SH06_RS00015 SM01234 SH06_RS00015 SH06_RS00110 SM01061 CAT RNA binding domain SH06_RS00120 SM00382 ATPases associated with a variety of cellular activities SH06_RS00155 SM00382 ATPases associated with a variety of cellular activities SH06_RS00200 SM01228 SH06_RS00200 SH06_RS00210 SM00344 helix_turn_helix ASNC type SH06_RS00220 SM00327 von Willebrand factor (vWF) type A domain SH06_RS00225 SM00382 ATPases associated with a variety of cellular activities SH06_RS00240 SM00382 ATPases associated with a variety of cellular activities SH06_RS00260 SM00354 helix_turn _helix lactose operon repressor SH06_RS00270 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS00270 SM00895 SH06_RS00270 SH06_RS00315 SM00382 ATPases associated with a variety of cellular activities SH06_RS00380 SM00487 DEAD-like helicases superfamily SH06_RS00380 SM00490 helicase superfamily c-terminal domain SH06_RS00395 SM00357 Cold shock protein domain SH06_RS00395 SM00382 ATPases associated with a variety of cellular activities SH06_RS00395 SM00959 Rho termination factor, N-terminal domain SH06_RS00420 SM00984 UDP binding domain SH06_RS00525 SM01219 SH06_RS00525 SH06_RS00600 SM00341 Helicase and RNase D C-terminal SH06_RS00600 SM00487 DEAD-like helicases superfamily SH06_RS00600 SM00490 helicase superfamily c-terminal domain SH06_RS00600 SM00956 SH06_RS00600 SH06_RS00690 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SH06_RS00790 SM00563 Phosphate acyltransferases SH06_RS00800 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH06_RS00800 SM00474 3'-5' exonuclease SH06_RS00800 SM00475 5'-3' exonuclease SH06_RS00800 SM00482 DNA polymerase A domain SH06_RS00815 SM00729 Elongator protein 3, MiaB family, Radical SAM SH06_RS00825 SM00382 ATPases associated with a variety of cellular activities SH06_RS00825 SM00448 cheY-homologous receiver domain SH06_RS00830 SM00091 PAS domain SH06_RS00830 SM00387 Histidine kinase-like ATPases SH06_RS00830 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS00835 SM01230 SH06_RS00835 SH06_RS00850 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS00850 SM00866 SH06_RS00850 SH06_RS00895 SM01133 SH06_RS00895 SH06_RS00910 SM00420 helix_turn_helix, Deoxyribose operon repressor SH06_RS00910 SM01134 SH06_RS00910 SH06_RS00970 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS01010 SM01007 Class II Aldolase and Adducin N-terminal domain SH06_RS01030 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS01035 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS01065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS01065 SM00387 Histidine kinase-like ATPases SH06_RS01065 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS01070 SM00448 cheY-homologous receiver domain SH06_RS01070 SM00862 Transcriptional regulatory protein, C terminal SH06_RS01160 SM00382 ATPases associated with a variety of cellular activities SH06_RS01160 SM01086 C-terminal, D2-small domain, of ClpB protein SH06_RS01175 SM00354 helix_turn _helix lactose operon repressor SH06_RS01180 SM00487 DEAD-like helicases superfamily SH06_RS01180 SM00490 helicase superfamily c-terminal domain SH06_RS01280 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS01305 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH06_RS01425 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SH06_RS01425 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH06_RS01430 SM00649 Ribosomal protein L11/L12 SH06_RS01455 SM00663 RNA polymerase I subunit A N-terminus SH06_RS01465 SM00876 Biotin and Thiamin Synthesis associated domain SH06_RS01520 SM00411 bacterial (prokaryotic) histone like domain SH06_RS01535 SM00387 Histidine kinase-like ATPases SH06_RS01535 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS01540 SM00382 ATPases associated with a variety of cellular activities SH06_RS01540 SM00448 cheY-homologous receiver domain SH06_RS01545 SM01209 SH06_RS01545 SH06_RS01545 SM01210 SH06_RS01545 SH06_RS01550 SM00798 AICARFT/IMPCHase bienzyme SH06_RS01550 SM00851 MGS-like domain SH06_RS01615 SM00248 ankyrin repeats SH06_RS01620 SM00346 helix_turn_helix isocitrate lyase regulation SH06_RS01625 SM01018 B12 binding domain SH06_RS01640 SM00363 S4 RNA-binding domain SH06_RS01720 SM00382 ATPases associated with a variety of cellular activities SH06_RS01755 SM00563 Phosphate acyltransferases SH06_RS01805 SM00829 Enoylreductase SH06_RS01810 SM00382 ATPases associated with a variety of cellular activities SH06_RS01815 SM01005 Alanine racemase, C-terminal domain SH06_RS01860 SM00052 Putative diguanylate phosphodiesterase SH06_RS01865 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS01870 SM00422 helix_turn_helix, mercury resistance SH06_RS01935 SM00028 Tetratricopeptide repeats SH06_RS01945 SM00671 Sel1-like repeats. SH06_RS01955 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS01980 SM00849 Metallo-beta-lactamase superfamily SH06_RS02000 SM00382 ATPases associated with a variety of cellular activities SH06_RS02035 SM00072 Guanylate kinase homologues. SH06_RS02045 SM00382 ATPases associated with a variety of cellular activities SH06_RS02050 SM00382 ATPases associated with a variety of cellular activities SH06_RS02075 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS02075 SM00866 SH06_RS02075 SH06_RS02090 SM00382 ATPases associated with a variety of cellular activities SH06_RS02125 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS02125 SM00387 Histidine kinase-like ATPases SH06_RS02125 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS02130 SM00448 cheY-homologous receiver domain SH06_RS02130 SM00862 Transcriptional regulatory protein, C terminal SH06_RS02145 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS02155 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS02195 SM00448 cheY-homologous receiver domain SH06_RS02200 SM00091 PAS domain SH06_RS02200 SM00387 Histidine kinase-like ATPases SH06_RS02245 SM00862 Transcriptional regulatory protein, C terminal SH06_RS02290 SM00883 Chaperonin 10 Kd subunit SH06_RS02315 SM00841 Elongation factor P, C-terminal SH06_RS02315 SM01185 SH06_RS02315 SH06_RS02400 SM00479 SH06_RS02400 SH06_RS02435 SM00646 SH06_RS02435 SH06_RS02440 SM00853 MutL C terminal dimerisation domain SH06_RS02440 SM01340 SH06_RS02440 SH06_RS02460 SM00244 prohibitin homologues SH06_RS02465 SM00244 prohibitin homologues SH06_RS02475 SM00788 Adenylosuccinate synthetase SH06_RS02485 SM00316 Ribosomal protein S1-like RNA-binding domain SH06_RS02485 SM00357 Cold shock protein domain SH06_RS02485 SM00955 SH06_RS02485 SH06_RS02490 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH06_RS02545 SM00420 helix_turn_helix, Deoxyribose operon repressor SH06_RS02545 SM01134 SH06_RS02545 SH06_RS02570 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH06_RS02580 SM01007 Class II Aldolase and Adducin N-terminal domain SH06_RS02685 SM01091 Transporter associated domain SH06_RS02715 SM00966 SpoVT / AbrB like domain SH06_RS02735 SM00382 ATPases associated with a variety of cellular activities SH06_RS02785 SM00642 Alpha-amylase domain SH06_RS02795 SM00354 helix_turn _helix lactose operon repressor SH06_RS02800 SM00831 Cation transporter/ATPase, N-terminus SH06_RS02835 SM00822 SH06_RS02835 SH06_RS02905 SM00354 helix_turn _helix lactose operon repressor SH06_RS02930 SM00829 