locus-tag class description SH06_RS00005 PF00468 Ribosomal protein L34 SH06_RS00010 PF00825 Ribonuclease P SH06_RS00015 PF01809 Putative membrane protein insertion efficiency factor SH06_RS00020 PF14849 YidC periplasmic domain SH06_RS00020 PF02096 60Kd inner membrane protein SH06_RS00025 PF01926 50S ribosome-binding GTPase SH06_RS00025 PF12631 MnmE helical domain SH06_RS00025 PF10396 GTP-binding protein TrmE N-terminus SH06_RS00030 PF08053 Tryptophanase operon leader peptide SH06_RS00035 PF01212 Beta-eliminating lyase SH06_RS00040 PF03222 Tryptophan/tyrosine permease family SH06_RS00045 PF07690 Major Facilitator Superfamily SH06_RS00050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS00050 PF03466 LysR substrate binding domain SH06_RS00060 PF03358 NADPH-dependent FMN reductase SH06_RS00065 PF00860 Permease family SH06_RS00070 PF13419 Haloacid dehalogenase-like hydrolase SH06_RS00080 PF03691 Uncharacterised protein family (UPF0167) SH06_RS00085 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH06_RS00090 PF00756 Putative esterase SH06_RS00090 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH06_RS00095 PF02264 LamB porin SH06_RS00095 PF11471 Maltoporin periplasmic N-terminal extension SH06_RS00100 PF00232 Glycosyl hydrolase family 1 SH06_RS00105 PF00367 phosphotransferase system, EIIB SH06_RS00105 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH06_RS00105 PF02378 Phosphotransferase system, EIIC SH06_RS00110 PF03123 CAT RNA binding domain SH06_RS00110 PF00874 PRD domain SH06_RS00115 PF01895 PhoU domain SH06_RS00120 PF00005 ABC transporter SH06_RS00125 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS00130 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS00135 PF12849 PBP superfamily domain SH06_RS00140 PF01380 SIS domain SH06_RS00145 PF00132 Bacterial transferase hexapeptide (six repeats) SH06_RS00145 PF14602 Hexapeptide repeat of succinyl-transferase SH06_RS00145 PF12804 MobA-like NTP transferase domain SH06_RS00150 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SH06_RS00150 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SH06_RS00155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH06_RS00155 PF02874 ATP synthase alpha/beta family, beta-barrel domain SH06_RS00160 PF00231 ATP synthase SH06_RS00165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH06_RS00165 PF00306 ATP synthase alpha/beta chain, C terminal domain SH06_RS00165 PF02874 ATP synthase alpha/beta family, beta-barrel domain SH06_RS00170 PF00213 ATP synthase delta (OSCP) subunit SH06_RS00175 PF00430 ATP synthase B/B' CF(0) SH06_RS00180 PF00137 ATP synthase subunit C SH06_RS00185 PF00119 ATP synthase A chain SH06_RS00190 PF03899 ATP synthase I chain SH06_RS00195 PF02527 rRNA small subunit methyltransferase G SH06_RS00200 PF01134 Glucose inhibited division protein A SH06_RS00200 PF13932 GidA associated domain SH06_RS00205 PF00258 Flavodoxin SH06_RS00210 PF01037 Lrp/AsnC ligand binding domain SH06_RS00215 PF03590 Aspartate-ammonia ligase SH06_RS00220 PF05762 VWA domain containing CoxE-like protein SH06_RS00225 PF07728 AAA domain (dynein-related subfamily) SH06_RS00225 PF12592 Protein of unknown function (DUF3763) SH06_RS00225 PF17868 AAA lid domain SH06_RS00230 PF02705 K+ potassium transporter SH06_RS00235 PF05025 RbsD / FucU transport protein family SH06_RS00240 PF00005 ABC transporter SH06_RS00245 PF02653 Branched-chain amino acid transport system / permease component SH06_RS00250 PF13407 Periplasmic binding protein domain SH06_RS00255 PF00294 pfkB family carbohydrate kinase SH06_RS00260 PF00356 Bacterial regulatory proteins, lacI family SH06_RS00265 PF07690 Major Facilitator Superfamily SH06_RS00270 PF07729 FCD domain SH06_RS00270 PF00392 Bacterial regulatory proteins, gntR family SH06_RS00305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS00305 PF03466 LysR substrate binding domain SH06_RS00310 PF04219 Protein of unknown function, DUF SH06_RS00315 PF01078 Magnesium chelatase, subunit ChlI SH06_RS00315 PF13335 Magnesium chelatase, subunit ChlI C-terminal SH06_RS00320 PF08046 IlvGEDA operon leader peptide SH06_RS00335 PF01063 Amino-transferase class IV SH06_RS00340 PF00920 Dehydratase family SH06_RS00345 PF00291 Pyridoxal-phosphate dependent enzyme SH06_RS00345 PF00585 C-terminal regulatory domain of Threonine dehydratase SH06_RS00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS00350 PF03466 LysR substrate binding domain SH06_RS00355 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SH06_RS00355 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SH06_RS00370 PF13361 UvrD-like helicase C-terminal domain SH06_RS00370 PF00580 UvrD/REP helicase N-terminal domain SH06_RS00375 PF02541 Ppx/GppA phosphatase family SH06_RS00380 PF00270 DEAD/DEAH box helicase SH06_RS00380 PF00271 Helicase conserved C-terminal domain SH06_RS00385 PF00085 Thioredoxin SH06_RS00395 PF07497 Rho termination factor, RNA-binding domain SH06_RS00395 PF07498 Rho termination factor, N-terminal domain SH06_RS00395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH06_RS00405 PF00953 Glycosyl transferase family 4 SH06_RS00410 PF02706 Chain length determinant protein SH06_RS00415 PF02350 UDP-N-acetylglucosamine 2-epimerase SH06_RS00420 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SH06_RS00420 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SH06_RS00420 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SH06_RS00425 PF16363 GDP-mannose 4,6 dehydratase SH06_RS00430 PF00483 Nucleotidyl transferase SH06_RS00440 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SH06_RS00445 PF01943 Polysaccharide biosynthesis protein SH06_RS00450 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 SH06_RS00455 PF06899 WzyE protein, O-antigen assembly polymerase SH06_RS00460 PF03808 Glycosyl transferase WecB/TagA/CpsF family SH06_RS00465 PF00324 Amino acid permease SH06_RS00490 PF13186 Iron-sulfur cluster-binding domain SH06_RS00490 PF04055 Radical SAM superfamily SH06_RS00495 PF00884 Sulfatase SH06_RS00500 PF07719 Tetratricopeptide repeat SH06_RS00500 PF07219 HemY protein N-terminus SH06_RS00505 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase SH06_RS00510 PF02602 Uroporphyrinogen-III synthase HemD SH06_RS00515 PF03900 Porphobilinogen deaminase, C-terminal domain SH06_RS00515 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SH06_RS00520 PF12633 Adenylate cyclase NT domain SH06_RS00520 PF01295 Adenylate cyclase, class-I SH06_RS00525 PF01491 Frataxin-like domain SH06_RS00530 PF13627 Prokaryotic lipoprotein-attachment site SH06_RS00535 PF01678 Diaminopimelate epimerase SH06_RS00545 PF02899 Phage integrase, N-terminal SAM-like domain SH06_RS00545 PF00589 Phage integrase family SH06_RS00550 PF13419 Haloacid dehalogenase-like hydrolase SH06_RS00555 PF13361 UvrD-like helicase C-terminal domain SH06_RS00555 PF00580 UvrD/REP helicase N-terminal domain SH06_RS00560 PF09992 Phosphodiester glycosidase SH06_RS00570 PF01544 CorA-like Mg2+ transporter protein SH06_RS00575 PF10947 Protein of unknown function (DUF2628) SH06_RS00585 PF00892 EamA-like transporter family SH06_RS00590 PF03061 Thioesterase superfamily SH06_RS00595 PF02253 Phospholipase A1 SH06_RS00600 PF00570 HRDC domain SH06_RS00600 PF16124 RecQ zinc-binding SH06_RS00600 PF09382 RQC domain SH06_RS00600 PF00270 DEAD/DEAH box helicase SH06_RS00600 PF00271 Helicase conserved C-terminal domain SH06_RS00605 PF01810 LysE type translocator SH06_RS00610 PF01810 LysE type translocator SH06_RS00615 PF12146 Serine aminopeptidase, S33 SH06_RS00625 PF00892 EamA-like transporter family SH06_RS00630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS00630 PF03466 LysR substrate binding domain SH06_RS00635 PF01717 Cobalamin-independent synthase, Catalytic domain SH06_RS00635 PF08267 Cobalamin-independent synthase, N-terminal domain SH06_RS00640 PF01738 Dienelactone hydrolase family SH06_RS00645 PF01048 Phosphorylase superfamily SH06_RS00650 PF02646 RmuC family SH06_RS00655 PF01209 ubiE/COQ5 methyltransferase family SH06_RS00660 PF02036 SCP-2 sterol transfer family SH06_RS00665 PF03109 ABC1 family SH06_RS00670 PF02416 mttA/Hcf106 family SH06_RS00680 PF00902 Sec-independent protein translocase protein (TatC) SH06_RS00685 PF01026 TatD related DNase SH06_RS00690 PF02357 Transcription termination factor nusG SH06_RS00695 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SH06_RS00700 PF00970 Oxidoreductase FAD-binding domain SH06_RS00700 PF00175 Oxidoreductase NAD-binding domain SH06_RS00705 PF02803 Thiolase, C-terminal domain SH06_RS00705 PF00108 Thiolase, N-terminal domain SH06_RS00710 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH06_RS00710 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH06_RS00710 PF00378 Enoyl-CoA hydratase/isomerase SH06_RS00715 PF00557 Metallopeptidase family M24 SH06_RS00720 PF01205 Uncharacterized protein family UPF0029 SH06_RS00720 PF09186 Domain of unknown function (DUF1949) SH06_RS00725 PF02386 Cation transport protein SH06_RS00730 PF12724 Flavodoxin domain SH06_RS00760 PF03205 Molybdopterin guanine dinucleotide synthesis protein B SH06_RS00765 PF12804 MobA-like NTP transferase domain SH06_RS00770 PF06288 Protein of unknown function (DUF1040) SH06_RS00775 PF01636 Phosphotransferase enzyme family SH06_RS00780 PF01323 DSBA-like thioredoxin domain SH06_RS00785 PF06097 Bacterial protein of unknown function (DUF945) SH06_RS00790 PF01553 Acyltransferase SH06_RS00800 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SH06_RS00800 PF01367 5'-3' exonuclease, C-terminal SAM fold SH06_RS00800 PF00476 DNA polymerase family A SH06_RS00800 PF01612 3'-5' exonuclease SH06_RS00805 PF01926 50S ribosome-binding GTPase SH06_RS00810 PF04220 Der GTPase activator (YihI) SH06_RS00815 PF06969 HemN C-terminal domain SH06_RS00815 PF04055 Radical SAM superfamily SH06_RS00825 PF02954 Bacterial regulatory protein, Fis family SH06_RS00825 PF00158 Sigma-54 interaction domain SH06_RS00825 PF00072 Response regulator receiver domain SH06_RS00830 PF00989 PAS fold SH06_RS00830 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS00830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS00835 PF03951 Glutamine synthetase, beta-Grasp domain SH06_RS00835 PF00120 Glutamine synthetase, catalytic domain SH06_RS00845 PF00679 Elongation factor G C-terminus SH06_RS00845 PF00009 Elongation factor Tu GTP binding domain SH06_RS00845 PF03144 Elongation factor Tu domain 2 SH06_RS00850 PF07702 UTRA domain SH06_RS00850 PF00392 Bacterial regulatory proteins, gntR family SH06_RS00855 PF01261 Xylose isomerase-like TIM barrel SH06_RS00860 PF07690 Major Facilitator Superfamily SH06_RS00865 PF06178 Oligogalacturonate-specific porin protein (KdgM) SH06_RS00880 PF01055 Glycosyl hydrolases family 31 SH06_RS00885 PF01263 Aldose 1-epimerase SH06_RS00895 PF01791 DeoC/LacD family aldolase SH06_RS00900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH06_RS00900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH06_RS00905 PF00294 pfkB family carbohydrate kinase SH06_RS00910 PF00455 DeoR C terminal sensor domain SH06_RS00910 PF08220 DeoR-like helix-turn-helix domain SH06_RS00915 PF13419 Haloacid dehalogenase-like hydrolase SH06_RS00920 PF03631 Virulence factor BrkB SH06_RS00925 PF02580 D-Tyr-tRNA(Tyr) deacylase SH06_RS00930 PF09500 Putative thioesterase (yiiD_Cterm) SH06_RS00930 PF00583 Acetyltransferase (GNAT) family SH06_RS00935 PF01402 Ribbon-helix-helix protein, copG family SH06_RS00950 PF04216 Protein involved in formate dehydrogenase formation SH06_RS00955 PF01292 Prokaryotic cytochrome b561 SH06_RS00960 PF13247 4Fe-4S dicluster domain SH06_RS00960 PF09163 Formate dehydrogenase N, transmembrane SH06_RS00965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS00965 PF00384 Molybdopterin oxidoreductase SH06_RS00965 PF01568 Molydopterin dinucleotide binding domain SH06_RS00970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS00970 PF00384 Molybdopterin oxidoreductase SH06_RS00970 PF01568 Molydopterin dinucleotide binding domain SH06_RS00975 PF02634 FdhD/NarQ family SH06_RS00980 PF12889 Protein of unknown function (DUF3829) SH06_RS00985 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH06_RS00985 PF08279 HTH domain SH06_RS00990 PF05343 M42 glutamyl aminopeptidase SH06_RS00995 PF02378 Phosphotransferase system, EIIC SH06_RS00995 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH06_RS01000 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH06_RS01005 PF05336 L-rhamnose mutarotase SH06_RS01010 PF00596 Class II Aldolase and Adducin N-terminal domain SH06_RS01015 PF06134 L-rhamnose isomerase (RhaA) SH06_RS01020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH06_RS01020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH06_RS01030 PF12833 Helix-turn-helix domain SH06_RS01030 PF02311 AraC-like ligand binding domain SH06_RS01035 PF12833 Helix-turn-helix domain SH06_RS01035 PF02311 AraC-like ligand binding domain SH06_RS01040 PF06379 L-rhamnose-proton symport protein (RhaT) SH06_RS01045 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SH06_RS01045 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SH06_RS01055 PF03812 2-keto-3-deoxygluconate permease SH06_RS01060 PF03473 MOSC domain SH06_RS01060 PF03475 3-alpha domain SH06_RS01065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS01065 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS01065 PF16527 Two-component sensor protein CpxA, periplasmic domain SH06_RS01065 PF00672 HAMP domain SH06_RS01070 PF00072 Response regulator receiver domain SH06_RS01070 PF00486 Transcriptional regulatory protein, C terminal SH06_RS01075 PF07813 LTXXQ motif family protein SH06_RS01080 PF01545 Cation efflux family SH06_RS01080 PF16916 Dimerisation domain of Zinc Transporter SH06_RS01085 PF00365 Phosphofructokinase SH06_RS01095 PF02611 CDP-diacylglycerol pyrophosphatase SH06_RS01100 PF00121 Triosephosphate isomerase SH06_RS01105 PF07305 Protein of unknown function (DUF1454) SH06_RS01110 PF05656 Protein of unknown function (DUF805) SH06_RS01115 PF04175 Protein of unknown function (DUF406) SH06_RS01120 PF00582 Universal stress protein family SH06_RS01125 PF00175 Oxidoreductase NAD-binding domain SH06_RS01125 PF00970 Oxidoreductase FAD-binding domain SH06_RS01130 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded SH06_RS01135 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH06_RS01135 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH06_RS01140 PF00230 Major intrinsic protein SH06_RS01145 PF06005 Cell division protein ZapB SH06_RS01150 PF03737 Aldolase/RraA SH06_RS01155 PF01040 UbiA prenyltransferase family SH06_RS01160 PF07724 AAA domain (Cdc48 subfamily) SH06_RS01160 PF10431 C-terminal, D2-small domain, of ClpB protein SH06_RS01160 PF00004 ATPase family associated with various cellular activities (AAA) SH06_RS01165 PF00227 Proteasome subunit SH06_RS01170 PF05036 Sporulation related domain SH06_RS01175 PF00356 Bacterial regulatory proteins, lacI family SH06_RS01180 PF00270 DEAD/DEAH box helicase SH06_RS01180 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SH06_RS01180 PF18074 Primosomal protein N C-terminal domain SH06_RS01180 PF17764 3′ DNA-binding domain (3′BD) SH06_RS01180 PF00271 Helicase conserved C-terminal domain SH06_RS01185 PF01197 Ribosomal protein L31 SH06_RS01190 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH06_RS01195 PF01340 Met Apo-repressor, MetJ SH06_RS01200 PF01053 Cys/Met metabolism PLP-dependent enzyme SH06_RS01205 PF00696 Amino acid kinase family SH06_RS01205 PF00742 Homoserine dehydrogenase SH06_RS01205 PF03447 Homoserine dehydrogenase, NAD binding domain SH06_RS01215 PF02219 Methylenetetrahydrofolate reductase SH06_RS01220 PF00141 Peroxidase SH06_RS01225 PF00892 EamA-like transporter family SH06_RS01230 PF06940 Domain of unknown function (DUF1287) SH06_RS01240 PF00465 Iron-containing alcohol dehydrogenase SH06_RS01245 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH06_RS01250 PF00381 PTS HPr component phosphorylation site SH06_RS01250 PF02896 PEP-utilising enzyme, TIM barrel domain SH06_RS01250 PF00391 PEP-utilising enzyme, mobile domain SH06_RS01250 PF05524 PEP-utilising enzyme, N-terminal SH06_RS01250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH06_RS01260 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH06_RS01265 PF02901 Pyruvate formate lyase-like SH06_RS01265 PF01228 Glycine radical SH06_RS01270 PF04055 Radical SAM superfamily SH06_RS01275 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH06_RS01280 PF12833 Helix-turn-helix domain SH06_RS01285 PF00884 Sulfatase SH06_RS01290 PF00311 Phosphoenolpyruvate carboxylase SH06_RS01300 PF07687 Peptidase dimerisation domain SH06_RS01300 PF01546 Peptidase family M20/M25/M40 SH06_RS01305 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH06_RS01305 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH06_RS01310 PF00696 Amino acid kinase family SH06_RS01315 PF14698 Argininosuccinate lyase C-terminal SH06_RS01315 PF00206 Lyase SH06_RS01320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS01320 PF03466 LysR substrate binding domain SH06_RS01325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH06_RS01325 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH06_RS01330 PF00440 Bacterial regulatory proteins, tetR family SH06_RS01335 PF07226 Protein of unknown function (DUF1422) SH06_RS01340 PF05958 tRNA (Uracil-5-)-methyltransferase SH06_RS01345 PF07715 TonB-dependent Receptor Plug Domain SH06_RS01345 PF00593 TonB dependent receptor SH06_RS01350 PF01177 Asp/Glu/Hydantoin racemase SH06_RS01375 PF01565 FAD binding domain SH06_RS01375 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SH06_RS01380 PF08279 HTH domain SH06_RS01380 PF03099 Biotin/lipoate A/B protein ligase family SH06_RS01380 PF02237 Biotin protein ligase C terminal domain SH06_RS01385 PF00485 Phosphoribulokinase / Uridine kinase family SH06_RS01415 PF03143 Elongation factor Tu C-terminal domain SH06_RS01415 PF00009 Elongation factor Tu GTP binding domain SH06_RS01415 PF03144 Elongation factor Tu domain 2 SH06_RS01420 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SH06_RS01425 PF02357 Transcription termination factor nusG SH06_RS01425 PF00467 KOW motif SH06_RS01430 PF03946 Ribosomal protein L11, N-terminal domain SH06_RS01430 PF00298 Ribosomal protein L11, RNA binding domain SH06_RS01435 PF00687 Ribosomal protein L1p/L10e family SH06_RS01440 PF00466 Ribosomal protein L10 SH06_RS01445 PF16320 Ribosomal protein L7/L12 dimerisation domain SH06_RS01445 PF00542 Ribosomal protein L7/L12 C-terminal domain SH06_RS01450 PF04563 RNA polymerase beta subunit SH06_RS01450 PF04561 RNA polymerase Rpb2, domain 2 SH06_RS01450 PF10385 RNA polymerase beta subunit external 1 domain SH06_RS01450 PF04565 RNA polymerase Rpb2, domain 3 SH06_RS01450 PF00562 RNA polymerase Rpb2, domain 6 SH06_RS01450 PF04560 RNA polymerase Rpb2, domain 7 SH06_RS01455 PF00623 RNA polymerase Rpb1, domain 2 SH06_RS01455 PF04983 RNA polymerase Rpb1, domain 3 SH06_RS01455 PF05000 RNA polymerase Rpb1, domain 4 SH06_RS01455 PF04998 RNA polymerase Rpb1, domain 5 SH06_RS01455 PF04997 RNA polymerase Rpb1, domain 1 SH06_RS01465 PF04055 Radical SAM superfamily SH06_RS01465 PF06968 Biotin and Thiamin Synthesis associated domain SH06_RS01470 PF05690 Thiazole biosynthesis protein ThiG SH06_RS01475 PF02597 ThiS family SH06_RS01480 PF00899 ThiF family SH06_RS01485 PF02581 Thiamine monophosphate synthase SH06_RS01490 PF01964 Radical SAM ThiC family SH06_RS01490 PF13667 ThiC-associated domain SH06_RS01495 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ SH06_RS01500 PF00293 NUDIX domain SH06_RS01500 PF09297 NADH pyrophosphatase zinc ribbon domain SH06_RS01505 PF01208 Uroporphyrinogen decarboxylase (URO-D) SH06_RS01510 PF04493 Endonuclease V SH06_RS01515 PF04222 Protein of unknown function (DUF416) SH06_RS01520 PF00216 Bacterial DNA-binding protein SH06_RS01525 PF07356 Protein of unknown function (DUF1481) SH06_RS01530 PF13801 Heavy-metal resistance SH06_RS01535 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS01535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS01540 PF00158 Sigma-54 interaction domain SH06_RS01540 PF00072 Response regulator receiver domain SH06_RS01540 PF02954 Bacterial regulatory protein, Fis family SH06_RS01545 PF02844 Phosphoribosylglycinamide synthetase, N domain SH06_RS01545 PF02843 Phosphoribosylglycinamide synthetase, C domain SH06_RS01545 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SH06_RS01550 PF02142 MGS-like domain SH06_RS01550 PF01808 AICARFT/IMPCHase bienzyme SH06_RS01590 PF13673 Acetyltransferase (GNAT) domain SH06_RS01595 PF04204 Homoserine O-succinyltransferase SH06_RS01600 PF01274 Malate synthase SH06_RS01605 PF00463 Isocitrate lyase family SH06_RS01610 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) SH06_RS01615 PF07906 ShET2 enterotoxin, N-terminal region SH06_RS01620 PF01614 Bacterial transcriptional regulator SH06_RS01620 PF09339 IclR helix-turn-helix domain SH06_RS01625 PF02607 B12 binding domain SH06_RS01625 PF02310 B12 binding domain SH06_RS01625 PF02574 Homocysteine S-methyltransferase SH06_RS01625 PF02965 Vitamin B12 dependent methionine synthase, activation domain SH06_RS01625 PF00809 Pterin binding enzyme SH06_RS01630 PF02690 Na+/Pi-cotransporter SH06_RS01635 PF03575 Peptidase family S51 SH06_RS01640 PF00849 RNA pseudouridylate synthase SH06_RS01640 PF01479 S4 domain SH06_RS01645 PF11656 YjbD family (DUF3811) SH06_RS01650 PF01842 ACT domain SH06_RS01650 PF00696 Amino acid kinase family SH06_RS01655 PF00342 Phosphoglucose isomerase SH06_RS01660 PF11106 Exopolysaccharide production protein YjbE SH06_RS01665 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF SH06_RS01670 PF06251 Capsule biosynthesis GfcC SH06_RS01675 PF06082 Exopolysaccharide biosynthesis protein YbjH SH06_RS01680 PF17089 Uncharacterised protein family SH06_RS01690 PF06146 Phosphate-starvation-inducible E SH06_RS01695 PF00083 Sugar (and other) transporter SH06_RS01700 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS01705 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS01705 PF14785 Maltose transport system permease protein MalF P2 domain SH06_RS01710 PF01547 Bacterial extracellular solute-binding protein SH06_RS01720 PF00005 ABC transporter SH06_RS01720 PF17912 MalK OB fold domain SH06_RS01725 PF02264 LamB porin SH06_RS01730 PF07148 Maltose operon periplasmic protein precursor (MalM) SH06_RS01740 PF13599 Pentapeptide repeats (9 copies) SH06_RS01740 PF13981 SopA-like central domain SH06_RS01745 PF04345 Chorismate lyase SH06_RS01750 PF01040 UbiA prenyltransferase family SH06_RS01755 PF01553 Acyltransferase SH06_RS01760 PF01219 Prokaryotic diacylglycerol kinase SH06_RS01765 PF00717 Peptidase S24-like SH06_RS01765 PF01726 LexA DNA binding domain SH06_RS01770 PF01554 MatE SH06_RS01775 PF05532 CsbD-like SH06_RS01780 PF01475 Ferric uptake regulator family SH06_RS01790 PF10897 Protein of unknown function (DUF2713) SH06_RS01795 PF01207 Dihydrouridine synthase (Dus) SH06_RS01800 PF09583 Phage shock protein G (Phageshock_PspG) SH06_RS01805 PF00107 Zinc-binding dehydrogenase SH06_RS01805 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS01810 PF03796 DnaB-like helicase C terminal domain SH06_RS01810 PF00772 DnaB-like helicase N terminal domain SH06_RS01815 PF01168 Alanine racemase, N-terminal domain SH06_RS01815 PF00842 Alanine racemase, C-terminal domain SH06_RS01820 PF00155 Aminotransferase class I and II SH06_RS01830 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SH06_RS01835 PF01894 Uncharacterised protein family UPF0047 SH06_RS01840 PF04237 YjbR SH06_RS01845 PF17760 UvrA interaction domain SH06_RS01845 PF17755 UvrA DNA-binding domain SH06_RS01845 PF00005 ABC transporter SH06_RS01850 PF00436 Single-strand binding protein family SH06_RS01855 PF15940 Family of unknown function SH06_RS01860 PF12792 CSS motif domain associated with EAL SH06_RS01860 PF00563 EAL domain SH06_RS01865 PF12833 Helix-turn-helix domain SH06_RS01870 PF00376 MerR family regulatory protein SH06_RS01870 PF09278 MerR, DNA binding SH06_RS01875 PF00860 Permease family SH06_RS01880 PF00999 Sodium/hydrogen exchanger family SH06_RS01890 PF00474 Sodium:solute symporter family SH06_RS01895 PF04341 Protein of unknown function, DUF485 SH06_RS01900 PF16177 Acetyl-coenzyme A synthetase N-terminus SH06_RS01900 PF00501 AMP-binding enzyme SH06_RS01900 PF13193 AMP-binding enzyme C-terminal domain SH06_RS01905 PF02335 Cytochrome c552 SH06_RS01910 PF13435 Cytochrome c554 and c-prime SH06_RS01910 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) SH06_RS01915 PF00037 4Fe-4S binding domain SH06_RS01915 PF13247 4Fe-4S dicluster domain SH06_RS01920 PF03916 Polysulphide reductase, NrfD SH06_RS01925 PF01578 Cytochrome C assembly protein SH06_RS01925 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SH06_RS01930 PF03918 Cytochrome C biogenesis protein SH06_RS01940 PF00375 Sodium:dicarboxylate symporter family SH06_RS01945 PF08238 Sel1 repeat SH06_RS01950 PF01568 Molydopterin dinucleotide binding domain SH06_RS01950 PF00384 Molybdopterin oxidoreductase SH06_RS01950 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS01955 PF01568 Molydopterin dinucleotide binding domain SH06_RS01955 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS01955 PF00384 Molybdopterin oxidoreductase SH06_RS01960 PF02321 Outer membrane efflux protein SH06_RS01965 PF04632 Fusaric acid resistance protein family SH06_RS01970 PF00529 HlyD membrane-fusion protein of T1SS SH06_RS01970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH06_RS01975 PF17090 Uncharacterised protein family SH06_RS01980 PF00753 Metallo-beta-lactamase superfamily SH06_RS01980 PF14864 Alkyl sulfatase C-terminal SH06_RS01980 PF14863 Alkyl sulfatase dimerisation SH06_RS01985 PF00480 ROK family SH06_RS01990 PF00834 Ribulose-phosphate 3 epimerase family SH06_RS01995 PF02653 Branched-chain amino acid transport system / permease component SH06_RS02000 PF00005 ABC transporter SH06_RS02005 PF13407 Periplasmic binding protein domain SH06_RS02010 PF01380 SIS domain SH06_RS02010 PF01418 Helix-turn-helix domain, rpiR family SH06_RS02015 PF02502 Ribose/Galactose Isomerase SH06_RS02025 PF12706 Beta-lactamase superfamily domain SH06_RS02030 PF00583 Acetyltransferase (GNAT) family SH06_RS02040 PF07969 Amidohydrolase family SH06_RS02045 PF00005 ABC transporter SH06_RS02050 PF00005 ABC transporter SH06_RS02055 PF06007 Phosphonate metabolism protein PhnJ SH06_RS02060 PF05861 Bacterial phosphonate metabolism protein (PhnI) SH06_RS02065 PF05845 Bacterial phosphonate metabolism protein (PhnH) SH06_RS02070 PF06754 Phosphonate metabolism protein PhnG SH06_RS02075 PF07702 UTRA domain SH06_RS02075 PF00392 Bacterial regulatory proteins, gntR family SH06_RS02090 PF00005 ABC transporter SH06_RS02095 PF06983 3-demethylubiquinone-9 3-methyltransferase SH06_RS02100 PF03831 PhnA domain SH06_RS02100 PF08274 PhnA Zinc-Ribbon SH06_RS02105 PF00350 Dynamin family SH06_RS02110 PF13990 YjcZ-like protein SH06_RS02115 PF00083 Sugar (and other) transporter SH06_RS02115 PF08946 Osmosensory transporter coiled coil SH06_RS02125 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS02125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS02130 PF00486 Transcriptional regulatory protein, C terminal SH06_RS02130 PF00072 Response regulator receiver domain SH06_RS02135 PF00884 Sulfatase SH06_RS02135 PF08019 Phosphoethanolamine transferase EptA/EptB SH06_RS02140 PF13520 Amino acid permease SH06_RS02145 PF12833 Helix-turn-helix domain SH06_RS02150 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH06_RS02150 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH06_RS02150 PF01276 Orn/Lys/Arg decarboxylase, major domain SH06_RS02155 PF12833 Helix-turn-helix domain SH06_RS02165 PF11975 Family 4 glycosyl hydrolase C-terminal domain SH06_RS02165 PF02056 Family 4 glycosyl hydrolase SH06_RS02175 PF09997 Predicted membrane protein (DUF2238) SH06_RS02180 PF05681 Fumarate hydratase (Fumerase) SH06_RS02180 PF05683 Fumarase C-terminus SH06_RS02185 PF03605 Anaerobic c4-dicarboxylate membrane transporter SH06_RS02195 PF00072 Response regulator receiver domain SH06_RS02200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS02200 PF00989 PAS fold SH06_RS02200 PF17203 Single cache domain 3 SH06_RS02200 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SH06_RS02205 PF06902 Divergent 4Fe-4S mono-cluster SH06_RS02210 PF14542 GCN5-related N-acetyl-transferase SH06_RS02215 PF11080 Endoribonuclease GhoS SH06_RS02220 PF10753 Toxin GhoT_OrtT SH06_RS02225 PF01336 OB-fold nucleic acid binding domain SH06_RS02225 PF00152 tRNA synthetases class II (D, K and N) SH06_RS02230 PF00854 POT family SH06_RS02235 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH06_RS02235 PF01276 Orn/Lys/Arg decarboxylase, major domain SH06_RS02235 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH06_RS02240 PF13520 Amino acid permease SH06_RS02245 PF18500 CadC C-terminal domain 1 SH06_RS02245 PF00486 Transcriptional regulatory protein, C terminal SH06_RS02260 PF02683 Cytochrome C biogenesis protein transmembrane region SH06_RS02260 PF11412 Disulphide bond corrector protein DsbC SH06_RS02265 PF03091 CutA1 divalent ion tolerance protein SH06_RS02270 PF03605 Anaerobic c4-dicarboxylate membrane transporter SH06_RS02275 PF10415 Fumarase C C-terminus SH06_RS02275 PF00206 Lyase SH06_RS02280 PF04186 FxsA cytoplasmic membrane protein SH06_RS02285 PF13520 Amino acid permease SH06_RS02290 PF00166 Chaperonin 10 Kd subunit SH06_RS02295 PF00118 TCP-1/cpn60 chaperonin family SH06_RS02300 PF13698 Domain of unknown function (DUF4156) SH06_RS02305 PF15922 YjeJ-like SH06_RS02310 PF04055 Radical SAM superfamily SH06_RS02315 PF01132 Elongation factor P (EF-P) OB domain SH06_RS02315 PF08207 Elongation factor P (EF-P) KOW-like domain SH06_RS02315 PF09285 Elongation factor P, C-terminal SH06_RS02320 PF08085 Entericidin EcnA/B family SH06_RS02325 PF08085 Entericidin EcnA/B family SH06_RS02330 PF00893 Small Multidrug Resistance protein SH06_RS02335 PF08212 Lipocalin-like domain SH06_RS02340 PF00144 Beta-lactamase SH06_RS02345 PF02313 Fumarate reductase subunit D SH06_RS02350 PF02300 Fumarate reductase subunit C SH06_RS02355 PF13183 4Fe-4S dicluster domain SH06_RS02355 PF13085 2Fe-2S iron-sulfur cluster binding domain SH06_RS02360 PF02910 Fumarate reductase flavoprotein C-term SH06_RS02360 PF00890 FAD binding domain SH06_RS02365 PF00152 tRNA synthetases class II (D, K and N) SH06_RS02370 PF13520 Amino acid permease SH06_RS02380 PF10840 Protein of unknown function (DUF2645) SH06_RS02385 PF12794 Mechanosensitive ion channel inner membrane domain 1 SH06_RS02385 PF12795 Mechanosensitive ion channel porin domain SH06_RS02385 PF00924 Mechanosensitive ion channel SH06_RS02390 PF02666 Phosphatidylserine decarboxylase SH06_RS02395 PF03193 RsgA GTPase SH06_RS02400 PF00929 Exonuclease SH06_RS02420 PF08331 Domain of unknown function (DUF1730) SH06_RS02425 PF01256 Carbohydrate kinase SH06_RS02425 PF03853 YjeF-related protein N-terminus SH06_RS02430 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SH06_RS02435 PF01520 N-acetylmuramoyl-L-alanine amidase SH06_RS02440 PF08676 MutL C terminal dimerisation domain SH06_RS02440 PF01119 DNA mismatch repair protein, C-terminal domain SH06_RS02450 PF17209 Hfq protein SH06_RS02455 PF01926 50S ribosome-binding GTPase SH06_RS02455 PF13167 GTP-binding GTPase N-terminal SH06_RS02455 PF16360 GTP-binding GTPase Middle Region SH06_RS02460 PF01145 SPFH domain / Band 7 family SH06_RS02460 PF12221 Bacterial membrane protein N terminal SH06_RS02465 PF01145 SPFH domain / Band 7 family SH06_RS02470 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) SH06_RS02475 PF00709 Adenylosuccinate synthetase SH06_RS02480 PF02082 Transcriptional regulator SH06_RS02485 PF00773 RNB domain SH06_RS02485 PF00575 S1 RNA binding domain SH06_RS02485 PF17876 Cold shock domain SH06_RS02485 PF08461 Ribonuclease R winged-helix domain SH06_RS02485 PF08206 Ribonuclease B OB domain SH06_RS02490 PF00588 SpoU rRNA Methylase family SH06_RS02490 PF08032 RNA 2'-O ribose methyltransferase substrate binding SH06_RS02495 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) SH06_RS02500 PF04012 PspA/IM30 family SH06_RS02505 PF10679 Protein of unknown function (DUF2491) SH06_RS02510 PF03994 Domain of Unknown Function (DUF350) SH06_RS02515 PF06693 Protein of unknown function (DUF1190) SH06_RS02520 PF03738 Glutathionylspermidine synthase preATP-grasp SH06_RS02525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH06_RS02525 PF18158 Adaptive response protein AidB N-terminal domain SH06_RS02525 PF02770 Acyl-CoA dehydrogenase, middle domain SH06_RS02530 PF07338 Protein of unknown function (DUF1471) SH06_RS02535 PF07338 Protein of unknown function (DUF1471) SH06_RS02540 PF00326 Prolyl oligopeptidase family SH06_RS02545 PF00455 DeoR C terminal sensor domain SH06_RS02545 PF08220 DeoR-like helix-turn-helix domain SH06_RS02555 PF03611 PTS system sugar-specific permease component SH06_RS02560 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH06_RS02565 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH06_RS02570 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH06_RS02575 PF01261 Xylose isomerase-like TIM barrel SH06_RS02580 PF00596 Class II Aldolase and Adducin N-terminal domain SH06_RS02585 PF07338 Protein of unknown function (DUF1471) SH06_RS02595 PF01250 Ribosomal protein S6 SH06_RS02600 PF00436 Single-strand binding protein family SH06_RS02605 PF01084 Ribosomal protein S18 SH06_RS02610 PF03948 Ribosomal protein L9, C-terminal domain SH06_RS02610 PF01281 Ribosomal protein L9, N-terminal domain SH06_RS02615 PF10887 Protein of unknown function (DUF2686) SH06_RS02620 PF17938 Tetracyclin repressor-like, C-terminal domain SH06_RS02625 PF04225 Opacity-associated protein A LysM-like domain SH06_RS02625 PF08525 Opacity-associated protein A N-terminal motif SH06_RS02630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH06_RS02630 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SH06_RS02635 PF00324 Amino acid permease SH06_RS02640 PF01814 Hemerythrin HHE cation binding domain SH06_RS02640 PF04405 Domain of Unknown function (DUF542) SH06_RS02645 PF00892 EamA-like transporter family SH06_RS02650 PF05368 NmrA-like family SH06_RS02655 PF01638 HxlR-like helix-turn-helix SH06_RS02660 PF00149 Calcineurin-like phosphoesterase SH06_RS02660 PF02872 5'-nucleotidase, C-terminal domain SH06_RS02665 PF00459 Inositol monophosphatase family SH06_RS02675 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) SH06_RS02680 PF06526 Protein of unknown function (DUF1107) SH06_RS02685 PF01595 Cyclin M transmembrane N-terminal domain SH06_RS02685 PF00571 CBS domain SH06_RS02685 PF03471 Transporter associated domain SH06_RS02690 PF01625 Peptide methionine sulfoxide reductase SH06_RS02700 PF17243 POTRA domain TamA domain 1 SH06_RS02700 PF07244 Surface antigen variable number repeat SH06_RS02700 PF01103 Surface antigen SH06_RS02705 PF04357 TamB, inner membrane protein subunit of TAM complex SH06_RS02710 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like SH06_RS02715 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SH06_RS02720 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SH06_RS02725 PF00719 Inorganic pyrophosphatase SH06_RS02730 PF13407 Periplasmic binding protein domain SH06_RS02735 PF00005 ABC transporter SH06_RS02740 PF02653 Branched-chain amino acid transport system / permease component SH06_RS02745 PF02653 Branched-chain amino acid transport system / permease component SH06_RS02750 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SH06_RS02755 PF08245 Mur ligase middle domain SH06_RS02755 PF01225 Mur ligase family, catalytic domain SH06_RS02755 PF02875 Mur ligase family, glutamate ligase domain SH06_RS02760 PF04751 Protein of unknown function (DUF615) SH06_RS02765 PF01523 Putative modulator of DNA gyrase SH06_RS02770 PF07361 Cytochrome b562 SH06_RS02780 PF13597 Anaerobic ribonucleoside-triphosphate reductase SH06_RS02780 PF03477 ATP cone domain SH06_RS02785 PF00128 Alpha amylase, catalytic domain SH06_RS02785 PF11941 Domain of unknown function (DUF3459) SH06_RS02790 PF00367 phosphotransferase system, EIIB SH06_RS02790 PF02378 Phosphotransferase system, EIIC SH06_RS02795 PF00356 Bacterial regulatory proteins, lacI family SH06_RS02800 PF00690 Cation transporter/ATPase, N-terminus SH06_RS02800 PF00689 Cation transporting ATPase, C-terminus SH06_RS02805 PF01042 Endoribonuclease L-PSP SH06_RS02810 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain SH06_RS02810 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain SH06_RS02815 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH06_RS02815 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH06_RS02820 PF08052 PyrBI operon leader peptide SH06_RS02830 PF01042 Endoribonuclease L-PSP SH06_RS02840 PF00440 Bacterial regulatory proteins, tetR family SH06_RS02845 PF04074 YhcH/YjgK/YiaL SH06_RS02855 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH06_RS02855 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH06_RS02860 