162157 -  -9.5  -3.17553   CTAAAAATGTTAAGA               GCCGC AATT GCGGC                TCTTTTTTCATTCTG  72 33
SH03_RS15600 3156700 .. 3156715 -  -3.3  -3.45707   TAAAGATTCAAAAAT              TTGTG CAAATT CACAA               CTCAGCGGGACAACG  49 42
SH03_RS15595 3156164 .. 3156182 -    -6  -5.76949   TACGGTGAAAAAAAA             GAAGGC TGAGTAT GCCTTC             TTTTATATGCGTAAT 100 51
SH03_RS15590 NONE
SH03_RS15585 3154933 .. 3154950 -  -9.8  -5.24129   TTCTGCCATAAAAAA             GCCCCG ACGAGA CGGGGC              TAAATCATGATCAGG 100 45
SH03_RS15580 3152688 .. 3152698 -  -3.2  -5.09225   AGGCTATTGAAAAAA                 TCGC TCA GCAA                 AAACTGGTCGATATG  77 378
SH03_RS15565 3149159 .. 3149188 -   -15  -5.86061   TTTTACTAAAAAAAA       GCCGCTGGGGTT TAAAAC ACCCCCAGCGGC        TCGTTTTTTACACTA 100 71
SH03_RS15560 NONE
SH03_RS15555 NONE
SH03_RS15550 NONE
SH03_RS15545 NONE
SH03_RS15540 NONE
SH03_RS15535 NONE
SH03_RS15530 NONE
SH03_RS15525 NONE
SH03_RS15520 NONE
SH03_RS15515 NONE
SH03_RS15510 3136596 .. 3136608 -  -5.5  -4.08216   TTATTCCTTGTAAAA                GTCCC GTC AGGAC                CGGATTTTCAACGAA  65 153
SH03_RS15505 NONE
SH03_RS15500 3133536 .. 3133554 - -11.7  -4.82901   TCTTTTTCAGAAAAA             CCGCCGA GCATG TCGGCGG             CTTTCTGACTTACAA 100 50
SH03_RS15485 3131113 .. 3131128 -  -4.7  -3.28001   CATTGTTAAATGCAA              TACCG TATATT CGGTA               TGTAACAGCGATATC  53 138
SH03_RS15470 3127472 .. 3127505 - -22.7  -3.35073   ATCATTGTTAATTAA     TTCGACCAGTCAGCA AATA TGCTGACTGGTCGAA      CATAGTTTGCTAAAC 100 46
SH03_RS15455 NONE
SH03_RS15450 3124209 .. 3124239 - -13.4  -2.85847   AAGCCTCACATTATA       CGGGGTACTACA AAAAAAA TGCAGTACCCCG       GTGTAGGGAGGTTTT  93 39
SH03_RS15445 NONE
SH03_RS15440 NONE
SH03_RS15435 NONE
SH03_RS15430 NONE
SH03_RS15425 NONE
SH03_RS15420 3117119 .. 3117133 -  -5.8  -3.23045   ATTTACAGATTAACA               GATAAA CTC TTTATC               AACGGCAATGGAATG  55 71
SH03_RS15415 3116633 .. 3116647 -  -2.1  -3.88985   AAAACGCTTCATAAA               CTTGC GCTAA GCAAA               GCCTATGCCTTGCTC  54 181
SH03_RS15375 3108517 .. 3108538 - -13.1  -2.93073   CTTCTGTAACAATGA           TGACAGCCA TTAC TGGCTGTCA            GATTGAAAATTTAGT  95 36
SH03_RS15365 3107234 .. 3107256 - -11.2  -3.38832   TAGTAAGAAACTGAA           TGGCGCGACA GAA TGCCGCGCCG           GAAGGGATCAGAAAC  81 33
SH03_RS15360 3105943 .. 3105959 -  -7.9  -3.72576   TGCCGGTGCAGTAAA              CCGGCAC AGA GTGGCGG              AATCAGACAGATAAG  70 28
SH03_RS15355 NONE
SH03_RS15350 3103703 .. 3103736 -  -8.1  -3.21772   AAGCTCCTTAGAATA     TGTGGGCGTTACCGT TGTC ACAGCAACGCCCGGA      GTGATTAGTGGCTGT  63 30
SH03_RS15345 NONE
SH03_RS15340 3101538 .. 3101570 -  -7.7  -3.43553   ATAACCACTAATTAA      CACAGGCCCACAG CCGATCC CCATGGGCCTTTG      ATATCAATAACTACC  68 29
        glpT NONE
        glpQ 3093433 .. 3093458 - -15.5  -2.86743   AAATTTGATATGAGA         CAGGATGGCGC ATGA ACGCCATCCTG          CAGTAACATTACTCT 100 34
SH03_RS15295 3092251 .. 3092276 -  -7.6  -3.53811   TTCAGCCGGGGGAAA         TTTTGCCCTG TTGTTG CCGGGCAAAA          GGCGATATTGAAATC  68 103
SH03_RS15270 3083906 .. 3083917 -  -7.2  -3.30124   CCGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCAACCGT  64 57
SH03_RS15260 3080252 .. 3080273 -  -8.7  -4.55023   CCTAATACGACAAAA           GCCCAGACT TTGC AGCCTGGAC            TTTTCAATTCAAACA  93 77
SH03_RS15255 NONE
SH03_RS15250 3077833 .. 3077855 -  -6.3  -2.53894   ATCAGCATTAGCAAG          CCCTGTTCCC ACAA GAG-ACAGGG           ACAAGCACGCTGCTA  53 38
SH03_RS15245 NONE
SH03_RS15240 NONE
SH03_RS15235 NONE
SH03_RS15230 3070826 .. 3070870 - -13.2   -3.3482   GAACGGTTGAATTAA TCAATAAAAACACCCGATAGC GAAA GTTATCGGGTGTTTTC-TTGA ACATCGACGGCGAAG 100 54
SH03_RS15195 3060496 .. 3060548 - -12.7  -2.59298   TAGGCCAGATAAGAC GCGTCAGCGTCGCATCTGGCATT TGCACTG AATGCCGGATGCGGCGTAAACGC CTTATCCGTCCTACG  88 36
SH03_RS15180 NONE
SH03_RS15175 3056547 .. 3056558 -    -3    -3.965   GGTTAAAATCAATAA                CTTA TTCT TAAG                 TATTTGACAGCACTG  56 7
SH03_RS15170 3055143 .. 3055156 -  -9.5  -5.43514   AAAACAATGAAAAAA               GGGCC CGCA GGCCC                TTTGTTCGATATCAA 100 47
SH03_RS15165 3053959 .. 3053972 -  -2.3  -2.70932   CTCCCTGGTTAAGGA               TAGCC TTTA GGCTG                CCCGGTCACCATCAC  40 64
SH03_RS15160 NONE
SH03_RS15155 NONE
SH03_RS15150 3050463 .. 3050493 -    -9  -2.79183   GGGATTTTTAGCATA       TTGACCTGACGG CAGCAGT CCGCCAGGTCAG       CGTCGTAATATTATG  67 36
SH03_RS15145 3048602 .. 3048634 - -26.5  -2.82516   CGTCTTATCAGCATA      CGCCACATCCGGCAT ACC ATGCCGGATGTGGCG      TATCATTACAACGCA 100 31
SH03_RS15130 NONE
SH03_RS15125 NONE
SH03_RS15120 NONE
        napG NONE
        napH NONE
        napB NONE
SH03_RS15100 3041181 .. 3041191 -    -4  -3.09193   AGCATACCCACGCAA                 TAAC CCT GTTA                 AAAACCTGGCTCGAC  49 23
SH03_RS15095 NONE
SH03_RS15090 3039891 .. 3039917 -  -3.1  -2.59883   AAAATCAGTAATCCA        GCGTTATTGAAT GCTG ATTCG-TAACGC         TGCCGCCGTCGCAAA  42 2
SH03_RS15085 NONE
SH03_RS15080 NONE
SH03_RS15075 NONE
SH03_RS15070 NONE
SH03_RS15065 3035937 .. 3035949 -  -3.3  -5.07486   CACGCCCAATAAAAA                CCTCA TTG TGCGG                CCTCCTTACTGTATT  71 15
SH03_RS15060 3034683 .. 3034709 -    -8  -5.18726   GGGGCACAATAAAAA         TAGCCCGATG GATTTAT CATCGGGCTG         AGATTTATGACAAAC  95 206
SH03_RS15050 3033738 .. 3033751 -  -2.4  -2.73701   TCCTATGAAATTAAT               TGCT GTTAAA AGCA                TTGGGTACAGAAAAT  41 17
SH03_RS15045 3032550 .. 3032561 -  -2.2   -2.7186   AAATGCCTTGAATCA                GCCT ATTT AGAC                 CGTTTCTTCGCCATT  40 61
SH03_RS15040 3029837 .. 3029853 -    -8   -5.4756   AATCCCAAGAAAAAA              CCAACC CTTAC GGTTGG              TTTTTTTATATCTGC 100 94
SH03_RS15020 3026356 .. 3026371 - -11.8  -5.06103   ATAAGTTGTAAAAAA              CCCCGC TCCG GCGGGG               TTTTTTGTATCTGCA 100 126
SH03_RS15005 NONE
SH03_RS15000 3022069 .. 3022086 -  -7.7  -4.26202   ACATGCATCAACAAA             GGAAGCC TTTT AGCTTCC              TCGTTGTGCAATAGA  79 41
SH03_RS14995 3021086 .. 3021106 -    -6  -3.37487   TTAGATCCTGAAACA            CGCCACCG TTATC CGGCGGAG            TTCTCTGGTGGTCAG  56 344
SH03_RS14940 3008192 .. 3008213 -  -2.9  -2.71712   CGCCGGGCTGGAAAT           CCCGACGAT GTTG ATTGCCGGA            TATTTCGCCAAACGT  41 385
SH03_RS14930 NONE
        fruK NONE
SH03_RS14920 3003209 .. 3003241 - -14.3  -3.72576   TTTGCGCTCATCAAA      TGTTACAGGACAGGA AAT TTCTGCCCTGTAACA      CACCTTTTATTACGC 100 35
SH03_RS14915 NONE
SH03_RS14910 3000894 .. 3000911 - -10.5  -3.54424   CTTCATGCCGGTAAA             CCCGGCG TCAG CGCCAGG              TTTTGGTATGCTTGA  80 75
SH03_RS14905 2999123 .. 2999145 -  -4.1  -3.57808   GTTAATCGATAAAGA          CCATGAACCG CGTG CGGTGCA-GG           CTATTGAAGAGTGTT  53 497
        rihB 2997730 .. 2997765 - -11.8  -3.96148   TCTGCCCATCAGAAA    TAGCCAGGCCTGCATC TTGC GATACCGGCCCGGCTT     GTTATCAACACTTAA 100 37
SH03_RS14890 2996324 .. 2996365 -    -8  -3.63569   CCAATGGTGTAACAA TGT-TGCCGGATGCGACGC TTAAC GCGTCTTATCCGGCCTACA AATCAGGCAATTTCA  70 87
SH03_RS14870 NONE
SH03_RS14865 2990554 .. 2990573 - -13.6  -4.75776   AATGGAATTGAAAAA            GCCCTCTC GGTT GAGAGGGC             TTAGCAAGGAAGGGA 100 47
SH03_RS14860 2988281 .. 2988303 -  -3.3  -3.76952   TTTACTGAAGTGAAA          GTCCGCCCGG TTCG CCGGGCAT-C           TTCTCATCAGAAGCG  53 32
        folE NONE
SH03_RS14840 NONE
SH03_RS14830 2984059 .. 2984070 -  -4.4  -4.08767   GTTACCTCGGCAAAA                GTGA TTAT TCAC                 TGTTACATACGGGTT  61 115
SH03_RS14825 2982851 .. 2982873 - -14.9  -3.88232   TTGGCCATACAATAA           GGGCGCAGT AATAG ACTGCGCCC           AATCAGTCTTATTTC 100 34
SH03_RS14820 2981158 .. 2981171 -  -2.3  -3.05384   TTGCCCGGCATCCAA               CGCCA TTCA TGGCC                ATATCAATGATTTTC  42 158
SH03_RS14815 2980539 .. 2980564 -  -6.1  -3.39772   TTAAAGGTGCAAAGA         CGCAAGACGCA GAAT TTCGTTTTGCG          TTGTTGTTTTTGTAT  59 111
        mglC 2979265 .. 2979298 -  -8.9  -3.10533   TTGTAAAACCAGAGA     CGCATCCGGCA TTTGGTTCCTGT CGCCGGATGCG      GCTTGAACGCCTTAT  69 225
SH03_RS14770 2971926 .. 2971965 -   -20  -2.71364   TCACTGGCGCAAGGA  GCGCGCAGGGGGCGGC CAATCGCC GCCGCCCCCTGCACCC   CCGGGCTCTGGCGAA 100 253
SH03_RS14760 NONE
SH03_RS14755 2969116 .. 2969130 -  -5.6  -5.06816   ACGCGGGAAGAAAAA               GCCGGA TCA TCAGGC               GTAAAACCATTGCCC  82 159
SH03_RS14745 2967752 .. 2967785 - -14.7  -2.84527   GAATCGTGAGGAAAT     GCTGCATTGCTGACA TTTA CGCCAGCAATGCAAC      GTCAAAGAACTTTCT 100 39
        pbpG 2966659 .. 2966687 -  -7.6  -4.74801   GAAGTGGAGTAAAAA       TTACGGATGGCAGA GTA TC-GCCATCCG-AA       TTCACTTAATCGTTC  91 31
SH03_RS14730 2962417 .. 2962435 - -12.4  -3.86015   TATCCGGCCTACAAA             GGGCGCAA ACG TCGCGCCC             TTACTAAAGCATTAC 100 37
SH03_RS14725 NONE
SH03_RS14720 NONE
SH03_RS14715 NONE
SH03_RS14710 2958302 .. 2958317 -  -3.2  -3.27923   GCCCAACAGCAGCAA              CTCACC AGTT GGCAAG               AACAAGGCCATGATA  47 208
SH03_RS14695 NONE
SH03_RS14690 2954981 .. 2954991 -  -3.2  -4.68593   TTGATGAGGCAAAAA                 GCCA TTT TAGC                 AGTCTTTTACAGGCC  65 32
SH03_RS14685 2954073 .. 2954099 -    -8  -4.29073   GAAGAATCGAAGAAA         TTCAGCGCCAAT CTG AACGGCACTGAA         ATTGCCATTACCTAT  76 407
SH03_RS14630 2935752 .. 2935784 -  -9.9  -3.80855   TGCGGCAAAAACTAA      TACACCGCATCAATG TAA CATCTCTGCGGTGTA      TGAAGAATAACCAGA  84 55
SH03_RS14625 2935208 .. 2935237 - -16.7   -5.5353   GATATCAATAAAAAA       GCCGAAATCATTT ATAT AAATGATTTCGGC        TTTCTAAATGCAATT 100 58
SH03_RS14615 2934378 .. 2934398 - -13.3  -4.54727   CCTCTTAAATTAAAA            GGCCGCCAT GGG ATAGCGGCC            ATGTTTATTACCTGG 100 62
SH03_RS14610 2933667 .. 2933679 -  -3.3  -3.07895   GTCATTCTCAACATA                GGCAG CTC CTGCA                ATTAAATTTTGTCAC  46 27
SH03_RS14605 NONE
SH03_RS14600 2930059 .. 2930079 - -11.1  -5.42259   TCATCGCTAAAAAAA            GCCCCCTCA TCA TGAGGGGGA            AATGCAGACACCTTG 100 81
SH03_RS14585 2928089 .. 2928100 -  -5.8  -2.72013   ACGTGAAGAAGCAAT                GACC TGGT GGTC                 CGTGACTTCCCTACG  52 204
SH03_RS14580 NONE
SH03_RS14575 2926465 .. 2926479 -  -3.5  -2.66008   AAAGCAGCTATAGTA               CGGTG CTCAC CACCA               GGCGTGGAAGTGGTG  44 17
SH03_RS14570 NONE
SH03_RS14565 NONE
SH03_RS14545 2920083 .. 2920104 - -13.7  -5.58209   TGAAAGGCAAAAAAA           CGGCCTCCC GATA GGGAAGCCG            TAGCAAAGTGCGCGT 100 188
        gatY 2919095 .. 2919116 -    -8  -2.71712   TTTTCCTTGTTAAAT           GGCAGGTGC GTTAT GC-CCTGCC           CTCGCAGCCACAATC  60 14
SH03_RS14535 NONE
SH03_RS14530 NONE
SH03_RS14525 NONE
SH03_RS14520 2915681 .. 2915691 -    -4  -3.26405   CTCAGGTAAAAATTA                 TTCT GCG AGAA                 CGACTTTCTCTTGTT  51 12
SH03_RS14515 2914561 .. 2914585 - -13.5  -3.21276   CTGTTTTGCACAATA          CCGGGCCAGCA TCA CGCTGGCCCGC          GGTTTCAGGGAATGA 100 30
SH03_RS14510 2914140 .. 2914150 -  -3.2  -4.24123   GGAACAATTTGAAAA                 CAAG AAC CTCG                 CTTAGGCCTGTGTCC  58 60
SH03_RS14495 2912399 .. 2912443 -   -13  -3.39595   TTGAACCAGGGAGAA TCCGTAATGCCGGATGCGGTG TAAA CACCTTATCCGGCA-TACAGA ACAATACTACACCGT 100 32
SH03_RS14485 NONE
SH03_RS14480 2910028 .. 2910045 - -12.7  -5.29782   CACATCGACAAAAAA             GCCCCTC GACT GAGGGGC              TTCCTGTTTCTAATT 100 472
SH03_RS14430 2895217 .. 2895238 -  -8.7   -2.7035   TTGATGCATAGACCA           GACGCCAGC TCAC ACTGACGTC            CAGCCTTTTGGCGCT  66 13
SH03_RS14425 2894430 .. 2894459 - -12.3  -2.73243   ATTTATTGTTTAAAC       TGGCGGTTGAA TTGTTGTC TTCAACCGCCA        TGAGAAACTCACTCT  88 34
SH03_RS14415 2891363 .. 2891389 -  -8.6  -2.70932   TCGTCTGCTTAACGA         TCTGGTACGCGA TGC CCGCGAACCGGA         AAAAGTGGCCCTGTT  60 432
SH03_RS14405 NONE
SH03_RS14400 2889420 .. 2889431 -  -3.6  -3.30124   CCCCAGGCCGGATAA                GGCG CTCG CACC                 GCATCCGGCGACCAA  49 43
SH03_RS14390 NONE
SH03_RS14385 NONE
SH03_RS14380 2882063 .. 2882075 -  -4.1  -4.72272   CCGCTGGATGAAAAA                CGTGA ATA TCACA                CCATTGCCGGGCTGT  70 466
SH03_RS14370 NONE
SH03_RS14365 NONE
SH03_RS14360 NONE
SH03_RS14355 NONE
SH03_RS14350 NONE
SH03_RS14345 NONE
        wcaD NONE
SH03_RS14335 NONE
SH03_RS14330 NONE
SH03_RS14325 NONE
SH03_RS14320 NONE
SH03_RS14315 2868507 .. 2868519 -  -6.2  -2.58861   CAGTATTTTCATAAT                CCGG GTACT CCGG                TACGCTTCTCAGCGA  54 6
SH03_RS14310 NONE
        cpsB NONE
SH03_RS14300 2864359 .. 2864387 -  -2.4  -3.14878   TGGGGTAAGGGAAGA        TCCGACATTACT CGTTC AGCAACGTCAGC        AGAGTTCGCGTTCGC  43 4
SH03_RS14295 NONE
SH03_RS14290 2861292 .. 2861338 - -15.1  -2.62463   CGTAGGACGGATAAG GCGTTCACGCCGCATCCGGCA TTCAG TGCCTGATGCGACGCTGACGC GTCTTATCAGGCCTA 100 124
SH03_RS14285 NONE
SH03_RS14280 2858671 .. 2858683 -  -5.5  -3.85698   GTTCTCCTCTATAAA                GCCTG CAG CAAGC                TGGCGAGTTCTCGAT  61 6
        wcaM NONE
SH03_RS14270 2856096 .. 2856151 - -18.7  -4.52857   ATGGTTTATATAAAA CAACGGCAG-GAAGATTCGCAACAAA TTACT TTTGCTGCGAATTTTCACTGCCGTTA TAATTTTCTTATCAA 100 65
SH03_RS14265 NONE
SH03_RS14260 2853799 .. 2853823 -  -2.2  -2.52543   ATTCCTTTTAATTCA          TCTTGCTC CACCATCAC GAACAAGA          TGCAAAAACTATTAA  39 37
SH03_RS14255 NONE
SH03_RS14250 NONE
SH03_RS14245 NONE
SH03_RS14240 NONE
SH03_RS14235 NONE
SH03_RS14230 NONE
SH03_RS14225 NONE
SH03_RS14220 NONE
SH03_RS14215 NONE
SH03_RS14210 2844230 .. 2844244 -  -2.8    -4.323   GCTAAATATCTAAAA               GTACTT TTT AAGTGC               CATCTGAAGGCTTTT  59 434
SH03_RS14205 2842570 .. 2842592 - -11.2  -5.75945   ATTTGGCAAAAAAAA           GCCCGGTGCA ATA TACGCCGGGC           CTCAATTTTATTGTT 100 53
SH03_RS14200 2841174 .. 2841194 -  -8.3  -4.09554   AGTAACAAAAGACAA            TCAGGGC GTAAATA GCCCTGA            TAACAAGATGTTAGT  79 36
SH03_RS14195 2840032 .. 2840057 - -11.1  -5.41143   CATCCGGCAAAAAAA         CGGGCAAGGTG TCAC CACCCTGCCCT          TTTTCTTTAAAACCG 100 47
SH03_RS14150 NONE
SH03_RS14145 2831983 .. 2831999 -  -8.1  -3.53184   TATCAAAACTGACAA              TTCATTC TAT GAATGAA              TCTGTTCAATAATGA  68 31
SH03_RS14140 2831056 .. 2831079 -    -3  -2.87344   CAGTGGTTTCATACA          CGCCCCCTTGC AGT GCATGCGG-CG          TCCTGCTGGCGTGAT  43 44
SH03_RS14135 2830014 .. 2830034 -    -9  -4.72473   TGAAGCAAAAAATAA            CCGACGCT GATGA AACGTCGG            TTTTTAGTCATTTTT 100 114
SH03_RS14130 2828450 .. 2828477 - -12.8  -6.04419   AAAAGAATAAAAAAA        CCGGAGCCAAAT GTTC ATTCGACTCCGG         TTTATTATTAGAAAA 100 46
SH03_RS14125 NONE
SH03_RS14120 2826569 .. 2826584 -  -3.2  -4.08064   AATTCTGCGTGAAAA              TCCGCA AGTG CGCGAA               AAAGTGGTGGCGATA  58 461
SH03_RS14110 2824141 .. 2824156 -  -3.2  -2.80113   GATTATGCGAGCAGA              CTCGCA CTCC TGCCAG               TCTGCTGCAAAAGAA  43 44
SH03_RS14105 2823470 .. 2823492 -  -6.3  -3.92373   TATCCGACGGACAAA           CCGGGAA CAGTGTAAT TTCCCGG           CAGGAGCGAAAAAAT  67 116
SH03_RS14100 2822311 .. 2822325 -  -2.8  -2.78495   GCAGCAGCAAGATGA               TTCTGA AGT TCAGGA               ATTATTTGCGCAAGG  42 27
SH03_RS14095 2821783 .. 2821813 -   -17  -2.91042   GATAAGAATCAATGA       GCAATGAGGGTTGC CGG GCAACCCTCATTGA       ATAAAACGGGAATTA 100 38
SH03_RS14035 NONE
SH03_RS14030 2811539 .. 2811555 -  -6.5   -3.4409   AACAAAAATCAGCAA              CGAAGAG ACG CTCGTCG              TGACCACGAATCGTT  61 216
SH03_RS14025 2810086 .. 2810098 -  -3.3  -3.22476   ATGACTCATGATGAA                CCCTG TTC CATGG                CTCCAGATGACAAAC  46 149
SH03_RS14020 2808606 .. 2808616 -  -3.2  -3.97511   CATTGAACAGAACAA                 TGGA TCC CCCA                 CCGTTGCTGACCGCA  56 508
        cobU NONE
        cobS NONE
        cobT 2806143 .. 2806161 -  -3.1  -3.54424   TCCTATGTCGCGAAA             GCTATCC GTTAA GTATAGC             TTTTATCAGACTTTT  49 46
SH03_RS13995 2805141 .. 2805158 - -11.3  -5.22039   GCCAAATTCAAAAAA             GCCTGCT TTCT AGCAGGC              TTTTTGCTTTCTAAT 100 52
SH03_RS13985 NONE
         cbl 2802734 .. 2802750 -  -9.4  -3.07283   CAAATTCCTGAAAAG              CCCGCT TTTAT AGCGGG              ATTTTTGCTATATCT  72 33
SH03_RS13970 2800898 .. 2800909 -  -4.4  -3.35278   TGAACTACAGAGGAA                TCGT GAGA ACGA                 GGCGAATATTAGCGA  51 113
SH03_RS13965 2800730 .. 2800758 -  -9.6   -5.4387   ACAGAAATCAAAAAA        CCCGGTCACTTT TTTAC AAGGTAACCGGG        TAAAAATAATTTTTA 100 88
SH03_RS13945 2794831 .. 2794852 -  -4.3  -3.58533   TTATAATTTCTTAAA           GAGTGTTCC ATTC GGGGCACTC            TTTTTTACATTCCCT  54 243
SH03_RS13925 2785755 .. 2785767 -  -7.7  -3.07307   TAAATGTTTACGCAA                GTGCA CAA TGCAC                CCTTTCCACTATCAA  59 520
SH03_RS13890 NONE
SH03_RS13885 2779119 .. 2779131 -  -4.8  -3.59979   TTGGTTTACCTGAAA                GCCA GGACG TGGC                TGCCGCTTTACAGTG  55 482
SH03_RS13875 2777922 .. 2777960 -  -6.9  -4.16909   ACTTCAACAAAAACA  TGTCCACCTATGTTGATT ACAA AATCAACCT-GCTGGACA   ACGACGATGACTTCT  72 103
SH03_RS13860 NONE
SH03_RS13855 NONE
SH03_RS13850 NONE
SH03_RS13845 NONE
SH03_RS13835 NONE
SH03_RS13830 2770941 .. 2770965 - -16.5  -2.83164   GCAGGCATTAGCACA          CCAGGCCGGAT GTG ATCCGGCCTGA          TGTTAATGATACCCT 100 42
SH03_RS13825 2768920 .. 2768944 -  -8.6  -3.65827   CAATTGTCAGGCAAA         CGCCCA-ACCA CACT TGGCCTGGGCG          ATGGGCCAAACGATG  69 198
SH03_RS13810 2767388 .. 2767421 - -13.9  -3.04248   CAACATGCGCTAACA     CATTCTGACTGGTGG TTTC CCACCAGTCAGGCTG      AATAAGATTACTCTG 100 33
        fliE 2755481 .. 2755496 -    -4  -3.82604   GGATGTAATTAACAA              CAGGTT ACAA AACCTA               CACCTGCATGCTCAT  57 23