Enoylreductase SH06_RS03015 SM00052 Putative diguanylate phosphodiesterase SH06_RS03015 SM00421 helix_turn_helix, Lux Regulon SH06_RS03025 SM00857 Resolvase, N terminal domain SH06_RS03365 SM00382 ATPases associated with a variety of cellular activities SH06_RS03385 SM00965 Secretin and TonB N terminus short domain SH06_RS03435 SM01130 SH06_RS03435 SH06_RS03440 SM00346 helix_turn_helix isocitrate lyase regulation SH06_RS03445 SM00420 helix_turn_helix, Deoxyribose operon repressor SH06_RS03445 SM01134 SH06_RS03445 SH06_RS03610 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS03610 SM00895 SH06_RS03610 SH06_RS03705 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS03730 SM00382 ATPases associated with a variety of cellular activities SH06_RS03750 SM00487 DEAD-like helicases superfamily SH06_RS03750 SM00490 helicase superfamily c-terminal domain SH06_RS03770 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH06_RS03790 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH06_RS03790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS03790 SM00319 Homologues of the ligand binding domain of Tar SH06_RS03800 SM00895 SH06_RS03800 SH06_RS03805 SM00829 Enoylreductase SH06_RS03820 SM00382 ATPases associated with a variety of cellular activities SH06_RS03840 SM00421 helix_turn_helix, Lux Regulon SH06_RS03845 SM00421 helix_turn_helix, Lux Regulon SH06_RS03900 SM00749 bacterial OsmY and nodulation domain SH06_RS03935 SM01133 SH06_RS03935 SH06_RS03940 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SH06_RS03975 SM00382 ATPases associated with a variety of cellular activities SH06_RS03980 SM00530 Helix-turn-helix XRE-family like proteins SH06_RS03990 SM00382 ATPases associated with a variety of cellular activities SH06_RS04010 SM00855 Phosphoglycerate mutase family SH06_RS04015 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS04015 SM00871 Bacterial transcription activator, effector binding domain SH06_RS04025 SM00448 cheY-homologous receiver domain SH06_RS04025 SM00862 Transcriptional regulatory protein, C terminal SH06_RS04030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS04030 SM00387 Histidine kinase-like ATPases SH06_RS04030 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS04040 SM00448 cheY-homologous receiver domain SH06_RS04040 SM00862 Transcriptional regulatory protein, C terminal SH06_RS04100 SM00852 Probable molybdopterin binding domain SH06_RS04125 SM00271 DnaJ molecular chaperone homology domain SH06_RS04170 SM00904 Riboflavin kinase SH06_RS04215 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SH06_RS04220 SM00851 MGS-like domain SH06_RS04220 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SH06_RS04265 SM00893 Electron transfer flavoprotein domain SH06_RS04270 SM00893 Electron transfer flavoprotein domain SH06_RS04315 SM00650 Ribosomal RNA adenine dimethylases SH06_RS04335 SM00271 DnaJ molecular chaperone homology domain SH06_RS04350 SM00487 DEAD-like helicases superfamily SH06_RS04350 SM00490 helicase superfamily c-terminal domain SH06_RS04355 SM00486 DNA polymerase type-B family SH06_RS04360 SM01007 Class II Aldolase and Adducin N-terminal domain SH06_RS04375 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS04385 SM00382 ATPases associated with a variety of cellular activities SH06_RS04425 SM01329 SH06_RS04425 SH06_RS04430 SM00917 LeuA allosteric (dimerisation) domain SH06_RS04460 SM00354 helix_turn _helix lactose operon repressor SH06_RS04530 SM00842 Cell division protein FtsA SH06_RS04535 SM00864 Tubulin/FtsZ family, GTPase domain SH06_RS04535 SM00865 Tubulin/FtsZ family, C-terminal domain SH06_RS04550 SM00957 SecA DEAD-like domain SH06_RS04550 SM00958 SecA preprotein cross-linking domain SH06_RS04580 SM01240 SH06_RS04580 SH06_RS04610 SM00644 SH06_RS04610 SH06_RS04625 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS04625 SM00895 SH06_RS04625 SH06_RS04680 SM00564 beta-propeller repeat SH06_RS04690 SM00947 Carbonic anhydrase SH06_RS04695 SM00382 ATPases associated with a variety of cellular activities SH06_RS04800 SM00487 DEAD-like helicases superfamily SH06_RS04800 SM00490 helicase superfamily c-terminal domain SH06_RS04800 SM00847 Helicase associated domain (HA2) Add an annotation SH06_RS04820 SM00382 ATPases associated with a variety of cellular activities SH06_RS04865 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH06_RS04870 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH06_RS04895 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH06_RS04940 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH06_RS04950 SM00935 Outer membrane protein (OmpH-like) SH06_RS04980 SM00481 DNA polymerase alpha chain like domain SH06_RS05000 SM00977 TilS substrate C-terminal domain SH06_RS05015 SM01322 SH06_RS05015 SH06_RS05060 SM00382 ATPases associated with a variety of cellular activities SH06_RS05060 SM00930 SH06_RS05060 SH06_RS05120 SM00257 Lysin motif SH06_RS05125 SM00849 Metallo-beta-lactamase superfamily SH06_RS05140 SM00479 SH06_RS05140 SH06_RS05215 SM01321 SH06_RS05215 SH06_RS05285 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SH06_RS05400 SM00382 ATPases associated with a variety of cellular activities SH06_RS05435 SM01130 SH06_RS05435 SH06_RS05455 SM00346 helix_turn_helix isocitrate lyase regulation SH06_RS05520 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH06_RS05525 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH06_RS05570 SM00421 helix_turn_helix, Lux Regulon SH06_RS05610 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS05630 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS05685 SM00052 Putative diguanylate phosphodiesterase SH06_RS05685 SM00421 helix_turn_helix, Lux Regulon SH06_RS05700 SM00248 ankyrin repeats SH06_RS05735 SM00829 Enoylreductase SH06_RS05760 SM00382 ATPases associated with a variety of cellular activities SH06_RS05800 SM00947 Carbonic anhydrase SH06_RS05805 SM01116 SH06_RS05805 SH06_RS05815 SM01266 SH06_RS05815 SH06_RS05825 SM01038 Beta galactosidase small chain SH06_RS05835 SM00346 helix_turn_helix isocitrate lyase regulation SH06_RS05860 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH06_RS05885 SM00829 Enoylreductase SH06_RS05925 SM00062 Bacterial periplasmic substrate-binding proteins SH06_RS05930 SM00382 ATPases associated with a variety of cellular activities SH06_RS05945 SM01004 Delta-aminolevulinic acid dehydratase SH06_RS05965 SM00869 Autotransporter beta-domain SH06_RS06020 SM00098 Alkaline phosphatase homologues SH06_RS06030 SM00267 diguanylate cyclase SH06_RS06100 SM00448 cheY-homologous receiver domain SH06_RS06100 SM00862 Transcriptional regulatory protein, C terminal SH06_RS06105 SM00091 PAS domain SH06_RS06105 SM00387 Histidine kinase-like ATPases SH06_RS06105 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS06120 SM00642 Alpha-amylase domain SH06_RS06140 SM01323 SH06_RS06140 SH06_RS06155 SM00507 HNH nucleases SH06_RS06210 SM00861 Transketolase, pyrimidine binding domain SH06_RS06225 SM00981 SH06_RS06225 SH06_RS06305 SM00382 ATPases associated with a variety of cellular activities SH06_RS06305 SM00994 ClpX C4-type zinc finger SH06_RS06305 SM01086 C-terminal, D2-small domain, of ClpB protein SH06_RS06310 SM00382 ATPases associated with a variety of cellular activities SH06_RS06310 