PF06877 Regulator of ribonuclease activity B SH06_RS02865 PF00583 Acetyltransferase (GNAT) family SH06_RS02870 PF05987 Bacterial protein of unknown function (DUF898) SH06_RS02875 PF08264 Anticodon-binding domain of tRNA SH06_RS02875 PF00133 tRNA synthetases class I (I, L, M and V) SH06_RS02875 PF10458 Valyl tRNA synthetase tRNA binding arm SH06_RS02880 PF04364 DNA polymerase III chi subunit, HolC SH06_RS02885 PF00883 Cytosol aminopeptidase family, catalytic domain SH06_RS02885 PF02789 Cytosol aminopeptidase family, N-terminal domain SH06_RS02890 PF03739 Lipopolysaccharide export system permease LptF/LptG SH06_RS02895 PF03739 Lipopolysaccharide export system permease LptF/LptG SH06_RS02900 PF05872 Bacterial protein of unknown function (DUF853) SH06_RS02905 PF00356 Bacterial regulatory proteins, lacI family SH06_RS02910 PF02447 GntP family permease SH06_RS02915 PF00106 short chain dehydrogenase SH06_RS02920 PF00107 Zinc-binding dehydrogenase SH06_RS02920 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS02925 PF01202 Shikimate kinase SH06_RS02930 PF00107 Zinc-binding dehydrogenase SH06_RS02930 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS02940 PF13356 Arm DNA-binding domain SH06_RS02940 PF00589 Phage integrase family SH06_RS02950 PF01527 Transposase SH06_RS02955 PF00665 Integrase core domain SH06_RS02955 PF13276 HTH-like domain SH06_RS02960 PF03050 Transposase IS66 family SH06_RS02980 PF13276 HTH-like domain SH06_RS02980 PF13333 Integrase core domain SH06_RS02980 PF00665 Integrase core domain SH06_RS02985 PF01527 Transposase SH06_RS03005 PF04519 Polymer-forming cytoskeletal SH06_RS03015 PF00196 Bacterial regulatory proteins, luxR family SH06_RS03015 PF00563 EAL domain SH06_RS03020 PF13700 Domain of unknown function (DUF4158) SH06_RS03020 PF01526 Tn3 transposase DDE domain SH06_RS03025 PF00239 Resolvase, N terminal domain SH06_RS03025 PF02796 Helix-turn-helix domain of resolvase SH06_RS03040 PF08048 Tap RepA1 leader peptide SH06_RS03045 PF10723 Replication regulatory protein RepB SH06_RS03050 PF01848 Hok/gef family SH06_RS03070 PF13333 Integrase core domain SH06_RS03070 PF00665 Integrase core domain SH06_RS03070 PF13276 HTH-like domain SH06_RS03075 PF01527 Transposase SH06_RS03080 PF12602 Fertility inhibition protein N terminal SH06_RS03080 PF04352 ProQ/FINO family SH06_RS03085 PF05857 TraX protein SH06_RS03090 PF08751 TrwC relaxase SH06_RS03090 PF18272 single-stranded DNA binding TraI N-terminal subdomain SH06_RS03090 PF07057 DNA helicase TraI SH06_RS03090 PF18340 DNA relaxase TraI 2B/2B-like domain SH06_RS03095 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SH06_RS03100 PF01850 PIN domain SH06_RS03105 PF10412 Type IV secretion-system coupling protein DNA-binding domain SH06_RS03105 PF12615 F sex factor protein N terminal SH06_RS03110 PF05818 Enterobacterial TraT complement resistance protein SH06_RS03120 PF07916 TraG-like protein, N-terminal region SH06_RS03125 PF06122 Conjugative relaxosome accessory transposon protein SH06_RS03140 PF13728 F plasmid transfer operon protein SH06_RS03145 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) SH06_RS03160 PF13728 F plasmid transfer operon protein SH06_RS03165 PF11100 Conjugal transfer protein TrbE SH06_RS03170 PF06986 Type-1V conjugative transfer system mating pair stabilisation SH06_RS03175 PF09673 Type-F conjugative transfer system pilin assembly protein SH06_RS03180 PF06834 TraU protein SH06_RS03185 PF12477 Sex factor F TraW protein N terminal SH06_RS03190 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) SH06_RS03195 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer SH06_RS03205 PF09676 Type IV conjugative transfer system lipoprotein (TraV) SH06_RS03215 PF10894 Protein of unknown function (DUF2689) SH06_RS03220 PF07296 TraP protein SH06_RS03225 PF03743 Bacterial conjugation TrbI-like protein SH06_RS03230 PF06586 TraK protein SH06_RS03235 PF05309 TraE protein SH06_RS03240 PF07178 TraL protein SH06_RS03245 PF05513 TraA SH06_RS03250 PF05509 TraY domain SH06_RS03260 PF05261 TraM protein, DNA-binding SH06_RS03265 PF01464 Transglycosylase SLT domain SH06_RS03280 PF01527 Transposase SH06_RS03285 PF00665 Integrase core domain SH06_RS03285 PF13276 HTH-like domain SH06_RS03315 PF01609 Transposase DDE domain SH06_RS03315 PF13006 Insertion element 4 transposase N-terminal SH06_RS03320 PF07690 Major Facilitator Superfamily SH06_RS03325 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH06_RS03325 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH06_RS03330 PF16747 Surface-adhesin protein E SH06_RS03335 PF11700 Vacuole effluxer Atg22 like SH06_RS03340 PF01527 Transposase SH06_RS03345 PF00665 Integrase core domain SH06_RS03345 PF13936 Helix-turn-helix domain SH06_RS03350 PF01527 Transposase SH06_RS03365 PF00005 ABC transporter SH06_RS03370 PF01032 FecCD transport family SH06_RS03375 PF01032 FecCD transport family SH06_RS03380 PF01497 Periplasmic binding protein SH06_RS03385 PF00593 TonB dependent receptor SH06_RS03385 PF07660 Secretin and TonB N terminus short domain SH06_RS03385 PF07715 TonB-dependent Receptor Plug Domain SH06_RS03390 PF04773 FecR protein SH06_RS03390 PF16220 Domain of unknown function (DUF4880) SH06_RS03395 PF08281 Sigma-70, region 4 SH06_RS03395 PF04542 Sigma-70 region 2 SH06_RS03410 PF03400 IS1 transposase SH06_RS03415 PF04198 Putative sugar-binding domain SH06_RS03425 PF02447 GntP family permease SH06_RS03430 PF00920 Dehydratase family SH06_RS03435 PF00701 Dihydrodipicolinate synthetase family SH06_RS03440 PF01614 Bacterial transcriptional regulator SH06_RS03445 PF00455 DeoR C terminal sensor domain SH06_RS03445 PF08220 DeoR-like helix-turn-helix domain SH06_RS03450 PF00834 Ribulose-phosphate 3 epimerase family SH06_RS03455 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH06_RS03460 PF03437 BtpA family SH06_RS03465 PF03611 PTS system sugar-specific permease component SH06_RS03470 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH06_RS03475 PF05343 M42 glutamyl aminopeptidase SH06_RS03480 PF13847 Methyltransferase domain SH06_RS03485 PF00583 Acetyltransferase (GNAT) family SH06_RS03490 PF09857 Putative toxin of bacterial toxin-antitoxin pair SH06_RS03505 PF13091 PLD-like domain SH06_RS03505 PF13087 AAA domain SH06_RS03510 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase SH06_RS03520 PF06178 Oligogalacturonate-specific porin protein (KdgM) SH06_RS03535 PF00589 Phage integrase family SH06_RS03540 PF00589 Phage integrase family SH06_RS03550 PF00419 Fimbrial protein SH06_RS03555 PF00419 Fimbrial protein SH06_RS03560 PF02753 Pili assembly chaperone PapD, C-terminal domain SH06_RS03560 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH06_RS03565 PF13953 PapC C-terminal domain SH06_RS03565 PF13954 PapC N-terminal domain SH06_RS03565 PF00577 Outer membrane usher protein SH06_RS03570 PF00419 Fimbrial protein SH06_RS03580 PF00419 Fimbrial protein SH06_RS03580 PF09160 FimH, mannose binding SH06_RS03585 PF02447 GntP family permease SH06_RS03595 PF03786 D-mannonate dehydratase (UxuA) SH06_RS03600 PF01232 Mannitol dehydrogenase Rossmann domain SH06_RS03600 PF08125 Mannitol dehydrogenase C-terminal domain SH06_RS03610 PF07729 FCD domain SH06_RS03610 PF00392 Bacterial regulatory proteins, gntR family SH06_RS03615 PF10887 Protein of unknown function (DUF2686) SH06_RS03635 PF04965 Gene 25-like lysozyme SH06_RS03640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS03640 PF03466 LysR substrate binding domain SH06_RS03645 PF01979 Amidohydrolase family SH06_RS03650 PF07670 Nucleoside recognition SH06_RS03655 PF07670 Nucleoside recognition SH06_RS03660 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family SH06_RS03665 PF06779 Uncharacterised MFS-type transporter YbfB SH06_RS03670 PF06977 SdiA-regulated SH06_RS03675 PF11823 Protein of unknown function (DUF3343) SH06_RS03680 PF01869 BadF/BadG/BcrA/BcrD ATPase family SH06_RS03685 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SH06_RS03690 PF04286 Protein of unknown function (DUF445) SH06_RS03695 PF07690 Major Facilitator Superfamily SH06_RS03705 PF00155 Aminotransferase class I and II SH06_RS03705 PF00392 Bacterial regulatory proteins, gntR family SH06_RS03710 PF06568 Domain of unknown function (DUF1127) SH06_RS03725 PF10117 McrBC 5-methylcytosine restriction system component SH06_RS03730 PF12102 Domain of unknown function (DUF3578) SH06_RS03730 PF07728 AAA domain (dynein-related subfamily) SH06_RS03735 PF08845 Toxin SymE, type I toxin-antitoxin system SH06_RS03740 PF01420 Type I restriction modification DNA specificity domain SH06_RS03745 PF02384 N-6 DNA Methylase SH06_RS03750 PF04851 Type III restriction enzyme, res subunit SH06_RS03750 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SH06_RS03750 PF00271 Helicase conserved C-terminal domain SH06_RS03750 PF08463 EcoEI R protein C-terminal SH06_RS03755 PF07690 Major Facilitator Superfamily SH06_RS03760 PF02909 Tetracyclin repressor-like, C-terminal domain SH06_RS03760 PF00440 Bacterial regulatory proteins, tetR family SH06_RS03765 PF04471 Restriction endonuclease SH06_RS03765 PF14338 Mrr N-terminal domain SH06_RS03770 PF07683 Cobalamin synthesis protein cobW C-terminal domain SH06_RS03770 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH06_RS03775 PF04328 Selenoprotein, putative SH06_RS03780 PF02554 Carbon starvation protein CstA SH06_RS03780 PF13722 5TM C-terminal transporter carbon starvation CstA SH06_RS03790 PF02203 Tar ligand binding domain homologue SH06_RS03790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH06_RS03790 PF00672 HAMP domain SH06_RS03795 PF07690 Major Facilitator Superfamily SH06_RS03800 PF00392 Bacterial regulatory proteins, gntR family SH06_RS03800 PF07729 FCD domain SH06_RS03805 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS03805 PF00107 Zinc-binding dehydrogenase SH06_RS03810 PF00884 Sulfatase SH06_RS03815 PF10696 Protein of unknown function (DUF2501) SH06_RS03820 PF01695 IstB-like ATP binding protein SH06_RS03825 PF17948 DnaT DNA-binding domain SH06_RS03830 PF12821 Threonine/Serine exporter, ThrE SH06_RS03835 PF06738 Putative threonine/serine exporter SH06_RS03840 PF00196 Bacterial regulatory proteins, luxR family SH06_RS03845 PF00196 Bacterial regulatory proteins, luxR family SH06_RS03850 PF11575 FhuF 2Fe-2S C-terminal domain SH06_RS03850 PF06276 Ferric iron reductase FhuF-like transporter SH06_RS03855 PF07256 Protein of unknown function (DUF1435) SH06_RS03875 PF08468 Methyltransferase small domain N-terminal SH06_RS03875 PF05175 Methyltransferase small domain SH06_RS03880 PF03603 DNA polymerase III psi subunit SH06_RS03885 PF00583 Acetyltransferase (GNAT) family SH06_RS03890 PF13419 Haloacid dehalogenase-like hydrolase SH06_RS03895 PF16658 Class II release factor RF3, C-terminal domain SH06_RS03895 PF03144 Elongation factor Tu domain 2 SH06_RS03895 PF00009 Elongation factor Tu GTP binding domain SH06_RS03900 PF04972 BON domain SH06_RS03905 PF07043 Protein of unknown function (DUF1328) SH06_RS03910 PF01734 Patatin-like phospholipase SH06_RS03915 PF01026 TatD related DNase SH06_RS03920 PF04055 Radical SAM superfamily SH06_RS03925 PF11230 Protein of unknown function (DUF3029) SH06_RS03935 PF01791 DeoC/LacD family aldolase SH06_RS03940 PF00591 Glycosyl transferase family, a/b domain SH06_RS03940 PF02885 Glycosyl transferase family, helical bundle domain SH06_RS03940 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SH06_RS03945 PF01676 Metalloenzyme superfamily SH06_RS03950 PF01048 Phosphorylase superfamily SH06_RS03955 PF07804 HipA-like C-terminal domain SH06_RS03960 PF10437 Bacterial lipoate protein ligase C-terminus SH06_RS03960 PF03099 Biotin/lipoate A/B protein ligase family SH06_RS03965 PF10144 Bacterial virulence factor haemolysin SH06_RS03970 PF18429 Domain of unknown function (DUF5609) SH06_RS03975 PF18073 Rubredoxin metal binding domain SH06_RS03980 PF01381 Helix-turn-helix SH06_RS03980 PF13521 AAA domain SH06_RS03990 PF12848 ABC transporter SH06_RS03990 PF00005 ABC transporter SH06_RS03995 PF01464 Transglycosylase SLT domain SH06_RS03995 PF14718 Soluble lytic murein transglycosylase L domain SH06_RS04000 PF01371 Trp repressor protein SH06_RS04005 PF01931 Protein of unknown function DUF84 SH06_RS04010 PF00300 Histidine phosphatase superfamily (branch 1) SH06_RS04015 PF06445 GyrI-like small molecule binding domain SH06_RS04015 PF12833 Helix-turn-helix domain SH06_RS04020 PF05981 CreA protein SH06_RS04025 PF00486 Transcriptional regulatory protein, C terminal SH06_RS04025 PF00072 Response regulator receiver domain SH06_RS04030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS04030 PF00672 HAMP domain SH06_RS04030 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS04035 PF06123 Inner membrane protein CreD SH06_RS04040 PF00486 Transcriptional regulatory protein, C terminal SH06_RS04040 PF00072 Response regulator receiver domain SH06_RS04050 PF00588 SpoU rRNA Methylase family SH06_RS04055 PF08254 Threonine leader peptide SH06_RS04060 PF00696 Amino acid kinase family SH06_RS04060 PF00742 Homoserine dehydrogenase SH06_RS04060 PF03447 Homoserine dehydrogenase, NAD binding domain SH06_RS04060 PF13840 ACT domain SH06_RS04060 PF01842 ACT domain SH06_RS04065 PF00288 GHMP kinases N terminal domain SH06_RS04065 PF08544 GHMP kinases C terminal SH06_RS04070 PF00291 Pyridoxal-phosphate dependent enzyme SH06_RS04070 PF14821 Threonine synthase N terminus SH06_RS04080 PF10697 Protein of unknown function (DUF2502) SH06_RS04085 PF03883 Peroxide stress protein YaaA SH06_RS04090 PF01235 Sodium:alanine symporter family SH06_RS04095 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH06_RS04100 PF00994 Probable molybdopterin binding domain SH06_RS04105 PF01184 GPR1/FUN34/yaaH family SH06_RS04110 PF03981 Ubiquinol-cytochrome C chaperone SH06_RS04110 PF13099 Domain of unknown function (DUF3944) SH06_RS04115 PF10807 Protein of unknown function (DUF2541) SH06_RS04120 PF00012 Hsp70 protein SH06_RS04125 PF00684 DnaJ central domain SH06_RS04125 PF01556 DnaJ C terminal domain SH06_RS04125 PF00226 DnaJ domain SH06_RS04130 PF01609 Transposase DDE domain SH06_RS04135 PF01848 Hok/gef family SH06_RS04140 PF06965 Na+/H+ antiporter 1 SH06_RS04145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS04145 PF03466 LysR substrate binding domain SH06_RS04150 PF03400 IS1 transposase SH06_RS04155 PF03811 InsA N-terminal domain SH06_RS04155 PF12759 InsA C-terminal domain SH06_RS04160 PF01649 Ribosomal protein S20 SH06_RS04165 PF10837 Protein of unknown function (DUF2575) SH06_RS04170 PF01687 Riboflavin kinase SH06_RS04170 PF06574 FAD synthetase SH06_RS04175 PF08264 Anticodon-binding domain of tRNA SH06_RS04175 PF00133 tRNA synthetases class I (I, L, M and V) SH06_RS04175 PF06827 Zinc finger found in FPG and IleRS SH06_RS04180 PF01252 Signal peptidase (SPase) II SH06_RS04185 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH06_RS04190 PF02401 LytB protein SH06_RS04195 PF01156 Inosine-uridine preferring nucleoside hydrolase SH06_RS04200 PF05173 Dihydrodipicolinate reductase, C-terminus SH06_RS04200 PF01113 Dihydrodipicolinate reductase, N-terminus SH06_RS04215 PF00117 Glutamine amidotransferase class-I SH06_RS04215 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SH06_RS04220 PF02142 MGS-like domain SH06_RS04220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH06_RS04220 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SH06_RS04230 PF07180 CaiF/GrlA transcriptional regulator SH06_RS04235 PF00132 Bacterial transferase hexapeptide (six repeats) SH06_RS04240 PF00378 Enoyl-CoA hydratase/isomerase SH06_RS04245 PF00501 AMP-binding enzyme SH06_RS04245 PF13193 AMP-binding enzyme C-terminal domain SH06_RS04250 PF02515 CoA-transferase family III SH06_RS04255 PF02770 Acyl-CoA dehydrogenase, middle domain SH06_RS04255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH06_RS04255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH06_RS04260 PF02028 BCCT, betaine/carnitine/choline family transporter SH06_RS04265 PF01012 Electron transfer flavoprotein domain SH06_RS04270 PF01012 Electron transfer flavoprotein domain SH06_RS04270 PF00766 Electron transfer flavoprotein FAD-binding domain SH06_RS04275 PF01494 FAD binding domain SH06_RS04285 PF00083 Sugar (and other) transporter SH06_RS04290 PF02525 Flavodoxin-like fold SH06_RS04295 PF00999 Sodium/hydrogen exchanger family SH06_RS04295 PF02254 TrkA-N domain SH06_RS04300 PF00186 Dihydrofolate reductase SH06_RS04305 PF00149 Calcineurin-like phosphoesterase SH06_RS04310 PF04379 ApaG domain SH06_RS04315 PF00398 Ribosomal RNA adenine dimethylase SH06_RS04320 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SH06_RS04325 PF00639 PPIC-type PPIASE domain SH06_RS04325 PF09312 SurA N-terminal domain SH06_RS04330 PF04453 LPS transport system D SH06_RS04330 PF03968 OstA-like protein SH06_RS04335 PF05099 Tellurite resistance protein TerB SH06_RS04335 PF00226 DnaJ domain SH06_RS04345 PF00849 RNA pseudouridylate synthase SH06_RS04350 PF12137 RNA polymerase recycling family C-terminal SH06_RS04350 PF00176 SNF2 family N-terminal domain SH06_RS04350 PF00271 Helicase conserved C-terminal domain SH06_RS04350 PF18339 RapA N-terminal Tudor like domain 1 SH06_RS04350 PF18337 RapA N-terminal Tudor like domain SH06_RS04355 PF03104 DNA polymerase family B, exonuclease domain SH06_RS04355 PF00136 DNA polymerase family B SH06_RS04360 PF00596 Class II Aldolase and Adducin N-terminal domain SH06_RS04365 PF02610 L-arabinose isomerase SH06_RS04365 PF11762 L-arabinose isomerase C-terminal domain SH06_RS04370 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH06_RS04375 PF02311 AraC-like ligand binding domain SH06_RS04375 PF12833 Helix-turn-helix domain SH06_RS04380 PF09335 SNARE associated Golgi protein SH06_RS04385 PF00005 ABC transporter SH06_RS04390 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS04400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH06_RS04400 PF12793 Sugar transport-related sRNA regulator N-term SH06_RS04410 PF07690 Major Facilitator Superfamily SH06_RS04415 PF00694 Aconitase C-terminal domain SH06_RS04420 PF00330 Aconitase family (aconitate hydratase) SH06_RS04425 PF00180 Isocitrate/isopropylmalate dehydrogenase SH06_RS04430 PF08502 LeuA allosteric (dimerisation) domain SH06_RS04430 PF00682 HMGL-like SH06_RS04435 PF08054 Leucine operon leader peptide SH06_RS04440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS04440 PF03466 LysR substrate binding domain SH06_RS04445 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH06_RS04445 PF00205 Thiamine pyrophosphate enzyme, central domain SH06_RS04445 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH06_RS04450 PF10369 Small subunit of acetolactate synthase SH06_RS04460 PF00356 Bacterial regulatory proteins, lacI family SH06_RS04460 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH06_RS04465 PF02381 MraZ protein, putative antitoxin-like SH06_RS04470 PF01795 MraW methylase family SH06_RS04475 PF04999 Cell division protein FtsL SH06_RS04480 PF03717 Penicillin-binding Protein dimerisation domain SH06_RS04480 PF00905 Penicillin binding protein transpeptidase domain SH06_RS04485 PF08245 Mur ligase middle domain SH06_RS04485 PF02875 Mur ligase family, glutamate ligase domain SH06_RS04485 PF01225 Mur ligase family, catalytic domain SH06_RS04490 PF01225 Mur ligase family, catalytic domain SH06_RS04490 PF02875 Mur ligase family, glutamate ligase domain SH06_RS04490 PF08245 Mur ligase middle domain SH06_RS04495 PF00953 Glycosyl transferase family 4 SH06_RS04495 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SH06_RS04500 PF08245 Mur ligase middle domain SH06_RS04500 PF02875 Mur ligase family, glutamate ligase domain SH06_RS04505 PF01098 Cell cycle protein SH06_RS04510 PF03033 Glycosyltransferase family 28 N-terminal domain SH06_RS04510 PF04101 Glycosyltransferase family 28 C-terminal domain SH06_RS04515 PF01225 Mur ligase family, catalytic domain SH06_RS04515 PF08245 Mur ligase middle domain SH06_RS04515 PF02875 Mur ligase family, glutamate ligase domain SH06_RS04520 PF07478 D-ala D-ala ligase C-terminus SH06_RS04520 PF01820 D-ala D-ala ligase N-terminus SH06_RS04525 PF03799 Cell division protein FtsQ SH06_RS04525 PF08478 POTRA domain, FtsQ-type SH06_RS04530 PF02491 SHS2 domain inserted in FTSA SH06_RS04535 PF12327 FtsZ family, C-terminal domain SH06_RS04535 PF00091 Tubulin/FtsZ family, GTPase domain SH06_RS04540 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SH06_RS04545 PF06558 Secretion monitor precursor protein (SecM) SH06_RS04550 PF02810 SEC-C motif SH06_RS04550 PF01043 SecA preprotein cross-linking domain SH06_RS04550 PF07516 SecA Wing and Scaffold domain SH06_RS04550 PF07517 SecA DEAD-like domain SH06_RS04555 PF00293 NUDIX domain SH06_RS04565 PF03884 DNA gyrase inhibitor YacG SH06_RS04570 PF07072 Cell division protein SH06_RS04575 PF01121 Dephospho-CoA kinase SH06_RS04580 PF00478 IMP dehydrogenase / GMP reductase domain SH06_RS04585 PF00482 Type II secretion system (T2SS), protein F SH06_RS04590 PF00437 Type II/IV secretion system protein SH06_RS04590 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SH06_RS04595 PF07963 Prokaryotic N-terminal methylation motif SH06_RS04605 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SH06_RS04605 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SH06_RS04610 PF01510 N-acetylmuramoyl-L-alanine amidase SH06_RS04615 PF17113 Regulatory signalling modulator protein AmpE SH06_RS04620 PF00324 Amino acid permease SH06_RS04625 PF07729 FCD domain SH06_RS04625 PF00392 Bacterial regulatory proteins, gntR family SH06_RS04630 PF17831 Pyruvate dehydrogenase E1 component middle domain SH06_RS04630 PF00456 Transketolase, thiamine diphosphate binding domain SH06_RS04635 PF00364 Biotin-requiring enzyme SH06_RS04635 PF02817 e3 binding domain SH06_RS04635 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH06_RS04640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH06_RS04640 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH06_RS04645 PF11737 Protein of unknown function (DUF3300) SH06_RS04650 PF00330 Aconitase family (aconitate hydratase) SH06_RS04650 PF06434 Aconitate hydratase 2 N-terminus SH06_RS04650 PF11791 Aconitate B N-terminal domain SH06_RS04655 PF06062 Uncharacterised protein family (UPF0231) SH06_RS04660 PF02675 S-adenosylmethionine decarboxylase SH06_RS04665 PF17284 Spermidine synthase tetramerisation domain SH06_RS04670 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) SH06_RS04675 PF00394 Multicopper oxidase SH06_RS04675 PF07731 Multicopper oxidase SH06_RS04675 PF07732 Multicopper oxidase SH06_RS04680 PF01011 PQQ enzyme repeat SH06_RS04685 PF00156 Phosphoribosyl transferase domain SH06_RS04690 PF00484 Carbonic anhydrase SH06_RS04695 PF00005 ABC transporter SH06_RS04700 PF01061 ABC-2 type transporter SH06_RS04705 PF03610 PTS system fructose IIA component SH06_RS04710 PF01522 Polysaccharide deacetylase SH06_RS04715 PF02261 Aspartate decarboxylase SH06_RS04720 PF04754 Putative transposase, YhgA-like SH06_RS04725 PF02569 Pantoate-beta-alanine ligase SH06_RS04730 PF02548 Ketopantoate hydroxymethyltransferase SH06_RS04735 PF00419 Fimbrial protein SH06_RS04740 PF00419 Fimbrial protein SH06_RS04745 PF00419 Fimbrial protein SH06_RS04750 PF00419 Fimbrial protein SH06_RS04755 PF13953 PapC C-terminal domain SH06_RS04755 PF00577 Outer membrane usher protein SH06_RS04755 PF13954 PapC N-terminal domain SH06_RS04760 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH06_RS04760 PF02753 Pili assembly chaperone PapD, C-terminal domain SH06_RS04765 PF00419 Fimbrial protein SH06_RS04770 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SH06_RS04775 PF01743 Poly A polymerase head domain SH06_RS04775 PF12626 Polymerase A arginine-rich C-terminus SH06_RS04775 PF12627 Probable RNA and SrmB- binding site of polymerase A SH06_RS04780 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH06_RS04785 PF01258 Prokaryotic dksA/traR C4-type zinc finger SH06_RS04790 PF17746 SfsA N-terminal OB domain SH06_RS04790 PF03749 Sugar fermentation stimulation protein RE domain SH06_RS04795 PF02834 LigT like Phosphoesterase SH06_RS04800 PF08482 ATP-dependent helicase C-terminal SH06_RS04800 PF00270 DEAD/DEAH box helicase SH06_RS04800 PF04408 Helicase associated domain (HA2) SH06_RS04800 PF00271 Helicase conserved C-terminal domain SH06_RS04810 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal SH06_RS04810 PF00912 Transglycosylase SH06_RS04810 PF00905 Penicillin binding protein transpeptidase domain SH06_RS04810 PF14814 Bifunctional transglycosylase second domain SH06_RS04815 PF00593 TonB dependent receptor SH06_RS04815 PF07715 TonB-dependent Receptor Plug Domain SH06_RS04820 PF00005 ABC transporter SH06_RS04825 PF01497 Periplasmic binding protein SH06_RS04830 PF01032 FecCD transport family SH06_RS04835 PF00202 Aminotransferase class-III SH06_RS04840 PF00654 Voltage gated chloride channel SH06_RS04845 PF01521 Iron-sulphur cluster biosynthesis SH06_RS04850 PF03458 UPF0126 domain SH06_RS04855 PF01497 Periplasmic binding protein SH06_RS04860 PF01048 Phosphorylase superfamily SH06_RS04865 PF13286 Phosphohydrolase-associated domain SH06_RS04865 PF01966 HD domain SH06_RS04870 PF00595 PDZ domain SH06_RS04875 PF13556 PucR C-terminal helix-turn-helix domain SH06_RS04875 PF05651 Putative sugar diacid recognition SH06_RS04875 PF17853 GGDEF-like domain SH06_RS04880 PF11944 Protein of unknown function (DUF3461) SH06_RS04885 PF00149 Calcineurin-like phosphoesterase SH06_RS04890 PF00132 Bacterial transferase hexapeptide (six repeats) SH06_RS04890 PF14602 Hexapeptide repeat of succinyl-transferase SH06_RS04890 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal SH06_RS04895 PF01842 ACT domain SH06_RS04895 PF01909 Nucleotidyltransferase domain SH06_RS04895 PF08335 GlnD PII-uridylyltransferase SH06_RS04895 PF01966 HD domain SH06_RS04900 PF00557 Metallopeptidase family M24 SH06_RS04905 PF00318 Ribosomal protein S2 SH06_RS04910 PF00889 Elongation factor TS SH06_RS04915 PF00696 Amino acid kinase family SH06_RS04920 PF01765 Ribosome recycling factor SH06_RS04925 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SH06_RS04925 PF13288 DXP reductoisomerase C-terminal domain SH06_RS04925 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SH06_RS04930 PF01255 Putative undecaprenyl diphosphate synthase SH06_RS04940 PF02163 Peptidase family M50 SH06_RS04940 PF17820 PDZ domain SH06_RS04945 PF07244 Surface antigen variable number repeat SH06_RS04945 PF01103 Surface antigen SH06_RS04950 PF03938 Outer membrane protein (OmpH-like) SH06_RS04955 PF00132 Bacterial transferase hexapeptide (six repeats) SH06_RS04955 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SH06_RS04960 PF07977 FabA-like domain SH06_RS04965 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SH06_RS04965 PF00132 Bacterial transferase hexapeptide (six repeats) SH06_RS04970 PF02684 Lipid-A-disaccharide synthetase SH06_RS04975 PF01351 Ribonuclease HII SH06_RS04980 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SH06_RS04980 PF07733 Bacterial DNA polymerase III alpha NTPase domain SH06_RS04980 PF02811 PHP domain SH06_RS04980 PF14579 Helix-hairpin-helix motif SH06_RS04980 PF01336 OB-fold nucleic acid binding domain SH06_RS04985 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SH06_RS04990 PF01276 Orn/Lys/Arg decarboxylase, major domain SH06_RS04990 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH06_RS04990 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH06_RS04995 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH06_RS05000 PF09179 TilS substrate binding domain SH06_RS05000 PF11734 TilS substrate C-terminal domain SH06_RS05000 PF01171 PP-loop family SH06_RS05005 PF07073 Modulator of Rho-dependent transcription termination (ROF) SH06_RS05010 PF06786 Uncharacterised protein family (UPF0253) SH06_RS05015 PF07152 YaeQ protein SH06_RS05020 PF00472 RF-1 domain SH06_RS05025 PF04170 NlpE N-terminal domain SH06_RS05025 PF17185 NlpE C-terminal OB domain SH06_RS05030 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH06_RS05035 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH06_RS05035 PF04073 Aminoacyl-tRNA editing domain SH06_RS05035 PF03129 Anticodon binding domain SH06_RS05040 PF01980 tRNA-methyltransferase O SH06_RS05040 PF18389 TrmO C-terminal domain SH06_RS05045 PF16358 RcsF lipoprotein SH06_RS05050 PF03180 NLPA lipoprotein SH06_RS05055 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS05060 PF00005 ABC transporter SH06_RS05060 PF09383 NIL domain SH06_RS05100 PF00248 Aldo/keto reductase family SH06_RS05105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS05105 PF03466 LysR substrate binding domain SH06_RS05110 PF03372 Endonuclease/Exonuclease/phosphatase family SH06_RS05115 PF08241 Methyltransferase domain SH06_RS05120 PF01464 Transglycosylase SLT domain SH06_RS05120 PF01476 LysM domain SH06_RS05125 PF00753 Metallo-beta-lactamase superfamily SH06_RS05125 PF16123 Hydroxyacylglutathione hydrolase C-terminus SH06_RS05130 PF08241 Methyltransferase domain SH06_RS05135 PF00075 RNase H SH06_RS05140 PF00929 Exonuclease SH06_RS05165 PF13808 DDE_Tnp_1-associated SH06_RS05165 PF01609 Transposase DDE domain SH06_RS05170 PF00795 Carbon-nitrogen hydrolase SH06_RS05180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH06_RS05180 PF02770 Acyl-CoA dehydrogenase, middle domain SH06_RS05180 PF09317 Domain of unknown function (DUF1974) SH06_RS05180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH06_RS05185 PF13580 SIS domain SH06_RS05190 PF13230 Glutamine amidotransferases class-II SH06_RS05195 PF03734 L,D-transpeptidase catalytic domain SH06_RS05200 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ SH06_RS05205 PF04221 RelB antitoxin SH06_RS05210 PF00877 NlpC/P60 family SH06_RS05220 PF00771 FHIPEP family SH06_RS05225 PF13677 Membrane MotB of proton-channel complex MotA/MotB SH06_RS05225 PF00691 OmpA family SH06_RS05230 PF11799 impB/mucB/samB family C-terminal domain SH06_RS05230 PF00817 impB/mucB/samB family SH06_RS05230 PF11798 IMS family HHH motif SH06_RS05240 PF13957 Toxin YafO, type II toxin-antitoxin system SH06_RS05245 PF13673 Acetyltransferase (GNAT) domain SH06_RS05255 PF00472 RF-1 domain SH06_RS05260 PF07687 Peptidase dimerisation domain SH06_RS05260 PF01546 Peptidase family M20/M25/M40 SH06_RS05265 PF00156 Phosphoribosyl transferase domain SH06_RS05270 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) SH06_RS05275 PF07417 Sigma factor-binding transcriptional regulator Crl SH06_RS05280 PF00267 Gram-negative porin SH06_RS05285 PF00696 Amino acid kinase family SH06_RS05285 PF01472 PUA domain SH06_RS05290 PF00171 Aldehyde dehydrogenase family SH06_RS05300 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH06_RS05305 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH06_RS05310 PF04002 RadC-like JAB domain SH06_RS05315 PF03230 Antirestriction protein SH06_RS05320 PF06006 Bacterial protein of unknown function (DUF905) SH06_RS05340 PF06067 Domain of unknown function (DUF932) SH06_RS05345 PF01926 50S ribosome-binding GTPase SH06_RS05350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS05350 PF03466 LysR substrate binding domain SH06_RS05355 PF01527 Transposase SH06_RS05360 PF00665 Integrase core domain SH06_RS05360 PF13936 Helix-turn-helix domain SH06_RS05380 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SH06_RS05385 PF01609 Transposase DDE domain SH06_RS05385 PF05598 Transposase domain (DUF772) SH06_RS05390 PF00324 Amino acid permease SH06_RS05395 PF02574 Homocysteine S-methyltransferase SH06_RS05400 PF08402 TOBE domain SH06_RS05400 PF00005 ABC transporter SH06_RS05405 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS05410 PF03400 IS1 transposase SH06_RS05415 PF03811 InsA N-terminal domain SH06_RS05415 PF12759 InsA C-terminal domain SH06_RS05420 PF01527 Transposase SH06_RS05425 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH06_RS05430 PF00665 Integrase core domain SH06_RS05435 PF00701 Dihydrodipicolinate synthetase family SH06_RS05440 PF00920 Dehydratase family SH06_RS05450 PF04616 Glycosyl hydrolases family 43 SH06_RS05450 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain SH06_RS05455 PF01614 Bacterial transcriptional regulator SH06_RS05455 PF09339 IclR helix-turn-helix domain SH06_RS05460 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH06_RS05460 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH06_RS05465 PF03400 IS1 transposase SH06_RS05480 PF07638 ECF sigma factor SH06_RS05500 PF00589 Phage integrase family SH06_RS05500 PF13356 Arm DNA-binding domain SH06_RS05510 PF03466 LysR substrate binding domain SH06_RS05515 PF02625 XdhC and CoxI family SH06_RS05515 PF13478 XdhC Rossmann domain SH06_RS05520 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH06_RS05520 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH06_RS05525 PF00941 FAD binding domain in molybdopterin dehydrogenase SH06_RS05525 PF03450 CO dehydrogenase flavoprotein C-terminal domain SH06_RS05530 PF00111 2Fe-2S iron-sulfur cluster binding domain SH06_RS05530 PF01799 [2Fe-2S] binding domain SH06_RS05535 PF07274 Protein of unknown function (DUF1440) SH06_RS05540 PF03692 Putative zinc- or iron-chelating domain SH06_RS05555 PF15976 CS1-pili formation C-terminal SH06_RS05555 PF16967 E-set like domain SH06_RS05560 PF18649 EcpB C-terminal domain SH06_RS05565 PF16449 Fimbrillin MatB SH06_RS05570 PF00196 Bacterial regulatory proteins, luxR family SH06_RS05580 PF00444 Ribosomal protein L36 SH06_RS05585 PF01197 Ribosomal protein L31 SH06_RS05595 PF11924 Inverse autotransporter, beta-domain SH06_RS05600 PF01527 Transposase SH06_RS05605 PF00665 Integrase core domain SH06_RS05605 PF13333 Integrase core domain SH06_RS05605 PF13276 HTH-like domain SH06_RS05610 PF12833 Helix-turn-helix domain SH06_RS05615 PF04224 Protein of unknown function, DUF417 SH06_RS05620 PF07338 Protein of unknown function (DUF1471) SH06_RS05625 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH06_RS05625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH06_RS05630 PF12833 Helix-turn-helix domain SH06_RS05630 PF12852 Cupin SH06_RS05635 PF02754 Cysteine-rich domain SH06_RS05640 PF13183 4Fe-4S dicluster domain SH06_RS05640 PF02589 LUD domain SH06_RS05640 PF11870 Domain of unknown function (DUF3390) SH06_RS05645 PF02589 LUD domain SH06_RS05660 PF00732 GMC oxidoreductase SH06_RS05660 PF05199 GMC oxidoreductase SH06_RS05665 PF00171 Aldehyde dehydrogenase family SH06_RS05670 PF13977 BetI-type transcriptional repressor, C-terminal SH06_RS05670 PF00440 Bacterial regulatory proteins, tetR family SH06_RS05675 PF02028 BCCT, betaine/carnitine/choline family transporter SH06_RS05685 PF00196 Bacterial regulatory proteins, luxR family SH06_RS05685 PF00563 EAL domain SH06_RS05690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS05690 PF03466 LysR substrate binding domain SH06_RS05695 PF06496 Protein of unknown function (DUF1097) SH06_RS05700 PF12796 Ankyrin repeats (3 copies) SH06_RS05705 PF11392 Protein of unknown function (DUF2877) SH06_RS05710 PF02629 CoA binding domain SH06_RS05710 PF00549 CoA-ligase SH06_RS05715 PF06545 Protein of unknown function (DUF1116) SH06_RS05725 PF00696 Amino acid kinase family SH06_RS05730 PF07969 Amidohydrolase family SH06_RS05735 PF00107 Zinc-binding dehydrogenase SH06_RS05735 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS05750 PF01810 LysE type translocator SH06_RS05755 PF07338 Protein of unknown function (DUF1471) SH06_RS05760 PF02954 Bacterial regulatory protein, Fis family SH06_RS05760 PF06506 Propionate catabolism activator SH06_RS05760 PF00158 Sigma-54 interaction domain SH06_RS05770 PF00285 Citrate synthase, C-terminal domain SH06_RS05780 PF16177 Acetyl-coenzyme A synthetase N-terminus SH06_RS05780 PF00501 AMP-binding enzyme SH06_RS05780 PF13193 AMP-binding enzyme C-terminal domain SH06_RS05785 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin SH06_RS05790 PF07969 Amidohydrolase family SH06_RS05795 PF03466 LysR substrate binding domain SH06_RS05795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS05800 PF00484 Carbonic anhydrase SH06_RS05805 PF02560 Cyanate lyase C-terminal domain SH06_RS05810 PF07690 Major Facilitator Superfamily SH06_RS05815 PF00132 Bacterial transferase hexapeptide (six repeats) SH06_RS05815 PF12464 Maltose acetyltransferase SH06_RS05820 PF01306 LacY proton/sugar symporter SH06_RS05825 PF00703 Glycosyl hydrolases family 2 SH06_RS05825 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH06_RS05825 PF02929 Beta galactosidase small chain SH06_RS05825 PF16353 Domain of unknown function(DUF4981) SH06_RS05825 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH06_RS05830 PF00356 Bacterial regulatory proteins, lacI family SH06_RS05835 PF01614 Bacterial transcriptional regulator SH06_RS05835 PF09339 IclR helix-turn-helix domain SH06_RS05840 PF01494 FAD binding domain SH06_RS05845 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SH06_RS05850 PF12697 Alpha/beta hydrolase family SH06_RS05855 PF01557 Fumarylacetoacetate (FAA) hydrolase family SH06_RS05860 