locus-tag class description SH04_RS00005 PF00468 Ribosomal protein L34 SH04_RS00010 PF00825 Ribonuclease P SH04_RS00015 PF01809 Putative membrane protein insertion efficiency factor SH04_RS00020 PF14849 YidC periplasmic domain SH04_RS00020 PF02096 60Kd inner membrane protein SH04_RS00025 PF12631 MnmE helical domain SH04_RS00025 PF01926 50S ribosome-binding GTPase SH04_RS00025 PF10396 GTP-binding protein TrmE N-terminus SH04_RS00030 PF08053 Tryptophanase operon leader peptide SH04_RS00035 PF01212 Beta-eliminating lyase SH04_RS00040 PF03222 Tryptophan/tyrosine permease family SH04_RS00045 PF07690 Major Facilitator Superfamily SH04_RS00050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS00050 PF03466 LysR substrate binding domain SH04_RS00060 PF03358 NADPH-dependent FMN reductase SH04_RS00065 PF00860 Permease family SH04_RS00070 PF13419 Haloacid dehalogenase-like hydrolase SH04_RS00080 PF03691 Uncharacterised protein family (UPF0167) SH04_RS00085 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH04_RS00090 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH04_RS00090 PF00756 Putative esterase SH04_RS00095 PF02264 LamB porin SH04_RS00095 PF11471 Maltoporin periplasmic N-terminal extension SH04_RS00100 PF00232 Glycosyl hydrolase family 1 SH04_RS00105 PF02378 Phosphotransferase system, EIIC SH04_RS00105 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH04_RS00105 PF00367 phosphotransferase system, EIIB SH04_RS00110 PF03123 CAT RNA binding domain SH04_RS00110 PF00874 PRD domain SH04_RS00115 PF01895 PhoU domain SH04_RS00120 PF00005 ABC transporter SH04_RS00125 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS00130 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS00135 PF12849 PBP superfamily domain SH04_RS00140 PF01380 SIS domain SH04_RS00145 PF12804 MobA-like NTP transferase domain SH04_RS00145 PF14602 Hexapeptide repeat of succinyl-transferase SH04_RS00145 PF00132 Bacterial transferase hexapeptide (six repeats) SH04_RS00150 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SH04_RS00150 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SH04_RS00155 PF02874 ATP synthase alpha/beta family, beta-barrel domain SH04_RS00155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH04_RS00160 PF00231 ATP synthase SH04_RS00165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH04_RS00165 PF00306 ATP synthase alpha/beta chain, C terminal domain SH04_RS00165 PF02874 ATP synthase alpha/beta family, beta-barrel domain SH04_RS00170 PF00213 ATP synthase delta (OSCP) subunit SH04_RS00175 PF00430 ATP synthase B/B' CF(0) SH04_RS00180 PF00137 ATP synthase subunit C SH04_RS00185 PF00119 ATP synthase A chain SH04_RS00190 PF03899 ATP synthase I chain SH04_RS00195 PF02527 rRNA small subunit methyltransferase G SH04_RS00200 PF13932 GidA associated domain SH04_RS00200 PF01134 Glucose inhibited division protein A SH04_RS00205 PF00258 Flavodoxin SH04_RS00210 PF01037 Lrp/AsnC ligand binding domain SH04_RS00215 PF03590 Aspartate-ammonia ligase SH04_RS00220 PF05762 VWA domain containing CoxE-like protein SH04_RS00225 PF17868 AAA lid domain SH04_RS00225 PF07728 AAA domain (dynein-related subfamily) SH04_RS00225 PF12592 Protein of unknown function (DUF3763) SH04_RS00230 PF02705 K+ potassium transporter SH04_RS00235 PF05025 RbsD / FucU transport protein family SH04_RS00240 PF00005 ABC transporter SH04_RS00245 PF02653 Branched-chain amino acid transport system / permease component SH04_RS00250 PF13407 Periplasmic binding protein domain SH04_RS00255 PF00294 pfkB family carbohydrate kinase SH04_RS00260 PF00356 Bacterial regulatory proteins, lacI family SH04_RS00265 PF07690 Major Facilitator Superfamily SH04_RS00270 PF07729 FCD domain SH04_RS00270 PF00392 Bacterial regulatory proteins, gntR family SH04_RS00305 PF03466 LysR substrate binding domain SH04_RS00305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS00310 PF04219 Protein of unknown function, DUF SH04_RS00315 PF13335 Magnesium chelatase, subunit ChlI C-terminal SH04_RS00315 PF01078 Magnesium chelatase, subunit ChlI SH04_RS00320 PF08046 IlvGEDA operon leader peptide SH04_RS00335 PF01063 Amino-transferase class IV SH04_RS00340 PF00920 Dehydratase family SH04_RS00345 PF00291 Pyridoxal-phosphate dependent enzyme SH04_RS00345 PF00585 C-terminal regulatory domain of Threonine dehydratase SH04_RS00350 PF03466 LysR substrate binding domain SH04_RS00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS00355 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SH04_RS00355 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SH04_RS00370 PF00580 UvrD/REP helicase N-terminal domain SH04_RS00370 PF13361 UvrD-like helicase C-terminal domain SH04_RS00375 PF02541 Ppx/GppA phosphatase family SH04_RS00380 PF00271 Helicase conserved C-terminal domain SH04_RS00380 PF00270 DEAD/DEAH box helicase SH04_RS00385 PF00085 Thioredoxin SH04_RS00395 PF07498 Rho termination factor, N-terminal domain SH04_RS00395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH04_RS00395 PF07497 Rho termination factor, RNA-binding domain SH04_RS00405 PF00953 Glycosyl transferase family 4 SH04_RS00410 PF02706 Chain length determinant protein SH04_RS00415 PF02350 UDP-N-acetylglucosamine 2-epimerase SH04_RS00420 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SH04_RS00420 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SH04_RS00420 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SH04_RS00425 PF16363 GDP-mannose 4,6 dehydratase SH04_RS00430 PF00483 Nucleotidyl transferase SH04_RS00440 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SH04_RS00445 PF01943 Polysaccharide biosynthesis protein SH04_RS00450 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 SH04_RS00455 PF06899 WzyE protein, O-antigen assembly polymerase SH04_RS00460 PF03808 Glycosyl transferase WecB/TagA/CpsF family SH04_RS00465 PF00324 Amino acid permease SH04_RS00490 PF13186 Iron-sulfur cluster-binding domain SH04_RS00490 PF04055 Radical SAM superfamily SH04_RS00495 PF00884 Sulfatase SH04_RS00500 PF07719 Tetratricopeptide repeat SH04_RS00500 PF07219 HemY protein N-terminus SH04_RS00505 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase SH04_RS00510 PF02602 Uroporphyrinogen-III synthase HemD SH04_RS00515 PF03900 Porphobilinogen deaminase, C-terminal domain SH04_RS00515 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SH04_RS00520 PF12633 Adenylate cyclase NT domain SH04_RS00520 PF01295 Adenylate cyclase, class-I SH04_RS00525 PF01491 Frataxin-like domain SH04_RS00530 PF13627 Prokaryotic lipoprotein-attachment site SH04_RS00535 PF01678 Diaminopimelate epimerase SH04_RS00540 PF04340 Protein of unknown function, DUF484 SH04_RS00545 PF00589 Phage integrase family SH04_RS00545 PF02899 Phage integrase, N-terminal SAM-like domain SH04_RS00550 PF13419 Haloacid dehalogenase-like hydrolase SH04_RS00555 PF13361 UvrD-like helicase C-terminal domain SH04_RS00555 PF00580 UvrD/REP helicase N-terminal domain SH04_RS00560 PF09992 Phosphodiester glycosidase SH04_RS00570 PF01544 CorA-like Mg2+ transporter protein SH04_RS00575 PF10947 Protein of unknown function (DUF2628) SH04_RS00585 PF00892 EamA-like transporter family SH04_RS00590 PF03061 Thioesterase superfamily SH04_RS00595 PF02253 Phospholipase A1 SH04_RS00600 PF00570 HRDC domain SH04_RS00600 PF00270 DEAD/DEAH box helicase SH04_RS00600 PF16124 RecQ zinc-binding SH04_RS00600 PF00271 Helicase conserved C-terminal domain SH04_RS00600 PF09382 RQC domain SH04_RS00605 PF01810 LysE type translocator SH04_RS00610 PF01810 LysE type translocator SH04_RS00615 PF12146 Serine aminopeptidase, S33 SH04_RS00625 PF00892 EamA-like transporter family SH04_RS00630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS00630 PF03466 LysR substrate binding domain SH04_RS00635 PF08267 Cobalamin-independent synthase, N-terminal domain SH04_RS00635 PF01717 Cobalamin-independent synthase, Catalytic domain SH04_RS00640 PF01738 Dienelactone hydrolase family SH04_RS00645 PF01048 Phosphorylase superfamily SH04_RS00650 PF02646 RmuC family SH04_RS00655 PF01209 ubiE/COQ5 methyltransferase family SH04_RS00660 PF02036 SCP-2 sterol transfer family SH04_RS00665 PF03109 ABC1 family SH04_RS00670 PF02416 mttA/Hcf106 family SH04_RS00680 PF00902 Sec-independent protein translocase protein (TatC) SH04_RS00685 PF01026 TatD related DNase SH04_RS00690 PF02357 Transcription termination factor nusG SH04_RS00695 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SH04_RS00700 PF00970 Oxidoreductase FAD-binding domain SH04_RS00700 PF00175 Oxidoreductase NAD-binding domain SH04_RS00705 PF00108 Thiolase, N-terminal domain SH04_RS00705 PF02803 Thiolase, C-terminal domain SH04_RS00710 PF00378 Enoyl-CoA hydratase/isomerase SH04_RS00710 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH04_RS00710 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH04_RS00715 PF00557 Metallopeptidase family M24 SH04_RS00720 PF01205 Uncharacterized protein family UPF0029 SH04_RS00720 PF09186 Domain of unknown function (DUF1949) SH04_RS00725 PF02386 Cation transport protein SH04_RS00730 PF12724 Flavodoxin domain SH04_RS00760 PF03205 Molybdopterin guanine dinucleotide synthesis protein B SH04_RS00765 PF12804 MobA-like NTP transferase domain SH04_RS00770 PF06288 Protein of unknown function (DUF1040) SH04_RS00775 PF01636 Phosphotransferase enzyme family SH04_RS00780 PF01323 DSBA-like thioredoxin domain SH04_RS00785 PF06097 Bacterial protein of unknown function (DUF945) SH04_RS00790 PF01553 Acyltransferase SH04_RS00800 PF01367 5'-3' exonuclease, C-terminal SAM fold SH04_RS00800 PF00476 DNA polymerase family A SH04_RS00800 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SH04_RS00800 PF01612 3'-5' exonuclease SH04_RS00805 PF01926 50S ribosome-binding GTPase SH04_RS00810 PF04220 Der GTPase activator (YihI) SH04_RS00815 PF04055 Radical SAM superfamily SH04_RS00815 PF06969 HemN C-terminal domain SH04_RS00825 PF00158 Sigma-54 interaction domain SH04_RS00825 PF00072 Response regulator receiver domain SH04_RS00825 PF02954 Bacterial regulatory protein, Fis family SH04_RS00830 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS00830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS00830 PF00989 PAS fold SH04_RS00835 PF03951 Glutamine synthetase, beta-Grasp domain SH04_RS00835 PF00120 Glutamine synthetase, catalytic domain SH04_RS00845 PF03144 Elongation factor Tu domain 2 SH04_RS00845 PF00009 Elongation factor Tu GTP binding domain SH04_RS00845 PF00679 Elongation factor G C-terminus SH04_RS00850 PF00392 Bacterial regulatory proteins, gntR family SH04_RS00850 PF07702 UTRA domain SH04_RS00855 PF01261 Xylose isomerase-like TIM barrel SH04_RS00860 PF07690 Major Facilitator Superfamily SH04_RS00865 PF06178 Oligogalacturonate-specific porin protein (KdgM) SH04_RS00880 PF01055 Glycosyl hydrolases family 31 SH04_RS00885 PF01263 Aldose 1-epimerase SH04_RS00895 PF01791 DeoC/LacD family aldolase SH04_RS00900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH04_RS00900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH04_RS00905 PF00294 pfkB family carbohydrate kinase SH04_RS00910 PF08220 DeoR-like helix-turn-helix domain SH04_RS00910 PF00455 DeoR C terminal sensor domain SH04_RS00915 PF13419 Haloacid dehalogenase-like hydrolase SH04_RS00920 PF03631 Virulence factor BrkB SH04_RS00925 PF02580 D-Tyr-tRNA(Tyr) deacylase SH04_RS00930 PF09500 Putative thioesterase (yiiD_Cterm) SH04_RS00930 PF00583 Acetyltransferase (GNAT) family SH04_RS00935 PF01402 Ribbon-helix-helix protein, copG family SH04_RS00950 PF04216 Protein involved in formate dehydrogenase formation SH04_RS00955 PF01292 Prokaryotic cytochrome b561 SH04_RS00960 PF13247 4Fe-4S dicluster domain SH04_RS00960 PF09163 Formate dehydrogenase N, transmembrane SH04_RS00965 PF01568 