SH03_RS13725 NONE
SH03_RS13720 2754031 .. 2754041 -  -5.4   -2.7898   TTTAATATTTAATTA                 TGAG TTC CTCA                 CCATCTATTACATAC  50 1
SH03_RS13695 2750443 .. 2750463 -   -14  -2.66272   GGTGATTTAAATTCA            TCCCCGGC GGCAA GCCGGGGA            GATTTCATTACGGCA  95 33
SH03_RS13670 2744713 .. 2744729 - -15.1  -5.64274   CCAGGCAGAAAAAAA              CCCCGCC GGT GGCGGGG              AAGCACGTTGCTGAC 100 200
        fliA NONE
SH03_RS13660 NONE
SH03_RS13655 2742341 .. 2742358 -  -8.4  -5.63517   CGCGTAAATAAAAAA             GGCGCT AGTGAA AGCGCC              CTTTTTTGTCATTAT 100 46
SH03_RS13650 NONE
SH03_RS13645 NONE
SH03_RS13640 2739667 .. 2739684 -  -3.5  -3.38272   GAGTATCATTTATAA             TGATAAT TCAA ACTATCA              CATAAATAAGATTTA  49 197
SH03_RS13635 2738844 .. 2738870 - -12.3  -4.70583   GTCAGTAATATAAAA         CCGGCTGATAG CGTGC CTTTCAGCCGG         TTTTTGCATCTGGCA 100 59
        sirA NONE
        uvrC NONE
SH03_RS13610 2735060 .. 2735072 -  -4.1  -3.60431   AAAATTACGCCGAAA                CGATC ACT GATCA                AGCAAATCTGCACGC  54 16
SH03_RS13605 NONE
SH03_RS13600 NONE
SH03_RS13595 2734549 .. 2734562 -  -8.1  -5.64274   GCAGGCACAAAAAAA               CCACC CGAA GGTGG                TTTCACGACACTGCT 100 72
SH03_RS13590 2733703 .. 2733744 -  -5.1  -2.75819   CAGATAGCCTCAAAT TCCTTATTGGGTGCCAG AATTAACG CTGACACCCAATTTGGC  CTCTTAATGCAGGCA  50 29
SH03_RS13580 2731934 .. 2731944 -  -6.8  -3.61988   TTATTGATAAATTAA                 GCCT GGC AGGC                 AAAAGCGGCGAAGGT  63 126
SH03_RS13560 2730268 .. 2730295 - -13.5  -3.86822   GAAGGTTTTGAGAAA        CCGCTGCCTCA TCTGTT TGAAGCAGCGG         TTTTTTTAATGGGAT 100 31
SH03_RS13550 NONE
        araG 2726357 .. 2726367 -  -6.8  -3.07816   TCCTTACTCAGGCAA                 CAGC CTG GCTG                 ACTTTAGGCATCGCA  59 7
        araH 2725286 .. 2725307 - -11.6  -3.49048   TTGCAACGAAGAACA           GCCAACCG TTATGG CGGTTGGC            TATGGTGGGAAAAAA  89 66
SH03_RS13535 NONE
SH03_RS13530 2722613 .. 2722626 -  -2.3  -4.08692   CAACTGCTGGCAAAA               GCGGT ATCT ATCGC                CAGGCCAGTAAAGGG  56 381
SH03_RS13520 NONE
SH03_RS13515 2720786 .. 2720809 - -12.5  -5.75342   TTGGGGCAAAAAAAA          GCAGCGGTA CGTCGT TACCGCTGC           TGGAATGTTGCGCCT 100 52
SH03_RS13510 NONE
        motB NONE
SH03_RS13500 NONE
SH03_RS13495 2716357 .. 2716377 -  -8.3  -5.67283   AATTGAAATAAAAAA            CCCGATG CGCAGAT CATCGGG            TTCATTTCAATTGAG 100 54
SH03_RS13490 NONE
SH03_RS13485 2712926 .. 2712955 -  -2.1  -2.90763   CCCACAGGGCAGAGA       TGAAGTCATAGCG CCTT CTCAATCACTTCA        GGATACCACTGGCGC  42 23
SH03_RS13480 NONE
SH03_RS13475 NONE
SH03_RS13470 NONE
SH03_RS13465 2709921 .. 2709956 - -13.4  -2.78596   CATCGCCTTATCAGA    CCGCCTGATATGACGT GGTC ACGCCACATCAGGCAA     TACAAATCAAAATCC  93 32
        flhB NONE
SH03_RS13455 NONE
SH03_RS13450 2705773 .. 2705783 -  -6.8  -3.92996   CGTTATATAGAACAA                 GTGC CAC GCAC                 AGGTGTAAAAAAACC  68 392
SH03_RS13435 NONE
SH03_RS13430 2702018 .. 2702042 -   -10  -5.64274   TCAGGGATAAAAAAA          GGCCCCTG TTGAAATTG CAGGGGCC          TGGTACGAGCAAGCA 100 73
SH03_RS13425 2700596 .. 2700614 -    -3  -3.14132   TTCCTCCCTGATCAA             CGAGGATC ACT GTTTCTCG             GTAATATCTTTGGCG  46 13
SH03_RS13420 2697820 .. 2697832 -  -9.1  -2.87132   GTGGTTTTGTAGATA                TCCGC ATT GCGGA                TGTGAGCGTTACCAC  65 341
SH03_RS13390 2692291 .. 2692306 -  -3.2  -3.05384   GCCGCCTCGATGCAA              CGCGAA TGAT TTCGTG               TATTTGAGTCATATC  44 39
        nudB 2691727 .. 2691738 -    -3  -4.83615   GACCTGCCATAAAAA                TATC TCCA GATA                 GCCCTGCCTGTTCAG  68 37
SH03_RS13380 2690988 .. 2690998 -  -6.8  -2.94218   AGGCCTCATCAGAGA                 GTCG CTG CGAC                 CTCATCAGAGATTTC  58 8
        ruvC 2690392 .. 2690417 - -10.4  -3.61178   CGGAGGGAGTGGAAA         CGCCTCAGCC GGAACT GACCGAGGCG          GTATAACTTAACGCA  82 33
        ruvA NONE
SH03_RS13360 2687861 .. 2687899 - -11.7   -3.0976   GGTAAGACGCGAACA   GCGTCGCATCAGGCA TATTGCCAG TGCCGGATGCGGCGC   GAGCGACCAATCCGA  84 42
        znuA NONE
SH03_RS13340 2683844 .. 2683866 - -10.6  -5.99154   CACCAAATAAAAAAA           GCCGGTAC TGACTGC GTACCGGC           TGCGAATGGATGTTA 100 42
SH03_RS13335 2682665 .. 2682703 - -13.9  -2.81725   ACGGTAGAGTAAGTA  CGTTG-CCGGATGCGGCG AAAA CGCCACATCCGGCCTACA   GTTCAATGATAGTTC  95 114
SH03_RS13320 2680018 .. 2680033 -  -5.4  -4.15565   GCGATTACGGGAAAA              GCGCGCA AAG TGCG-GC              AAAACTGATAAAAAA  65 42
SH03_RS13315 2678304 .. 2678329 - -11.2  -5.80364   AGTGTAATAAAAAAA         GCCTCGTG-GG TGAAT CCGCACGAGGC         CTGAAAGTGTAAAAA 100 105
SH03_RS13310 NONE
SH03_RS13305 2675655 .. 2675675 - -15.5  -4.90296   AAAACGCTACAAAAA            TGCCCGATC CTC GATCGGGCA            TTTTGACTTTTACAG 100 35
SH03_RS13295 NONE
SH03_RS13290 2673556 .. 2673567 -  -3.6  -3.28712   TTCTGGGGCGGACAA                GGCA CTCG CGCC                 GCATCCGCCAACAGT  49 62
SH03_RS13280 2672612 .. 2672626 -   -10  -2.91582   CAGGCTATCCAGAGA               GCGGAA TTA TTCCGC               CAAAGTGCGTTTTTG  73 17
SH03_RS13275 2670167 .. 2670193 -    -5  -3.32844   GGCTGGACGGCAGAA         CAGATGGCCGAT ATC ACCGGACGTCCG         TCGTTGATGACGACC  51 181
SH03_RS13255 NONE
SH03_RS13250 NONE
SH03_RS13245 2666869 .. 2666898 -  -5.1  -4.70879   CTGAAATGTTAAAAA      CCGCC-C-GTTCT GGTGAA AGAACTGAGGCGG       TTTTTTTATTGGAAA  73 62
SH03_RS13240 2666681 .. 2666707 -  -8.8  -4.16832   TAACAGATAAAAAGA         GACCGAACAC GATTCCT GTATTCGGTC         CAGGGAAATGGCTCT  83 82
SH03_RS13235 2665598 .. 2665614 -    -5  -4.44608   CTGATCCAAAAAGAA              CCCGTC GGCAT GGCGGG              TTATTTGTCCTGGTT  68 294
SH03_RS13205 2659154 .. 2659173 -  -6.4   -3.1552   GCGCAGGCATGAACA            GGCGTCAT TATA ATGACGCT             ATCAGTAAATGCTAC  57 53
SH03_RS13200 NONE
SH03_RS13195 2656308 .. 2656331 -   -14  -5.00616   GTCGCTGTTAAAAAA          TCAGGCACAA TTTC TTGTGCCTGA           TTGATATTACTTGAC 100 32
SH03_RS13190 2655225 .. 2655244 - -10.7    -5.626   CAGGGCATAAAAAAA            GCGCGTC GATCAG GACGCGC             TTTTTAGTATTTACT 100 46
SH03_RS13180 2652838 .. 2652868 -  -6.9  -4.44046   CTCATGCTAAATAAA       GAACCTGTCTG TTTGATATT CCGACAGGTTC       TTACTCTCATCAGAA  76 35
SH03_RS13170 2652191 .. 2652205 -  -2.8  -3.37655   GTGCTGAAAAAATGA               TATCAC CAC GGGATA               AACTGGTTAATGGCA  46 13
SH03_RS13165 2651786 .. 2651817 -  -9.6  -3.25729   TATAATCAGGATGAA      TTGAGTAAC-CCTTC AAC GACGGGGTTACTCAA      GATTGAGGAAGGATT  74 39
SH03_RS13155 NONE
SH03_RS13150 2650729 .. 2650747 -  -8.1  -4.85177   AAAGCATAGTAAAAA             GCCTCGC ATTCG ACGAGGC             TTTATAGCGAGATTG  91 74
        rrmA 2649552 .. 2649568 -  -7.9  -2.55437   GATGAAGATGAAGAG              CCGCGCC GTC GACACGG              TTTCTGGCTACTGGT  56 278
SH03_RS13110 NONE
SH03_RS13105 2643524 .. 2643558 - -14.9  -3.54424   CGTGATTTTCCCAAA     TGGCTGGCGGGCAGC CAACC GCCGCCCGCCCGGCA     TAATGGACATATCAC 100 66
SH03_RS13080 2637800 .. 2637818 -  -3.2  -3.17723   GCACGGCGAAGGGAA             TCTTTAAA TAT TTAAAAGA             ACTGGGAGTACCCGC  45 329
SH03_RS13065 NONE
SH03_RS13060 NONE
SH03_RS13055 2633475 .. 2633499 - -14.4  -2.66106   TACCGTAAGAATGCA          GAAACAGCGG ACCAG CCGCTGTTTC          TTTTTCTTTAAAAAC 100 47
SH03_RS13050 2631594 .. 2631610 - -10.8  -5.75342   GGGCGTCAAAAAAAA              CGCCGG ATTAA CCGGCG              TCTGACGACTGACTT 100 46
SH03_RS13045 2630253 .. 2630263 -  -3.2  -3.57561   GCGGAACCTGCGAAA                 CAGC AAT ACTG                 GAAGGTGAAGCTGAC  51 196
SH03_RS13020 2624414 .. 2624429 -  -7.6  -4.64846   TTAGAAAGGAGAAAA              TCAGGT TTTA ACCTGA               TATCAACCCGATAAT  86 52
SH03_RS13015 2623659 .. 2623669 -  -2.4  -2.96395   AGGGAGGATTATAGA                 TGGG AAG CCCG                 CGACAACGCGGGCTG  42 47
SH03_RS13010 NONE
SH03_RS13005 2622983 .. 2622997 -    -5  -2.82529   GATAATTACCAACCA               CAAACA TCA TGTTCG               TTTTCCGTGTCATAA  49 1
SH03_RS13000 2622538 .. 2622563 - -13.4  -3.08056   ACCTCTAAAAAATAG         CAAAGGCTGC CTGTGT GCAGCCTTTG          TGCAATTTAAGCGTT 100 39
SH03_RS12985 2620775 .. 2620799 -  -6.5   -5.1675   CTACTCAGCAAAAAA         CACCA-CGCA GAACCA TGCGCTGGTG          CTGGCCGACTGGCTA  86 74
SH03_RS12970 2617886 .. 2617897 -    -3  -2.80464   GCAGCAAGCGTAAAG                TAAG CAGG CTTA                 TTATTTTTTGGCAAG  43 453
SH03_RS12960 2617162 .. 2617178 -  -2.1  -3.64236   ACTGAAATGGCTAAA              GGAAGCG TGA CGCATCA              GCGGTTAATCGCTTT  49 495
SH03_RS12930 2609244 .. 2609260 - -13.7   -4.2803   CACCGTAATGCAAAA              CAGGGCG TGA CGCCCTG              TTTTTATGCACAAAA 100 61
SH03_RS12925 2608309 .. 2608356 - -19.4  -2.56046   CGAAACGTTAATTTA CGTTAATGTTGTGTGCCGGGTGC AAT GCATCCGGCACACAACATCA-CA CCATATCCAGCGCAG 100 21
SH03_RS12910 NONE
SH03_RS12905 2604980 .. 2605013 - -12.7  -2.95341   AGGTCAACATTAAAT     CTGTAAAACACAGAT AATG ATCTGCGTTTTACAA      CTCAGATCACAATTA  93 284
SH03_RS12900 NONE
SH03_RS12895 NONE
SH03_RS12890 NONE
SH03_RS12885 NONE
SH03_RS12880 NONE
SH03_RS12875 2598455 .. 2598474 -  -2.2  -2.85351   TCTTTTTACATCACA            TTAGCGCGA TTA TCGCA-TAA            CCGATGTTTACTTTC  41 112
SH03_RS12870 2597583 .. 2597604 - -10.9  -2.57261   TAAAAAGGTAGCAAT           TGCGGCAAA TTCA CTTGCCGCA            TCTTTATCATCATTT  76 87
SH03_RS12865 2595834 .. 2595846 -  -4.7  -3.28712   TGCCTTTTTTGATAA                CGGCC GTC GGCAG                AAAACCTCTCTCGAT  51 370
SH03_RS12840 NONE
SH03_RS12835 NONE
SH03_RS12830 NONE
SH03_RS12825 2588498 .. 2588528 -    -7  -5.81412   TCCATGCAAAAAAAA       TATCCAACGAAT TTTCTTG ATCCGCTGGATA       TTTCAGAATATGACT 100 66
SH03_RS12820 2587294 .. 2587319 -  -8.3   -2.7644   ATTTAAGTTGTAAAT         GCCTGAT-GGCG CTA CGCTTATCAGGC         CTACAAATGGGCACA  64 107
SH03_RS12810 2585191 .. 2585207 -  -3.6  -2.84051   CGAGCCGGATGAAAG              TCAGCG GCAGG CGCTGG              TGCGTGAGTTACGCG  45 251
SH03_RS12800 2584302 .. 2584317 -  -4.6  -5.09895   CAGCGATCCAAAAAA              TCCGGT AGCA ACCGGT               GAACGCGGCCCGGAC  81 61
SH03_RS12750 NONE
SH03_RS12745 NONE
        astD NONE
SH03_RS12735 NONE
SH03_RS12730 2569495 .. 2569520 - -16.3   -3.2827   AAGAAAGCAACTTAA         TACCCGCAGAA TGAT TTCTGCGGGTA          AGTATTAGCTTATTT 100 30
SH03_RS12725 2568636 .. 2568686 - -19.8  -5.26907   GAAGAGAAAAGAAAA CCGCCGATCCTGTCCACCGCATTA CTG CAAGGTAGTGGACAAGACCGGCGG TCTTAAGTTTTTTGG 100 49
SH03_RS12720 2567688 .. 2567702 -  -5.6  -3.22774   GAGAGCCATGAGGAA               CATGCG CTA CGCTTG               CGCCAGTCTCTGGAG  52 255
SH03_RS12710 2566753 .. 2566769 -    -3  -4.74103   TCTGGAAGGGAAAAA             CGTACCT CAAC AGGT-CG              CCAGAACAATAGAGA  71 80
SH03_RS12700 2565438 .. 2565453 -  -7.5  -5.78622   TCAGGCCAAAAAAAA              CCGGC GCAATG GCCGG               TTTCCGTTGTTACTC 100 60
SH03_RS12695 2564804 .. 2564823 -  -7.9  -4.62904   AAATACCCTTAAAAA            CCGCAAT TTAAAT ATTGCGG             TATTGATTTATGAAA  86 71
SH03_RS12690 NONE
SH03_RS12685 NONE
SH03_RS12680 2562133 .. 2562145 -  -3.3  -4.14627   CCCGGACATAAATAA                TCCAG CAA CAGGA                CAGATATGTGAATTG  58 55
SH03_RS12675 NONE
SH03_RS12670 2559912 .. 2559945 -  -5.9  -3.39895   CTTTGTAGGAATTAA     TCGCCGGATGCAAGG TTCA CGCCGCATCTGGCAA      ACATCCTCACTTACA  57 36
SH03_RS12660 2556961 .. 2556979 - -12.4  -3.06796   TTTCAGGTCATGTAA             CTCCCGGC AAA ACCGGGAG             GTATGTAATCCTTAC  93 37
SH03_RS12655 2555535 .. 2555545 -  -8.2  -3.30619   AACCATTGGTCAGAA                 CGGC TGC GCCG                 GTTTGTATCCGGCAA  65 379
SH03_RS12635 2552244 .. 2552260 - -10.8  -2.64099   TGGGTTGAGGATAAT              GGCCGC TCCGT GCGGCC              TTTTGATTAAATAAA  76 32
SH03_RS12615 2548862 .. 2548886 - -12.1  -3.25317   TGACAAACGAAGACA          GCCAGACCGCA TAA CACGGTCCGGC          AGATAATTTTACATG  89 34
        thrS NONE
SH03_RS12595 2543621 .. 2543648 - -14.2  -4.23707   ACAAAGGCGAACAAA        GCCTGTGAAGCC CGAA GGCTCCACAGAC         AGTGCTACTTGAAGG 100 43
SH03_RS12590 2543354 .. 2543368 -  -2.9  -4.87291   TATTCTAATTAAAAA               GTTAA AAACG TTAAC               GGCTTATGCGTACGG  67 29
        rplT 2542933 .. 2542951 - -10.3  -4.54727   GCGTTGAAACGAAAA             GAGGGAG ACTAG CTCCCTC             TTTCAACTGGCTTAT 100 37
SH03_RS12580 NONE
SH03_RS12575 NONE
        pheT NONE
        ihfA 2538791 .. 2538805 - -12.8  -5.80951   AGTGAAAAGAAAAAA               GGCCGC AGA GCGGCC               TTTTTAGTTAGATCA 100 43
SH03_RS12560 NONE
        btuE NONE
SH03_RS12550 2536371 .. 2536383 -  -2.7  -3.07895   CCGATTTTCAAGATA                CTAAT GAA ATCAG                ATGGTCGAAATCAGC  44 22
SH03_RS12545 2535799 .. 2535825 -   -21  -3.79747   GTATTCAGGAGTAAA         TGGACGGCGATG TAT CATCGCCGTCCA         TTTTTCGACATACTA 100 38
SH03_RS12540 2534809 .. 2534821 -  -3.3  -3.55261   GGGTAACAAAAGACA                GGGTC ATA GATCC                TCCTGTTTGATAGTG  49 82
SH03_RS12535 2532868 .. 2532896 -  -3.9  -3.73402   ATATTTGTCAGCAAA       TCC-GCAATGGC TCTACG GCGATTGCTGGA        ATTATGGCGGAAAGT  56 508
SH03_RS12515 2530722 .. 2530733 -  -2.2  -3.86822   GAACGGTTTGAGAAA                CACA TTTC TGCG                 CATTTATCTTTGCAT  51 29
SH03_RS12510 2528273 .. 2528297 - -16.4  -3.54475   TCGGGGATCACATAA          CCCCGGCGAC TAAAC GCCGCCGGGG          ATTTATTTTATTTCT 100 33
SH03_RS12480 2522905 .. 2522937 -  -6.3  -4.90869   ATGAGCAAGCAAAAA      CAATATATGCCGGAT AAA ATACGGCGTGTATTG      CGGTTATACAACCGC  80 63
SH03_RS12475 2521920 .. 2521960 -  -8.3  -3.16387   ATCAGAACAAATAAT CTGCAGGCGGCGCAGCTT CTTAAC AAACTGCGCCGCCAG-AT  TTATCCAACAAGACT  67 26
SH03_RS12430 NONE
SH03_RS12425 2508717 .. 2508748 - -12.4  -3.31726   CGCTTTTAGACAAGA      CCTGCACAGTATAC CACC GTTTACTGTGCAGA       TAATGACCAAAAGCA  95 70
SH03_RS12420 2508250 .. 2508280 -   -17  -5.05116   TCAGAAATAAGAAAA       CCCTTAAGTCTGTG CGA CACAGGCTTAAGGG       TTTCTACCCCATCCG 100 250
        sufA NONE
SH03_RS12410 NONE
        sufC NONE
SH03_RS12400 NONE
SH03_RS12395 NONE
SH03_RS12390 2502394 .. 2502412 -  -3.9  -3.60627   GCAGGTCAGTGTAAA            CATTGACC ATCC GG-CAATG             TGAGCCAACCGGATG  53 58
SH03_RS12385 2501250 .. 2501268 - -14.6  -4.74103   CTGTGAAGTGAAAAA             TGGCGCAC ATT GTGCGCCA             TTTTTTTTGTCTGCC 100 49
SH03_RS12370 2498470 .. 2498498 -   -14   -3.4945   ACTGAAGCAAGAATA        TCAGGATGAAGC TTACC GCCTCATCCTGA        ATGGTCATTTTACCA 100 30
SH03_RS12365 NONE
SH03_RS12360 NONE
SH03_RS12355 2494646 .. 2494662 -  -5.2  -3.54129   GACATCTCCCTGAAA              TTTCAG GGGTT CTGAAA              CTGCTCTACCTCGAA  57 11
SH03_RS12350 NONE
SH03_RS12345 NONE
SH03_RS12340 2492095 .. 2492112 -  -4.9  -4.62002   AGCAATTACAGAAAA             CAGGGGAT GAA ATCCC-TG             ATGTTGGCGAAGATT  72 231
SH03_RS12315 2488411 .. 2488434 - -13.9  -3.96841   CGCTAATAAAGACAA          GGCGCAACC TTCACG GGTTGCGCC           TGTATTTTTACGCAG 100 33
SH03_RS12305 2486134 .. 2486148 -  -4.2  -3.53224   GAGTGGCTCGCTAAA               GGCTAT TCT ATCGCC               CCCTCTCCGGGGGCG  52 49
SH03_RS12290 2481940 .. 2481952 - -10.5  -3.06796   CGTTATCTGATTGAA                CGCGG TCA CCGCG                AAATCGGCGTCATCC  72 510
SH03_RS12280 2480944 .. 2480978 -    -3  -4.96276   ACAAAAAAATGAAAA     TAACAAAAAGAGAAAA CAC TTTTGCCATTTTGCTA     ACAAACAGGAAGGAG  71 74
SH03_RS12275 2479613 .. 2479630 -  -9.1   -2.5955   AGGTCGGATAAGGCA             CTCGCCG CATC CGGCAAG              ATAAATCGCACGTTG  66 87
SH03_RS12260 2477283 .. 2477310 - -15.7  -3.09116   GGGATAGAGAAAGGA        CTGACGGATGC CCGTTC GCATCCGTCAG         TATTGCAGGACGGAT 100 40
SH03_RS12230 NONE
SH03_RS12225 NONE
SH03_RS12220 2467610 .. 2467633 - -10.2  -2.52516   CCCGTCATCATCAAC          CTGCCGCCCG TGAG CTGGCGGCAA           TTGTCTGGCGGCTGT  65 97
SH03_RS12200 2463919 .. 2463954 - -11.8  -3.90744   CTCCGCGCTAAATAA    GTTTGCGTGTGGTCAG GTTA CTGACCACACGCCCCC     TTCATTTCACCCTTT 100 32
        anmK 2462048 .. 2462061 -  -2.4  -3.63367   CGCGGTAAGAAAAAT               TCAG TTAACT CTGA                TATCACGGGTTAGCG  49 28
SH03_RS12185 NONE
SH03_RS12180 2460903 .. 2460915 -  -3.4  -3.77196   GTACCAGCGATTAAA                GCAA GATTT TTGC                ATCTTTTCAGGGTGC  53 32
SH03_RS12175 2459477 .. 2459506 - -10.7  -4.82901   TTCCCTGTATAAAAA       CCAGGGGGAGTGA TTTC TCACTCCCCCTTT        CCACTTAATGCATTA 100 38
SH03_RS12170 2458228 .. 2458238 -  -5.4  -4.36914   TTTCCCGCTATAAAA                 CCAT CGA ATGG                 CTGAATTACATCGCC  70 384
SH03_RS12100 2446806 .. 2446839 - -15.5  -3.33696   GTCGCCGCGAAGTAA     CAAAATGGATGGTGC AAAT GCACCATCCATTTTT      CATGCAAGGCACAAA 100 25
SH03_RS12080 2441645 .. 2441661 -  -5.1   -5.3104   TCAGTAAAAATAAAA              GGCAC CGCCTGT GTGCC              ACATTTTTTATCATT  84 87
SH03_RS12075 2440697 .. 2440708 -  -5.8  -3.01924   CATTGCTGTTGAATA                GTGC GAAG GCAC                 ACTCTATTCGTATAC  54 161
SH03_RS12070 2439864 .. 2439879 -  -5.4  -3.72078   CCATAAAATAAGCAA              CCGAAC GTTC GTTCGA               GCGTATTGGGAACGA  59 179
SH03_RS12065 NONE
SH03_RS12060 NONE
SH03_RS12055 2435126 .. 2435149 - -13.9  -3.72051   GTCAACAATCTGAAA          CGCCGGAGA TTTTTC TCTCCGGCG           TTATTTTTTACTTCA 100 33
SH03_RS12040 2430280 .. 2430295 - -11.8  -5.47218   TGCCATGTAAAAAAA              CCGCCC CGAA GGGCGG               CTCTGTTTATTTCAC 100 32
        fumC 2428666 .. 2428695 -  -4.3  -3.55444   TGGTGAGTTGTTAAA       TTACGATGCCG-AC AAT GTGCAGCACCGTTA       TAAACCTCAGGCGCA  53 86