SM00464 Found in ATP-dependent protease La (LON) SH06_RS06315 SM00411 bacterial (prokaryotic) histone like domain SH06_RS06325 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH06_RS06350 SM00344 helix_turn_helix ASNC type SH06_RS06355 SM00382 ATPases associated with a variety of cellular activities SH06_RS06360 SM00382 ATPases associated with a variety of cellular activities SH06_RS06365 SM00938 Nitrogen regulatory protein P-II SH06_RS06395 SM00052 Putative diguanylate phosphodiesterase SH06_RS06405 SM01266 SH06_RS06405 SH06_RS06465 SM00382 ATPases associated with a variety of cellular activities SH06_RS06475 SM00493 SH06_RS06475 SH06_RS06480 SM00387 Histidine kinase-like ATPases SH06_RS06530 SM00530 Helix-turn-helix XRE-family like proteins SH06_RS06550 SM00422 helix_turn_helix, mercury resistance SH06_RS06560 SM00244 prohibitin homologues SH06_RS06565 SM00382 ATPases associated with a variety of cellular activities SH06_RS06580 SM00822 SH06_RS06580 SH06_RS06590 SM00382 ATPases associated with a variety of cellular activities SH06_RS06625 SM00450 Rhodanese Homology Domain SH06_RS06640 SM00346 helix_turn_helix isocitrate lyase regulation SH06_RS06720 SM01001 AIR carboxylase SH06_RS06735 SM00840 SH06_RS06735 SH06_RS06780 SM00421 helix_turn_helix, Lux Regulon SH06_RS06780 SM00448 cheY-homologous receiver domain SH06_RS06835 SM00857 Resolvase, N terminal domain SH06_RS06845 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS06960 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS06975 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS06985 SM00028 Tetratricopeptide repeats SH06_RS06995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS06995 SM00387 Histidine kinase-like ATPases SH06_RS06995 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS07000 SM00448 cheY-homologous receiver domain SH06_RS07000 SM00862 Transcriptional regulatory protein, C terminal SH06_RS07085 SM00923 MbtH-like protein SH06_RS07090 SM00823 Phosphopantetheine attachment site SH06_RS07090 SM00824 Thioesterase SH06_RS07100 SM00382 ATPases associated with a variety of cellular activities SH06_RS07140 SM00822 SH06_RS07140 SH06_RS07170 SM00470 ParB-like nuclease domain SH06_RS07255 SM00764 Citrate lyase ligase C-terminal domain SH06_RS07260 SM00091 PAS domain SH06_RS07260 SM00387 Histidine kinase-like ATPases SH06_RS07265 SM00448 cheY-homologous receiver domain SH06_RS07280 SM00357 Cold shock protein domain SH06_RS07300 SM00729 Elongator protein 3, MiaB family, Radical SAM SH06_RS07325 SM00936 Penicillin-binding protein 5, C-terminal domain SH06_RS07355 SM00855 Phosphoglycerate mutase family SH06_RS07385 SM00671 Sel1-like repeats. SH06_RS07395 SM00271 DnaJ molecular chaperone homology domain SH06_RS07400 SM00671 Sel1-like repeats. SH06_RS07425 SM00382 ATPases associated with a variety of cellular activities SH06_RS07440 SM00062 Bacterial periplasmic substrate-binding proteins SH06_RS07455 SM00116 Domain in cystathionine beta-synthase and other proteins. SH06_RS07455 SM01091 Transporter associated domain SH06_RS07470 SM00729 Elongator protein 3, MiaB family, Radical SAM SH06_RS07630 SM00448 cheY-homologous receiver domain SH06_RS07630 SM00862 Transcriptional regulatory protein, C terminal SH06_RS07635 SM00387 Histidine kinase-like ATPases SH06_RS07635 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS07720 SM00796 Allophanate hydrolase subunit 1 SH06_RS07725 SM00797 Allophanate hydrolase subunit 2 SH06_RS07735 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SH06_RS07735 SM01232 SH06_RS07735 SH06_RS07800 SM00861 Transketolase, pyrimidine binding domain SH06_RS07815 SM00881 CoA binding domain SH06_RS07820 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS07820 SM00866 SH06_RS07820 SH06_RS07830 SM00872 Alpha mannosidase, middle domain SH06_RS07960 SM00855 Phosphoglycerate mutase family SH06_RS07985 SM00382 ATPases associated with a variety of cellular activities SH06_RS08010 SM00382 ATPases associated with a variety of cellular activities SH06_RS08060 SM00729 Elongator protein 3, MiaB family, Radical SAM SH06_RS08060 SM00876 Biotin and Thiamin Synthesis associated domain SH06_RS08080 SM00487 DEAD-like helicases superfamily SH06_RS08080 SM00490 helicase superfamily c-terminal domain SH06_RS08095 SM00729 Elongator protein 3, MiaB family, Radical SAM SH06_RS08100 SM00852 Probable molybdopterin binding domain SH06_RS08135 SM00155 Phospholipase D. Active site motifs. SH06_RS08160 SM00382 ATPases associated with a variety of cellular activities SH06_RS08175 SM00487 DEAD-like helicases superfamily SH06_RS08175 SM00490 helicase superfamily c-terminal domain SH06_RS08185 SM00487 DEAD-like helicases superfamily SH06_RS08185 SM00488 SH06_RS08185 SH06_RS08185 SM00491 SH06_RS08185 SH06_RS08210 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. SH06_RS08235 SM00382 ATPases associated with a variety of cellular activities SH06_RS08245 SM00062 Bacterial periplasmic substrate-binding proteins SH06_RS08245 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH06_RS08280 SM00529 Helix-turn-helix diphteria tox regulatory element SH06_RS08295 SM00382 ATPases associated with a variety of cellular activities SH06_RS08330 SM00852 Probable molybdopterin binding domain SH06_RS08340 SM00382 ATPases associated with a variety of cellular activities SH06_RS08360 SM00052 Putative diguanylate phosphodiesterase SH06_RS08365 SM00267 diguanylate cyclase SH06_RS08370 SM00729 Elongator protein 3, MiaB family, Radical SAM SH06_RS08390 SM00936 Penicillin-binding protein 5, C-terminal domain SH06_RS08395 SM00420 helix_turn_helix, Deoxyribose operon repressor SH06_RS08395 SM01134 SH06_RS08395 SH06_RS08400 SM00014 Acid phosphatase homologues SH06_RS08475 SM00382 ATPases associated with a variety of cellular activities SH06_RS08500 SM00062 Bacterial periplasmic substrate-binding proteins SH06_RS08500 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH06_RS08515 SM00062 Bacterial periplasmic substrate-binding proteins SH06_RS08515 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH06_RS08520 SM00382 ATPases associated with a variety of cellular activities SH06_RS08535 SM00644 SH06_RS08535 SH06_RS08600 SM00382 ATPases associated with a variety of cellular activities SH06_RS08605 SM00357 Cold shock protein domain SH06_RS08615 SM00382 ATPases associated with a variety of cellular activities SH06_RS08615 SM01086 C-terminal, D2-small domain, of ClpB protein SH06_RS08625 SM00316 Ribosomal protein S1-like RNA-binding domain SH06_RS08635 SM00382 ATPases associated with a variety of cellular activities SH06_RS08640 SM00382 ATPases associated with a variety of cellular activities SH06_RS08650 SM00344 helix_turn_helix ASNC type SH06_RS08655 SM00843 SH06_RS08655 SH06_RS08665 SM00382 ATPases associated with a variety of cellular activities SH06_RS08675 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS08760 SM00316 Ribosomal protein S1-like RNA-binding domain SH06_RS08765 SM00411 bacterial (prokaryotic) histone like domain SH06_RS08770 SM00849 Metallo-beta-lactamase superfamily SH06_RS08775 SM00382 ATPases associated with a variety of cellular activities SH06_RS08840 SM00849 Metallo-beta-lactamase superfamily SH06_RS08875 SM00382 ATPases associated with a variety of cellular activities