Molydopterin dinucleotide binding domain SH04_RS00965 PF00384 Molybdopterin oxidoreductase SH04_RS00965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS00970 PF00384 Molybdopterin oxidoreductase SH04_RS00970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS00970 PF01568 Molydopterin dinucleotide binding domain SH04_RS00975 PF02634 FdhD/NarQ family SH04_RS00980 PF12889 Protein of unknown function (DUF3829) SH04_RS00985 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH04_RS00985 PF08279 HTH domain SH04_RS00990 PF05343 M42 glutamyl aminopeptidase SH04_RS00995 PF02378 Phosphotransferase system, EIIC SH04_RS00995 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH04_RS01000 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH04_RS01005 PF05336 L-rhamnose mutarotase SH04_RS01010 PF00596 Class II Aldolase and Adducin N-terminal domain SH04_RS01015 PF06134 L-rhamnose isomerase (RhaA) SH04_RS01020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH04_RS01020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH04_RS01030 PF12833 Helix-turn-helix domain SH04_RS01030 PF02311 AraC-like ligand binding domain SH04_RS01035 PF02311 AraC-like ligand binding domain SH04_RS01035 PF12833 Helix-turn-helix domain SH04_RS01040 PF06379 L-rhamnose-proton symport protein (RhaT) SH04_RS01045 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SH04_RS01045 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SH04_RS01055 PF03812 2-keto-3-deoxygluconate permease SH04_RS01060 PF03475 3-alpha domain SH04_RS01060 PF03473 MOSC domain SH04_RS01065 PF00672 HAMP domain SH04_RS01065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS01065 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS01065 PF16527 Two-component sensor protein CpxA, periplasmic domain SH04_RS01070 PF00072 Response regulator receiver domain SH04_RS01070 PF00486 Transcriptional regulatory protein, C terminal SH04_RS01075 PF07813 LTXXQ motif family protein SH04_RS01080 PF16916 Dimerisation domain of Zinc Transporter SH04_RS01080 PF01545 Cation efflux family SH04_RS01085 PF00365 Phosphofructokinase SH04_RS01095 PF02611 CDP-diacylglycerol pyrophosphatase SH04_RS01100 PF00121 Triosephosphate isomerase SH04_RS01105 PF07305 Protein of unknown function (DUF1454) SH04_RS01110 PF05656 Protein of unknown function (DUF805) SH04_RS01115 PF04175 Protein of unknown function (DUF406) SH04_RS01120 PF00582 Universal stress protein family SH04_RS01125 PF00970 Oxidoreductase FAD-binding domain SH04_RS01125 PF00175 Oxidoreductase NAD-binding domain SH04_RS01130 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded SH04_RS01135 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH04_RS01135 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH04_RS01140 PF00230 Major intrinsic protein SH04_RS01145 PF06005 Cell division protein ZapB SH04_RS01150 PF03737 Aldolase/RraA SH04_RS01155 PF01040 UbiA prenyltransferase family SH04_RS01160 PF00004 ATPase family associated with various cellular activities (AAA) SH04_RS01160 PF07724 AAA domain (Cdc48 subfamily) SH04_RS01160 PF10431 C-terminal, D2-small domain, of ClpB protein SH04_RS01165 PF00227 Proteasome subunit SH04_RS01170 PF05036 Sporulation related domain SH04_RS01175 PF00356 Bacterial regulatory proteins, lacI family SH04_RS01180 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SH04_RS01180 PF17764 3′ DNA-binding domain (3′BD) SH04_RS01180 PF00270 DEAD/DEAH box helicase SH04_RS01180 PF18074 Primosomal protein N C-terminal domain SH04_RS01180 PF00271 Helicase conserved C-terminal domain SH04_RS01185 PF01197 Ribosomal protein L31 SH04_RS01190 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH04_RS01195 PF01340 Met Apo-repressor, MetJ SH04_RS01205 PF00696 Amino acid kinase family SH04_RS01205 PF03447 Homoserine dehydrogenase, NAD binding domain SH04_RS01205 PF00742 Homoserine dehydrogenase SH04_RS01215 PF02219 Methylenetetrahydrofolate reductase SH04_RS01220 PF00141 Peroxidase SH04_RS01225 PF00892 EamA-like transporter family SH04_RS01230 PF06940 Domain of unknown function (DUF1287) SH04_RS01240 PF00465 Iron-containing alcohol dehydrogenase SH04_RS01245 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH04_RS01250 PF00391 PEP-utilising enzyme, mobile domain SH04_RS01250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH04_RS01250 PF00381 PTS HPr component phosphorylation site SH04_RS01250 PF05524 PEP-utilising enzyme, N-terminal SH04_RS01250 PF02896 PEP-utilising enzyme, TIM barrel domain SH04_RS01260 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH04_RS01265 PF02901 Pyruvate formate lyase-like SH04_RS01265 PF01228 Glycine radical SH04_RS01270 PF04055 Radical SAM superfamily SH04_RS01275 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH04_RS01280 PF12833 Helix-turn-helix domain SH04_RS01285 PF00884 Sulfatase SH04_RS01290 PF00311 Phosphoenolpyruvate carboxylase SH04_RS01300 PF07687 Peptidase dimerisation domain SH04_RS01300 PF01546 Peptidase family M20/M25/M40 SH04_RS01305 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH04_RS01305 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH04_RS01310 PF00696 Amino acid kinase family SH04_RS01315 PF00206 Lyase SH04_RS01315 PF14698 Argininosuccinate lyase C-terminal SH04_RS01320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS01320 PF03466 LysR substrate binding domain SH04_RS01325 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH04_RS01325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH04_RS01330 PF00440 Bacterial regulatory proteins, tetR family SH04_RS01335 PF07226 Protein of unknown function (DUF1422) SH04_RS01340 PF05958 tRNA (Uracil-5-)-methyltransferase SH04_RS01345 PF07715 TonB-dependent Receptor Plug Domain SH04_RS01345 PF00593 TonB dependent receptor SH04_RS01350 PF01177 Asp/Glu/Hydantoin racemase SH04_RS01375 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SH04_RS01375 PF01565 FAD binding domain SH04_RS01380 PF03099 Biotin/lipoate A/B protein ligase family SH04_RS01380 PF02237 Biotin protein ligase C terminal domain SH04_RS01380 PF08279 HTH domain SH04_RS01385 PF00485 Phosphoribulokinase / Uridine kinase family SH04_RS01415 PF00009 Elongation factor Tu GTP binding domain SH04_RS01415 PF03144 Elongation factor Tu domain 2 SH04_RS01415 PF03143 Elongation factor Tu C-terminal domain SH04_RS01420 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SH04_RS01425 PF02357 Transcription termination factor nusG SH04_RS01425 PF00467 KOW motif SH04_RS01430 PF00298 Ribosomal protein L11, RNA binding domain SH04_RS01430 PF03946 Ribosomal protein L11, N-terminal domain SH04_RS01435 PF00687 Ribosomal protein L1p/L10e family SH04_RS01440 PF00466 Ribosomal protein L10 SH04_RS01445 PF16320 Ribosomal protein L7/L12 dimerisation domain SH04_RS01445 PF00542 Ribosomal protein L7/L12 C-terminal domain SH04_RS01450 PF04565 RNA polymerase Rpb2, domain 3 SH04_RS01450 PF04563 RNA polymerase beta subunit SH04_RS01450 PF04561 RNA polymerase Rpb2, domain 2 SH04_RS01450 PF00562 RNA polymerase Rpb2, domain 6 SH04_RS01450 PF10385 RNA polymerase beta subunit external 1 domain SH04_RS01450 PF04560 RNA polymerase Rpb2, domain 7 SH04_RS01455 PF05000 RNA polymerase Rpb1, domain 4 SH04_RS01455 PF04997 RNA polymerase Rpb1, domain 1 SH04_RS01455 PF04998 RNA polymerase Rpb1, domain 5 SH04_RS01455 PF04983 RNA polymerase Rpb1, domain 3 SH04_RS01455 PF00623 RNA polymerase Rpb1, domain 2 SH04_RS01465 PF06968 Biotin and Thiamin Synthesis associated domain SH04_RS01465 PF04055 Radical SAM superfamily SH04_RS01470 PF05690 Thiazole biosynthesis protein ThiG SH04_RS01475 PF02597 ThiS family SH04_RS01480 PF00899 ThiF family SH04_RS01485 PF02581 Thiamine monophosphate synthase SH04_RS01490 PF13667 ThiC-associated domain SH04_RS01490 PF01964 Radical SAM ThiC family SH04_RS01495 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ SH04_RS01500 PF00293 NUDIX domain SH04_RS01500 PF09297 NADH pyrophosphatase zinc ribbon domain SH04_RS01505 PF01208 Uroporphyrinogen decarboxylase (URO-D) SH04_RS01510 PF04493 Endonuclease V SH04_RS01515 PF04222 Protein of unknown function (DUF416) SH04_RS01520 PF00216 Bacterial DNA-binding protein SH04_RS01525 PF07356 Protein of unknown function (DUF1481) SH04_RS01530 PF13801 Heavy-metal resistance SH04_RS01535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS01535 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS01540 PF02954 Bacterial regulatory protein, Fis family SH04_RS01540 PF00072 Response regulator receiver domain SH04_RS01540 PF00158 Sigma-54 interaction domain SH04_RS01545 PF02844 Phosphoribosylglycinamide synthetase, N domain SH04_RS01545 PF02843 Phosphoribosylglycinamide synthetase, C domain SH04_RS01545 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SH04_RS01550 PF02142 MGS-like domain SH04_RS01550 PF01808 AICARFT/IMPCHase bienzyme SH04_RS01590 PF13673 Acetyltransferase (GNAT) domain SH04_RS01595 PF04204 Homoserine O-succinyltransferase SH04_RS01600 PF01274 Malate synthase SH04_RS01605 PF00463 Isocitrate lyase family SH04_RS01610 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) SH04_RS01615 PF07906 ShET2 enterotoxin, N-terminal region SH04_RS01620 PF01614 Bacterial transcriptional regulator SH04_RS01620 PF09339 IclR helix-turn-helix domain SH04_RS01625 PF00809 Pterin binding enzyme SH04_RS01625 PF02310 B12 binding domain SH04_RS01625 PF02574 Homocysteine S-methyltransferase SH04_RS01625 PF02965 Vitamin B12 dependent methionine synthase, activation domain SH04_RS01625 PF02607 B12 binding domain SH04_RS01630 PF02690 Na+/Pi-cotransporter SH04_RS01635 PF03575 Peptidase family S51 SH04_RS01640 PF00849 RNA pseudouridylate synthase SH04_RS01640 PF01479 S4 domain SH04_RS01645 PF11656 YjbD family (DUF3811) SH04_RS01650 PF01842 ACT domain SH04_RS01650 PF00696 Amino acid kinase family SH04_RS01655 PF00342 Phosphoglucose isomerase SH04_RS01660 PF03400 IS1 transposase SH04_RS01665 PF03811 InsA N-terminal domain SH04_RS01665 PF12759 InsA C-terminal domain SH04_RS01670 PF11106 Exopolysaccharide production protein YjbE SH04_RS01675 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF SH04_RS01680 PF06251 Capsule biosynthesis GfcC SH04_RS01685 PF06082 Exopolysaccharide biosynthesis protein YbjH SH04_RS01690 PF17089 Uncharacterised protein family SH04_RS01700 PF06146 Phosphate-starvation-inducible E SH04_RS01705 PF00083 Sugar (and other) transporter SH04_RS01710 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS01715 PF14785 Maltose transport system permease protein MalF P2 domain SH04_RS01715 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS01720 PF01547 Bacterial extracellular solute-binding protein SH04_RS01730 PF00005 ABC transporter SH04_RS01730 PF17912 MalK OB fold domain SH04_RS01735 PF02264 LamB porin SH04_RS01740 PF07148 Maltose operon periplasmic protein precursor (MalM) SH04_RS01750 PF13981 SopA-like central domain SH04_RS01750 PF13599 Pentapeptide repeats (9 copies) SH04_RS01755 PF04345 Chorismate lyase SH04_RS01760 PF01040 UbiA prenyltransferase family SH04_RS01765 PF01553 Acyltransferase SH04_RS01770 PF01219 Prokaryotic diacylglycerol kinase SH04_RS01775 PF00717 Peptidase S24-like SH04_RS01775 PF01726 LexA DNA binding domain SH04_RS01780 PF01554 MatE SH04_RS01785 PF05532 CsbD-like SH04_RS01790 PF01475 Ferric uptake regulator family SH04_RS01800 PF10897 Protein of unknown function (DUF2713) SH04_RS01805 PF01207 Dihydrouridine synthase (Dus) SH04_RS01810 PF09583 Phage shock protein G (Phageshock_PspG) SH04_RS01815 PF00107 Zinc-binding dehydrogenase SH04_RS01815 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS01820 PF00772 DnaB-like helicase N terminal domain SH04_RS01820 PF03796 DnaB-like helicase C terminal domain SH04_RS01825 PF01168 Alanine racemase, N-terminal domain