SH03_RS12015 2425183 .. 2425203 -  -8.3  -4.06419   CCTGGCGAGAAAGAA            GTGATCGAC CTG GTCGATTAC            TTACTTACCAGTTGC  77 88
        pntA NONE
        pntB 2418515 .. 2418540 - -13.3  -3.69068   CGATCTCAATAAAGA         GTGACGGCCTC AGCA GAGGCCGTCAG          GGTTACAGAGCTTTC 100 28
SH03_RS11980 NONE
SH03_RS11975 2416361 .. 2416384 - -15.3  -3.65722   AAAATAATGTTCAAA          CGCTGCCCG ACAGCG CGGGCAGCG           TCTTCATCAGGCAAG 100 32
SH03_RS11950 NONE
SH03_RS11945 2410838 .. 2410858 -  -3.3  -3.16345   AACCAGGAAAATAAT            TAACCTTGA AAG TCTAAGTTA            TGCTTTCCTGGCCCA  46 82
SH03_RS11940 2410027 .. 2410051 - -15.8  -2.93585   TGATATGTGAAATGA          CCGGGGAGTA TCAGC TACTCCCCGG          TTTATTGATTGCCTG  95 69
SH03_RS11900 2400023 .. 2400045 -  -8.4  -2.89565   AATTTCAGATAATTA           TCTCCCCGGA GTA TCAGGGGAAA           GGTCTGGCAACCCGT  61 298
SH03_RS11885 2398818 .. 2398831 -  -2.3  -3.99153   TGATCACAAAAAAAG               GCGTA TATT TGCGC                TGTGAATGGTTGACA  53 112
SH03_RS11880 NONE
SH03_RS11875 2396037 .. 2396056 -  -4.2    -4.431   GACGCAGCGATAAAA            CG-TGCCGG ACT CCGCCATCG            AAAATCATATCAGTC  66 436
SH03_RS11860 2393707 .. 2393729 -  -9.9  -2.86049   CAACAAGGGAAGAAG          GCGCTGTGGC TGTA GCCACAGC-C           ATTGAAGCTGGCGAC  72 164
SH03_RS11845 2392262 .. 2392287 -  -7.5  -4.24963   CACAATCATGGAAAA         GGCTTACGAAG AATA CTTCGAAGGCC          TTGCCGAAGGCGAAG  75 354
SH03_RS11825 NONE
SH03_RS11820 2390536 .. 2390573 -  -4.2  -3.24447   GACAGTCCACAAAAC   TGCCAACTTCCGCT TCTTGCTCTT AGCGGACATTAGCA    TAGGCTATTTACCAT  51 362
SH03_RS11810 NONE
SH03_RS11805 2388874 .. 2388887 -  -2.4   -2.9732   TGTCAACGCAAAGCA               GAAG TGTCAC CTTC                GGTGCGAAACAGAGA  42 55
SH03_RS11800 2388606 .. 2388619 -  -9.5  -5.77734   AAATAAAAACAAAAA               CCCGC CGAA GCGGG                TTAAGTGCGGGTGCG 100 96
SH03_RS11795 NONE
SH03_RS11790 NONE
SH03_RS11785 NONE
SH03_RS11780 2385927 .. 2385958 - -12.4  -3.64822   ATTGCCCCATTTAAA      GCACAAAACCCGCT CATC AGCGGGTTTTCTAC       TTTTTCTTAACGTCG 100 127
SH03_RS11770 2384612 .. 2384625 -  -9.5  -5.60689   GCAGATAATAAAAAA               CCCGC CTGA GCGGG                TTTGAGATTGTGGTG 100 310
SH03_RS11765 NONE
SH03_RS11760 NONE
SH03_RS11755 NONE
SH03_RS11750 2382369 .. 2382379 -    -4  -4.03413   ACTGCTTCAGATAAA                 TTTG TAA CAAA                 CCAGAACACCATTAA  59 247
SH03_RS11745 2381805 .. 2381818 -  -8.1  -5.31059   ACACCAAGCAAAAAA               GCTCC CGAA GGAGC                CTTCATTTTCACTTT 100 233
SH03_RS11740 2381431 .. 2381441 -  -5.4  -3.95836   ACGTGTAAAAGATAA                 GATG AAA CATC                 GCAATAATCAACATA  63 109
SH03_RS11735 2381135 .. 2381150 -  -6.8  -4.95302   TCAAATATAACAAAA              CCCCGT AAAA ACGAGG               TTTATGGATAAATTT  86 55
SH03_RS11720 NONE
SH03_RS11715 NONE
SH03_RS11710 2377791 .. 2377803 -  -3.4  -4.78477   ACATATAAAAAATAA                TCTC GGTGT GAGA                TGCTTTACGTCTTCC  68 103
SH03_RS11695 2374541 .. 2374564 -  -9.6  -5.16841   TTATATGAATAAAAA          TCCCCTCTCC GGTA AGAGAAGGGA           TTAAGGGTTTACAGA 100 34
SH03_RS11690 2372907 .. 2372917 -  -6.8  -3.73224   TGACCGCTGAGCAAA                 TCCG CCG CGGA                 AAAACCGTAGTTGTT  66 132
SH03_RS11670 2368866 .. 2368894 - -13.2  -2.83271   TTACTGCTATAACCA        GGCTGGCCTG GCGATATCT CAGGCCAGCC        ATTGGTGGTGTTTAT  91 37
SH03_RS11660 2367635 .. 2367664 -  -8.6  -2.50779   AGCATAACCCAATAC       CCTAATGGCCCA GTAGTT CAGGCCATCAGG        CTAATTTATTTTTAT  63 37
SH03_RS11655 2366396 .. 2366413 - -10.5  -5.76949   GACGGCGAAAAAAAA             CCGCCAG TAAA CCGGCGG              TGAATGCTTGCATGG 100 143
SH03_RS11640 2363537 .. 2363549 -  -7.7  -3.08522   CAGCTAGTTGAAAAC                GTGAC AAC GTCAC                TGAGGCAATCATGAA  63 285
SH03_RS11620 2361796 .. 2361809 -  -9.5   -3.6707   ACGCAATAGTTGAAA               GGCCC ATTC GGGCC                TTTTTTAATGGTACG  78 30
SH03_RS11600 NONE
SH03_RS11595 NONE
SH03_RS11590 NONE
SH03_RS11585 2354404 .. 2354420 -  -5.9  -2.52896   TCATGGTTTAATCGA              GGAAAAA CGC CTTTTCC              TGGATCATAAAGTGG  52 83
SH03_RS11580 2352765 .. 2352780 - -10.4  -4.56978   TGGTGAAATAAGAAA              CCCGGT CGAA ACCGGG               TTCAGAAGTAACGGT 100 45
SH03_RS11570 2351597 .. 2351610 -  -6.7  -3.03771   TCAGATGCTGGAAGA               GCAGT ATCC ACTGC                AAGAGAACGGACAGA  56 94
SH03_RS11530 NONE
SH03_RS11525 2342149 .. 2342182 -  -6.1  -4.72333   AACTATACTCAAAAA     CTAACAGCCACGGTCA TCA TGAT-GTGGCTGTCAA     TGAAACTATAACCCA  77 31
SH03_RS11520 NONE
SH03_RS11515 2336202 .. 2336226 - -14.3  -3.36452   AGTCGGCAATATTAA          GCCGCATGCCA TCT CGACATGCGGC          TTATACGGTTTACCA 100 35
SH03_RS11510 NONE
SH03_RS11505 2334140 .. 2334151 -  -5.8  -2.62158   TTAAATAAGTAACAG                CACC CTCT GGTG                 TTTTCGTATGCAGTG  52 299
SH03_RS11500 2333568 .. 2333597 -  -5.7  -2.71731   TTGACGGTGTAACCA       CTCATTCGACTGT AGGC ACTGTCGGATAAG        TTATAAAAACCTTGC  52 356
SH03_RS11495 NONE
SH03_RS11490 NONE
SH03_RS11485 NONE
SH03_RS11480 2330151 .. 2330166 -  -7.6   -3.6164   AACATGGATATATAA              GAGTAG GGGA CTACTC               TCTTTCTATTTTTAA  70 250
SH03_RS11475 2327734 .. 2327764 - -12.8  -3.28537   ATAGTCAATGAGGAA       TTCTTCTGCTGT GCGGATG ACAGCAGAAGAA       ATGAGAAGAGGCATT 100 39
SH03_RS11470 2327274 .. 2327290 -  -4.5  -4.08767   TTTATCTCCTTAAAA              CAATAAA GTT TTTATCG              ATACTTTTTTAACAT  63 68
SH03_RS11465 2326427 .. 2326449 -  -8.4  -2.53831   CGCCTAAAAACAACG           CGGGGCAG GGAATGG CTGCCCCA           TTTAATTCTTACGCA  63 73
SH03_RS11460 2324381 .. 2324400 -   -15  -2.76815   ATCTCGCTCAATAAG            GCGGCGGA AAAA TCCGCCGC             ATGAAGGTTTAGTTA 100 38
SH03_RS11455 2323125 .. 2323150 - -10.5  -3.80841   ATGATGATGACGAAA         CACCCGACA GGAATTTA TGTCGGGTG          CCTTGTTAAGGTCAT  86 79
SH03_RS11450 NONE
SH03_RS11445 2318781 .. 2318798 -  -6.2  -4.13945   ATCTCCATGCGAAAA             CCGGGC GAATTT ACCCGG              TTAAGTAAAATCCGA  69 45
SH03_RS11440 2315947 .. 2315971 - -13.6  -3.08201   GAATATTGCTAAAAT          CCCCGCCAAC GATGT GTTGACGGGG          CTGTTATTATTTTGG 100 32
SH03_RS11435 NONE
SH03_RS11430 2314168 .. 2314197 - -15.1  -3.57387   AACAGACTTTGGAAA       TTGTCCCGAAACG GGTT CGTTTCGGGACAC        CGTTACCGTTAAACG 100 44
SH03_RS11425 2312477 .. 2312499 - -13.5  -4.81685   AGCAAGCACGAAAAA           GGGAGCGAT GAATT ATCGCTCCC           TTGTCTTATAACCAT 100 51
SH03_RS11420 2311021 .. 2311059 - -11.8  -3.07962   TGGGATAGTTTAAGA   GGGTAACAAGCCGGTG GGTAAAG CACCGGCTTGTTACAA   AGTAAGAATGGGAGT  86 41
SH03_RS11415 2309336 .. 2309347 -  -5.8  -3.40597   TGGCGCATCTAAAGA                CTGG CTTT CCAG                 AGTTCAACACGGTTT  59 7
SH03_RS11410 2306878 .. 2306891 -  -9.5  -4.55798   CACGTTAAATGAAAA               CCCGC GAGT GCGGG                CGAGAGGAATTTGTC  95 39
SH03_RS11405 NONE
SH03_RS11400 NONE
SH03_RS11395 NONE
SH03_RS11390 NONE
SH03_RS11385 NONE
SH03_RS11380 2300592 .. 2300604 -  -3.3   -3.6682   TCTCAGGTACTGAAA                GCGGA AAT TACGC                TGGATTACCAGTTGA  51 104
SH03_RS11370 2299574 .. 2299585 -  -5.8  -3.32946   GTTTTAAGGACAACA                TCGC CGTA GCGA                 AGAAACACGTGCTAA  57 76
        rpsV 2299343 .. 2299364 - -13.1  -5.71295   AGATAAAAACAAAAA           CACCATTGC GCAG GCAATGGTG            TTTAATCGTCATTGA 100 58
SH03_RS11360 2297514 .. 2297537 - -14.6   -3.4404   AGGGAGAGGGAAATA          GCCCGGTAGC CTTC ACTACCGGGC           GCAGGCTTAGATGGA 100 32
        adhP NONE
SH03_RS11350 2295809 .. 2295860 - -10.3  -2.63257   ATTGTAGACAACGTA GGCTTTGTTCATGCCGGATGCGGCG TGAA CGCCTTATCCGGCATGA--AAACCC TTCAAATCCAATAGA  74 135
SH03_RS11325 2289832 .. 2289854 - -13.4   -3.1706   AATTTATCTGATTAA           CTACCGGGCC GTA GACCCGGCAG           TTATTTTAACCACGA 100 31
SH03_RS11320 NONE
SH03_RS11315 2287938 .. 2287959 -  -3.1  -3.54436   CAGACACTTATAGAA           TTAGTGA TGATTTAT TCACTAA            AAAGGCCATGAACTG  49 22
SH03_RS11310 2286170 .. 2286184 -  -6.4  -2.66964   TTACTCATGACATGA               CTCCTG CTC CAGGAA               TGAATTGGGATCTGA  54 85
        narZ NONE
        narH NONE
SH03_RS11295 NONE
        narI 2279434 .. 2279456 -  -6.2  -3.14132   CTGCGGTTTCATTAA           CGTTCTCCTG TGA CTGGAGAACT           ATCATAGCCTGCAAG  57 78
SH03_RS11285 2278493 .. 2278511 -  -2.3   -2.6927   ATCCGGCATACATTA             GCCCGGT TGTAG ACCTGAC             AGGCGAAGCGCATCA  40 51
SH03_RS11275 2276678 .. 2276691 -  -8.1  -5.31855   GACGAACAACAAAAA               GCAGC ACTT GCTGC                AGATATTACCGACGT 100 188
SH03_RS11235 2267829 .. 2267841 -  -4.8   -3.6682   GCCGACTCATCCAAA                CAGC CTGGC GCTG                TCTGCCGATGGCAAA  55 237
SH03_RS11225 2264506 .. 2264525 - -11.4  -4.06903   AATCGTTAAAGTAAA            TGCCCGGC AAAT ACCGGGCA             TCAAGGTAATTACTC 100 35
SH03_RS11210 NONE
SH03_RS11205 2261047 .. 2261062 -  -7.6  -3.40403   TCTTTCTCACGATAA              GAAACG CATC CGTTTC               TTAAGCGCCTTTCTG  62 417
SH03_RS11145 2252361 .. 2252400 -  -7.8  -2.79831   TGAATCTGCATGATA  TTGCCTGCCGGGTAAGGCG TTA CGCCGCATCCGGCAT-CAA  ATGACTCAACGTTGT  61 31
SH03_RS11130 2248421 .. 2248438 -  -9.9  -2.94888   AACCCACCGAAATGA             TTCAGGC GACA GCCTGAA              CGTAGCAGGGATCCA  73 64
SH03_RS11120 2246749 .. 2246768 -    -7  -4.07568   CGGTGCGCCGTAAAA            CCCCATCC TTCA GGGCGGGG             ATATAAGGCGCGGTT  70 191
SH03_RS11095 2242923 .. 2242951 - -12.5  -3.28791   ATGTCGGGTGGACAA        TCCGCAAAGCAAC CAG GTCGCTTTGCGCA        ATGGTTTTATCCTTG  83 115
SH03_RS11080 2241502 .. 2241519 -  -2.6  -4.30719   GGCTGGTATAACAAA             CGCCCA AGTCTG TGGGTG              GAACCGCGTAACAAG  60 510
SH03_RS11065 2237696 .. 2237711 -    -9  -2.75229   GAAAATGTTCAAGGA              GGGATC GACA GATCCC               TTCACCTTTCAGAAC  67 34
SH03_RS11055 2235466 .. 2235488 - -14.8  -3.65199   AATCTGCTAGTCAAA           TGCGCGGGGA AAA TCCCCGCGCT           TGCCCTTACCTGGAC 100 31
SH03_RS11040 NONE
SH03_RS11035 NONE
SH03_RS11030 2233255 .. 2233276 -   -13  -3.43853   TTAATGAGTGAAAGA           GGCGGAGG TTTTTT CCTCCGCC            TGTGCGCGTCAGAGT 100 34
SH03_RS11010 2225815 .. 2225828 -  -2.3  -3.27498   TACAGTCCACATCAA               GACCG TGTC CGGTT                ATGCAGAAACAATGC  45 24
SH03_RS10965 NONE
SH03_RS10960 2211005 .. 2211019 -  -7.1  -4.58466   TTGATAAGGATAAAA               CCGCA GACAA TGCGG               CGGAATATTTCTTCG  77 499
SH03_RS10885 2195135 .. 2195156 -  -7.3  -4.90778   CTTAGTGAAATAAAA           GGGCAAC TATTCGCC GTTGCCC            TTCATTCACCGATTA  85 38
        tynA 2192615 .. 2192629 - -11.4  -5.32944   CTCATAAGTAAAAAA               CGGCAC CTG GTGCCG               TTTTTTTGTCTGAAA 100 44
SH03_RS10870 2189919 .. 2189945 - -15.3  -3.33815   ATCTGTTTTAACTAA         TTGGCGTTGCA GTACA TGCAACGCCAA         TTAGTTAGCGGAATT 100 30
SH03_RS10850 2185396 .. 2185418 - -14.9  -2.74012   GGATTATCTGAATCA           GCTCCCCTG GAATG CAGGGGAGC           GGCAAGATTAAACCA 100 33
SH03_RS10845 2184534 .. 2184549 -  -4.6  -5.27769   ATAAAAAAGTAAAAA              TGCGGG GCAA CGCGCA               GGACAGCTCTCGACG  82 369
SH03_RS10835 2180775 .. 2180794 - -11.4  -4.16226   CATATAAAAAGACAA            GCCCGAAC AGTC GTCCGGGC             TTTTTTTTTAGAATT 100 63
SH03_RS10830 2179305 .. 2179323 - -10.2  -5.03945   GAATAAGCAGAAAAA             GCCCGCCA TAA CAGCGGGC             AGGAGGATTTAGAAC 100 34
SH03_RS10825 2178730 .. 2178749 - -10.7  -4.95957   GAAATGAATCAAAAA            GCCCGCA GCAATG TGCGGGC             GTTAGTGTCAGCGCA 100 33
SH03_RS10820 2177393 .. 2177403 -  -2.6  -2.77118   GAGACCCAAAATCGA                 TTTT GTG AAAA                 ATGGCTTTAACTCGG  42 185
SH03_RS10815 2176384 .. 2176400 -  -6.5  -5.80003   GGAAGAAACAAAAAA              CAACCTG ATG CAGGTAG              CCAGTGAGCATATTG 100 281
SH03_RS10800 2172989 .. 2173001 -  -6.9  -3.48276   CGCGGTGGCACAGAA                CACGG CAG CCGCG                AAGAAGTCAGCCAGT  63 142
SH03_RS10795 2172378 .. 2172390 -  -3.3  -4.19238   TTCCCAAGGGGAAAA                CGCAC GAC GTGCT                GACCGGAAGTGATGA  60 192
SH03_RS10785 2171270 .. 2171281 -  -5.8   -2.7927   AAACACATCGAATCA                GCCT ATTT AGGC                 TATTTTTTCCACCAT  53 62
SH03_RS10720 2163303 .. 2163322 -    -2  -3.90744   GGGGGGGTTAAATAA            CGGAATCC AGGA GTTTTCCG             TCAGACCATATAAGT  51 41
SH03_RS22875 2162541 .. 2162562 -  -7.4  -3.64822   ATCGCTGTATTTAAA           GATTTCCT TAAAAC AGGAAATC            TTATTATCACTTCTC  66 192
         kil NONE
SH03_RS10705 NONE
SH03_RS10700 NONE
SH03_RS10695 NONE
        recT 2157519 .. 2157559 -  -8.3  -5.24129   TTTTCTCATAAAAAA  TATTTCAAGTTGGCGGTGC ATT ACACCGCCAGGCTGAATTA  TTCCTCTGAATTATC 100 23
         lar NONE
SH03_RS10680 NONE
SH03_RS10675 2156553 .. 2156563 -  -3.2  -4.04318   TCCAGATATCACAAA                 GCTC TCC GAAC                 GTTTTTATGACTCTC  56 272
SH03_RS10670 NONE
SH03_RS10665 2154552 .. 2154575 - -14.6  -2.80074   GCCTCCATAAGAGTA          GCCCGATACG CTTG CGCATCGGGC           GCTATCCTGGTTATT 100 36
SH03_RS10645 2150063 .. 2150073 -  -2.4  -4.21194   TCGCACTACGTAAAA                 CGGC GCA GGCG                 AAGCAAGAAAACTGG  58 88
SH03_RS10635 2149238 .. 2149266 - -12.5  -5.63504   AACTGCATAAAAAAA        TAGAGTCTGTCGA CAT CCGCCAGACTCTA        CAGTACACACAGCAG 100 53
SH03_RS10625 2146835 .. 2146847 -  -3.3  -2.94099   TTCCTGCATCAGATA                CCTCG CGT CCAGG                GAAAATTGAGCGCGG  44 6
SH03_RS10620 NONE
SH03_RS10615 NONE
SH03_RS10610 NONE
SH03_RS10605 2143229 .. 2143246 -  -8.5  -4.14739   CTATCTATTTGAAAA             CCCTTAA GTTG TTAAGGG              TAACTTTACATAAAA  79 73
SH03_RS10600 2142277 .. 2142325 -   -12  -3.23638   TGAAACAGTGATGAA CCTTCTGCCAGATCAATAAATC AGAAA AATTTAATGATATGACAGAAGG ATAGTGAGTTATGCG  86 47
SH03_RS10595 2141204 .. 2141225 - -10.1  -5.30155   GCAGTAAGTAAAAAA           TAGGCCCGA TAAC TCGGGCCTT            GTCAGTTATTGAAGA 100 45
SH03_RS10580 2138240 .. 2138262 -  -3.5  -3.63589   GAAAATACCGTTAAA          GCG-CGTAAT GCCG ATTACAACGC           GGCAGAAAAAATCCT  53 227
SH03_RS10560 NONE
SH03_RS10555 NONE
SH03_RS10550 2133112 .. 2133136 -  -4.1  -3.62597   GCGATGCTTGAACAA          CCGCTTCCTGC GCA GGACGATGCGG          CGCTGGAGAATTTTA  53 332
         tpx 2131844 .. 2131870 - -19.6  -3.06737   GAGTAAGCGCGAATA         TGCCTGATGGTG CAA CACCATCAGGCA         TATTAAATTATGCTT 100 33
SH03_RS10520 2126477 .. 2126518 -  -6.5  -3.92373   TATCCGATCTATAAA TGTAGGCCGGATAAGATGC GCTA GCATCGCATCTGGCATTCA  GGCAAGGTAGCTGGT  67 43
        pspF 2110243 .. 2110261 -  -2.3  -4.54047   CGATTGCACAGAAAA             TCCAGCA ACGCG CGCTGGC             GCAGGGGCTGCTCCT  63 272
SH03_RS10405 2103049 .. 2103060 -  -7.2   -4.0031   AGGCCGATGAAACAA                CCCC GCAA GGGG                 TATTACGCGTTTTTC  72 28
SH03_RS10400 2101325 .. 2101366 -   -16  -3.12351   TCTTTTTATAGTTAA TGGCGCGGCGCGTTACCCT CAGGC AGGATAATGCGCCGCG-CA TCCGACTATTACGTT 100 34
SH03_RS10395 2100965 .. 2100976 -  -2.2  -3.31144   GCTTTATCCGGACAA                CGAT ACTG ACCG                 ATCGTCTGCAATTAA  45 45
SH03_RS10390 2100730 .. 2100741 -  -2.2  -3.20348   CTTACTAATATTTAA                TGAC ATTT GCCA                 TTACCGTTTGTGTTC  43 10
SH03_RS10385 NONE
SH03_RS10380 NONE
SH03_RS10375 NONE
SH03_RS10370 NONE
SH03_RS10365 NONE
SH03_RS10360 2094852 .. 2094864 -  -4.8  -3.72374   CCCCAGCAACAAACA                GGCT CATAC AGCC                CCTAACCCTTTCATG  57 141
SH03_RS10355 2093785 .. 2093805 - -12.5  -3.71149   GTATAACAGAGATAA            CGGGCGGCA GAA CGCCGCCCA            TCTTTACCAACAGAA 100 44
SH03_RS10350 2092512 .. 2092545 -  -5.2  -2.78384   TTGGTGGCCATTAGA     GCGGCTGACAGTTT TACGCG AATCTGTCTGACGC      GGCAAGGTTAATATG  50 33
SH03_RS10345 2090516 .. 2090540 - -13.6  -4.42062   GAGCGGGGAAATAAA          CGGCCCATCC ATGAG GAATGGGCCG          TGAAAGGAGATTACG 100 36
SH03_RS10335 2088229 .. 2088259 -  -2.7   -4.8143   TGAATAATGCAAAAA       TTGCCGCTAAA AGAGAAGTG TTTAACAGCAA       CGGCTAATTATCATC  67 96
SH03_RS10330 2087993 .. 2088033 -  -3.2  -4.49756   CCTCAAATAGGAAAA  CCTGAAGGCACGATTG TTAAATCTC CCACGGTGCCTTCGGG  ATGTCTGGCGTAGAT  63 1
SH03_RS10325 2086993 .. 2087006 -  -3.8   -2.7263   ATTATTCCGTGAAAT               CTGC TCGCGC GCAG                GGTTATATCACGCAG  44 189
SH03_RS10320 2086566 .. 2086585 - -13.6   -5.0916   CGGTTAACATAAAAA            GCCACGGA TATA TCCGTGGC             TTTCGAATATTTTAC 100 123
        ribA 2082086 .. 2082120 - -11.6  -2.98947   TTGAAGTAACAACTA     TTTGCTTGCCGG TTATTTTGCTT CCGGCAAGCAAA     TGAATTACACAATGC  83 48
SH03_RS10280 2078928 .. 2078945 -  -3.4  -4.41087   ACAATGAAACAGAAA             CGAAAC GGGAAT GTTCCG              TCGTTATTCCAGACG  62 185
SH03_RS10250 2073963 .. 2073982 - -11.4  -4.46775   GATGTAAAAGACAAA            CGCGAGGC TAAG ACCTCGCG             TTTTGCTTTAATCAA 100 33
SH03_RS10240 NONE
SH03_RS10235 NONE
SH03_RS10230 2071309 .. 2071329 -    -9  -3.02166   CGGTTAATCAAAGTA            TGCCGGAC GTCAT ATCCGGCA            TTTTTACAGATTAAT  68 36
SH03_RS10205 NONE
SH03_RS10200 NONE
SH03_RS10195 NONE
SH03_RS10190 NONE
SH03_RS10185 2059960 .. 2059982 - -11.2  -4.45261   TAAAGAAAGTTAAAA           TGCCGCCAGC GGA ACTGGCGGCT           GTGGGATTAACTGCG 100 32
SH03_RS10180 2059364 .. 2059385 - -13.7  -2.94144   TCTCCAGTGAAATCA           CTGCGAGCC ATAC GGCCCGCAG            ATGCAATTATCTTTA 100 69
SH03_RS10175 2058804 .. 2058822 -  -2.4  -3.16914   ACGATTCATGAAAAT             GTCCTCTT TAT AAAATGAC             TAAAAGTTAAAATTC  43 46