SH06_RS08890 SM00062 Bacterial periplasmic substrate-binding proteins SH06_RS08950 SM00981 SH06_RS08950 SH06_RS08955 SM00382 ATPases associated with a variety of cellular activities SH06_RS09030 SM00851 MGS-like domain SH06_RS09045 SM00881 CoA binding domain SH06_RS09050 SM00992 Hemimethylated DNA-binding protein YccV like SH06_RS09055 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SH06_RS09135 SM00226 Low molecular weight phosphatase family SH06_RS09175 SM00357 Cold shock protein domain SH06_RS09180 SM00357 Cold shock protein domain SH06_RS09200 SM00073 Histidine Phosphotransfer domain SH06_RS09200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS09200 SM00387 Histidine kinase-like ATPases SH06_RS09200 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS09200 SM00448 cheY-homologous receiver domain SH06_RS09210 SM00448 cheY-homologous receiver domain SH06_RS09210 SM00862 Transcriptional regulatory protein, C terminal SH06_RS09235 SM00271 DnaJ molecular chaperone homology domain SH06_RS09275 SM00903 Flavin reductase like domain SH06_RS09370 SM00028 Tetratricopeptide repeats SH06_RS09375 SM00267 diguanylate cyclase SH06_RS09415 SM00481 DNA polymerase alpha chain like domain SH06_RS09445 SM00421 helix_turn_helix, Lux Regulon SH06_RS09475 SM00506 Appr-1"-p processing enzyme SH06_RS09480 SM00155 Phospholipase D. Active site motifs. SH06_RS09535 SM00450 Rhodanese Homology Domain SH06_RS09540 SM00867 YceI-like domain SH06_RS09620 SM00858 SH06_RS09620 SH06_RS09665 SM00047 Lysozyme subfamily 2 SH06_RS09680 SM00316 Ribosomal protein S1-like RNA-binding domain SH06_RS09690 SM00363 S4 RNA-binding domain SH06_RS09720 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SH06_RS09725 SM00822 SH06_RS09725 SH06_RS09735 SM00825 Beta-ketoacyl synthase SH06_RS09825 SM00257 Lysin motif SH06_RS09830 SM00487 DEAD-like helicases superfamily SH06_RS09830 SM00490 helicase superfamily c-terminal domain SH06_RS09830 SM00982 SH06_RS09830 SH06_RS09830 SM01058 CarD-like/TRCF domain SH06_RS09845 SM00382 ATPases associated with a variety of cellular activities SH06_RS09890 SM00382 ATPases associated with a variety of cellular activities SH06_RS09905 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. SH06_RS09910 SM00387 Histidine kinase-like ATPases SH06_RS09915 SM00448 cheY-homologous receiver domain SH06_RS09915 SM00862 Transcriptional regulatory protein, C terminal SH06_RS09945 SM01329 SH06_RS09945 SH06_RS09965 SM00422 helix_turn_helix, mercury resistance SH06_RS09970 SM00052 Putative diguanylate phosphodiesterase SH06_RS09970 SM01034 Sensors of blue-light using FAD SH06_RS09995 SM00052 Putative diguanylate phosphodiesterase SH06_RS10110 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS10125 SM01005 Alanine racemase, C-terminal domain SH06_RS10130 SM01091 Transporter associated domain SH06_RS10170 SM01120 SH06_RS10170 SH06_RS10180 SM00091 PAS domain SH06_RS10180 SM00382 ATPases associated with a variety of cellular activities SH06_RS10185 SM00869 Autotransporter beta-domain SH06_RS10215 SM01400 SH06_RS10215 SH06_RS10235 SM00937 SH06_RS10235 SH06_RS10295 SM00421 helix_turn_helix, Lux Regulon SH06_RS10295 SM00448 cheY-homologous receiver domain SH06_RS10300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS10300 SM00387 Histidine kinase-like ATPases SH06_RS10315 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS10365 SM00448 cheY-homologous receiver domain SH06_RS10375 SM00528 Domain in histone-like proteins of HNS family SH06_RS10420 SM00382 ATPases associated with a variety of cellular activities SH06_RS10425 SM00382 ATPases associated with a variety of cellular activities SH06_RS10435 SM00155 Phospholipase D. Active site motifs. SH06_RS10520 SM00481 DNA polymerase alpha chain like domain SH06_RS10535 SM00363 S4 RNA-binding domain SH06_RS10545 SM00822 SH06_RS10545 SH06_RS10570 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH06_RS10570 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH06_RS10570 SM00493 SH06_RS10570 SH06_RS10605 SM00014 Acid phosphatase homologues SH06_RS10615 SM00028 Tetratricopeptide repeats SH06_RS10620 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH06_RS10635 SM00420 helix_turn_helix, Deoxyribose operon repressor SH06_RS10635 SM01134 SH06_RS10635 SH06_RS10645 SM00052 Putative diguanylate phosphodiesterase SH06_RS10645 SM00091 PAS domain SH06_RS10645 SM00267 diguanylate cyclase SH06_RS10655 SM00357 Cold shock protein domain SH06_RS10655 SM00955 SH06_RS10655 SH06_RS10675 SM00382 ATPases associated with a variety of cellular activities SH06_RS10680 SM00382 ATPases associated with a variety of cellular activities SH06_RS10715 SM01230 SH06_RS10715 SH06_RS10725 SM00530 Helix-turn-helix XRE-family like proteins SH06_RS10745 SM00382 ATPases associated with a variety of cellular activities SH06_RS10770 SM00450 Rhodanese Homology Domain SH06_RS10775 SM00642 Alpha-amylase domain SH06_RS10830 SM00354 helix_turn _helix lactose operon repressor SH06_RS10845 SM00091 PAS domain SH06_RS10845 SM00382 ATPases associated with a variety of cellular activities SH06_RS10855 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH06_RS10910 SM00100 Cyclic nucleotide-monophosphate binding domain SH06_RS10910 SM00419 helix_turn_helix, cAMP Regulatory protein SH06_RS10950 SM00463 Small MutS-related domain SH06_RS10955 SM00091 PAS domain SH06_RS10955 SM00267 diguanylate cyclase SH06_RS10970 SM00487 DEAD-like helicases superfamily SH06_RS10970 SM00490 helicase superfamily c-terminal domain SH06_RS11070 SM00470 ParB-like nuclease domain SH06_RS11125 SM00857 Resolvase, N terminal domain SH06_RS11145 SM00890 Domain of unknown function SH06_RS11180 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS11315 SM00195 Dual specificity phosphatase, catalytic domain SH06_RS11315 SM00404 Protein tyrosine phosphatase, catalytic domain motif SH06_RS11325 SM00382 ATPases associated with a variety of cellular activities SH06_RS11325 SM00487 DEAD-like helicases superfamily SH06_RS11325 SM00490 helicase superfamily c-terminal domain SH06_RS11325 SM00847 Helicase associated domain (HA2) Add an annotation SH06_RS11370 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH06_RS11370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS11370 SM00319 Homologues of the ligand binding domain of Tar SH06_RS11380 SM01150 SH06_RS11380 SH06_RS11430 SM01321 SH06_RS11430 SH06_RS11445 SM00530 Helix-turn-helix XRE-family like proteins SH06_RS11465 SM00530 Helix-turn-helix XRE-family like proteins SH06_RS11470 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS11480 SM00382 ATPases associated with a variety of cellular activities SH06_RS11525 SM00829 Enoylreductase SH06_RS11530 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS11530 SM00895 SH06_RS11530 SH06_RS11585 SM00903 Flavin reductase like domain SH06_RS11615 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS11640 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS11660 SM00530 Helix-turn-helix XRE-family like proteins SH06_RS11665 SM00829 Enoylreductase SH06_RS11670 SM00919 Malic enzyme, NAD binding domain SH06_RS11670 SM01274 SH06_RS11670 SH06_RS11690 SM00382 ATPases associated with a variety of cellular activities SH06_RS11695 SM00382 ATPases associated with a variety of cellular