SH04_RS01825 PF00842 Alanine racemase, C-terminal domain SH04_RS01830 PF00155 Aminotransferase class I and II SH04_RS01840 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SH04_RS01845 PF01894 Uncharacterised protein family UPF0047 SH04_RS01850 PF04237 YjbR SH04_RS01855 PF00005 ABC transporter SH04_RS01855 PF17760 UvrA interaction domain SH04_RS01855 PF17755 UvrA DNA-binding domain SH04_RS01860 PF00436 Single-strand binding protein family SH04_RS01865 PF15940 Family of unknown function SH04_RS01870 PF00563 EAL domain SH04_RS01870 PF12792 CSS motif domain associated with EAL SH04_RS01875 PF12833 Helix-turn-helix domain SH04_RS01880 PF00376 MerR family regulatory protein SH04_RS01880 PF09278 MerR, DNA binding SH04_RS01885 PF00860 Permease family SH04_RS01890 PF00999 Sodium/hydrogen exchanger family SH04_RS01895 PF00805 Pentapeptide repeats (8 copies) SH04_RS01900 PF00474 Sodium:solute symporter family SH04_RS01905 PF04341 Protein of unknown function, DUF485 SH04_RS01910 PF13193 AMP-binding enzyme C-terminal domain SH04_RS01910 PF00501 AMP-binding enzyme SH04_RS01910 PF16177 Acetyl-coenzyme A synthetase N-terminus SH04_RS01915 PF02335 Cytochrome c552 SH04_RS01920 PF13435 Cytochrome c554 and c-prime SH04_RS01920 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) SH04_RS01925 PF13247 4Fe-4S dicluster domain SH04_RS01925 PF00037 4Fe-4S binding domain SH04_RS01930 PF03916 Polysulphide reductase, NrfD SH04_RS01935 PF01578 Cytochrome C assembly protein SH04_RS01935 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SH04_RS01940 PF03918 Cytochrome C biogenesis protein SH04_RS01950 PF00375 Sodium:dicarboxylate symporter family SH04_RS01955 PF08238 Sel1 repeat SH04_RS01960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS01960 PF00384 Molybdopterin oxidoreductase SH04_RS01960 PF01568 Molydopterin dinucleotide binding domain SH04_RS01965 PF01568 Molydopterin dinucleotide binding domain SH04_RS01965 PF00384 Molybdopterin oxidoreductase SH04_RS01965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS01970 PF02321 Outer membrane efflux protein SH04_RS01975 PF04632 Fusaric acid resistance protein family SH04_RS01980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH04_RS01980 PF00529 HlyD membrane-fusion protein of T1SS SH04_RS01985 PF17090 Uncharacterised protein family SH04_RS01990 PF14864 Alkyl sulfatase C-terminal SH04_RS01990 PF00753 Metallo-beta-lactamase superfamily SH04_RS01990 PF14863 Alkyl sulfatase dimerisation SH04_RS01995 PF00480 ROK family SH04_RS02000 PF00834 Ribulose-phosphate 3 epimerase family SH04_RS02005 PF02653 Branched-chain amino acid transport system / permease component SH04_RS02010 PF00005 ABC transporter SH04_RS02015 PF13407 Periplasmic binding protein domain SH04_RS02020 PF01418 Helix-turn-helix domain, rpiR family SH04_RS02020 PF01380 SIS domain SH04_RS02025 PF02502 Ribose/Galactose Isomerase SH04_RS02035 PF12706 Beta-lactamase superfamily domain SH04_RS02040 PF00583 Acetyltransferase (GNAT) family SH04_RS02050 PF07969 Amidohydrolase family SH04_RS02055 PF00005 ABC transporter SH04_RS02060 PF00005 ABC transporter SH04_RS02065 PF06007 Phosphonate metabolism protein PhnJ SH04_RS02070 PF05861 Bacterial phosphonate metabolism protein (PhnI) SH04_RS02075 PF05845 Bacterial phosphonate metabolism protein (PhnH) SH04_RS02080 PF06754 Phosphonate metabolism protein PhnG SH04_RS02085 PF00392 Bacterial regulatory proteins, gntR family SH04_RS02085 PF07702 UTRA domain SH04_RS02100 PF00005 ABC transporter SH04_RS02105 PF06983 3-demethylubiquinone-9 3-methyltransferase SH04_RS02110 PF03831 PhnA domain SH04_RS02110 PF08274 PhnA Zinc-Ribbon SH04_RS02115 PF00350 Dynamin family SH04_RS02120 PF13990 YjcZ-like protein SH04_RS02125 PF08946 Osmosensory transporter coiled coil SH04_RS02125 PF00083 Sugar (and other) transporter SH04_RS02135 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS02135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS02140 PF00486 Transcriptional regulatory protein, C terminal SH04_RS02140 PF00072 Response regulator receiver domain SH04_RS02145 PF08019 Phosphoethanolamine transferase EptA/EptB SH04_RS02145 PF00884 Sulfatase SH04_RS02150 PF13520 Amino acid permease SH04_RS02155 PF12833 Helix-turn-helix domain SH04_RS02160 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH04_RS02160 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH04_RS02160 PF01276 Orn/Lys/Arg decarboxylase, major domain SH04_RS02165 PF12833 Helix-turn-helix domain SH04_RS02175 PF02056 Family 4 glycosyl hydrolase SH04_RS02175 PF11975 Family 4 glycosyl hydrolase C-terminal domain SH04_RS02185 PF09997 Predicted membrane protein (DUF2238) SH04_RS02190 PF05681 Fumarate hydratase (Fumerase) SH04_RS02190 PF05683 Fumarase C-terminus SH04_RS02195 PF03605 Anaerobic c4-dicarboxylate membrane transporter SH04_RS02205 PF00072 Response regulator receiver domain SH04_RS02210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS02210 PF00989 PAS fold SH04_RS02210 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SH04_RS02210 PF17203 Single cache domain 3 SH04_RS02215 PF06902 Divergent 4Fe-4S mono-cluster SH04_RS02220 PF14542 GCN5-related N-acetyl-transferase SH04_RS02225 PF11080 Endoribonuclease GhoS SH04_RS02230 PF10753 Toxin GhoT_OrtT SH04_RS02235 PF00152 tRNA synthetases class II (D, K and N) SH04_RS02235 PF01336 OB-fold nucleic acid binding domain SH04_RS02240 PF00854 POT family SH04_RS02245 PF01276 Orn/Lys/Arg decarboxylase, major domain SH04_RS02245 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH04_RS02245 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH04_RS02250 PF13520 Amino acid permease SH04_RS02255 PF18500 CadC C-terminal domain 1 SH04_RS02255 PF00486 Transcriptional regulatory protein, C terminal SH04_RS02270 PF11412 Disulphide bond corrector protein DsbC SH04_RS02270 PF02683 Cytochrome C biogenesis protein transmembrane region SH04_RS02275 PF03091 CutA1 divalent ion tolerance protein SH04_RS02280 PF03605 Anaerobic c4-dicarboxylate membrane transporter SH04_RS02285 PF10415 Fumarase C C-terminus SH04_RS02285 PF00206 Lyase SH04_RS02290 PF04186 FxsA cytoplasmic membrane protein SH04_RS02295 PF13520 Amino acid permease SH04_RS02300 PF00166 Chaperonin 10 Kd subunit SH04_RS02305 PF00118 TCP-1/cpn60 chaperonin family SH04_RS02310 PF13698 Domain of unknown function (DUF4156) SH04_RS02315 PF15922 YjeJ-like SH04_RS02320 PF04055 Radical SAM superfamily SH04_RS02325 PF01132 Elongation factor P (EF-P) OB domain SH04_RS02325 PF08207 Elongation factor P (EF-P) KOW-like domain SH04_RS02325 PF09285 Elongation factor P, C-terminal SH04_RS02330 PF08085 Entericidin EcnA/B family SH04_RS02335 PF08085 Entericidin EcnA/B family SH04_RS02340 PF00893 Small Multidrug Resistance protein SH04_RS02345 PF08212 Lipocalin-like domain SH04_RS02350 PF00144 Beta-lactamase SH04_RS02355 PF02313 Fumarate reductase subunit D SH04_RS02360 PF02300 Fumarate reductase subunit C SH04_RS02365 PF13085 2Fe-2S iron-sulfur cluster binding domain SH04_RS02365 PF13183 4Fe-4S dicluster domain SH04_RS02370 PF02910 Fumarate reductase flavoprotein C-term SH04_RS02370 PF00890 FAD binding domain SH04_RS02375 PF00152 tRNA synthetases class II (D, K and N) SH04_RS02380 PF13520 Amino acid permease SH04_RS02390 PF10840 Protein of unknown function (DUF2645) SH04_RS02395 PF00924 Mechanosensitive ion channel SH04_RS02395 PF12795 Mechanosensitive ion channel porin domain SH04_RS02395 PF12794 Mechanosensitive ion channel inner membrane domain 1 SH04_RS02400 PF02666 Phosphatidylserine decarboxylase SH04_RS02405 PF03193 RsgA GTPase SH04_RS02410 PF00929 Exonuclease SH04_RS02430 PF08331 Domain of unknown function (DUF1730) SH04_RS02435 PF01256 Carbohydrate kinase SH04_RS02435 PF03853 YjeF-related protein N-terminus SH04_RS02440 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SH04_RS02445 PF01520 N-acetylmuramoyl-L-alanine amidase SH04_RS02450 PF01119 DNA mismatch repair protein, C-terminal domain SH04_RS02450 PF08676 MutL C terminal dimerisation domain SH04_RS02460 PF17209 Hfq protein SH04_RS02465 PF16360 GTP-binding GTPase Middle Region SH04_RS02465 PF01926 50S ribosome-binding GTPase SH04_RS02465 PF13167 GTP-binding GTPase N-terminal SH04_RS02470 PF01145 SPFH domain / Band 7 family SH04_RS02470 PF12221 Bacterial membrane protein N terminal SH04_RS02475 PF01145 SPFH domain / Band 7 family SH04_RS02480 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) SH04_RS02485 PF00709 Adenylosuccinate synthetase SH04_RS02490 PF02082 Transcriptional regulator SH04_RS02495 PF17876 Cold shock domain SH04_RS02495 PF08461 Ribonuclease R winged-helix domain SH04_RS02495 PF08206 Ribonuclease B OB domain SH04_RS02495 PF00575 S1 RNA binding domain SH04_RS02495 PF00773 RNB domain SH04_RS02500 PF08032 RNA 2'-O ribose methyltransferase substrate binding SH04_RS02500 PF00588 SpoU rRNA Methylase family SH04_RS02505 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) SH04_RS02510 PF04012 PspA/IM30 family SH04_RS02515 PF10679 Protein of unknown function (DUF2491) SH04_RS02520 PF03994 Domain of Unknown Function (DUF350) SH04_RS02525 PF06693 Protein of unknown function (DUF1190) SH04_RS02530 PF03738 Glutathionylspermidine synthase preATP-grasp SH04_RS02535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH04_RS02535 PF18158 Adaptive response protein AidB N-terminal domain SH04_RS02535 PF02770 Acyl-CoA dehydrogenase, middle domain SH04_RS02540 PF07338 Protein of unknown function (DUF1471) SH04_RS02545 PF07338 Protein of unknown function (DUF1471) SH04_RS02550 PF00326 Prolyl oligopeptidase family SH04_RS02555 PF00455 DeoR C terminal sensor domain SH04_RS02555 PF08220 DeoR-like helix-turn-helix domain SH04_RS02565 PF03611 PTS system sugar-specific permease component SH04_RS02570 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH04_RS02575 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH04_RS02580 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH04_RS02585 PF01261 Xylose isomerase-like TIM barrel SH04_RS02590 PF00596 Class II Aldolase and Adducin N-terminal domain SH04_RS02595 PF07338 Protein of unknown function (DUF1471) SH04_RS02605 PF01250 Ribosomal protein S6 SH04_RS02610 PF00436 Single-strand binding protein family SH04_RS02615 PF01084 Ribosomal protein S18 SH04_RS02620 PF03948 Ribosomal protein L9, C-terminal domain SH04_RS02620 PF01281 Ribosomal protein L9, N-terminal domain SH04_RS02625 PF10887 Protein of unknown function (DUF2686) SH04_RS02630 PF17938 Tetracyclin repressor-like, C-terminal domain SH04_RS02635 PF08525 Opacity-associated protein A N-terminal motif SH04_RS02635 PF04225 Opacity-associated protein A LysM-like domain SH04_RS02640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH04_RS02640 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SH04_RS02645 PF00324 Amino acid permease SH04_RS02650 PF01814 Hemerythrin HHE cation binding domain SH04_RS02650 PF04405 Domain of Unknown function (DUF542) SH04_RS02655 PF00892 EamA-like transporter family SH04_RS02660 PF05368 NmrA-like family SH04_RS02665 PF01638 HxlR-like helix-turn-helix SH04_RS02670 PF00149 Calcineurin-like phosphoesterase SH04_RS02670 PF02872 5'-nucleotidase, C-terminal domain SH04_RS02675 PF00459 Inositol monophosphatase family SH04_RS02685 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) SH04_RS02690 PF06526 Protein of unknown function (DUF1107) SH04_RS02695 PF00571 CBS domain SH04_RS02695 PF01595 Cyclin M transmembrane N-terminal domain SH04_RS02695 PF03471 Transporter associated domain SH04_RS02700 PF01625 Peptide methionine sulfoxide reductase SH04_RS02710 PF07244 Surface antigen variable number repeat SH04_RS02710 PF01103 Surface antigen SH04_RS02710 PF17243 POTRA domain TamA domain 1 SH04_RS02715 PF04357 TamB, inner membrane protein