SH03_RS10170 2058245 .. 2058267 - -14.2  -4.84017   AATTCCGCACAAAAA           CGACCCCGTA ATA TACGGGGTCA           ATAAGGACATGGTAT 100 49
SH03_RS10160 NONE
SH03_RS10155 2055838 .. 2055872 - -10.8  -4.22948   AAAACCGACTTAAAA     GGAAAATCACAGGCGC GAT GCTACTATGATTTTCC     TGAGGAGAACAGAGG  93 77
SH03_RS10150 2055389 .. 2055418 - -19.5  -4.08144   TTCAGTAAGCAGAAA       GTCAAAAGCCTCC GACC GGAGGCTTTTGAC        TATTACTCAACAGGT 100 28
SH03_RS10140 2054101 .. 2054119 -  -8.9   -4.1023   AAGGCCAAACAAGAA             CACGGTT GCAAA AACCGTG             CCCTTAAATATTGAA  83 48
SH03_RS10135 2052540 .. 2052562 -   -12  -2.67958   CAATATCTAAATGTA           CTGGGCACCA TTG CGGTGCCCAA           TAAGTTTACTCTTCC  83 52
         cls NONE
SH03_RS10120 2050345 .. 2050376 - -10.2  -4.57073   GATCCGCTTTAAAAA      CAATAAGGGCTGAC AGTT GTCAGCCCTTTTTC       ACGCTAAAAGCGATT 100 43
SH03_RS10085 2040102 .. 2040123 -  -9.4  -4.77567   AGTGGCATAAGAAAA           CGGCTCCC TGTTGT GGAAGCCG            TTATAGTGCCTCAGT 100 120
SH03_RS10080 NONE
SH03_RS10075 2039175 .. 2039191 -  -2.1  -4.45696   GGTAAACAAAAAATA              CGGCCCC AGA AGGGCAA              TGCCGTTCACTTAAG  60 32
SH03_RS10065 2037237 .. 2037253 - -13.7  -5.55769   CCGGACAATAAAAAA              TCCCGCC GCT GGCGGGA              TTTTAAGCAAGTGCA 100 53
SH03_RS10045 NONE
SH03_RS10040 2032562 .. 2032575 -  -3.9  -4.00042   CTGGCGATTAAAGAA               TAATC GTTC GATTA                CCGTAAACAAAGACG  58 4
SH03_RS10035 2032289 .. 2032302 -  -6.7  -2.55015   ATCTCACCGAAGTTA               CCACA TCGC TGTGG                TGAATTATGGTGGTG  55 33
SH03_RS10030 NONE
SH03_RS09990 NONE
SH03_RS09985 2019857 .. 2019900 -  -3.8  -3.65812   GGTGGTGGAAGATAA CCAGGGGCAGCGTG-TCTCCT CCA ATGAGATCACGCTAACGCTTG TCGAACCGTTCGATG  53 76
SH03_RS09975 2017579 .. 2017602 -    -6  -2.64144   CTTGCACTGAAAGAG          GGCGGACGC ACCACAG GCGT-CGCC          TATCGACTGCCAGAA  50 441
SH03_RS09960 2015484 .. 2015512 - -12.5  -2.67209   CAGGAATTTATATTA        TCTCCCCCGATTA CCG TCATCGGAGGAGA        TATAACTGTCAGGCA  88 34
SH03_RS09955 2014934 .. 2014961 -  -9.8  -5.24799   TGATAAAGACAAAAA        TGGCCGCAGG CTGTTACC CCTGCGGCCG         GTTTCGGGCGCATAT 100 74
SH03_RS09950 2014400 .. 2014425 - -13.3  -5.36441   GCCGGATACAAAAAA         GGCCGCAGG CTGTTACC CCTGCGGCC          GGTTTCGGGCGCATA 100 75
        lolB NONE
SH03_RS09910 2007299 .. 2007313 -   -10  -3.62522   CAACGTCTGGAACAA               GGTGAC GTT GTCACC               GAAACTCAGCTTGCC  80 45
SH03_RS09905 2006203 .. 2006216 -  -9.5  -5.76633   TTACAGACAAAAAAA               CCCGC CGCA GCGGG                TCTTTGAGCCGGGTT 100 44
SH03_RS09900 2004113 .. 2004134 -  -3.7  -3.48629   ATGAAACGCAAAAAC           GCTTCGTTAC TCG GTAACGT-GC           TCATGGGGTTGGGTC  51 322
SH03_RS09890 2003149 .. 2003172 -    -9  -2.80499   TAATATCTTAATAAT          CAACCTGTTA TTGC TAACAGATTG           CAGAAATGGAAATAA  67 89
        ychF 2001950 .. 2001967 - -11.3  -4.98531   CGGTGAAATGAAAAA             TCCACGC AATT GCGTGGA              TTTTATATACTTTTG 100 86
SH03_RS09875 1998297 .. 1998311 -  -7.2  -3.44848   GCCGGGTATGAAAGA               CAGAAA CGA TTTCTG               ATACATCAGAGTGAT  66 106
SH03_RS09865 NONE
SH03_RS09860 NONE
SH03_RS09855 1992964 .. 1992997 -  -9.7   -2.8372   TAGTGCTGAGTAAAT     TG-CCGGATGACATCA GAA CGATGCCATCCGAACA     GTGGCTTAACCCTGA  72 31
        treA 1990914 .. 1990925 -  -4.4  -5.24129   TCTGTGTAGAAAAAA                CCAT AGCT ATGG                 TGTTATCTGCCGACA  78 86
SH03_RS09835 1988622 .. 1988632 -  -4.6  -4.02253   CCAATAAGCCAGAAA                 GCCG GTG CAGC                 CTGGGGCGTCGATCC  62 493
        ldcA 1987417 .. 1987438 -  -2.2  -4.03234   TGTCTCTTATATAAA           CCCTACCA TATTAG CGGCAGAG            ACAGCGTTTTACTTA  53 60
        cvrA 1985365 .. 1985387 -  -7.8  -2.78816   CCATTGCCCATGATA           GTGTCCAT TAAAAGG ATGGACAC           TATTTCCCCGGAACC  61 280
SH03_RS09805 1980987 .. 1981002 - -10.4  -4.00532   CGTTTAAAGAGCAAA              CCCCTC AAAC GAGGGG               TTTTTTGTTGTTTTT  89 39
        nhaB 1978453 .. 1978472 - -13.6  -3.92659   GGGCGAAAAGGCAAA            CCGGGCAT TTAT ATGCCCGG             TAAGTTGTTATCAAA 100 36
SH03_RS09790 1977781 .. 1977798 - -12.7  -5.14965   AGCGGCAGGAAAAAA             GCGCTCC CGCA GGAGCGC              CGAATGGATTAGCGA 100 34
        hlyE 1974675 .. 1974715 -    -7  -3.28791   AGCGCTCTGTCATAA  TGAGAGTTACCCGATA CCTTATTAT CAACAGGTAACTCTCA  ATCTTTAAAAAACGT  61 100
SH03_RS09750 1972104 .. 1972120 -  -2.3  -4.10855   AAAAGCCGCTGAAAA              CTTACAA TCA TTACAAG              GCTACGATCCCAGCG  56 283
        minC 1970696 .. 1970716 -  -3.3  -3.29973   TTAAAAAGGGATCAA            TTTAACGGT TGA ACGGTCAAA            GCGTTTTCGACTAAC  47 1
SH03_RS09735 1969855 .. 1969871 -  -3.7  -3.37464   CGAGTAATGCCATAA              CTTATCC TCC GAACAAG              CGTTTGAGGAAGCCT  49 10
        minE 1969534 .. 1969561 -   -15  -4.76041   GAGAGGGATGAAAAA        CTCAAGGCAGAG ATAA CTCTGCCTTGAA         GATAAATGCGCTTTT 100 50
SH03_RS09720 NONE
SH03_RS09715 NONE
SH03_RS09710 1967576 .. 1967598 -   -12  -5.08824   CCGTTAGCTAAAAAA           CCGCGTCG TATTCAT CGACGCGG           TACATATGAAATATT 100 39
SH03_RS09695 1964386 .. 1964402 -  -5.1  -4.13945   ATCCTTATTGCAAAA              CCCAG TACCGGG CTGGG              AGAAGTGCTTGTGAC  65 136
SH03_RS09660 1959417 .. 1959452 -  -9.3  -3.70109   TACACGACCCAATAA    TACTTTGTACAATAT ACGCTA AAATTGTACAAAGTA     TAAATAAGATTTCAG  78 144
SH03_RS09655 1958405 .. 1958418 -  -6.7  -3.17725   TTTGAAAAACAACGA               CCTGA TCCA TCAGG                ATAATAACCTCTTGT  59 242
SH03_RS09650 NONE
SH03_RS09645 1957774 .. 1957792 - -10.2  -3.71527   CGTTAAGTATTGAAA             CGGACGTG TGG CACGGCCG             TTGTTTTTATAAATA  82 80
SH03_RS09640 1956910 .. 1956928 - -12.4  -3.81137   TGTTAAATATTGAAA             CGGGCGTA TAA CACGCCCG             TTGTTTTATTTATGT 100 84
SH03_RS09630 NONE
SH03_RS09625 1954306 .. 1954341 -    -4  -3.14647   ACTCACGACATTGAA    CTTCAAGGCGGCGT-AT TCT ATCACGCAGCCTTTTAG    ATGACACCCTTTGTA  49 22
        mnmA NONE
SH03_RS09615 NONE
SH03_RS09610 1951088 .. 1951117 - -12.9  -2.81326   GATAATCTTAATAAG       CAG-GCCGGACAGC ATC GCCATCCGGCACTG       ATACGAGGTTTATTT  91 35
SH03_RS09605 NONE
SH03_RS09600 NONE
SH03_RS09595 1947589 .. 1947615 - -15.2  -4.32201   GGAAGTAAGCGAAAA         GGGATGCGGCAT GTG ATGCCGCATCCG         GCTTAAATCCAAACT 100 40
SH03_RS09585 NONE
        potA NONE
        potB NONE
        potC NONE
        potD 1942263 .. 1942284 - -13.7  -5.26875   TTGCTAACTAAAAAA           CGGGCGGTA ATAC CACCGCCCG            CTTGCTGAATTAACG 100 35
SH03_RS09560 NONE
SH03_RS09555 1940940 .. 1940951 -  -7.2  -3.28712   TTGTGGGCCGGATAA                GGCG TTCG CGCC                 CCATCCGGAATAATA  64 64
SH03_RS09525 1934581 .. 1934598 - -12.7  -3.30701   GTTTAGCAAATTGAA             TCGCCCC GGCT GGGGCGA              TGGCTTAGCGGGAGT  95 30
SH03_RS09520 1930923 .. 1930934 -  -2.2   -4.1822   GGTTATTGTAATAAA                CAGA TAAG CCTG                 AATTATGGATGGTGA  55 120
SH03_RS09515 1929842 .. 1929861 -  -5.8  -4.11304   GTAATTTATAAATAA            GCATTAAC CCTC ATTAATGC             CTGCTACTGCTGATT  68 87
SH03_RS09505 1928255 .. 1928278 -    -3  -4.17491   AGGAAACGGTTAAAA          CACCGCGTCA GGAG TGTCGCAACG           TCACAGTGACCCATC  60 458
SH03_RS09460 1919838 .. 1919855 - -12.7  -3.25823   CGTTGGGGAGACTAA             GGCAGCC AGAT GGCTGCC              TTTTTTACAGGTGTT  95 43
SH03_RS09385 1906434 .. 1906481 - -11.8  -2.64194   TATAAACCTGATAAT GGGCGGTTGGCCTGATAAGGCG TTTA CGCCGCATCAGGCCGCCAGCAC CGATTGCCGGATGCG  83 66
         rne 1901652 .. 1901671 - -11.4  -5.69793   AGATGAAATAAAAAA            GCCCTGGC AGTT ACCAGGGC             TTGATTACTTTGAGC 100 47
        flgA NONE
SH03_RS09305 NONE
SH03_RS09300 1889893 .. 1889917 - -15.7   -2.6563   CGGTGTAACAATGCA          TTCCGGCCTGC AGT GCAGGCCGGAG          ATAATCTTCAGATCG 100 33
SH03_RS09275 NONE
SH03_RS09270 1883876 .. 1883907 - -12.2  -4.55016   AGAAAAAACTGAAAA      CGGCGGCAACCCGC GAAT ACAGGCTGCCGCGG       CGGGTCAGGATTAAA 100 36
SH03_RS09265 1883202 .. 1883217 - -11.8  -4.91852   TGCACGAAAAATAAA              GGGCGC GAAT GCGCCC               TCGTGATTAATCAGT 100 32
SH03_RS09260 NONE
SH03_RS09255 1881719 .. 1881734 - -11.8  -5.85244   AAGTAAAATAAAAAA              GCCGGG GCGA CCCGGC               AAAAAAAATCACTGC 100 44
        bssS 1881171 .. 1881187 -  -9.4  -3.74347   CCCAGAAATGGTAAA              GGCACC GGTGA GGTGCC              TTTTGGGTGGATGGT  81 50
        solA 1879950 .. 1879969 - -10.7  -4.57837   ATACTCCTGTAAAAA            CGGCCTC ATTCTG GAGGCCG             TAATGATGATTATTG 100 35
SH03_RS09240 NONE
SH03_RS09235 NONE
SH03_RS09230 1878377 .. 1878401 - -14.4   -2.9735   ACAGAATAAATATCA          TTGCCGGATG CGTGC CATCCGGCAA          CATTTCACGCTTACT 100 36
SH03_RS09220 1876066 .. 1876089 -  -7.4  -2.83233   TAAGCACACTAATTA          TGCGCCCGACT TCC AGG-GGGCGCA          ATCCAGAGAGCTTTT  59 109
SH03_RS09215 NONE
SH03_RS09210 NONE
SH03_RS09205 1874048 .. 1874066 - -10.3  -5.11063   ACGAGCCAATAAAAA             TACCGGC GTTAT GCCGGTA             TTTTTTTACGAAAGA 100 277
SH03_RS09185 1869630 .. 1869641 -    -3  -4.55295   CGGTTGATAAATAAA                TTTG CTGG CAAA                 CCCTACACGAAGTCG  63 28
SH03_RS09180 NONE
        opgC 1868213 .. 1868243 - -11.8  -5.03715   ATTATTCTCAAAAAA       GAACCCGCCACCAG TTT CTGGAAGCGGGTTA       TGGTCAGACTGGCGT 100 77
SH03_RS09140 1864165 .. 1864180 -  -4.6  -3.09273   TGTGCGCAAGACATA              TCGCAG CAAT CAGCGA               CGGGCAAGAAGAATG  51 19
SH03_RS09135 NONE
SH03_RS09130 NONE
SH03_RS09125 NONE
SH03_RS09120 1861289 .. 1861315 -  -9.5  -5.01811   GCAGGAAATCAAAAA         TAAAGCGTGAG GGGCA CTCACGCTTTC         GCTTAAACAGTAAAA 100 72
SH03_RS09095 1858043 .. 1858062 -   -10  -5.92337   ATATACGAAAAAAAA            GCCCGTAC TTTC GTACGAGC             TCTTCTTTAAATATG 100 39
SH03_RS09075 NONE
SH03_RS09070 1854486 .. 1854496 -  -3.2  -3.29511   TCGACTGGCTGATAA                 CGCA CTT TACG                 AGGCGAAAGAGACCG  47 134
        pgaA NONE
        pgaB 1848111 .. 1848136 -  -5.5   -2.9621   ACCAGAGTGAAAGTA         CGCTACGCATA GGGG TATGCATAACA          CCAGACATAATATAA  52 58
SH03_RS09050 NONE
        pgaD 1846338 .. 1846371 - -14.7  -2.84325   GTTCGGTAAAGAGGA     CTGCGTACGTTCGGCA CTT TGCC-AACGTACGCTG     CATGCCTACAGTTAA 100 90
SH03_RS09035 1844410 .. 1844420 -  -4.6  -3.34398   GCTGGGTTTCAAAGA                 CGGC ACT GCCA                 ATCCCGATAGCCAGA  53 500
SH03_RS09015 1841139 .. 1841153 -  -8.6  -3.72893   CACGGTTGCAGGAAA               GCTAAG GGA CTTAGC               CTGCGGCGGTTTTGT  73 201
        putA 1835215 .. 1835242 - -15.6  -2.63089   GACCACGTTAAAGAT        GCCGGAGGAGGT TGTA ACATCCTCCGGC         TACCTGTTTAACCTA 100 33
SH03_RS08990 NONE
SH03_RS08985 NONE
SH03_RS08980 NONE
SH03_RS08975 NONE
SH03_RS08970 1830701 .. 1830714 -  -2.3  -3.28712   GTTTGCTCCTTACAA               CAGCC CGCA GGCTT                CTTCAAAGGACAGAC  45 6
SH03_RS08965 NONE
SH03_RS08960 1828343 .. 1828358 -  -7.6  -4.19817   CCCACGTAGCGAAAA              TATGGC AGCC GCCATA               CGCCGCGTTAATTCT  76 508
SH03_RS08945 1827445 .. 1827462 -  -4.1  -2.73875   TCCTGTTGAAGATTA             GCCGTTA AGTT TAACTGC              CAGACCTGCGACATA  46 5
SH03_RS08940 1827164 .. 1827186 - -16.3  -4.84673   TGAAATAACAGAAAA           CTCCCCCGC GAGAA GCGGGGGAG           TCGCTGGTTAAACGT 100 33
SH03_RS08925 NONE
SH03_RS08920 1822750 .. 1822764 -  -7.1  -4.07568   TTGTGCGCCTGAAAA               GACGC GTTTA GCGTC               GCATCAGGCATTATG  72 141
SH03_RS08900 1817222 .. 1817252 -  -8.2   -3.7456   ATAACGATATTGAAA       TCCAGCGTAACCTG TTG CAGGAGATGCTGGA       ACGCCATCCAGAAAT  72 365
SH03_RS08890 NONE
SH03_RS08885 1812424 .. 1812434 -  -2.4   -4.8236   GAGTTAAAAAAACAA                 GCCG AAA CGGA                 AATCGCCGACTTTAT  68 210
SH03_RS08865 1811214 .. 1811225 -    -3  -3.04398   TTCTTTGTGGAAAAG                TAAC TGAT GTTA                 TAATGTATGATGTTG  44 93
SH03_RS08855 NONE
SH03_RS08850 1809708 .. 1809731 -  -9.6   -2.7806   TGCAAATCTCTAAAG          CCCGGT-ACGA ATA TCGCAACCGGG          TATCATTTAACTTTA  70 63
SH03_RS08845 NONE
SH03_RS08840 1808257 .. 1808276 -    -3  -4.14739   CCAGGCAGCTTAAAA            GAT-AAGAA TTC TTCTTCATC            AGTCAGGAACACGTT  58 24
SH03_RS08835 NONE
SH03_RS08830 NONE
SH03_RS08825 NONE
SH03_RS08820 1802257 .. 1802280 -   -14  -5.31456   GTAATGCATAAAAAA          GAGCATTCAG TTAC CTGAATGCTC           TGAGGCTGATGACAA 100 105
SH03_RS08765 1791922 .. 1791944 - -13.5  -5.48213   CAGGCAAAAGAAAAA           GGGGTTAGC ATTTA GCTAACCCC           TTATCTTATTTGGCG 100 36
SH03_RS08760 1791043 .. 1791069 - -10.1  -5.46657   CAGTGTAACAAAAAA         CAAAGCCCCGC ATAAA GCGAGGCTATG         AAAGTGTTAGCGGGT 100 45
SH03_RS08755 NONE
SH03_RS08745 1789070 .. 1789094 -  -2.2  -2.71924   CACCTCCCGGGAAAT          CTTTACCTTT GATAT AAGGGTAAAA          TTCCACATTTCAAGT  40 40
SH03_RS08740 1788694 .. 1788721 - -17.8  -5.63517   TGGCCAAATAAAAAA        TCCCCGGAAGGC AAAA ACCTTCCGGGGA         TTTGTTCAGGGATTA 100 38
SH03_RS08730 NONE
SH03_RS08725 1787418 .. 1787431 -  -8.1   -4.7889   ATAAAGACCGAAAAA               GCCTG CGCA CAGGC                ACAAAAATCTCAGGA  91 35
        mgsA 1786860 .. 1786879 - -13.6  -4.24711   GAAAACCGTAAGAAA            CAGGTGGC GTTT GCCACCTG             TGCAATATTACTTCA 100 33
SH03_RS08710 NONE
SH03_RS08705 1782071 .. 1782083 -  -7.7  -3.57144   TCTCTTACGCCGAAA                CAGGA GTT TCCTG                CGGAACTTGAGTAAT  68 2
SH03_RS08695 1780525 .. 1780545 -  -4.7  -3.64703   CCCTGGCGATGTAAA            GTCTACAAC GTA GTTGAAAAC            TTACAAGTGTGAACT  57 220
SH03_RS08685 1779296 .. 1779332 - -13.2    -3.794   GTTCAATTTACTAAA   GGCAAAAAAAACCCCGC AGCA GCGGGGTTTTTCT-ACC    AGACGAGAACTTAAG 100 36
SH03_RS08675 1776864 .. 1776878 -  -5.7  -2.77895   TGTACGCTGAACAAG               TCCGA TCAGT TCGGA               ATAAACCAGTTCAGC  53 16
SH03_RS08670 1776230 .. 1776254 - -18.7  -4.56597   CTGTCTCTTTAAAAA          GAAACCTCCGC ATT GCGGAGGTTTC          GCCTTTTGATACTCT 100 53
SH03_RS08635 1766683 .. 1766704 -  -2.3  -4.09739   TGAATCTGGCGAAAA           TGCC-GCA CTATGCC TGCTGGCA           CAACCCTGCGTTGTT  56 142
SH03_RS08585 NONE
SH03_RS08580 NONE
SH03_RS08575 NONE
        ssuC NONE
        ssuB 1753572 .. 1753601 - -20.1  -4.06419   TGGCTTGATAAATAA       CCGAATGGCGGCA ATAG CGCCGCCATTCGG        GGAATTTACCCCTGT 100 31
SH03_RS08555 1749458 .. 1749475 -  -9.1  -5.58209   TTAAAGGTAAAAAAA             GGGAGCC GATT AGCTCCC              TGATGATATTAACTG 100 34
SH03_RS08550 1747881 .. 1747900 - -13.6   -5.9362   GAAAAGATAAAAAAA            GAGCCAGC GGGC GCTGGCTC             TTGAAGACGCTAAAT 100 40
SH03_RS08545 1746177 .. 1746192 -    -9  -5.97575   AAGGTATAAAAAAAA              CAGGAC CAAA GTCCTG               TTTTTTCGGCATTTA 100 57
SH03_RS08535 1744641 .. 1744659 -  -4.4  -5.38951   AAGGCACATAAAAAA             GCCCGCTT TTA ATGCTGGC             CTGGATTTCTGGCAA  81 215
SH03_RS08495 1732703 .. 1732718 -    -4  -3.58343   CGCAGCATGTTGAAA              GATTCGC GCA GCGA-TC              AGTTACTGGCGATGG  53 259
SH03_RS08420 1715128 .. 1715150 - -11.3  -2.86654   CAAATATATGTAAAG           CGGGGCATT AAAAA AACGCCCCG           TAATATAACTCAGAC  81 77
SH03_RS08415 1713889 .. 1713906 -    -2   -3.1247   AGCTCGGACATGTAA             CACCTA CCTTCT TAAGTG              GATTTTTTATTTACT  43 58
SH03_RS08410 1711540 .. 1711559 - -11.4  -5.00616   TCTCGCGCTAAAAAA            GGCCCCAC TTTC GTGGAGCC             TTTATTGTACGCTTT 100 68
        pflA 1710634 .. 1710657 - -13.2   -5.4505   GCGCGGAATAAAAAA          GCGGCAACTC AATA AAGTTGCCGC           TTTACGGGGAAATTA 100 38
SH03_RS08395 1708673 .. 1708684 -  -2.2  -2.93715   ACAATCTCTATAAAT                GGCT GTTG AACC                 TTAATTCGGTAGTGA  41 331
SH03_RS08380 1705236 .. 1705253 -  -9.8  -3.89572   AGCTAATCATAACAA             CCGGGG TTTCGG CCCCGG              TTCTCTTTTATTTCT  84 33
SH03_RS08335 1691359 .. 1691385 -  -9.5  -5.04249   CGGGGAAAAAATAAA        GGCGAC-CCATA GTCG CATGGTGTCGCC         TTCTTTACTTTTGTT 100 55
SH03_RS08330 NONE
SH03_RS08325 NONE
         aat 1686899 .. 1686909 -  -8.2  -3.40622   TACTCCGAAAACACA                 CGGC TAA GCCG                 CACCAAAAGCGCAAC  71 174
SH03_RS08315 1686496 .. 1686512 - -10.1  -5.56263   ATCACAAAATAAAAA              GGCCGGT TAA ACCGACC              TTTTACTCGTTCTTT 100 68
SH03_RS08310 1686181 .. 1686200 -   -10  -5.82388   AAATGCGAAAAAAAA            GCTCGCAC TTTC GTACGAGC             TCTTCTTTAAATATG 100 39
SH03_RS08295 1682639 .. 1682659 - -12.6  -4.96848   TTTTTGAGATAAAAA            TGCCAGCC GATCG GGCTGGCA            TTTTGCCTTTAGGAT 100 62
SH03_RS08280 1678170 .. 1678187 -  -6.9  -3.61715   CAGCCTGTTGAATAA             CGATCGG GAAG CCGAACG              AGAACATTTAACGGC  63 296
SH03_RS08270 1676482 .. 1676496 -  -3.5  -3.81926   TATTTTAAAAACGAA               GGCGA GTCAT TCACC               AGATAAATAAATCCA  56 119
SH03_RS08265 1675650 .. 1675670 - -11.1  -5.46629   AACATCTTAAAAAAA            GGCCTGACA TTA CGCCAGGCC            TTCTGCGTTAATTAA 100 37
SH03_RS08260 NONE
SH03_RS08255 NONE
SH03_RS08250 1671477 .. 1671502 - -11.9  -3.38581   ACTAACGGTTAAATA         GCCCGATGAAA GGAA TATCATCGGGC          ATAAGGCGATTATGC  89 35
SH03_RS08245 1669624 .. 1669654 -  -2.6  -2.89569   TGCGTAAATCAATCA       TGGCATGTCC TTATTATGACG GGAAATGCCA       CCCTTTTTACCTTAG  42 32
SH03_RS08240 NONE
SH03_RS08235 1667113 .. 1667170 -    -3  -2.50387   GTTGAGAAAATAACG TGCG-CATTCTTCCGTGATTTCCCCCATG ATG CA-ATGGGAAA-CATGAAAGAATAACGCA GGTTTTGTCGATTAA  42 37
SH03_RS08230 1666027 .. 1666044 -  -3.3  -3.92641   AAGCGGATGCAGAAA             CTCAGGC GATT GCCGAAG              CATTGCTGGAGAAAT  55 51