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation SH06_RS05860 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH06_RS05865 PF07836 DmpG-like communication domain SH06_RS05865 PF00682 HMGL-like SH06_RS05870 PF07690 Major Facilitator Superfamily SH06_RS05875 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) SH06_RS05880 PF00756 Putative esterase SH06_RS05885 PF00107 Zinc-binding dehydrogenase SH06_RS05885 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS05890 PF02583 Metal-sensitive transcriptional repressor SH06_RS05900 PF00132 Bacterial transferase hexapeptide (six repeats) SH06_RS05905 PF01527 Transposase SH06_RS05910 PF13276 HTH-like domain SH06_RS05910 PF00665 Integrase core domain SH06_RS05915 PF00535 Glycosyl transferase family 2 SH06_RS05920 PF02585 GlcNAc-PI de-N-acetylase SH06_RS05925 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH06_RS05930 PF00005 ABC transporter SH06_RS05935 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS05940 PF02668 Taurine catabolism dioxygenase TauD, TfdA family SH06_RS05945 PF00490 Delta-aminolevulinic acid dehydratase SH06_RS05955 PF13276 HTH-like domain SH06_RS05955 PF00665 Integrase core domain SH06_RS05955 PF13333 Integrase core domain SH06_RS05960 PF01527 Transposase SH06_RS05965 PF03212 Pertactin SH06_RS05965 PF03797 Autotransporter beta-domain SH06_RS05970 PF15977 Winged helix-turn-helix DNA binding SH06_RS05975 PF00144 Beta-lactamase SH06_RS05985 PF05992 SbmA/BacA-like family SH06_RS05990 PF07759 Protein of unknown function (DUF1615) SH06_RS05995 PF10954 Protein of unknown function (DUF2755) SH06_RS06000 PF10953 Protein of unknown function (DUF2754) SH06_RS06005 PF01820 D-ala D-ala ligase N-terminus SH06_RS06005 PF07478 D-ala D-ala ligase C-terminus SH06_RS06015 PF10796 Sigma-S stabilisation anti-adaptor protein SH06_RS06020 PF00245 Alkaline phosphatase SH06_RS06025 PF07769 psiF repeat SH06_RS06030 PF05230 MASE2 domain SH06_RS06030 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS06035 PF14748 Pyrroline-5-carboxylate reductase dimerisation SH06_RS06035 PF03807 NADP oxidoreductase coenzyme F420-dependent SH06_RS06040 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SH06_RS06045 PF01202 Shikimate kinase SH06_RS06050 PF16362 YaiA protein SH06_RS06060 PF07302 AroM protein SH06_RS06065 PF06865 Pyrimidine/purine nucleoside phosphorylase SH06_RS06070 PF10971 Protein of unknown function (DUF2773) SH06_RS06075 PF04381 Putative exonuclease, RdgC SH06_RS06080 PF00480 ROK family SH06_RS06085 PF07690 Major Facilitator Superfamily SH06_RS06090 PF13476 AAA domain SH06_RS06095 PF00149 Calcineurin-like phosphoesterase SH06_RS06095 PF12320 Type 5 capsule protein repressor C-terminal domain SH06_RS06100 PF00072 Response regulator receiver domain SH06_RS06100 PF00486 Transcriptional regulatory protein, C terminal SH06_RS06105 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS06105 PF00989 PAS fold SH06_RS06105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS06105 PF11808 Phosphate regulon sensor protein PhoR SH06_RS06110 PF05525 Branched-chain amino acid transport protein SH06_RS06115 PF00324 Amino acid permease SH06_RS06120 PF02903 Alpha amylase, N-terminal ig-like domain SH06_RS06120 PF00128 Alpha amylase, catalytic domain SH06_RS06125 PF04336 Acyl carrier protein phosphodiesterase SH06_RS06130 PF02547 Queuosine biosynthesis protein SH06_RS06135 PF01702 Queuine tRNA-ribosyltransferase SH06_RS06140 PF02699 Preprotein translocase subunit SH06_RS06145 PF02355 Protein export membrane protein SH06_RS06145 PF07549 SecD/SecF GG Motif SH06_RS06145 PF13721 SecD export protein N-terminal TM region SH06_RS06150 PF02355 Protein export membrane protein SH06_RS06150 PF07549 SecD/SecF GG Motif SH06_RS06155 PF01844 HNH endonuclease SH06_RS06165 PF03502 Nucleoside-specific channel-forming protein, Tsx SH06_RS06170 PF11622 Protein of unknown function (DUF3251) SH06_RS06175 PF03477 ATP cone domain SH06_RS06180 PF01872 RibD C-terminal domain SH06_RS06180 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SH06_RS06185 PF00885 6,7-dimethyl-8-ribityllumazine synthase SH06_RS06190 PF01029 NusB family SH06_RS06195 PF02769 AIR synthase related protein, C-terminal domain SH06_RS06195 PF00586 AIR synthase related protein, N-terminal domain SH06_RS06200 PF04608 Phosphatidylglycerophosphatase A SH06_RS06205 PF00248 Aldo/keto reductase family SH06_RS06210 PF02779 Transketolase, pyrimidine binding domain SH06_RS06210 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SH06_RS06210 PF02780 Transketolase, C-terminal domain SH06_RS06215 PF00348 Polyprenyl synthetase SH06_RS06220 PF02609 Exonuclease VII small subunit SH06_RS06225 PF02568 Thiamine biosynthesis protein (ThiI) SH06_RS06225 PF02926 THUMP domain SH06_RS06230 PF01965 DJ-1/PfpI family SH06_RS06235 PF08546 Ketopantoate reductase PanE/ApbA C terminal SH06_RS06235 PF02558 Ketopantoate reductase PanE/ApbA SH06_RS06240 PF04461 Protein of unknown function (DUF520) SH06_RS06245 PF07690 Major Facilitator Superfamily SH06_RS06250 PF01040 UbiA prenyltransferase family SH06_RS06255 PF03626 Prokaryotic Cytochrome C oxidase subunit IV SH06_RS06260 PF00510 Cytochrome c oxidase subunit III SH06_RS06265 PF00115 Cytochrome C and Quinol oxidase polypeptide I SH06_RS06270 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SH06_RS06270 PF06481 COX Aromatic Rich Motif SH06_RS06275 PF07690 Major Facilitator Superfamily SH06_RS06280 PF03923 Uncharacterized lipoprotein SH06_RS06280 PF08139 Prokaryotic membrane lipoprotein lipid attachment site SH06_RS06285 PF01722 BolA-like protein SH06_RS06295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH06_RS06295 PF05698 Bacterial trigger factor protein (TF) C-terminus SH06_RS06295 PF05697 Bacterial trigger factor protein (TF) SH06_RS06300 PF00574 Clp protease SH06_RS06305 PF07724 AAA domain (Cdc48 subfamily) SH06_RS06305 PF06689 ClpX C4-type zinc finger SH06_RS06305 PF10431 C-terminal, D2-small domain, of ClpB protein SH06_RS06310 PF00004 ATPase family associated with various cellular activities (AAA) SH06_RS06310 PF05362 Lon protease (S16) C-terminal proteolytic domain SH06_RS06310 PF02190 ATP-dependent protease La (LON) substrate-binding domain SH06_RS06315 PF00216 Bacterial DNA-binding protein SH06_RS06320 PF13145 PPIC-type PPIASE domain SH06_RS06335 PF06508 Queuosine biosynthesis protein QueC SH06_RS06340 PF12793 Sugar transport-related sRNA regulator N-term SH06_RS06340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH06_RS06350 PF13404 AsnC-type helix-turn-helix domain SH06_RS06350 PF01037 Lrp/AsnC ligand binding domain SH06_RS06355 PF00005 ABC transporter SH06_RS06355 PF00664 ABC transporter transmembrane region SH06_RS06360 PF00664 ABC transporter transmembrane region SH06_RS06360 PF00005 ABC transporter SH06_RS06365 PF00543 Nitrogen regulatory protein P-II SH06_RS06370 PF00909 Ammonium Transporter Family SH06_RS06380 PF09619 Type III secretion system lipoprotein chaperone (YscW) SH06_RS06385 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH06_RS06390 PF07237 Protein of unknown function (DUF1428) SH06_RS06395 PF12792 CSS motif domain associated with EAL SH06_RS06395 PF00563 EAL domain SH06_RS06400 PF10777 Inner membrane protein YlaC SH06_RS06405 PF12464 Maltose acetyltransferase SH06_RS06405 PF14602 Hexapeptide repeat of succinyl-transferase SH06_RS06410 PF05321 Haemolysin expression modulating protein SH06_RS06415 PF10757 Biofilm formation regulator YbaJ SH06_RS06420 PF00873 AcrB/AcrD/AcrF family SH06_RS06425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH06_RS06425 PF00529 HlyD membrane-fusion protein of T1SS SH06_RS06430 PF00440 Bacterial regulatory proteins, tetR family SH06_RS06430 PF08361 MAATS-type transcriptional repressor, C-terminal region SH06_RS06435 PF12794 Mechanosensitive ion channel inner membrane domain 1 SH06_RS06435 PF12795 Mechanosensitive ion channel porin domain SH06_RS06435 PF00924 Mechanosensitive ion channel SH06_RS06445 PF10689 Protein of unknown function (DUF2496) SH06_RS06450 PF07445 Primosomal replication protein priC SH06_RS06455 PF04304 Protein of unknown function (DUF454) SH06_RS06460 PF00156 Phosphoribosyl transferase domain SH06_RS06465 PF12170 DNA polymerase III tau subunit V interacting with alpha SH06_RS06465 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding SH06_RS06465 PF12169 DNA polymerase III subunits gamma and tau domain III SH06_RS06470 PF02575 YbaB/EbfC DNA-binding family SH06_RS06475 PF13662 Toprim domain SH06_RS06475 PF02132 RecR protein SH06_RS06480 PF00183 Hsp90 protein SH06_RS06480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS06485 PF05191 Adenylate kinase, active site lid SH06_RS06490 PF00762 Ferrochelatase SH06_RS06495 PF07859 alpha/beta hydrolase fold SH06_RS06500 PF00294 pfkB family carbohydrate kinase SH06_RS06505 PF02254 TrkA-N domain SH06_RS06505 PF00999 Sodium/hydrogen exchanger family SH06_RS06510 PF07690 Major Facilitator Superfamily SH06_RS06515 PF02872 5'-nucleotidase, C-terminal domain SH06_RS06515 PF00149 Calcineurin-like phosphoesterase SH06_RS06520 PF04073 Aminoacyl-tRNA editing domain SH06_RS06525 PF01963 TraB family SH06_RS06530 PF01381 Helix-turn-helix SH06_RS06535 PF00403 Heavy-metal-associated domain SH06_RS06540 PF04960 Glutaminase SH06_RS06545 PF13520 Amino acid permease SH06_RS06550 PF13411 MerR HTH family regulatory protein SH06_RS06555 PF01957 NfeD-like C-terminal, partner-binding SH06_RS06560 PF01145 SPFH domain / Band 7 family SH06_RS06560 PF16200 C-terminal region of band_7 SH06_RS06565 PF00005 ABC transporter SH06_RS06570 PF03649 Uncharacterised protein family (UPF0014) SH06_RS06575 PF00085 Thioredoxin SH06_RS06580 PF00106 short chain dehydrogenase SH06_RS06585 PF13472 GDSL-like Lipase/Acylhydrolase family SH06_RS06590 PF00005 ABC transporter SH06_RS06600 PF05593 RHS Repeat SH06_RS06600 PF14220 Domain of unknown function (DUF4329) SH06_RS06600 PF03527 RHS protein SH06_RS06605 PF15631 NTF2 fold immunity protein SH06_RS06610 PF03527 RHS protein SH06_RS06630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS06630 PF03466 LysR substrate binding domain SH06_RS06635 PF04115 Ureidoglycolate lyase SH06_RS06640 PF09339 IclR helix-turn-helix domain SH06_RS06640 PF01614 Bacterial transcriptional regulator SH06_RS06645 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH06_RS06645 PF00205 Thiamine pyrophosphate enzyme, central domain SH06_RS06645 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH06_RS06650 PF01261 Xylose isomerase-like TIM barrel SH06_RS06655 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH06_RS06655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH06_RS06660 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin SH06_RS06665 PF01979 Amidohydrolase family SH06_RS06670 PF00860 Permease family SH06_RS06675 PF02595 Glycerate kinase family SH06_RS06680 PF05899 Protein of unknown function (DUF861) SH06_RS06680 PF07883 Cupin domain SH06_RS06685 PF01546 Peptidase family M20/M25/M40 SH06_RS06690 PF02615 Malate/L-lactate dehydrogenase SH06_RS06695 PF00549 CoA-ligase SH06_RS06695 PF02629 CoA binding domain SH06_RS06700 PF06545 Protein of unknown function (DUF1116) SH06_RS06705 PF11392 Protein of unknown function (DUF2877) SH06_RS06710 PF00696 Amino acid kinase family SH06_RS06715 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SH06_RS06715 PF02222 ATP-grasp domain SH06_RS06720 PF00731 AIR carboxylase SH06_RS06725 PF12850 Calcineurin-like phosphoesterase superfamily domain SH06_RS06730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SH06_RS06735 PF09190 DALR domain SH06_RS06735 PF01406 tRNA synthetases class I (C) catalytic domain SH06_RS06740 PF04307 LexA-binding, inner membrane-associated putative hydrolase SH06_RS06750 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SH06_RS06750 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SH06_RS06755 PF00419 Fimbrial protein SH06_RS06760 PF02753 Pili assembly chaperone PapD, C-terminal domain SH06_RS06760 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH06_RS06765 PF13953 PapC C-terminal domain SH06_RS06765 PF13954 PapC N-terminal domain SH06_RS06765 PF00577 Outer membrane usher protein SH06_RS06770 PF00419 Fimbrial protein SH06_RS06775 PF00419 Fimbrial protein SH06_RS06780 PF00072 Response regulator receiver domain SH06_RS06780 PF00196 Bacterial regulatory proteins, luxR family SH06_RS06790 PF00589 Phage integrase family SH06_RS06800 PF06992 Replication protein P SH06_RS06810 PF01527 Transposase SH06_RS06815 PF13276 HTH-like domain SH06_RS06815 PF00665 Integrase core domain SH06_RS06815 PF13333 Integrase core domain SH06_RS06825 PF00893 Small Multidrug Resistance protein SH06_RS06835 PF07508 Recombinase SH06_RS06835 PF13408 Recombinase zinc beta ribbon domain SH06_RS06835 PF00239 Resolvase, N terminal domain SH06_RS06840 PF01161 Phosphatidylethanolamine-binding protein SH06_RS06845 PF12833 Helix-turn-helix domain SH06_RS06860 PF07102 Protein of unknown function (DUF1364) SH06_RS06865 PF05866 Endodeoxyribonuclease RusA SH06_RS06875 PF06530 Phage antitermination protein Q SH06_RS06885 PF01609 Transposase DDE domain SH06_RS06885 PF05598 Transposase domain (DUF772) SH06_RS06890 PF00267 Gram-negative porin SH06_RS06895 PF04971 Bacteriophage P21 holin S SH06_RS06900 PF00959 Phage lysozyme SH06_RS06905 PF03245 Bacteriophage Rz lysis protein SH06_RS06910 PF06291 Bor protein SH06_RS06920 PF07166 Protein of unknown function (DUF1398) SH06_RS06930 PF13132 Domain of unknown function (DUF3950) SH06_RS06940 PF07471 Phage DNA packaging protein Nu1 SH06_RS06945 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH06_RS06950 PF08242 Methyltransferase domain SH06_RS06960 PF12833 Helix-turn-helix domain SH06_RS06965 PF01278 Omptin family SH06_RS06975 PF12833 Helix-turn-helix domain SH06_RS06980 PF14488 Domain of unknown function (DUF4434) SH06_RS06985 PF13283 Bacteriophage N adsorption protein A C-term SH06_RS06990 PF13632 Glycosyl transferase family group 2 SH06_RS06990 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SH06_RS06995 PF00672 HAMP domain SH06_RS06995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS06995 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS07000 PF00486 Transcriptional regulatory protein, C terminal SH06_RS07000 PF00072 Response regulator receiver domain SH06_RS07005 PF02321 Outer membrane efflux protein SH06_RS07010 PF11604 Copper binding periplasmic protein CusF SH06_RS07015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH06_RS07015 PF00529 HlyD membrane-fusion protein of T1SS SH06_RS07020 PF00873 AcrB/AcrD/AcrF family SH06_RS07025 PF00324 Amino acid permease SH06_RS07030 PF00924 Mechanosensitive ion channel SH06_RS07035 PF00881 Nitroreductase family SH06_RS07040 PF04237 YjbR SH06_RS07045 PF06643 Protein of unknown function (DUF1158) SH06_RS07050 PF04107 Glutamate-cysteine ligase family 2(GCS2) SH06_RS07060 PF01848 Hok/gef family SH06_RS07065 PF01609 Transposase DDE domain SH06_RS07070 PF01648 4'-phosphopantetheinyl transferase superfamily SH06_RS07070 PF17837 4'-phosphopantetheinyl transferase N-terminal domain SH06_RS07075 PF00593 TonB dependent receptor SH06_RS07075 PF07715 TonB-dependent Receptor Plug Domain SH06_RS07080 PF11806 Domain of unknown function (DUF3327) SH06_RS07080 PF00756 Putative esterase SH06_RS07085 PF03621 MbtH-like protein SH06_RS07090 PF00975 Thioesterase domain SH06_RS07090 PF00668 Condensation domain SH06_RS07090 PF13193 AMP-binding enzyme C-terminal domain SH06_RS07090 PF00501 AMP-binding enzyme SH06_RS07090 PF00550 Phosphopantetheine attachment site SH06_RS07095 PF02706 Chain length determinant protein SH06_RS07100 PF00005 ABC transporter SH06_RS07105 PF01032 FecCD transport family SH06_RS07110 PF01032 FecCD transport family SH06_RS07115 PF05977 Transmembrane secretion effector SH06_RS07120 PF01497 Periplasmic binding protein SH06_RS07125 PF00425 chorismate binding enzyme SH06_RS07130 PF00501 AMP-binding enzyme SH06_RS07130 PF13193 AMP-binding enzyme C-terminal domain SH06_RS07135 PF00550 Phosphopantetheine attachment site SH06_RS07135 PF00857 Isochorismatase family SH06_RS07145 PF03061 Thioesterase superfamily SH06_RS07150 PF13722 5TM C-terminal transporter carbon starvation CstA SH06_RS07150 PF02554 Carbon starvation protein CstA SH06_RS07155 PF04328 Selenoprotein, putative SH06_RS07160 PF00465 Iron-containing alcohol dehydrogenase SH06_RS07165 PF00155 Aminotransferase class I and II SH06_RS07170 PF02195 ParB-like nuclease domain SH06_RS07175 PF11922 Domain of unknown function (DUF3440) SH06_RS07175 PF01507 Phosphoadenosine phosphosulfate reductase family SH06_RS07180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS07180 PF03466 LysR substrate binding domain SH06_RS07185 PF13098 Thioredoxin-like domain SH06_RS07190 PF10417 C-terminal domain of 1-Cys peroxiredoxin SH06_RS07190 PF00578 AhpC/TSA family SH06_RS07195 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH06_RS07195 PF13192 Thioredoxin domain SH06_RS07200 PF00582 Universal stress protein family SH06_RS07205 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS07205 PF13823 Alcohol dehydrogenase GroES-associated SH06_RS07205 PF00107 Zinc-binding dehydrogenase SH06_RS07215 PF14760 Rnk N-terminus SH06_RS07215 PF01272 Transcription elongation factor, GreA/GreB, C-term SH06_RS07220 PF00445 Ribonuclease T2 family SH06_RS07225 PF00939 Sodium:sulfate symporter transmembrane region SH06_RS07230 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SH06_RS07235 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase SH06_RS07240 PF04223 Citrate lyase, alpha subunit (CitF) SH06_RS07245 PF03328 HpcH/HpaI aldolase/citrate lyase family SH06_RS07250 PF06857 Malonate decarboxylase delta subunit (MdcD) SH06_RS07255 PF08218 Citrate lyase ligase C-terminal domain SH06_RS07260 PF17203 Single cache domain 3 SH06_RS07260 PF00989 PAS fold SH06_RS07260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS07260 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SH06_RS07265 PF00072 Response regulator receiver domain SH06_RS07265 PF12431 Transcriptional regulator SH06_RS07270 PF03606 C4-dicarboxylate anaerobic carrier SH06_RS07275 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP SH06_RS07280 PF00313 'Cold-shock' DNA-binding domain SH06_RS07285 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SH06_RS07295 PF02416 mttA/Hcf106 family SH06_RS07300 PF04055 Radical SAM superfamily SH06_RS07300 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family SH06_RS07305 PF03466 LysR substrate binding domain SH06_RS07305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS07315 PF03099 Biotin/lipoate A/B protein ligase family SH06_RS07320 PF04359 Protein of unknown function (DUF493) SH06_RS07325 PF00768 D-alanyl-D-alanine carboxypeptidase SH06_RS07325 PF07943 Penicillin-binding protein 5, C-terminal domain SH06_RS07330 PF05036 Sporulation related domain SH06_RS07330 PF03330 Lytic transglycolase SH06_RS07335 PF01098 Cell cycle protein SH06_RS07340 PF00905 Penicillin binding protein transpeptidase domain SH06_RS07340 PF03717 Penicillin-binding Protein dimerisation domain SH06_RS07345 PF02590 Predicted SPOUT methyltransferase SH06_RS07355 PF00300 Histidine phosphatase superfamily (branch 1) SH06_RS07360 PF01467 Cytidylyltransferase-like SH06_RS07365 PF06144 DNA polymerase III, delta subunit SH06_RS07365 PF14840 Processivity clamp loader gamma complex DNA pol III C-term SH06_RS07370 PF04390 Lipopolysaccharide-assembly SH06_RS07375 PF08264 Anticodon-binding domain of tRNA SH06_RS07375 PF13603 Leucyl-tRNA synthetase, Domain 2 SH06_RS07375 PF00133 tRNA synthetases class I (I, L, M and V) SH06_RS07380 PF07295 Zinc-ribbon containing domain SH06_RS07385 PF08238 Sel1 repeat SH06_RS07390 PF06889 Protein of unknown function (DUF1266) SH06_RS07400 PF08238 Sel1 repeat SH06_RS07405 PF06889 Protein of unknown function (DUF1266) SH06_RS07415 PF00012 Hsp70 protein SH06_RS07420 PF01156 Inosine-uridine preferring nucleoside hydrolase SH06_RS07425 PF00005 ABC transporter SH06_RS07430 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS07435 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS07440 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH06_RS07445 PF05598 Transposase domain (DUF772) SH06_RS07445 PF01609 Transposase DDE domain SH06_RS07450 PF00795 Carbon-nitrogen hydrolase SH06_RS07455 PF03471 Transporter associated domain SH06_RS07455 PF00571 CBS domain SH06_RS07460 PF02130 Uncharacterized protein family UPF0054 SH06_RS07465 PF02562 PhoH-like protein SH06_RS07470 PF00919 Uncharacterized protein family UPF0004 SH06_RS07470 PF04055 Radical SAM superfamily SH06_RS07470 PF01938 TRAM domain SH06_RS07475 PF01494 FAD binding domain SH06_RS07515 PF00733 Asparagine synthase SH06_RS07515 PF13537 Glutamine amidotransferase domain SH06_RS07520 PF13344 Haloacid dehalogenase-like hydrolase SH06_RS07525 PF00480 ROK family SH06_RS07525 PF01047 MarR family SH06_RS07530 PF01979 Amidohydrolase family SH06_RS07535 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH06_RS07540 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH06_RS07540 PF00367 phosphotransferase system, EIIB SH06_RS07540 PF02378 Phosphotransferase system, EIIC SH06_RS07545 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH06_RS07545 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SH06_RS07550 PF03573 outer membrane porin, OprD family SH06_RS07555 PF13982 YbfN-like lipoprotein SH06_RS07560 PF01475 Ferric uptake regulator family SH06_RS07575 PF00258 Flavodoxin SH06_RS07580 PF01402 Ribbon-helix-helix protein, copG family SH06_RS07585 PF12697 Alpha/beta hydrolase family SH06_RS07590 PF17206 SeqA protein N-terminal domain SH06_RS07590 PF03925 SeqA protein C-terminal domain SH06_RS07595 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH06_RS07595 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH06_RS07595 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH06_RS07595 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH06_RS07615 PF13520 Amino acid permease SH06_RS07620 PF01276 Orn/Lys/Arg decarboxylase, major domain SH06_RS07620 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH06_RS07620 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH06_RS07630 PF00486 Transcriptional regulatory protein, C terminal SH06_RS07630 PF00072 Response regulator receiver domain SH06_RS07635 PF13492 GAF domain SH06_RS07635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS07635 PF02702 Osmosensitive K+ channel His kinase sensor domain SH06_RS07635 PF13493 Domain of unknown function (DUF4118) SH06_RS07635 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS07640 PF02669 K+-transporting ATPase, c chain SH06_RS07650 PF03814 Potassium-transporting ATPase A subunit SH06_RS07655 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) SH06_RS07660 PF10725 Protein of unknown function (DUF2517) SH06_RS07665 PF03527 RHS protein SH06_RS07665 PF05593 RHS Repeat SH06_RS07675 PF05593 RHS Repeat SH06_RS07675 PF03527 RHS protein SH06_RS07685 PF13808 DDE_Tnp_1-associated SH06_RS07690 PF01609 Transposase DDE domain SH06_RS07690 PF13808 DDE_Tnp_1-associated SH06_RS07695 PF01609 Transposase DDE domain SH06_RS07695 PF13808 DDE_Tnp_1-associated SH06_RS07700 PF08349 Protein of unknown function (DUF1722) SH06_RS07705 PF03441 FAD binding domain of DNA photolyase SH06_RS07705 PF00875 DNA photolyase SH06_RS07710 PF00854 POT family SH06_RS07715 PF01784 NIF3 (NGG1p interacting factor 3) SH06_RS07720 PF02682 Carboxyltransferase domain, subdomain C and D SH06_RS07725 PF02626 Carboxyltransferase domain, subdomain A and B SH06_RS07730 PF03746 LamB/YcsF family SH06_RS07735 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SH06_RS07735 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SH06_RS07735 PF06827 Zinc finger found in FPG and IleRS SH06_RS07740 PF05145 Transition state regulatory protein AbrB SH06_RS07745 PF00419 Fimbrial protein SH06_RS07750 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH06_RS07750 PF02753 Pili assembly chaperone PapD, C-terminal domain SH06_RS07755 PF13954 PapC N-terminal domain SH06_RS07755 PF00577 Outer membrane usher protein SH06_RS07755 PF13953 PapC C-terminal domain SH06_RS07760 PF00419 Fimbrial protein SH06_RS07765 PF00285 Citrate synthase, C-terminal domain SH06_RS07775 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SH06_RS07780 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SH06_RS07785 PF02910 Fumarate reductase flavoprotein C-term SH06_RS07785 PF00890 FAD binding domain SH06_RS07790 PF13085 2Fe-2S iron-sulfur cluster binding domain SH06_RS07800 PF16078 2-oxoglutarate dehydrogenase N-terminus SH06_RS07800 PF00676 Dehydrogenase E1 component SH06_RS07800 PF16870 2-oxoglutarate dehydrogenase C-terminal SH06_RS07800 PF02779 Transketolase, pyrimidine binding domain SH06_RS07805 PF00364 Biotin-requiring enzyme SH06_RS07805 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH06_RS07805 PF02817 e3 binding domain SH06_RS07810 PF08442 ATP-grasp domain SH06_RS07810 PF00549 CoA-ligase SH06_RS07815 PF02629 CoA binding domain SH06_RS07815 PF00549 CoA-ligase SH06_RS07820 PF07702 UTRA domain SH06_RS07820 PF00392 Bacterial regulatory proteins, gntR family SH06_RS07825 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH06_RS07825 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH06_RS07825 PF02378 Phosphotransferase system, EIIC SH06_RS07830 PF09261 Alpha mannosidase middle domain SH06_RS07830 PF07748 Glycosyl hydrolases family 38 C-terminal domain SH06_RS07830 PF01074 Glycosyl hydrolases family 38 N-terminal domain SH06_RS07840 PF01654 Cytochrome bd terminal oxidase subunit I SH06_RS07845 PF02322 Cytochrome bd terminal oxidase subunit II SH06_RS07850 PF08173 Membrane bound YbgT-like protein SH06_RS07855 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) SH06_RS07860 PF03061 Thioesterase superfamily SH06_RS07865 PF01618 MotA/TolQ/ExbB proton channel family SH06_RS07870 PF02472 Biopolymer transport protein ExbD/TolR SH06_RS07875 PF06519 TolA C-terminal SH06_RS07880 PF07676 WD40-like Beta Propeller Repeat SH06_RS07880 PF04052 TolB amino-terminal domain SH06_RS07885 PF00691 OmpA family SH06_RS07890 PF16331 TolA binding protein trimerisation SH06_RS07890 PF13174 Tetratricopeptide repeat SH06_RS07930 PF02445 Quinolinate synthetase A protein SH06_RS07935 PF04973 Nicotinamide mononucleotide transporter SH06_RS07940 PF01545 Cation efflux family SH06_RS07945 PF13985 YbgS-like protein SH06_RS07955 PF00793 DAHP synthetase I family SH06_RS07960 PF00300 Histidine phosphatase superfamily (branch 1) SH06_RS07965 PF01263 Aldose 1-epimerase SH06_RS07970 PF00288 GHMP kinases N terminal domain SH06_RS07970 PF08544 GHMP kinases C terminal SH06_RS07970 PF10509 Galactokinase galactose-binding signature SH06_RS07975 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SH06_RS07975 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SH06_RS07980 PF16363 GDP-mannose 4,6 dehydratase SH06_RS07985 PF00005 ABC transporter SH06_RS07990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS07990 PF03459 TOBE domain SH06_RS07995 PF10766 Multidrug efflux pump-associated protein AcrZ SH06_RS08005 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS08010 PF00005 ABC transporter SH06_RS08010 PF03459 TOBE domain SH06_RS08020 PF10282 Lactonase, 7-bladed beta-propeller SH06_RS08025 PF03466 LysR substrate binding domain SH06_RS08025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS08030 PF04303 PrpF protein SH06_RS08035 PF00939 Sodium:sulfate symporter transmembrane region SH06_RS08040 PF00694 Aconitase C-terminal domain SH06_RS08040 PF00330 Aconitase family (aconitate hydratase) SH06_RS08045 PF01095 Pectinesterase SH06_RS08050 PF01161 Phosphatidylethanolamine-binding protein SH06_RS08055 PF00202 Aminotransferase class-III SH06_RS08060 PF04055 Radical SAM superfamily SH06_RS08060 PF06968 Biotin and Thiamin Synthesis associated domain SH06_RS08065 PF00155 Aminotransferase class I and II SH06_RS08070 PF08241 Methyltransferase domain SH06_RS08080 PF04851 Type III restriction enzyme, res subunit SH06_RS08080 PF00271 Helicase conserved C-terminal domain SH06_RS08080 PF17757 UvrB interaction domain SH06_RS08080 PF12344 Ultra-violet resistance protein B SH06_RS08080 PF02151 UvrB/uvrC motif SH06_RS08085 PF01933 Uncharacterised protein family UPF0052 SH06_RS08095 PF06463 Molybdenum Cofactor Synthesis C SH06_RS08095 PF04055 Radical SAM superfamily SH06_RS08100 PF00994 Probable molybdopterin binding domain SH06_RS08105 PF01967 MoaC family SH06_RS08110 PF02597 ThiS family SH06_RS08115 PF02391 MoaE protein SH06_RS08120 PF01027 Inhibitor of apoptosis-promoting Bax1 SH06_RS08125 PF01027 Inhibitor of apoptosis-promoting Bax1 SH06_RS08130 PF03706 Lysylphosphatidylglycerol synthase TM region SH06_RS08135 PF13091 PLD-like domain SH06_RS08140 PF03372 Endonuclease/Exonuclease/phosphatase family SH06_RS08145 PF11076 Putative inner membrane protein YbhQ SH06_RS08160 PF00005 ABC transporter SH06_RS08165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH06_RS08170 PF00440 Bacterial regulatory proteins, tetR family SH06_RS08170 PF09209 Tetracyclin repressor-like, C-terminal domain SH06_RS08175 PF00270 DEAD/DEAH box helicase SH06_RS08175 PF00271 Helicase conserved C-terminal domain SH06_RS08180 PF08719 Domain of unknown function (DUF1768) SH06_RS08185 PF00270 DEAD/DEAH box helicase SH06_RS08185 PF06733 DEAD_2 SH06_RS08185 PF13307 Helicase C-terminal domain SH06_RS08190 PF02885 Glycosyl transferase family, helical bundle domain SH06_RS08195 PF02615 Malate/L-lactate dehydrogenase SH06_RS08200 PF07338 Protein of unknown function (DUF1471) SH06_RS08205 PF01258 Prokaryotic dksA/traR C4-type zinc finger SH06_RS08210 PF13640 2OG-Fe(II) oxygenase superfamily SH06_RS08210 PF18331 PKHD-type hydroxylase C-terminal domain SH06_RS08215 PF07715 TonB-dependent Receptor Plug Domain SH06_RS08215 PF00593 TonB dependent receptor SH06_RS08220 PF07338 Protein of unknown function (DUF1471) SH06_RS08225 PF05971 RNA methyltransferase SH06_RS08230 PF00924 Mechanosensitive ion channel SH06_RS08235 PF00005 ABC transporter SH06_RS08240 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS08245 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH06_RS08255 PF00210 Ferritin-like domain SH06_RS08260 PF00892 EamA-like transporter family SH06_RS08265 PF13505 Outer membrane protein beta-barrel domain SH06_RS08270 PF00884 Sulfatase SH06_RS08280 PF01325 Iron dependent repressor, N-terminal DNA binding domain SH06_RS08280 PF02742 Iron dependent repressor, metal binding and dimerisation domain SH06_RS08285 PF03600 Citrate transporter SH06_RS08290 PF17969 L,D-transpeptidase C-terminal domain SH06_RS08290 PF03734 L,D-transpeptidase catalytic domain SH06_RS08295 PF00005 ABC transporter SH06_RS08295 PF12848 ABC transporter SH06_RS08300 PF07350 Protein of unknown function (DUF1479) SH06_RS08310 PF02901 Pyruvate formate lyase-like SH06_RS08310 PF01228 Glycine radical SH06_RS08315 PF04055 Radical SAM superfamily SH06_RS08320 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH06_RS08325 PF00899 ThiF family SH06_RS08330 PF03453 MoeA N-terminal region (domain I and II) SH06_RS08330 PF03454 MoeA C-terminal region (domain IV) SH06_RS08330 PF00994 Probable molybdopterin binding domain SH06_RS08335 PF01112 Asparaginase SH06_RS08340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH06_RS08340 PF00005 ABC transporter SH06_RS08345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH06_RS08350 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS08355 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS08355 PF12911 N-terminal TM domain of oligopeptide transport permease C SH06_RS08360 PF00563 EAL domain SH06_RS08360 PF17153 Periplasmic sensor domain, extracellular SH06_RS08365 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS08365 PF17156 Gammaproteobacterial periplasmic sensor domain SH06_RS08370 PF00919 Uncharacterized protein family UPF0004 SH06_RS08370 PF18693 TRAM domain SH06_RS08370 PF04055 Radical SAM superfamily SH06_RS08375 PF10799 Biofilm formation protein (YliH/bssR) SH06_RS08380 PF07995 Glucose / Sorbosone dehydrogenase SH06_RS08385 PF00043 Glutathione S-transferase, C-terminal domain SH06_RS08385 PF13417 Glutathione S-transferase, N-terminal domain SH06_RS08390 PF07943 Penicillin-binding protein 5, C-terminal domain SH06_RS08390 PF00768 D-alanyl-D-alanine carboxypeptidase SH06_RS08395 PF00455 DeoR C terminal sensor domain SH06_RS08395 PF08220 DeoR-like helix-turn-helix domain SH06_RS08400 PF01569 PAP2 superfamily SH06_RS08405 PF07690 Major Facilitator Superfamily SH06_RS08420 PF07690 Major Facilitator Superfamily SH06_RS08425 PF00440 Bacterial regulatory proteins, tetR family SH06_RS08430 PF06826 Predicted Permease Membrane Region SH06_RS08430 PF02080 TrkA-C domain SH06_RS08435 PF11045 Putative inner membrane protein of Enterobacteriaceae SH06_RS08440 PF00462 Glutaredoxin SH06_RS08445 PF07214 Protein of unknown function (DUF1418) SH06_RS08450 PF00881 Nitroreductase family SH06_RS08455 PF08443 RimK-like ATP-grasp domain SH06_RS08455 PF18030 RimK PreATP-grasp domain SH06_RS08460 PF10722 Putative bacterial sensory transduction regulator SH06_RS08470 PF13416 Bacterial extracellular solute-binding protein SH06_RS08475 PF08402 TOBE domain SH06_RS08475 PF00005 ABC transporter SH06_RS08480 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS08485 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS08490 PF10767 Protein of unknown function (DUF2593) SH06_RS08495 PF05958 tRNA (Uracil-5-)-methyltransferase SH06_RS08500 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH06_RS08505 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS08510 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS08515 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH06_RS08520 PF00005 ABC transporter SH06_RS08525 PF12883 Protein of unknown function (DUF3828) SH06_RS08530 PF01906 Putative heavy-metal-binding SH06_RS08535 PF01510 N-acetylmuramoyl-L-alanine amidase SH06_RS08540 PF01370 NAD dependent epimerase/dehydratase family SH06_RS08545 PF13460 NAD(P)H-binding SH06_RS08545 PF11066 Protein of unknown function (DUF2867) SH06_RS08550 PF01212 Beta-eliminating lyase SH06_RS08555 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH06_RS08555 PF00205 Thiamine pyrophosphate enzyme, central domain SH06_RS08555 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH06_RS08560 PF00175 Oxidoreductase NAD-binding domain SH06_RS08560 PF00111 2Fe-2S iron-sulfur cluster binding domain SH06_RS08560 PF00970 Oxidoreductase FAD-binding domain SH06_RS08565 PF03063 Prismane/CO dehydrogenase family SH06_RS08570 PF03956 Lysine exporter LysO SH06_RS08575 PF00230 Major intrinsic protein SH06_RS08585 PF11398 Protein of unknown function (DUF2813) SH06_RS08590 PF04393 Protein of unknown function (DUF535) SH06_RS08595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH06_RS08600 PF00005 ABC transporter SH06_RS08600 PF02687 FtsX-like permease family SH06_RS08600 PF12704 MacB-like periplasmic core domain SH06_RS08605 PF00313 'Cold-shock' DNA-binding domain SH06_RS08610 PF02617 ATP-dependent Clp protease adaptor protein ClpS SH06_RS08615 PF00004 ATPase family associated with various cellular activities (AAA) SH06_RS08615 PF10431 C-terminal, D2-small domain, of ClpB protein SH06_RS08615 PF17871 AAA lid domain SH06_RS08615 PF02861 Clp amino terminal domain, pathogenicity island component SH06_RS08615 PF07724 AAA domain (Cdc48 subfamily) SH06_RS08625 PF01176 Translation initiation factor 1A / IF-1 SH06_RS08630 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SH06_RS08635 PF00005 ABC transporter SH06_RS08635 PF00664 ABC transporter transmembrane region SH06_RS08640 PF00664 ABC transporter transmembrane region SH06_RS08640 PF00005 ABC transporter SH06_RS08645 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH06_RS08650 PF01037 Lrp/AsnC ligand binding domain SH06_RS08655 PF09397 Ftsk gamma domain SH06_RS08655 PF17854 FtsK alpha domain SH06_RS08655 PF13491 4TM region of DNA translocase FtsK/SpoIIIE SH06_RS08655 PF01580 FtsK/SpoIIIE family SH06_RS08660 PF03548 Outer membrane lipoprotein carrier protein LolA SH06_RS08665 PF00004 ATPase family associated with various cellular activities (AAA) SH06_RS08665 PF16193 AAA C-terminal domain SH06_RS08665 PF12002 MgsA AAA+ ATPase C terminal SH06_RS08670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH06_RS08670 PF02403 Seryl-tRNA synthetase N-terminal domain SH06_RS08675 PF01568 Molydopterin dinucleotide binding domain SH06_RS08675 PF00384 Molybdopterin oxidoreductase SH06_RS08675 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS08680 PF12800 4Fe-4S binding domain SH06_RS08680 PF13247 4Fe-4S dicluster domain SH06_RS08685 PF04976 DMSO reductase anchor subunit (DmsC) SH06_RS08690 PF00857 Isochorismatase family SH06_RS08695 PF07690 Major Facilitator Superfamily SH06_RS08700 PF13520 Amino acid permease SH06_RS08705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS08705 PF03466 LysR substrate binding domain SH06_RS08710 PF02525 Flavodoxin-like fold SH06_RS08715 