subunit of TAM complex SH04_RS02720 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like SH04_RS02725 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SH04_RS02730 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SH04_RS02735 PF00719 Inorganic pyrophosphatase SH04_RS02740 PF13407 Periplasmic binding protein domain SH04_RS02745 PF00005 ABC transporter SH04_RS02750 PF02653 Branched-chain amino acid transport system / permease component SH04_RS02755 PF02653 Branched-chain amino acid transport system / permease component SH04_RS02760 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SH04_RS02765 PF08245 Mur ligase middle domain SH04_RS02765 PF01225 Mur ligase family, catalytic domain SH04_RS02765 PF02875 Mur ligase family, glutamate ligase domain SH04_RS02770 PF04751 Protein of unknown function (DUF615) SH04_RS02775 PF01523 Putative modulator of DNA gyrase SH04_RS02780 PF07361 Cytochrome b562 SH04_RS02790 PF13597 Anaerobic ribonucleoside-triphosphate reductase SH04_RS02790 PF03477 ATP cone domain SH04_RS02795 PF00128 Alpha amylase, catalytic domain SH04_RS02795 PF11941 Domain of unknown function (DUF3459) SH04_RS02800 PF00367 phosphotransferase system, EIIB SH04_RS02800 PF02378 Phosphotransferase system, EIIC SH04_RS02805 PF00356 Bacterial regulatory proteins, lacI family SH04_RS02810 PF00689 Cation transporting ATPase, C-terminus SH04_RS02810 PF00690 Cation transporter/ATPase, N-terminus SH04_RS02815 PF01042 Endoribonuclease L-PSP SH04_RS02820 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain SH04_RS02820 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain SH04_RS02825 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH04_RS02825 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH04_RS02830 PF08052 PyrBI operon leader peptide SH04_RS02840 PF01042 Endoribonuclease L-PSP SH04_RS02850 PF00440 Bacterial regulatory proteins, tetR family SH04_RS02855 PF04074 YhcH/YjgK/YiaL SH04_RS02865 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH04_RS02865 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH04_RS02870 PF06877 Regulator of ribonuclease activity B SH04_RS02875 PF00583 Acetyltransferase (GNAT) family SH04_RS02880 PF05987 Bacterial protein of unknown function (DUF898) SH04_RS02885 PF08264 Anticodon-binding domain of tRNA SH04_RS02885 PF00133 tRNA synthetases class I (I, L, M and V) SH04_RS02885 PF10458 Valyl tRNA synthetase tRNA binding arm SH04_RS02890 PF04364 DNA polymerase III chi subunit, HolC SH04_RS02895 PF00883 Cytosol aminopeptidase family, catalytic domain SH04_RS02895 PF02789 Cytosol aminopeptidase family, N-terminal domain SH04_RS02900 PF03739 Lipopolysaccharide export system permease LptF/LptG SH04_RS02905 PF03739 Lipopolysaccharide export system permease LptF/LptG SH04_RS02910 PF05872 Bacterial protein of unknown function (DUF853) SH04_RS02915 PF00356 Bacterial regulatory proteins, lacI family SH04_RS02920 PF02447 GntP family permease SH04_RS02925 PF00106 short chain dehydrogenase SH04_RS02930 PF00107 Zinc-binding dehydrogenase SH04_RS02930 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS02935 PF01202 Shikimate kinase SH04_RS02940 PF00107 Zinc-binding dehydrogenase SH04_RS02940 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS02950 PF13356 Arm DNA-binding domain SH04_RS02950 PF00589 Phage integrase family SH04_RS02960 PF01527 Transposase SH04_RS02965 PF13276 HTH-like domain SH04_RS02965 PF00665 Integrase core domain SH04_RS02995 PF01609 Transposase DDE domain SH04_RS02995 PF13006 Insertion element 4 transposase N-terminal SH04_RS03000 PF07690 Major Facilitator Superfamily SH04_RS03005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH04_RS03005 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH04_RS03010 PF16747 Surface-adhesin protein E SH04_RS03015 PF11700 Vacuole effluxer Atg22 like SH04_RS03020 PF01527 Transposase SH04_RS03025 PF13936 Helix-turn-helix domain SH04_RS03025 PF00665 Integrase core domain SH04_RS03030 PF01527 Transposase SH04_RS03045 PF00005 ABC transporter SH04_RS03050 PF01032 FecCD transport family SH04_RS03055 PF01032 FecCD transport family SH04_RS03060 PF01497 Periplasmic binding protein SH04_RS03065 PF00593 TonB dependent receptor SH04_RS03065 PF07715 TonB-dependent Receptor Plug Domain SH04_RS03065 PF07660 Secretin and TonB N terminus short domain SH04_RS03070 PF04773 FecR protein SH04_RS03070 PF16220 Domain of unknown function (DUF4880) SH04_RS03075 PF04542 Sigma-70 region 2 SH04_RS03075 PF08281 Sigma-70, region 4 SH04_RS03090 PF03400 IS1 transposase SH04_RS03095 PF04198 Putative sugar-binding domain SH04_RS03105 PF02447 GntP family permease SH04_RS03110 PF00920 Dehydratase family SH04_RS03115 PF00701 Dihydrodipicolinate synthetase family SH04_RS03120 PF01614 Bacterial transcriptional regulator SH04_RS03125 PF00455 DeoR C terminal sensor domain SH04_RS03125 PF08220 DeoR-like helix-turn-helix domain SH04_RS03130 PF00834 Ribulose-phosphate 3 epimerase family SH04_RS03135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH04_RS03140 PF03437 BtpA family SH04_RS03145 PF03611 PTS system sugar-specific permease component SH04_RS03150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH04_RS03155 PF05343 M42 glutamyl aminopeptidase SH04_RS03160 PF13847 Methyltransferase domain SH04_RS03165 PF00583 Acetyltransferase (GNAT) family SH04_RS03170 PF09857 Putative toxin of bacterial toxin-antitoxin pair SH04_RS03185 PF13087 AAA domain SH04_RS03185 PF13091 PLD-like domain SH04_RS03190 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase SH04_RS03200 PF06178 Oligogalacturonate-specific porin protein (KdgM) SH04_RS03215 PF00589 Phage integrase family SH04_RS03220 PF00589 Phage integrase family SH04_RS03230 PF00419 Fimbrial protein SH04_RS03235 PF00419 Fimbrial protein SH04_RS03240 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH04_RS03240 PF02753 Pili assembly chaperone PapD, C-terminal domain SH04_RS03245 PF13954 PapC N-terminal domain SH04_RS03245 PF00577 Outer membrane usher protein SH04_RS03245 PF13953 PapC C-terminal domain SH04_RS03250 PF00419 Fimbrial protein SH04_RS03260 PF00419 Fimbrial protein SH04_RS03260 PF09160 FimH, mannose binding SH04_RS03265 PF02447 GntP family permease SH04_RS03275 PF03786 D-mannonate dehydratase (UxuA) SH04_RS03280 PF01232 Mannitol dehydrogenase Rossmann domain SH04_RS03280 PF08125 Mannitol dehydrogenase C-terminal domain SH04_RS03290 PF07729 FCD domain SH04_RS03290 PF00392 Bacterial regulatory proteins, gntR family SH04_RS03295 PF10887 Protein of unknown function (DUF2686) SH04_RS03315 PF04965 Gene 25-like lysozyme SH04_RS03320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS03320 PF03466 LysR substrate binding domain SH04_RS03325 PF01979 Amidohydrolase family SH04_RS03330 PF07670 Nucleoside recognition SH04_RS03335 PF07670 Nucleoside recognition SH04_RS03340 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family SH04_RS03345 PF06779 Uncharacterised MFS-type transporter YbfB SH04_RS03350 PF06977 SdiA-regulated SH04_RS03355 PF11823 Protein of unknown function (DUF3343) SH04_RS03360 PF01869 BadF/BadG/BcrA/BcrD ATPase family SH04_RS03365 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SH04_RS03370 PF04286 Protein of unknown function (DUF445) SH04_RS03375 PF07690 Major Facilitator Superfamily SH04_RS03385 PF00155 Aminotransferase class I and II SH04_RS03385 PF00392 Bacterial regulatory proteins, gntR family SH04_RS03390 PF06568 Domain of unknown function (DUF1127) SH04_RS03405 PF10117 McrBC 5-methylcytosine restriction system component SH04_RS03410 PF07728 AAA domain (dynein-related subfamily) SH04_RS03410 PF12102 Domain of unknown function (DUF3578) SH04_RS03415 PF08845 Toxin SymE, type I toxin-antitoxin system SH04_RS03420 PF01420 Type I restriction modification DNA specificity domain SH04_RS03425 PF02384 N-6 DNA Methylase SH04_RS03430 PF04851 Type III restriction enzyme, res subunit SH04_RS03430 PF00271 Helicase conserved C-terminal domain SH04_RS03430 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SH04_RS03430 PF08463 EcoEI R protein C-terminal SH04_RS03435 PF07690 Major Facilitator Superfamily SH04_RS03440 PF02909 Tetracyclin repressor-like, C-terminal domain SH04_RS03440 PF00440 Bacterial regulatory proteins, tetR family SH04_RS03445 PF04471 Restriction endonuclease SH04_RS03445 PF14338 Mrr N-terminal domain SH04_RS03450 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH04_RS03450 PF07683 Cobalamin synthesis protein cobW C-terminal domain SH04_RS03455 PF04328 Selenoprotein, putative SH04_RS03460 PF02554 Carbon starvation protein CstA SH04_RS03460 PF13722 5TM C-terminal transporter carbon starvation CstA SH04_RS03470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH04_RS03470 PF02203 Tar ligand binding domain homologue SH04_RS03470 PF00672 HAMP domain SH04_RS03475 PF07690 Major Facilitator Superfamily SH04_RS03480 PF07729 FCD domain SH04_RS03480 PF00392 Bacterial regulatory proteins, gntR family SH04_RS03485 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS03485 PF00107 Zinc-binding dehydrogenase SH04_RS03490 PF00884 Sulfatase SH04_RS03495 PF10696 Protein of unknown function (DUF2501) SH04_RS03500 PF01695 IstB-like ATP binding protein SH04_RS03505 PF17948 DnaT DNA-binding domain SH04_RS03510 PF12821 Threonine/Serine exporter, ThrE SH04_RS03515 PF06738 Putative threonine/serine exporter SH04_RS03520 PF00196 Bacterial regulatory proteins, luxR family SH04_RS03525 PF00196 Bacterial regulatory proteins, luxR family SH04_RS03530 PF06276 Ferric iron reductase FhuF-like transporter SH04_RS03530 PF11575 FhuF 2Fe-2S C-terminal domain SH04_RS03535 PF07256 Protein of unknown function (DUF1435) SH04_RS03555 PF05175 Methyltransferase small domain SH04_RS03555 PF08468 Methyltransferase small domain N-terminal SH04_RS03560 PF03603 DNA polymerase III psi subunit SH04_RS03565 PF00583 Acetyltransferase (GNAT) family SH04_RS03570 PF13419 Haloacid dehalogenase-like hydrolase SH04_RS03575 PF03144 Elongation factor Tu domain 2 SH04_RS03575 PF00009 Elongation factor Tu GTP binding domain SH04_RS03575 PF16658 Class II release factor RF3, C-terminal domain SH04_RS03580 PF04972 BON domain SH04_RS03585 PF07043 Protein of unknown function (DUF1328) SH04_RS03590 PF01734 Patatin-like phospholipase SH04_RS03595 PF01026 TatD related DNase SH04_RS03600 PF04055 Radical SAM superfamily SH04_RS03605 PF11230 Protein of unknown function (DUF3029) SH04_RS03615 PF01791 DeoC/LacD family aldolase SH04_RS03620 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SH04_RS03620 PF02885 Glycosyl transferase family, helical bundle domain SH04_RS03620 PF00591 Glycosyl transferase family, a/b domain SH04_RS03625 PF01676 Metalloenzyme superfamily SH04_RS03630 PF01048 Phosphorylase superfamily SH04_RS03635 PF07804 HipA-like C-terminal domain SH04_RS03640 PF03099 Biotin/lipoate A/B protein ligase family SH04_RS03640 PF10437 Bacterial lipoate protein ligase C-terminus SH04_RS03645 PF10144 Bacterial virulence factor haemolysin SH04_RS03650 PF18429 Domain of unknown function (DUF5609) SH04_RS03655 PF18073 Rubredoxin metal binding domain SH04_RS03660 PF13521 AAA domain SH04_RS03660 PF01381 Helix-turn-helix SH04_RS03670 PF00005 ABC transporter SH04_RS03670 PF12848 ABC transporter SH04_RS03675 PF01464 Transglycosylase SLT domain SH04_RS03675 PF14718 Soluble lytic murein transglycosylase L domain SH04_RS03680 PF01371 Trp repressor protein SH04_RS03685 PF01931 Protein of unknown function DUF84 SH04_RS03690 PF00300 Histidine phosphatase superfamily (branch 1) SH04_RS03695 PF12833 Helix-turn-helix domain SH04_RS03695 PF06445 GyrI-like small molecule binding domain SH04_RS03700 PF05981 CreA protein SH04_RS03705 PF00072 Response regulator receiver domain SH04_RS03705 PF00486 Transcriptional