activities SH06_RS11720 SM00052 Putative diguanylate phosphodiesterase SH06_RS11720 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH06_RS11720 SM00091 PAS domain SH06_RS11720 SM00267 diguanylate cyclase SH06_RS11725 SM00267 diguanylate cyclase SH06_RS11760 SM00382 ATPases associated with a variety of cellular activities SH06_RS11775 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS11820 SM00530 Helix-turn-helix XRE-family like proteins SH06_RS11825 SM00869 Autotransporter beta-domain SH06_RS11845 SM00382 ATPases associated with a variety of cellular activities SH06_RS11865 SM01133 SH06_RS11865 SH06_RS11895 SM00267 diguanylate cyclase SH06_RS11935 SM00347 helix_turn_helix multiple antibiotic resistance protein SH06_RS11940 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS11965 SM00267 diguanylate cyclase SH06_RS11990 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS11990 SM00895 SH06_RS11990 SH06_RS12015 SM00857 Resolvase, N terminal domain SH06_RS12055 SM00357 Cold shock protein domain SH06_RS12080 SM00357 Cold shock protein domain SH06_RS12085 SM00357 Cold shock protein domain SH06_RS12095 SM00507 HNH nucleases SH06_RS12140 SM00530 Helix-turn-helix XRE-family like proteins SH06_RS12190 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH06_RS12220 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS12225 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS12305 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SH06_RS12305 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SH06_RS12330 SM00448 cheY-homologous receiver domain SH06_RS12330 SM00862 Transcriptional regulatory protein, C terminal SH06_RS12335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS12335 SM00387 Histidine kinase-like ATPases SH06_RS12335 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS12390 SM00354 helix_turn _helix lactose operon repressor SH06_RS12450 SM00900 SH06_RS12450 SH06_RS12460 SM00478 endonuclease III SH06_RS12460 SM00525 SH06_RS12460 SH06_RS12485 SM00363 S4 RNA-binding domain SH06_RS12510 SM00347 helix_turn_helix multiple antibiotic resistance protein SH06_RS12560 SM00479 SH06_RS12560 SH06_RS12565 SM00382 ATPases associated with a variety of cellular activities SH06_RS12565 SM00487 DEAD-like helicases superfamily SH06_RS12565 SM00490 helicase superfamily c-terminal domain SH06_RS12595 SM00354 helix_turn _helix lactose operon repressor SH06_RS12670 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain SH06_RS12695 SM00257 Lysin motif SH06_RS12715 SM00382 ATPases associated with a variety of cellular activities SH06_RS12775 SM00882 Coenzyme A transferase SH06_RS12785 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS12795 SM00893 Electron transfer flavoprotein domain SH06_RS12800 SM00893 Electron transfer flavoprotein domain SH06_RS12875 SM00411 bacterial (prokaryotic) histone like domain SH06_RS12880 SM00873 B3/4 domain SH06_RS12880 SM00874 tRNA synthetase B5 domain SH06_RS12880 SM00896 Ferredoxin-fold anticodon binding domain SH06_RS12910 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH06_RS12975 SM01060 SH06_RS12975 SH06_RS12990 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS13025 SM00465 GIY-YIG type nucleases (URI domain) SH06_RS13100 SM00382 ATPases associated with a variety of cellular activities SH06_RS13105 SM00450 Rhodanese Homology Domain SH06_RS13125 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SH06_RS13135 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH06_RS13135 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH06_RS13135 SM00493 SH06_RS13135 SH06_RS13165 SM00870 SH06_RS13165 SH06_RS13180 SM00420 helix_turn_helix, Deoxyribose operon repressor SH06_RS13180 SM01134 SH06_RS13180 SH06_RS13200 SM00829 Enoylreductase SH06_RS13225 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH06_RS13245 SM00763 PrkA AAA domain SH06_RS13255 SM00267 diguanylate cyclase SH06_RS13260 SM00267 diguanylate cyclase SH06_RS13280 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS13300 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH06_RS13300 SM00267 diguanylate cyclase SH06_RS13335 SM01329 SH06_RS13335 SH06_RS13355 SM00341 Helicase and RNase D C-terminal SH06_RS13355 SM00474 3'-5' exonuclease SH06_RS13375 SM00487 DEAD-like helicases superfamily SH06_RS13375 SM00491 SH06_RS13375 SH06_RS13410 SM00052 Putative diguanylate phosphodiesterase SH06_RS13415 SM01091 Transporter associated domain SH06_RS13460 SM00357 Cold shock protein domain SH06_RS13490 SM00346 helix_turn_helix isocitrate lyase regulation SH06_RS13505 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH06_RS13505 SM00245 tail specific protease SH06_RS13510 SM00945 ProQ/FINO family SH06_RS13515 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH06_RS13580 SM00479 SH06_RS13580 SH06_RS13650 SM00257 Lysin motif SH06_RS13660 SM00382 ATPases associated with a variety of cellular activities SH06_RS13670 SM00382 ATPases associated with a variety of cellular activities SH06_RS13675 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH06_RS13750 SM00836 DALR anticodon binding domain SH06_RS13750 SM01016 Arginyl tRNA synthetase N terminal dom SH06_RS13780 SM00448 cheY-homologous receiver domain SH06_RS13785 SM00448 cheY-homologous receiver domain SH06_RS13790 SM00138 Methyltransferase, chemotaxis proteins SH06_RS13795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH06_RS13795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS13795 SM00319 Homologues of the ligand binding domain of Tar SH06_RS13800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH06_RS13800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS13800 SM00319 Homologues of the ligand binding domain of Tar SH06_RS13805 SM00260 Two component signalling adaptor domain SH06_RS13810 SM00073 Histidine Phosphotransfer domain SH06_RS13810 SM00260 Two component signalling adaptor domain SH06_RS13810 SM00387 Histidine kinase-like ATPases SH06_RS13810 SM01231 SH06_RS13810 SH06_RS13855 SM00382 ATPases associated with a variety of cellular activities SH06_RS13925 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH06_RS13925 SM00465 GIY-YIG type nucleases (URI domain) SH06_RS13930 SM00421 helix_turn_helix, Lux Regulon SH06_RS13930 SM00448 cheY-homologous receiver domain SH06_RS13945 SM00421 helix_turn_helix, Lux Regulon SH06_RS13950 SM00382 ATPases associated with a variety of cellular activities SH06_RS13965 SM00062 Bacterial periplasmic substrate-binding proteins SH06_RS13965 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH06_RS14000 SM00642 Alpha-amylase domain SH06_RS14065 SM00382 ATPases associated with a variety of cellular activities SH06_RS14115 SM00421 helix_turn_helix, Lux Regulon SH06_RS14135 SM00267 diguanylate cyclase SH06_RS14165 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH06_RS14195 SM00387 Histidine kinase-like ATPases SH06_RS14195 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS14200 SM00448 cheY-homologous receiver domain SH06_RS14200 SM00862 Transcriptional regulatory protein, C terminal SH06_RS14205 SM00095 Transthyretin SH06_RS14250 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins SH06_RS14250 SM00634 Bacterial Ig-like domain (group 1) SH06_RS14360 SM00869 Autotransporter beta-domain SH06_RS14415 SM00871 