SH03_RS08215 1664223 .. 1664251 -    -9  -3.96148   GTCGGCGAGCATAAA       TGT-CGGCATTCC TCAC GAAATGCCGGACA        ATTTACGGGGTTTAT  80 56
SH03_RS08210 NONE
SH03_RS08205 NONE
SH03_RS08200 NONE
        artM 1661027 .. 1661053 - -12.4  -5.74086   AAATGAAATAAAAAA         GACGGACAAC TTAGTGG GTTGTCCGTC         TTCATTATAAGAATT 100 168
SH03_RS08190 1659980 .. 1659993 -  -9.5   -5.5604   TGAAGCAATAAAAAA               GCCGC ATGT GCGGC                TTCAGATTGCTGACA 100 206
SH03_RS08130 1650790 .. 1650822 -  -6.9  -5.40625   ACAGCACAGAAAAAA      TCAGTAAAGCCCTCA ACG CGAGGGCTTGTCAGA      CGATCAGGCGTCCAG  89 29
SH03_RS08120 1648315 .. 1648351 -  -3.7  -5.60689   TTAGATAACAAAAAA    CCCATCAACCTTG AACCGAAATGG CGGGGTTGATGGG    CTCCACAAAATGGGG  89 138
SH03_RS08110 NONE
SH03_RS08105 1645557 .. 1645574 -  -3.5  -3.31799   GACAATTTTTCATAA             TCATTTC GCCT GAAATAA              TGCAGCGGGTTAATT  49 97
SH03_RS08100 1645241 .. 1645267 -  -8.7  -5.47399   CGAAGGGTAAAAAAA         TGCCTGACTGC TTTGT GCGATCAGGCA         TTCTCGAATTAATGG 100 34
SH03_RS08090 1643079 .. 1643103 -    -3  -3.02461   TAATCCCTCTGAATA         GTTATTGAAGCG AGC CGCT-CAATA-C         TACACTTTTTAGCAG  44 44
SH03_RS08085 1642271 .. 1642295 - -12.1  -3.30159   TTAATCTTCTGATAA          CCGGATGGCGC GAA ACGTCATCCGG          TTATACGTCATTAAT  89 36
SH03_RS08075 1639818 .. 1639833 -  -2.4  -4.92239   GCAAAAAGGCAAAAA              CTACGG CTGG CCGCTG               GCAACCTGGGGAATC  71 376
        rimO 1636997 .. 1637039 - -11.5  -2.78018   AGCTGGCAGTAATCA TTATTCGCAGGCCGGACAAA TGAT TTTGCCCGGCCTG-AATTAA TTAAACCCGGCTACC  81 26
SH03_RS08020 NONE
SH03_RS08015 1624477 .. 1624495 -  -3.7  -4.11692   CAGCGAGTTTCAAAA             CCCCGCG TCAGG CGCTGGA             CTGCTTACTGGCAGG  60 240
SH03_RS08005 NONE
SH03_RS08000 1620469 .. 1620499 -   -11  -2.74012   TGATGATGTGAATGA       TTTAGCCCGGCGAC GAC GCCGCCGGGCCGAG       GAGATTACAGCATAT  77 30
SH03_RS07995 1619516 .. 1619534 - -11.7  -4.43173   AAAAAGAAGGGAAAA             CCGGAGC GCACG GCTCCGG             TAGAGAGGTCAGCTG 100 34
SH03_RS07990 1617946 .. 1617970 -  -8.5  -3.79633   GACAAATGCAAAATA          GCCTGATGCGC TAC GCTTATCAGGC          CTACGCAGTACCTGC  75 181
SH03_RS07980 1615114 .. 1615132 -  -8.8  -5.63517   CTGGCAAATAAAAAA             GGCGGATT ATG AGTCCGCC             TTTTGCTTTAAGTTT 100 47
SH03_RS07965 1613180 .. 1613199 - -10.7  -3.12402   GAAAGCAGGAGTGAA            GCGGCGT ACCGCG ACGCCGC             TATTTATCGGAAGGT  79 25
SH03_RS07960 1611317 .. 1611334 -  -8.4  -5.36441   TGGTGATATAAAAAA             TCCGCC TCTCGG GGCGGA              TTTTTGTTTTTAAGG 100 35
SH03_RS07950 1609502 .. 1609531 - -16.7  -3.96827   AAAAGTAGCGAGAAA       TTCTGCATGGTTA TGCA TAACCATGCAGAA        ATGTAAATTTAATTA 100 34
SH03_RS07945 1608676 .. 1608696 - -13.3  -5.07652   GGCTGCAAAACAAAA            CGGCCTCCT GTC AGGAAGCCG            CTTTTATCGGGTACT 100 67
SH03_RS07940 NONE
        glnH NONE
        glnP 1606795 .. 1606806 -  -4.4  -2.95448   TTAAATTCAATCACA                GGAT TTTC ATCC                 TTCTTTCCAGACGAC  47 9
        glnQ 1605931 .. 1605950 -  -6.4  -3.30006   AGGAAGGGATATTAA            GCAGGTTG CTGA CAACGTGC             GGGCTTTTTTGCCGG  59 146
SH03_RS07920 1603549 .. 1603566 -  -5.5  -3.15544   CTGGACCTTTATGAA             CGACGAGC AGC GC-CGCCG             TTTTGTCAATCGCCA  53 44
SH03_RS07910 1602090 .. 1602111 -  -7.3  -4.48903   CAAAACAGACGAAAA           CTGCATCCA GAGG CGAATGCAG            TTACGTTGGTGGGGT  78 40
SH03_RS07905 1599554 .. 1599571 - -12.7  -4.58283   CAATTTCTCCAAAAA             GTGGGGC CTGC GCCCCAC              ATCTGAATCAGAAAT 100 33
SH03_RS07900 1598860 .. 1598871 -  -2.2  -2.73364   CGGGCAGTTCAAGCA                TCAG ATCT CCGA                 CCATTCCCGCAGCAG  40 14
SH03_RS07895 NONE
SH03_RS07890 1597773 .. 1597794 - -13.7  -5.81412   GCCAGCTAAAAAAAA           GCCCGTCCA GTGG CGGACGGGC            AAACAAGGGTAACAT 100 226
SH03_RS07870 1592483 .. 1592520 -  -6.9  -4.86033   AAACCTGCAGAAAAA   CCGTCTCGCCGCCTCGGC GAT GCCAAACCGGC-AGGCGA   ACAACAACGTCGCCG  85 303
SH03_RS07860 NONE
SH03_RS07855 NONE
SH03_RS07850 NONE
SH03_RS07845 NONE
SH03_RS07840 1584957 .. 1584969 -  -4.8  -3.54475   TTCTTCAGGAGAGAA                GCCA TGAAG TGGC                AACAACGTGTTCGTG  53 388
SH03_RS07830 NONE
SH03_RS07825 NONE
SH03_RS07820 1581613 .. 1581623 -    -4  -3.31144   GGCCCATTTGGATAA                 TAAG TTG CTTA                 ATGATTGTGTTATGG  49 274
SH03_RS07780 1577000 .. 1577020 -  -8.3  -2.64616   CCTGGAGTCAGATTA            TCCGCGCTA CAG TAGCGCAAA            TTGCGGGGAAACAGC  63 225
SH03_RS07775 1575915 .. 1575939 -  -8.5  -3.79633   GACAAACGGAAAACA          GCCTGATGCGC TAC GCTTATCAGGC          CTACATTTTCTCCGC  75 155
SH03_RS07745 NONE
SH03_RS07740 1567730 .. 1567756 - -13.8  -2.53759   AATACCTTTAAGTGA         TACCAGATGGCA TTG CGCCATCTGGCA         GAGTGATTAACTAAA  93 32
SH03_RS07735 1566291 .. 1566302 -  -7.2  -3.30124   CCGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCAAATAG  64 51
SH03_RS07715 1559858 .. 1559872 -    -7   -4.7373   CTACTGCATGAAAAA               GGCCGC TAT GCGGTC               GGGCAGGGACCAATG  85 105
SH03_RS07705 1557935 .. 1557955 -  -9.7   -3.2964   AAAGTGTGTCGATAA            CCGCCTGAT TAA ATCAGGTGG            CTATAAATGAACTGG  76 13
SH03_RS07680 1554174 .. 1554205 -  -3.7  -4.30719   GTGTTTCATAACAAA      TTGTCAACACGCT TAGCAC AGCGTGGCGATAA       TCACGCTGTCGGCAT  63 6
SH03_RS07675 NONE
SH03_RS07670 NONE
SH03_RS07665 NONE
SH03_RS07660 NONE
        galM 1548104 .. 1548120 - -10.1  -4.14193   ACAATATGAGATAAA              GCCCTCA TGA CGAGGGC              GTAACATTACTCAGC  88 32
        gpmA 1547128 .. 1547148 -  -8.3   -5.5112   GTTAGCAACAAAAAA            GCCGACT CACTTGC AGTCGGC            TTTCTCATTTTAAAC 100 50
SH03_RS07640 NONE
SH03_RS07635 1545226 .. 1545245 -  -9.3  -4.78661   AGTGAAAAATTAAAA            GGGAGAG ACTCCG CTCTCCC             ATTATTGGCTATTTT 100 47
SH03_RS07630 1544176 .. 1544206 - -15.5  -3.15544   CCGGATGTGGATCAA       CAGCGCACGTGAA AGAGG CTCACGCGCGCTG       TCCCATTAATGGTGA 100 31
SH03_RS07510 1525101 .. 1525112 -  -2.2  -4.60924   GAAATGTTCGAAAAA                GATC CGCA GACC                 GAAGCGATCGTGATG  66 396
        gltA 1513461 .. 1513488 - -12.8  -4.99035   TTAGGCATATAAAAA        TCAACCCGCCAT ATGA ACGGCGGGTTAA         AATATTTACAACTTA 100 52
SH03_RS07450 1512531 .. 1512548 -  -9.8  -3.76781   AAATATTTTATGAAA             GGCGGC GATGAT GCCGCC              AAAATAATACTTATT  84 36
SH03_RS07445 NONE
SH03_RS07440 NONE
SH03_RS07435 1508215 .. 1508242 - -13.6  -3.35522   CAATTTTCTGAAAGA        GATGCCCTTT-CC GGC GGCAAAGGGCATC        ATGGTAAATCAGTTA 100 34
SH03_RS07430 NONE
SH03_RS07400 1501352 .. 1501393 - -10.2  -3.46936   AAATTGCAGGAAATA CGTAGGCCTGATAAGACGC GTCAA GCGTCGCATCAGGCAT-CG GTGCTGGCCTATTAA  80 37
        kdpF NONE
SH03_RS07340 NONE
SH03_RS07335 1485326 .. 1485339 -  -8.1  -2.65766   GTAAACCTCACACCA               GACCG CAAA CGGTC                AGCAGTAAATCAATG  60 4
SH03_RS07330 NONE
SH03_RS07325 NONE
SH03_RS07320 1481328 .. 1481347 -  -6.4   -5.0916   TGTTTAAGATAAAAA            GCCGTATT TATT ATTACGGC             TTTAATTAATAAAAG  87 64
SH03_RS07310 NONE
        potE 1477239 .. 1477258 -   -10  -4.46072   GCCAACAAACAGAAA            GGGCGATC ATTC AATCGCCC             TTTTTTACTTTGTTT 100 43
SH03_RS07300 1476997 .. 1477007 -    -4  -2.61322   ACATTTTTTAAATAT                 TAAG TTC CTTA                 TATTTGAATAAAAAA  45 69
SH03_RS07295 1475957 .. 1475969 -  -6.9  -2.53822   CTTACCTGATAATAC                CCGCC GCT GGCAG                TTGTCAGGCGGGAAC  52 333
SH03_RS07275 1472256 .. 1472277 -  -7.9  -2.94232   TTCGGGGGAAACAAT           CAGCCAGGC CTCT GCCCGGATG            GATAGCGCGCCATAA  62 116
SH03_RS07270 1471897 .. 1471910 -  -2.3  -2.90227   GCGGAATCAGCAAAC               GAGCA GGAC TGCAC                ACTGTGCTACATGAA  41 50
SH03_RS07265 1471232 .. 1471259 - -16.4  -3.19463   GGCATTATCTATTAA        TACGGCGTAGAC ATGA GTCTACGCCGCA         TCACATCAGGCATTG 100 31
SH03_RS07255 NONE
         fur 1470493 .. 1470510 - -11.3  -5.24129   CCCTTGCATAAAAAA             GCCAACC CGCA GGTTGGC              TTTTCTCGTTCAGGC 100 45
        nagB 1463107 .. 1463130 -  -8.9  -3.08726   GATTTTAAAAAATAT          TGCCCTGAGC AAGGA GC-CAGGGCA          GGGATAACAATTACA  69 36
        nagA NONE
SH03_RS07215 1460670 .. 1460683 -  -3.9  -3.37975   ATGGACTACCCAGAA               TATTG ACAA CAATA                AGCGCCACTATAAAA  49 46
SH03_RS07210 1459564 .. 1459578 -  -7.8  -5.40072   GCTTGTTTAAAAAAA               TGCCGC AAA GCAGCA               CTGTGCGCAAGCGAT 100 351
        asnB 1457802 .. 1457836 - -16.6  -3.66732   CAAGCACCTCAATAA    CTGAAACAGCCCCGG ATTTCA CCGGGGCTGTTTC-G     CATTTCTTACTTATA 100 32
SH03_RS07200 NONE
SH03_RS07195 NONE
SH03_RS07190 NONE
SH03_RS07185 1457056 .. 1457072 -    -3  -3.33815   ATGTGCTCTAACCAA             CTGAGCT ACGT AGC-CAG              ATTGTTTCTTCGATG  47 39
SH03_RS07180 NONE
SH03_RS07175 NONE
SH03_RS07170 1456734 .. 1456749 - -10.4   -5.1417   GCAGAAAAGCAAAAA              GCTCGC CGAA GCGAGC               TTTTTTAATGTGGCT 100 36
SH03_RS07160 1453831 .. 1453856 -  -9.7  -5.51046   TAAAGAGAGAAAAAA         CAAGGCCCACCG GAA CGGCAGGCC-TG         AGAATTACGGCTGAT 100 30
SH03_RS07155 NONE
SH03_RS07150 1452150 .. 1452173 -  -8.8  -4.43477   GTTAGTTAATCAAAA          CGCCGTCGTT AATC ACCAACGGCG           GGGACGTCTGCCAGT  93 56
SH03_RS07145 NONE
         lnt 1449384 .. 1449402 -  -6.1  -3.05463   ACCTTCCTTAGGTAA             CATTTAG TTTGG CTAAATG             TAAAGATATTGCTGT  56 296
SH03_RS07135 1448280 .. 1448291 -  -2.2   -2.7186   AAATGCCTTGAATCA                GCCT ATTT AGAC                 CGTTTCTTCGCCATT  40 61
SH03_RS07130 1447019 .. 1447046 - -16.4  -5.26316   CTACTCCAGAAAAAA        GAGGGTAGCAGC GTTA ACTGCTACCCTC         GAAGATTGTTACCCA 100 148
SH03_RS07125 NONE
SH03_RS07120 NONE
        artP 1444730 .. 1444742 -  -3.3  -3.71686   CGCAATCTAACAGAA                TTGGC AGT GCCAT                TGTTGCTCCTTGTTG  51 143
        rihA 1443758 .. 1443795 -  -9.3  -3.77089   AAAAAGAGATAAACA   GATTAAGACCACC-CAGG TAA CGCGTGGTGATCTTAATC   AATGACGTGTGTTAA  81 37
SH03_RS07105 1441847 .. 1441866 -  -2.8  -3.21416   GAGCCGGAGGATGAA            GATGTCGA TGAG CCAACACC             TGAAAATCATGAAGA  45 212
SH03_RS07090 1438861 .. 1438871 -    -4  -3.58905   ACGCGTGATACAGAA                 CATA CCT TATG                 GCCATTATATCTAGT  53 336
SH03_RS07075 1435864 .. 1435887 -  -7.4  -2.72851   CAATAAAGAGAATAT          GGGCCGAATGA AAT TC-CCCGGCCC          TTGTTTTTATCTCTA  58 38
        leuS NONE
SH03_RS07060 1431927 .. 1431938 -  -2.2  -3.28712   TTGTTCCGGGTACAA                CCGA ATCA TCAG                 TTACCCAGCGTGGTG  45 22
        holA NONE
SH03_RS07050 1430257 .. 1430271 -  -2.8  -2.90075   CCCTCCGTAACGACA               GGTATC AGC GATACA               AGCCTTGTTGGTTAA  42 15
SH03_RS07045 1429466 .. 1429482 -  -6.5  -3.53343   AATCGGCTTTCGAAA              GTGGGCT ATC ATCCCAC              CCCGCGCCGCAGATT  61 169
SH03_RS07040 NONE
SH03_RS07035 1428570 .. 1428598 -  -8.2  -2.78679   GTTTTCTACTCAAAG        CTCCCTTATCAC TCACG GTGATAAGGATG        GTTGGTGGTGATGCT  64 5
SH03_RS07030 NONE
SH03_RS07025 NONE
SH03_RS07020 NONE
SH03_RS07015 1423005 .. 1423024 -   -15  -3.50456   GTAATTAAATAGCAA            CTCCCGCC AGAA GGCGGGAG             TTTTTTACTGATGCT 100 83
SH03_RS07010 NONE
SH03_RS07005 1421932 .. 1421953 -  -5.1  -3.24456   AGATATTATGAGTAA           TGACCCAGT GTAA ATTGGGCCA            TTGATGTATGGAATT  55 39
SH03_RS06995 1420665 .. 1420681 -  -2.1  -3.62864   GAAACGGACCTGAAA              GCAGCCA AAG CGGTCGC              GAAAATGTAAAATTG  49 99
SH03_RS06990 1419527 .. 1419544 - -11.3  -5.36441   GTTCGATACAAAAAA             CCCGCTT CAAA AAGCGGG              TTTTTTATCAGACAG 100 62
SH03_RS06975 1417855 .. 1417871 -  -9.4  -4.36729   AGCAAGAATTCAAAA              CCCGCT TAATC AGCGGG              TTTTTTTTGGTCTTT  88 39
        dcuC 1414882 .. 1414904 - -13.4   -4.0162   GGGTGACATGATAAA           GCCGGAGGAA ACT TGCCTCCGGC           ATTACTATTTACTTG 100 34
SH03_RS06945 NONE
SH03_RS06940 NONE
SH03_RS06935 NONE
SH03_RS06930 NONE
        citX NONE
        citG NONE
SH03_RS06915 1405388 .. 1405415 - -18.5  -5.42265   TTAAATCATAAAAAA        GCCCGCCAGGT GGGCTT ACCTGGCGGGC         GTGATGATTTATTCA 100 57
SH03_RS06910 1404355 .. 1404377 - -12.7  -5.11836   ATACCCAAAAGAAAA           CCCTCACCG TCAGG CGGCGAGGG           TTTAACTCACATGAT 100 175
SH03_RS06905 1403833 .. 1403852 - -12.2  -3.53811   CTGATTTTGCGTAAA            GAGGATGC GAGT GCATCCTC             TGGGCAAAGCGAGTT  91 60
SH03_RS06900 1403228 .. 1403253 -  -7.5  -3.75153   GGTTTTGAAGCGAAA         GGCAGCACCAC GGAA ACGGTGCTGAC          TAACCTGAAACTGGA  69 432
SH03_RS06890 1401722 .. 1401749 - -14.8   -4.7373   TTATGGCATTAAAAA        GCCCCGCCGGGA TGGC TCCGGGCAGGGC         GGGATACTTATTCTG 100 45
        dsbG 1398065 .. 1398075 -  -3.2  -4.08692   TAAGTTTTTCTAAAA                 TAGC ACA GCCA                 CTTAGGGCAGAGCGA  58 107
SH03_RS06870 1396907 .. 1396919 -  -5.5  -3.09202   ATAGACATCTGAAGA                CGCTC TCT GAACG                TTACAGGGTGATCAG  53 152
SH03_RS06865 NONE
SH03_RS06860 1394727 .. 1394743 -  -3.5  -3.01712   CCTTTTCGGTGAATA              CCCCGGC ACA GCTGGCG              CTTGCTGATATGCTA  46 359
SH03_RS06850 1392458 .. 1392469 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG TTCA CGCC                 GCATCCGGCACTCTT  64 275
SH03_RS06810 1383881 .. 1383903 -  -3.4  -3.12351   GCGTCCGACAGTTAA           TGCTTAAAAC AGC GCCTTAAGCC           TATCCAGCACTTGCA  46 6
SH03_RS06800 NONE
SH03_RS06795 NONE
SH03_RS06790 1379690 .. 1379702 -  -7.7  -2.98789   ATCCAGAAAACAGGA                TGCCA TGA TGGCA                GACCACTTAGTTTAA  62 37
SH03_RS06765 1370524 .. 1370553 - -14.3  -3.30124   TTGTAGGCCGGATAA       GGCGTTCACGCCG CATC CGGCATGAACGAC        GCGCACTTTGTCAAC 100 56
SH03_RS06760 1369531 .. 1369557 -  -3.6  -5.34365   GGAGAATAACAAAAA         TGGTCATCTGGA GCT TACAGGTGGCCA         TTCGTGGGACAGTAT  80 257
SH03_RS06740 1366532 .. 1366543 -    -3  -3.29043   AAGGGTGTTTCATAA                CATT GTTA AATG                 TAAGTTAAAACACCA  47 77
SH03_RS06735 1366265 .. 1366279 -  -5.6  -2.71364   GTATGCCGCGAAGTA               CGGCGA TAA TCGACG               TTTAATCCGCCAGCG  52 27
SH03_RS06730 NONE
SH03_RS06725 1365074 .. 1365091 - -14.1  -3.50588   ATCTGAGAGGAAATA             GCCGGGC AGAT GCCCGGC              AAGAGAGAATTACAC 100 35
SH03_RS06720 1363710 .. 1363736 - -16.7  -3.63895   GTCAACCATCCGAAA         CCGCTCTCATC CATTC GATGAGAGCGG         TTTTTTTAATTACTG 100 35
SH03_RS06690 NONE
SH03_RS06685 NONE
        nfrB NONE
SH03_RS06675 NONE
SH03_RS06670 1347384 .. 1347410 - -13.8  -3.44487   GATGAGAGCGAAAGA         GGTAAGCCAGGT CGT ACCCGACTTACC         TGGAGGAGATTTAAT 100 36
SH03_RS06665 NONE
SH03_RS06660 1346285 .. 1346306 - -10.9  -2.78465   ACTGAGACACATAAG           GCCTCGCAA TGGC TTGCAAGGC            TTTACATGTTTTGAG  77 86
SH03_RS06655 1344622 .. 1344650 -  -3.2  -3.16564   CTCTTATTCTATCAA       TGTCGTAGCC-CA GAAA TGTGGCTATAACA        GTACTTCATATTTCA  45 385
SH03_RS06640 1342244 .. 1342260 -  -2.1  -5.80003   GGAAGAAACAAAAAA              CAGCCTG ATG CAGGTAG              CCAGTGAGCATATTG 100 247
SH03_RS06620 1340268 .. 1340279 -  -4.4  -4.13561   TTCGTGTAAAAAATA                TGCT TAAT AGCA                 CCATTTCTATGAGTT  62 327
SH03_RS06610 NONE
SH03_RS06605 NONE
SH03_RS06600 1338857 .. 1338871 -  -3.5   -4.4521   ACTATGCAAAAACAA               CTGGA AGGAA CCCAG               AAGTATATTAATGAG  67 84
SH03_RS06580 NONE
SH03_RS06575 1334702 .. 1334721 -  -9.2  -4.88129   AAAAATTATTAAAAA            TGGGGCGT TGAG ACGCCCCC             AAAAATAAAGGGTAA 100 371
SH03_RS06485 1326370 .. 1326385 -  -3.2  -3.12999   GCAGCGGAGACTGAA              GCGCCGC AAT GCAG-GC              TTGCCGTGTTGTGAG  46 68
SH03_RS06480 1325025 .. 1325055 - -11.8  -2.60079   TGACCGTATAATTCA       CGCGATTACACCGC ATT GCGGTATCAACGCG       CCCTTAGCTCAGTTG  73 115
SH03_RS06470 1324172 .. 1324186 -  -4.4  -3.54743   TATGATCAATTATAA               TTAATA TTA TATTAA               TTCGTATAATTTGGC  52 17
SH03_RS06440 NONE
SH03_RS06435 1316961 .. 1316982 - -15.9  -3.95836   AGTCTGAAAAGAGAA           CCGGCCTGT TGAT ACAGGCCGG            GAAAGGGATCAGGCA 100 34
SH03_RS06430 1315864 .. 1315874 -  -6.8  -3.70446   CTACAGCGAAGAGAA                 CCTG AAG CAGG                 CGCGTGCGGCGCTGG  63 513
SH03_RS06420 NONE
SH03_RS06415 1313442 .. 1313452 -  -2.4  -4.08394   ACATGCGTCTTAAAA                 CTCC TGT GGTG                 CACAACTCTCGGCTT  55 121
        purE NONE
SH03_RS06405 1311754 .. 1311786 - -10.6  -2.57881   CAATTGGTGCACAAT      GCCTGATGCGATGC TTGAC GCATCTTATCAGGC      CTACAATGGGTACCG  74 96
SH03_RS06380 NONE
SH03_RS06375 NONE
SH03_RS06370 1303529 .. 1303548 - -13.6  -5.63504   AATGTTACAAAAAAA            GCCACGGT ATAA ACCGTGGC             AAAATCCAACATAGC 100 68
SH03_RS06320 1291580 .. 1291605 -  -4.7  -2.94412   GTGAACCTCAAATCA         GCTTGCGCGCTA TTT TA-CGCGCCAAC         GCGCAAGGAAACTTG  50 45
SH03_RS06315 1290372 .. 1290395 -  -2.4  -3.28712   TCTTGTTTTGGATAA          GGATTCGACA CTCA TATCAAAACC           GGTAACTCTCAACCT  45 92
SH03_RS06310 1289773 .. 1289788 -  -6.2  -4.67048   CTATCTGAAAATAAA              TAATCC TTCC GGATTA               AAATAAATTCTTGCC  77 212
SH03_RS06275 NONE
SH03_RS06270 NONE
SH03_RS06265 1277690 .. 1277721 - -10.9   -4.4846   CAATTGAAGAAGAAA      TGATGCGATGCCG GATGCG CAGCATCGCATCC       GGCGTTGTGGTTCAT 100 59
SH03_RS06250 NONE
SH03_RS06245 1274348 .. 1274366 -  -3.8   -4.7497   GCGATGTAGCAAAAA             TTACCGGC CTG ACCAGCAA             AGCCATTCGCTTCTA  73 390