regulatory protein, C terminal SH04_RS03710 PF00672 HAMP domain SH04_RS03710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS03710 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS03715 PF06123 Inner membrane protein CreD SH04_RS03720 PF00486 Transcriptional regulatory protein, C terminal SH04_RS03720 PF00072 Response regulator receiver domain SH04_RS03730 PF00588 SpoU rRNA Methylase family SH04_RS03735 PF08254 Threonine leader peptide SH04_RS03740 PF03447 Homoserine dehydrogenase, NAD binding domain SH04_RS03740 PF00742 Homoserine dehydrogenase SH04_RS03740 PF13840 ACT domain SH04_RS03740 PF01842 ACT domain SH04_RS03740 PF00696 Amino acid kinase family SH04_RS03745 PF08544 GHMP kinases C terminal SH04_RS03745 PF00288 GHMP kinases N terminal domain SH04_RS03750 PF14821 Threonine synthase N terminus SH04_RS03750 PF00291 Pyridoxal-phosphate dependent enzyme SH04_RS03760 PF10697 Protein of unknown function (DUF2502) SH04_RS03765 PF03883 Peroxide stress protein YaaA SH04_RS03770 PF01235 Sodium:alanine symporter family SH04_RS03775 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH04_RS03780 PF00994 Probable molybdopterin binding domain SH04_RS03785 PF01184 GPR1/FUN34/yaaH family SH04_RS03790 PF03981 Ubiquinol-cytochrome C chaperone SH04_RS03790 PF13099 Domain of unknown function (DUF3944) SH04_RS03795 PF10807 Protein of unknown function (DUF2541) SH04_RS03800 PF00012 Hsp70 protein SH04_RS03805 PF01556 DnaJ C terminal domain SH04_RS03805 PF00226 DnaJ domain SH04_RS03805 PF00684 DnaJ central domain SH04_RS03810 PF01609 Transposase DDE domain SH04_RS03815 PF01848 Hok/gef family SH04_RS03820 PF06965 Na+/H+ antiporter 1 SH04_RS03825 PF03466 LysR substrate binding domain SH04_RS03825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS03830 PF03400 IS1 transposase SH04_RS03835 PF01649 Ribosomal protein S20 SH04_RS03840 PF10837 Protein of unknown function (DUF2575) SH04_RS03845 PF01687 Riboflavin kinase SH04_RS03845 PF06574 FAD synthetase SH04_RS03850 PF08264 Anticodon-binding domain of tRNA SH04_RS03850 PF06827 Zinc finger found in FPG and IleRS SH04_RS03850 PF00133 tRNA synthetases class I (I, L, M and V) SH04_RS03855 PF01252 Signal peptidase (SPase) II SH04_RS03860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH04_RS03865 PF02401 LytB protein SH04_RS03870 PF01156 Inosine-uridine preferring nucleoside hydrolase SH04_RS03875 PF05173 Dihydrodipicolinate reductase, C-terminus SH04_RS03875 PF01113 Dihydrodipicolinate reductase, N-terminus SH04_RS03890 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SH04_RS03890 PF00117 Glutamine amidotransferase class-I SH04_RS03895 PF02142 MGS-like domain SH04_RS03895 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH04_RS03895 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SH04_RS03905 PF07180 CaiF/GrlA transcriptional regulator SH04_RS03910 PF00132 Bacterial transferase hexapeptide (six repeats) SH04_RS03915 PF00378 Enoyl-CoA hydratase/isomerase SH04_RS03920 PF00501 AMP-binding enzyme SH04_RS03920 PF13193 AMP-binding enzyme C-terminal domain SH04_RS03925 PF02515 CoA-transferase family III SH04_RS03930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH04_RS03930 PF02770 Acyl-CoA dehydrogenase, middle domain SH04_RS03930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH04_RS03935 PF02028 BCCT, betaine/carnitine/choline family transporter SH04_RS03940 PF01012 Electron transfer flavoprotein domain SH04_RS03945 PF00766 Electron transfer flavoprotein FAD-binding domain SH04_RS03945 PF01012 Electron transfer flavoprotein domain SH04_RS03950 PF01494 FAD binding domain SH04_RS03960 PF00083 Sugar (and other) transporter SH04_RS03965 PF02525 Flavodoxin-like fold SH04_RS03970 PF00999 Sodium/hydrogen exchanger family SH04_RS03970 PF02254 TrkA-N domain SH04_RS03975 PF00186 Dihydrofolate reductase SH04_RS03980 PF00149 Calcineurin-like phosphoesterase SH04_RS03985 PF04379 ApaG domain SH04_RS03990 PF00398 Ribosomal RNA adenine dimethylase SH04_RS03995 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SH04_RS04000 PF00639 PPIC-type PPIASE domain SH04_RS04000 PF09312 SurA N-terminal domain SH04_RS04005 PF04453 LPS transport system D SH04_RS04005 PF03968 OstA-like protein SH04_RS04010 PF00226 DnaJ domain SH04_RS04010 PF05099 Tellurite resistance protein TerB SH04_RS04020 PF00849 RNA pseudouridylate synthase SH04_RS04025 PF12137 RNA polymerase recycling family C-terminal SH04_RS04025 PF18337 RapA N-terminal Tudor like domain SH04_RS04025 PF18339 RapA N-terminal Tudor like domain 1 SH04_RS04025 PF00176 SNF2 family N-terminal domain SH04_RS04025 PF00271 Helicase conserved C-terminal domain SH04_RS04030 PF00136 DNA polymerase family B SH04_RS04030 PF03104 DNA polymerase family B, exonuclease domain SH04_RS04035 PF00596 Class II Aldolase and Adducin N-terminal domain SH04_RS04040 PF02610 L-arabinose isomerase SH04_RS04040 PF11762 L-arabinose isomerase C-terminal domain SH04_RS04045 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH04_RS04050 PF12833 Helix-turn-helix domain SH04_RS04050 PF02311 AraC-like ligand binding domain SH04_RS04055 PF09335 SNARE associated Golgi protein SH04_RS04060 PF00005 ABC transporter SH04_RS04065 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS04075 PF12793 Sugar transport-related sRNA regulator N-term SH04_RS04075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH04_RS04085 PF07690 Major Facilitator Superfamily SH04_RS04090 PF00694 Aconitase C-terminal domain SH04_RS04095 PF00330 Aconitase family (aconitate hydratase) SH04_RS04100 PF00180 Isocitrate/isopropylmalate dehydrogenase SH04_RS04105 PF08502 LeuA allosteric (dimerisation) domain SH04_RS04105 PF00682 HMGL-like SH04_RS04110 PF08054 Leucine operon leader peptide SH04_RS04115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS04115 PF03466 LysR substrate binding domain SH04_RS04120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH04_RS04120 PF00205 Thiamine pyrophosphate enzyme, central domain SH04_RS04120 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH04_RS04125 PF10369 Small subunit of acetolactate synthase SH04_RS04135 PF00356 Bacterial regulatory proteins, lacI family SH04_RS04135 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH04_RS04140 PF02381 MraZ protein, putative antitoxin-like SH04_RS04145 PF01795 MraW methylase family SH04_RS04150 PF04999 Cell division protein FtsL SH04_RS04155 PF00905 Penicillin binding protein transpeptidase domain SH04_RS04155 PF03717 Penicillin-binding Protein dimerisation domain SH04_RS04160 PF02875 Mur ligase family, glutamate ligase domain SH04_RS04160 PF08245 Mur ligase middle domain SH04_RS04160 PF01225 Mur ligase family, catalytic domain SH04_RS04165 PF02875 Mur ligase family, glutamate ligase domain SH04_RS04165 PF08245 Mur ligase middle domain SH04_RS04165 PF01225 Mur ligase family, catalytic domain SH04_RS04170 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SH04_RS04170 PF00953 Glycosyl transferase family 4 SH04_RS04175 PF02875 Mur ligase family, glutamate ligase domain SH04_RS04175 PF08245 Mur ligase middle domain SH04_RS04180 PF01098 Cell cycle protein SH04_RS04185 PF04101 Glycosyltransferase family 28 C-terminal domain SH04_RS04185 PF03033 Glycosyltransferase family 28 N-terminal domain SH04_RS04190 PF08245 Mur ligase middle domain SH04_RS04190 PF02875 Mur ligase family, glutamate ligase domain SH04_RS04190 PF01225 Mur ligase family, catalytic domain SH04_RS04195 PF01820 D-ala D-ala ligase N-terminus SH04_RS04195 PF07478 D-ala D-ala ligase C-terminus SH04_RS04200 PF08478 POTRA domain, FtsQ-type SH04_RS04200 PF03799 Cell division protein FtsQ SH04_RS04205 PF02491 SHS2 domain inserted in FTSA SH04_RS04210 PF12327 FtsZ family, C-terminal domain SH04_RS04210 PF00091 Tubulin/FtsZ family, GTPase domain SH04_RS04215 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SH04_RS04220 PF06558 Secretion monitor precursor protein (SecM) SH04_RS04225 PF02810 SEC-C motif SH04_RS04225 PF07517 SecA DEAD-like domain SH04_RS04225 PF01043 SecA preprotein cross-linking domain SH04_RS04225 PF07516 SecA Wing and Scaffold domain SH04_RS04230 PF00293 NUDIX domain SH04_RS04240 PF03884 DNA gyrase inhibitor YacG SH04_RS04245 PF07072 Cell division protein SH04_RS04250 PF01121 Dephospho-CoA kinase SH04_RS04255 PF00478 IMP dehydrogenase / GMP reductase domain SH04_RS04260 PF00482 Type II secretion system (T2SS), protein F SH04_RS04265 PF00437 Type II/IV secretion system protein SH04_RS04265 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SH04_RS04270 PF07963 Prokaryotic N-terminal methylation motif SH04_RS04280 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SH04_RS04280 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SH04_RS04285 PF01510 N-acetylmuramoyl-L-alanine amidase SH04_RS04290 PF17113 Regulatory signalling modulator protein AmpE SH04_RS04295 PF00324 Amino acid permease SH04_RS04300 PF00392 Bacterial regulatory proteins, gntR family SH04_RS04300 PF07729 FCD domain SH04_RS04305 PF17831 Pyruvate dehydrogenase E1 component middle domain SH04_RS04305 PF00456 Transketolase, thiamine diphosphate binding domain SH04_RS04310 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH04_RS04310 PF00364 Biotin-requiring enzyme SH04_RS04310 PF02817 e3 binding domain SH04_RS04315 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH04_RS04315 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH04_RS04320 PF11737 Protein of unknown function (DUF3300) SH04_RS04325 PF11791 Aconitate B N-terminal domain SH04_RS04325 PF06434 Aconitate hydratase 2 N-terminus SH04_RS04325 PF00330 Aconitase family (aconitate hydratase) SH04_RS04330 PF06062 Uncharacterised protein family (UPF0231) SH04_RS04335 PF02675 S-adenosylmethionine decarboxylase SH04_RS04340 PF17284 Spermidine synthase tetramerisation domain SH04_RS04345 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) SH04_RS04350 PF07731 Multicopper oxidase SH04_RS04350 PF07732 Multicopper oxidase SH04_RS04350 PF00394 Multicopper oxidase SH04_RS04355 PF01011 PQQ enzyme repeat SH04_RS04360 PF00156 Phosphoribosyl transferase domain SH04_RS04365 PF00484 Carbonic anhydrase SH04_RS04370 PF00005 ABC transporter SH04_RS04375 PF01061 ABC-2 type transporter SH04_RS04380 PF03610 PTS system fructose IIA component SH04_RS04385 PF01522 Polysaccharide deacetylase SH04_RS04390 PF02261 Aspartate decarboxylase SH04_RS04395 PF04754 Putative transposase, YhgA-like SH04_RS04400 PF02569 Pantoate-beta-alanine ligase SH04_RS04405 PF02548 Ketopantoate hydroxymethyltransferase SH04_RS04410 PF00419 Fimbrial protein SH04_RS04415 PF00419 Fimbrial protein SH04_RS04420 PF00419 Fimbrial protein SH04_RS04425 PF00419 Fimbrial protein SH04_RS04430 PF13953 PapC C-terminal domain SH04_RS04430 PF13954 PapC N-terminal domain SH04_RS04430 PF00577 Outer membrane usher protein SH04_RS04435 PF02753 Pili assembly chaperone PapD, C-terminal domain SH04_RS04435 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH04_RS04440 PF00419 Fimbrial protein SH04_RS04445 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SH04_RS04450 PF12626 Polymerase A arginine-rich C-terminus SH04_RS04450 PF12627 Probable RNA and SrmB- binding site of polymerase A SH04_RS04450 PF01743 Poly A polymerase head domain SH04_RS04455 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH04_RS04460 PF01258 Prokaryotic dksA/traR C4-type zinc finger SH04_RS04465 PF03749 Sugar fermentation stimulation protein RE domain SH04_RS04465 PF17746 SfsA N-terminal OB domain SH04_RS04470 PF02834 LigT like Phosphoesterase SH04_RS04475 PF00271 Helicase conserved C-terminal domain SH04_RS04475 PF08482 ATP-dependent helicase C-terminal SH04_RS04475 PF00270 DEAD/DEAH box helicase SH04_RS04475 PF04408 Helicase associated domain (HA2) SH04_RS04485 