Bacterial transcription activator, effector binding domain SH06_RS14420 SM00936 Penicillin-binding protein 5, C-terminal domain SH06_RS14425 SM00479 SH06_RS14425 SH06_RS14510 SM00984 UDP binding domain SH06_RS14515 SM01350 SH06_RS14515 SH06_RS14675 SM00226 Low molecular weight phosphatase family SH06_RS14685 SM00116 Domain in cystathionine beta-synthase and other proteins. SH06_RS14685 SM01091 Transporter associated domain SH06_RS14705 SM00052 Putative diguanylate phosphodiesterase SH06_RS14705 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH06_RS14705 SM00091 PAS domain SH06_RS14705 SM00267 diguanylate cyclase SH06_RS14710 SM00478 endonuclease III SH06_RS14710 SM01009 AlkA N-terminal domain SH06_RS14740 SM00327 von Willebrand factor (vWF) type A domain SH06_RS14765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS14765 SM00387 Histidine kinase-like ATPases SH06_RS14765 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS14770 SM00448 cheY-homologous receiver domain SH06_RS14770 SM00862 Transcriptional regulatory protein, C terminal SH06_RS14800 SM00046 Diacylglycerol kinase catalytic domain (presumed) SH06_RS14805 SM01134 SH06_RS14805 SH06_RS14820 SM00420 helix_turn_helix, Deoxyribose operon repressor SH06_RS14825 SM00829 Enoylreductase SH06_RS14855 SM01133 SH06_RS14855 SH06_RS14875 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS14875 SM00866 SH06_RS14875 SH06_RS14880 SM00641 Glycosyl hydrolases family 25 SH06_RS14950 SM00773 Proposed nucleic acid binding domain SH06_RS14970 SM00382 ATPases associated with a variety of cellular activities SH06_RS14980 SM00327 von Willebrand factor (vWF) type A domain SH06_RS15000 SM00448 cheY-homologous receiver domain SH06_RS15000 SM00850 LytTr DNA-binding domain SH06_RS15005 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH06_RS15010 SM00422 helix_turn_helix, mercury resistance SH06_RS15025 SM00382 ATPases associated with a variety of cellular activities SH06_RS15040 SM01217 SH06_RS15040 SH06_RS15140 SM00354 helix_turn _helix lactose operon repressor SH06_RS15190 SM00518 AP endonuclease family 2 SH06_RS15210 SM00100 Cyclic nucleotide-monophosphate binding domain SH06_RS15255 SM00841 Elongation factor P, C-terminal SH06_RS15255 SM01185 SH06_RS15255 SH06_RS15265 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH06_RS15270 SM00014 Acid phosphatase homologues SH06_RS15280 SM00052 Putative diguanylate phosphodiesterase SH06_RS15300 SM00382 ATPases associated with a variety of cellular activities SH06_RS15315 SM00363 S4 RNA-binding domain SH06_RS15320 SM00487 DEAD-like helicases superfamily SH06_RS15320 SM00490 helicase superfamily c-terminal domain SH06_RS15350 SM00869 Autotransporter beta-domain SH06_RS15365 SM00421 helix_turn_helix, Lux Regulon SH06_RS15365 SM00448 cheY-homologous receiver domain SH06_RS15405 SM00382 ATPases associated with a variety of cellular activities SH06_RS15430 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS15460 SM00382 ATPases associated with a variety of cellular activities SH06_RS15470 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS15495 SM00387 Histidine kinase-like ATPases SH06_RS15500 SM00421 helix_turn_helix, Lux Regulon SH06_RS15500 SM00448 cheY-homologous receiver domain SH06_RS15505 SM00387 Histidine kinase-like ATPases SH06_RS15505 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS15505 SM00448 cheY-homologous receiver domain SH06_RS15510 SM00091 PAS domain SH06_RS15510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS15510 SM00387 Histidine kinase-like ATPases SH06_RS15510 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS15515 SM00382 ATPases associated with a variety of cellular activities SH06_RS15515 SM00448 cheY-homologous receiver domain SH06_RS15520 SM00882 Coenzyme A transferase SH06_RS15525 SM00882 Coenzyme A transferase SH06_RS15555 SM01359 SH06_RS15555 SH06_RS15555 SM01360 SH06_RS15555 SH06_RS15570 SM00434 DNA Topoisomerase IV SH06_RS15580 SM00869 Autotransporter beta-domain SH06_RS15665 SM00346 helix_turn_helix isocitrate lyase regulation SH06_RS15670 SM00852 Probable molybdopterin binding domain SH06_RS15735 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH06_RS15770 SM00849 Metallo-beta-lactamase superfamily SH06_RS15780 SM00327 von Willebrand factor (vWF) type A domain SH06_RS15845 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH06_RS15845 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SH06_RS15850 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SH06_RS15885 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH06_RS15950 SM00905 Dihydroneopterin aldolase SH06_RS15965 SM00382 ATPases associated with a variety of cellular activities SH06_RS15980 SM00062 Bacterial periplasmic substrate-binding proteins SH06_RS15985 SM00062 Bacterial periplasmic substrate-binding proteins SH06_RS16030 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH06_RS16050 SM00825 Beta-ketoacyl synthase SH06_RS16090 SM00463 Small MutS-related domain SH06_RS16285 SM00421 helix_turn_helix, Lux Regulon SH06_RS16285 SM00448 cheY-homologous receiver domain SH06_RS16290 SM00062 Bacterial periplasmic substrate-binding proteins SH06_RS16290 SM00073 Histidine Phosphotransfer domain SH06_RS16290 SM00387 Histidine kinase-like ATPases SH06_RS16290 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS16290 SM00448 cheY-homologous receiver domain SH06_RS16345 SM00387 Histidine kinase-like ATPases SH06_RS16350 SM00448 cheY-homologous receiver domain SH06_RS16350 SM00850 LytTr DNA-binding domain SH06_RS16355 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS16420 SM00052 Putative diguanylate phosphodiesterase SH06_RS16420 SM00267 diguanylate cyclase SH06_RS16510 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH06_RS16510 SM00292 breast cancer carboxy-terminal domain SH06_RS16510 SM00532 Ligase N family SH06_RS16515 SM00771 ZipA, C-terminal domain (FtsZ-binding) SH06_RS16555 SM00773 Proposed nucleic acid binding domain SH06_RS16565 SM00382 ATPases associated with a variety of cellular activities SH06_RS16585 SM00822 SH06_RS16585 SH06_RS16630 SM00646 SH06_RS16630 SH06_RS16640 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS16645 SM00877 SH06_RS16645 SH06_RS16650 SM00877 SH06_RS16650 SH06_RS16695 SM00877 SH06_RS16695 SH06_RS16720 SM00877 SH06_RS16720 SH06_RS16725 SM00919 Malic enzyme, NAD binding domain SH06_RS16725 SM01274 SH06_RS16725 SH06_RS16735 SM00861 Transketolase, pyrimidine binding domain SH06_RS16755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS16755 SM00387 Histidine kinase-like ATPases SH06_RS16815 SM01130 SH06_RS16815 SH06_RS16880 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH06_RS16880 SM00382 ATPases associated with a variety of cellular activities SH06_RS16940 SM00052 Putative diguanylate phosphodiesterase SH06_RS16940 SM00267 diguanylate cyclase SH06_RS16970 SM00116 Domain in cystathionine beta-synthase and other proteins. SH06_RS16970 SM01240 SH06_RS16970 SH06_RS16990 SM00564 beta-propeller repeat SH06_RS17010 SM00530 Helix-turn-helix XRE-family like proteins SH06_RS17020 SM00562 SH06_RS17020 SH06_RS17030 SM01359 SH06_RS17030 SH06_RS17030 SM01360 SH06_RS17030 SH06_RS17035 SM00450 Rhodanese Homology Domain SH06_RS17065 SM00271 DnaJ molecular chaperone homology domain SH06_RS17155 