PF04055 Radical SAM superfamily SH06_RS08720 PF02901 Pyruvate formate lyase-like SH06_RS08720 PF01228 Glycine radical SH06_RS08725 PF01226 Formate/nitrite transporter SH06_RS08730 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding SH06_RS08730 PF18381 YcaO cyclodehydratase C-terminal domain SH06_RS08735 PF04239 Protein of unknown function (DUF421) SH06_RS08740 PF00266 Aminotransferase class-V SH06_RS08745 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SH06_RS08750 PF01435 Peptidase family M48 SH06_RS08755 PF02224 Cytidylate kinase SH06_RS08760 PF00575 S1 RNA binding domain SH06_RS08765 PF00216 Bacterial DNA-binding protein SH06_RS08770 PF03772 Competence protein SH06_RS08770 PF00753 Metallo-beta-lactamase superfamily SH06_RS08775 PF00664 ABC transporter transmembrane region SH06_RS08775 PF00005 ABC transporter SH06_RS08780 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SH06_RS08785 PF06224 Winged helix DNA-binding domain SH06_RS08790 PF03966 Trm112p-like protein SH06_RS08795 PF02348 Cytidylyltransferase SH06_RS08800 PF01636 Phosphotransferase enzyme family SH06_RS08805 PF02698 DUF218 domain SH06_RS08810 PF13847 Methyltransferase domain SH06_RS08815 PF03882 MukF winged-helix domain SH06_RS08815 PF17192 MukF middle domain SH06_RS08815 PF17193 MukF C-terminal domain SH06_RS08820 PF04288 MukE-like family SH06_RS08825 PF04310 MukB N-terminal SH06_RS08825 PF16330 MukB hinge domain SH06_RS08830 PF01471 Putative peptidoglycan binding domain SH06_RS08830 PF03734 L,D-transpeptidase catalytic domain SH06_RS08835 PF05951 Bacterial protein of unknown function (DUF882) SH06_RS08840 PF00753 Metallo-beta-lactamase superfamily SH06_RS08845 PF00155 Aminotransferase class I and II SH06_RS08855 PF00267 Gram-negative porin SH06_RS08860 PF01336 OB-fold nucleic acid binding domain SH06_RS08860 PF00152 tRNA synthetases class II (D, K and N) SH06_RS08865 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SH06_RS08865 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SH06_RS08870 PF17432 Domain of unknown function (DUF3458_C) ARM repeats SH06_RS08870 PF11940 Domain of unknown function (DUF3458) Ig-like fold SH06_RS08870 PF01433 Peptidase family M1 domain SH06_RS08875 PF00005 ABC transporter SH06_RS08880 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS08885 PF00296 Luciferase-like monooxygenase SH06_RS08890 PF09084 NMT1/THI5 like SH06_RS08895 PF03358 NADPH-dependent FMN reductase SH06_RS08900 PF00419 Fimbrial protein SH06_RS08905 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH06_RS08905 PF02753 Pili assembly chaperone PapD, C-terminal domain SH06_RS08910 PF13954 PapC N-terminal domain SH06_RS08910 PF00577 Outer membrane usher protein SH06_RS08910 PF13953 PapC C-terminal domain SH06_RS08915 PF00419 Fimbrial protein SH06_RS08920 PF00419 Fimbrial protein SH06_RS08925 PF00419 Fimbrial protein SH06_RS08930 PF02753 Pili assembly chaperone PapD, C-terminal domain SH06_RS08930 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH06_RS08935 PF01180 Dihydroorotate dehydrogenase SH06_RS08940 PF07126 Cell-division protein ZapC SH06_RS08945 PF03476 MOSC N-terminal beta barrel domain SH06_RS08945 PF00111 2Fe-2S iron-sulfur cluster binding domain SH06_RS08945 PF03473 MOSC domain SH06_RS08950 PF01170 Putative RNA methylase family UPF0020 SH06_RS08950 PF10672 S-adenosylmethionine-dependent methyltransferase SH06_RS08950 PF02926 THUMP domain SH06_RS08955 PF16326 ABC transporter C-terminal domain SH06_RS08955 PF12848 ABC transporter SH06_RS08955 PF00005 ABC transporter SH06_RS08960 PF04403 Paraquat-inducible protein A SH06_RS08965 PF02470 MlaD protein SH06_RS08970 PF03886 ABC-type transport auxiliary lipoprotein component SH06_RS08975 PF04957 Ribosome modulation factor SH06_RS08980 PF07977 FabA-like domain SH06_RS08985 PF13654 AAA domain SH06_RS08985 PF05362 Lon protease (S16) C-terminal proteolytic domain SH06_RS08990 PF17414 MatP C-terminal ribbon-helix-helix domain SH06_RS08990 PF06303 MatP N-terminal domain SH06_RS08995 PF00691 OmpA family SH06_RS08995 PF01389 OmpA-like transmembrane domain SH06_RS09005 PF03846 Cell division inhibitor SulA SH06_RS09010 PF04993 TfoX N-terminal domain SH06_RS09010 PF04994 TfoX C-terminal domain SH06_RS09015 PF12805 FUSC-like inner membrane protein yccS SH06_RS09020 PF03733 Inner membrane component domain SH06_RS09025 PF12462 DNA helicase IV / RNA helicase N terminal SH06_RS09025 PF00580 UvrD/REP helicase N-terminal domain SH06_RS09025 PF13361 UvrD-like helicase C-terminal domain SH06_RS09030 PF02142 MGS-like domain SH06_RS09035 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) SH06_RS09045 PF13380 CoA binding domain SH06_RS09050 PF08755 Hemimethylated DNA-binding protein YccV like SH06_RS09055 PF17785 PUA-like domain SH06_RS09055 PF10672 S-adenosylmethionine-dependent methyltransferase SH06_RS09060 PF00708 Acylphosphatase SH06_RS09065 PF04358 DsrC like protein SH06_RS09070 PF01027 Inhibitor of apoptosis-promoting Bax1 SH06_RS09080 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SH06_RS09080 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH06_RS09085 PF00374 Nickel-dependent hydrogenase SH06_RS09090 PF01292 Prokaryotic cytochrome b561 SH06_RS09095 PF01750 Hydrogenase maturation protease SH06_RS09100 PF07449 Hydrogenase-1 expression protein HyaE SH06_RS09105 PF04809 HupH hydrogenase expression protein, C-terminal conserved region SH06_RS09110 PF01654 Cytochrome bd terminal oxidase subunit I SH06_RS09115 PF02322 Cytochrome bd terminal oxidase subunit II SH06_RS09120 PF08173 Membrane bound YbgT-like protein SH06_RS09125 PF00328 Histidine phosphatase superfamily (branch 2) SH06_RS09130 PF13614 AAA domain SH06_RS09130 PF13807 G-rich domain on putative tyrosine kinase SH06_RS09130 PF02706 Chain length determinant protein SH06_RS09135 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH06_RS09140 PF18412 Outer-membrane lipoprotein Wza C-terminal domain SH06_RS09140 PF02563 Polysaccharide biosynthesis/export protein SH06_RS09140 PF10531 SLBB domain SH06_RS09145 PF06082 Exopolysaccharide biosynthesis protein YbjH SH06_RS09150 PF06251 Capsule biosynthesis GfcC SH06_RS09155 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF SH06_RS09170 PF03400 IS1 transposase SH06_RS09175 PF00313 'Cold-shock' DNA-binding domain SH06_RS09180 PF00313 'Cold-shock' DNA-binding domain SH06_RS09185 PF15939 Putative antitoxin of bacterial toxin-antitoxin system SH06_RS09190 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system SH06_RS09195 PF12801 4Fe-4S binding domain SH06_RS09200 PF00672 HAMP domain SH06_RS09200 PF00072 Response regulator receiver domain SH06_RS09200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS09200 PF01627 Hpt domain SH06_RS09200 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS09205 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH06_RS09210 PF00486 Transcriptional regulatory protein, C terminal SH06_RS09210 PF00072 Response regulator receiver domain SH06_RS09215 PF03264 NapC/NirT cytochrome c family, N-terminal region SH06_RS09220 PF01568 Molydopterin dinucleotide binding domain SH06_RS09220 PF18364 Molybdopterin oxidoreductase N-terminal domain SH06_RS09220 PF00384 Molybdopterin oxidoreductase SH06_RS09225 PF02613 Nitrate reductase delta subunit SH06_RS09235 PF00226 DnaJ domain SH06_RS09235 PF01556 DnaJ C terminal domain SH06_RS09245 PF00328 Histidine phosphatase superfamily (branch 2) SH06_RS09250 PF13993 YccJ-like protein SH06_RS09255 PF03358 NADPH-dependent FMN reductase SH06_RS09265 PF10685 Stress-induced bacterial acidophilic repeat motif SH06_RS09270 PF00860 Permease family SH06_RS09275 PF01613 Flavin reductase like domain SH06_RS09280 PF00881 Nitroreductase family SH06_RS09285 PF12697 Alpha/beta hydrolase family SH06_RS09290 PF01042 Endoribonuclease L-PSP SH06_RS09295 PF00857 Isochorismatase family SH06_RS09300 PF00296 Luciferase-like monooxygenase SH06_RS09305 PF08362 YcdC-like protein, C-terminal region SH06_RS09305 PF00440 Bacterial regulatory proteins, tetR family SH06_RS09310 PF18327 Proline utilization A proline dehydrogenase N-terminal domain SH06_RS09310 PF14850 DNA-binding domain of Proline dehydrogenase SH06_RS09310 PF01619 Proline dehydrogenase SH06_RS09310 PF00171 Aldehyde dehydrogenase family SH06_RS09320 PF00474 Sodium:solute symporter family SH06_RS09335 PF09375 Imelysin SH06_RS09335 PF13473 Cupredoxin-like domain SH06_RS09340 PF04261 Dyp-type peroxidase family SH06_RS09350 PF02562 PhoH-like protein SH06_RS09355 PF13994 PgaD-like protein SH06_RS09360 PF00535 Glycosyl transferase family 2 SH06_RS09365 PF01522 Polysaccharide deacetylase SH06_RS09365 PF14883 Hypothetical glycosyl hydrolase family 13 SH06_RS09375 PF17158 Membrane-associated sensor, integral membrane domain SH06_RS09375 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS09380 PF13333 Integrase core domain SH06_RS09380 PF00665 Integrase core domain SH06_RS09380 PF13276 HTH-like domain SH06_RS09385 PF01527 Transposase SH06_RS09410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH06_RS09415 PF02811 PHP domain SH06_RS09420 PF02613 Nitrate reductase delta subunit SH06_RS09425 PF06496 Protein of unknown function (DUF1097) SH06_RS09430 PF03783 Curli production assembly/transport component CsgG SH06_RS09435 PF10614 Type VIII secretion system (T8SS), CsgF protein SH06_RS09440 PF10627 Curli assembly protein CsgE SH06_RS09445 PF00196 Bacterial regulatory proteins, luxR family SH06_RS09455 PF07012 Curlin associated repeat SH06_RS09460 PF07012 Curlin associated repeat SH06_RS09465 PF10610 Thin aggregative fimbriae synthesis protein SH06_RS09475 PF01661 Macro domain SH06_RS09480 PF13091 PLD-like domain SH06_RS09485 PF01757 Acyltransferase family SH06_RS09500 PF04349 Periplasmic glucan biosynthesis protein, MdoG SH06_RS09505 PF00535 Glycosyl transferase family 2 SH06_RS09510 PF07119 Protein of unknown function (DUF1375) SH06_RS09515 PF13984 MsyB protein SH06_RS09525 PF07690 Major Facilitator Superfamily SH06_RS09530 PF03279 Bacterial lipid A biosynthesis acyltransferase SH06_RS09535 PF17773 UPF0176 acylphosphatase like domain SH06_RS09535 PF12368 Rhodanase C-terminal SH06_RS09535 PF00581 Rhodanese-like domain SH06_RS09540 PF04264 YceI-like domain SH06_RS09545 PF01292 Prokaryotic cytochrome b561 SH06_RS09550 PF10968 Protein of unknown function (DUF2770) SH06_RS09555 PF01266 FAD dependent oxidoreductase SH06_RS09560 PF13991 BssS protein family SH06_RS09565 PF06183 DinI-like family SH06_RS09570 PF01979 Amidohydrolase family SH06_RS09575 PF07273 Protein of unknown function (DUF1439) SH06_RS09580 PF13417 Glutathione S-transferase, N-terminal domain SH06_RS09580 PF04399 Glutaredoxin 2, C terminal domain SH06_RS09585 PF07690 Major Facilitator Superfamily SH06_RS09590 PF13302 Acetyltransferase (GNAT) domain SH06_RS09595 PF04337 Protein of unknown function, DUF480 SH06_RS09600 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH06_RS09605 PF03023 Lipid II flippase MurJ SH06_RS09610 PF05130 FlgN protein SH06_RS09615 PF04316 Anti-sigma-28 factor, FlgM SH06_RS09620 PF13144 Chaperone for flagella basal body P-ring formation SH06_RS09625 PF00460 Flagella basal body rod protein SH06_RS09630 PF00460 Flagella basal body rod protein SH06_RS09630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH06_RS09635 PF13860 FlgD Ig-like domain SH06_RS09635 PF13861 FlgD Tudor-like domain SH06_RS09635 PF03963 Flagellar hook capping protein - N-terminal region SH06_RS09640 PF07559 Flagellar basal body protein FlaE SH06_RS09640 PF00460 Flagella basal body rod protein SH06_RS09640 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH06_RS09645 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH06_RS09645 PF00460 Flagella basal body rod protein SH06_RS09650 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH06_RS09650 PF00460 Flagella basal body rod protein SH06_RS09655 PF02107 Flagellar L-ring protein SH06_RS09660 PF02119 Flagellar P-ring protein SH06_RS09665 PF10135 Rod binding protein SH06_RS09665 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH06_RS09670 PF00460 Flagella basal body rod protein SH06_RS09670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH06_RS09675 PF00669 Bacterial flagellin N-terminal helical region SH06_RS09680 PF12111 Polyribonucleotide phosphorylase C terminal SH06_RS09680 PF10150 Ribonuclease E/G family SH06_RS09680 PF00575 S1 RNA binding domain SH06_RS09690 PF00849 RNA pseudouridylate synthase SH06_RS09690 PF01479 S4 domain SH06_RS09695 PF02545 Maf-like protein SH06_RS09700 PF02620 Large ribosomal RNA subunit accumulation protein YceD SH06_RS09705 PF01783 Ribosomal L32p protein family SH06_RS09710 PF02504 Fatty acid synthesis protein SH06_RS09715 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SH06_RS09715 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SH06_RS09720 PF00698 Acyl transferase domain SH06_RS09730 PF00550 Phosphopantetheine attachment site SH06_RS09735 PF00109 Beta-ketoacyl synthase, N-terminal domain SH06_RS09735 PF02801 Beta-ketoacyl synthase, C-terminal domain SH06_RS09740 PF01063 Amino-transferase class IV SH06_RS09745 PF02618 YceG-like family SH06_RS09750 PF02223 Thymidylate kinase SH06_RS09755 PF09115 DNA polymerase III, delta subunit, C terminal SH06_RS09760 PF01026 TatD related DNase SH06_RS09765 PF00367 phosphotransferase system, EIIB SH06_RS09765 PF02378 Phosphotransferase system, EIIC SH06_RS09770 PF00593 TonB dependent receptor SH06_RS09770 PF07715 TonB-dependent Receptor Plug Domain SH06_RS09775 PF01230 HIT domain SH06_RS09780 PF07233 Protein of unknown function (DUF1425) SH06_RS09785 PF13036 Peptidoglycan-synthase activator LpoB SH06_RS09790 PF01636 Phosphotransferase enzyme family SH06_RS09795 PF00933 Glycosyl hydrolase family 3 N terminal domain SH06_RS09800 PF05728 Uncharacterised protein family (UPF0227) SH06_RS09805 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH06_RS09810 PF05433 Glycine zipper 2TM domain SH06_RS09815 PF00440 Bacterial regulatory proteins, tetR family SH06_RS09820 PF07338 Protein of unknown function (DUF1471) SH06_RS09825 PF03734 L,D-transpeptidase catalytic domain SH06_RS09825 PF17969 L,D-transpeptidase C-terminal domain SH06_RS09825 PF01476 LysM domain SH06_RS09830 PF00270 DEAD/DEAH box helicase SH06_RS09830 PF02559 CarD-like/TRCF domain SH06_RS09830 PF03461 TRCF domain SH06_RS09830 PF17757 UvrB interaction domain SH06_RS09830 PF00271 Helicase conserved C-terminal domain SH06_RS09835 PF01757 Acyltransferase family SH06_RS09840 PF02687 FtsX-like permease family SH06_RS09840 PF12704 MacB-like periplasmic core domain SH06_RS09845 PF00005 ABC transporter SH06_RS09850 PF12704 MacB-like periplasmic core domain SH06_RS09850 PF02687 FtsX-like permease family SH06_RS09855 PF00480 ROK family SH06_RS09860 PF02146 Sir2 family SH06_RS09865 PF04536 TPM domain SH06_RS09870 PF12158 Protein of unknown function (DUF3592) SH06_RS09875 PF13416 Bacterial extracellular solute-binding protein SH06_RS09880 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS09885 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS09890 PF00005 ABC transporter SH06_RS09890 PF08402 TOBE domain SH06_RS09900 PF01546 Peptidase family M20/M25/M40 SH06_RS09900 PF07687 Peptidase dimerisation domain SH06_RS09905 PF08007 Cupin superfamily protein SH06_RS09910 PF08918 PhoQ Sensor SH06_RS09910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS09915 PF00486 Transcriptional regulatory protein, C terminal SH06_RS09915 PF00072 Response regulator receiver domain SH06_RS09920 PF08328 Adenylosuccinate lyase C-terminal SH06_RS09920 PF00206 Lyase SH06_RS09925 PF04356 Protein of unknown function (DUF489) SH06_RS09935 PF00293 NUDIX domain SH06_RS09940 PF00849 RNA pseudouridylate synthase SH06_RS09945 PF00180 Isocitrate/isopropylmalate dehydrogenase SH06_RS09960 PF07166 Protein of unknown function (DUF1398) SH06_RS09965 PF13411 MerR HTH family regulatory protein SH06_RS09970 PF00563 EAL domain SH06_RS09970 PF04940 Sensors of blue-light using FAD SH06_RS09975 PF10798 Biofilm development protein YmgB/AriR SH06_RS09985 PF10798 Biofilm development protein YmgB/AriR SH06_RS09995 PF12792 CSS motif domain associated with EAL SH06_RS09995 PF00563 EAL domain SH06_RS10020 PF16456 YmgD protein SH06_RS10025 PF13436 Glycine-zipper domain SH06_RS10040 PF03776 Septum formation topological specificity factor MinE SH06_RS10045 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SH06_RS10050 PF03775 Septum formation inhibitor MinC, C-terminal domain SH06_RS10050 PF05209 Septum formation inhibitor MinC, N-terminal domain SH06_RS10055 PF05666 Fels-1 Prophage Protein-like SH06_RS10060 PF04151 Bacterial pre-peptidase C-terminal domain SH06_RS10070 PF05166 YcgL domain SH06_RS10075 PF01557 Fumarylacetoacetate (FAA) hydrolase family SH06_RS10080 PF03692 Putative zinc- or iron-chelating domain SH06_RS10085 PF06109 Haemolysin E (HlyE) SH06_RS10090 PF00717 Peptidase S24-like SH06_RS10095 PF13438 Domain of unknown function (DUF4113) SH06_RS10095 PF00817 impB/mucB/samB family SH06_RS10095 PF11799 impB/mucB/samB family C-terminal domain SH06_RS10095 PF11798 IMS family HHH motif SH06_RS10100 PF02600 Disulfide bond formation protein DsbB SH06_RS10105 PF06450 Bacterial Na+/H+ antiporter B (NhaB) SH06_RS10110 PF00392 Bacterial regulatory proteins, gntR family SH06_RS10110 PF07840 FadR C-terminal domain SH06_RS10115 PF04293 SpoVR like protein SH06_RS10120 PF01266 FAD dependent oxidoreductase SH06_RS10125 PF01168 Alanine racemase, N-terminal domain SH06_RS10125 PF00842 Alanine racemase, C-terminal domain SH06_RS10130 PF03471 Transporter associated domain SH06_RS10130 PF00999 Sodium/hydrogen exchanger family SH06_RS10130 PF02080 TrkA-C domain SH06_RS10135 PF17676 LD-carboxypeptidase C-terminal domain SH06_RS10135 PF02016 LD-carboxypeptidase N-terminal domain SH06_RS10140 PF01464 Transglycosylase SLT domain SH06_RS10145 PF07238 PilZ domain SH06_RS10145 PF07317 Flagellar regulator YcgR SH06_RS10150 PF04226 Transglycosylase associated protein SH06_RS10160 PF01204 Trehalase SH06_RS10165 PF05524 PEP-utilising enzyme, N-terminal SH06_RS10165 PF00381 PTS HPr component phosphorylation site SH06_RS10165 PF00391 PEP-utilising enzyme, mobile domain SH06_RS10165 PF03610 PTS system fructose IIA component SH06_RS10170 PF02734 DAK2 domain SH06_RS10175 PF02733 Dak1 domain SH06_RS10180 PF00158 Sigma-54 interaction domain SH06_RS10180 PF00989 PAS fold SH06_RS10180 PF02954 Bacterial regulatory protein, Fis family SH06_RS10185 PF03212 Pertactin SH06_RS10185 PF03797 Autotransporter beta-domain SH06_RS10195 PF06071 Protein of unknown function (DUF933) SH06_RS10195 PF01926 50S ribosome-binding GTPase SH06_RS10200 PF01195 Peptidyl-tRNA hydrolase SH06_RS10205 PF10762 Protein of unknown function (DUF2583) SH06_RS10210 PF00916 Sulfate permease family SH06_RS10210 PF01740 STAS domain SH06_RS10215 PF14572 Phosphoribosyl synthetase-associated domain SH06_RS10215 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SH06_RS10220 PF08544 GHMP kinases C terminal SH06_RS10220 PF00288 GHMP kinases N terminal domain SH06_RS10225 PF03550 Outer membrane lipoprotein LolB SH06_RS10230 PF01488 Shikimate / quinate 5-dehydrogenase SH06_RS10230 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SH06_RS10230 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SH06_RS10235 PF03462 PCRF domain SH06_RS10235 PF00472 RF-1 domain SH06_RS10240 PF17827 PrmC N-terminal domain SH06_RS10240 PF13847 Methyltransferase domain SH06_RS10245 PF04247 Invasion gene expression up-regulator, SirB SH06_RS10250 PF13369 Transglutaminase-like superfamily SH06_RS10255 PF00793 DAHP synthetase I family SH06_RS10260 PF13940 Toxin Ldr, type I toxin-antitoxin system SH06_RS10265 PF13940 Toxin Ldr, type I toxin-antitoxin system SH06_RS10270 PF01699 Sodium/calcium exchanger protein SH06_RS10275 PF06150 ChaB SH06_RS10280 PF04752 ChaC-like protein SH06_RS10285 PF02635 DsrE/DsrF-like family SH06_RS10290 PF11924 Inverse autotransporter, beta-domain SH06_RS10295 PF00072 Response regulator receiver domain SH06_RS10295 PF00196 Bacterial regulatory proteins, luxR family SH06_RS10300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS10300 PF07730 Histidine kinase SH06_RS10300 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SH06_RS10300 PF00672 HAMP domain SH06_RS10310 PF07690 Major Facilitator Superfamily SH06_RS10315 PF01568 Molydopterin dinucleotide binding domain SH06_RS10315 PF00384 Molybdopterin oxidoreductase SH06_RS10315 PF14710 Respiratory nitrate reductase alpha N-terminal SH06_RS10320 PF14711 Respiratory nitrate reductase beta C-terminal SH06_RS10320 PF13247 4Fe-4S dicluster domain SH06_RS10325 PF02613 Nitrate reductase delta subunit SH06_RS10330 PF02665 Nitrate reductase gamma subunit SH06_RS10350 PF00551 Formyl transferase SH06_RS10350 PF01842 ACT domain SH06_RS10355 PF02810 SEC-C motif SH06_RS10360 PF01734 Patatin-like phospholipase SH06_RS10365 PF00072 Response regulator receiver domain SH06_RS10370 PF00483 Nucleotidyl transferase SH06_RS10375 PF00816 H-NS histone family SH06_RS10380 PF00265 Thymidine kinase SH06_RS10385 PF13006 Insertion element 4 transposase N-terminal SH06_RS10385 PF01609 Transposase DDE domain SH06_RS10395 PF00465 Iron-containing alcohol dehydrogenase SH06_RS10395 PF00171 Aldehyde dehydrogenase family SH06_RS10400 PF01914 MarC family integral membrane protein SH06_RS10405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH06_RS10410 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS10415 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS10415 PF12911 N-terminal TM domain of oligopeptide transport permease C SH06_RS10420 PF00005 ABC transporter SH06_RS10420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH06_RS10425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH06_RS10425 PF00005 ABC transporter SH06_RS10430 PF04269 Protein of unknown function, DUF440 SH06_RS10435 PF13396 Phospholipase_D-nuclease N-terminal SH06_RS10435 PF13091 PLD-like domain SH06_RS10445 PF07885 Ion channel SH06_RS10445 PF02254 TrkA-N domain SH06_RS10450 PF03795 YCII-related domain SH06_RS10455 PF03544 Gram-negative bacterial TonB protein C-terminal SH06_RS10460 PF03061 Thioesterase superfamily SH06_RS10465 PF04279 Intracellular septation protein A SH06_RS10475 PF03922 OmpW family SH06_RS10480 PF05974 Domain of unknown function (DUF892) SH06_RS10485 PF05974 Domain of unknown function (DUF892) SH06_RS10490 PF10685 Stress-induced bacterial acidophilic repeat motif SH06_RS10495 PF00290 Tryptophan synthase alpha chain SH06_RS10500 PF00291 Pyridoxal-phosphate dependent enzyme SH06_RS10505 PF00218 Indole-3-glycerol phosphate synthase SH06_RS10505 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SH06_RS10510 PF00591 Glycosyl transferase family, a/b domain SH06_RS10510 PF02885 Glycosyl transferase family, helical bundle domain SH06_RS10510 PF00117 Glutamine amidotransferase class-I SH06_RS10515 PF00425 chorismate binding enzyme SH06_RS10515 PF04715 Anthranilate synthase component I, N terminal region SH06_RS10520 PF02811 PHP domain SH06_RS10525 PF01300 Telomere recombination SH06_RS10530 PF09972 Predicted membrane protein (DUF2207) SH06_RS10535 PF01479 S4 domain SH06_RS10535 PF00849 RNA pseudouridylate synthase SH06_RS10540 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP SH06_RS10540 PF12557 Cob(I)alamin adenosyltransferase N terminal SH06_RS10545 PF00106 short chain dehydrogenase SH06_RS10555 PF08496 Peptidase family S49 N-terminal SH06_RS10555 PF01343 Peptidase family S49 SH06_RS10560 PF10692 Protein of unknown function (DUF2498) SH06_RS10570 PF08272 Topoisomerase I zinc-ribbon-like SH06_RS10570 PF01396 Topoisomerase DNA binding C4 zinc finger SH06_RS10570 PF01751 Toprim domain SH06_RS10570 PF01131 DNA topoisomerase SH06_RS10575 PF03466 LysR substrate binding domain SH06_RS10575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS10595 PF00694 Aconitase C-terminal domain SH06_RS10595 PF00330 Aconitase family (aconitate hydratase) SH06_RS10600 PF00925 GTP cyclohydrolase II SH06_RS10605 PF01569 PAP2 superfamily SH06_RS10610 PF06305 Lipopolysaccharide assembly protein A domain SH06_RS10615 PF18073 Rubredoxin metal binding domain SH06_RS10620 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH06_RS10625 PF01253 Translation initiation factor SUI1 SH06_RS10630 PF05433 Glycine zipper 2TM domain SH06_RS10635 PF00455 DeoR C terminal sensor domain SH06_RS10635 PF08220 DeoR-like helix-turn-helix domain SH06_RS10645 PF00563 EAL domain SH06_RS10645 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS10645 PF13426 PAS domain SH06_RS10655 PF17876 Cold shock domain SH06_RS10655 PF00773 RNB domain SH06_RS10655 PF08206 Ribonuclease B OB domain SH06_RS10655 PF00575 S1 RNA binding domain SH06_RS10670 PF04480 Protein of unknown function (DUF559) SH06_RS10675 PF00005 ABC transporter SH06_RS10680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH06_RS10680 PF00005 ABC transporter SH06_RS10685 PF12911 N-terminal TM domain of oligopeptide transport permease C SH06_RS10685 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS10690 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS10695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH06_RS10705 PF10820 Protein of unknown function (DUF2543) SH06_RS10710 PF00324 Amino acid permease SH06_RS10715 PF00120 Glutamine synthetase, catalytic domain SH06_RS10720 PF07722 Peptidase C26 SH06_RS10725 PF07883 Cupin domain SH06_RS10725 PF01381 Helix-turn-helix SH06_RS10730 PF00171 Aldehyde dehydrogenase family SH06_RS10735 PF01266 FAD dependent oxidoreductase SH06_RS10740 PF00202 Aminotransferase class-III SH06_RS10745 PF02954 Bacterial regulatory protein, Fis family SH06_RS10745 PF00158 Sigma-54 interaction domain SH06_RS10750 PF04012 PspA/IM30 family SH06_RS10755 PF06667 Phage shock protein B SH06_RS10760 PF04024 PspC domain SH06_RS10765 PF09584 Phage shock protein PspD (Phageshock_PspD) SH06_RS10770 PF00581 Rhodanese-like domain SH06_RS10775 PF00128 Alpha amylase, catalytic domain SH06_RS10780 PF01547 Bacterial extracellular solute-binding protein SH06_RS10785 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS10790 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS10795 PF00107 Zinc-binding dehydrogenase SH06_RS10800 PF01261 Xylose isomerase-like TIM barrel SH06_RS10805 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH06_RS10805 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH06_RS10810 PF03632 Glycosyl hydrolase family 65 central catalytic domain SH06_RS10810 PF03633 Glycosyl hydrolase family 65, C-terminal domain SH06_RS10810 PF03636 Glycosyl hydrolase family 65, N-terminal domain SH06_RS10815 PF13419 Haloacid dehalogenase-like hydrolase SH06_RS10825 PF09381 Outer membrane protein G (OmpG) SH06_RS10830 PF00356 Bacterial regulatory proteins, lacI family SH06_RS10830 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH06_RS10835 PF04317 YcjX-like family, DUF463 SH06_RS10840 PF05128 Domain of unknown function (DUF697) SH06_RS10845 PF00158 Sigma-54 interaction domain SH06_RS10845 PF13188 PAS domain SH06_RS10845 PF18024 Helix-turn-helix domain SH06_RS10850 PF08534 Redoxin SH06_RS10855 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH06_RS10855 PF13378 Enolase C-terminal domain-like SH06_RS10860 PF00246 Zinc carboxypeptidase SH06_RS10870 PF12146 Serine aminopeptidase, S33 SH06_RS10875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS10875 PF03466 LysR substrate binding domain SH06_RS10885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH06_RS10890 PF00924 Mechanosensitive ion channel SH06_RS10895 PF01609 Transposase DDE domain SH06_RS10895 PF05598 Transposase domain (DUF772) SH06_RS10900 PF10749 Protein of unknown function (DUF2534) SH06_RS10905 PF00582 Universal stress protein family SH06_RS10910 PF00027 Cyclic nucleotide-binding domain SH06_RS10910 PF00325 Bacterial regulatory proteins, crp family SH06_RS10915 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SH06_RS10915 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH06_RS10920 PF03806 AbgT putative transporter family SH06_RS10930 PF01546 Peptidase family M20/M25/M40 SH06_RS10935 PF01546 Peptidase family M20/M25/M40 SH06_RS10935 PF07687 Peptidase dimerisation domain SH06_RS10940 PF03466 LysR substrate binding domain SH06_RS10940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS10950 PF01713 Smr domain SH06_RS10955 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS10955 PF08448 PAS fold SH06_RS10960 PF01544 CorA-like Mg2+ transporter protein SH06_RS10970 PF00270 DEAD/DEAH box helicase SH06_RS10970 PF00271 Helicase conserved C-terminal domain SH06_RS10970 PF03880 DbpA RNA binding domain SH06_RS10975 PF01171 PP-loop family SH06_RS10980 PF00589 Phage integrase family SH06_RS10980 PF12167 Arm DNA-binding domain SH06_RS10985 PF06806 Putative excisionase (DUF1233) SH06_RS10990 PF06688 Protein of unknown function (DUF1187) SH06_RS11000 PF03837 RecT family SH06_RS11005 PF12684 PDDEXK-like domain of unknown function (DUF3799) SH06_RS11005 PF06630 Enterobacterial exodeoxyribonuclease VIII SH06_RS11015 PF04181 Rtr1/RPAP2 family SH06_RS11025 PF14163 Super-infection exclusion protein B SH06_RS11035 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT SH06_RS11040 PF06254 Putative bacterial toxin ydaT SH06_RS11045 PF07120 Protein of unknown function (DUF1376) SH06_RS11050 PF01695 IstB-like ATP binding protein SH06_RS11055 PF07789 Protein of unknown function (DUF1627) SH06_RS11060 PF03245 Bacteriophage Rz lysis protein SH06_RS11065 PF02386 Cation transport protein SH06_RS11070 PF02195 ParB-like nuclease domain SH06_RS11085 PF06791 Prophage tail length tape measure protein SH06_RS11090 PF06316 Enterobacterial Ail/Lom protein SH06_RS11095 PF01609 Transposase DDE domain SH06_RS11095 PF05598 Transposase domain (DUF772) SH06_RS11100 PF13505 Outer membrane protein beta-barrel domain SH06_RS11115 PF03335 Phage tail fibre repeat SH06_RS11115 PF07484 Phage Tail Collar Domain SH06_RS11115 PF08400 Prophage tail fibre N-terminal SH06_RS11120 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH06_RS11125 PF02796 Helix-turn-helix domain of resolvase SH06_RS11125 PF00239 Resolvase, N terminal domain SH06_RS11135 PF00582 Universal stress protein family SH06_RS11140 PF00267 Gram-negative porin SH06_RS11145 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SH06_RS11145 PF10371 Domain of unknown function SH06_RS11145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH06_RS11145 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SH06_RS11145 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SH06_RS11150 PF03891 Domain of unknown function (DUF333) SH06_RS11155 PF03724 META domain SH06_RS11160 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH06_RS11160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH06_RS11165 PF11739 Dicarboxylate transport SH06_RS11170 PF13617 YnbE-like lipoprotein SH06_RS11175 PF07027 Protein of unknown function (DUF1318) SH06_RS11180 PF12833 Helix-turn-helix domain SH06_RS11180 PF14525 AraC-binding-like domain SH06_RS11185 PF00171 Aldehyde dehydrogenase family SH06_RS11190 PF02728 Copper amine oxidase, N3 domain SH06_RS11190 PF01179 Copper amine oxidase, enzyme domain SH06_RS11190 PF07833 Copper amine oxidase N-terminal domain SH06_RS11190 PF02727 Copper amine oxidase, N2 domain SH06_RS11195 PF00171 Aldehyde dehydrogenase family SH06_RS11195 PF01575 MaoC like domain SH06_RS11200 PF05138 Phenylacetic acid catabolic protein SH06_RS11205 PF06243 Phenylacetic acid degradation B SH06_RS11210 PF05138 Phenylacetic acid catabolic protein SH06_RS11215 PF01883 Iron-sulfur cluster assembly protein SH06_RS11220 PF00175 Oxidoreductase NAD-binding domain SH06_RS11220 PF00970 Oxidoreductase FAD-binding domain SH06_RS11220 PF00111 2Fe-2S iron-sulfur cluster binding domain SH06_RS11225 PF00378 Enoyl-CoA hydratase/isomerase SH06_RS11230 PF00378 Enoyl-CoA hydratase/isomerase SH06_RS11235 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH06_RS11235 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH06_RS11235 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain SH06_RS11240 PF03061 Thioesterase superfamily SH06_RS11245 PF02803 Thiolase, C-terminal domain SH06_RS11245 PF00108 Thiolase, N-terminal domain SH06_RS11250 PF00501 AMP-binding enzyme SH06_RS11250 PF14535 AMP-binding enzyme C-terminal domain SH06_RS11255 PF07848 PaaX-like protein SH06_RS11255 PF08223 PaaX-like protein C-terminal domain SH06_RS11260 PF00132 Bacterial transferase hexapeptide (six repeats) SH06_RS11270 PF13276 HTH-like domain SH06_RS11270 PF00665 Integrase core domain SH06_RS11275 PF01527 Transposase SH06_RS11280 PF00665 Integrase core domain SH06_RS11280 PF13936 Helix-turn-helix domain SH06_RS11290 PF00248 Aldo/keto reductase family SH06_RS11295 PF10971 Protein of unknown function (DUF2773) SH06_RS11300 PF01066 CDP-alcohol phosphatidyltransferase SH06_RS11310 PF12146 Serine aminopeptidase, S33 SH06_RS11310 PF12147 Putative methyltransferase SH06_RS11315 PF00782 Dual specificity phosphatase, catalytic domain SH06_RS11320 PF02525 Flavodoxin-like fold SH06_RS11325 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold SH06_RS11325 PF11898 Domain of unknown function (DUF3418) SH06_RS11325 PF00270 DEAD/DEAH box helicase SH06_RS11325 PF00271 Helicase conserved C-terminal domain SH06_RS11325 PF04408 Helicase associated domain (HA2) SH06_RS11330 PF02698 DUF218 domain SH06_RS11335 PF00171 Aldehyde dehydrogenase family SH06_RS11340 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH06_RS11340 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH06_RS11345 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH06_RS11345 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH06_RS11350 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH06_RS11350 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH06_RS11355 PF01292 Prokaryotic cytochrome b561 SH06_RS11365 PF01848 Hok/gef family SH06_RS11370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH06_RS11370 PF00672 HAMP domain SH06_RS11370 PF02203 Tar ligand binding domain homologue SH06_RS11375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS11375 PF03466 LysR substrate binding domain SH06_RS11380 PF07063 Domain of unknown function (DUF1338) SH06_RS11385 PF04349 Periplasmic glucan biosynthesis protein, MdoG SH06_RS11395 PF04325 Protein of unknown function (DUF465) SH06_RS11400 PF13302 Acetyltransferase (GNAT) domain SH06_RS11405 PF18836 Beta solenoid repeat from YDCK SH06_RS11410 PF03595 Voltage-dependent anion channel SH06_RS11415 PF03848 Tellurite resistance protein TehB SH06_RS11420 PF11769 Protein of unknown function (DUF3313) SH06_RS11430 PF01797 Transposase IS200 like SH06_RS11435 PF01385 Probable transposase SH06_RS11435 PF07282 Putative transposase DNA-binding domain SH06_RS11435 PF12323 Helix-turn-helix domain SH06_RS11440 PF03594 Benzoate membrane transport protein SH06_RS11445 PF01381 Helix-turn-helix SH06_RS11445 PF07883 Cupin domain SH06_RS11450 PF12392 Collagenase SH06_RS11450 PF01136 Peptidase family U32 SH06_RS11455 PF10829 Protein of unknown function (DUF2554) SH06_RS11460 PF07927 HicA toxin of bacterial toxin-antitoxin, SH06_RS11465 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system SH06_RS11465 PF01381 Helix-turn-helix SH06_RS11470 PF00155 Aminotransferase class I and II SH06_RS11470 PF00392 Bacterial regulatory proteins, gntR family SH06_RS11475 PF13416 Bacterial extracellular solute-binding protein SH06_RS11480 PF00005 ABC transporter SH06_RS11480 PF08402 TOBE domain SH06_RS11485 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS11490 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS11495 PF00171 Aldehyde dehydrogenase family SH06_RS11505 PF10753 Toxin GhoT_OrtT SH06_RS11510 PF10735 Protein of unknown function (DUF2526) SH06_RS11515 PF04657 Putative inner membrane exporter, YdcZ SH06_RS11520 PF00583 Acetyltransferase (GNAT) family SH06_RS11525 PF16884 N-terminal domain of oxidoreductase SH06_RS11525 PF00107 Zinc-binding dehydrogenase SH06_RS11530 PF00392 Bacterial regulatory proteins, gntR family SH06_RS11530 PF07729 FCD domain SH06_RS11535 PF07715 TonB-dependent Receptor Plug Domain SH06_RS11535 PF00593 TonB dependent receptor SH06_RS11545 PF00324 Amino acid permease SH06_RS11550 PF13417 Glutathione S-transferase, N-terminal domain SH06_RS11555 PF17520 Family of unknown function (DUF5445) SH06_RS11560 PF03527 RHS protein SH06_RS11570 PF01609 Transposase DDE domain SH06_RS11570 PF13808 DDE_Tnp_1-associated SH06_RS11575 PF13808 DDE_Tnp_1-associated SH06_RS11575 PF01609 Transposase DDE domain SH06_RS11580 PF01361 Tautomerase enzyme SH06_RS11585 PF01613 Flavin reductase like domain SH06_RS11590 PF00797 N-acetyltransferase SH06_RS11595 PF02567 Phenazine biosynthesis-like protein SH06_RS11600 PF02665 Nitrate reductase gamma subunit SH06_RS11605 PF02613 Nitrate reductase delta subunit SH06_RS11610 PF13247 4Fe-4S dicluster domain SH06_RS11610 PF14711 Respiratory nitrate reductase beta C-terminal SH06_RS11615 PF00384 Molybdopterin oxidoreductase SH06_RS11615 PF01568 Molydopterin dinucleotide binding domain