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal SH04_RS04485 PF00912 Transglycosylase SH04_RS04485 PF00905 Penicillin binding protein transpeptidase domain SH04_RS04485 PF14814 Bifunctional transglycosylase second domain SH04_RS04490 PF00593 TonB dependent receptor SH04_RS04490 PF07715 TonB-dependent Receptor Plug Domain SH04_RS04495 PF00005 ABC transporter SH04_RS04500 PF01497 Periplasmic binding protein SH04_RS04505 PF01032 FecCD transport family SH04_RS04510 PF00202 Aminotransferase class-III SH04_RS04515 PF00654 Voltage gated chloride channel SH04_RS04520 PF01521 Iron-sulphur cluster biosynthesis SH04_RS04525 PF03458 UPF0126 domain SH04_RS04530 PF01497 Periplasmic binding protein SH04_RS04535 PF01048 Phosphorylase superfamily SH04_RS04540 PF13286 Phosphohydrolase-associated domain SH04_RS04540 PF01966 HD domain SH04_RS04545 PF00595 PDZ domain SH04_RS04550 PF05651 Putative sugar diacid recognition SH04_RS04550 PF17853 GGDEF-like domain SH04_RS04550 PF13556 PucR C-terminal helix-turn-helix domain SH04_RS04555 PF11944 Protein of unknown function (DUF3461) SH04_RS04560 PF00149 Calcineurin-like phosphoesterase SH04_RS04565 PF14602 Hexapeptide repeat of succinyl-transferase SH04_RS04565 PF00132 Bacterial transferase hexapeptide (six repeats) SH04_RS04565 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal SH04_RS04570 PF01842 ACT domain SH04_RS04570 PF08335 GlnD PII-uridylyltransferase SH04_RS04570 PF01966 HD domain SH04_RS04570 PF01909 Nucleotidyltransferase domain SH04_RS04575 PF00557 Metallopeptidase family M24 SH04_RS04580 PF00318 Ribosomal protein S2 SH04_RS04585 PF00889 Elongation factor TS SH04_RS04590 PF00696 Amino acid kinase family SH04_RS04595 PF01765 Ribosome recycling factor SH04_RS04600 PF13288 DXP reductoisomerase C-terminal domain SH04_RS04600 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SH04_RS04600 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SH04_RS04605 PF01255 Putative undecaprenyl diphosphate synthase SH04_RS04615 PF02163 Peptidase family M50 SH04_RS04615 PF17820 PDZ domain SH04_RS04620 PF01103 Surface antigen SH04_RS04620 PF07244 Surface antigen variable number repeat SH04_RS04625 PF03938 Outer membrane protein (OmpH-like) SH04_RS04630 PF00132 Bacterial transferase hexapeptide (six repeats) SH04_RS04630 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SH04_RS04635 PF07977 FabA-like domain SH04_RS04640 PF00132 Bacterial transferase hexapeptide (six repeats) SH04_RS04640 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SH04_RS04645 PF02684 Lipid-A-disaccharide synthetase SH04_RS04650 PF01351 Ribonuclease HII SH04_RS04655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SH04_RS04655 PF01336 OB-fold nucleic acid binding domain SH04_RS04655 PF02811 PHP domain SH04_RS04655 PF14579 Helix-hairpin-helix motif SH04_RS04655 PF07733 Bacterial DNA polymerase III alpha NTPase domain SH04_RS04660 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SH04_RS04665 PF01276 Orn/Lys/Arg decarboxylase, major domain SH04_RS04665 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH04_RS04665 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH04_RS04670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH04_RS04675 PF11734 TilS substrate C-terminal domain SH04_RS04675 PF09179 TilS substrate binding domain SH04_RS04675 PF01171 PP-loop family SH04_RS04680 PF07073 Modulator of Rho-dependent transcription termination (ROF) SH04_RS04685 PF06786 Uncharacterised protein family (UPF0253) SH04_RS04690 PF07152 YaeQ protein SH04_RS04695 PF00472 RF-1 domain SH04_RS04700 PF04170 NlpE N-terminal domain SH04_RS04700 PF17185 NlpE C-terminal OB domain SH04_RS04705 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH04_RS04710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH04_RS04710 PF03129 Anticodon binding domain SH04_RS04710 PF04073 Aminoacyl-tRNA editing domain SH04_RS04715 PF01980 tRNA-methyltransferase O SH04_RS04715 PF18389 TrmO C-terminal domain SH04_RS04720 PF16358 RcsF lipoprotein SH04_RS04725 PF03180 NLPA lipoprotein SH04_RS04730 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS04735 PF00005 ABC transporter SH04_RS04735 PF09383 NIL domain SH04_RS04775 PF00248 Aldo/keto reductase family SH04_RS04780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS04780 PF03466 LysR substrate binding domain SH04_RS04785 PF03372 Endonuclease/Exonuclease/phosphatase family SH04_RS04790 PF08241 Methyltransferase domain SH04_RS04795 PF01476 LysM domain SH04_RS04795 PF01464 Transglycosylase SLT domain SH04_RS04800 PF16123 Hydroxyacylglutathione hydrolase C-terminus SH04_RS04800 PF00753 Metallo-beta-lactamase superfamily SH04_RS04805 PF08241 Methyltransferase domain SH04_RS04810 PF00075 RNase H SH04_RS04815 PF00929 Exonuclease SH04_RS04840 PF13808 DDE_Tnp_1-associated SH04_RS04840 PF01609 Transposase DDE domain SH04_RS04845 PF00795 Carbon-nitrogen hydrolase SH04_RS04855 PF09317 Domain of unknown function (DUF1974) SH04_RS04855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH04_RS04855 PF02770 Acyl-CoA dehydrogenase, middle domain SH04_RS04855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH04_RS04860 PF13580 SIS domain SH04_RS04865 PF13230 Glutamine amidotransferases class-II SH04_RS04870 PF03734 L,D-transpeptidase catalytic domain SH04_RS04875 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ SH04_RS04880 PF04221 RelB antitoxin SH04_RS04885 PF00877 NlpC/P60 family SH04_RS04895 PF00771 FHIPEP family SH04_RS04900 PF13677 Membrane MotB of proton-channel complex MotA/MotB SH04_RS04900 PF00691 OmpA family SH04_RS04905 PF00817 impB/mucB/samB family SH04_RS04905 PF11799 impB/mucB/samB family C-terminal domain SH04_RS04905 PF11798 IMS family HHH motif SH04_RS04915 PF13957 Toxin YafO, type II toxin-antitoxin system SH04_RS04920 PF13673 Acetyltransferase (GNAT) domain SH04_RS04930 PF00472 RF-1 domain SH04_RS04935 PF01546 Peptidase family M20/M25/M40 SH04_RS04935 PF07687 Peptidase dimerisation domain SH04_RS04940 PF00156 Phosphoribosyl transferase domain SH04_RS04945 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) SH04_RS04950 PF07417 Sigma factor-binding transcriptional regulator Crl SH04_RS04955 PF00267 Gram-negative porin SH04_RS04960 PF00696 Amino acid kinase family SH04_RS04960 PF01472 PUA domain SH04_RS04965 PF00171 Aldehyde dehydrogenase family SH04_RS04975 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH04_RS04980 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH04_RS04985 PF04002 RadC-like JAB domain SH04_RS04990 PF03230 Antirestriction protein SH04_RS04995 PF06006 Bacterial protein of unknown function (DUF905) SH04_RS05015 PF06067 Domain of unknown function (DUF932) SH04_RS05020 PF01926 50S ribosome-binding GTPase SH04_RS05025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS05025 PF03466 LysR substrate binding domain SH04_RS05030 PF01527 Transposase SH04_RS05035 PF00665 Integrase core domain SH04_RS05035 PF13936 Helix-turn-helix domain SH04_RS05055 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SH04_RS05060 PF05598 Transposase domain (DUF772) SH04_RS05060 PF01609 Transposase DDE domain SH04_RS05065 PF00324 Amino acid permease SH04_RS05070 PF02574 Homocysteine S-methyltransferase SH04_RS05075 PF08402 TOBE domain SH04_RS05075 PF00005 ABC transporter SH04_RS05080 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS05085 PF03400 IS1 transposase SH04_RS05090 PF12759 InsA C-terminal domain SH04_RS05090 PF03811 InsA N-terminal domain SH04_RS05095 PF01527 Transposase SH04_RS05100 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH04_RS05105 PF00665 Integrase core domain SH04_RS05110 PF00701 Dihydrodipicolinate synthetase family SH04_RS05115 PF00920 Dehydratase family SH04_RS05125 PF04616 Glycosyl hydrolases family 43 SH04_RS05125 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain SH04_RS05130 PF09339 IclR helix-turn-helix domain SH04_RS05130 PF01614 Bacterial transcriptional regulator SH04_RS05135 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH04_RS05135 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH04_RS05140 PF03400 IS1 transposase SH04_RS05155 PF07638 ECF sigma factor SH04_RS05175 PF00589 Phage integrase family SH04_RS05175 PF13356 Arm DNA-binding domain SH04_RS05185 PF03466 LysR substrate binding domain SH04_RS05190 PF02625 XdhC and CoxI family SH04_RS05190 PF13478 XdhC Rossmann domain SH04_RS05195 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH04_RS05195 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH04_RS05200 PF03450 CO dehydrogenase flavoprotein C-terminal domain SH04_RS05200 PF00941 FAD binding domain in molybdopterin dehydrogenase SH04_RS05205 PF01799 [2Fe-2S] binding domain SH04_RS05205 PF00111 2Fe-2S iron-sulfur cluster binding domain SH04_RS05210 PF07274 Protein of unknown function (DUF1440) SH04_RS05215 PF03692 Putative zinc- or iron-chelating domain SH04_RS05230 PF15976 CS1-pili formation C-terminal SH04_RS05230 PF16967 E-set like domain SH04_RS05235 PF18649 EcpB C-terminal domain SH04_RS05240 PF16449 Fimbrillin MatB SH04_RS05245 PF00196 Bacterial regulatory proteins, luxR family SH04_RS05255 PF00444 Ribosomal protein L36 SH04_RS05260 PF01197 Ribosomal protein L31 SH04_RS05270 PF11924 Inverse autotransporter, beta-domain SH04_RS05275 PF01527 Transposase SH04_RS05280 PF00665 Integrase core domain SH04_RS05280 PF13276 HTH-like domain SH04_RS05280 PF13333 Integrase core domain SH04_RS05285 PF12833 Helix-turn-helix domain SH04_RS05290 PF04224 Protein of unknown function, DUF417 SH04_RS05295 PF07338 Protein of unknown function (DUF1471) SH04_RS05300 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH04_RS05300 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH04_RS05305 PF12833 Helix-turn-helix domain SH04_RS05305 PF12852 Cupin SH04_RS05310 PF02754 Cysteine-rich domain SH04_RS05315 PF11870 Domain of unknown function (DUF3390) SH04_RS05315 PF13183 4Fe-4S dicluster domain SH04_RS05315 PF02589 LUD domain SH04_RS05320 PF02589 LUD domain SH04_RS05335 PF05199 GMC oxidoreductase SH04_RS05335 PF00732 GMC oxidoreductase SH04_RS05340 PF00171 Aldehyde dehydrogenase family SH04_RS05345 PF13977 BetI-type transcriptional repressor, C-terminal SH04_RS05345 PF00440 Bacterial regulatory proteins, tetR family SH04_RS05350 PF02028 BCCT, betaine/carnitine/choline family transporter SH04_RS05360 PF00196 Bacterial regulatory proteins, luxR family SH04_RS05360 PF00563 EAL domain SH04_RS05365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS05365 PF03466 LysR substrate binding domain SH04_RS05370 PF06496 Protein of unknown function (DUF1097) SH04_RS05375 PF12796 Ankyrin repeats (3 copies) SH04_RS05380 PF11392 Protein of unknown function (DUF2877) SH04_RS05385 PF02629 CoA binding domain SH04_RS05385 PF00549 CoA-ligase SH04_RS05390 PF06545 Protein of unknown function (DUF1116) SH04_RS05400 PF00696 Amino acid kinase family SH04_RS05405 PF07969 Amidohydrolase family SH04_RS05410 PF00107 Zinc-binding dehydrogenase SH04_RS05410 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS05425 PF01810 LysE type translocator SH04_RS05430 PF07338 Protein of unknown function (DUF1471) SH04_RS05435 PF00158 Sigma-54 interaction domain SH04_RS05435 PF02954 Bacterial regulatory protein, Fis family SH04_RS05435 PF06506 Propionate catabolism activator SH04_RS05445 PF00285 Citrate synthase, C-terminal domain SH04_RS05455 PF16177 Acetyl-coenzyme A synthetase N-terminus SH04_RS05455 PF13193 AMP-binding enzyme C-terminal domain SH04_RS05455 PF00501 AMP-binding enzyme SH04_RS05460 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin SH04_RS05465 PF07969 Amidohydrolase family SH04_RS05470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS05470 PF03466 LysR substrate binding domain SH04_RS05475 PF00484 Carbonic