SM00829 Enoylreductase SH06_RS17165 SM00382 ATPases associated with a variety of cellular activities SH06_RS17175 SM00028 Tetratricopeptide repeats SH06_RS17195 SM00938 Nitrogen regulatory protein P-II SH06_RS17200 SM00382 ATPases associated with a variety of cellular activities SH06_RS17200 SM00448 cheY-homologous receiver domain SH06_RS17210 SM00387 Histidine kinase-like ATPases SH06_RS17210 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS17215 SM01211 SH06_RS17215 SH06_RS17220 SM00062 Bacterial periplasmic substrate-binding proteins SH06_RS17280 SM00358 Double-stranded RNA binding motif SH06_RS17280 SM00535 Ribonuclease III family SH06_RS17330 SM00487 DEAD-like helicases superfamily SH06_RS17330 SM00490 helicase superfamily c-terminal domain SH06_RS17355 SM00986 Uracil DNA glycosylase superfamily SH06_RS17355 SM00987 UreE urease accessory protein, C-terminal domain SH06_RS17360 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH06_RS17375 SM01144 SH06_RS17375 SH06_RS17380 SM00881 CoA binding domain SH06_RS17385 SM00155 Phospholipase D. Active site motifs. SH06_RS17425 SM00382 ATPases associated with a variety of cellular activities SH06_RS17425 SM01086 C-terminal, D2-small domain, of ClpB protein SH06_RS17435 SM00363 S4 RNA-binding domain SH06_RS17455 SM00830 Chorismate mutase type II SH06_RS17460 SM00830 Chorismate mutase type II SH06_RS17480 SM00267 diguanylate cyclase SH06_RS17510 SM00382 ATPases associated with a variety of cellular activities SH06_RS17510 SM00962 SRP54-type protein, GTPase domain SH06_RS17510 SM00963 SRP54-type protein, helical bundle domain SH06_RS17520 SM01091 Transporter associated domain SH06_RS17590 SM00487 DEAD-like helicases superfamily SH06_RS17590 SM00490 helicase superfamily c-terminal domain SH06_RS17755 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS17755 SM00895 SH06_RS17755 SH06_RS17760 SM00257 Lysin motif SH06_RS17760 SM00749 bacterial OsmY and nodulation domain SH06_RS17770 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH06_RS17775 SM00450 Rhodanese Homology Domain SH06_RS17780 SM00528 Domain in histone-like proteins of HNS family SH06_RS17820 SM00382 ATPases associated with a variety of cellular activities SH06_RS17850 SM00347 helix_turn_helix multiple antibiotic resistance protein SH06_RS17920 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH06_RS17945 SM01059 Chloramphenicol acetyltransferase SH06_RS17985 SM00420 helix_turn_helix, Deoxyribose operon repressor SH06_RS17985 SM01134 SH06_RS17985 SH06_RS17995 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH06_RS17995 SM00382 ATPases associated with a variety of cellular activities SH06_RS18000 SM00849 Metallo-beta-lactamase superfamily SH06_RS18020 SM00354 helix_turn _helix lactose operon repressor SH06_RS18110 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH06_RS18110 SM00382 ATPases associated with a variety of cellular activities SH06_RS18120 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SH06_RS18120 SM00534 ATPase domain of DNA mismatch repair MUTS family SH06_RS18130 SM00420 helix_turn_helix, Deoxyribose operon repressor SH06_RS18130 SM01134 SH06_RS18130 SH06_RS18145 SM01007 Class II Aldolase and Adducin N-terminal domain SH06_RS18165 SM00257 Lysin motif SH06_RS18235 SM01101 SH06_RS18235 SH06_RS18260 SM00487 DEAD-like helicases superfamily SH06_RS18260 SM00490 helicase superfamily c-terminal domain SH06_RS18305 SM00893 Electron transfer flavoprotein domain SH06_RS18350 SM01192 SH06_RS18350 SH06_RS18350 SM01193 SH06_RS18350 SH06_RS18370 SM00966 SpoVT / AbrB like domain SH06_RS18375 SM00954 Region found in RelA / SpoT proteins SH06_RS18385 SM00073 Histidine Phosphotransfer domain SH06_RS18385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS18385 SM00387 Histidine kinase-like ATPases SH06_RS18385 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS18385 SM00448 cheY-homologous receiver domain SH06_RS18390 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH06_RS18395 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH06_RS18450 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH06_RS18450 SM00475 5'-3' exonuclease SH06_RS18460 SM01007 Class II Aldolase and Adducin N-terminal domain SH06_RS18485 SM00420 helix_turn_helix, Deoxyribose operon repressor SH06_RS18485 SM01134 SH06_RS18485 SH06_RS18525 SM00925 MltA specific insert domain SH06_RS18545 SM00646 SH06_RS18545 SH06_RS18605 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH06_RS18625 SM00927 DNA mismatch repair enzyme MutH SH06_RS18650 SM00563 Phosphate acyltransferases SH06_RS18655 SM00354 helix_turn _helix lactose operon repressor SH06_RS18705 SM00862 Transcriptional regulatory protein, C terminal SH06_RS18730 SM00028 Tetratricopeptide repeats SH06_RS18730 SM00862 Transcriptional regulatory protein, C terminal SH06_RS18745 SM00421 helix_turn_helix, Lux Regulon SH06_RS18795 SM00257 Lysin motif SH06_RS18800 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH06_RS18805 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH06_RS18815 SM00091 PAS domain SH06_RS18815 SM00382 ATPases associated with a variety of cellular activities SH06_RS18870 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH06_RS18875 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH06_RS18930 SM00937 SH06_RS18930 SH06_RS18975 SM01022 SH06_RS18975 SH06_RS19015 SM01011 Aminopeptidase P, N-terminal domain SH06_RS19105 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH06_RS19140 SM00861 Transketolase, pyrimidine binding domain SH06_RS19185 SM00731 SprT homologues. SH06_RS19210 SM00732 Likely ribonuclease with RNase H fold. SH06_RS19215 SM00382 ATPases associated with a variety of cellular activities SH06_RS19230 SM01152 SH06_RS19230 SH06_RS19240 SM00729 Elongator protein 3, MiaB family, Radical SAM SH06_RS19250 SM00870 SH06_RS19250 SH06_RS19275 SM00478 endonuclease III SH06_RS19275 SM00525 SH06_RS19275 SH06_RS19335 SM01276 SH06_RS19335 SH06_RS19375 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS19375 SM00895 SH06_RS19375 SH06_RS19520 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS19550 SM00729 Elongator protein 3, MiaB family, Radical SAM SH06_RS19560 SM00563 Phosphate acyltransferases SH06_RS19565 SM00434 DNA Topoisomerase IV SH06_RS19575 SM00530 Helix-turn-helix XRE-family like proteins SH06_RS19585 SM00871 Bacterial transcription activator, effector binding domain SH06_RS19595 SM00448 cheY-homologous receiver domain SH06_RS19595 SM00862 Transcriptional regulatory protein, C terminal SH06_RS19600 SM00387 Histidine kinase-like ATPases SH06_RS19600 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS19620 SM00387 Histidine kinase-like ATPases SH06_RS19620 SM00433 TopoisomeraseII SH06_RS19730 SM00244 prohibitin homologues SH06_RS19755 SM01118 SH06_RS19755 SH06_RS19765 SM00287 Bacterial SH3 domain homologues SH06_RS19780 SM00905 Dihydroneopterin aldolase SH06_RS19785 SM01207 SH06_RS19785 SH06_RS19820 SM00400 zinc finger SH06_RS19820 SM00493 SH06_RS19820 SH06_RS19820 SM00766 DNA primase DnaG DnaB-binding SH06_RS19850 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH06_RS19850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH06_RS19865 SM00354 helix_turn _helix lactose operon repressor SH06_RS19870 SM01038 Beta galactosidase