        copA 1269027 .. 1269080 - -10.1  -2.57931   CGTAGGCCGGATAAG GCGTTTACGCCGCATCCGGCATCCG AGCA CCATTGCCTGATGCGACGCTTACGC GTCTTATCAGGCCTA  71 150
SH03_RS06215 1267454 .. 1267465 -  -7.2  -2.98014   AACGAAGCAAGCATA                CGCC TGAT GGCG                 GTCCAAAAAAAAGAG  61 176
SH03_RS06210 1266904 .. 1266927 - -16.8  -3.67976   GGCAGTAATCCGAAA          GTGCCGGATG TTTG CATCCGGCAC           AATGCTTAATCGCGG 100 31
SH03_RS06200 1263773 .. 1263799 - -15.3  -3.09831   GCGACTGTAAAACGA         TGCAGCCAAAG TTTGC CTTTGGCTGCA         ATGAAATCAGTCTTT 100 32
SH03_RS06195 1261787 .. 1261798 -  -7.2  -3.50393   TCGTAGGCCAGATAA                GGCG TTCA CGCC                 GCATCTGGCATTTGG  66 119
SH03_RS06185 1259276 .. 1259309 -  -9.7  -3.66995   GGGAAAAAATATGAA     TATATTCCGGCGC TTAATGCC ACGCCGGAACATA      TCGAAATGATGGCTA  77 60
SH03_RS06140 NONE
SH03_RS06135 NONE
SH03_RS06130 1250238 .. 1250258 - -12.6  -3.18505   GGGTAAAAACGAAAG            GGGGCAAC ATTTA GTTGCCCC            GAGATTGCTAACAAA  93 33
SH03_RS06115 NONE
SH03_RS06110 1241549 .. 1241564 - -11.8  -5.28176   GTTATGCATAAAAAA              GGCCGC TTAC GCGGCC               TTAGTGATTACACGT 100 45
SH03_RS06105 NONE
SH03_RS06100 1240272 .. 1240283 -  -2.2  -4.07568   TCCGGTTGCTGAAAA                TGCG GCAA CACA                 GTAAGACGAAAAGTC  53 162
SH03_RS06095 NONE
SH03_RS06090 NONE
SH03_RS06085 1236930 .. 1236946 -  -5.9   -3.1916   CAAAAAATCCCAACA              TGGCTAA ACT TTAACCA              CAACTGACGTCGCAA  55 476
SH03_RS06075 1236175 .. 1236199 -  -7.1  -3.83026   TGCCGGTACAGCAAA         CCGCCGTGCC GGTTCA GGC-CAGCGG          TGGCGCAACGACTAC  66 138
SH03_RS06065 1234599 .. 1234625 -  -9.5  -5.07053   AAGCACTGCAAAAAA        CAGCCGGACGGT TTTC ACC-TCCGGCTA         TTTTTTTAATTGTGA 100 31
SH03_RS06030 1225903 .. 1225917 -  -8.6  -4.89477   GCTTGAACAATAAAA               GCGTTA TGG TAACGC               CTGCGATTAACCCGG 100 50
SH03_RS06025 1224675 .. 1224697 - -10.7  -3.12351   TTTTGCCAGACTGAA           GAGGTCATA CCAGT TATGACCTC           TGTACTTATAACAAC  79 510
SH03_RS05970 NONE
        ampG 1212179 .. 1212199 -  -4.9  -4.90525   CAATGTGAAATAAAA            CAATTATTT AAC AAATAATTA            TCATTAGAGTGACAA  74 226
SH03_RS05960 NONE
SH03_RS05955 NONE
SH03_RS05950 NONE
SH03_RS05945 NONE
SH03_RS05940 1207111 .. 1207124 -  -8.1   -5.4756   AATGCTAAGAAAAAA               GGTGC CGTA GCACC                TTTTTAATAGAGAGG 100 46
SH03_RS05935 1205367 .. 1205390 -  -3.8  -3.97911   ATCAAAGACAGCAAA          CTGAAAGTGC AGGC GCAAATTCAG           GGCGATGAAATCCGC  58 267
SH03_RS05925 NONE
SH03_RS05920 1202973 .. 1202985 -  -6.3  -3.42069   TGAAGCGGAAGAAGA                GAAGT TCG ACTTC                AGCATTCTCGATAAA  58 421
SH03_RS05910 NONE
SH03_RS05905 NONE
SH03_RS05900 1198550 .. 1198560 -  -2.4  -3.08133   CACTTACTTATGTAA                 GCTC CTG GGGC                 TTCACTCGTTTGCCG  43 110
SH03_RS05895 1197016 .. 1197041 -  -8.3  -3.18681   TCGGAAGTGGATTAA         GCCCGATCGTTC CTG GGACGAT-GGGC         TCGCTGGCAGCGATT  63 475
SH03_RS05860 1192365 .. 1192376 -  -5.8  -4.08767   GCCACTGTTTGAAAA                TCCC TTGC GGGA                 GTGAAAAAGGCGCAA  68 291
SH03_RS05855 1191429 .. 1191449 - -12.6  -4.14257   GTTAACAATCAGAAA            TGCCGGGA ATAAA TCCCGGCA            TTTTCATAATCAGAA 100 35
SH03_RS05815 1184418 .. 1184444 -  -2.8  -4.63218   CGCTGCGTAAGAAAA         GTCAGGCGCTAC GTC ATGGCGGCTGTC         AGGTGCTGTATGCGG  68 248
SH03_RS05785 NONE
SH03_RS05780 1172834 .. 1172855 -  -3.7  -3.48684   TCACAACCACCAGAA           CGGCTAC CAATCACC GTAGCCA            ATAAAGTGATAGCTT  51 107
SH03_RS05775 1171387 .. 1171429 -  -5.5  -5.30189   CACAAGAGTAAAAAA CGTAGGCAATTGGCGCATCA TGCC TGATGCGACGCTTGCCG-CG TCTTATCAGGCCTAC  84 223
SH03_RS05765 1169395 .. 1169409 -  -7.1  -3.30124   TCGTACGCCGGATAA               GACGC GGCAG GCGTC               GCATCCGGCATTAAA  64 54
SH03_RS05725 1165116 .. 1165156 -  -9.9  -4.65182   TACAAAGCAAAGAAA GCCGGACGT-A-ACCG-CAC CGAA GTGGCGGCCTGACGTCCGGC GAAAGTCATCAGGAT 100 34
SH03_RS05695 1160126 .. 1160150 - -10.8  -4.42851   TGAAGAAACTGAAAA          CGCCCAATAA GAATA TTATCGGGCG          TTAAAATATTACATT 100 34
SH03_RS05685 1159358 .. 1159376 - -10.2  -2.78263   ACAATGTAAAACTTA             CTGGCGGC GAT GTCGCCAG             TGCAGCCATAGCGCC  75 4
SH03_RS05665 1155418 .. 1155446 - -10.4  -4.40298   ATCGAAATGAATAAA       GGCAAACTGGTCG CTAT CAACC-GTTTGCC        TTCAGAGTATTAATC 100 39
SH03_RS05650 NONE
SH03_RS05645 1151675 .. 1151696 -  -7.3   -3.4285   TCAGGCAATTTATAA           CGTTGCTGA AACG TCAGCAATG            TATGATGTTGCTACA  61 398
SH03_RS05635 1150097 .. 1150107 -  -6.8  -2.85668   GAGGGGCATAGTATA                 CCTG AAG CAGG                 GTAGGGATGTTTTAC  57 145
SH03_RS05630 1148982 .. 1148998 -  -6.5  -2.73875   GGCGGGGTAATACGA              GAGTGGA CGG TCCCCTC              GCCCCCTTGGGGAGA  55 110
SH03_RS05605 1144283 .. 1144293 -    -4  -3.91488   AATTTGCTCAAAGAA                 TCAT TTT ATGA                 ATTACAAAGCCTTCA  59 121
SH03_RS05600 1142807 .. 1142819 -  -4.1  -3.44051   GTTCGAGCATTATAA                CGAAT GGC ATCCG                CATAGTGCGCTGGGT  52 275
SH03_RS05585 NONE
SH03_RS05580 1140237 .. 1140287 - -16.6  -3.06302   ATCATCTGCATGCAA TATACTATAGGGGGGTATTCTAT ATGTCA AT-GCATACCCCCCTATAGTATA TAACACTGGAGAATA 100 137
SH03_RS05575 NONE
SH03_RS05570 1138756 .. 1138776 -  -7.5  -2.85407   GAGAGTATTAAGAAC            CCCCGCC TGAAGTG GACGGGG            TAAACCTGCGGGAAA  59 41
SH03_RS05565 1137831 .. 1137842 -  -7.2  -3.30124   GTGTAGGCCGGATAA                GGCG TTCA CGCC                 GCATCCGGCAGTCGT  64 48
SH03_RS05520 NONE
        lacI 1126728 .. 1126741 -  -6.7  -2.70932   TGGGGTGCCTAATGA               GTGAG CTAA CTCAC                ATTAATTGCGTTGCG  56 42
        lacZ 1123533 .. 1123553 - -14.7  -3.38046   TCCTTACGCGAAATA            CGGGCAGAC ATG GCCTGCCCG            GTTATTATTATTTTT 100 33
        lacY 1122226 .. 1122237 -  -7.2  -3.28791   ATGTTGGTCGGATAA                GGCG CTCG CGCC                 GCATCCGACATTGAT  64 44
        lacA NONE
SH03_RS05480 NONE
SH03_RS05445 1107153 .. 1107184 -  -9.4  -2.66451   ATCTATTGAAATTTA      TGCCGGATAAAGCG TTCG CGCTGCATTCGGCA       GTTCAGCTTTTCAGC  68 28
SH03_RS05435 1105848 .. 1105869 -  -7.2  -5.31059   AGACCAATGAAAAAA           GCCCACAC AGGGGA GAGTGGGC            TGAAATGGGAAGCTA  95 152
SH03_RS05380 NONE
SH03_RS05375 1093477 .. 1093490 -  -2.3  -3.78909   TAACGATAAAATCAA               GCTGG TTCT CGAGC                TAACGGAACGTAACC  51 459
SH03_RS05365 1091936 .. 1091961 -  -7.5   -4.4009   TGTTATTGCATAAAA         CCGCGCCATGT CTGC ATATGGCGCTG          TTTCTCCTACCTCTT  75 353
SH03_RS05355 NONE
SH03_RS05350 NONE
SH03_RS05345 1085808 .. 1085818 -  -5.4  -4.84914   ATCCAGAGAATAAAA                 TCTG TCG CAGA                 TAAGGTTGTATTAAT  75 207
SH03_RS05340 NONE
SH03_RS05335 NONE
SH03_RS05310 NONE
SH03_RS05305 NONE
SH03_RS05300 1077980 .. 1078003 -  -6.9  -4.56597   GTCTTGCTGTAAAAA          TACATGATT GATATT AATCATGTA           TTTTACCTAAGACGA  76 171
SH03_RS05295 1076861 .. 1076871 -  -3.2  -4.24123   GGAACAATTTGAAAA                 CAAG AAC CTCG                 CTTAGGCCTGTGTCC  58 27
SH03_RS05275 1073407 .. 1073421 -  -5.7  -3.29511   TGGATTTTTCGAGAA               TGGAG GTTAT CTCCA               CTTTACTGGCCGATA  57 168
SH03_RS05270 NONE
        rpmJ 1072713 .. 1072745 - -12.3  -4.26344   ATATCCCCAGGAAAA      TTAATGTTGGTGT TATAAAC ACACCAACATTAA      TCCGATCTGATTATT 100 77
SH03_RS05255 1071120 .. 1071132 -  -4.8  -2.53876   CCCGAGTTGAATTGA                GGAC GTGAT GTCC                CAGTGAGTCATTTTT  47 62
SH03_RS05250 1070472 .. 1070490 - -11.7  -4.24342   CCGTCCAGGAATAAA             GCAGGGG GGCTA CCCCTGC             TGGTACATCAGAGAG 100 42
SH03_RS05245 NONE
SH03_RS05240 NONE
SH03_RS05235 NONE
SH03_RS05230 1064640 .. 1064672 -  -4.8  -3.84619   AAATCGTAAAGAGAA      CAGCGGTACATCGT ATGTA AGAACGTACCGCGG      TTGGCTGGGGAACTT  59 271
SH03_RS05225 1064041 .. 1064071 - -12.8  -2.76189   TAATGCATTGAATGA       TAAAAATGGCGC AAATACA GCGCCATTTTTA       TAGGTTAAAAACATT  91 230
SH03_RS05215 NONE
SH03_RS05210 NONE
SH03_RS05205 NONE
SH03_RS05200 NONE
SH03_RS05195 1057628 .. 1057644 -  -9.5   -3.2045   AAAAATGCATTAACA              TCGCATT CGT AATGCGA              AGGTCGTAGGTTCGA  67 185
SH03_RS05185 NONE
SH03_RS05180 NONE
SH03_RS05175 1055330 .. 1055347 -  -7.1  -4.33854   ATCAATAAAATTAAA             TCTGTAA TTTA TTACAGA              CTTTCTCGTACAGAA  75 19
SH03_RS05170 NONE
SH03_RS05165 NONE
SH03_RS05160 1052712 .. 1052739 - -12.2  -4.40333   TTGAAACAATACAAA        TAA-GGCCTTCTC ACT GAGAAGGCCATTA        CCGACTTACAGTTCG 100 31
SH03_RS05150 NONE
SH03_RS05145 1049580 .. 1049592 -  -3.3  -2.83258   AACAGACTGAATAAT                CGGCA TAA TGCTG                GCATGTCCACGCTGG  43 157
SH03_RS05140 1048537 .. 1048559 -  -5.5  -3.41051   CCAGCTCGACCACAA          CGTGCCGTCG TGGC CG-CTGCACG           AGCAGCCCATTCCGG  54 293
SH03_RS05115 1041205 .. 1041221 -  -2.9  -2.59447   GGCGAATGAGAATAT              TTGCCTG CCG CCGACAA              TCAGGTGGTCGGGGA  41 56
SH03_RS05110 1040814 .. 1040827 -  -2.3  -2.76969   TAAGCCATTTTAAAT               GACTC GGAG GTGTC                TGTTAAACCCGTGGC  41 6
SH03_RS05105 NONE
SH03_RS05100 NONE
SH03_RS05095 NONE
SH03_RS05090 NONE
        fbpC 1038111 .. 1038144 -  -9.5  -3.30124   TTGTAGGCCTGATAA     GCGCAGCGCATCAGGC ATT GCCGGATG-GCGGCAC     AAGCGCCTTATCCGG  74 60
SH03_RS05070 1034023 .. 1034051 -  -3.9  -2.90462   AAAGCCAGAAAAGAT       CGGTGG-TACTG GAATAA CAGTATCCAACG        GGGCCGAAGTACGGC  46 498
SH03_RS05060 NONE
SH03_RS05055 1032312 .. 1032332 -  -4.6   -4.6856   CAAATACTGGAAAAA            CCGTCCTG AAAAG CCAGACGG            CAGACGGGCTGTATT  72 301
SH03_RS05035 1029412 .. 1029435 -  -7.4  -5.80727   AAAAATAATAAAAAA          CGGTAGAATC GTGA GATTCCGCCG           TTAATTGCGTATGTT 100 302
SH03_RS05030 1028467 .. 1028490 - -10.2  -2.91398   AACAAATAAAAGGGA          TCCCCGTCGC ATCG GCGACAGGGG           CAGGGAAGTAACAGG  76 55
SH03_RS05025 1027251 .. 1027266 -  -4.6  -4.25283   AGCCGCTCACGAAAA              TCACGC CGCA GCGTGC               GCACCGACACACCAA  66 366
SH03_RS05020 NONE
SH03_RS05015 NONE
SH03_RS05010 1025991 .. 1026016 - -12.5  -5.18371   CCTGATAAAAGAAAA         CCCCGGCAGCC TGCT AGCTGTCGGGG          TGAATTTGCTGGGGA 100 52
SH03_RS05005 1025653 .. 1025673 -  -9.7  -5.06414   CTCCGTCAATAAAAA            CGCCAGC GGCGATG GCTGGCG            TATGGGGATATAAAG 100 79
SH03_RS05000 NONE
SH03_RS04995 1024684 .. 1024699 -  -4.7   -3.6707   ATGTAATACCTCAAA              GCAGA CCGTGT TCTGC               GAACGAATAGATTTG  57 5
SH03_RS04990 NONE
SH03_RS04985 1023657 .. 1023689 - -12.1  -3.90048   TTGTCCGTAAAAAGA      TAACGCGCCTGCC GGGTAGT AGCAGGCGCATTA      CGCAATAGGTAAACA 100 87
SH03_RS04965 1019437 .. 1019461 - -10.7  -2.78679   CGGCGTGAGTGAAAT          GTGCCGGATGC ATC ACATCCGGCAA          TATTCATTAAAACTG  77 32
SH03_RS04945 1015414 .. 1015445 - -17.3  -3.86776   TAATGAAGGATGAAA      CTGCCGGAAGGCG ATTAAA CGCCATCCGGCAG       CAAATCAAATAATTA 100 38
SH03_RS04905 1009513 .. 1009524 -  -7.2  -3.37796   CGGTAGGACGGATAA                GGCG TTCA CGCC                 GCATCCGGCAGTTGT  64 58
SH03_RS04890 NONE
SH03_RS04885 1007036 .. 1007048 -  -3.3  -2.91429   TAAAACGGTTACACA                CGCCA GGA CGGCA                AAATGGATCCCAAAT  44 137
SH03_RS04880 1006232 .. 1006253 -  -8.7  -3.91084   TGACGGGCAATGAAA           CCTGGCAAA AGAT TATGCCAGG            CGAATGGCGCTTATT  74 36
        fadE 1002032 .. 1002049 - -12.7  -4.56367   TAGCGGATAAAGAAA             CGGAGCC TTTC GGCTCCG              TTATTCATTTACGCG 100 34
SH03_RS04855 1000343 .. 1000356 -  -3.8   -3.6869   CACAGCAATCCGAAA               CCAC TGGCAC GTGG                AGAATAAGCTGCACA  53 287
SH03_RS04845  999923 ..  999936 -  -2.4  -3.17194   ACTCTTTTAATTTAA               CATG TAAACG CATG                GTTAATCCTCATATC  43 34
SH03_RS04840  999327 ..  999357 - -10.6  -3.19657   ATCAATAATAAATTA      TATCTGCCGCCAG GAATTT CTGGCGGCA-ATA       ATACAAAATTCTTTG  77 124
SH03_RS04820  996689 ..  996716 -  -9.1  -2.55021   AAACAAGCCACGAAT        TCGCCAGGCGG TTGGAG CCACCCGGCAA         TGTCGTAAACCACAG  65 43
SH03_RS04810  995194 ..  995208 -  -4.2  -3.42996   GACGACCGATCATAA               CGGC GAACGGA GCCG               ATGACAAGAAAGTTT  52 43
        mltD  993757 ..  993777 -  -9.7  -5.72622   GGCATAAATAAAAAA            GGCACCG GGGGAAT CGGTGCC            TTTTTATTATCTGGT 100 44
SH03_RS04790  991101 ..  991130 -   -10  -5.47159   GCCGAAGATAAAAAA       GCGATCGCCGCA CTGGAT TGCAACGACCGC        CTGGTTAGCCCGGAA 100 61
        metN NONE
SH03_RS04740 NONE
        metQ  981254 ..  981277 - -14.6  -3.23975   AGCTTGTAAAAATGA          CAAGACGGGC AAGC GCCCGTCCTG           AATGATATTACAAAT 100 60
        rcsF NONE
SH03_RS04725  980004 ..  980022 -   -11  -3.42056   AGTTGGAAGGTAGAA             CAGGCTCA AGG CGAGCCTG             GGACAAAAAAAAGTG  83 89
SH03_RS04720  978226 ..  978246 - -13.3  -5.47821   ATCCATGTAAAAAAA            GGGCCCTGA AAT TCAGGACCC            TTTCTGGCATCAGCC 100 35
SH03_RS04715  977267 ..  977278 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCAATGGT  64 125
SH03_RS04695 NONE
SH03_RS04690  974835 ..  974867 -   -12  -3.76952   CTTAGTTAAGTGAAA      GCCGGATAAGACGC ATCAA ACGTCGCATCCGGC      GAAAGTCAATCAGGA 100 35
SH03_RS04585  949889 ..  949904 - -11.8  -5.15634   TATCGCATTAAAAAA              GCCGGC ATTC GCCGGC               TTCATCTTATTCGTC 100 32
SH03_RS04580 NONE
        dapD  946289 ..  946311 - -10.5  -5.40474   ATCCCTGCAAAAAAA           TCGGGCAGC GTCGT GCTGCCCGT           GTGCATACTTTTAGT 100 36
SH03_RS04570 NONE
SH03_RS04565  944580 ..  944603 -  -4.4  -3.35813   TGGCAGGCCAACGAA          CTGGCGCGACC GCT GG-CGCGGCTG          AAAACGATGGACAAT  51 330
SH03_RS04545 NONE
SH03_RS04540 NONE
SH03_RS04535  938001 ..  938015 -  -5.6  -4.68994   ATGACCATCGAAAAA               CAGGGC GTT GGCCTG               GTGGTTGATCCGATG  75 210
SH03_RS04520  934702 ..  934735 - -10.9  -2.60079   TTACGCGACAACGGA     TGCCCGATGCGACGC TGGC GCGTCTTATCGGGCC      TACAAACGGCCCCGA  76 91
SH03_RS04480 NONE
SH03_RS04475 NONE
        dksA  921301 ..  921319 - -11.7  -4.81306   TTGAACAAAAAATAA             GGCGGGA GCATT TCCCGCC             TGTGGTAAACGTGAT 100 54
SH03_RS04465 NONE
        pcnB NONE
SH03_RS04455  918263 ..  918287 - -10.3  -4.21141   TTTGAACAAATTAAA          TTTACTTAATT CAA AATTAAGTAAA          AATAAGTTCACAAGT  91 190
SH03_RS04450  917429 ..  917464 -  -6.4  -4.44548   TAGAGTTAATTAAAA    CAGGGAATAATA TAAAATAGAAAT TATTATTCCCTG     TATATTCATTCAATC  74 59
        ecpD NONE
SH03_RS04440 NONE
SH03_RS04435 NONE
SH03_RS04430 NONE
SH03_RS04425 NONE
SH03_RS04420  910868 ..  910917 -    -8  -2.70932   TGGTGGGGGCAATGA TTTAT-CCGTAGCAGCACTGCCA GAAGG TGACAGTGCTGCTACGTTATCAG GGATAGGTTACCTGG  60 22
        panB NONE
        panC  909108 ..  909138 -   -12  -3.51232   CGTGGGGTAAATTAA       TAACTGGCGCCA TCAGCCG TAGCGCCAGTTA       AGTATTACGCCAGCT  91 30
SH03_RS04400  907475 ..  907506 -  -5.1  -2.62263   ATTCGCTGGAGACGA      TGTC-GCGGCTGGT GAGTA ACCAGCCGCAGGGA      TAACAATCAAGCAAC  49 32
SH03_RS04375  902949 ..  902962 -  -2.4  -3.02511   TCGACTCGGGGAATA               CACT GTCGAA AGTG                CGTGAGATCTTAAGC  42 270
SH03_RS04365  899853 ..  899872 - -13.6  -3.36515   CCGTATTCGGAAATA            TGCCCGGA TCTC TCCGGGCA             TTAAACTGATGACAA 100 187
SH03_RS04355  897722 ..  897743 - -10.9  -3.17362   ACATAATAGCTAACA           TTGACCGCG GATG CACGGTCAA            TATTTCTACAAAAAG  79 51
SH03_RS04350 NONE
SH03_RS04345  895955 ..  895982 - -17.8  -4.59982   GCAGAAGTAAATAAA        TCTGGCGGAGCC TGGG AGCTCCGCCAGA         GCCGTTAAACAGCTG 100 30
SH03_RS04330  890571 ..  890587 -  -6.5  -5.26875   CCGGCAATTAAAAAA              GCGGC TAACCAC GCCGC              TTTTTTTACGTCTGC  89 44
SH03_RS04305  881341 ..  881369 - -10.2  -2.84325   TTGGTGTAAAGATTA        TTGCCCTCACCC TGTAC GGGTGAGGGCGT        AGAGAGATTAATGCG  75 33
SH03_RS04290  878916 ..  878935 -  -7.1  -2.64794   GGGAAGGGGAGATTA            TCCGCCC GCGATG GAGCGGA             TAAATCTGTCAACTA  52 41
SH03_RS04280 NONE
SH03_RS04275 NONE
SH03_RS04270  875471 ..  875483 -  -3.3  -3.72893   GAGTCTGCGATGAAA                CGTCA CGT TGGCG                GCGTTGCGGAATATC  53 263
        coaE NONE
SH03_RS04255 NONE
SH03_RS04250 NONE
SH03_RS04245  872453 ..  872470 -  -4.1  -4.62069   TCGCTATTTGAAAAA             CTGGAAT ATGA ATTCCCG              GACAGGCATATAACA  70 318
SH03_RS04120  844779 ..  844796 - -14.1  -5.60993   TCGGGCATAAAAAAA             CCCGCGC AATG GCGCGGG              TTTTTTGTTTGACTG 100 50
SH03_RS04115  843160 ..  843172 -  -3.3  -2.62515   AATTCTTCGACATCA                CACGG TTT CCTTG                TTGTTTTCGTTGTGT  42 10
SH03_RS04110 NONE
SH03_RS04105 NONE
        leuD  840020 ..  840039 -   -15  -3.64599   GGACGATAGCGGAAA            GCCCGGTC ATTT GACCGGGC             AAGGGGATTAATTCA 100 33
SH03_RS04085  836706 ..  836730 -  -7.2  -3.64192   AAAAAGAGTGGCAAA          GGACTTGAGA AGGAG CCTCAAATCC          CTTCGCCGGCGTTAT  68 138
        tbpA NONE
        thiP NONE
        thiQ  833376 ..  833402 -  -6.5   -4.3898   ATCAGGCCTACAAAA         CGCACTACCCG TAGGT CGGATAAGGCG         TTCACGCCGCATCCG  72 51
SH03_RS04055  829554 ..  829564 -  -2.4  -2.87132   TCGTGTCCTTATAGA                 GTCG CAA CGGC                 CTGGGCAGCCTGTGC  41 8
SH03_RS04050  827989 ..  828002 -  -8.1  -3.50393   GTGTAGGCCAGATAA               GACGC GTCA GCGTC                GCATCAGGCGTTACA  68 57
        araD  827000 ..  827020 -  -8.3  -5.19261   AAATCCATCAAAAAA            CCAGGCT TGAGTAT AGCCTGG            TTTCGTTTGATTGGC 100 59