anhydrase SH04_RS05480 PF02560 Cyanate lyase C-terminal domain SH04_RS05485 PF07690 Major Facilitator Superfamily SH04_RS05490 PF00132 Bacterial transferase hexapeptide (six repeats) SH04_RS05490 PF12464 Maltose acetyltransferase SH04_RS05495 PF01306 LacY proton/sugar symporter SH04_RS05500 PF00703 Glycosyl hydrolases family 2 SH04_RS05500 PF16353 Domain of unknown function(DUF4981) SH04_RS05500 PF02929 Beta galactosidase small chain SH04_RS05500 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH04_RS05500 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH04_RS05505 PF00356 Bacterial regulatory proteins, lacI family SH04_RS05510 PF09339 IclR helix-turn-helix domain SH04_RS05510 PF01614 Bacterial transcriptional regulator SH04_RS05515 PF01494 FAD binding domain SH04_RS05520 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SH04_RS05525 PF12697 Alpha/beta hydrolase family SH04_RS05530 PF01557 Fumarylacetoacetate (FAA) hydrolase family SH04_RS05535 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation SH04_RS05535 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH04_RS05540 PF00682 HMGL-like SH04_RS05540 PF07836 DmpG-like communication domain SH04_RS05545 PF07690 Major Facilitator Superfamily SH04_RS05550 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) SH04_RS05555 PF00756 Putative esterase SH04_RS05560 PF00107 Zinc-binding dehydrogenase SH04_RS05560 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS05565 PF02583 Metal-sensitive transcriptional repressor SH04_RS05575 PF00132 Bacterial transferase hexapeptide (six repeats) SH04_RS05580 PF01527 Transposase SH04_RS05585 PF13276 HTH-like domain SH04_RS05585 PF00665 Integrase core domain SH04_RS05590 PF00535 Glycosyl transferase family 2 SH04_RS05595 PF02585 GlcNAc-PI de-N-acetylase SH04_RS05600 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH04_RS05605 PF00005 ABC transporter SH04_RS05610 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS05615 PF02668 Taurine catabolism dioxygenase TauD, TfdA family SH04_RS05620 PF00490 Delta-aminolevulinic acid dehydratase SH04_RS05635 PF13333 Integrase core domain SH04_RS05635 PF13276 HTH-like domain SH04_RS05635 PF00665 Integrase core domain SH04_RS05640 PF01527 Transposase SH04_RS05645 PF03797 Autotransporter beta-domain SH04_RS05645 PF03212 Pertactin SH04_RS05650 PF15977 Winged helix-turn-helix DNA binding SH04_RS05655 PF00144 Beta-lactamase SH04_RS05665 PF05992 SbmA/BacA-like family SH04_RS05670 PF07759 Protein of unknown function (DUF1615) SH04_RS05675 PF10954 Protein of unknown function (DUF2755) SH04_RS05680 PF10953 Protein of unknown function (DUF2754) SH04_RS05685 PF01820 D-ala D-ala ligase N-terminus SH04_RS05685 PF07478 D-ala D-ala ligase C-terminus SH04_RS05695 PF10796 Sigma-S stabilisation anti-adaptor protein SH04_RS05700 PF00245 Alkaline phosphatase SH04_RS05705 PF07769 psiF repeat SH04_RS05710 PF05230 MASE2 domain SH04_RS05710 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS05715 PF03807 NADP oxidoreductase coenzyme F420-dependent SH04_RS05715 PF14748 Pyrroline-5-carboxylate reductase dimerisation SH04_RS05720 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SH04_RS05725 PF01202 Shikimate kinase SH04_RS05730 PF16362 YaiA protein SH04_RS05740 PF07302 AroM protein SH04_RS05745 PF06865 Pyrimidine/purine nucleoside phosphorylase SH04_RS05750 PF10971 Protein of unknown function (DUF2773) SH04_RS05755 PF04381 Putative exonuclease, RdgC SH04_RS05760 PF00480 ROK family SH04_RS05765 PF07690 Major Facilitator Superfamily SH04_RS05770 PF13476 AAA domain SH04_RS05775 PF00149 Calcineurin-like phosphoesterase SH04_RS05775 PF12320 Type 5 capsule protein repressor C-terminal domain SH04_RS05780 PF00486 Transcriptional regulatory protein, C terminal SH04_RS05780 PF00072 Response regulator receiver domain SH04_RS05785 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS05785 PF00989 PAS fold SH04_RS05785 PF11808 Phosphate regulon sensor protein PhoR SH04_RS05785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS05790 PF05525 Branched-chain amino acid transport protein SH04_RS05795 PF00324 Amino acid permease SH04_RS05800 PF00128 Alpha amylase, catalytic domain SH04_RS05800 PF02903 Alpha amylase, N-terminal ig-like domain SH04_RS05805 PF04336 Acyl carrier protein phosphodiesterase SH04_RS05810 PF02547 Queuosine biosynthesis protein SH04_RS05815 PF01702 Queuine tRNA-ribosyltransferase SH04_RS05820 PF02699 Preprotein translocase subunit SH04_RS05825 PF07549 SecD/SecF GG Motif SH04_RS05825 PF02355 Protein export membrane protein SH04_RS05825 PF13721 SecD export protein N-terminal TM region SH04_RS05830 PF02355 Protein export membrane protein SH04_RS05830 PF07549 SecD/SecF GG Motif SH04_RS05835 PF01844 HNH endonuclease SH04_RS05845 PF03502 Nucleoside-specific channel-forming protein, Tsx SH04_RS05850 PF11622 Protein of unknown function (DUF3251) SH04_RS05855 PF03477 ATP cone domain SH04_RS05860 PF01872 RibD C-terminal domain SH04_RS05860 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SH04_RS05865 PF00885 6,7-dimethyl-8-ribityllumazine synthase SH04_RS05870 PF01029 NusB family SH04_RS05875 PF00586 AIR synthase related protein, N-terminal domain SH04_RS05875 PF02769 AIR synthase related protein, C-terminal domain SH04_RS05880 PF04608 Phosphatidylglycerophosphatase A SH04_RS05885 PF00248 Aldo/keto reductase family SH04_RS05890 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SH04_RS05890 PF02779 Transketolase, pyrimidine binding domain SH04_RS05890 PF02780 Transketolase, C-terminal domain SH04_RS05895 PF00348 Polyprenyl synthetase SH04_RS05900 PF02609 Exonuclease VII small subunit SH04_RS05905 PF02926 THUMP domain SH04_RS05905 PF02568 Thiamine biosynthesis protein (ThiI) SH04_RS05910 PF01965 DJ-1/PfpI family SH04_RS05915 PF02558 Ketopantoate reductase PanE/ApbA SH04_RS05915 PF08546 Ketopantoate reductase PanE/ApbA C terminal SH04_RS05920 PF04461 Protein of unknown function (DUF520) SH04_RS05925 PF07690 Major Facilitator Superfamily SH04_RS05930 PF01040 UbiA prenyltransferase family SH04_RS05935 PF03626 Prokaryotic Cytochrome C oxidase subunit IV SH04_RS05940 PF00510 Cytochrome c oxidase subunit III SH04_RS05945 PF00115 Cytochrome C and Quinol oxidase polypeptide I SH04_RS05950 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SH04_RS05950 PF06481 COX Aromatic Rich Motif SH04_RS05955 PF07690 Major Facilitator Superfamily SH04_RS05960 PF03923 Uncharacterized lipoprotein SH04_RS05960 PF08139 Prokaryotic membrane lipoprotein lipid attachment site SH04_RS05965 PF01722 BolA-like protein SH04_RS05975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH04_RS05975 PF05698 Bacterial trigger factor protein (TF) C-terminus SH04_RS05975 PF05697 Bacterial trigger factor protein (TF) SH04_RS05980 PF00574 Clp protease SH04_RS05985 PF10431 C-terminal, D2-small domain, of ClpB protein SH04_RS05985 PF07724 AAA domain (Cdc48 subfamily) SH04_RS05985 PF06689 ClpX C4-type zinc finger SH04_RS05990 PF05362 Lon protease (S16) C-terminal proteolytic domain SH04_RS05990 PF00004 ATPase family associated with various cellular activities (AAA) SH04_RS05990 PF02190 ATP-dependent protease La (LON) substrate-binding domain SH04_RS05995 PF00216 Bacterial DNA-binding protein SH04_RS06000 PF13145 PPIC-type PPIASE domain SH04_RS06015 PF06508 Queuosine biosynthesis protein QueC SH04_RS06020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH04_RS06020 PF12793 Sugar transport-related sRNA regulator N-term SH04_RS06030 PF13404 AsnC-type helix-turn-helix domain SH04_RS06030 PF01037 Lrp/AsnC ligand binding domain SH04_RS06035 PF00005 ABC transporter SH04_RS06035 PF00664 ABC transporter transmembrane region SH04_RS06040 PF00664 ABC transporter transmembrane region SH04_RS06040 PF00005 ABC transporter SH04_RS06045 PF00543 Nitrogen regulatory protein P-II SH04_RS06050 PF00909 Ammonium Transporter Family SH04_RS06060 PF09619 Type III secretion system lipoprotein chaperone (YscW) SH04_RS06065 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH04_RS06070 PF07237 Protein of unknown function (DUF1428) SH04_RS06075 PF00563 EAL domain SH04_RS06075 PF12792 CSS motif domain associated with EAL SH04_RS06080 PF10777 Inner membrane protein YlaC SH04_RS06085 PF14602 Hexapeptide repeat of succinyl-transferase SH04_RS06085 PF12464 Maltose acetyltransferase SH04_RS06090 PF05321 Haemolysin expression modulating protein SH04_RS06095 PF10757 Biofilm formation regulator YbaJ SH04_RS06100 PF00873 AcrB/AcrD/AcrF family SH04_RS06105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH04_RS06105 PF00529 HlyD membrane-fusion protein of T1SS SH04_RS06110 PF00440 Bacterial regulatory proteins, tetR family SH04_RS06110 PF08361 MAATS-type transcriptional repressor, C-terminal region SH04_RS06115 PF12794 Mechanosensitive ion channel inner membrane domain 1 SH04_RS06115 PF00924 Mechanosensitive ion channel SH04_RS06115 PF12795 Mechanosensitive ion channel porin domain SH04_RS06125 PF10689 Protein of unknown function (DUF2496) SH04_RS06130 PF07445 Primosomal replication protein priC SH04_RS06135 PF04304 Protein of unknown function (DUF454) SH04_RS06140 PF00156 Phosphoribosyl transferase domain SH04_RS06145 PF12170 DNA polymerase III tau subunit V interacting with alpha SH04_RS06145 PF12169 DNA polymerase III subunits gamma and tau domain III SH04_RS06145 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding SH04_RS06150 PF02575 YbaB/EbfC DNA-binding family SH04_RS06155 PF13662 Toprim domain SH04_RS06155 PF02132 RecR protein SH04_RS06160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS06160 PF00183 Hsp90 protein SH04_RS06165 PF05191 Adenylate kinase, active site lid SH04_RS06170 PF00762 Ferrochelatase SH04_RS06175 PF07859 alpha/beta hydrolase fold SH04_RS06180 PF00294 pfkB family carbohydrate kinase SH04_RS06185 PF00999 Sodium/hydrogen exchanger family SH04_RS06185 PF02254 TrkA-N domain SH04_RS06190 PF07690 Major Facilitator Superfamily SH04_RS06195 PF00149 Calcineurin-like phosphoesterase SH04_RS06195 PF02872 5'-nucleotidase, C-terminal domain SH04_RS06200 PF04073 Aminoacyl-tRNA editing domain SH04_RS06205 PF01963 TraB family SH04_RS06210 PF01381 Helix-turn-helix SH04_RS06215 PF00403 Heavy-metal-associated domain SH04_RS06220 PF04960 Glutaminase SH04_RS06225 PF13520 Amino acid permease SH04_RS06230 PF13411 MerR HTH family regulatory protein SH04_RS06235 PF01957 NfeD-like C-terminal, partner-binding SH04_RS06240 PF01145 SPFH domain / Band 7 family SH04_RS06240 PF16200 C-terminal region of band_7 SH04_RS06245 PF00005 ABC transporter SH04_RS06250 PF03649 Uncharacterised protein family (UPF0014) SH04_RS06255 PF00085 Thioredoxin SH04_RS06260 PF00106 short chain dehydrogenase SH04_RS06265 PF13472 GDSL-like Lipase/Acylhydrolase family SH04_RS06270 PF00005 ABC transporter SH04_RS06280 PF03527 RHS protein SH04_RS06280 PF14220 Domain of unknown function (DUF4329) SH04_RS06280 PF05593 RHS Repeat SH04_RS06285 PF15631 NTF2 fold immunity protein SH04_RS06290 PF03527 RHS protein SH04_RS06310 PF03466 LysR substrate binding domain SH04_RS06310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS06315 PF04115 Ureidoglycolate lyase SH04_RS06320 PF01614 Bacterial transcriptional regulator SH04_RS06320 PF09339 IclR helix-turn-helix domain SH04_RS06325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH04_RS06325 PF00205 Thiamine pyrophosphate enzyme, central domain SH04_RS06325 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH04_RS06330 PF01261 Xylose isomerase-like TIM barrel SH04_RS06335 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH04_RS06335 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH04_RS06340 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin SH04_RS06345 PF01979 Amidohydrolase family