small chain SH06_RS19900 SM00530 Helix-turn-helix XRE-family like proteins SH06_RS19950 SM00858 SH06_RS19950 SH06_RS19965 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS19965 SM00895 SH06_RS19965 SH06_RS20125 SM00858 SH06_RS20125 SH06_RS20140 SM00420 helix_turn_helix, Deoxyribose operon repressor SH06_RS20140 SM01134 SH06_RS20140 SH06_RS20235 SM00749 bacterial OsmY and nodulation domain SH06_RS20245 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH06_RS20260 SM00465 GIY-YIG type nucleases (URI domain) SH06_RS20300 SM00487 DEAD-like helicases superfamily SH06_RS20300 SM00490 helicase superfamily c-terminal domain SH06_RS20305 SM00028 Tetratricopeptide repeats SH06_RS20310 SM00316 Ribosomal protein S1-like RNA-binding domain SH06_RS20310 SM00322 K homology RNA-binding domain SH06_RS20315 SM01387 SH06_RS20315 SH06_RS20335 SM00316 Ribosomal protein S1-like RNA-binding domain SH06_RS20380 SM00382 ATPases associated with a variety of cellular activities SH06_RS20390 SM01103 SH06_RS20390 SH06_RS20465 SM00382 ATPases associated with a variety of cellular activities SH06_RS20495 SM00382 ATPases associated with a variety of cellular activities SH06_RS20570 SM01130 SH06_RS20570 SH06_RS20575 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS20575 SM00895 SH06_RS20575 SH06_RS20615 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH06_RS20620 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH06_RS20675 SM00316 Ribosomal protein S1-like RNA-binding domain SH06_RS20705 SM00052 Putative diguanylate phosphodiesterase SH06_RS20705 SM00267 diguanylate cyclase SH06_RS20710 SM00829 Enoylreductase SH06_RS20735 SM00878 Biotin carboxylase C-terminal domain SH06_RS20800 SM00062 Bacterial periplasmic substrate-binding proteins SH06_RS20815 SM00382 ATPases associated with a variety of cellular activities SH06_RS20920 SM00422 helix_turn_helix, mercury resistance SH06_RS20935 SM00662 RNA polymerases D SH06_RS20940 SM00363 S4 RNA-binding domain SH06_RS20940 SM01390 SH06_RS20940 SH06_RS21005 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH06_RS21010 SM01374 SH06_RS21010 SH06_RS21030 SM00322 K homology RNA-binding domain SH06_RS21045 SM01382 SH06_RS21045 SH06_RS21045 SM01383 SH06_RS21045 SH06_RS21065 SM01403 SH06_RS21065 SH06_RS21090 SM00382 ATPases associated with a variety of cellular activities SH06_RS21150 SM00495 Chitin-binding domain type 3 SH06_RS21160 SM00838 Elongation factor G C-terminus SH06_RS21160 SM00889 Elongation factor G, domain IV SH06_RS21225 SM00382 ATPases associated with a variety of cellular activities SH06_RS21255 SM00100 Cyclic nucleotide-monophosphate binding domain SH06_RS21255 SM00419 helix_turn_helix, cAMP Regulatory protein SH06_RS21340 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS21340 SM00866 SH06_RS21340 SH06_RS21420 SM00965 Secretin and TonB N terminus short domain SH06_RS21465 SM00363 S4 RNA-binding domain SH06_RS21490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH06_RS21490 SM00387 Histidine kinase-like ATPases SH06_RS21490 SM00388 His Kinase A (phosphoacceptor) domain SH06_RS21495 SM00448 cheY-homologous receiver domain SH06_RS21495 SM00862 Transcriptional regulatory protein, C terminal SH06_RS21505 SM00316 Ribosomal protein S1-like RNA-binding domain SH06_RS21505 SM00732 Likely ribonuclease with RNase H fold. SH06_RS21510 SM00899 SH06_RS21510 SH06_RS21560 SM00421 helix_turn_helix, Lux Regulon SH06_RS21575 SM00382 ATPases associated with a variety of cellular activities SH06_RS21580 SM00420 helix_turn_helix, Deoxyribose operon repressor SH06_RS21580 SM01134 SH06_RS21580 SH06_RS21590 SM00450 Rhodanese Homology Domain SH06_RS21620 SM00642 Alpha-amylase domain SH06_RS21625 SM00642 Alpha-amylase domain SH06_RS21630 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH06_RS21650 SM00354 helix_turn _helix lactose operon repressor SH06_RS21705 SM00382 ATPases associated with a variety of cellular activities SH06_RS21730 SM00382 ATPases associated with a variety of cellular activities SH06_RS21735 SM00382 ATPases associated with a variety of cellular activities SH06_RS21780 SM00382 ATPases associated with a variety of cellular activities SH06_RS21785 SM00382 ATPases associated with a variety of cellular activities SH06_RS21785 SM00962 SRP54-type protein, GTPase domain SH06_RS21785 SM00963 SRP54-type protein, helical bundle domain SH06_RS21860 SM00382 ATPases associated with a variety of cellular activities SH06_RS21865 SM00382 ATPases associated with a variety of cellular activities SH06_RS21900 SM00382 ATPases associated with a variety of cellular activities SH06_RS21990 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH06_RS22025 SM00421 helix_turn_helix, Lux Regulon SH06_RS22070 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS22075 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS22085 SM01235 SH06_RS22085 SH06_RS22095 SM00421 helix_turn_helix, Lux Regulon SH06_RS22120 SM00052 Putative diguanylate phosphodiesterase SH06_RS22145 SM00052 Putative diguanylate phosphodiesterase SH06_RS22145 SM00267 diguanylate cyclase SH06_RS22150 SM00028 Tetratricopeptide repeats SH06_RS22215 SM00382 ATPases associated with a variety of cellular activities SH06_RS22220 SM00382 ATPases associated with a variety of cellular activities SH06_RS22300 SM00530 Helix-turn-helix XRE-family like proteins SH06_RS22305 SM00357 Cold shock protein domain SH06_RS22380 SM00382 ATPases associated with a variety of cellular activities SH06_RS22390 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS22395 SM00047 Lysozyme subfamily 2 SH06_RS22400 SM00642 Alpha-amylase domain SH06_RS22420 SM00346 helix_turn_helix isocitrate lyase regulation SH06_RS22455 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH06_RS22465 SM01007 Class II Aldolase and Adducin N-terminal domain SH06_RS22585 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS22585 SM00895 SH06_RS22585 SH06_RS22600 SM00971 Serine acetyltransferase, N-terminal SH06_RS22620 SM00450 Rhodanese Homology Domain SH06_RS22645 SM00829 Enoylreductase SH06_RS22740 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SH06_RS22740 SM01232 SH06_RS22740 SH06_RS22800 SM00532 Ligase N family SH06_RS22805 SM00072 Guanylate kinase homologues. SH06_RS22810 SM01409 SH06_RS22810 SH06_RS22815 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH06_RS22815 SM00954 Region found in RelA / SpoT proteins SH06_RS22825 SM00487 DEAD-like helicases superfamily SH06_RS22825 SM00490 helicase superfamily c-terminal domain SH06_RS22920 SM00387 Histidine kinase-like ATPases SH06_RS22925 SM00421 helix_turn_helix, Lux Regulon SH06_RS22925 SM00448 cheY-homologous receiver domain SH06_RS22995 SM00342 helix_turn_helix, arabinose operon control protein SH06_RS23015 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS23015 SM00866 SH06_RS23015 SH06_RS23055 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH06_RS23070 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH06_RS23070 SM00895 SH06_RS23070 SH06_RS23095 SM00387 Histidine kinase-like ATPases SH06_RS23095 SM00433 TopoisomeraseII SH06_RS23105 SM00480 DNA polymerase III beta subunit SH06_RS23110 SM00382 ATPases associated with a variety of cellular activities SH06_RS23110 SM00760 Bacterial dnaA protein helix-turn-helix domain