SH03_RS04040  824636 ..  824652 -  -2.1  -3.63744   TTTTTGCTCAAAATA              GCCCAAG TTG CCCGGTC              ATAAGTGTAGCAAAA  49 1
SH03_RS04035 NONE
SH03_RS04030  820818 ..  820833 - -10.4  -5.72622   GGCAGAAACAAAAAA              TCCCCG GACT CGGGGA               TTTATGTACAAGAGG 100 78
SH03_RS04015  815922 ..  815932 -  -8.2  -3.35813   TTCCATTTCAATTAA                 CCGC ACT GCGG                 ATTACGTGGTAAATC  69 47
SH03_RS04010 NONE
        pdxA NONE
        ksgA NONE
        apaG NONE
        apaH  811136 ..  811149 -  -2.3   -4.4572   AACACCTTAAATAAA               CCCGT GATT ATGGG                CCGCCATACCTGGGA  63 455
SH03_RS03945 NONE
SH03_RS03940  800409 ..  800422 -  -8.1  -3.30124   CCGTAGGCCTGATAA               GACGC ATCA GCGTC                GCATCAGGCAGCGCA  66 46
SH03_RS03935 NONE
        caiC NONE
SH03_RS03925 NONE
SH03_RS03920  795759 ..  795772 -  -5.9  -2.68775   CGATGAGCAAATTTA               CGCGC GCCT GCGCA                ATAACAGTCGGGAAA  50 233
SH03_RS03910  794905 ..  794928 -  -2.4  -4.07885   GACCTGGCGGCAAAA          CTGCT-GAAAC AGG GCTTCGAGCTG          GATGCGACCCACGGC  56 382
SH03_RS03895 NONE
SH03_RS03890  790388 ..  790401 -  -3.9  -3.65224   ACTTGATCTCAATAA               TTTGT AACC ACAAA                ATATTTGTTATGGTG  53 60
        rpsT  781970 ..  781983 -  -9.5  -5.64274   GCAGGCATAAAAAAA               CCCGC TTGC GCGGG                CTTTTTCACAAAGCT 100 56
SH03_RS03840  780860 ..  780874 -  -2.8  -2.72799   GGGGGAGATAGATTA               GTTGTA CAT TACCAC               GATTTTGACTCGGCT  41 161
SH03_RS03825  777780 ..  777806 -  -3.6  -5.34365   GGAGAATAACAAAAA         TGGTCATCTGGA GCT TACAGGTGGCCA         TTCGTGGGACAGTAT  80 169
SH03_RS03805 NONE
SH03_RS03800  771710 ..  771720 -    -4  -3.23975   ATTCCTCAAAAATCA                 TCAT CGA ATGA                 ATGGTGAAATAATTT  51 147
SH03_RS03795  771098 ..  771115 - -12.7   -5.8187   TAGCGAATAAAAAAA             TCCCCCC GAGC GGGGGGA              TCTCAAAACAATTAG 100 37
SH03_RS03780 NONE
SH03_RS03775  766738 ..  766757 -  -7.8  -4.13654   CCGCTAAATGACAAA            TGCCGGGT AACA ATCCGGCA             TTCAGCGCCTGATGC  76 150
SH03_RS03730  759088 ..  759117 - -13.7  -4.64144   AATAAGGTTGAAAAA       TAAAAACGGCGCT AAAA AGCGCCGTTTTTT        TTGACGGTGGTAAAG 100 45
SH03_RS03705  753903 ..  753915 -  -4.7  -3.80573   TGGATTATCAGGAAA                GCCTG TGG CTGGC                GTCTGGCTGGGTCGT  58 98
        yjjX  752263 ..  752287 - -15.7  -2.65298   TTTAGCGAGTACAAC          CGGGGGAGGCA TTT TGCTTCCCCCG          CTAACAATGGCGACA 100 518
SH03_RS03680  748197 ..  748218 -  -2.9  -5.03145   CAAGGTTTGAAAAAA           CCTGCACGGG TGA CCCGC-CACG           AAATTGAGGATGCTA  77 209
SH03_RS03655 NONE
        lplA  742627 ..  742648 - -10.1  -4.25401   CAAATCGAAGAGAAA           GTTGCCCGC ATGG GCGGGTAAC            TACCTTACAGCCCCC  93 25
SH03_RS03615 NONE
SH03_RS03610  733818 ..  733872 - -13.8  -2.57931   CGTAGGCCGGATAAG GCGTTCA-CGCCGCATCCGGCAGTTG GCGCA CAA-TGCCTGATGCGACGCTTAACGC GTCTTATCATGCCTA  95 380
        rsmC  726176 ..  726187 -  -7.2  -3.30124   TTGTAGGTCGGATAA                GGCG TTCA CGCC                 GCATCCGACACGGTA  64 54
SH03_RS03560 NONE
SH03_RS03555 NONE
SH03_RS03550  725296 ..  725310 -  -5.8  -3.53224   TATCTGGCTTGCAAA               TGATAA AAA TTATCA               TATGATATTGGTTAT  59 341
SH03_RS03540  724155 ..  724173 -  -5.9  -3.98282   GGTACATTAACCAAA             GCCGGAC GTTAA GCCCGAC             GGAGAGAGAAATATT  66 274
SH03_RS03525 NONE
SH03_RS03520  721119 ..  721154 - -13.4  -3.26947   TAACTTTTATAGTAA    CACACGGAGGAGAG GAGGCTGT CTCTCATCCGTGTG     CTTAAGCGAGGCAAT 100 42
SH03_RS03515 NONE
SH03_RS03510  719769 ..  719781 -  -3.3  -2.78384   TTGTGTCGCAGTATA                CCGCC AGA AACGG                GGATTAATACTCTTT  43 29
SH03_RS03505  719226 ..  719239 -  -5.2  -4.28254   GGGTAACAGCTAAAA               CGCG GCGTTT CGCG                GTTCAGGAAATGAAG  68 28
SH03_RS03500  716653 ..  716687 - -15.8  -3.33261   TTGTAAGCCGTAGAA     GGCGTGTAGGTCGCAC CCT ATGCGACCTACACATC     AGTCAGGAATTACCC 100 35
SH03_RS03490  714411 ..  714425 -  -5.6  -3.14468   TGTGAGCATAGGTAA               GCGGGA ATT TCCCGG               TATTTATCTTTTGAT  55 84
SH03_RS03485  712872 ..  712899 - -12.2   -4.2679   TAATCGCCATGAAAA        TGCCCGATAAGCA AAA TG-TTATCGGGCA        TAAGGAGATTAATCT 100 34
SH03_RS03475 NONE
SH03_RS03470  708649 ..  708666 - -14.1  -4.51812   TCTGATAAGAACAAA             GCCCCGC CGAA GCGGGGC              TAAACACGGTTAGTG 100 35
SH03_RS03465 NONE
SH03_RS03460  707418 ..  707446 - -14.5  -2.86124   TTGAGTGAAATATCA        GGCCGGATGCGGC TGC GCCTTATCCGGCC        CATAACCCCTTACTT 100 35
SH03_RS03445  704761 ..  704787 -  -7.4   -5.0538   CTTTATCGTAAAAAA        TG-CCCTCTTG GGTTAT CAAGAGGGTCA         TTATATTTCGCGGAA  89 65
SH03_RS03440  700694 ..  700716 -  -9.1  -2.89569   TCCGTAAATTAAGCA           GCGGCCCAA ATTCA TCGAGCCGC           AGAAGAAGAAATTGC  67 181
SH03_RS03435 NONE
SH03_RS03430  697659 ..  697677 - -11.7  -5.38549   GTGAAATAATAAAAA             GCGCACC GGAAA GGTGCGC             CAGAAAATAATGTTC 100 39
SH03_RS03425  697022 ..  697039 -  -2.8  -3.57185   CGTACTGAAACAATA             GATTTT TACTGC AAAATC              AGACTGGTAAATATT  48 108
SH03_RS03420 NONE
SH03_RS03415  694292 ..  694305 -  -2.4  -3.07816   TGGTCAGGTATTGAA               GATC CGCTTC GATC                AGGGGATGGGCTACT  42 255
SH03_RS03395  687762 ..  687772 -  -8.2  -3.00585   CATGAGAGGAAATCA                 GGCG CTT CGCC                 GCTATTTCGAATTTA  65 38
SH03_RS03385 NONE
SH03_RS03380 NONE
SH03_RS03375 NONE
SH03_RS03370 NONE
SH03_RS03365  681247 ..  681261 -  -3.6  -3.75153   TCCCTTTAAGGCAAA               TCAATA AGA TATCGA               GAAGTATACGTAGCG  56 55
SH03_RS03360 NONE
SH03_RS03355  679114 ..  679127 -  -2.4  -3.75629   GAGTGGTAAGGGAAA               CTTC CCTCAT GAAG                TGACCACTTGTAGCT  51 18
SH03_RS03345 NONE
SH03_RS03340 NONE
SH03_RS03335  675974 ..  675993 -  -2.9  -2.57132   CGGGCGGCTGACAAC            CGTTTAA GCCGTT TCAAACG             TTCCTTTCACGCAGG  41 9
SH03_RS03330  674617 ..  674635 -  -3.8  -4.10161   CAGGAGTGCGCAAAA             TGATGCGA CAA TCACTTCA             GGCTGTTTTACCTGA  60 391
SH03_RS03310 NONE
SH03_RS03305  672986 ..  673010 -  -8.6   -3.8512   GACTTATTATAATAA          GCGCAAGG GTAAACGTT CCTTGCGC          TTTCTTAAATTAAGA  75 128
SH03_RS03295  671699 ..  671726 -  -5.4  -4.11216   TCTGCACCTGCAAAA        CGGCGGCAGCTG GCGT CACCTGGCGCTG         GGCGTGGCTGGCTGG  65 305
SH03_RS03275  667419 ..  667432 -  -8.1  -3.50393   TTGTAGGCCAGATAA               GACGC GTCA GCGTC                GCATCTGGCATAAAC  68 169
SH03_RS03235  660300 ..  660320 -  -4.7  -4.06677   AACAAATAAATACAA            GACAATTGG GGC CAAACTGTC            CATATCATAAATAAG  61 41
SH03_RS03215  656918 ..  656930 -  -2.7  -4.56597   GGTGGTCTTCAAAAA                CTAAA GAT CTTAG                TTTAACTATTTGTTT  61 243
SH03_RS03205 NONE
SH03_RS03200  654479 ..  654498 - -12.1  -2.69246   GACAAATTGATAGCA            GGGCCCC TTTACC GGGGCCC             TGAAGCGTTAGTTTT  83 33
SH03_RS03195  653250 ..  653278 -  -3.8  -4.32482   AGCCATAATCGAAAA       GGCGCGGATGTCT ATTA AGGCATCCG-GCT        AATCTGTAAGCAATA  63 208
SH03_RS03180  650896 ..  650906 -    -4  -3.89346   TCCTGACGGGATAAA                 TTCA TAC TGAA                 GAACCTATTTAATCA  57 510
SH03_RS03175 NONE
SH03_RS03170 NONE
SH03_RS03165  649270 ..  649290 -  -6.8   -3.5511   TTCCAGCCAGAAATA            CCGGGAAC CTGTT GTTACCGG            GCGATGAGTGCGAAC  63 19
SH03_RS03160 NONE
SH03_RS03155 NONE
SH03_RS03150 NONE
SH03_RS03145 NONE
SH03_RS03140 NONE
SH03_RS03135 NONE
SH03_RS03130  642707 ..  642720 -  -2.4   -3.6878   ACATAGTGGAAAATA               TGCT TTGTTC AGCA                TGCTGAACCGTAATG  49 258
SH03_RS03125 NONE
SH03_RS03120  640941 ..  640954 -  -2.4  -3.09749   TATTGCGAACAGACA               TGAG TTTCTC CTCA                GACTGGTAAAATGCC  43 23
SH03_RS03115  638885 ..  638896 -  -5.8  -3.21276   CGTCCTCTCATAACA                GGGT AGCG ACCC                 ATCATTATCCGACTG  55 103
SH03_RS03110 NONE
SH03_RS03105 NONE
SH03_RS03100  636149 ..  636172 - -13.2  -2.67129   CTAATCAATAAAATC          CTGCCCCATA TCTA CATGGGGCAG           TTGTTCATTCTTTTA  91 38
SH03_RS03085  635147 ..  635168 -  -4.5  -3.44051   TGGTTATCATTACAA           TTGGAAATA AAAT TGTTTCCAA            TAGACATTTTTAACA  55 150
SH03_RS03080  634557 ..  634569 -  -4.1   -4.1673   GAATCGGTTAACAAA                GGATT CAT AACCC                ATACTCCAGACGGAA  61 17
SH03_RS03075 NONE
SH03_RS03070  631175 ..  631190 - -11.8  -4.19258   ACATTCCAGCTAAAA              GCCCGG CAAG CCGGGC               GTTAACACATCAGAA 100 35
        fecB NONE
        fecC NONE
        fecD NONE
SH03_RS03050  627456 ..  627474 -  -7.4  -4.10657   TCAGAGTCCGGAAAA             GTTCAGCC CCA GTCTGAAC             AGGCTTGCTGGCGCC  73 88
SH03_RS03035 NONE
SH03_RS03030  624005 ..  624023 -  -8.9  -3.05844   TTGGCCACCTGAACA             GAGGTGA TATGC TCACCTC             AGAACAACACAGGTG  62 315
SH03_RS03015  623002 ..  623030 -  -3.1  -3.90586   ATATGACCTCAGAAA        TGGATGGCGCTAT AGC ATATGGTCATCCA        GGAAAAAAAACACCA  55 468
SH03_RS03000  618745 ..  618762 -  -5.5  -2.96598   CAATTAAGGGACATA             GCCAGAT ACGC AACTGGC              TGATGCAAGCAGTCT  52 213
SH03_RS22860  616411 ..  616430 -  -7.2   -3.4072   TACTTTTCAGTACAA            GC-GACTGT ATT ACAGTCTGC            CATATATGATTACCT  66 119
SH03_RS02960  614791 ..  614810 -   -15  -2.89607   TTAAAACAGTAATCA            TCCCGGGC AAAT GCCCGGGA             ATTATTCTAGGATTA 100 288
SH03_RS02945  612001 ..  612014 -  -3.8  -3.57883   AGAATATGTGCGAAA               GAGG GCAGCG CCTC                AGATCAGCGCTGCGA  53 48
SH03_RS02935 NONE
SH03_RS02930  609402 ..  609419 - -12.7   -4.3898   ATTAGTGCCAGAAAA             GCAGCGC TTTC GCGCTGC              ACGTAGGGGGGCTGT 100 40
SH03_RS02925  607990 ..  608009 -  -4.2  -2.57931   GTGATTGCGCATAAC            TTCTCCCA ACGT CGGGGGAA             TCTTCAATCTTCCCC  45 69
SH03_RS02920  606915 ..  606942 -  -4.2  -2.80816   GGTTCACTCATGAGA        TATCCTCCAG TTTCCTGC CTGGAGTATA         GGCAACGTCCGGCAA  46 71
SH03_RS02915  605261 ..  605284 -   -14  -3.46482   AACCGAATGAACGAA          TAAAGGGAGC GAAA GCTCCCTTTA           TTATTGTTAGCAAAG 100 149
SH03_RS02900  601243 ..  601254 -  -7.2  -3.30124   GTGTAGGTCGGATAA                GGCG TTCA CGCC                 GCATCCGGCAATAAC  64 58
SH03_RS02895 NONE
SH03_RS02890  597785 ..  597804 -   -15  -5.47431   GTAAGAGATAAAAAA            GGCCGGAG CATG CTCCGGCC             TTCGTTTTCATCACT 100 50
SH03_RS02880  595486 ..  595504 -  -7.4  -2.74322   TTGAAGCGTTTAAAC             TCGGTTAC GAA GTGACCGA             TCCAGAAGAGCTGGA  57 402
SH03_RS02870  594106 ..  594138 -  -6.3  -2.50387   CTGCATAAAATAATG      TGATGCCGGGA TGGTTTGTATT TCCCGGCATCT      TTATAGCGATAGCAA  53 41
SH03_RS02850  590142 ..  590167 -  -8.3  -4.93877   CGTGAGTAAACAAAA         CCCAGACATCA TGGA TAATGGCTGGG          CTTAATTGAGCGTAG 100 45
SH03_RS02845 NONE
SH03_RS02835 NONE
SH03_RS02830 NONE
SH03_RS02825  587789 ..  587814 - -10.5  -4.61231   TTACAGCGGTAAAAA         GTCTGGCTC ATTATAGG GAGCCAGAC          TTTTATTACCAACCG 100 44
SH03_RS02820  587342 ..  587361 - -10.7  -3.14468   TGTCATCAGACTTAA            TCCGGGC ATGATA GCCCGGA             TTTCCATCAAGATTA  79 38
        treR  583093 ..  583106 -  -8.1  -4.92239   GGAAAAATTTAAAAA               CGGGA ACGT TCCCG                AAACGCAGCGAAGAT  95 65
SH03_RS02805 NONE
SH03_RS02800  579863 ..  579888 -  -9.8  -4.61868   TACTGACAGACAAAA         CCCCGG-AATG ACCGG CATTACCGGGG         CTTAGGGAAGATTTA 100 38
SH03_RS02795  577315 ..  577346 - -12.2  -2.65279   CAATTGCCAAATGTA      GGCCGGATAAGGCG TTTA CGCCGCATCCGGCA       TTTGCTTAGCTCAGA  83 48
SH03_RS02790  576439 ..  576452 -  -5.2  -4.58685   AAAGTGGTCGAAAAA               GCCG ATAACG CGGC                GCAAGTCAAAGACGC  75 320
SH03_RS02775  574077 ..  574112 -  -8.3  -2.79796   CGGCATTTGAGCATA    GTGCCTGATGCGACGC TTGAT GCGTCTTATCAGGC-C    TACAGGTGCACCGTA  64 74
SH03_RS02765  571429 ..  571450 - -15.9   -5.1356   GCGCAGCAATAAAAA           CGCCTCTCC GTGT GGAGAGGCG            CAGGAGATTACGCGT 100 33
SH03_RS02740  565611 ..  565623 -  -7.7  -3.15579   GCAAGCGGCCATGAA                CAGCA AGG TGCTG                GTCGACCTGCGCTTG  61 371
SH03_RS02705  558214 ..  558227 -  -5.3  -4.13014   GCCAGAGGGTTAAAA               TTCAG ACAG CTGAA                AAATGCAAAACTGCC  65 183
SH03_RS02700  556680 ..  556704 - -14.3  -3.73647   GCTATGCAGTAATAA          GACGGCTCCTG ATT CAGGAGCCGTT          GATGTTTCTGGGGGT 100 40
SH03_RS02690  555493 ..  555523 -    -7  -3.16743   AACTCAGAGACTTAA       TTCCCCTATC CCATAGATAAC GATAGGGGAA       AATTATTTTTGCAGA  59 57
        cpdB  551397 ..  551410 -  -6.7  -3.30124   TTGTAGGGCGGATAA               GATGC GCCA GCATC                GCATCCGCCAATAAA  61 84
SH03_RS02665  549953 ..  549996 -  -2.4  -2.73334   AGGAAGCAGACATGA TTGCTCCCGGCATCCCGTC ATTATCA GAGAGGATGC-GGGAGGAT GCCACTTTAATTAAC  40 40
SH03_RS02660  548859 ..  548877 -  -4.6  -3.83318   TTCTTAATAAGATAA             GATGTATT TTA AATGCATC             TTTAAGGCAAAAGCT  59 86
SH03_RS02655  547695 ..  547705 -  -6.8  -3.14132   GGTCTGGCGCAGGAA                 GGTG TGG CACC                 GAAAGCGTTCGCTAA  57 488
SH03_RS02640  544528 ..  544541 -  -3.7  -2.71731   TGTATTCGTTAATCA               GCAGG TTAG CCAGC                CACAAAAAGCCATTG  44 410
SH03_RS02630  543430 ..  543448 -   -16  -4.72333   AACGAGACGTAAAAA             CGCCGACC ATT GGTCGGCG             TTTTGCTTTCTATTT 100 52
SH03_RS02600  541305 ..  541322 - -12.7  -5.75342   GTTTTTCAAAAAAAA             GCCCCCT GCGA AGGGGGC              AAAGCAAACTATGGC 100 66
SH03_RS02565  535358 ..  535399 - -10.9  -3.47762   AATAGCCAGGAAATA CTACGCCGGATAGCGCGAA CTTC TCCACGCTACCCGGTATAA  ACGACAGATTACAGG  83 34
SH03_RS02560  534301 ..  534333 -  -2.1  -3.45087   ATGAATTCAATAACA     TTGTCGC--GCCACT GGCAG AGTGGGAAGCGACAA     ACCACCTGGAACAAC  47 237
SH03_RS02550  533240 ..  533251 -  -2.2  -2.82327   TGTGCACAGGTAAAC                GCAT AGGG ACGC                 AAAGCAATGTAAAGC  41 62
SH03_RS02545  532818 ..  532829 -  -7.2  -3.30124   TTGTAGGCCGGACAA                GGCG CTCG CGCC                 GCATCCGGCATTGTT  64 60
SH03_RS02435  509294 ..  509307 -  -6.7  -4.28049   TCCAAAATTTGAAAA               GTGCT GCAA AGCAC                AGACCACCCAAGCGG  74 493
SH03_RS02410 NONE
         psd NONE
SH03_RS02400  502779 ..  502805 -    -3  -5.40072   TTGTGGCGAAAAAAA        CGCGGCTGG TTTATGTACG CCA-CCGCG         CTGGCTATTTTCGGC  85 114
SH03_RS02375 NONE
SH03_RS02370 NONE
SH03_RS02365 NONE
SH03_RS02360  495814 ..  495834 - -19.7  -4.52589   GGTTTCCATACAAAA            CGGCCCGCC ATA GGCGGGCCG            GATTTACATTGGCGA 100 45
SH03_RS02355  494630 ..  494647 - -11.3  -4.46581   GAAAAGCGGAGAAAA             GGTCCGA AAAT TCGGACC              CGATGGAATTTTACT 100 36
SH03_RS02350  493554 ..  493577 -   -11  -3.90559   AGCAATAAGCAATAA          CGGTACGACA GCTG TGTCGTGCCG           TTTGTTTTTTCTGCG  88 484
SH03_RS02325  491294 ..  491311 -  -5.7  -3.38314   TGCAACGGGCAAAGA             TTAAACT TCCC AGTTTAA              TGACAGGTTGCTGTA  57 190
SH03_RS02320  490106 ..  490150 -  -8.6  -3.31322   TTGAATGCTTGAGAA TTTGT-AGGCCGGATAAGGCG TTTA CGCCGCATCCGGCATGACCAA CGATCACGTTATCAG  69 87
SH03_RS02300  485672 ..  485694 -  -5.6  -3.62046   CCAGGGCTTTAAGAA           TTTCGTGCTG ATG CAGCAAAAAA           TGGCGGCGGGTGAAA  58 334
        aspA  483692 ..  483711 - -13.6  -5.55769   GCTCACAAGAAAAAA            GGCACGTC ATCT GACGTGCC             TTTTTTATTTGTACT 100 52
SH03_RS02285  482290 ..  482309 - -16.4  -4.55295   TCGGCGAGAAAGAAA            GCGGGGCG TGAA CGCCCCGC             GATTGATCATTACAG 100 35
SH03_RS02280 NONE
        dipZ NONE
SH03_RS02270  479593 ..  479604 -  -3.6  -2.53876   TGTCAGGTCAATGCA                CCAC CCTG GCGG                 CAGCGGGCGAAGCGC  44 1
SH03_RS02265  479366 ..  479385 - -13.6  -4.98531   TCCTGAAACGAAAAA            CGGACCTC CGTG GAGGTCCG             TTTATATGAATTTGG 100 38
SH03_RS02260  477146 ..  477172 -  -5.1  -5.10461   TTTATGTAATAAAAA         TTATGCGGCAA ATAAA TTGCCGCAACA         TATTATACCAACAGG  81 96
        cadB  475487 ..  475526 -  -2.7  -5.08824   TCTCCAGGTAAAAAA  GGCCCCTCCCAACACAT GGGACA AAATGAAAGGAGGAGCC   TCGGAAAATACTTTT  73 43
SH03_RS02250  473282 ..  473303 - -14.5   -5.1861   CTTATGAGCAAAAAA           GGGAAGTGG CAAG CCACTTCCC            TTGTACGAGCTAATT 100 39
SH03_RS02245  471708 ..  471719 -  -4.4  -4.25016   ATCACTAATAAATAA                CCAT CAAA ATGG                 TTTAAATGACTTATT  63 107
        lysS  470003 ..  470034 - -20.4  -2.71364   GGATTTGCGGAACGA      TGAACGAAGCAGTC GCCT GACTGCTTCGTTCA       TTAAAGTGAAATTTA 100 38
SH03_RS02210 NONE
SH03_RS02205  465950 ..  465960 -  -3.2  -3.90048   TTGTGGGTAAAAATA                 CACA TAA TGCG                 GGTGACATAATAGTT  53 227
SH03_RS02195  464212 ..  464243 -  -8.7  -4.13767   TTTGTTATTCGAAAA      TGGCGTGCCGC GTAGTCACGG GCGGCACGCAA       AGTGCATTTATAAGA  83 33
SH03_RS02190  462474 ..  462499 -  -3.9  -3.70689   TACAATCGCAAAAGA         GGTGGCCAGGGG GAT CACCTGG-CAGC         ATGCTGCCAGGCGCT  53 53
SH03_RS02185  461660 ..  461688 -  -6.1  -4.45151   AATAGCTAACGAAAA        TGGCCTGAT GCGATATGTTT ATCAGGCCA        CGTCTTAATGTAATG  74 113
SH03_RS02165  457450 ..  457461 -    -3  -4.58685   AAAGCGCGTGAAAAA                CAAA CATT TTTG                 AAATATTTAGTTTTA  65 131
SH03_RS02160  454965 ..  454983 -  -8.8  -5.85178   AACAGGCAAAAAAAA             GCGCGG GGTGGGG CCGCGC             AAAAAGTATGACATT 100 143