SH06_RS11615 PF14710 Respiratory nitrate reductase alpha N-terminal SH06_RS11620 PF07690 Major Facilitator Superfamily SH06_RS11630 PF00267 Gram-negative porin SH06_RS11635 PF00892 EamA-like transporter family SH06_RS11640 PF00384 Molybdopterin oxidoreductase SH06_RS11640 PF01568 Molydopterin dinucleotide binding domain SH06_RS11640 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS11645 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS11645 PF01568 Molydopterin dinucleotide binding domain SH06_RS11645 PF00384 Molybdopterin oxidoreductase SH06_RS11650 PF13247 4Fe-4S dicluster domain SH06_RS11650 PF12800 4Fe-4S binding domain SH06_RS11650 PF09163 Formate dehydrogenase N, transmembrane SH06_RS11655 PF01292 Prokaryotic cytochrome b561 SH06_RS11660 PF01381 Helix-turn-helix SH06_RS11665 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS11665 PF00107 Zinc-binding dehydrogenase SH06_RS11670 PF00390 Malic enzyme, N-terminal domain SH06_RS11670 PF03949 Malic enzyme, NAD binding domain SH06_RS11675 PF08136 30S ribosomal protein subunit S22 family SH06_RS11680 PF10684 Putative biofilm-dependent modulation protein SH06_RS11685 PF02566 OsmC-like protein SH06_RS11690 PF00005 ABC transporter SH06_RS11690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH06_RS11695 PF00005 ABC transporter SH06_RS11695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH06_RS11700 PF12911 N-terminal TM domain of oligopeptide transport permease C SH06_RS11700 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS11705 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS11710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH06_RS11715 PF01427 D-ala-D-ala dipeptidase SH06_RS11720 PF13426 PAS domain SH06_RS11720 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS11720 PF00563 EAL domain SH06_RS11725 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS11730 PF02638 Glycosyl hydrolase-like 10 SH06_RS11735 PF13520 Amino acid permease SH06_RS11740 PF00282 Pyridoxal-dependent decarboxylase conserved domain SH06_RS11750 PF00675 Insulinase (Peptidase family M16) SH06_RS11750 PF05193 Peptidase M16 inactive domain SH06_RS11755 PF07715 TonB-dependent Receptor Plug Domain SH06_RS11760 PF00005 ABC transporter SH06_RS11760 PF06472 ABC transporter transmembrane region 2 SH06_RS11765 PF04055 Radical SAM superfamily SH06_RS11765 PF13186 Iron-sulfur cluster-binding domain SH06_RS11770 PF00884 Sulfatase SH06_RS11775 PF12833 Helix-turn-helix domain SH06_RS11780 PF17073 Two-component-system connector protein SH06_RS11785 PF00384 Molybdopterin oxidoreductase SH06_RS11790 PF09160 FimH, mannose binding SH06_RS11795 PF00419 Fimbrial protein SH06_RS11800 PF00419 Fimbrial protein SH06_RS11805 PF13953 PapC C-terminal domain SH06_RS11805 PF00577 Outer membrane usher protein SH06_RS11815 PF07804 HipA-like C-terminal domain SH06_RS11815 PF13657 HipA N-terminal domain SH06_RS11820 PF01381 Helix-turn-helix SH06_RS11825 PF03797 Autotransporter beta-domain SH06_RS11830 PF13018 Extended Signal Peptide of Type V secretion system SH06_RS11835 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH06_RS11835 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH06_RS11840 PF04198 Putative sugar-binding domain SH06_RS11845 PF00005 ABC transporter SH06_RS11850 PF02653 Branched-chain amino acid transport system / permease component SH06_RS11855 PF02653 Branched-chain amino acid transport system / permease component SH06_RS11860 PF13407 Periplasmic binding protein domain SH06_RS11865 PF01791 DeoC/LacD family aldolase SH06_RS11870 PF03992 Antibiotic biosynthesis monooxygenase SH06_RS11875 PF13649 Methyltransferase domain SH06_RS11880 PF01062 Bestrophin, RFP-TM, chloride channel SH06_RS11890 PF01232 Mannitol dehydrogenase Rossmann domain SH06_RS11890 PF08125 Mannitol dehydrogenase C-terminal domain SH06_RS11895 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS11900 PF13811 Domain of unknown function (DUF4186) SH06_RS11905 PF04960 Glutaminase SH06_RS11910 PF00171 Aldehyde dehydrogenase family SH06_RS11915 PF03466 LysR substrate binding domain SH06_RS11915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS11925 PF07690 Major Facilitator Superfamily SH06_RS11930 PF01914 MarC family integral membrane protein SH06_RS11935 PF01047 MarR family SH06_RS11940 PF12833 Helix-turn-helix domain SH06_RS11945 PF13999 MarB protein SH06_RS11950 PF00892 EamA-like transporter family SH06_RS11955 PF07690 Major Facilitator Superfamily SH06_RS11965 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS11970 PF04076 Bacterial OB fold (BOF) protein SH06_RS11975 PF02464 Competence-damaged protein SH06_RS11980 PF01432 Peptidase family M3 SH06_RS11985 PF00106 short chain dehydrogenase SH06_RS11990 PF07729 FCD domain SH06_RS11990 PF00392 Bacterial regulatory proteins, gntR family SH06_RS11995 PF14001 YdfZ protein SH06_RS12000 PF08125 Mannitol dehydrogenase C-terminal domain SH06_RS12000 PF01232 Mannitol dehydrogenase Rossmann domain SH06_RS12005 PF00083 Sugar (and other) transporter SH06_RS12005 PF07690 Major Facilitator Superfamily SH06_RS12015 PF02796 Helix-turn-helix domain of resolvase SH06_RS12015 PF00239 Resolvase, N terminal domain SH06_RS12020 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH06_RS12025 PF03335 Phage tail fibre repeat SH06_RS12025 PF07484 Phage Tail Collar Domain SH06_RS12030 PF07471 Phage DNA packaging protein Nu1 SH06_RS12035 PF13132 Domain of unknown function (DUF3950) SH06_RS12040 PF07166 Protein of unknown function (DUF1398) SH06_RS12045 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system SH06_RS12055 PF00313 'Cold-shock' DNA-binding domain SH06_RS12060 PF10721 Protein of unknown function (DUF2514) SH06_RS12065 PF00959 Phage lysozyme SH06_RS12070 PF07041 Protein of unknown function (DUF1327) SH06_RS12075 PF04971 Bacteriophage P21 holin S SH06_RS12080 PF00313 'Cold-shock' DNA-binding domain SH06_RS12085 PF00313 'Cold-shock' DNA-binding domain SH06_RS12090 PF03589 Antitermination protein SH06_RS12095 PF06147 Protein of unknown function (DUF968) SH06_RS12110 PF01848 Hok/gef family SH06_RS12115 PF05016 ParE toxin of type II toxin-antitoxin system, parDE SH06_RS12120 PF04221 RelB antitoxin SH06_RS12125 PF14282 FlxA-like protein SH06_RS12140 PF01381 Helix-turn-helix SH06_RS12145 PF07151 Protein of unknown function (DUF1391) SH06_RS12160 PF05358 DicB protein SH06_RS12165 PF07358 Protein of unknown function (DUF1482) SH06_RS12180 PF00589 Phage integrase family SH06_RS12180 PF12167 Arm DNA-binding domain SH06_RS12185 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS12185 PF00107 Zinc-binding dehydrogenase SH06_RS12190 PF13378 Enolase C-terminal domain-like SH06_RS12190 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH06_RS12195 PF02694 Uncharacterised BCR, YnfA/UPF0060 family SH06_RS12200 PF06932 Protein of unknown function (DUF1283) SH06_RS12205 PF13302 Acetyltransferase (GNAT) domain SH06_RS12210 PF06788 Uncharacterised protein family (UPF0257) SH06_RS12215 PF06649 Protein of unknown function (DUF1161) SH06_RS12220 PF00384 Molybdopterin oxidoreductase SH06_RS12220 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS12220 PF01568 Molydopterin dinucleotide binding domain SH06_RS12225 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS12225 PF00384 Molybdopterin oxidoreductase SH06_RS12225 PF01568 Molydopterin dinucleotide binding domain SH06_RS12230 PF13247 4Fe-4S dicluster domain SH06_RS12230 PF12800 4Fe-4S binding domain SH06_RS12235 PF04976 DMSO reductase anchor subunit (DmsC) SH06_RS12240 PF02613 Nitrate reductase delta subunit SH06_RS12245 PF00654 Voltage gated chloride channel SH06_RS12255 PF00480 ROK family SH06_RS12260 PF03466 LysR substrate binding domain SH06_RS12260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS12265 PF07690 Major Facilitator Superfamily SH06_RS12280 PF00089 Trypsin SH06_RS12285 PF00893 Small Multidrug Resistance protein SH06_RS12290 PF00893 Small Multidrug Resistance protein SH06_RS12295 PF01594 AI-2E family transporter SH06_RS12300 PF02233 NAD(P) transhydrogenase beta subunit SH06_RS12305 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SH06_RS12305 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SH06_RS12305 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch SH06_RS12310 PF07338 Protein of unknown function (DUF1471) SH06_RS12315 PF13520 Amino acid permease SH06_RS12325 PF06942 GlpM protein SH06_RS12330 PF00486 Transcriptional regulatory protein, C terminal SH06_RS12330 PF00072 Response regulator receiver domain SH06_RS12335 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS12335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS12335 PF00672 HAMP domain SH06_RS12340 PF05472 DNA replication terminus site-binding protein (Ter protein) SH06_RS12345 PF10415 Fumarase C C-terminus SH06_RS12345 PF00206 Lyase SH06_RS12350 PF05681 Fumarate hydratase (Fumerase) SH06_RS12350 PF05683 Fumarase C-terminus SH06_RS12355 PF01238 Phosphomannose isomerase type I SH06_RS12360 PF06097 Bacterial protein of unknown function (DUF945) SH06_RS12365 PF03573 outer membrane porin, OprD family SH06_RS12375 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH06_RS12375 PF00703 Glycosyl hydrolases family 2 SH06_RS12375 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH06_RS12380 PF00440 Bacterial regulatory proteins, tetR family SH06_RS12390 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH06_RS12390 PF00356 Bacterial regulatory proteins, lacI family SH06_RS12395 PF02378 Phosphotransferase system, EIIC SH06_RS12395 PF00367 phosphotransferase system, EIIB SH06_RS12400 PF00155 Aminotransferase class I and II SH06_RS12405 PF00962 Adenosine/AMP deaminase SH06_RS12410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH06_RS12410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH06_RS12420 PF05321 Haemolysin expression modulating protein SH06_RS12425 PF10754 Protein of unknown function (DUF2569) SH06_RS12430 PF02508 Rnf-Nqr subunit, membrane protein SH06_RS12435 PF04060 Putative Fe-S cluster SH06_RS12440 PF10531 SLBB domain SH06_RS12440 PF13375 RnfC Barrel sandwich hybrid domain SH06_RS12440 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SH06_RS12440 PF12838 4Fe-4S dicluster domain SH06_RS12445 PF03116 NQR2, RnfD, RnfE family SH06_RS12450 PF04205 FMN-binding domain SH06_RS12455 PF02508 Rnf-Nqr subunit, membrane protein SH06_RS12460 PF00633 Helix-hairpin-helix motif SH06_RS12460 PF10576 Iron-sulfur binding domain of endonuclease III SH06_RS12460 PF00730 HhH-GPD superfamily base excision DNA repair protein SH06_RS12470 PF00854 POT family SH06_RS12475 PF02798 Glutathione S-transferase, N-terminal domain SH06_RS12475 PF00043 Glutathione S-transferase, C-terminal domain SH06_RS12480 PF08543 Phosphomethylpyrimidine kinase SH06_RS12485 PF01479 S4 domain SH06_RS12485 PF00579 tRNA synthetases class I (W and Y) SH06_RS12490 PF01243 Pyridoxamine 5'-phosphate oxidase SH06_RS12490 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region SH06_RS12495 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme SH06_RS12500 PF03702 Anhydro-N-acetylmuramic acid kinase SH06_RS12505 PF05433 Glycine zipper 2TM domain SH06_RS12510 PF01047 MarR family SH06_RS12515 PF07869 Protein of unknown function (DUF1656) SH06_RS12520 PF00529 HlyD membrane-fusion protein of T1SS SH06_RS12520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH06_RS12525 PF04632 Fusaric acid resistance protein family SH06_RS12530 PF00080 Copper/zinc superoxide dismutase (SODC) SH06_RS12535 PF00248 Aldo/keto reductase family SH06_RS12540 PF06945 Protein of unknown function (DUF1289) SH06_RS12545 PF00440 Bacterial regulatory proteins, tetR family SH06_RS12545 PF16925 Tetracyclin repressor-like, C-terminal domain SH06_RS12550 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SH06_RS12555 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH06_RS12560 PF00929 Exonuclease SH06_RS12565 PF00271 Helicase conserved C-terminal domain SH06_RS12565 PF08494 DEAD/H associated SH06_RS12565 PF00270 DEAD/DEAH box helicase SH06_RS12570 PF00462 Glutaredoxin SH06_RS12575 PF00877 NlpC/P60 family SH06_RS12580 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SH06_RS12580 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SH06_RS12585 PF07690 Major Facilitator Superfamily SH06_RS12595 PF00356 Bacterial regulatory proteins, lacI family SH06_RS12600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS12600 PF03466 LysR substrate binding domain SH06_RS12605 PF07690 Major Facilitator Superfamily SH06_RS12615 PF00677 Lumazine binding domain SH06_RS12620 PF01554 MatE SH06_RS12625 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH06_RS12625 PF03212 Pertactin SH06_RS12640 PF08803 Putative mono-oxygenase ydhR SH06_RS12645 PF13454 FAD-NAD(P)-binding SH06_RS12655 PF01292 Prokaryotic cytochrome b561 SH06_RS12660 PF13247 4Fe-4S dicluster domain SH06_RS12670 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 SH06_RS12670 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain SH06_RS12675 PF13247 4Fe-4S dicluster domain SH06_RS12675 PF12800 4Fe-4S binding domain SH06_RS12680 PF10965 Protein of unknown function (DUF2767) SH06_RS12685 PF02887 Pyruvate kinase, alpha/beta domain SH06_RS12685 PF00224 Pyruvate kinase, barrel domain SH06_RS12690 PF04728 Lipoprotein leucine-zipper SH06_RS12695 PF01476 LysM domain SH06_RS12695 PF03734 L,D-transpeptidase catalytic domain SH06_RS12695 PF17969 L,D-transpeptidase C-terminal domain SH06_RS12700 PF02657 Fe-S metabolism associated domain SH06_RS12705 PF00266 Aminotransferase class-V SH06_RS12710 PF01458 Uncharacterized protein family (UPF0051) SH06_RS12715 PF00005 ABC transporter SH06_RS12720 PF01458 Uncharacterized protein family (UPF0051) SH06_RS12725 PF01521 Iron-sulphur cluster biosynthesis SH06_RS12730 PF15930 Domain of unknown function SH06_RS12735 PF03061 Thioesterase superfamily SH06_RS12740 PF02913 FAD linked oxidases, C-terminal domain SH06_RS12740 PF01565 FAD binding domain SH06_RS12740 PF13183 4Fe-4S dicluster domain SH06_RS12745 PF01594 AI-2E family transporter SH06_RS12750 PF08965 Domain of unknown function (DUF1870) SH06_RS12755 PF07690 Major Facilitator Superfamily SH06_RS12760 PF07690 Major Facilitator Superfamily SH06_RS12765 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SH06_RS12765 PF08501 Shikimate dehydrogenase substrate binding domain SH06_RS12770 PF01487 Type I 3-dehydroquinase SH06_RS12775 PF01144 Coenzyme A transferase SH06_RS12780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH06_RS12780 PF02770 Acyl-CoA dehydrogenase, middle domain SH06_RS12780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH06_RS12785 PF12833 Helix-turn-helix domain SH06_RS12785 PF02311 AraC-like ligand binding domain SH06_RS12795 PF01012 Electron transfer flavoprotein domain SH06_RS12800 PF01012 Electron transfer flavoprotein domain SH06_RS12800 PF00766 Electron transfer flavoprotein FAD-binding domain SH06_RS12805 PF01494 FAD binding domain SH06_RS12815 PF13193 AMP-binding enzyme C-terminal domain SH06_RS12815 PF00501 AMP-binding enzyme SH06_RS12820 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SH06_RS12820 PF02896 PEP-utilising enzyme, TIM barrel domain SH06_RS12820 PF00391 PEP-utilising enzyme, mobile domain SH06_RS12830 PF03618 Kinase/pyrophosphorylase SH06_RS12835 PF00793 DAHP synthetase I family SH06_RS12840 PF10636 Hemin uptake protein hemP SH06_RS12845 PF02696 Uncharacterized ACR, YdiU/UPF0061 family SH06_RS12850 PF00563 EAL domain SH06_RS12855 PF00877 NlpC/P60 family SH06_RS12865 PF00255 Glutathione peroxidase SH06_RS12870 PF01032 FecCD transport family SH06_RS12875 PF00216 Bacterial DNA-binding protein SH06_RS12880 PF03147 Ferredoxin-fold anticodon binding domain SH06_RS12880 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SH06_RS12880 PF03484 tRNA synthetase B5 domain SH06_RS12880 PF01588 Putative tRNA binding domain SH06_RS12880 PF03483 B3/4 domain SH06_RS12885 PF01409 tRNA synthetases class II core domain (F) SH06_RS12885 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SH06_RS12895 PF00453 Ribosomal protein L20 SH06_RS12900 PF01632 Ribosomal protein L35 SH06_RS12905 PF05198 Translation initiation factor IF-3, N-terminal domain SH06_RS12905 PF00707 Translation initiation factor IF-3, C-terminal domain SH06_RS12910 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH06_RS12910 PF02824 TGS domain SH06_RS12910 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SH06_RS12910 PF03129 Anticodon binding domain SH06_RS12925 PF04338 Protein of unknown function, DUF481 SH06_RS12930 PF00294 pfkB family carbohydrate kinase SH06_RS12935 PF11080 Endoribonuclease GhoS SH06_RS12940 PF03881 Fructosamine kinase SH06_RS12945 PF14002 YniB-like protein SH06_RS12950 PF13419 Haloacid dehalogenase-like hydrolase SH06_RS12955 PF04307 LexA-binding, inner membrane-associated putative hydrolase SH06_RS12960 PF00375 Sodium:dicarboxylate symporter family SH06_RS12970 PF10729 Cell division activator CedA SH06_RS12975 PF18011 C-terminal domain found in long catalases SH06_RS12975 PF06628 Catalase-related immune-responsive SH06_RS12975 PF00199 Catalase SH06_RS12980 PF04794 YdjC-like protein SH06_RS12985 PF02056 Family 4 glycosyl hydrolase SH06_RS12985 PF11975 Family 4 glycosyl hydrolase C-terminal domain SH06_RS12990 PF12833 Helix-turn-helix domain SH06_RS12990 PF07883 Cupin domain SH06_RS12995 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SH06_RS13000 PF02378 Phosphotransferase system, EIIC SH06_RS13005 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH06_RS13010 PF04355 SmpA / OmlA family SH06_RS13015 PF02540 NAD synthase SH06_RS13030 PF05962 HutD SH06_RS13035 PF07813 LTXXQ motif family protein SH06_RS13040 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family SH06_RS13045 PF04996 Succinylarginine dihydrolase SH06_RS13050 PF00171 Aldehyde dehydrogenase family SH06_RS13055 PF04958 Arginine N-succinyltransferase beta subunit SH06_RS13060 PF00202 Aminotransferase class-III SH06_RS13065 PF03372 Endonuclease/Exonuclease/phosphatase family SH06_RS13070 PF09335 SNARE associated Golgi protein SH06_RS13080 PF09335 SNARE associated Golgi protein SH06_RS13085 PF02627 Carboxymuconolactone decarboxylase family SH06_RS13090 PF13416 Bacterial extracellular solute-binding protein SH06_RS13095 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS13100 PF00005 ABC transporter SH06_RS13105 PF00581 Rhodanese-like domain SH06_RS13110 PF01066 CDP-alcohol phosphatidyltransferase SH06_RS13115 PF00293 NUDIX domain SH06_RS13120 PF07383 Protein of unknown function (DUF1496) SH06_RS13125 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SH06_RS13125 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SH06_RS13130 PF06889 Protein of unknown function (DUF1266) SH06_RS13135 PF01131 DNA topoisomerase SH06_RS13135 PF01751 Toprim domain SH06_RS13140 PF02769 AIR synthase related protein, C-terminal domain SH06_RS13140 PF00586 AIR synthase related protein, N-terminal domain SH06_RS13150 PF00881 Nitroreductase family SH06_RS13160 PF01343 Peptidase family S49 SH06_RS13165 PF17763 Glutaminase/Asparaginase C-terminal domain SH06_RS13165 PF00710 Asparaginase, N-terminal SH06_RS13170 PF00857 Isochorismatase family SH06_RS13175 PF00083 Sugar (and other) transporter SH06_RS13180 PF08220 DeoR-like helix-turn-helix domain SH06_RS13180 PF00455 DeoR C terminal sensor domain SH06_RS13185 PF00248 Aldo/keto reductase family SH06_RS13190 PF00294 pfkB family carbohydrate kinase SH06_RS13195 PF01116 Fructose-bisphosphate aldolase class-II SH06_RS13200 PF00107 Zinc-binding dehydrogenase SH06_RS13200 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS13205 PF00083 Sugar (and other) transporter SH06_RS13210 PF00107 Zinc-binding dehydrogenase SH06_RS13210 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS13215 PF07023 Protein of unknown function (DUF1315) SH06_RS13220 PF01641 SelR domain SH06_RS13225 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH06_RS13225 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH06_RS13230 PF01263 Aldose 1-epimerase SH06_RS13235 PF00248 Aldo/keto reductase family SH06_RS13240 PF06629 MltA-interacting protein MipA SH06_RS13245 PF08298 PrkA AAA domain SH06_RS13245 PF06798 PrkA serine protein kinase C-terminal domain SH06_RS13250 PF04285 Protein of unknown function (DUF444) SH06_RS13255 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS13255 PF17158 Membrane-associated sensor, integral membrane domain SH06_RS13260 PF17155 Gammaproteobacterial periplasmic sensor domain SH06_RS13260 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS13265 PF04073 Aminoacyl-tRNA editing domain SH06_RS13275 PF04284 Protein of unknown function (DUF441) SH06_RS13280 PF12833 Helix-turn-helix domain SH06_RS13280 PF02311 AraC-like ligand binding domain SH06_RS13285 PF07690 Major Facilitator Superfamily SH06_RS13290 PF04343 Protein of unknown function, DUF488 SH06_RS13295 PF03891 Domain of unknown function (DUF333) SH06_RS13300 PF13185 GAF domain SH06_RS13300 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS13310 PF04226 Transglycosylase associated protein SH06_RS13315 PF08956 Domain of unknown function (DUF1869) SH06_RS13320 PF09313 Domain of unknown function (DUF1971) SH06_RS13325 PF01810 LysE type translocator SH06_RS13330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS13330 PF03466 LysR substrate binding domain SH06_RS13335 PF00180 Isocitrate/isopropylmalate dehydrogenase SH06_RS13340 PF02028 BCCT, betaine/carnitine/choline family transporter SH06_RS13345 PF00355 Rieske [2Fe-2S] domain SH06_RS13345 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SH06_RS13350 PF00175 Oxidoreductase NAD-binding domain SH06_RS13350 PF00970 Oxidoreductase FAD-binding domain SH06_RS13350 PF00111 2Fe-2S iron-sulfur cluster binding domain SH06_RS13355 PF01612 3'-5' exonuclease SH06_RS13355 PF00570 HRDC domain SH06_RS13360 PF13193 AMP-binding enzyme C-terminal domain SH06_RS13360 PF00501 AMP-binding enzyme SH06_RS13365 PF03843 Outer membrane lipoprotein Slp family SH06_RS13370 PF00814 Glycoprotease family SH06_RS13375 PF04851 Type III restriction enzyme, res subunit SH06_RS13375 PF13307 Helicase C-terminal domain SH06_RS13380 PF01042 Endoribonuclease L-PSP SH06_RS13385 PF08986 Domain of unknown function (DUF1889) SH06_RS13390 PF03701 Uncharacterised protein family (UPF0181) SH06_RS13395 PF00425 chorismate binding enzyme SH06_RS13395 PF04715 Anthranilate synthase component I, N terminal region SH06_RS13400 PF00293 NUDIX domain SH06_RS13405 PF03313 Serine dehydratase alpha chain SH06_RS13405 PF03315 Serine dehydratase beta chain SH06_RS13410 PF00563 EAL domain SH06_RS13410 PF12792 CSS motif domain associated with EAL SH06_RS13415 PF03471 Transporter associated domain SH06_RS13415 PF03741 Integral membrane protein TerC family SH06_RS13425 PF03610 PTS system fructose IIA component SH06_RS13425 PF03830 PTS system sorbose subfamily IIB component SH06_RS13430 PF03609 PTS system sorbose-specific iic component SH06_RS13435 PF03613 PTS system mannose/fructose/sorbose family IID component SH06_RS13440 PF06173 Protein of unknown function (DUF986) SH06_RS13450 PF02659 Putative manganese efflux pump SH06_RS13455 PF13847 Methyltransferase domain SH06_RS13460 PF00313 'Cold-shock' DNA-binding domain SH06_RS13465 PF10736 Protein of unknown function (DUF2627) SH06_RS13475 PF13974 YebO-like protein SH06_RS13480 PF13998 MgrB protein SH06_RS13485 PF13996 YobH-like protein SH06_RS13490 PF01614 Bacterial transcriptional regulator SH06_RS13490 PF09339 IclR helix-turn-helix domain SH06_RS13495 PF07690 Major Facilitator Superfamily SH06_RS13505 PF17804 Tail specific protease N-terminal domain SH06_RS13505 PF11818 C-terminal domain of tail specific protease (DUF3340) SH06_RS13505 PF00595 PDZ domain SH06_RS13505 PF03572 Peptidase family S41 SH06_RS13510 PF04352 ProQ/FINO family SH06_RS13510 PF17516 ProQ C-terminal domain SH06_RS13515 PF13185 GAF domain SH06_RS13520 PF04403 Paraquat-inducible protein A SH06_RS13525 PF02470 MlaD protein SH06_RS13535 PF07351 Protein of unknown function (DUF1480) SH06_RS13540 PF07358 Protein of unknown function (DUF1482) SH06_RS13545 PF00149 Calcineurin-like phosphoesterase SH06_RS13555 PF10709 Protein of unknown function (DUF2511) SH06_RS13560 PF05425 Copper resistance protein D SH06_RS13565 PF04234 CopC domain SH06_RS13570 PF06440 DNA polymerase III, theta subunit SH06_RS13575 PF00795 Carbon-nitrogen hydrolase SH06_RS13580 PF00929 Exonuclease SH06_RS13585 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain SH06_RS13585 PF00326 Prolyl oligopeptidase family SH06_RS13590 PF04391 Protein of unknown function (DUF533) SH06_RS13600 PF13995 YebF-like protein SH06_RS13605 PF07130 YebG protein SH06_RS13610 PF02222 ATP-grasp domain SH06_RS13615 PF01081 KDPG and KHG aldolase SH06_RS13620 PF00920 Dehydratase family SH06_RS13625 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SH06_RS13625 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SH06_RS13635 PF01380 SIS domain SH06_RS13635 PF01418 Helix-turn-helix domain, rpiR family SH06_RS13640 PF00224 Pyruvate kinase, barrel domain SH06_RS13640 PF02887 Pyruvate kinase, alpha/beta domain SH06_RS13645 PF03279 Bacterial lipid A biosynthesis acyltransferase SH06_RS13650 PF01551 Peptidase family M23 SH06_RS13650 PF08525 Opacity-associated protein A N-terminal motif SH06_RS13650 PF01476 LysM domain SH06_RS13655 PF01297 Zinc-uptake complex component A periplasmic SH06_RS13660 PF00005 ABC transporter SH06_RS13665 PF00950 ABC 3 transport family SH06_RS13670 PF05491 RuvB C-terminal winged helix domain SH06_RS13670 PF17864 RuvB AAA lid domain SH06_RS13670 PF05496 Holliday junction DNA helicase RuvB P-loop domain SH06_RS13675 PF07499 RuvA, C-terminal domain SH06_RS13675 PF01330 RuvA N terminal domain SH06_RS13680 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH06_RS13685 PF02075 Crossover junction endodeoxyribonuclease RuvC SH06_RS13690 PF01709 Transcriptional regulator SH06_RS13695 PF00293 NUDIX domain SH06_RS13700 PF01336 OB-fold nucleic acid binding domain SH06_RS13700 PF02938 GAD domain SH06_RS13700 PF00152 tRNA synthetases class II (D, K and N) SH06_RS13705 PF00857 Isochorismatase family SH06_RS13710 PF01904 Protein of unknown function DUF72 SH06_RS13715 PF01124 MAPEG family SH06_RS13720 PF13649 Methyltransferase domain SH06_RS13725 PF08003 Protein of unknown function (DUF1698) SH06_RS13730 PF01568 Molydopterin dinucleotide binding domain SH06_RS13730 PF18364 Molybdopterin oxidoreductase N-terminal domain SH06_RS13730 PF00384 Molybdopterin oxidoreductase SH06_RS13735 PF03264 NapC/NirT cytochrome c family, N-terminal region SH06_RS13740 PF03932 CutC family SH06_RS13745 PF06185 YecM protein SH06_RS13750 PF03485 Arginyl tRNA synthetase N terminal domain SH06_RS13750 PF05746 DALR anticodon binding domain SH06_RS13750 PF00750 tRNA synthetases class I (R) SH06_RS13755 PF07007 Lysozyme inhibitor LprI SH06_RS13760 PF06366 Flagellar protein FlhE SH06_RS13765 PF00771 FHIPEP family SH06_RS13770 PF01312 FlhB HrpN YscU SpaS Family SH06_RS13775 PF04344 Chemotaxis phosphatase, CheZ SH06_RS13780 PF00072 Response regulator receiver domain SH06_RS13785 PF00072 Response regulator receiver domain SH06_RS13785 PF01339 CheB methylesterase SH06_RS13790 PF01739 CheR methyltransferase, SAM binding domain SH06_RS13790 PF03705 CheR methyltransferase, all-alpha domain SH06_RS13795 PF02203 Tar ligand binding domain homologue SH06_RS13795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH06_RS13795 PF00672 HAMP domain SH06_RS13800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH06_RS13800 PF02203 Tar ligand binding domain homologue SH06_RS13800 PF00672 HAMP domain SH06_RS13805 PF01584 CheW-like domain SH06_RS13810 PF09078 CheY binding SH06_RS13810 PF01584 CheW-like domain SH06_RS13810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS13810 PF02895 Signal transducing histidine kinase, homodimeric domain SH06_RS13810 PF01627 Hpt domain SH06_RS13815 PF00691 OmpA family SH06_RS13815 PF13677 Membrane MotB of proton-channel complex MotA/MotB SH06_RS13820 PF01618 MotA/TolQ/ExbB proton channel family SH06_RS13825 PF05280 Flagellar transcriptional activator (FlhC) SH06_RS13830 PF05247 Flagellar transcriptional activator (FlhD) SH06_RS13835 PF00582 Universal stress protein family SH06_RS13840 PF00982 Glycosyltransferase family 20 SH06_RS13845 PF02358 Trehalose-phosphatase SH06_RS13850 PF02653 Branched-chain amino acid transport system / permease component SH06_RS13855 PF00005 ABC transporter SH06_RS13860 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH06_RS13865 PF00210 Ferritin-like domain SH06_RS13870 PF10964 Protein of unknown function (DUF2766) SH06_RS13880 PF13992 YecR-like lipoprotein SH06_RS13885 PF00210 Ferritin-like domain SH06_RS13890 PF10678 Protein of unknown function (DUF2492) SH06_RS13895 PF03222 Tryptophan/tyrosine permease family SH06_RS13900 PF03695 Uncharacterised protein family (UPF0149) SH06_RS13900 PF02810 SEC-C motif SH06_RS13920 PF01066 CDP-alcohol phosphatidyltransferase SH06_RS13925 PF01541 GIY-YIG catalytic domain SH06_RS13925 PF02151 UvrB/uvrC motif SH06_RS13925 PF08459 UvrC Helix-hairpin-helix N-terminal SH06_RS13930 PF00072 Response regulator receiver domain SH06_RS13930 PF00196 Bacterial regulatory proteins, luxR family SH06_RS13940 PF10769 Protein of unknown function (DUF2594) SH06_RS13945 PF03472 Autoinducer binding domain SH06_RS13945 PF00196 Bacterial regulatory proteins, luxR family SH06_RS13950 PF00005 ABC transporter SH06_RS13955 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS13960 PF00291 Pyridoxal-phosphate dependent enzyme SH06_RS13965 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH06_RS13970 PF02899 Phage integrase, N-terminal SAM-like domain SH06_RS13975 PF04542 Sigma-70 region 2 SH06_RS13975 PF04539 Sigma-70 region 3 SH06_RS13975 PF04545 Sigma-70, region 4 SH06_RS13980 PF00669 Bacterial flagellin N-terminal helical region SH06_RS13980 PF08884 Flagellin D3 domain SH06_RS13980 PF00700 Bacterial flagellin C-terminal helical region SH06_RS13985 PF07195 Flagellar hook-associated protein 2 C-terminus SH06_RS13985 PF02465 Flagellar hook-associated protein 2 N-terminus SH06_RS13990 PF02561 Flagellar protein FliS SH06_RS13995 PF05400 Flagellar protein FliT SH06_RS14000 PF00128 Alpha amylase, catalytic domain SH06_RS14000 PF02806 Alpha amylase, C-terminal all-beta domain SH06_RS14005 PF13987 YedD-like protein SH06_RS14010 PF04143 Sulphur transport SH06_RS14015 PF01206 Sulfurtransferase TusA SH06_RS14020 PF02586 SOS response associated peptidase (SRAP) SH06_RS14025 PF00583 Acetyltransferase (GNAT) family SH06_RS14045 PF02049 Flagellar hook-basal body complex protein FliE SH06_RS14050 PF08345 Flagellar M-ring protein C-terminal SH06_RS14050 PF01514 Secretory protein of YscJ/FliF family SH06_RS14055 PF14842 FliG N-terminal domain SH06_RS14055 PF14841 FliG middle domain SH06_RS14055 PF01706 FliG C-terminal domain SH06_RS14060 PF02108 Flagellar assembly protein FliH SH06_RS14065 PF18269 T3SS EscN ATPase C-terminal domain SH06_RS14065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH06_RS14070 PF02050 Flagellar FliJ protein SH06_RS14075 PF02120 Flagellar hook-length control protein FliK SH06_RS14080 PF03748 Flagellar basal body-associated protein FliL SH06_RS14085 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SH06_RS14085 PF02154 Flagellar motor switch protein FliM SH06_RS14090 PF16973 Flagellar motor switch protein FliN N-terminal SH06_RS14090 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SH06_RS14095 PF04347 Flagellar biosynthesis protein, FliO SH06_RS14100 PF00813 FliP family SH06_RS14105 PF01313 Bacterial export proteins, family 3 SH06_RS14110 PF01311 Bacterial export proteins, family 1 SH06_RS14115 PF00196 Bacterial regulatory proteins, luxR family SH06_RS14120 PF10781 Dextransucrase DSRB SH06_RS14125 PF10733 Protein of unknown function (DUF2525) SH06_RS14135 PF17151 Periplasmic sensor domain SH06_RS14135 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS14140 PF09926 Uncharacterized small protein (DUF2158) SH06_RS14145 PF05661 Protein of unknown function (DUF808) SH06_RS14150 PF00892 EamA-like transporter family SH06_RS14155 PF03852 DNA mismatch endonuclease Vsr SH06_RS14160 PF18284 DNA methylase N-terminal domain SH06_RS14160 PF00145 C-5 cytosine-specific DNA methylase SH06_RS14165 PF01966 HD domain SH06_RS14195 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS14195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS14200 PF00072 Response regulator receiver domain SH06_RS14200 PF00486 Transcriptional regulatory protein, C terminal SH06_RS14205 PF00576 HIUase/Transthyretin family SH06_RS14210 PF00174 Oxidoreductase molybdopterin binding domain SH06_RS14215 PF01794 Ferric reductase like transmembrane component SH06_RS14220 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SH06_RS14225 PF01292 Prokaryotic cytochrome b561 SH06_RS14240 PF06167 Glucose-regulated metallo-peptidase M90 SH06_RS14250 PF02369 Bacterial Ig-like domain (group 1) SH06_RS14250 PF09134 Invasin, domain 3 SH06_RS14250 PF11924 Inverse autotransporter, beta-domain SH06_RS14260 PF00083 Sugar (and other) transporter SH06_RS14260 PF07690 Major Facilitator Superfamily SH06_RS14265 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus SH06_RS14265 PF01048 Phosphorylase superfamily SH06_RS14270 PF01709 Transcriptional regulator SH06_RS14280 PF01554 MatE SH06_RS14290 PF03466 LysR substrate binding domain SH06_RS14290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS14295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS14295 PF03466 LysR substrate binding domain SH06_RS14305 PF03734 L,D-transpeptidase catalytic domain SH06_RS14305 PF17969 L,D-transpeptidase C-terminal domain SH06_RS14310 PF02277 Phosphoribosyltransferase SH06_RS14315 PF02654 Cobalamin-5-phosphate synthase SH06_RS14320 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase SH06_RS14330 PF05598 Transposase domain (DUF772) SH06_RS14330 PF01609 Transposase DDE domain SH06_RS14340 PF00665 Integrase core domain SH06_RS14340 PF13276 HTH-like domain SH06_RS14345 PF01527 Transposase SH06_RS14350 PF00593 TonB dependent receptor SH06_RS14350 PF07715 TonB-dependent Receptor Plug Domain SH06_RS14360 PF13018 Extended Signal Peptide of Type V secretion system SH06_RS14360 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH06_RS14360 PF03797 Autotransporter beta-domain SH06_RS14370 PF04002 RadC-like JAB domain SH06_RS14375 PF06174 Protein of unknown function (DUF987) SH06_RS14380 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH06_RS14385 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH06_RS14400 PF10662 Ethanolamine utilisation - propanediol utilisation SH06_RS14405 PF04363 Protein of unknown function (DUF496) SH06_RS14410 PF04632 Fusaric acid resistance protein family SH06_RS14415 PF06445 GyrI-like small molecule binding domain SH06_RS14420 PF00768 D-alanyl-D-alanine carboxypeptidase SH06_RS14420 PF07943 Penicillin-binding protein 5, C-terminal domain SH06_RS14425 PF00929 Exonuclease SH06_RS14425 PF08411 Exonuclease C-terminal SH06_RS14430 PF01206 Sulfurtransferase TusA SH06_RS14435 PF04143 Sulphur transport SH06_RS14440 PF13520 Amino acid permease SH06_RS14445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS14445 PF03466 LysR substrate binding domain SH06_RS14450 PF01370 NAD dependent epimerase/dehydratase family SH06_RS14455 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SH06_RS14460 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system SH06_RS14465 PF01634 ATP phosphoribosyltransferase SH06_RS14465 PF08029 HisG, C-terminal domain SH06_RS14470 PF00815 Histidinol dehydrogenase SH06_RS14475 PF00155 Aminotransferase class I and II SH06_RS14480 PF08645 Polynucleotide kinase 3 phosphatase SH06_RS14480 PF00475 Imidazoleglycerol-phosphate dehydratase SH06_RS14485 PF00117 Glutamine amidotransferase class-I SH06_RS14490 PF00977 Histidine biosynthesis protein SH06_RS14495 PF00977 Histidine biosynthesis protein SH06_RS14500 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SH06_RS14500 PF01502 Phosphoribosyl-AMP cyclohydrolase SH06_RS14505 PF02706 Chain length determinant protein SH06_RS14510 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SH06_RS14510 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SH06_RS14510 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SH06_RS14515 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH06_RS14515 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SH06_RS14520 PF05598 Transposase domain (DUF772) SH06_RS14520 PF01609 Transposase DDE domain SH06_RS14530 PF00534 Glycosyl transferases group 1 SH06_RS14535 PF00132 Bacterial transferase hexapeptide (six repeats) SH06_RS14550 PF03275 UDP-galactopyranose mutase SH06_RS14555 PF01943 Polysaccharide biosynthesis protein SH06_RS14560 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SH06_RS14565 PF00483 Nucleotidyl transferase SH06_RS14575 PF16363 GDP-mannose 4,6 dehydratase SH06_RS14580 PF00483 Nucleotidyl transferase SH06_RS14590 PF00534 Glycosyl transferases group 1 SH06_RS14590 PF13439 Glycosyltransferase Family 4 SH06_RS14595 PF04230 Polysaccharide pyruvyl transferase SH06_RS14605 PF02397 Bacterial sugar transferase SH06_RS14610 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH06_RS14610 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH06_RS14610 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH06_RS14610 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH06_RS14615 PF00483 Nucleotidyl transferase SH06_RS14615 PF01050 Mannose-6-phosphate isomerase SH06_RS14620 PF13579 Glycosyl transferase 4-like domain SH06_RS14620 PF00534 Glycosyl transferases group 1 SH06_RS14625 PF00293 NUDIX domain SH06_RS14630 PF01370 NAD dependent epimerase/dehydratase family SH06_RS14635 PF16363 GDP-mannose 4,6 dehydratase SH06_RS14640 PF00132 Bacterial transferase hexapeptide (six repeats) SH06_RS14645 PF00535 Glycosyl transferase family 2 SH06_RS14655 PF00534 Glycosyl transferases group 1 SH06_RS14655 PF13439 Glycosyltransferase Family 4 SH06_RS14660 PF00132 Bacterial transferase hexapeptide (six repeats) SH06_RS14665 PF00535 Glycosyl transferase family 2 SH06_RS14670 PF13614 AAA domain SH06_RS14670 PF13807 G-rich domain on putative tyrosine kinase SH06_RS14670 PF02706 Chain length determinant protein SH06_RS14675 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH06_RS14680 PF18412 Outer-membrane lipoprotein Wza C-terminal domain SH06_RS14680 PF10531 SLBB domain SH06_RS14680 PF02563 Polysaccharide biosynthesis/export protein SH06_RS14685 PF03471 Transporter associated domain SH06_RS14685 PF03741 Integral membrane protein TerC family SH06_RS14685 PF00571 CBS domain SH06_RS14690 PF05170 AsmA family SH06_RS14695 PF00692 dUTPase SH06_RS14700 PF00485 Phosphoribulokinase / Uridine kinase family SH06_RS14705 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS14705 PF05231 MASE1 SH06_RS14705 PF08447 PAS fold SH06_RS14705 PF08448 PAS fold SH06_RS14705 PF13426 PAS domain SH06_RS14705 PF00563 EAL domain SH06_RS14710 PF06029 AlkA N-terminal domain SH06_RS14710 PF00730 HhH-GPD superfamily base excision DNA repair protein SH06_RS14720 PF00012 Hsp70 protein SH06_RS14730 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) SH06_RS14740 PF00092 von Willebrand factor type A domain SH06_RS14745 PF13533 Biotin-lipoyl like SH06_RS14750 PF00873 AcrB/AcrD/AcrF family SH06_RS14755 PF00873 AcrB/AcrD/AcrF family SH06_RS14760 PF07690 Major Facilitator Superfamily SH06_RS14765 PF00672 HAMP domain SH06_RS14765 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS14765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS14770 PF00486 Transcriptional regulatory protein, C terminal SH06_RS14770 PF00072 Response regulator receiver domain SH06_RS14775 PF07411 Domain of unknown function (DUF1508) SH06_RS14780 PF16325 Peptidase family U32 C-terminal domain SH06_RS14780 PF01136 Peptidase family U32 SH06_RS14800 PF00781 Diacylglycerol kinase catalytic domain SH06_RS14810 PF01527 Transposase SH06_RS14815 PF13276 HTH-like domain SH06_RS14815 PF13333 Integrase core domain SH06_RS14815 PF00665 Integrase core domain SH06_RS14820 PF08220 DeoR-like helix-turn-helix domain SH06_RS14825 PF00107 Zinc-binding dehydrogenase SH06_RS14825 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS14830 PF03611 PTS system sugar-specific permease component SH06_RS14835 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH06_RS14840 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH06_RS14845 PF08013 Tagatose 6 phosphate kinase SH06_RS14850 PF01116 Fructose-bisphosphate aldolase class-II SH06_RS14855 PF01791 DeoC/LacD family aldolase SH06_RS14860 PF03825 Nucleoside H+ symporter SH06_RS14865 PF03747 ADP-ribosylglycohydrolase SH06_RS14870 PF00294 pfkB family carbohydrate kinase SH06_RS14875 PF00392 Bacterial regulatory proteins, gntR family SH06_RS14875 PF07702 UTRA domain SH06_RS14880 PF01183 Glycosyl hydrolases family 25 SH06_RS14885 PF08543 Phosphomethylpyrimidine kinase SH06_RS14890 PF02110 Hydroxyethylthiazole kinase family SH06_RS14895 PF02583 Metal-sensitive transcriptional repressor SH06_RS14900 PF03824 High-affinity nickel-transport protein SH06_RS14905 PF11776 Nickel/cobalt transporter regulator SH06_RS14910 PF00419 Fimbrial protein SH06_RS14915 PF13954 PapC N-terminal domain SH06_RS14915 PF00577 Outer membrane usher protein SH06_RS14915 PF13953 PapC C-terminal domain SH06_RS14920 PF02753 Pili assembly chaperone PapD, C-terminal domain SH06_RS14920 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH06_RS14925 PF00419 Fimbrial protein SH06_RS14935 PF10836 Protein of unknown function (DUF2574) SH06_RS14940 PF10609 NUBPL iron-transfer P-loop NTPase SH06_RS14945 PF01588 Putative tRNA binding domain SH06_RS14945 PF09334 tRNA synthetases class I (M) SH06_RS14950 PF05406 WGR domain SH06_RS14960 PF13569 Domain of unknown function (DUF4132) SH06_RS14970 PF07728 AAA domain (dynein-related subfamily) SH06_RS14980 PF05762 VWA domain containing CoxE-like protein SH06_RS14985 PF04434 SWIM zinc finger SH06_RS14990 PF06998 Protein of unknown function (DUF1307) SH06_RS14995 PF07308 Protein of unknown function (DUF1456) SH06_RS15000 PF04397 LytTr DNA-binding domain SH06_RS15000 PF00072 Response regulator receiver domain SH06_RS15005 PF07694 5TMR of 5TMR-LYT SH06_RS15005 PF06580 Histidine kinase SH06_RS15010 PF13411 MerR HTH family regulatory protein SH06_RS15020 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS15025 PF00005 ABC transporter SH06_RS15030 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS15035 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH06_RS15040 PF01915 Glycosyl hydrolase family 3 C-terminal domain SH06_RS15040 PF14310 Fibronectin type III-like domain SH06_RS15040 PF00933 Glycosyl hydrolase family 3 N terminal domain SH06_RS15045 PF01565 FAD binding domain SH06_RS15045 PF09330 D-lactate dehydrogenase, membrane binding SH06_RS15050 PF00768 D-alanyl-D-alanine carboxypeptidase SH06_RS15055 PF04893 Yip1 domain SH06_RS15060 PF09335 SNARE associated Golgi protein SH06_RS15080 PF01207 Dihydrouridine synthase (Dus) SH06_RS15085 PF03788 LrgA family SH06_RS15090 PF04172 LrgB-like family SH06_RS15095 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SH06_RS15095 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region SH06_RS15100 PF02698 DUF218 domain SH06_RS15105 PF10808 Protein of unknown function (DUF2542) SH06_RS15110 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH06_RS15110 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH06_RS15115 PF01180 Dihydroorotate dehydrogenase SH06_RS15120 PF02653 Branched-chain amino acid transport system / permease component SH06_RS15125 PF03400 IS1 transposase SH06_RS15135 PF13407 Periplasmic binding protein domain SH06_RS15140 PF00356 Bacterial regulatory proteins, lacI family SH06_RS15150 PF04235 Protein of unknown function (DUF418) SH06_RS15155 PF01227 GTP cyclohydrolase I SH06_RS15165 PF00756 Putative esterase SH06_RS15170 PF07715 TonB-dependent Receptor Plug Domain SH06_RS15170 PF00593 TonB dependent receptor SH06_RS15175 PF00324 Amino acid permease SH06_RS15180 PF03466 LysR substrate binding domain SH06_RS15180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS15185 PF03601 Conserved hypothetical protein 698 SH06_RS15190 PF01261 Xylose isomerase-like TIM barrel SH06_RS15195 PF00294 pfkB family carbohydrate kinase SH06_RS15200 PF01773 Na+ dependent nucleoside transporter N-terminus SH06_RS15200 PF07662 Na+ dependent nucleoside transporter C-terminus SH06_RS15205 PF01156 Inosine-uridine preferring nucleoside hydrolase SH06_RS15210 PF00027 Cyclic nucleotide-binding domain SH06_RS15215 PF07662 Na+ dependent nucleoside transporter C-terminus SH06_RS15215 PF01773 Na+ dependent nucleoside transporter N-terminus SH06_RS15220 PF04227 Indigoidine synthase A like protein SH06_RS15225 PF00294 pfkB family carbohydrate kinase SH06_RS15230 PF02378 Phosphotransferase system, EIIC SH06_RS15230 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH06_RS15235 PF00294 pfkB family carbohydrate kinase SH06_RS15240 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH06_RS15240 PF00381 PTS HPr component phosphorylation site SH06_RS15245 PF07690 Major Facilitator Superfamily SH06_RS15250 PF03692 Putative zinc- or iron-chelating domain SH06_RS15255 PF01132 Elongation factor P (EF-P) OB domain SH06_RS15255 PF08207 Elongation factor P (EF-P) KOW-like domain SH06_RS15255 PF09285 Elongation factor P, C-terminal SH06_RS15260 PF08125 Mannitol dehydrogenase C-terminal domain SH06_RS15260 PF01232 Mannitol dehydrogenase Rossmann domain SH06_RS15265 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH06_RS15265 PF07683 Cobalamin synthesis protein cobW C-terminal domain SH06_RS15270 PF01569 PAP2 superfamily SH06_RS15275 PF00877 NlpC/P60 family SH06_RS15280 PF00563 EAL domain SH06_RS15280 PF12792 CSS motif domain associated with EAL SH06_RS15285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH06_RS15290 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS15295 PF12911 N-terminal TM domain of oligopeptide transport permease C SH06_RS15295 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS15300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH06_RS15300 PF00005 ABC transporter SH06_RS15305 PF13989 YejG-like protein SH06_RS15310 PF07690 Major Facilitator Superfamily SH06_RS15315 PF00849 RNA pseudouridylate synthase SH06_RS15315 PF01479 S4 domain SH06_RS15320 PF04851 Type III restriction enzyme, res subunit SH06_RS15320 PF00271 Helicase conserved C-terminal domain SH06_RS15325 PF01386 Ribosomal L25p family SH06_RS15330 PF04245 37-kD nucleoid-associated bacterial protein SH06_RS15335 PF07208 Protein of unknown function (DUF1414) SH06_RS15340 PF11893 Domain of unknown function (DUF3413) SH06_RS15340 PF00884 Sulfatase SH06_RS15350 PF03797 Autotransporter beta-domain SH06_RS15350 PF03212 Pertactin SH06_RS15350 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH06_RS15355 PF05598 Transposase domain (DUF772) SH06_RS15355 PF01609 Transposase DDE domain SH06_RS15365 PF00196 Bacterial regulatory proteins, luxR family SH06_RS15365 PF00072 Response regulator receiver domain SH06_RS15370 PF03918 Cytochrome C biogenesis protein SH06_RS15375 PF08534 Redoxin SH06_RS15380 PF01578 Cytochrome C assembly protein SH06_RS15380 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SH06_RS15385 PF03100 CcmE SH06_RS15390 PF04995 Heme exporter protein D (CcmD) SH06_RS15395 PF01578 Cytochrome C assembly protein SH06_RS15400 PF03379 CcmB protein SH06_RS15405 PF00005 ABC transporter SH06_RS15410 PF03264 NapC/NirT cytochrome c family, N-terminal region SH06_RS15415 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) SH06_RS15420 PF12801 4Fe-4S binding domain SH06_RS15420 PF13237 4Fe-4S dicluster domain SH06_RS15425 PF12838 4Fe-4S dicluster domain SH06_RS15425 PF12800 4Fe-4S binding domain SH06_RS15430 PF01568 Molydopterin dinucleotide binding domain SH06_RS15430 PF00384 Molybdopterin oxidoreductase SH06_RS15430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS15435 PF03927 NapD protein SH06_RS15440 PF13187 4Fe-4S dicluster domain SH06_RS15440 PF12800 4Fe-4S binding domain SH06_RS15440 PF00037 4Fe-4S binding domain SH06_RS15450 PF03974 Ecotin SH06_RS15455 PF06039 Malate:quinone oxidoreductase (Mqo) SH06_RS15460 PF00005 ABC transporter SH06_RS15465 PF13532 2OG-Fe(II) oxygenase superfamily SH06_RS15470 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SH06_RS15470 PF12833 Helix-turn-helix domain SH06_RS15470 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH06_RS15470 PF02805 Metal binding domain of Ada SH06_RS15475 PF02424 ApbE family SH06_RS15480 PF00267 Gram-negative porin SH06_RS15495 PF16359 RcsD-ABL domain SH06_RS15495 PF01627 Hpt domain SH06_RS15495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS15500 PF00072 Response regulator receiver domain SH06_RS15500 PF00196 Bacterial regulatory proteins, luxR family SH06_RS15505 PF00072 Response regulator receiver domain SH06_RS15505 PF09456 RcsC Alpha-Beta-Loop (ABL) SH06_RS15505 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS15505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS15510 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS15510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS15510 PF00989 PAS fold SH06_RS15515 PF00072 Response regulator receiver domain SH06_RS15515 PF02954 Bacterial regulatory protein, Fis family SH06_RS15515 PF00158 Sigma-54 interaction domain SH06_RS15520 PF01144 Coenzyme A transferase SH06_RS15525 PF01144 Coenzyme A transferase SH06_RS15530 PF02667 Short chain fatty acid transporter SH06_RS15535 PF00108 Thiolase, N-terminal domain SH06_RS15535 PF02803 Thiolase, C-terminal domain SH06_RS15540 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) SH06_RS15545 PF08486 Stage II sporulation protein SH06_RS15545 PF10062 Predicted secreted protein (DUF2300) SH06_RS15550 PF01835 MG2 domain SH06_RS15550 PF00207 Alpha-2-macroglobulin family SH06_RS15550 PF07703 Alpha-2-macroglobulin bait region domain SH06_RS15555 PF07703 Alpha-2-macroglobulin bait region domain SH06_RS15555 PF01835 MG2 domain SH06_RS15555 PF00207 Alpha-2-macroglobulin family SH06_RS15560 PF06672 Protein of unknown function (DUF1175) SH06_RS15565 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) SH06_RS15570 PF00521 DNA gyrase/topoisomerase IV, subunit A SH06_RS15570 PF03989 DNA gyrase C-terminal domain, beta-propeller SH06_RS15580 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat SH06_RS15580 PF12951 Passenger-associated-transport-repeat SH06_RS15580 PF03797 Autotransporter beta-domain SH06_RS15590 PF02867 Ribonucleotide reductase, barrel domain SH06_RS15590 PF03477 ATP cone domain SH06_RS15590 PF00317 Ribonucleotide reductase, all-alpha domain SH06_RS15595 PF00268 Ribonucleotide reductase, small chain SH06_RS15600 PF00111 2Fe-2S iron-sulfur cluster binding domain SH06_RS15615 PF03009 Glycerophosphoryl diester phosphodiesterase family SH06_RS15620 PF07690 Major Facilitator Superfamily SH06_RS15625 PF04324 BFD-like [2Fe-2S] binding domain SH06_RS15625 PF01266 FAD dependent oxidoreductase SH06_RS15630 PF00890 FAD binding domain SH06_RS15635 PF02754 Cysteine-rich domain SH06_RS15635 PF13183 4Fe-4S dicluster domain SH06_RS15640 PF04754 Putative transposase, YhgA-like SH06_RS15650 PF03328 HpcH/HpaI aldolase/citrate lyase family SH06_RS15655 PF07690 Major Facilitator Superfamily SH06_RS15665 PF01614 Bacterial transcriptional regulator SH06_RS15665 PF09339 IclR helix-turn-helix domain SH06_RS15670 PF00994 Probable molybdopterin binding domain SH06_RS15675 PF07437 YfaZ precursor SH06_RS15680 PF00293 NUDIX domain SH06_RS15685 PF00300 Histidine phosphatase superfamily (branch 1) SH06_RS15690 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SH06_RS15695 PF00535 Glycosyl transferase family 2 SH06_RS15700 PF00551 Formyl transferase SH06_RS15700 PF01370 NAD dependent epimerase/dehydratase family SH06_RS15700 PF02911 Formyl transferase, C-terminal domain SH06_RS15705 PF01522 Polysaccharide deacetylase SH06_RS15710 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase SH06_RS15715 PF00892 EamA-like transporter family SH06_RS15730 PF13193 AMP-binding enzyme C-terminal domain SH06_RS15730 PF00501 AMP-binding enzyme SH06_RS15735 PF13378 Enolase C-terminal domain-like SH06_RS15740 PF00378 Enoyl-CoA hydratase/isomerase SH06_RS15745 PF12697 Alpha/beta hydrolase family SH06_RS15750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH06_RS15750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH06_RS15750 PF16582 Middle domain of thiamine pyrophosphate SH06_RS15755 PF00425 chorismate binding enzyme SH06_RS15760 PF05957 Bacterial protein of unknown function (DUF883) SH06_RS15765 PF13673 Acetyltransferase (GNAT) domain SH06_RS15770 PF12706 Beta-lactamase superfamily domain SH06_RS15775 PF02902 Ulp1 protease family, C-terminal catalytic domain SH06_RS15780 PF12034 Domain of unknown function (DUF3520) SH06_RS15780 PF12450 von Willebrand factor SH06_RS15780 PF00092 von Willebrand factor type A domain SH06_RS15785 PF04389 Peptidase family M28 SH06_RS15790 PF08974 Domain of unknown function (DUF1877) SH06_RS15810 PF00361 Proton-conducting membrane transporter SH06_RS15815 PF00361 Proton-conducting membrane transporter SH06_RS15820 PF00361 Proton-conducting membrane transporter SH06_RS15820 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH06_RS15825 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SH06_RS15830 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SH06_RS15835 PF12838 4Fe-4S dicluster domain SH06_RS15840 PF00146 NADH dehydrogenase SH06_RS15845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS15845 PF01568 Molydopterin dinucleotide binding domain SH06_RS15845 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SH06_RS15845 PF00384 Molybdopterin oxidoreductase SH06_RS15850 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SH06_RS15850 PF10531 SLBB domain SH06_RS15850 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SH06_RS15860 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH06_RS15860 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH06_RS15865 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH06_RS15870 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SH06_RS15875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS15875 PF03466 LysR substrate binding domain SH06_RS15880 PF00155 Aminotransferase class I and II SH06_RS15890 PF03600 Citrate transporter SH06_RS15890 PF02080 TrkA-C domain SH06_RS15895 PF13419 Haloacid dehalogenase-like hydrolase SH06_RS15900 PF03887 YfbU domain SH06_RS15905 PF04217 Protein of unknown function, DUF412 SH06_RS15915 PF00871 Acetokinase family SH06_RS15920 PF07085 DRTGG domain SH06_RS15920 PF01515 Phosphate acetyl/butaryl transferase SH06_RS15925 PF03606 C4-dicarboxylate anaerobic carrier SH06_RS15930 PF00293 NUDIX domain SH06_RS15935 PF12850 Calcineurin-like phosphoesterase superfamily domain SH06_RS15940 PF14834 Glutathione S-transferase, C-terminal domain SH06_RS15940 PF02798 Glutathione S-transferase, N-terminal domain SH06_RS15945 PF02798 Glutathione S-transferase, N-terminal domain SH06_RS15945 PF00043 Glutathione S-transferase, C-terminal domain SH06_RS15950 PF02152 Dihydroneopterin aldolase SH06_RS15955 PF08338 Domain of unknown function (DUF1731) SH06_RS15955 PF01370 NAD dependent epimerase/dehydratase family SH06_RS15960 PF04754 Putative transposase, YhgA-like SH06_RS15965 PF00005 ABC transporter SH06_RS15970 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS15975 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS15980 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH06_RS15985 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH06_RS15990 PF02441 Flavoprotein SH06_RS15995 PF00156 Phosphoribosyl transferase domain SH06_RS16000 PF02674 Colicin V production protein SH06_RS16005 PF05036 Sporulation related domain SH06_RS16010 PF08245 Mur ligase middle domain SH06_RS16010 PF02875 Mur ligase family, glutamate ligase domain SH06_RS16015 PF01039 Carboxyl transferase domain SH06_RS16015 PF17848 Acetyl-coA carboxylase zinc finger domain SH06_RS16020 PF09335 SNARE associated Golgi protein SH06_RS16025 PF01416 tRNA pseudouridine synthase SH06_RS16030 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH06_RS16030 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH06_RS16035 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH06_RS16035 PF11890 Domain of unknown function (DUF3410) SH06_RS16035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH06_RS16045 PF07690 Major Facilitator Superfamily SH06_RS16050 PF02801 Beta-ketoacyl synthase, C-terminal domain SH06_RS16050 PF00109 Beta-ketoacyl synthase, N-terminal domain SH06_RS16055 PF01266 FAD dependent oxidoreductase SH06_RS16055 PF05430 S-adenosyl-L-methionine-dependent methyltransferase SH06_RS16060 PF08891 YfcL protein SH06_RS16065 PF04315 Elongation factor P hydroxylase SH06_RS16070 PF01925 Sulfite exporter TauE/SafE SH06_RS16075 PF03411 Penicillin-insensitive murein endopeptidase SH06_RS16080 PF01264 Chorismate synthase SH06_RS16085 PF05175 Methyltransferase small domain SH06_RS16090 PF01713 Smr domain SH06_RS16095 PF11245 Protein of unknown function (DUF2544) SH06_RS16100 PF00419 Fimbrial protein SH06_RS16105 PF00419 Fimbrial protein SH06_RS16110 PF00419 Fimbrial protein SH06_RS16115 PF02753 Pili assembly chaperone PapD, C-terminal domain SH06_RS16115 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH06_RS16125 PF00419 Fimbrial protein SH06_RS16130 PF00300 Histidine phosphatase superfamily (branch 1) SH06_RS16135 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH06_RS16135 PF00378 Enoyl-CoA hydratase/isomerase SH06_RS16135 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH06_RS16140 PF00108 Thiolase, N-terminal domain SH06_RS16140 PF02803 Thiolase, C-terminal domain SH06_RS16145 PF04175 Protein of unknown function (DUF406) SH06_RS16150 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) SH06_RS16160 PF04333 MlaA lipoprotein SH06_RS16165 PF01226 Formate/nitrite transporter SH06_RS16175 PF00589 Phage integrase family SH06_RS16175 PF14659 Phage integrase, N-terminal SAM-like domain SH06_RS16175 PF13356 Arm DNA-binding domain SH06_RS16180 PF04138 GtrA-like protein SH06_RS16185 PF00535 Glycosyl transferase family 2 SH06_RS16195 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH06_RS16200 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH06_RS16210 PF05869 DNA N-6-adenine-methyltransferase (Dam) SH06_RS16215 PF06069 PerC transcriptional activator SH06_RS16235 PF10065 Uncharacterized conserved protein (DUF2303) SH06_RS16260 PF03466 LysR substrate binding domain SH06_RS16260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS16265 PF02447 GntP family permease SH06_RS16270 PF00291 Pyridoxal-phosphate dependent enzyme SH06_RS16275 PF07690 Major Facilitator Superfamily SH06_RS16280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH06_RS16280 PF00529 HlyD membrane-fusion protein of T1SS SH06_RS16285 PF00072 Response regulator receiver domain SH06_RS16285 PF00196 Bacterial regulatory proteins, luxR family SH06_RS16290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS16290 PF00072 Response regulator receiver domain SH06_RS16290 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS16290 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH06_RS16290 PF01627 Hpt domain SH06_RS16295 PF02515 CoA-transferase family III SH06_RS16300 PF03547 Membrane transport protein SH06_RS16305 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH06_RS16305 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH06_RS16305 PF00205 Thiamine pyrophosphate enzyme, central domain SH06_RS16310 PF02515 CoA-transferase family III SH06_RS16315 PF10938 YfdX protein SH06_RS16330 PF10810 Protein of unknown function (DUF2545) SH06_RS16335 PF03279 Bacterial lipid A biosynthesis acyltransferase SH06_RS16340 PF00155 Aminotransferase class I and II SH06_RS16345 PF06580 Histidine kinase SH06_RS16345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS16345 PF07694 5TMR of 5TMR-LYT SH06_RS16350 PF04397 LytTr DNA-binding domain SH06_RS16350 PF00072 Response regulator receiver domain SH06_RS16355 PF12833 Helix-turn-helix domain SH06_RS16360 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH06_RS16360 PF05524 PEP-utilising enzyme, N-terminal SH06_RS16360 PF00381 PTS HPr component phosphorylation site SH06_RS16360 PF02896 PEP-utilising enzyme, TIM barrel domain SH06_RS16360 PF00391 PEP-utilising enzyme, mobile domain SH06_RS16365 PF05343 M42 glutamyl aminopeptidase SH06_RS16370 PF01321 Creatinase/Prolidase N-terminal domain SH06_RS16370 PF00557 Metallopeptidase family M24 SH06_RS16375 PF02378 Phosphotransferase system, EIIC SH06_RS16380 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH06_RS16385 PF02685 Glucokinase SH06_RS16390 PF00654 Voltage gated chloride channel SH06_RS16395 PF10697 Protein of unknown function (DUF2502) SH06_RS16405 PF01566 Natural resistance-associated macrophage protein SH06_RS16410 PF07662 Na+ dependent nucleoside transporter C-terminus SH06_RS16410 PF07670 Nucleoside recognition SH06_RS16410 PF01773 Na+ dependent nucleoside transporter N-terminus SH06_RS16415 PF01609 Transposase DDE domain SH06_RS16420 PF05231 MASE1 SH06_RS16420 PF00563 EAL domain SH06_RS16435 PF07037 Putative transcription regulator (DUF1323) SH06_RS16440 PF07037 Putative transcription regulator (DUF1323) SH06_RS16445 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH06_RS16470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS16470 PF03466 LysR substrate binding domain SH06_RS16480 PF03825 Nucleoside H+ symporter SH06_RS16485 PF01048 Phosphorylase superfamily SH06_RS16490 PF03502 Nucleoside-specific channel-forming protein, Tsx SH06_RS16495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS16495 PF03466 LysR substrate binding domain SH06_RS16500 PF13593 SBF-like CPA transporter family (DUF4137) SH06_RS16505 PF12843 Putative quorum-sensing-regulated virulence factor SH06_RS16510 PF03120 NAD-dependent DNA ligase OB-fold domain SH06_RS16510 PF12826 Helix-hairpin-helix motif SH06_RS16510 PF00533 BRCA1 C Terminus (BRCT) domain SH06_RS16510 PF01653 NAD-dependent DNA ligase adenylation domain SH06_RS16510 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SH06_RS16515 PF04354 ZipA, C-terminal FtsZ-binding domain SH06_RS16525 PF00291 Pyridoxal-phosphate dependent enzyme SH06_RS16530 PF00381 PTS HPr component phosphorylation site SH06_RS16535 PF05524 PEP-utilising enzyme, N-terminal SH06_RS16535 PF02896 PEP-utilising enzyme, TIM barrel domain SH06_RS16535 PF00391 PEP-utilising enzyme, mobile domain SH06_RS16540 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH06_RS16545 PF08543 Phosphomethylpyrimidine kinase SH06_RS16550 PF17263 Family of unknown function (DUF5329) SH06_RS16555 PF05406 WGR domain SH06_RS16560 PF00291 Pyridoxal-phosphate dependent enzyme SH06_RS16565 PF00005 ABC transporter SH06_RS16570 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS16575 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS16590 PF01418 Helix-turn-helix domain, rpiR family SH06_RS16590 PF01380 SIS domain SH06_RS16595 PF01380 SIS domain SH06_RS16600 PF02378 Phosphotransferase system, EIIC SH06_RS16600 PF00367 phosphotransferase system, EIIB SH06_RS16605 PF00144 Beta-lactamase SH06_RS16610 PF04261 Dyp-type peroxidase family SH06_RS16615 PF06572 Protein of unknown function (DUF1131) SH06_RS16620 PF11143 Protein of unknown function (DUF2919) SH06_RS16625 PF00583 Acetyltransferase (GNAT) family SH06_RS16630 PF01520 N-acetylmuramoyl-L-alanine amidase SH06_RS16635 PF01218 Coproporphyrinogen III oxidase SH06_RS16640 PF12833 Helix-turn-helix domain SH06_RS16645 PF16365 Ethanolamine utilization protein EutK C-terminus SH06_RS16645 PF00936 BMC domain SH06_RS16650 PF00936 BMC domain SH06_RS16655 PF05985 Ethanolamine ammonia-lyase light chain (EutC) SH06_RS16660 PF06751 Ethanolamine ammonia lyase large subunit (EutB) SH06_RS16665 PF06277 Ethanolamine utilisation protein EutA SH06_RS16670 PF04346 Ethanolamine utilisation protein, EutH SH06_RS16675 PF00465 Iron-containing alcohol dehydrogenase SH06_RS16685 PF00171 Aldehyde dehydrogenase family SH06_RS16690 PF03319 Ethanolamine utilisation protein EutN/carboxysome SH06_RS16695 PF00936 BMC domain SH06_RS16700 PF01515 Phosphate acetyl/butaryl transferase SH06_RS16705 PF01923 Cobalamin adenosyltransferase SH06_RS16710 PF06249 Ethanolamine utilisation protein EutQ SH06_RS16715 PF10662 Ethanolamine utilisation - propanediol utilisation SH06_RS16720 PF00936 BMC domain SH06_RS16725 PF03949 Malic enzyme, NAD binding domain SH06_RS16725 PF00390 Malic enzyme, N-terminal domain SH06_RS16725 PF01515 Phosphate acetyl/butaryl transferase SH06_RS16730 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH06_RS16735 PF02780 Transketolase, C-terminal domain SH06_RS16735 PF02779 Transketolase, pyrimidine binding domain SH06_RS16735 PF00456 Transketolase, thiamine diphosphate binding domain SH06_RS16740 PF06674 Protein of unknown function (DUF1176) SH06_RS16745 PF00293 NUDIX domain SH06_RS16750 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH06_RS16750 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH06_RS16750 PF13247 4Fe-4S dicluster domain SH06_RS16755 PF00672 HAMP domain SH06_RS16755 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SH06_RS16755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS16755 PF07730 Histidine kinase SH06_RS16760 PF00873 AcrB/AcrD/AcrF family SH06_RS16770 PF03960 ArsC family SH06_RS16775 PF01546 Peptidase family M20/M25/M40 SH06_RS16775 PF07687 Peptidase dimerisation domain SH06_RS16780 PF13980 Uncharacterised protein family (UPF0370) SH06_RS16785 PF02230 Phospholipase/Carboxylesterase SH06_RS16790 PF13718 GNAT acetyltransferase 2 SH06_RS16790 PF08351 Domain of unknown function (DUF1726) SH06_RS16790 PF05127 Helicase SH06_RS16790 PF17176 tRNA-binding domain SH06_RS16795 PF04228 Putative neutral zinc metallopeptidase SH06_RS16800 PF01259 SAICAR synthetase SH06_RS16810 PF06804 NlpB/DapX lipoprotein SH06_RS16815 PF00701 Dihydrodipicolinate synthetase family SH06_RS16820 PF01842 ACT domain SH06_RS16825 PF00578 AhpC/TSA family SH06_RS16830 PF12798 4Fe-4S binding domain SH06_RS16830 PF00037 4Fe-4S binding domain SH06_RS16835 PF00361 Proton-conducting membrane transporter SH06_RS16840 PF00146 NADH dehydrogenase SH06_RS16845 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH06_RS16845 PF00361 Proton-conducting membrane transporter SH06_RS16850 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SH06_RS16855 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH06_RS16855 PF00361 Proton-conducting membrane transporter SH06_RS16860 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH06_RS16860 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH06_RS16860 PF00374 Nickel-dependent hydrogenase SH06_RS16865 PF12838 4Fe-4S dicluster domain SH06_RS16870 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH06_RS16875 PF07450 Formate hydrogenlyase maturation protein HycH SH06_RS16880 PF01590 GAF domain SH06_RS16880 PF00158 Sigma-54 interaction domain SH06_RS16885 PF01226 Formate/nitrite transporter SH06_RS16890 PF01594 AI-2E family transporter SH06_RS16895 PF01435 Peptidase family M48 SH06_RS16900 PF03960 ArsC family SH06_RS16905 PF00308 Bacterial dnaA protein SH06_RS16910 PF00860 Permease family SH06_RS16920 PF00586 AIR synthase related protein, N-terminal domain SH06_RS16920 PF02769 AIR synthase related protein, C-terminal domain SH06_RS16925 PF00551 Formyl transferase SH06_RS16930 PF17941 Polyphosphate kinase C-terminal domain 1 SH06_RS16930 PF13089 Polyphosphate kinase N-terminal domain SH06_RS16930 PF02503 Polyphosphate kinase middle domain SH06_RS16930 PF13090 Polyphosphate kinase C-terminal domain 2 SH06_RS16935 PF02541 Ppx/GppA phosphatase family SH06_RS16940 PF00563 EAL domain SH06_RS16940 PF05231 MASE1 SH06_RS16950 PF11119 Protein of unknown function (DUF2633) SH06_RS16955 PF05433 Glycine zipper 2TM domain SH06_RS16960 PF17358 Family of unknown function (DUF5384) SH06_RS16965 PF00958 GMP synthase C terminal domain SH06_RS16965 PF00117 Glutamine amidotransferase class-I SH06_RS16965 PF02540 NAD synthase SH06_RS16970 PF00478 IMP dehydrogenase / GMP reductase domain SH06_RS16970 PF00571 CBS domain SH06_RS16975 PF13742 OB-fold nucleic acid binding domain SH06_RS16975 PF02601 Exonuclease VII, large subunit SH06_RS16980 PF07191 zinc-ribbons SH06_RS16985 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SH06_RS16985 PF01926 50S ribosome-binding GTPase SH06_RS16990 PF13360 PQQ-like domain SH06_RS16995 PF09976 Tetratricopeptide repeat-like domain SH06_RS17000 PF03129 Anticodon binding domain SH06_RS17000 PF13393 Histidyl-tRNA synthetase SH06_RS17005 PF04551 GcpE protein SH06_RS17010 PF13464 Domain of unknown function (DUF4115) SH06_RS17015 PF04055 Radical SAM superfamily SH06_RS17020 PF00334 Nucleoside diphosphate kinase SH06_RS17025 PF00912 Transglycosylase SH06_RS17025 PF00905 Penicillin binding protein transpeptidase domain SH06_RS17025 PF06832 Penicillin-Binding Protein C-terminus Family SH06_RS17030 PF07703 Alpha-2-macroglobulin bait region domain SH06_RS17030 PF01835 MG2 domain SH06_RS17030 PF11974 Bacterial alpha-2-macroglobulin MG3 domain SH06_RS17030 PF00207 Alpha-2-macroglobulin family SH06_RS17030 PF07678 A-macroglobulin TED domain SH06_RS17030 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain SH06_RS17030 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain SH06_RS17030 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain SH06_RS17030 PF17962 Bacterial macroglobulin domain 6 SH06_RS17035 PF00581 Rhodanese-like domain SH06_RS17040 PF14581 SseB protein C-terminal domain SH06_RS17040 PF07179 SseB protein N-terminal domain SH06_RS17045 PF12404 Peptidase SH06_RS17045 PF00883 Cytosol aminopeptidase family, catalytic domain SH06_RS17050 PF04384 Iron-sulphur cluster assembly SH06_RS17055 PF00111 2Fe-2S iron-sulfur cluster binding domain SH06_RS17060 PF00012 Hsp70 protein SH06_RS17065 PF07743 HSCB C-terminal oligomerisation domain SH06_RS17070 PF01521 Iron-sulphur cluster biosynthesis SH06_RS17075 PF01592 NifU-like N terminal domain SH06_RS17080 PF00266 Aminotransferase class-V SH06_RS17085 PF02082 Transcriptional regulator SH06_RS17090 PF00588 SpoU rRNA Methylase family SH06_RS17095 PF00459 Inositol monophosphatase family SH06_RS17100 PF12146 Serine aminopeptidase, S33 SH06_RS17105 PF00874 PRD domain SH06_RS17110 PF12832 MFS_1 like family SH06_RS17115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS17115 PF03466 LysR substrate binding domain SH06_RS17120 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SH06_RS17120 PF00355 Rieske [2Fe-2S] domain SH06_RS17125 PF00866 Ring hydroxylating beta subunit SH06_RS17130 PF00355 Rieske [2Fe-2S] domain SH06_RS17135 PF00106 short chain dehydrogenase SH06_RS17140 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH06_RS17140 PF14759 Reductase C-terminal SH06_RS17145 PF07681 DoxX SH06_RS17150 PF01263 Aldose 1-epimerase SH06_RS17155 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS17155 PF00107 Zinc-binding dehydrogenase SH06_RS17160 PF02653 Branched-chain amino acid transport system / permease component SH06_RS17165 PF00005 ABC transporter SH06_RS17170 PF13407 Periplasmic binding protein domain SH06_RS17175 PF17128 Domain of unknown function (DUF5107) SH06_RS17175 PF13181 Tetratricopeptide repeat SH06_RS17180 PF00480 ROK family SH06_RS17185 PF00464 Serine hydroxymethyltransferase SH06_RS17190 PF00970 Oxidoreductase FAD-binding domain SH06_RS17190 PF00175 Oxidoreductase NAD-binding domain SH06_RS17190 PF00042 Globin SH06_RS17195 PF00543 Nitrogen regulatory protein P-II SH06_RS17200 PF00158 Sigma-54 interaction domain SH06_RS17200 PF00072 Response regulator receiver domain SH06_RS17205 PF13942 YfhG lipoprotein SH06_RS17210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS17210 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS17215 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal SH06_RS17215 PF02769 AIR synthase related protein, C-terminal domain SH06_RS17215 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SH06_RS17220 PF01464 Transglycosylase SLT domain SH06_RS17220 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH06_RS17225 PF14437 MafB19-like deaminase SH06_RS17235 PF01380 SIS domain SH06_RS17235 PF01418 Helix-turn-helix domain, rpiR family SH06_RS17240 PF12838 4Fe-4S dicluster domain SH06_RS17260 PF01648 4'-phosphopantetheinyl transferase superfamily SH06_RS17265 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SH06_RS17270 PF02565 Recombination protein O C terminal SH06_RS17270 PF11967 Recombination protein O N terminal SH06_RS17275 PF01926 50S ribosome-binding GTPase SH06_RS17275 PF07650 KH domain SH06_RS17280 PF00035 Double-stranded RNA binding motif SH06_RS17280 PF14622 Ribonuclease-III-like SH06_RS17285 PF10502 Signal peptidase, peptidase S26 SH06_RS17290 PF00009 Elongation factor Tu GTP binding domain SH06_RS17290 PF00679 Elongation factor G C-terminus SH06_RS17290 PF06421 GTP-binding protein LepA C-terminus SH06_RS17290 PF03144 Elongation factor Tu domain 2 SH06_RS17300 PF03888 MucB/RseB N-terminal domain SH06_RS17300 PF17188 MucB/RseB C-terminal domain SH06_RS17305 PF03872 Anti sigma-E protein RseA, N-terminal domain SH06_RS17305 PF03873 Anti sigma-E protein RseA, C-terminal domain SH06_RS17310 PF04542 Sigma-70 region 2 SH06_RS17310 PF08281 Sigma-70, region 4 SH06_RS17320 PF02910 Fumarate reductase flavoprotein C-term SH06_RS17320 PF00890 FAD binding domain SH06_RS17325 PF05175 Methyltransferase small domain SH06_RS17330 PF00271 Helicase conserved C-terminal domain SH06_RS17330 PF00270 DEAD/DEAH box helicase SH06_RS17340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS17340 PF03466 LysR substrate binding domain SH06_RS17345 PF01810 LysE type translocator SH06_RS17350 PF01228 Glycine radical SH06_RS17355 PF03167 Uracil DNA glycosylase superfamily SH06_RS17360 PF00588 SpoU rRNA