SH03_RS02155  453886 ..  453896 -  -3.2  -4.07968   GAAGACATAATTAAA                 CTCC TGC GAAG                 GCGAGCTTCGTGACA  58 144
SH03_RS02150  452485 ..  452518 -  -9.7  -4.54727   GCTCGCAAAGCAAAA     TTAAGCCAACCTTAA GTTC TTAAGGTTGGCTTTT      ATGTTTGCTGGATTA 100 48
SH03_RS02145  450788 ..  450799 -    -3  -2.93073   CGTCTTCAACAATCA                GAAT TTTC ATTC                 ACTCACTCTCCTGCA  44 20
SH03_RS02140 NONE
SH03_RS02135  448863 ..  448893 - -12.6  -2.66593   ATAAGCTGAAACGGA       TGGCCTGATGTGAC GCT GTCTTATCAGGCCA       ATTGAACTCTTAAGG  88 160
SH03_RS02110  443164 ..  443218 -   -14  -3.21924   GTAGGCCTGATAAGA CGCGCAAGCGTCGCATCAGGCATCTG GCA CCGTTGCCGGATGCGGCGCGAGCGCC TTATCCGGCTTACCG 100 53
SH03_RS02105  442118 ..  442141 -  -4.5  -2.80994   GGGAATTCGATGACA          GTGCGGGAGG GCGGG CCTCCCGG-C          GGGTTATTGCGTTGG  49 29
SH03_RS02100 NONE
SH03_RS02095  440106 ..  440117 -  -5.8  -3.30124   CTGTAGGCCGGATAA                GGTG CTTG CACC                 GCATCCGGCATCAAC  57 91
SH03_RS02090 NONE
SH03_RS02085 NONE
SH03_RS02080 NONE
        phnH NONE
SH03_RS02070 NONE
SH03_RS02065 NONE
        phnK  434826 ..  434837 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCACCGGC  64 41
SH03_RS02055  434072 ..  434086 -    -7  -2.52529   GATAATCATGAAGAG               GCTCCC ATT GGGTGC               AGGCGGTCGGCGACG  55 1
SH03_RS02050 NONE
SH03_RS02045 NONE
SH03_RS02040 NONE
        phnP  431098 ..  431124 -  -2.2  -4.45083   GGGAGAGGGAGAAAA         CGAGCGCAATAT TCA ATATCGAGCACA         ATCGGTCCCCTCGCC  60 92
SH03_RS02020  428921 ..  428936 -  -6.8  -3.13475   TAAGGGGACAGGTAA              CTCCGC GATG GCGGAA               TTACCTTTTTCTTAT  59 37
SH03_RS02015  427814 ..  427828 -  -8.6  -2.91264   CCCGCCATCGATATA               TATGGC GTG GCCATA               AATAACCTCTCTGCA  65 151
SH03_RS02010 NONE
SH03_RS02005 NONE
SH03_RS02000 NONE
SH03_RS01995 NONE
SH03_RS01990  421420 ..  421451 - -10.9  -4.65933   TATTTTTAAAATAAA      TACTTTTGGGGGC TTCAGC GCCCCCAAAAGCG       AGTGACATTAATTTG 100 33
SH03_RS01985 NONE
SH03_RS01980 NONE
SH03_RS01975 NONE
SH03_RS01970  416379 ..  416404 - -11.9  -4.10552   CGTGACGAAACGAAA         TACCGCGTGAC AGCC ATCACGCGGCA          GACATTTTATTTTTT 100 32
SH03_RS01965  415785 ..  415808 -    -6  -2.53581   CAGACCTGCAACCGA          TGGGC-CGTGT CAG ACACGAGCGCA          GCAGTCAACGTTATT  52 11
SH03_RS01960  414032 ..  414051 - -13.6  -5.66684   GAATGGATAAAAAAA            CAGCCTCC GAAA GGAGGCTG             TAGAAAGGACGGTAT 100 40
SH03_RS01955  413105 ..  413134 - -12.9  -3.30124   TTGTAGGTCGGATAA       GGCGTTTATGCCG CATC CGACATCAACGCC        TGATGCGACGCTTAA 100 174
SH03_RS01910  402301 ..  402332 -   -13  -2.60392   CATCCGGCAATCAAT      GCCTGATGCGACGC TGTC GCGTCTTATCAGGC       CTACAAACCGTTACC  91 64
SH03_RS01905 NONE
        actP  400178 ..  400201 - -16.8  -2.79321   GGGAGAGGAAGAGTA          TTCCCCGGTC AGAC GACCGGGGAA           GGGGAGAGATTAATG 100 35
SH03_RS01895  398607 ..  398665 - -15.5  -2.76456   AAAGCGACGTAACCA GGCCCGAGGTAATCTGAAAAAGGTGCAA TCTT TTGCACCTTTAACAGGTTAGCTCGGG-C TAACATTCATGATTC 100 101
SH03_RS01875  393983 ..  394012 - -12.9  -3.19389   CAATGGATGGAGCAA       TTACCCGCGCG GGAGTTAA CGCGCGGGCAA        TAAAATTACAGGCGG  95 31
SH03_RS01865  391689 ..  391711 - -13.5  -5.28176   GCCAGCCATAAAAAA           GAAGCCTCC GTTAT GGAGGCTTC           TACGTATCAGGTCAA 100 32
SH03_RS01855  387981 ..  387999 - -12.4  -4.55128   ACTCTGAAAGGAAAA             GGCCGCTC AGA AAGCGGCC             TTAACGATTACAGCA 100 33
SH03_RS01835  385275 ..  385298 - -14.6  -3.79668   ATGTAATGCAGGAAA          GCAGGCTGGA GCTA CCCAGCCTGC           AGTGAAATTAAACTG 100 214
SH03_RS01815  380177 ..  380197 - -12.6  -5.00267   AACTATAAAAAGAAA            GGGCTTCC CAGGT GGAAGCCC            TATTTCTTTTATGGA 100 34
SH03_RS01790  376152 ..  376171 -  -4.3  -4.77567   ACGTTCAGAAGAAAA            GTGAACG TACTCT CATTCAC             AACCTAACGATGAGG  71 300
SH03_RS01765  370859 ..  370876 - -11.3   -5.1101   TGATGATGTAAAAAA             GCCGGAT GATC ATCCGGC              TTTCTTCTGGGTTGC 100 150
SH03_RS01725 NONE
        malE  362090 ..  362123 -  -9.5  -2.88118   TTATCCGACAACAAC     TGCCTGATGCGACGC TGAC GCGTCTTATCAGGCC      TACATACGTTTCGGT  70 89
        malF NONE
        malG  359496 ..  359513 - -12.7  -5.99154   GACGAAAGAAAAAAA             GGCGCTC CGTG GAGCGCC              GAATAACAGTCACAA 100 96
        xylE  357697 ..  357729 - -11.4  -4.73388   AAGCGGGAGTAAAAA     GT-CAGCACGCCG AAATGGCG CGGCGTGCTGGAC      AGGAAGATTACAGCG 100 33
SH03_RS01690  356700 ..  356727 -  -8.5   -3.6215   CTAAGTCATGGGAAA        GGTGCCAGT TTTCGCACTC ACTGGCACC         TTCATTCTTAATGGC  73 33
SH03_RS01665 NONE
SH03_RS01660  351615 ..  351663 -   -13  -3.30243   ATGTAGGCCGGATAA GGCGTTCACGCCGCATCCGGCA ACCGA TGCCTGATGCGACGCGGTCGCG TCTTATCAGGCCTAC 100 73
SH03_RS01650  348029 ..  348058 -  -7.2  -3.85542   TGACAAGAAAATCAA       TACGGCCCGAAA TATAGC TTCCAGGCCATA        CAGTATTTACTCAAA  70 32
SH03_RS01645  347342 ..  347362 -  -4.5  -4.61527   AAAACGGCGGAAAAA            GGCGGTCGC CCG GCGTCCAAC            GGTAAGCGTTTTACC  72 203
SH03_RS01635  345607 ..  345627 - -11.2  -3.45742   GCACTATGAACAAGA            TGCCGGAT CATGC ATCCGGCA            ATTCACTTAAAAACG  83 32
SH03_RS01620  338729 ..  338739 -  -2.6  -2.80079   AACAGTGAAAAAATT                 TAAT ATG ATTA                 CAACTAAAGAAATAT  42 271
SH03_RS01615  335978 ..  335993 -  -6.8  -5.07053   AAGCAGCGGAAAAAA              TCACCG ATCT CGGCGA               ACAAATTGTGATTCG  90 514
SH03_RS01590  329354 ..  329374 - -10.4  -5.05228   ATCAAATTAGAAAAA           CCCCGGTCC ATAA GG-CCGGGG            TTTTTTGCATATCAA 100 512
SH03_RS01560 NONE
SH03_RS01555 NONE
        purH NONE
SH03_RS01545  320750 ..  320777 - -10.4  -4.36914   CGGCGCTGGAGAAAA        CGGGCGGCAACA AAAC CGAAGCCGCCCG         TCAGTTAGGGATCAC  90 71
        zraP  316979 ..  317020 -  -4.5  -2.62616   GCAGTGGCGATACCA CGA-CGCGAGAGTATCGC TGGCAGG GCGATAACCTCACGCTCA TCAATATCAATGTTT  45 449
SH03_RS01495  312463 ..  312478 -  -7.5  -3.15008   TCCGACAAGAAATTA              GCCCC GCAAAT GGGGC               ATTGAATGTAAATTA  62 60
SH03_RS01490 NONE
SH03_RS01485 NONE
SH03_RS01480 NONE
SH03_RS01475 NONE
SH03_RS01470 NONE
        thiH  306507 ..  306532 - -14.1  -4.17762   CAGCCCTCAAAATAA         CAAAACCCACC TTAA GGTGGGTTTCG          CCAGAGAATTATCTC 100 409
SH03_RS01390 NONE
SH03_RS01385  290233 ..  290250 -  -8.4  -4.80417   CAGAAAAATAAGAAA             GGGGAG TATTCG CTCCCC              TGCAAATTATTTGCG 100 32
SH03_RS01340  278006 ..  278020 -  -4.2  -4.79752   GTGAACAAGAGAAAA               CCGCAA TTA TTCCGG               GAAATGTGAAGGACG  71 444
SH03_RS01325  275274 ..  275287 -  -4.5   -3.1552   GGCTATCTATGAAGA               TCACC CGTG GGCGA                ACCGCGAATGCGTAC  49 397
SH03_RS01300 NONE
SH03_RS01295  269504 ..  269519 -    -4  -3.56594   TCAAATGCTGCGAAA              TCGCTT CAGC AAACGA               ATAAATAGCAGGAAT  52 91
SH03_RS01290  266677 ..  266698 - -13.7  -4.41206   AAGTATTTCAGAAAA           CCCTCGCGC AAAA GCACGAGGG            TTTGCAGAAGAGGAA 100 43
SH03_RS01285  264716 ..  264760 - -17.3  -3.53811   CGGATGTGGCGTAAA CGCCTTATCCAGCCTACCG CCGCGAT CTGTAGGCCGGATAAGACG CGTCAAGCGTCGCAT 100 66
SH03_RS01280  263567 ..  263579 -  -9.1  -2.82834   TAGCGGATGAGGATA                TCCGC CGG GCGGA                TGTTGCTCTGTTGAT  63 181
SH03_RS01250 NONE
SH03_RS01245 NONE
        gldA  254171 ..  254189 - -11.7  -3.53343   AATTTTGCGTTCAAA             CTCCCGG ACAAG CCGGGAG             TTTGGAGTAGGTTAT  89 37
SH03_RS01235  254046 ..  254062 -  -7.9  -2.62983   GGGAGTTTCAGATTA              CTGGCAC AGA GTGCCGG              ATGCGGAGTGAACGC  60 1
SH03_RS01230  252834 ..  252848 -  -4.2  -4.25104   TCTCTTCGATGAAAA               GTGCCA TGC TGGCAA               TCCTCTCCGGCGTCA  62 486
SH03_RS01210  248167 ..  248184 -  -2.6     -2.54   AGCAGGTTACAACAT             CGAACC GGATCA GGTACG              TGTGGAATCGCTGGT  38 516
SH03_RS01195 NONE
SH03_RS01190  243516 ..  243529 -  -9.5  -5.02074   GGATTTCCGAAAAAA               GCGCC GCAC GGCGC                TTTTTTTGTGCCTGA 100 53
SH03_RS01180 NONE
SH03_RS01175  239507 ..  239520 -  -5.2  -2.82987   GCAATAGCGACCATA               GCGG GAGAAA CCGC                AGGCAGATTTCGTTG  50 207
SH03_RS01170  238594 ..  238613 - -13.6  -4.05991   AATACAGAGTACAAA            CCCCGTAC AAAA GTACGGGG             CATAATGCAATTATA 100 63
SH03_RS01165 NONE
        hslU  236639 ..  236656 -  -9.1  -5.06816   ACGCGCCAATAAAAA             TGGGGCC TTTC AGCCCCA              TCAAACAATGATGAA 100 56
SH03_RS01155  235669 ..  235683 -  -5.8  -3.08032   CTGTTGGCAAAATCA               TCAATT GTT AATTGA               TATTTGTCAGTTATG  55 36
SH03_RS01150  235093 ..  235108 - -10.4  -5.31456   GTAACGCAGAAAAAA              GGCACC TTGC GGTGCC               TTTCTTATCATTCAA 100 33
SH03_RS01140 NONE
        glpK NONE
SH03_RS01130  230798 ..  230819 - -13.1   -5.7946   CTCCGAACAAAAAAA           TTCCAGTCC CGAA GGACTGGAA            GGCTCAATCGATCAA 100 46
SH03_RS01125  229734 ..  229756 - -10.8  -3.41024   CCCTGCAACAGAAGA           TATTCTTCAA TTG TTGAAGAATA           AGTCGGATAACAAGC  76 266
SH03_RS01105  227815 ..  227835 -  -5.4  -3.41962   GCGAATAAAGGAAGA           TGGCCGCCC CGCA GGGCAGC-A            GGTCTGTGAAACAGT  57 76
SH03_RS01100  226979 ..  227001 - -13.5   -3.6187   AGTTAAGGAAAGTAA           GTGCCGGAT ATGAA ATCCGGCAC           CTGTCAGACTTAAGC 100 35
SH03_RS01070 NONE
        cpxA  219791 ..  219805 -   -10  -3.30124   GTGTAGGCCTGATAA               GACGCT ATC AGCGTC               GCATCAGGCATCCTG  76 93
SH03_RS01050  217438 ..  217452 -  -5.6   -4.6902   GCAGAATTTGAAAAA               GCGGCA GCT TCCCGC               TTTGGTTCCGGCTGG  75 315
SH03_RS01040  215240 ..  215266 - -10.1  -3.05596   GATTCCGGGATTTAA         CGCCAGCGCAG GGCAA CCACACTGGCG         CTTAGGTAGCATGGG  69 521
        rhaB NONE
SH03_RS01015  210601 ..  210647 - -14.3  -2.57931   CGTAGGCCGGATAAG GCGCTCGCGCCGCATCCGGCA ATCAA TGCCTGATGCGACGCTGTCGC GTCTTATCAGGCCTA  95 372
SH03_RS01010 NONE
SH03_RS01005  209363 ..  209386 -   -11  -2.86093   CGAAATTTAAAATAT          TGTGCCGGAG GCAT CTCTGGCACA           TTGGGCAATTACGGC  77 34
SH03_RS01000 NONE
SH03_RS00995 NONE
SH03_RS00990 NONE
SH03_RS00985  204347 ..  204377 -   -14  -2.97475   TTTTTGATGATAAAT       GCAGTGTCGGATGC GGC GCATCCGACACAGT       TCACCCCTTGTGAAG 100 26
SH03_RS00970 NONE
SH03_RS00965 NONE
SH03_RS00960 NONE
SH03_RS00955 NONE
SH03_RS00950  196459 ..  196471 -  -4.7  -3.62864   TAAATTGAGGCCAAA                CCGGC ACT GGCGG                CATAGCTTGAGGTGG  57 124
SH03_RS00945  196251 ..  196262 -    -3  -5.09426   GGTAATGGGAAAAAA                TGAT GTCA ATCA                 GATTGCTGACAACGT  75 19
SH03_RS00900 NONE
SH03_RS00895 NONE
SH03_RS00890  186668 ..  186696 - -12.6  -2.61274   GGCACCTTAATTAAC       GACATACAGCCTC CCGT GAGGCTG-ATGTC        AAACCCAAAAACTGC  88 115
SH03_RS00885  185634 ..  185644 -  -2.6  -3.01857   CATAAAACTGATATA                 TAAA AAC TTTA                 CAGAAGCTGAGCTGT  43 127
SH03_RS00880 NONE
SH03_RS00875  182053 ..  182066 -  -9.5  -3.30619   AATCACTCCTTATAA               CGCCC CGCA GGGCG                TCGTTTATTATTATT  74 39
SH03_RS00870  180590 ..  180604 -    -7  -2.64472   CATTTTTTAAACGTA               GGGAGG CCG CCACCC               ACCAGGATGGAAATA  56 55
        ompL  179788 ..  179812 - -11.5  -3.37612   CTGAAGCTTAATTAA          TGGCCGGAT GTGCTTA ATCCGGCCA          ACGAAAACCGTATCA  86 87
SH03_RS00840 NONE
        glnA  172705 ..  172722 -    -7  -5.28176   TTGACGGAGAAAAAA             GCCCAT GCAGAG ATGGGC              TACAGATAGCTGACA  89 199
        glnL NONE
        glnG  170132 ..  170155 -  -3.1   -3.5947   AATCTTTACACACAA          GCTGTGAAT CACTCC ATCCCCAGC           TCTTTTAACTTACGC  51 10
SH03_RS00820  169815 ..  169868 - -16.1  -2.57931   TGTAGGCCGGATAAG GCGTTTA-CGCCGCATCAGGCATC TGAGCAT GATGCCTGATGCGGCGCTGGTCGC GTCTTATCAGGCCTA 100 75
SH03_RS00805  166359 ..  166385 -  -7.2  -2.55392   AATCTATTGAATTTA         CGGGCCGGATAC GCC ACATCCGGCACA         AGCATTAAGGCAAGA  58 44
SH03_RS00795  162892 ..  162902 -  -8.2   -3.9122   CAGTGCGCTAAAGAA                 GCGC AAG GCGC                 AGATTTTAGCAGAAA  77 116
SH03_RS00790  161905 ..  161938 -   -14  -3.73042   TTGTTCATTAAAATA     CTCACTCGCCTCTG CTCATT CAGAGGCGAGTAAA      ACTTACTTATTCTGA 100 28
        mobA NONE
SH03_RS00760  157134 ..  157167 -  -7.3  -5.60993   TGGCGCAGAAAAAAA     TGCCGGATGCGACGC TGGC GCGTCTTATCCAGCC      TACTCTTGCTTATCC 100 35
        fadB NONE
        fadA  143512 ..  143530 -  -9.5  -5.76633   TGAGATATAAAAAAA             CCCGCCC CTGAC AGGCGGG             AAGAACGGCAACTAA 100 375
        rfaH  140545 ..  140558 -  -4.5  -2.52623   TGGCGTGGAGAAGAT               GCC-GC ATG GCTGGC               TGCCACCACGGATGC  44 71
SH03_RS00640  131594 ..  131614 - -16.9  -3.92659   GGGGTAAAATCCAAA            CCGGGTGGT AAT ACCACCCGG            TCTTTTCTCATTACA 100 36
SH03_RS00630  127936 ..  127954 -  -2.3  -4.41241   GAAATGCGCAGAAAA             TGCCGCA AACCA CGCTGCA             ATGGGGCATTCTGGT  60 205
        rhtB  124672 ..  124701 - -14.3  -3.25823   GCGTCTTCAGAGTAA       GTCGGATAAGGCG TTTA CGCCGCATCCGAC        ATTATTTTTCACGCA 100 34
SH03_RS00590  120478 ..  120490 -  -4.8  -3.06261   TTTTAATTGGTAACA                GCAG TTTAC CTGC                TTTTATGTCTTCAAC  50 36
SH03_RS00585  119508 ..  119533 -  -8.3  -3.07043   GTCAGCATGGCAATA         TGCCCACTCTC ATGC AAGAGTCGGCA          TATTTTTTCAGAATA  67 51
SH03_RS00580 NONE
SH03_RS00575  118657 ..  118685 -  -7.4  -3.25177   TTGTAAAAAACGAGA        GCGGTGGCTTAG TCTGG CTAAGCCACCTG        TTATTCAAAGGCTCC  64 30
SH03_RS00560  116182 ..  116197 -    -6  -3.02263   AGAGTGTGTGGAAGA              GGTGCG CCTG CGCGCC               ACGGTAAGCCGCCCG  53 391
        cyaY  109975 ..  110004 - -11.5  -3.14211   ATTTTTCGTGATGAA       CGTGCCGGA-AAGC GAG GCTTATCCGGCATG       CAATCTTAGCGGAAA  84 31
        hemC NONE
        hemD NONE
SH03_RS00505 NONE
SH03_RS00500  102923 ..  102948 -    -6  -2.53164   TTATGTATCAGGAAG         GCCCCGGAGG TGCTTG CCTCCGGGTG          AGAAGGAACTACTGT  52 34
SH03_RS00495  100572 ..  100585 -  -6.7  -3.30124   CTGTAGGCTGGATAA               GATGC GTCA GCATC                GCATCCGGCAAAGGC  61 63
SH03_RS00380   80555 ..   80568 -  -5.3  -2.73364   CTTTCACCTGAATCA               CTTAC TACA GTAAG                CTCATCGGGATTCAT  49 93
SH03_RS00375   78790 ..   78805 - -10.4  -3.90922   ACGCTGTGTAAAGAA              CGCCGT CAGT ACGGCG               AACTGGTGCGCCCGG  81 236
SH03_RS00365   76188 ..   76204 - -13.7  -4.18802   ACATATATGGCAAAA              GCCCGGA AAA TCCGGGC              TTCGCAGGTCCCTCA 100 104
SH03_RS00360   75769 ..   75802 -  -9.7  -4.45083   GGGAGAGGGAGAAAA     CACTCAAGGCCTTCTC CTG GAGAAGGCCTTGC-TA     TTAGTTGCGGTACAG 100 26
SH03_RS00350   73154 ..   73181 -  -9.2  -4.65895   CGGGTTAGGGAAAAA        TGCCTGAT-AGCG CTT CGCTTATCAGGCC        TACCCGCGCGACAAC 100 42
SH03_RS00315   64702 ..   64714 -  -6.2  -5.15167   GACGATTAATAAAAA                GGGC GAAAT GCCC                TTTTTTTATGTCAGT  87 31
SH03_RS00305   62937 ..   62958 -  -8.7  -3.91196   CTGATACAGATTAAA           TCAGAACGC AGAA GCGGTCTGA            TGAAACAGAATTTGC  80 466
SH03_RS00270 NONE
SH03_RS00265   55427 ..   55440 -  -4.5  -2.60079   CCATCGGATAACCCA               GCCGA CCCT TCAGC                AACAACGATTACAAC  45 41
SH03_RS00225 NONE
SH03_RS00220   44286 ..   44304 - -10.2  -2.71712   GCTGCGCGGTGAAAT             GCCGCAGA CCA TCGGCGGC             GGTATCGGCCAGTCT  67 144
SH03_RS00210   42731 ..   42753 -  -8.5  -2.92102   ATATCTGCCATAAAC          CGCCAC-CTT TATT AAGAGTGGCG           TATTGTACGCTGTGA  65 88
SH03_RS00205   42198 ..   42212 -  -7.2  -2.66977   CACAACTCAAAAACT               GAACAA CAG TTGTTC               TTTGGATAACTACCG  58 96
        gidA NONE
        gidB   39203 ..   39240 -  -5.2  -5.52384   TGCTTACCAAAAAAA  GCCACGTT-A-TCTTGTTG ATG CAA-AAGAGTGAACGTGGC  GTTAAATGTAACCAG  87 113
SH03_RS00190 NONE
SH03_RS00185 NONE
SH03_RS00180   37215 ..   37227 -  -3.3  -3.88331   TTTAAATAAAAGCAA                CGCTT ACT ACGCG                ACAGCGAACATCACG  53 19
SH03_RS00175 NONE
SH03_RS00170 NONE
SH03_RS00165 NONE
SH03_RS00160   33678 ..   33693 -  -2.4  -3.56366   AATAACCTGTTTAAA              CCGCGG CGGC CCCCGA               GACGATCTCGGTGAG  47 5
SH03_RS00155 NONE
        atpC   31780 ..   31801 - -12.3  -5.76949   CACGCGCAAAAAAAA           GCCAGCCTG TTTC CAGACTGGC            TTTTGTGCTTTTCAA 100 48
        glmU NONE
SH03_RS00140   28082 ..   28101 - -11.4  -5.19251   TAACAGGAAGAAAAA            TGCCCCGC TTAC GCAGGGCA             TCCATTTATTACTCA 100 34
SH03_RS00135   26764 ..   26775 -  -7.2  -2.82635   AGTTTTATTAGTACA                GCGG CTTA CCGC                 TACTGTCTTTAATAT  59 6
        pstC NONE
        pstA   24680 ..   24733 -  -4.3  -2.71364   GCACTTCGCTAATCA GGCTTACCGTAGGCCGGATCAGGCG TTCA CGCCGCATCCGGCAAAGTGTTAACC GTGTACAGAGTCAAA  45 112
SH03_RS00120 NONE
SH03_RS00115   23084 ..   23114 - -14.3  -3.63054   TAAAGTTATATATAA       CAAATCCCAATAA TTAAG TTATTGGGATTTG       TCTGGTGAATTATTT 100 35
SH03_RS00110   21924 ..   21941 -  -4.1  -2.91328   AACCTGAAAAAAACG             GCCTGAC GTGA ATCAAGC              AATTTTTTTCAGGTT  47 86
SH03_RS00105 NONE
SH03_RS00100   18528 ..   18553 - -12.7  -2.64572   GAAAGAATTAACGCA         TCGCATCCAGA CTGT TCTGAATGCGA          CGATAATTAAGGTGC  88 32
SH03_RS00095 NONE
SH03_RS00090 NONE
SH03_RS00085   14901 ..   14928 - -10.6  -3.39438   TAAATAATGAGAACA        GGCCGGA-GCGTA ATT CACACATCCGGCC        TTATTTCTTAAGCTT  78 39
SH03_RS00065   11498 ..   11522 - -12.2  -5.65927   GATCTAAATAAAAAA         CCCGCCA-GCA ATCA TGCATGGCGGG          TTTTTAACGCGCTAT 100 46