Methylase family SH06_RS17360 PF08032 RNA 2'-O ribose methyltransferase substrate binding SH06_RS17370 PF00085 Thioredoxin SH06_RS17375 PF03942 DTW domain SH06_RS17380 PF13607 Succinyl-CoA ligase like flavodoxin domain SH06_RS17380 PF00583 Acetyltransferase (GNAT) family SH06_RS17380 PF13380 CoA binding domain SH06_RS17385 PF13091 PLD-like domain SH06_RS17390 PF10043 Predicted periplasmic lipoprotein (DUF2279) SH06_RS17395 PF00083 Sugar (and other) transporter SH06_RS17425 PF02861 Clp amino terminal domain, pathogenicity island component SH06_RS17425 PF17871 AAA lid domain SH06_RS17425 PF10431 C-terminal, D2-small domain, of ClpB protein SH06_RS17425 PF00004 ATPase family associated with various cellular activities (AAA) SH06_RS17425 PF07724 AAA domain (Cdc48 subfamily) SH06_RS17430 PF02578 Multi-copper polyphenol oxidoreductase laccase SH06_RS17435 PF00849 RNA pseudouridylate synthase SH06_RS17435 PF01479 S4 domain SH06_RS17440 PF13525 Outer membrane lipoprotein SH06_RS17450 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SH06_RS17455 PF01817 Chorismate mutase type II SH06_RS17455 PF00800 Prephenate dehydratase SH06_RS17460 PF01817 Chorismate mutase type II SH06_RS17460 PF02153 Prephenate dehydrogenase SH06_RS17465 PF00793 DAHP synthetase I family SH06_RS17470 PF10973 Protein of unknown function (DUF2799) SH06_RS17475 PF13689 YfiR/HmsC-like SH06_RS17480 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS17480 PF17152 Periplasmic sensor domain SH06_RS17485 PF00691 OmpA family SH06_RS17490 PF01245 Ribosomal protein L19 SH06_RS17495 PF01746 tRNA (Guanine-1)-methyltransferase SH06_RS17500 PF01782 RimM N-terminal domain SH06_RS17500 PF05239 PRC-barrel domain SH06_RS17505 PF00886 Ribosomal protein S16 SH06_RS17510 PF00448 SRP54-type protein, GTPase domain SH06_RS17510 PF02978 Signal peptide binding domain SH06_RS17510 PF02881 SRP54-type protein, helical bundle domain SH06_RS17515 PF01578 Cytochrome C assembly protein SH06_RS17520 PF00571 CBS domain SH06_RS17520 PF01595 Cyclin M transmembrane N-terminal domain SH06_RS17520 PF03471 Transporter associated domain SH06_RS17525 PF01025 GrpE SH06_RS17535 PF01513 ATP-NAD kinase SH06_RS17540 PF02463 RecF/RecN/SMC N terminal domain SH06_RS17545 PF04355 SmpA / OmlA family SH06_RS17550 PF03658 RnfH family Ubiquitin SH06_RS17555 PF03364 Polyketide cyclase / dehydrase and lipid transport SH06_RS17560 PF01668 SmpB protein SH06_RS17565 PF13356 Arm DNA-binding domain SH06_RS17565 PF00589 Phage integrase family SH06_RS17575 PF05930 Prophage CP4-57 regulatory protein (AlpA) SH06_RS17580 PF13148 Protein of unknown function (DUF3987) SH06_RS17590 PF00271 Helicase conserved C-terminal domain SH06_RS17595 PF14130 Domain of unknown function (DUF4297) SH06_RS17595 PF08878 Domain of unknown function (DUF1837) SH06_RS17600 PF07510 Protein of unknown function (DUF1524) SH06_RS17605 PF15935 RNase LS, bacterial toxin SH06_RS17610 PF15933 Antitoxin to bacterial toxin RNase LS or RnlA SH06_RS17615 PF01926 50S ribosome-binding GTPase SH06_RS17620 PF06067 Domain of unknown function (DUF932) SH06_RS17625 PF08220 DeoR-like helix-turn-helix domain SH06_RS17625 PF13280 WYL domain SH06_RS17660 PF03230 Antirestriction protein SH06_RS17665 PF04002 RadC-like JAB domain SH06_RS17670 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH06_RS17675 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH06_RS17680 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH06_RS17680 PF03797 Autotransporter beta-domain SH06_RS17680 PF03212 Pertactin SH06_RS17695 PF17621 Family of unknown function (DUF5508) SH06_RS17700 PF17612 Family of unknown function (DUF5507) SH06_RS17715 PF00128 Alpha amylase, catalytic domain SH06_RS17720 PF00128 Alpha amylase, catalytic domain SH06_RS17725 PF00128 Alpha amylase, catalytic domain SH06_RS17730 PF08943 CsiD SH06_RS17735 PF01266 FAD dependent oxidoreductase SH06_RS17740 PF00171 Aldehyde dehydrogenase family SH06_RS17745 PF00202 Aminotransferase class-III SH06_RS17750 PF00324 Amino acid permease SH06_RS17755 PF07729 FCD domain SH06_RS17755 PF00392 Bacterial regulatory proteins, gntR family SH06_RS17760 PF01476 LysM domain SH06_RS17760 PF04972 BON domain SH06_RS17765 PF01679 Proteolipid membrane potential modulator SH06_RS17770 PF01022 Bacterial regulatory protein, arsR family SH06_RS17775 PF00581 Rhodanese-like domain SH06_RS17775 PF11127 Protein of unknown function (DUF2892) SH06_RS17780 PF00816 H-NS histone family SH06_RS17785 PF06610 L-alanine exporter SH06_RS17790 PF09400 Protein of unknown function (DUF2002) SH06_RS17795 PF05957 Bacterial protein of unknown function (DUF883) SH06_RS17800 PF00462 Glutaredoxin SH06_RS17805 PF07972 NrdI Flavodoxin like SH06_RS17810 PF08343 Ribonucleotide reductase N-terminal SH06_RS17810 PF02867 Ribonucleotide reductase, barrel domain SH06_RS17810 PF00317 Ribonucleotide reductase, all-alpha domain SH06_RS17815 PF00268 Ribonucleotide reductase, small chain SH06_RS17820 PF00571 CBS domain SH06_RS17820 PF00005 ABC transporter SH06_RS17825 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS17830 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH06_RS17840 PF03591 AzlC protein SH06_RS17845 PF05437 Branched-chain amino acid transport protein (AzlD) SH06_RS17850 PF01047 MarR family SH06_RS17855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH06_RS17855 PF00529 HlyD membrane-fusion protein of T1SS SH06_RS17860 PF07690 Major Facilitator Superfamily SH06_RS17865 PF02664 S-Ribosylhomocysteinase (LuxS) SH06_RS17870 PF04262 Glutamate-cysteine ligase SH06_RS17875 PF09335 SNARE associated Golgi protein SH06_RS17880 PF13419 Haloacid dehalogenase-like hydrolase SH06_RS17915 PF02599 Global regulator protein family SH06_RS17920 PF01411 tRNA synthetases class II (A) SH06_RS17920 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SH06_RS17920 PF02272 DHHA1 domain SH06_RS17930 PF02631 RecX family SH06_RS17945 PF00302 Chloramphenicol acetyltransferase SH06_RS17950 PF02464 Competence-damaged protein SH06_RS17955 PF13406 Transglycosylase SLT domain SH06_RS17960 PF03608 PTS system enzyme II sorbitol-specific factor SH06_RS17965 PF03612 Sorbitol phosphotransferase enzyme II N-terminus SH06_RS17965 PF07663 Sorbitol phosphotransferase enzyme II C-terminus SH06_RS17970 PF03829 PTS system glucitol/sorbitol-specific IIA component SH06_RS17975 PF00106 short chain dehydrogenase SH06_RS17980 PF06923 Glucitol operon activator protein (GutM) SH06_RS17985 PF08220 DeoR-like helix-turn-helix domain SH06_RS17985 PF00455 DeoR C terminal sensor domain SH06_RS17990 PF00571 CBS domain SH06_RS17990 PF01380 SIS domain SH06_RS17995 PF01590 GAF domain SH06_RS17995 PF00158 Sigma-54 interaction domain SH06_RS18000 PF00753 Metallo-beta-lactamase superfamily SH06_RS18000 PF00301 Rubredoxin SH06_RS18000 PF00258 Flavodoxin SH06_RS18005 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH06_RS18005 PF18113 Rubredoxin binding C-terminal domain SH06_RS18010 PF07503 HypF finger SH06_RS18010 PF01300 Telomere recombination SH06_RS18010 PF17788 HypF Kae1-like domain SH06_RS18010 PF00708 Acylphosphatase SH06_RS18015 PF13247 4Fe-4S dicluster domain SH06_RS18015 PF12800 4Fe-4S binding domain SH06_RS18020 PF00356 Bacterial regulatory proteins, lacI family SH06_RS18025 PF02378 Phosphotransferase system, EIIC SH06_RS18025 PF00367 phosphotransferase system, EIIB SH06_RS18030 PF00232 Glycosyl hydrolase family 1 SH06_RS18035 PF01750 Hydrogenase maturation protease SH06_RS18040 PF07450 Formate hydrogenlyase maturation protein HycH SH06_RS18045 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH06_RS18050 PF12838 4Fe-4S dicluster domain SH06_RS18055 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH06_RS18055 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH06_RS18055 PF00374 Nickel-dependent hydrogenase SH06_RS18060 PF00146 NADH dehydrogenase SH06_RS18065 PF00361 Proton-conducting membrane transporter SH06_RS18070 PF13247 4Fe-4S dicluster domain SH06_RS18080 PF11046 Transcriptional repressor of hyc and hyp operons SH06_RS18085 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SH06_RS18090 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH06_RS18095 PF01455 HupF/HypC family SH06_RS18100 PF01924 Hydrogenase formation hypA family SH06_RS18105 PF02769 AIR synthase related protein, C-terminal domain SH06_RS18105 PF00586 AIR synthase related protein, N-terminal domain SH06_RS18110 PF00158 Sigma-54 interaction domain SH06_RS18110 PF01590 GAF domain SH06_RS18115 PF11756 Nitrous oxide-stimulated promoter SH06_RS18120 PF01624 MutS domain I SH06_RS18120 PF05188 MutS domain II SH06_RS18120 PF05190 MutS family domain IV SH06_RS18120 PF05192 MutS domain III SH06_RS18120 PF00488 MutS domain V SH06_RS18125 PF00149 Calcineurin-like phosphoesterase SH06_RS18130 PF00455 DeoR C terminal sensor domain SH06_RS18130 PF08220 DeoR-like helix-turn-helix domain SH06_RS18135 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH06_RS18135 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH06_RS18140 PF17042 Nucleotide-binding C-terminal domain SH06_RS18140 PF07005 Sugar-binding N-terminal domain SH06_RS18145 PF00596 Class II Aldolase and Adducin N-terminal domain SH06_RS18150 PF01261 Xylose isomerase-like TIM barrel SH06_RS18155 PF02447 GntP family permease SH06_RS18160 PF04539 Sigma-70 region 3 SH06_RS18160 PF00140 Sigma-70 factor, region 1.2 SH06_RS18160 PF04542 Sigma-70 region 2 SH06_RS18160 PF04545 Sigma-70, region 4 SH06_RS18165 PF01551 Peptidase family M23 SH06_RS18165 PF01476 LysM domain SH06_RS18175 PF01975 Survival protein SurE SH06_RS18180 PF01142 tRNA pseudouridine synthase D (TruD) SH06_RS18185 PF02542 YgbB family SH06_RS18190 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SH06_RS18195 PF04977 Septum formation initiator SH06_RS18200 PF12084 Protein of unknown function (DUF3561) SH06_RS18210 PF00009 Elongation factor Tu GTP binding domain SH06_RS18215 PF01507 Phosphoadenosine phosphosulfate reductase family SH06_RS18220 PF04389 Peptidase family M28 SH06_RS18225 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) SH06_RS18230 PF01867 CRISPR associated protein Cas1 SH06_RS18235 PF08798 CRISPR associated protein SH06_RS18240 PF09704 CRISPR-associated protein (Cas_Cas5) SH06_RS18245 PF09344 CT1975-like protein SH06_RS18250 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) SH06_RS18255 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) SH06_RS18260 PF00271 Helicase conserved C-terminal domain SH06_RS18260 PF18019 HD domain SH06_RS18260 PF00270 DEAD/DEAH box helicase SH06_RS18265 PF01507 Phosphoadenosine phosphosulfate reductase family SH06_RS18270 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SH06_RS18270 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SH06_RS18275 PF00667 FAD binding domain SH06_RS18275 PF00175 Oxidoreductase NAD-binding domain SH06_RS18275 PF00258 Flavodoxin SH06_RS18280 PF01242 6-pyruvoyl tetrahydropterin synthase SH06_RS18285 PF01266 FAD dependent oxidoreductase SH06_RS18295 PF04309 Glycerol-3-phosphate responsive antiterminator SH06_RS18300 PF00766 Electron transfer flavoprotein FAD-binding domain SH06_RS18300 PF01012 Electron transfer flavoprotein domain SH06_RS18305 PF01012 Electron transfer flavoprotein domain SH06_RS18310 PF00083 Sugar (and other) transporter SH06_RS18315 PF02913 FAD linked oxidases, C-terminal domain SH06_RS18315 PF01565 FAD binding domain SH06_RS18325 PF07690 Major Facilitator Superfamily SH06_RS18330 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH06_RS18330 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH06_RS18335 PF04055 Radical SAM superfamily SH06_RS18345 PF04536 TPM domain SH06_RS18350 PF03952 Enolase, N-terminal domain SH06_RS18350 PF00113 Enolase, C-terminal TIM barrel domain SH06_RS18355 PF00117 Glutamine amidotransferase class-I SH06_RS18355 PF06418 CTP synthase N-terminus SH06_RS18360 PF03819 MazG nucleotide pyrophosphohydrolase domain SH06_RS18365 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SH06_RS18370 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SH06_RS18375 PF02824 TGS domain SH06_RS18375 PF04607 Region found in RelA / SpoT proteins SH06_RS18375 PF13291 ACT domain SH06_RS18380 PF01938 TRAM domain SH06_RS18380 PF05958 tRNA (Uracil-5-)-methyltransferase SH06_RS18385 PF00672 HAMP domain SH06_RS18385 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS18385 PF01627 Hpt domain SH06_RS18385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS18385 PF00072 Response regulator receiver domain SH06_RS18385 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SH06_RS18390 PF13378 Enolase C-terminal domain-like SH06_RS18395 PF13378 Enolase C-terminal domain-like SH06_RS18395 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH06_RS18400 PF07690 Major Facilitator Superfamily SH06_RS18405 PF00258 Flavodoxin SH06_RS18410 PF00849 RNA pseudouridylate synthase SH06_RS18415 PF04287 tRNA pseudouridine synthase C SH06_RS18425 PF07348 Syd protein (SUKH-2) SH06_RS18430 PF14489 QueF-like protein SH06_RS18430 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term SH06_RS18435 PF11892 Domain of unknown function (DUF3412) SH06_RS18435 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases SH06_RS18435 PF03641 Possible lysine decarboxylase SH06_RS18445 PF03313 Serine dehydratase alpha chain SH06_RS18445 PF03315 Serine dehydratase beta chain SH06_RS18450 PF01367 5'-3' exonuclease, C-terminal SAM fold SH06_RS18450 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SH06_RS18455 PF00465 Iron-containing alcohol dehydrogenase SH06_RS18460 PF00596 Class II Aldolase and Adducin N-terminal domain SH06_RS18465 PF07690 Major Facilitator Superfamily SH06_RS18470 PF07882 L-fucose isomerase, second N-terminal domain SH06_RS18470 PF07881 L-fucose isomerase, first N-terminal domain SH06_RS18470 PF02952 L-fucose isomerase, C-terminal domain SH06_RS18475 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH06_RS18475 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH06_RS18480 PF05025 RbsD / FucU transport protein family SH06_RS18485 PF08220 DeoR-like helix-turn-helix domain SH06_RS18485 PF00455 DeoR C terminal sensor domain SH06_RS18490 PF01728 FtsJ-like methyltransferase SH06_RS18490 PF18125 RlmM ferredoxin-like domain SH06_RS18495 PF04241 Protein of unknown function (DUF423) SH06_RS18500 PF03466 LysR substrate binding domain SH06_RS18500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS18505 PF06004 Bacterial protein of unknown function (DUF903) SH06_RS18510 PF00266 Aminotransferase class-V SH06_RS18515 PF02657 Fe-S metabolism associated domain SH06_RS18520 PF00899 ThiF family SH06_RS18525 PF06725 3D domain SH06_RS18525 PF03562 MltA specific insert domain SH06_RS18545 PF01520 N-acetylmuramoyl-L-alanine amidase SH06_RS18545 PF11741 AMIN domain SH06_RS18550 PF00583 Acetyltransferase (GNAT) family SH06_RS18550 PF00696 Amino acid kinase family SH06_RS18560 PF00580 UvrD/REP helicase N-terminal domain SH06_RS18560 PF13361 UvrD-like helicase C-terminal domain SH06_RS18560 PF12705 PD-(D/E)XK nuclease superfamily SH06_RS18565 PF00675 Insulinase (Peptidase family M16) SH06_RS18565 PF05193 Peptidase M16 inactive domain SH06_RS18565 PF16187 Middle or third domain of peptidase_M16 SH06_RS18570 PF17946 RecC C-terminal domain SH06_RS18575 PF07963 Prokaryotic N-terminal methylation motif SH06_RS18575 PF12528 Type II secretion prepilin peptidase dependent protein C SH06_RS18580 PF10713 Protein of unknown function (DUF2509) SH06_RS18585 PF07963 Prokaryotic N-terminal methylation motif SH06_RS18590 PF07963 Prokaryotic N-terminal methylation motif SH06_RS18595 PF00303 Thymidylate synthase SH06_RS18600 PF01790 Prolipoprotein diacylglyceryl transferase SH06_RS18605 PF02896 PEP-utilising enzyme, TIM barrel domain SH06_RS18605 PF00391 PEP-utilising enzyme, mobile domain SH06_RS18605 PF05524 PEP-utilising enzyme, N-terminal SH06_RS18605 PF01590 GAF domain SH06_RS18610 PF00293 NUDIX domain SH06_RS18625 PF02976 DNA mismatch repair enzyme MutH SH06_RS18630 PF03741 Integral membrane protein TerC family SH06_RS18635 PF06004 Bacterial protein of unknown function (DUF903) SH06_RS18640 PF00248 Aldo/keto reductase family SH06_RS18645 PF07690 Major Facilitator Superfamily SH06_RS18650 PF00501 AMP-binding enzyme SH06_RS18650 PF01553 Acyltransferase SH06_RS18655 PF00356 Bacterial regulatory proteins, lacI family SH06_RS18660 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SH06_RS18660 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SH06_RS18665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS18665 PF03466 LysR substrate binding domain SH06_RS18670 PF01177 Asp/Glu/Hydantoin racemase SH06_RS18675 PF00083 Sugar (and other) transporter SH06_RS18685 PF04962 KduI/IolB family SH06_RS18690 PF00108 Thiolase, N-terminal domain SH06_RS18690 PF02803 Thiolase, C-terminal domain SH06_RS18695 PF03222 Tryptophan/tyrosine permease family SH06_RS18700 PF00196 Bacterial regulatory proteins, luxR family SH06_RS18705 PF00486 Transcriptional regulatory protein, C terminal SH06_RS18725 PF07720 Tetratricopeptide repeat SH06_RS18730 PF00486 Transcriptional regulatory protein, C terminal SH06_RS18740 PF01464 Transglycosylase SLT domain SH06_RS18745 PF00196 Bacterial regulatory proteins, luxR family SH06_RS18745 PF00072 Response regulator receiver domain SH06_RS18750 PF00072 Response regulator receiver domain SH06_RS18750 PF00196 Bacterial regulatory proteins, luxR family SH06_RS18765 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) SH06_RS18770 PF00665 Integrase core domain SH06_RS18770 PF13276 HTH-like domain SH06_RS18775 PF01527 Transposase SH06_RS18795 PF01551 Peptidase family M23 SH06_RS18795 PF01476 LysM domain SH06_RS18800 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH06_RS18800 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH06_RS18805 PF03450 CO dehydrogenase flavoprotein C-terminal domain SH06_RS18805 PF00941 FAD binding domain in molybdopterin dehydrogenase SH06_RS18810 PF00111 2Fe-2S iron-sulfur cluster binding domain SH06_RS18810 PF01799 [2Fe-2S] binding domain SH06_RS18815 PF13188 PAS domain SH06_RS18815 PF00158 Sigma-54 interaction domain SH06_RS18815 PF02954 Bacterial regulatory protein, Fis family SH06_RS18820 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH06_RS18820 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH06_RS18825 PF00291 Pyridoxal-phosphate dependent enzyme SH06_RS18830 PF01546 Peptidase family M20/M25/M40 SH06_RS18830 PF07687 Peptidase dimerisation domain SH06_RS18835 PF01979 Amidohydrolase family SH06_RS18840 PF00696 Amino acid kinase family SH06_RS18845 PF02625 XdhC and CoxI family SH06_RS18845 PF13478 XdhC Rossmann domain SH06_RS18855 PF12804 MobA-like NTP transferase domain SH06_RS18860 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH06_RS18860 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH06_RS18865 PF01979 Amidohydrolase family SH06_RS18870 PF00941 FAD binding domain in molybdopterin dehydrogenase SH06_RS18875 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH06_RS18875 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH06_RS18875 PF01799 [2Fe-2S] binding domain SH06_RS18880 PF00860 Permease family SH06_RS18885 PF01979 Amidohydrolase family SH06_RS18890 PF00860 Permease family SH06_RS18895 PF13247 4Fe-4S dicluster domain SH06_RS18900 PF13247 4Fe-4S dicluster domain SH06_RS18900 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH06_RS18900 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH06_RS18910 PF00860 Permease family SH06_RS18920 PF00293 NUDIX domain SH06_RS18925 PF01336 OB-fold nucleic acid binding domain SH06_RS18925 PF00152 tRNA synthetases class II (D, K and N) SH06_RS18930 PF03462 PCRF domain SH06_RS18930 PF00472 RF-1 domain SH06_RS18935 PF17768 RecJ OB domain SH06_RS18935 PF01368 DHH family SH06_RS18935 PF02272 DHHA1 domain SH06_RS18940 PF10411 Disulfide bond isomerase protein N-terminus SH06_RS18940 PF13098 Thioredoxin-like domain SH06_RS18945 PF02899 Phage integrase, N-terminal SAM-like domain SH06_RS18945 PF00589 Phage integrase family SH06_RS18950 PF00258 Flavodoxin SH06_RS18955 PF07254 Membrane-bound toxin component of toxin-antitoxin system SH06_RS18960 PF03937 Flavinator of succinate dehydrogenase SH06_RS18965 PF01571 Aminomethyltransferase folate-binding domain SH06_RS18970 PF03006 Haemolysin-III related SH06_RS18975 PF04266 ASCH domain SH06_RS18980 PF00232 Glycosyl hydrolase family 1 SH06_RS18990 PF02347 Glycine cleavage system P-protein SH06_RS18995 PF01597 Glycine cleavage H-protein SH06_RS19000 PF08669 Glycine cleavage T-protein C-terminal barrel domain SH06_RS19000 PF01571 Aminomethyltransferase folate-binding domain SH06_RS19005 PF01494 FAD binding domain SH06_RS19010 PF01494 FAD binding domain SH06_RS19015 PF05195 Aminopeptidase P, N-terminal domain SH06_RS19015 PF00557 Metallopeptidase family M24 SH06_RS19020 PF03695 Uncharacterised protein family (UPF0149) SH06_RS19025 PF05164 Cell division protein ZapA SH06_RS19030 PF01812 5-formyltetrahydrofolate cyclo-ligase family SH06_RS19035 PF01842 ACT domain SH06_RS19035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH06_RS19035 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH06_RS19040 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SH06_RS19045 PF03466 LysR substrate binding domain SH06_RS19050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS19050 PF03466 LysR substrate binding domain SH06_RS19055 PF02310 B12 binding domain SH06_RS19055 PF01642 Methylmalonyl-CoA mutase SH06_RS19065 PF00378 Enoyl-CoA hydratase/isomerase SH06_RS19070 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain SH06_RS19070 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain SH06_RS19075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS19075 PF03466 LysR substrate binding domain SH06_RS19080 PF04402 Protein of unknown function (DUF541) SH06_RS19085 PF01810 LysE type translocator SH06_RS19090 PF05552 Conserved TM helix SH06_RS19090 PF00924 Mechanosensitive ion channel SH06_RS19095 PF01116 Fructose-bisphosphate aldolase class-II SH06_RS19100 PF00162 Phosphoglycerate kinase SH06_RS19105 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH06_RS19105 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH06_RS19115 PF05068 Mannitol repressor SH06_RS19120 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded SH06_RS19125 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS19125 PF00107 Zinc-binding dehydrogenase SH06_RS19130 PF02378 Phosphotransferase system, EIIC SH06_RS19130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH06_RS19135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH06_RS19140 PF00456 Transketolase, thiamine diphosphate binding domain SH06_RS19140 PF02780 Transketolase, C-terminal domain SH06_RS19140 PF02779 Transketolase, pyrimidine binding domain SH06_RS19145 PF01435 Peptidase family M48 SH06_RS19150 PF00491 Arginase family SH06_RS19155 PF17810 Arginine decarboxylase helical bundle domain SH06_RS19155 PF17944 Arginine decarboxylase C-terminal helical extension SH06_RS19155 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SH06_RS19160 PF11036 Virulence promoting factor SH06_RS19165 PF17430 Uncharacterized YqgC-like SH06_RS19175 PF00438 S-adenosylmethionine synthetase, N-terminal domain SH06_RS19175 PF02772 S-adenosylmethionine synthetase, central domain SH06_RS19175 PF02773 S-adenosylmethionine synthetase, C-terminal domain SH06_RS19185 PF10263 SprT-like family SH06_RS19185 PF17283 SprT-like zinc ribbon domain SH06_RS19190 PF04231 Endonuclease I SH06_RS19195 PF04452 RNA methyltransferase SH06_RS19200 PF02951 Prokaryotic glutathione synthetase, N-terminal domain SH06_RS19200 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain SH06_RS19205 PF02622 Uncharacterized ACR, COG1678 SH06_RS19210 PF03652 Holliday junction resolvase SH06_RS19215 PF00437 Type II/IV secretion system protein SH06_RS19220 PF01168 Alanine racemase, N-terminal domain SH06_RS19225 PF02325 YGGT family SH06_RS19230 PF02594 Uncharacterised ACR, YggU family COG1872 SH06_RS19235 PF01725 Ham1 family SH06_RS19240 PF04055 Radical SAM superfamily SH06_RS19240 PF06969 HemN C-terminal domain SH06_RS19245 PF06717 Protein of unknown function (DUF1202) SH06_RS19250 PF17763 Glutaminase/Asparaginase C-terminal domain SH06_RS19250 PF00710 Asparaginase, N-terminal SH06_RS19255 PF11101 Protein of unknown function (DUF2884) SH06_RS19265 PF04320 Protein with unknown function (DUF469) SH06_RS19270 PF02390 Putative methyltransferase SH06_RS19275 PF00730 HhH-GPD superfamily base excision DNA repair protein SH06_RS19275 PF14815 NUDIX domain SH06_RS19275 PF10576 Iron-sulfur binding domain of endonuclease III SH06_RS19275 PF00633 Helix-hairpin-helix motif SH06_RS19280 PF04362 Bacterial Fe(2+) trafficking SH06_RS19285 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain SH06_RS19285 PF01464 Transglycosylase SLT domain SH06_RS19290 PF03825 Nucleoside H+ symporter SH06_RS19295 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH06_RS19295 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH06_RS19295 PF01276 Orn/Lys/Arg decarboxylase, major domain SH06_RS19300 PF04474 Protein of unknown function (DUF554) SH06_RS19310 PF04612 Type II secretion system (T2SS), protein M SH06_RS19315 PF12693 GspL periplasmic domain SH06_RS19320 PF11356 Type II secretion system protein C SH06_RS19325 PF16549 Type II secretion system (T2SS) pilotin, S protein SH06_RS19330 PF06750 Bacterial Peptidase A24 N-terminal domain SH06_RS19330 PF01478 Type IV leader peptidase family SH06_RS19335 PF13402 Peptidase M60, enhancin and enhancin-like SH06_RS19335 PF17291 N-terminal domain of M60-like peptidases SH06_RS19335 PF13322 Domain of unknown function (DUF4092) SH06_RS19345 PF02652 L-lactate permease SH06_RS19350 PF01274 Malate synthase SH06_RS19355 PF03928 Haem-degrading SH06_RS19360 PF02754 Cysteine-rich domain SH06_RS19360 PF13183 4Fe-4S dicluster domain SH06_RS19365 PF01565 FAD binding domain SH06_RS19370 PF02913 FAD linked oxidases, C-terminal domain SH06_RS19370 PF01565 FAD binding domain SH06_RS19375 PF07729 FCD domain SH06_RS19375 PF00392 Bacterial regulatory proteins, gntR family SH06_RS19385 PF01609 Transposase DDE domain SH06_RS19385 PF05598 Transposase domain (DUF772) SH06_RS19390 PF01943 Polysaccharide biosynthesis protein SH06_RS19410 PF01384 Phosphate transporter family SH06_RS19415 PF03738 Glutathionylspermidine synthase preATP-grasp SH06_RS19415 PF05257 CHAP domain SH06_RS19420 PF02798 Glutathione S-transferase, N-terminal domain SH06_RS19425 PF01455 HupF/HypC family SH06_RS19430 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SH06_RS19435 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE SH06_RS19440 PF01750 Hydrogenase maturation protease SH06_RS19445 PF00374 Nickel-dependent hydrogenase SH06_RS19450 PF03916 Polysulphide reductase, NrfD SH06_RS19455 PF13247 4Fe-4S dicluster domain SH06_RS19460 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SH06_RS19460 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH06_RS19470 PF11115 Protein of unknown function (DUF2623) SH06_RS19480 PF00248 Aldo/keto reductase family SH06_RS19485 PF03350 Uncharacterized protein family, UPF0114 SH06_RS19495 PF02472 Biopolymer transport protein ExbD/TolR SH06_RS19500 PF01618 MotA/TolQ/ExbB proton channel family SH06_RS19510 PF01053 Cys/Met metabolism PLP-dependent enzyme SH06_RS19515 PF09335 SNARE associated Golgi protein SH06_RS19520 PF06719 AraC-type transcriptional regulator N-terminus SH06_RS19520 PF12833 Helix-turn-helix domain SH06_RS19530 PF00465 Iron-containing alcohol dehydrogenase SH06_RS19535 PF00248 Aldo/keto reductase family SH06_RS19540 PF12883 Protein of unknown function (DUF3828) SH06_RS19545 PF04728 Lipoprotein leucine-zipper SH06_RS19550 PF11842 Domain of unknown function (DUF3362) SH06_RS19550 PF04055 Radical SAM superfamily SH06_RS19550 PF08497 Radical SAM N-terminal SH06_RS19555 PF07731 Multicopper oxidase SH06_RS19555 PF07732 Multicopper oxidase SH06_RS19555 PF00394 Multicopper oxidase SH06_RS19560 PF01553 Acyltransferase SH06_RS19565 PF03989 DNA gyrase C-terminal domain, beta-propeller SH06_RS19565 PF00521 DNA gyrase/topoisomerase IV, subunit A SH06_RS19570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH06_RS19575 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA SH06_RS19580 PF15723 Motility quorum-sensing regulator, toxin of MqsA SH06_RS19585 PF06445 GyrI-like small molecule binding domain SH06_RS19590 PF04076 Bacterial OB fold (BOF) protein SH06_RS19595 PF00486 Transcriptional regulatory protein, C terminal SH06_RS19595 PF00072 Response regulator receiver domain SH06_RS19600 PF08521 Two-component sensor kinase N-terminal SH06_RS19600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS19600 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS19605 PF10840 Protein of unknown function (DUF2645) SH06_RS19610 PF02525 Flavodoxin-like fold SH06_RS19615 PF03992 Antibiotic biosynthesis monooxygenase SH06_RS19620 PF01751 Toprim domain SH06_RS19620 PF00986 DNA gyrase B subunit, carboxyl terminus SH06_RS19620 PF00204 DNA gyrase B SH06_RS19620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS19625 PF05728 Uncharacterised protein family (UPF0227) SH06_RS19630 PF00149 Calcineurin-like phosphoesterase SH06_RS19635 PF06853 Protein of unknown function (DUF1249) SH06_RS19640 PF00293 NUDIX domain SH06_RS19645 PF02321 Outer membrane efflux protein SH06_RS19655 PF06693 Protein of unknown function (DUF1190) SH06_RS19660 PF03738 Glutathionylspermidine synthase preATP-grasp SH06_RS19665 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SH06_RS19670 PF02535 ZIP Zinc transporter SH06_RS19680 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SH06_RS19685 PF04380 Membrane fusogenic activity SH06_RS19690 PF00419 Fimbrial protein SH06_RS19695 PF01527 Transposase SH06_RS19700 PF00665 Integrase core domain SH06_RS19700 PF13276 HTH-like domain SH06_RS19705 PF00577 Outer membrane usher protein SH06_RS19705 PF13954 PapC N-terminal domain SH06_RS19705 PF13953 PapC C-terminal domain SH06_RS19710 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH06_RS19710 PF02753 Pili assembly chaperone PapD, C-terminal domain SH06_RS19720 PF08971 Glycogen synthesis protein SH06_RS19725 PF07290 Protein of unknown function (DUF1449) SH06_RS19730 PF01145 SPFH domain / Band 7 family SH06_RS19730 PF15975 Flotillin SH06_RS19745 PF00294 pfkB family carbohydrate kinase SH06_RS19745 PF01467 Cytidylyltransferase-like SH06_RS19750 PF03710 Glutamate-ammonia ligase adenylyltransferase SH06_RS19750 PF08335 GlnD PII-uridylyltransferase SH06_RS19755 PF01928 CYTH domain SH06_RS19765 PF08239 Bacterial SH3 domain SH06_RS19770 PF01966 HD domain SH06_RS19770 PF01743 Poly A polymerase head domain SH06_RS19770 PF12627 Probable RNA and SrmB- binding site of polymerase A SH06_RS19775 PF02673 Bacitracin resistance protein BacA SH06_RS19780 PF02152 Dihydroneopterin aldolase SH06_RS19785 PF02660 Glycerol-3-phosphate acyltransferase SH06_RS19790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS19790 PF03466 LysR substrate binding domain SH06_RS19795 PF05681 Fumarate hydratase (Fumerase) SH06_RS19805 PF00939 Sodium:sulfate symporter transmembrane region SH06_RS19810 PF00814 Glycoprotease family SH06_RS19815 PF01165 Ribosomal protein S21 SH06_RS19820 PF01807 CHC2 zinc finger SH06_RS19820 PF08275 DNA primase catalytic core, N-terminal domain SH06_RS19820 PF08278 DNA primase DnaG DnaB-binding SH06_RS19820 PF10410 DnaB-helicase binding domain of primase SH06_RS19825 PF04546 Sigma-70, non-essential region SH06_RS19825 PF03979 Sigma-70 factor, region 1.1 SH06_RS19825 PF00140 Sigma-70 factor, region 1.2 SH06_RS19825 PF04539 Sigma-70 region 3 SH06_RS19825 PF04545 Sigma-70, region 4 SH06_RS19825 PF04542 Sigma-70 region 2 SH06_RS19830 PF03167 Uracil DNA glycosylase superfamily SH06_RS19840 PF04954 Siderophore-interacting protein SH06_RS19840 PF08021 Siderophore-interacting FAD-binding domain SH06_RS19845 PF03551 Transcriptional regulator PadR-like family SH06_RS19850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH06_RS19850 PF08447 PAS fold SH06_RS19855 PF00202 Aminotransferase class-III SH06_RS19860 PF01588 Putative tRNA binding domain SH06_RS19865 PF00356 Bacterial regulatory proteins, lacI family SH06_RS19870 PF00703 Glycosyl hydrolases family 2 SH06_RS19870 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH06_RS19870 PF16353 Domain of unknown function(DUF4981) SH06_RS19870 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH06_RS19870 PF02929 Beta galactosidase small chain SH06_RS19875 PF04074 YhcH/YjgK/YiaL SH06_RS19880 PF13520 Amino acid permease SH06_RS19890 PF01204 Trehalase SH06_RS19895 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SH06_RS19895 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH06_RS19900 PF01381 Helix-turn-helix SH06_RS19905 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system SH06_RS19915 PF05175 Methyltransferase small domain SH06_RS19920 PF01863 Protein of unknown function DUF45 SH06_RS19925 PF02698 DUF218 domain SH06_RS19930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH06_RS19935 PF03741 Integral membrane protein TerC family SH06_RS19940 PF00375 Sodium:dicarboxylate symporter family SH06_RS19945 PF10688 Bacterial inner membrane protein SH06_RS19950 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus SH06_RS19950 PF08666 SAF domain SH06_RS19955 PF02614 Glucuronate isomerase SH06_RS19960 PF07690 Major Facilitator Superfamily SH06_RS19965 PF07729 FCD domain SH06_RS19965 PF00392 Bacterial regulatory proteins, gntR family SH06_RS19970 PF09335 SNARE associated Golgi protein SH06_RS19975 PF13721 SecD export protein N-terminal TM region SH06_RS19980 PF06476 Protein of unknown function (DUF1090) SH06_RS19985 PF05957 Bacterial protein of unknown function (DUF883) SH06_RS19990 PF07332 Putative Actinobacterial Holin-X, holin superfamily III SH06_RS19995 PF13997 YqjK-like protein SH06_RS20000 PF07681 DoxX SH06_RS20005 PF13409 Glutathione S-transferase, N-terminal domain SH06_RS20010 PF05656 Protein of unknown function (DUF805) SH06_RS20015 PF05656 Protein of unknown function (DUF805) SH06_RS20020 PF03466 LysR substrate binding domain SH06_RS20020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS20025 PF17954 Quercetinase C-terminal cupin domain SH06_RS20025 PF02678 Pirin SH06_RS20035 PF03313 Serine dehydratase alpha chain SH06_RS20045 PF03315 Serine dehydratase beta chain SH06_RS20045 PF03313 Serine dehydratase alpha chain SH06_RS20050 PF01042 Endoribonuclease L-PSP SH06_RS20055 PF02901 Pyruvate formate lyase-like SH06_RS20055 PF01228 Glycine radical SH06_RS20065 PF05598 Transposase domain (DUF772) SH06_RS20065 PF01609 Transposase DDE domain SH06_RS20070 PF00871 Acetokinase family SH06_RS20075 PF03222 Tryptophan/tyrosine permease family SH06_RS20080 PF00291 Pyridoxal-phosphate dependent enzyme SH06_RS20085 PF03466 LysR substrate binding domain SH06_RS20085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS20105 PF02595 Glycerate kinase family SH06_RS20110 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH06_RS20110 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH06_RS20115 PF03328 HpcH/HpaI aldolase/citrate lyase family SH06_RS20120 PF07690 Major Facilitator Superfamily SH06_RS20125 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus SH06_RS20125 PF08666 SAF domain SH06_RS20130 PF15937 prlF antitoxin for toxin YhaV_toxin SH06_RS20135 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system SH06_RS20140 PF08220 DeoR-like helix-turn-helix domain SH06_RS20140 PF00455 DeoR C terminal sensor domain SH06_RS20145 PF08013 Tagatose 6 phosphate kinase SH06_RS20150 PF03830 PTS system sorbose subfamily IIB component SH06_RS20155 PF03609 PTS system sorbose-specific iic component SH06_RS20160 PF01979 Amidohydrolase family SH06_RS20165 PF01380 SIS domain SH06_RS20170 PF01116 Fructose-bisphosphate aldolase class-II SH06_RS20175 PF03830 PTS system sorbose subfamily IIB component SH06_RS20180 PF03609 PTS system sorbose-specific iic component SH06_RS20185 PF03613 PTS system mannose/fructose/sorbose family IID component SH06_RS20190 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH06_RS20195 PF00419 Fimbrial protein SH06_RS20200 PF02753 Pili assembly chaperone PapD, C-terminal domain SH06_RS20200 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH06_RS20205 PF13954 PapC N-terminal domain SH06_RS20205 PF13953 PapC C-terminal domain SH06_RS20205 PF00577 Outer membrane usher protein SH06_RS20210 PF00419 Fimbrial protein SH06_RS20215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH06_RS20220 PF04348 LppC putative lipoprotein SH06_RS20225 PF02021 Uncharacterised protein family UPF0102 SH06_RS20230 PF13580 SIS domain SH06_RS20235 PF04972 BON domain SH06_RS20240 PF03773 Predicted permease SH06_RS20245 PF13460 NAD(P)H-binding SH06_RS20250 PF01965 DJ-1/PfpI family SH06_RS20260 PF01541 GIY-YIG catalytic domain SH06_RS20265 PF13508 Acetyltransferase (GNAT) domain SH06_RS20270 PF02036 SCP-2 sterol transfer family SH06_RS20275 PF01136 Peptidase family U32 SH06_RS20280 PF01136 Peptidase family U32 SH06_RS20285 PF00296 Luciferase-like monooxygenase SH06_RS20290 PF03222 Tryptophan/tyrosine permease family SH06_RS20300 PF03880 DbpA RNA binding domain SH06_RS20300 PF00271 Helicase conserved C-terminal domain SH06_RS20300 PF12343 Cold shock protein DEAD box A SH06_RS20300 PF00270 DEAD/DEAH box helicase SH06_RS20305 PF07719 Tetratricopeptide repeat SH06_RS20305 PF13181 Tetratricopeptide repeat SH06_RS20310 PF00575 S1 RNA binding domain SH06_RS20310 PF03725 3' exoribonuclease family, domain 2 SH06_RS20310 PF01138 3' exoribonuclease family, domain 1 SH06_RS20310 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SH06_RS20310 PF00013 KH domain SH06_RS20315 PF00312 Ribosomal protein S15 SH06_RS20320 PF01509 TruB family pseudouridylate synthase (N terminal domain) SH06_RS20320 PF16198 tRNA pseudouridylate synthase B C-terminal domain SH06_RS20320 PF09157 Pseudouridine synthase II TruB, C-terminal SH06_RS20325 PF02033 Ribosome-binding factor A SH06_RS20330 PF00009 Elongation factor Tu GTP binding domain SH06_RS20330 PF11987 Translation-initiation factor 2 SH06_RS20330 PF08364 Bacterial translation initiation factor IF-2 associated region SH06_RS20330 PF04760 Translation initiation factor IF-2, N-terminal region SH06_RS20335 PF13184 NusA-like KH domain SH06_RS20335 PF08529 NusA N-terminal domain SH06_RS20335 PF00575 S1 RNA binding domain SH06_RS20340 PF17384 RimP C-terminal SH3 domain SH06_RS20340 PF02576 RimP N-terminal domain SH06_RS20350 PF00764 Arginosuccinate synthase SH06_RS20355 PF00884 Sulfatase SH06_RS20365 PF03840 Preprotein translocase SecG subunit SH06_RS20370 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH06_RS20370 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH06_RS20370 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH06_RS20370 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH06_RS20375 PF00809 Pterin binding enzyme SH06_RS20380 PF01434 Peptidase family M41 SH06_RS20380 PF06480 FtsH Extracellular SH06_RS20380 PF17862 AAA+ lid domain SH06_RS20380 PF00004 ATPase family associated with various cellular activities (AAA) SH06_RS20385 PF01728 FtsJ-like methyltransferase SH06_RS20390 PF01985 CRS1 / YhbY (CRM) domain SH06_RS20395 PF03449 Transcription elongation factor, N-terminal SH06_RS20395 PF01272 Transcription elongation factor, GreA/GreB, C-term SH06_RS20400 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family SH06_RS20405 PF01018 GTP1/OBG SH06_RS20405 PF01926 50S ribosome-binding GTPase SH06_RS20410 PF00892 EamA-like transporter family SH06_RS20415 PF01016 Ribosomal L27 protein SH06_RS20420 PF00829 Ribosomal prokaryotic L21 protein SH06_RS20425 PF00348 Polyprenyl synthetase SH06_RS20430 PF13693 Winged helix-turn-helix DNA-binding SH06_RS20435 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SH06_RS20440 PF01722 BolA-like protein SH06_RS20445 PF13466 STAS domain SH06_RS20450 PF05494 MlaC protein SH06_RS20455 PF02470 MlaD protein SH06_RS20460 PF02405 Permease MlaE SH06_RS20465 PF00005 ABC transporter SH06_RS20470 PF01699 Sodium/calcium exchanger protein SH06_RS20475 PF00571 CBS domain SH06_RS20475 PF01380 SIS domain SH06_RS20485 PF06835 Lipopolysaccharide-assembly, LptC-related SH06_RS20490 PF03968 OstA-like protein SH06_RS20495 PF00005 ABC transporter SH06_RS20495 PF12399 Branched-chain amino acid ATP-binding cassette transporter SH06_RS20500 PF00309 Sigma-54 factor, Activator interacting domain (AID) SH06_RS20500 PF04552 Sigma-54, DNA binding domain SH06_RS20500 PF04963 Sigma-54 factor, core binding domain SH06_RS20505 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SH06_RS20510 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH06_RS20515 PF03668 P-loop ATPase protein family SH06_RS20520 PF00381 PTS HPr component phosphorylation site SH06_RS20525 PF10707 PhoP regulatory network protein YrbL SH06_RS20530 PF01609 Transposase DDE domain SH06_RS20530 PF05598 Transposase domain (DUF772) SH06_RS20540 PF06551 Protein of unknown function (DUF1120) SH06_RS20545 PF17761 DUF1016 N-terminal domain SH06_RS20545 PF06250 YhcG PDDEXK nuclease domain SH06_RS20550 PF04074 YhcH/YjgK/YiaL SH06_RS20555 PF00480 ROK family SH06_RS20560 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SH06_RS20565 PF07690 Major Facilitator Superfamily SH06_RS20570 PF00701 Dihydrodipicolinate synthetase family SH06_RS20575 PF07729 FCD domain SH06_RS20575 PF00392 Bacterial regulatory proteins, gntR family SH06_RS20580 PF03606 C4-dicarboxylate anaerobic carrier SH06_RS20585 PF04386 Stringent starvation protein B SH06_RS20590 PF02798 Glutathione S-transferase, N-terminal domain SH06_RS20590 PF00043 Glutathione S-transferase, C-terminal domain SH06_RS20595 PF00380 Ribosomal protein S9/S16 SH06_RS20600 PF00572 Ribosomal protein L13 SH06_RS20605 PF03969 AFG1-like ATPase SH06_RS20610 PF06295 Protein of unknown function (DUF1043) SH06_RS20615 PF13180 PDZ domain SH06_RS20615 PF00595 PDZ domain SH06_RS20620 PF13180 PDZ domain SH06_RS20625 PF00056 lactate/malate dehydrogenase, NAD binding domain SH06_RS20625 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SH06_RS20630 PF01316 Arginine repressor, DNA binding domain SH06_RS20630 PF02863 Arginine repressor, C-terminal domain SH06_RS20635 PF07338 Protein of unknown function (DUF1471) SH06_RS20640 PF01337 Barstar (barnase inhibitor) SH06_RS20645 PF04632 Fusaric acid resistance protein family SH06_RS20650 PF13533 Biotin-lipoyl like SH06_RS20655 PF07869 Protein of unknown function (DUF1656) SH06_RS20660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS20660 PF03466 LysR substrate binding domain SH06_RS20665 PF01523 Putative modulator of DNA gyrase SH06_RS20670 PF13116 Protein of unknown function SH06_RS20670 PF13502 AsmA-like C-terminal region SH06_RS20675 PF00575 S1 RNA binding domain SH06_RS20675 PF10150 Ribonuclease E/G family SH06_RS20680 PF02545 Maf-like protein SH06_RS20685 PF04093 rod shape-determining protein MreD SH06_RS20690 PF04085 rod shape-determining protein MreC SH06_RS20705 PF17157 Gammaproteobacterial periplasmic sensor domain SH06_RS20705 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS20705 PF00563 EAL domain SH06_RS20710 PF00107 Zinc-binding dehydrogenase SH06_RS20710 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS20725 PF01794 Ferric reductase like transmembrane component SH06_RS20730 PF00364 Biotin-requiring enzyme SH06_RS20735 PF02785 Biotin carboxylase C-terminal domain SH06_RS20735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH06_RS20735 PF00289 Biotin carboxylase, N-terminal domain SH06_RS20740 PF06196 Protein of unknown function (DUF997) SH06_RS20745 PF00474 Sodium:solute symporter family SH06_RS20755 PF01207 Dihydrouridine synthase (Dus) SH06_RS20760 PF02954 Bacterial regulatory protein, Fis family SH06_RS20765 PF01555 DNA methylase SH06_RS20770 PF10831 Protein of unknown function (DUF2556) SH06_RS20775 PF00440 Bacterial regulatory proteins, tetR family SH06_RS20775 PF08361 MAATS-type transcriptional repressor, C-terminal region SH06_RS20780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH06_RS20780 PF00529 HlyD membrane-fusion protein of T1SS SH06_RS20785 PF00873 AcrB/AcrD/AcrF family SH06_RS20800 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH06_RS20805 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS20810 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS20815 PF00005 ABC transporter SH06_RS20855 PF00132 Bacterial transferase hexapeptide (six repeats) SH06_RS20860 PF07369 Protein of unknown function (DUF1488) SH06_RS20865 PF08501 Shikimate dehydrogenase substrate binding domain SH06_RS20865 PF01488 Shikimate / quinate 5-dehydrogenase SH06_RS20865 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SH06_RS20870 PF01300 Telomere recombination SH06_RS20875 PF01396 Topoisomerase DNA binding C4 zinc finger SH06_RS20880 PF04361 Protein of unknown function (DUF494) SH06_RS20885 PF02481 DNA recombination-mediator protein A SH06_RS20885 PF17782 DprA winged helix domain SH06_RS20890 PF01327 Polypeptide deformylase SH06_RS20895 PF00551 Formyl transferase SH06_RS20895 PF02911 Formyl transferase, C-terminal domain SH06_RS20900 PF01189 16S rRNA methyltransferase RsmB/F SH06_RS20900 PF01029 NusB family SH06_RS20905 PF02254 TrkA-N domain SH06_RS20905 PF02080 TrkA-C domain SH06_RS20910 PF01741 Large-conductance mechanosensitive channel, MscL SH06_RS20915 PF03889 Alternative ribosome-rescue factor A SH06_RS20920 PF13411 MerR HTH family regulatory protein SH06_RS20925 PF09350 Domain of unknown function (DUF1992) SH06_RS20930 PF01196 Ribosomal protein L17 SH06_RS20935 PF01000 RNA polymerase Rpb3/RpoA insert domain SH06_RS20935 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SH06_RS20935 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SH06_RS20940 PF01479 S4 domain SH06_RS20940 PF00163 Ribosomal protein S4/S9 N-terminal domain SH06_RS20945 PF00411 Ribosomal protein S11 SH06_RS20950 PF00416 Ribosomal protein S13/S18 SH06_RS20955 PF00444 Ribosomal protein L36 SH06_RS20960 PF00344 SecY translocase SH06_RS20965 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SH06_RS20970 PF00327 Ribosomal protein L30p/L7e SH06_RS20975 PF03719 Ribosomal protein S5, C-terminal domain SH06_RS20975 PF00333 Ribosomal protein S5, N-terminal domain SH06_RS20980 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SH06_RS20985 PF00347 Ribosomal protein L6 SH06_RS20990 PF00410 Ribosomal protein S8 SH06_RS20995 PF00253 Ribosomal protein S14p/S29e SH06_RS21000 PF00281 Ribosomal protein L5 SH06_RS21000 PF00673 ribosomal L5P family C-terminus SH06_RS21005 PF00467 KOW motif SH06_RS21005 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SH06_RS21010 PF00238 Ribosomal protein L14p/L23e SH06_RS21015 PF00366 Ribosomal protein S17 SH06_RS21020 PF00831 Ribosomal L29 protein SH06_RS21025 PF00252 Ribosomal protein L16p/L10e SH06_RS21030 PF07650 KH domain SH06_RS21030 PF00189 Ribosomal protein S3, C-terminal domain SH06_RS21035 PF00237 Ribosomal protein L22p/L17e SH06_RS21040 PF00203 Ribosomal protein S19 SH06_RS21045 PF00181 Ribosomal Proteins L2, RNA binding domain SH06_RS21045 PF03947 Ribosomal Proteins L2, C-terminal domain SH06_RS21050 PF00276 Ribosomal protein L23 SH06_RS21055 PF00573 Ribosomal protein L4/L1 family SH06_RS21060 PF00297 Ribosomal protein L3 SH06_RS21065 PF00338 Ribosomal protein S10p/S20e SH06_RS21075 PF01471 Putative peptidoglycan binding domain SH06_RS21075 PF13401 AAA domain SH06_RS21080 PF11356 Type II secretion system protein C SH06_RS21085 PF00263 Bacterial type II and III secretion system protein SH06_RS21085 PF03958 Bacterial type II/III secretion system short domain SH06_RS21090 PF00437 Type II/IV secretion system protein SH06_RS21095 PF00482 Type II secretion system (T2SS), protein F SH06_RS21100 PF08334 Type II secretion system (T2SS), protein G SH06_RS21100 PF07963 Prokaryotic N-terminal methylation motif SH06_RS21105 PF07963 Prokaryotic N-terminal methylation motif SH06_RS21105 PF12019 Type II transport protein GspH SH06_RS21110 PF02501 Type II secretion system (T2SS), protein I SH06_RS21110 PF07963 Prokaryotic N-terminal methylation motif SH06_RS21115 PF11612 Type II secretion system (T2SS), protein J SH06_RS21115 PF07963 Prokaryotic N-terminal methylation motif SH06_RS21120 PF03934 Type II secretion system (T2SS), protein K SH06_RS21125 PF12693 GspL periplasmic domain SH06_RS21125 PF05134 Type II secretion system (T2SS), protein L SH06_RS21130 PF04612 Type II secretion system (T2SS), protein M SH06_RS21135 PF01478 Type IV leader peptidase family SH06_RS21140 PF00210 Ferritin-like domain SH06_RS21145 PF04324 BFD-like [2Fe-2S] binding domain SH06_RS21150 PF02839 Carbohydrate binding domain SH06_RS21155 PF03144 Elongation factor Tu domain 2 SH06_RS21155 PF00009 Elongation factor Tu GTP binding domain SH06_RS21155 PF03143 Elongation factor Tu C-terminal domain SH06_RS21160 PF03144 Elongation factor Tu domain 2 SH06_RS21160 PF00009 Elongation factor Tu GTP binding domain SH06_RS21160 PF03764 Elongation factor G, domain IV SH06_RS21160 PF00679 Elongation factor G C-terminus SH06_RS21160 PF14492 Elongation Factor G, domain II SH06_RS21165 PF00177 Ribosomal protein S7p/S5e SH06_RS21170 PF00164 Ribosomal protein S12/S23 SH06_RS21175 PF04077 DsrH like protein SH06_RS21180 PF02635 DsrE/DsrF-like family SH06_RS21185 PF02635 DsrE/DsrF-like family SH06_RS21190 PF13309 HTH domain SH06_RS21190 PF08348 YheO-like PAS domain SH06_RS21195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH06_RS21195 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SH06_RS21200 PF04102 SlyX SH06_RS21205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH06_RS21210 PF09526 Probable metal-binding protein (DUF2387) SH06_RS21215 PF02254 TrkA-N domain SH06_RS21215 PF00999 Sodium/hydrogen exchanger family SH06_RS21220 PF02525 Flavodoxin-like fold SH06_RS21225 PF00005 ABC transporter SH06_RS21225 PF12848 ABC transporter SH06_RS21230 PF00561 alpha/beta hydrolase fold SH06_RS21235 PF06794 Uncharacterised protein family (UPF0270) SH06_RS21240 PF00485 Phosphoribulokinase / Uridine kinase family SH06_RS21245 PF02566 OsmC-like protein SH06_RS21255 PF00027 Cyclic nucleotide-binding domain SH06_RS21255 PF13545 Crp-like helix-turn-helix domain SH06_RS21260 PF12805 FUSC-like inner membrane protein yccS SH06_RS21265 PF00202 Aminotransferase class-III SH06_RS21270 PF00117 Glutamine amidotransferase class-I SH06_RS21275 PF02661 Fic/DOC family SH06_RS21280 PF10832 Protein of unknown function (DUF2559) SH06_RS21285 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SH06_RS21290 PF07690 Major Facilitator Superfamily SH06_RS21295 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH06_RS21295 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SH06_RS21295 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SH06_RS21295 PF04324 BFD-like [2Fe-2S] binding domain SH06_RS21295 PF18267 Rubredoxin NAD+ reductase C-terminal domain SH06_RS21300 PF13806 Rieske-like [2Fe-2S] domain SH06_RS21305 PF01226 Formate/nitrite transporter SH06_RS21310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH06_RS21310 PF14824 Sirohaem biosynthesis protein central SH06_RS21310 PF10414 Sirohaem synthase dimerisation region SH06_RS21315 PF13978 Protein of unknown function (DUF4223) SH06_RS21320 PF13520 Amino acid permease SH06_RS21325 PF01380 SIS domain SH06_RS21330 PF01261 Xylose isomerase-like TIM barrel SH06_RS21335 PF00294 pfkB family carbohydrate kinase SH06_RS21340 PF07702 UTRA domain SH06_RS21340 PF00392 Bacterial regulatory proteins, gntR family SH06_RS21345 PF00155 Aminotransferase class I and II SH06_RS21350 PF10797 Protein of unknown function SH06_RS21355 PF10941 Protein of unknown function DUF2620 SH06_RS21360 PF02126 Phosphotriesterase family SH06_RS21365 PF01676 Metalloenzyme superfamily SH06_RS21370 PF01168 Alanine racemase, N-terminal domain SH06_RS21380 PF14503 YhfZ C-terminal domain SH06_RS21380 PF14502 Helix-turn-helix domain SH06_RS21385 PF00579 tRNA synthetases class I (W and Y) SH06_RS21390 PF13419 Haloacid dehalogenase-like hydrolase SH06_RS21395 PF00834 Ribulose-phosphate 3 epimerase family SH06_RS21400 PF02086 D12 class N6 adenine-specific DNA methyltransferase SH06_RS21405 PF05036 Sporulation related domain SH06_RS21410 PF01761 3-dehydroquinate synthase SH06_RS21415 PF01202 Shikimate kinase SH06_RS21420 PF03958 Bacterial type II/III secretion system short domain SH06_RS21420 PF00263 Bacterial type II and III secretion system protein SH06_RS21425 PF10748 DNA utilization proteins HofP SH06_RS21435 PF05137 Fimbrial assembly protein (PilN) SH06_RS21445 PF17092 Penicillin-binding protein OB-like domain SH06_RS21445 PF00905 Penicillin binding protein transpeptidase domain SH06_RS21445 PF00912 Transglycosylase SH06_RS21450 PF00293 NUDIX domain SH06_RS21455 PF07095 Intracellular growth attenuator protein IgaA SH06_RS21460 PF13419 Haloacid dehalogenase-like hydrolase SH06_RS21465 PF01479 S4 domain SH06_RS21470 PF01430 Hsp33 protein SH06_RS21475 PF13687 Domain of unknown function (DUF4153) SH06_RS21485 PF01293 Phosphoenolpyruvate carboxykinase SH06_RS21490 PF00672 HAMP domain SH06_RS21490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS21490 PF00512 His Kinase A (phospho-acceptor) domain SH06_RS21495 PF00072 Response regulator receiver domain SH06_RS21495 PF00486 Transcriptional regulatory protein, C terminal SH06_RS21500 PF03449 Transcription elongation factor, N-terminal SH06_RS21500 PF01272 Transcription elongation factor, GreA/GreB, C-term SH06_RS21505 PF17674 HHH domain SH06_RS21505 PF00575 S1 RNA binding domain SH06_RS21505 PF16921 Tex protein YqgF-like domain SH06_RS21505 PF09371 Tex-like protein N-terminal domain SH06_RS21510 PF04023 FeoA domain SH06_RS21515 PF17910 FeoB cytosolic helical domain SH06_RS21515 PF07664 Ferrous iron transport protein B C terminus SH06_RS21515 PF02421 Ferrous iron transport protein B SH06_RS21515 PF07670 Nucleoside recognition SH06_RS21520 PF09012 FeoC like transcriptional regulator SH06_RS21525 PF04754 Putative transposase, YhgA-like SH06_RS21530 PF00561 alpha/beta hydrolase fold SH06_RS21535 PF00156 Phosphoribosyl transferase domain SH06_RS21540 PF01521 Iron-sulphur cluster biosynthesis SH06_RS21540 PF01106 NifU-like domain SH06_RS21545 PF02447 GntP family permease SH06_RS21550 PF02446 4-alpha-glucanotransferase SH06_RS21555 PF00343 Carbohydrate phosphorylase SH06_RS21560 PF17874 MalT-like TPR region SH06_RS21560 PF00196 Bacterial regulatory proteins, luxR family SH06_RS21565 PF01137 RNA 3'-terminal phosphate cyclase SH06_RS21565 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain SH06_RS21570 PF01139 tRNA-splicing ligase RtcB SH06_RS21575 PF06956 Regulator of RNA terminal phosphate cyclase SH06_RS21575 PF00158 Sigma-54 interaction domain SH06_RS21580 PF00455 DeoR C terminal sensor domain SH06_RS21580 PF08220 DeoR-like helix-turn-helix domain SH06_RS21585 PF01694 Rhomboid family SH06_RS21585 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease SH06_RS21590 PF00581 Rhodanese-like domain SH06_RS21595 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SH06_RS21595 PF01266 FAD dependent oxidoreductase SH06_RS21605 PF00343 Carbohydrate phosphorylase SH06_RS21610 PF08323 Starch synthase catalytic domain SH06_RS21610 PF00534 Glycosyl transferases group 1 SH06_RS21615 PF00483 Nucleotidyl transferase SH06_RS21620 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH06_RS21620 PF00128 Alpha amylase, catalytic domain SH06_RS21620 PF18390 Glycogen debranching enzyme C-terminal domain SH06_RS21625 PF02806 Alpha amylase, C-terminal all-beta domain SH06_RS21625 PF00128 Alpha amylase, catalytic domain SH06_RS21625 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH06_RS21630 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH06_RS21630 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH06_RS21635 PF01914 MarC family integral membrane protein SH06_RS21640 PF02447 GntP family permease SH06_RS21645 PF01202 Shikimate kinase SH06_RS21650 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH06_RS21650 PF00356 Bacterial regulatory proteins, lacI family SH06_RS21655 PF17954 Quercetinase C-terminal cupin domain SH06_RS21655 PF02678 Pirin SH06_RS21660 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH06_RS21660 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH06_RS21665 PF00583 Acetyltransferase (GNAT) family SH06_RS21670 PF05638 Type VI secretion system effector, Hcp SH06_RS21680 PF03400 IS1 transposase SH06_RS21685 PF15567 Immunity protein 35 SH06_RS21695 PF10956 Protein of unknown function (DUF2756) SH06_RS21700 PF03009 Glycerophosphoryl diester phosphodiesterase family SH06_RS21705 PF00005 ABC transporter SH06_RS21705 PF17912 MalK OB fold domain SH06_RS21710 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS21715 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS21720 PF13416 Bacterial extracellular solute-binding protein SH06_RS21730 PF00005 ABC transporter SH06_RS21735 PF12399 Branched-chain amino acid ATP-binding cassette transporter SH06_RS21735 PF00005 ABC transporter SH06_RS21740 PF02653 Branched-chain amino acid transport system / permease component SH06_RS21740 PF11862 Domain of unknown function (DUF3382) SH06_RS21745 PF02653 Branched-chain amino acid transport system / permease component SH06_RS21750 PF13458 Periplasmic binding protein SH06_RS21755 PF12568 Acetyltransferase (GNAT) domain, PanZ SH06_RS21765 PF13458 Periplasmic binding protein SH06_RS21770 PF04542 Sigma-70 region 2 SH06_RS21770 PF04545 Sigma-70, region 4 SH06_RS21775 PF18075 FtsX extracellular domain SH06_RS21775 PF02687 FtsX-like permease family SH06_RS21780 PF00005 ABC transporter SH06_RS21785 PF02881 SRP54-type protein, helical bundle domain SH06_RS21785 PF00448 SRP54-type protein, GTPase domain SH06_RS21795 PF06611 Protein of unknown function (DUF1145) SH06_RS21800 PF10694 Protein of unknown function (DUF2500) SH06_RS21805 PF07947 YhhN family SH06_RS21810 PF00403 Heavy-metal-associated domain SH06_RS21815 PF01206 Sulfurtransferase TusA SH06_RS21820 PF02592 Putative vitamin uptake transporter SH06_RS21825 PF08786 DcrB SH06_RS21830 PF07690 Major Facilitator Superfamily SH06_RS21835 PF01594 AI-2E family transporter SH06_RS21840 PF01648 4'-phosphopantetheinyl transferase superfamily SH06_RS21845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH06_RS21850 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS21855 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS21860 PF00005 ABC transporter SH06_RS21865 PF00005 ABC transporter SH06_RS21870 PF01402 Ribbon-helix-helix protein, copG family SH06_RS21870 PF08753 NikR C terminal nickel binding domain SH06_RS21875 PF03527 RHS protein SH06_RS21875 PF05593 RHS Repeat SH06_RS21875 PF14220 Domain of unknown function (DUF4329) SH06_RS21880 PF15631 NTF2 fold immunity protein SH06_RS21890 PF01609 Transposase DDE domain SH06_RS21890 PF13808 DDE_Tnp_1-associated SH06_RS21900 PF00005 ABC transporter SH06_RS21905 PF13533 Biotin-lipoyl like SH06_RS21910 PF13258 Domain of unknown function (DUF4049) SH06_RS21930 PF10951 Protein of unknown function (DUF2776) SH06_RS21940 PF01384 Phosphate transporter family SH06_RS21945 PF10625 Universal stress protein B (UspB) SH06_RS21950 PF00582 Universal stress protein family SH06_RS21955 PF00854 POT family SH06_RS21960 PF04445 Putative SAM-dependent methyltransferase SH06_RS21965 PF01432 Peptidase family M3 SH06_RS21970 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ SH06_RS21975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH06_RS21975 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH06_RS21990 PF01022 Bacterial regulatory protein, arsR family SH06_RS21995 PF02040 Arsenical pump membrane protein SH06_RS22000 PF03960 ArsC family SH06_RS22010 PF01609 Transposase DDE domain SH06_RS22010 PF05598 Transposase domain (DUF772) SH06_RS22020 PF03843 Outer membrane lipoprotein Slp family SH06_RS22025 PF00196 Bacterial regulatory proteins, luxR family SH06_RS22030 PF02308 MgtC family SH06_RS22035 PF06411 HdeA/HdeB family SH06_RS22040 PF06411 HdeA/HdeB family SH06_RS22045 PF03729 Short repeat of unknown function (DUF308) SH06_RS22050 PF00196 Bacterial regulatory proteins, luxR family SH06_RS22060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH06_RS22060 PF00529 HlyD membrane-fusion protein of T1SS SH06_RS22065 PF00873 AcrB/AcrD/AcrF family SH06_RS22070 PF12833 Helix-turn-helix domain SH06_RS22075 PF12833 Helix-turn-helix domain SH06_RS22080 PF00282 Pyridoxal-dependent decarboxylase conserved domain SH06_RS22085 PF14376 Haem-binding domain SH06_RS22085 PF00034 Cytochrome c SH06_RS22085 PF03150 Di-haem cytochrome c peroxidase SH06_RS22090 PF01204 Trehalase SH06_RS22095 PF00196 Bacterial regulatory proteins, luxR family SH06_RS22100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS22100 PF03466 LysR substrate binding domain SH06_RS22105 PF03631 Virulence factor BrkB SH06_RS22110 PF00083 Sugar (and other) transporter SH06_RS22110 PF07690 Major Facilitator Superfamily SH06_RS22115 PF05170 AsmA family SH06_RS22120 PF00563 EAL domain SH06_RS22130 PF00294 pfkB family carbohydrate kinase SH06_RS22135 PF05193 Peptidase M16 inactive domain SH06_RS22135 PF00675 Insulinase (Peptidase family M16) SH06_RS22140 PF00375 Sodium:dicarboxylate symporter family SH06_RS22145 PF00672 HAMP domain SH06_RS22145 PF00563 EAL domain SH06_RS22145 PF17154 Gammaproteobacterial periplasmic sensor domain SH06_RS22145 PF00990 Diguanylate cyclase, GGDEF domain SH06_RS22150 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) SH06_RS22155 PF01270 Glycosyl hydrolases family 8 SH06_RS22160 PF03170 Bacterial cellulose synthase subunit SH06_RS22165 PF03552 Cellulose synthase SH06_RS22165 PF07238 PilZ domain SH06_RS22165 PF00535 Glycosyl transferase family 2 SH06_RS22170 PF06564 Cellulose biosynthesis protein BcsQ SH06_RS22175 PF10945 Cellulose biosynthesis protein BcsR SH06_RS22180 PF01609 Transposase DDE domain SH06_RS22180 PF05598 Transposase domain (DUF772) SH06_RS22185 PF10995 Cellulose biosynthesis GIL SH06_RS22190 PF11120 Cellulose biosynthesis protein BcsF SH06_RS22195 PF11658 Cellulose biosynthesis protein BcsG SH06_RS22200 PF13940 Toxin Ldr, type I toxin-antitoxin system SH06_RS22210 PF03222 Tryptophan/tyrosine permease family SH06_RS22215 PF00005 ABC transporter SH06_RS22215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH06_RS22220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH06_RS22220 PF00005 ABC transporter SH06_RS22225 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS22225 PF12911 N-terminal TM domain of oligopeptide transport permease C SH06_RS22230 PF00528 Binding-protein-dependent transport system inner membrane component SH06_RS22240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH06_RS22255 PF08019 Phosphoethanolamine transferase EptA/EptB SH06_RS22255 PF00884 Sulfatase SH06_RS22260 PF07690 Major Facilitator Superfamily SH06_RS22265 PF03797 Autotransporter beta-domain SH06_RS22270 PF03352 Methyladenine glycosylase SH06_RS22275 PF00583 Acetyltransferase (GNAT) family SH06_RS22280 PF00384 Molybdopterin oxidoreductase SH06_RS22280 PF18364 Molybdopterin oxidoreductase N-terminal domain SH06_RS22280 PF01568 Molydopterin dinucleotide binding domain SH06_RS22285 PF00691 OmpA family SH06_RS22285 PF13488 Glycine zipper SH06_RS22290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH06_RS22290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH06_RS22295 PF11254 Protein of unknown function (DUF3053) SH06_RS22300 PF01381 Helix-turn-helix SH06_RS22305 PF00313 'Cold-shock' DNA-binding domain SH06_RS22310 PF01848 Hok/gef family SH06_RS22320 PF13333 Integrase core domain SH06_RS22320 PF00665 Integrase core domain SH06_RS22320 PF13276 HTH-like domain SH06_RS22325 PF02092 Glycyl-tRNA synthetase beta subunit SH06_RS22325 PF05746 DALR anticodon binding domain SH06_RS22330 PF02091 Glycyl-tRNA synthetase alpha subunit SH06_RS22335 PF13983 YsaB-like lipoprotein SH06_RS22340 PF01757 Acyltransferase family SH06_RS22345 PF05360 yiaA/B two helix domain SH06_RS22350 PF05360 yiaA/B two helix domain SH06_RS22355 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH06_RS22355 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH06_RS22365 PF13407 Periplasmic binding protein domain SH06_RS22370 PF03400 IS1 transposase SH06_RS22375 PF13407 Periplasmic binding protein domain SH06_RS22380 PF00005 ABC transporter SH06_RS22385 PF02653 Branched-chain amino acid transport system / permease component SH06_RS22390 PF12833 Helix-turn-helix domain SH06_RS22395 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH06_RS22400 PF00128 Alpha amylase, catalytic domain SH06_RS22405 PF00155 Aminotransferase class I and II SH06_RS22415 PF13247 4Fe-4S dicluster domain SH06_RS22420 PF09339 IclR helix-turn-helix domain SH06_RS22420 PF01614 Bacterial transcriptional regulator SH06_RS22425 PF02615 Malate/L-lactate dehydrogenase SH06_RS22430 PF04074 YhcH/YjgK/YiaL SH06_RS22435 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SH06_RS22440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SH06_RS22445 PF03480 Bacterial extracellular solute-binding protein, family 7 SH06_RS22450 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH06_RS22450 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH06_RS22455 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH06_RS22460 PF01261 Xylose isomerase-like TIM barrel SH06_RS22465 PF00596 Class II Aldolase and Adducin N-terminal domain SH06_RS22470 PF06629 MltA-interacting protein MipA SH06_RS22475 PF03466 LysR substrate binding domain SH06_RS22475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH06_RS22480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH06_RS22480 PF00529 HlyD membrane-fusion protein of T1SS SH06_RS22485 PF11742 Protein of unknown function (DUF3302) SH06_RS22495 PF00171 Aldehyde dehydrogenase family SH06_RS22500 PF00465 Iron-containing alcohol dehydrogenase SH06_RS22505 PF03144 Elongation factor Tu domain 2 SH06_RS22505 PF09106 Elongation factor SelB, winged helix SH06_RS22505 PF00009 Elongation factor Tu GTP binding domain SH06_RS22505 PF09107 Elongation factor SelB, winged helix SH06_RS22510 PF03841 L-seryl-tRNA selenium transferase SH06_RS22510 PF12390 Selenocysteine synthase N terminal SH06_RS22515 PF13417 Glutathione S-transferase, N-terminal domain SH06_RS22515 PF00043 Glutathione S-transferase, C-terminal domain SH06_RS22520 PF15606 Bacterial toxin 34 SH06_RS22520 PF03527 RHS protein SH06_RS22520 PF05593 RHS Repeat SH06_RS22525 PF03130 PBS lyase HEAT-like repeat SH06_RS22530 PF03527 RHS protein SH06_RS22545 PF00529 HlyD membrane-fusion protein of T1SS SH06_RS22545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH06_RS22550 PF11742 Protein of unknown function (DUF3302) SH06_RS22560 PF01232 Mannitol dehydrogenase Rossmann domain SH06_RS22560 PF08125 Mannitol dehydrogenase C-terminal domain SH06_RS22565 PF05068 Mannitol repressor SH06_RS22575 PF10928 Protein of unknown function (DUF2810) SH06_RS22580 PF02652 L-lactate permease SH06_RS22585 PF00392 Bacterial regulatory proteins, gntR family SH06_RS22585 PF07729 FCD domain SH06_RS22590 PF01070 FMN-dependent dehydrogenase SH06_RS22595 PF00588 SpoU rRNA Methylase family SH06_RS22600 PF06426 Serine acetyltransferase, N-terminal SH06_RS22600 PF00132 Bacterial transferase hexapeptide (six repeats) SH06_RS22605 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SH06_RS22605 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SH06_RS22610 PF02556 Preprotein translocase subunit SecB SH06_RS22615 PF00462 Glutaredoxin SH06_RS22620 PF00581 Rhodanese-like domain SH06_RS22625 PF01676 Metalloenzyme superfamily SH06_RS22625 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SH06_RS22630 PF01551 Peptidase family M23 SH06_RS22635 PF04748 Divergent polysaccharide deacetylase SH06_RS22640 PF00535 Glycosyl transferase family 2 SH06_RS22645 PF08240 Alcohol dehydrogenase GroES-like domain SH06_RS22645 PF00107 Zinc-binding dehydrogenase SH06_RS22650 PF00155 Aminotransferase class I and II SH06_RS22655 PF09612 Bacterial protein of unknown function (HtrL_YibB) SH06_RS22660 PF01370 NAD dependent epimerase/dehydratase family SH06_RS22665 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH06_RS22670 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH06_RS22675 PF04932 O-Antigen ligase SH06_RS22680 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH06_RS22690 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) SH06_RS22695 PF08437 Glycosyl transferase family 8 C-terminal SH06_RS22695 PF01501 Glycosyl transferase family 8 SH06_RS22700 PF01501 Glycosyl transferase family 8 SH06_RS22700 PF08437 Glycosyl transferase family 8 C-terminal SH06_RS22705 PF13439 Glycosyltransferase Family 4 SH06_RS22705 PF00534 Glycosyl transferases group 1 SH06_RS22720 PF00534 Glycosyl transferases group 1 SH06_RS22720 PF13439 Glycosyltransferase Family 4 SH06_RS22725 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH06_RS22730 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SH06_RS22735 PF01467 Cytidylyltransferase-like SH06_RS22740 PF06827 Zinc finger found in FPG and IleRS SH06_RS22740 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SH06_RS22740 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SH06_RS22745 PF00471 Ribosomal protein L33 SH06_RS22750 PF00830 Ribosomal L28 family SH06_RS22755 PF04002 RadC-like JAB domain SH06_RS22760 PF04127 DNA / pantothenate metabolism flavoprotein SH06_RS22760 PF02441 Flavoprotein SH06_RS22765 PF00692 dUTPase SH06_RS22770 PF00440 Bacterial regulatory proteins, tetR family SH06_RS22775 PF00156 Phosphoribosyl transferase domain SH06_RS22780 PF01138 3' exoribonuclease family, domain 1 SH06_RS22780 PF03725 3' exoribonuclease family, domain 2 SH06_RS22785 PF08340 Domain of unknown function (DUF1732) SH06_RS22785 PF03755 YicC-like family, N-terminal region SH06_RS22795 PF03458 UPF0126 domain SH06_RS22800 PF03120 NAD-dependent DNA ligase OB-fold domain SH06_RS22800 PF01653 NAD-dependent DNA ligase adenylation domain SH06_RS22805 PF00625 Guanylate kinase SH06_RS22810 PF01192 RNA polymerase Rpb6 SH06_RS22815 PF04607 Region found in RelA / SpoT proteins SH06_RS22815 PF13291 ACT domain SH06_RS22815 PF02824 TGS domain SH06_RS22820 PF00588 SpoU rRNA Methylase family SH06_RS22820 PF12105 SpoU, rRNA methylase, C-terminal SH06_RS22825 PF00270 DEAD/DEAH box helicase SH06_RS22825 PF00271 Helicase conserved C-terminal domain SH06_RS22825 PF17191 RecG wedge domain SH06_RS22830 PF03616 Sodium/glutamate symporter SH06_RS22835 PF00860 Permease family SH06_RS22840 PF05170 AsmA family SH06_RS22845 PF01055 Glycosyl hydrolases family 31 SH06_RS22845 PF13802 Galactose mutarotase-like SH06_RS22865 PF07690 Major Facilitator Superfamily SH06_RS22870 PF00892 EamA-like transporter family SH06_RS22875 PF03180 NLPA lipoprotein SH06_RS22890 PF07690 Major Facilitator Superfamily SH06_RS22895 PF06711 Protein of unknown function (DUF1198) SH06_RS22900 PF00860 Permease family SH06_RS22905 PF13382 Adenine deaminase C-terminal domain SH06_RS22905 PF01979 Amidohydrolase family SH06_RS22910 PF07690 Major Facilitator Superfamily SH06_RS22915 PF07690 Major Facilitator Superfamily SH06_RS22920 PF07730 Histidine kinase SH06_RS22920 PF05231 MASE1 SH06_RS22920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS22925 PF00072 Response regulator receiver domain SH06_RS22925 PF00196 Bacterial regulatory proteins, luxR family SH06_RS22930 PF01842 ACT domain SH06_RS22935 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH06_RS22935 PF00205 Thiamine pyrophosphate enzyme, central domain SH06_RS22935 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH06_RS22940 PF08049 IlvB leader peptide SH06_RS22955 PF13939 Toxin TisB, type I toxin-antitoxin system SH06_RS22960 PF07690 Major Facilitator Superfamily SH06_RS22970 PF02656 Domain of unknown function (DUF202) SH06_RS22975 PF02656 Domain of unknown function (DUF202) SH06_RS22985 PF00884 Sulfatase SH06_RS22985 PF16347 Domain of unknown function (DUF4976) SH06_RS22990 PF00474 Sodium:solute symporter family SH06_RS22995 PF12833 Helix-turn-helix domain SH06_RS22995 PF02311 AraC-like ligand binding domain SH06_RS23000 PF02056 Family 4 glycosyl hydrolase SH06_RS23005 PF00367 phosphotransferase system, EIIB SH06_RS23010 PF02378 Phosphotransferase system, EIIC SH06_RS23015 PF00392 Bacterial regulatory proteins, gntR family SH06_RS23015 PF07702 UTRA domain SH06_RS23020 PF02080 TrkA-C domain SH06_RS23020 PF06826 Predicted Permease Membrane Region SH06_RS23025 PF00011 Hsp20/alpha crystallin family SH06_RS23030 PF00011 Hsp20/alpha crystallin family SH06_RS23035 PF07119 Protein of unknown function (DUF1375) SH06_RS23040 PF07676 WD40-like Beta Propeller Repeat SH06_RS23040 PF12566 Protein of unknown function (DUF3748) SH06_RS23045 PF01494 FAD binding domain SH06_RS23050 PF07690 Major Facilitator Superfamily SH06_RS23055 PF13378 Enolase C-terminal domain-like SH06_RS23055 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH06_RS23060 PF01081 KDPG and KHG aldolase SH06_RS23065 PF05035 2-keto-3-deoxy-galactonokinase SH06_RS23070 PF00392 Bacterial regulatory proteins, gntR family SH06_RS23070 PF07729 FCD domain SH06_RS23085 PF06078 Bacterial protein of unknown function (DUF937) SH06_RS23095 PF00204 DNA gyrase B SH06_RS23095 PF01751 Toprim domain SH06_RS23095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH06_RS23095 PF18053 DNA gyrase B subunit insert domain SH06_RS23095 PF00986 DNA gyrase B subunit, carboxyl terminus SH06_RS23100 PF02463 RecF/RecN/SMC N terminal domain SH06_RS23105 PF02767 DNA polymerase III beta subunit, central domain SH06_RS23105 PF00712 DNA polymerase III beta subunit, N-terminal domain SH06_RS23105 PF02768 DNA polymerase III beta subunit, C-terminal domain SH06_RS23110 PF08299 Bacterial dnaA protein helix-turn-helix SH06_RS23110 PF00308 Bacterial dnaA protein SH06_RS23110 PF11638 DnaA N-terminal domain SH06_RS23170 PF03400 IS1 transposase SH06_RS23180 PF07151 Protein of unknown function (DUF1391) SH06_RS23190 PF00871 Acetokinase family