SH04_RS06350 PF00860 Permease family SH04_RS06355 PF02595 Glycerate kinase family SH04_RS06360 PF05899 Protein of unknown function (DUF861) SH04_RS06360 PF07883 Cupin domain SH04_RS06365 PF01546 Peptidase family M20/M25/M40 SH04_RS06370 PF02615 Malate/L-lactate dehydrogenase SH04_RS06375 PF00549 CoA-ligase SH04_RS06375 PF02629 CoA binding domain SH04_RS06380 PF06545 Protein of unknown function (DUF1116) SH04_RS06385 PF11392 Protein of unknown function (DUF2877) SH04_RS06390 PF00696 Amino acid kinase family SH04_RS06395 PF02222 ATP-grasp domain SH04_RS06395 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SH04_RS06400 PF00731 AIR carboxylase SH04_RS06405 PF12850 Calcineurin-like phosphoesterase superfamily domain SH04_RS06410 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SH04_RS06415 PF01406 tRNA synthetases class I (C) catalytic domain SH04_RS06415 PF09190 DALR domain SH04_RS06420 PF04307 LexA-binding, inner membrane-associated putative hydrolase SH04_RS06430 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SH04_RS06430 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SH04_RS06435 PF00419 Fimbrial protein SH04_RS06440 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH04_RS06440 PF02753 Pili assembly chaperone PapD, C-terminal domain SH04_RS06445 PF13954 PapC N-terminal domain SH04_RS06445 PF00577 Outer membrane usher protein SH04_RS06445 PF13953 PapC C-terminal domain SH04_RS06450 PF00419 Fimbrial protein SH04_RS06455 PF00419 Fimbrial protein SH04_RS06460 PF00072 Response regulator receiver domain SH04_RS06460 PF00196 Bacterial regulatory proteins, luxR family SH04_RS06470 PF00589 Phage integrase family SH04_RS06480 PF06992 Replication protein P SH04_RS06490 PF01527 Transposase SH04_RS06495 PF13333 Integrase core domain SH04_RS06495 PF00665 Integrase core domain SH04_RS06495 PF13276 HTH-like domain SH04_RS06505 PF00893 Small Multidrug Resistance protein SH04_RS06515 PF13408 Recombinase zinc beta ribbon domain SH04_RS06515 PF00239 Resolvase, N terminal domain SH04_RS06515 PF07508 Recombinase SH04_RS06520 PF01161 Phosphatidylethanolamine-binding protein SH04_RS06525 PF12833 Helix-turn-helix domain SH04_RS06540 PF07102 Protein of unknown function (DUF1364) SH04_RS06545 PF05866 Endodeoxyribonuclease RusA SH04_RS06555 PF06530 Phage antitermination protein Q SH04_RS06565 PF01609 Transposase DDE domain SH04_RS06565 PF05598 Transposase domain (DUF772) SH04_RS06570 PF00267 Gram-negative porin SH04_RS06575 PF04971 Bacteriophage P21 holin S SH04_RS06580 PF00959 Phage lysozyme SH04_RS06585 PF03245 Bacteriophage Rz lysis protein SH04_RS06590 PF06291 Bor protein SH04_RS06600 PF07166 Protein of unknown function (DUF1398) SH04_RS06610 PF13132 Domain of unknown function (DUF3950) SH04_RS06620 PF07471 Phage DNA packaging protein Nu1 SH04_RS06625 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH04_RS06630 PF08242 Methyltransferase domain SH04_RS06640 PF12833 Helix-turn-helix domain SH04_RS06645 PF01278 Omptin family SH04_RS06655 PF12833 Helix-turn-helix domain SH04_RS06660 PF14488 Domain of unknown function (DUF4434) SH04_RS06665 PF13283 Bacteriophage N adsorption protein A C-term SH04_RS06670 PF13632 Glycosyl transferase family group 2 SH04_RS06670 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SH04_RS06675 PF00672 HAMP domain SH04_RS06675 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS06675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS06680 PF00072 Response regulator receiver domain SH04_RS06680 PF00486 Transcriptional regulatory protein, C terminal SH04_RS06685 PF02321 Outer membrane efflux protein SH04_RS06690 PF11604 Copper binding periplasmic protein CusF SH04_RS06695 PF00529 HlyD membrane-fusion protein of T1SS SH04_RS06695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH04_RS06700 PF00873 AcrB/AcrD/AcrF family SH04_RS06705 PF00324 Amino acid permease SH04_RS06710 PF00924 Mechanosensitive ion channel SH04_RS06715 PF00881 Nitroreductase family SH04_RS06720 PF04237 YjbR SH04_RS06725 PF06643 Protein of unknown function (DUF1158) SH04_RS06730 PF04107 Glutamate-cysteine ligase family 2(GCS2) SH04_RS06740 PF01848 Hok/gef family SH04_RS06745 PF01609 Transposase DDE domain SH04_RS06750 PF01648 4'-phosphopantetheinyl transferase superfamily SH04_RS06750 PF17837 4'-phosphopantetheinyl transferase N-terminal domain SH04_RS06755 PF00593 TonB dependent receptor SH04_RS06755 PF07715 TonB-dependent Receptor Plug Domain SH04_RS06760 PF00756 Putative esterase SH04_RS06760 PF11806 Domain of unknown function (DUF3327) SH04_RS06765 PF03621 MbtH-like protein SH04_RS06770 PF00975 Thioesterase domain SH04_RS06770 PF13193 AMP-binding enzyme C-terminal domain SH04_RS06770 PF00501 AMP-binding enzyme SH04_RS06770 PF00550 Phosphopantetheine attachment site SH04_RS06770 PF00668 Condensation domain SH04_RS06775 PF02706 Chain length determinant protein SH04_RS06780 PF00005 ABC transporter SH04_RS06785 PF01032 FecCD transport family SH04_RS06790 PF01032 FecCD transport family SH04_RS06795 PF05977 Transmembrane secretion effector SH04_RS06800 PF01497 Periplasmic binding protein SH04_RS06805 PF00425 chorismate binding enzyme SH04_RS06810 PF13193 AMP-binding enzyme C-terminal domain SH04_RS06810 PF00501 AMP-binding enzyme SH04_RS06815 PF00857 Isochorismatase family SH04_RS06815 PF00550 Phosphopantetheine attachment site SH04_RS06825 PF03061 Thioesterase superfamily SH04_RS06830 PF02554 Carbon starvation protein CstA SH04_RS06830 PF13722 5TM C-terminal transporter carbon starvation CstA SH04_RS06835 PF04328 Selenoprotein, putative SH04_RS06840 PF00465 Iron-containing alcohol dehydrogenase SH04_RS06845 PF00155 Aminotransferase class I and II SH04_RS06850 PF02195 ParB-like nuclease domain SH04_RS06855 PF11922 Domain of unknown function (DUF3440) SH04_RS06855 PF01507 Phosphoadenosine phosphosulfate reductase family SH04_RS06860 PF03466 LysR substrate binding domain SH04_RS06860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS06865 PF13098 Thioredoxin-like domain SH04_RS06870 PF00578 AhpC/TSA family SH04_RS06870 PF10417 C-terminal domain of 1-Cys peroxiredoxin SH04_RS06875 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH04_RS06875 PF13192 Thioredoxin domain SH04_RS06880 PF00582 Universal stress protein family SH04_RS06885 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS06885 PF13823 Alcohol dehydrogenase GroES-associated SH04_RS06885 PF00107 Zinc-binding dehydrogenase SH04_RS06895 PF01272 Transcription elongation factor, GreA/GreB, C-term SH04_RS06895 PF14760 Rnk N-terminus SH04_RS06900 PF00445 Ribonuclease T2 family SH04_RS06905 PF00939 Sodium:sulfate symporter transmembrane region SH04_RS06910 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SH04_RS06915 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase SH04_RS06920 PF04223 Citrate lyase, alpha subunit (CitF) SH04_RS06925 PF03328 HpcH/HpaI aldolase/citrate lyase family SH04_RS06930 PF06857 Malonate decarboxylase delta subunit (MdcD) SH04_RS06935 PF08218 Citrate lyase ligase C-terminal domain SH04_RS06940 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SH04_RS06940 PF17203 Single cache domain 3 SH04_RS06940 PF00989 PAS fold SH04_RS06940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS06945 PF12431 Transcriptional regulator SH04_RS06945 PF00072 Response regulator receiver domain SH04_RS06950 PF03606 C4-dicarboxylate anaerobic carrier SH04_RS06955 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP SH04_RS06960 PF00313 'Cold-shock' DNA-binding domain SH04_RS06965 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SH04_RS06975 PF02416 mttA/Hcf106 family SH04_RS06980 PF04055 Radical SAM superfamily SH04_RS06980 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family SH04_RS06985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS06985 PF03466 LysR substrate binding domain SH04_RS06995 PF03099 Biotin/lipoate A/B protein ligase family SH04_RS07000 PF04359 Protein of unknown function (DUF493) SH04_RS07005 PF00768 D-alanyl-D-alanine carboxypeptidase SH04_RS07005 PF07943 Penicillin-binding protein 5, C-terminal domain SH04_RS07010 PF03330 Lytic transglycolase SH04_RS07010 PF05036 Sporulation related domain SH04_RS07015 PF01098 Cell cycle protein SH04_RS07020 PF03717 Penicillin-binding Protein dimerisation domain SH04_RS07020 PF00905 Penicillin binding protein transpeptidase domain SH04_RS07025 PF02590 Predicted SPOUT methyltransferase SH04_RS07035 PF00300 Histidine phosphatase superfamily (branch 1) SH04_RS07040 PF01467 Cytidylyltransferase-like SH04_RS07045 PF06144 DNA polymerase III, delta subunit SH04_RS07045 PF14840 Processivity clamp loader gamma complex DNA pol III C-term SH04_RS07050 PF04390 Lipopolysaccharide-assembly SH04_RS07055 PF08264 Anticodon-binding domain of tRNA SH04_RS07055 PF00133 tRNA synthetases class I (I, L, M and V) SH04_RS07055 PF13603 Leucyl-tRNA synthetase, Domain 2 SH04_RS07060 PF07295 Zinc-ribbon containing domain SH04_RS07065 PF08238 Sel1 repeat SH04_RS07070 PF06889 Protein of unknown function (DUF1266) SH04_RS07080 PF08238 Sel1 repeat SH04_RS07085 PF06889 Protein of unknown function (DUF1266) SH04_RS07095 PF00012 Hsp70 protein SH04_RS07100 PF01156 Inosine-uridine preferring nucleoside hydrolase SH04_RS07105 PF00005 ABC transporter SH04_RS07110 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS07115 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS07120 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH04_RS07125 PF01609 Transposase DDE domain SH04_RS07125 PF05598 Transposase domain (DUF772) SH04_RS07130 PF00795 Carbon-nitrogen hydrolase SH04_RS07135 PF00571 CBS domain SH04_RS07135 PF03471 Transporter associated domain SH04_RS07140 PF02130 Uncharacterized protein family UPF0054 SH04_RS07145 PF02562 PhoH-like protein SH04_RS07150 PF00919 Uncharacterized protein family UPF0004 SH04_RS07150 PF01938 TRAM domain SH04_RS07150 PF04055 Radical SAM superfamily SH04_RS07155 PF01494 FAD binding domain SH04_RS07195 PF13537 Glutamine amidotransferase domain SH04_RS07195 PF00733 Asparagine synthase SH04_RS07200 PF13344 Haloacid dehalogenase-like hydrolase SH04_RS07205 PF01047 MarR family SH04_RS07205 PF00480 ROK family SH04_RS07210 PF01979 Amidohydrolase family SH04_RS07215 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH04_RS07220 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH04_RS07220 PF00367 phosphotransferase system, EIIB SH04_RS07220 PF02378 Phosphotransferase system, EIIC SH04_RS07225 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SH04_RS07225 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH04_RS07230 PF03573 outer membrane porin, OprD family SH04_RS07235 PF13982 YbfN-like lipoprotein SH04_RS07240 PF01475 Ferric uptake regulator family SH04_RS07255 PF00258 Flavodoxin SH04_RS07260 PF01402 Ribbon-helix-helix protein, copG family SH04_RS07265 PF12697 Alpha/beta hydrolase family SH04_RS07270 PF17206 SeqA protein N-terminal domain SH04_RS07270 PF03925 SeqA protein C-terminal domain SH04_RS07275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH04_RS07275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH04_RS07275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH04_RS07275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH04_RS07295 PF13520 Amino acid permease SH04_RS07300 PF01276 Orn/Lys/Arg decarboxylase, major domain SH04_RS07300 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH04_RS07300 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH04_RS07310 PF00486 Transcriptional regulatory protein, C terminal SH04_RS07310 PF00072 Response regulator receiver domain SH04_RS07315 PF13493 Domain of unknown function (DUF4118) SH04_RS07315 PF13492 GAF domain SH04_RS07315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS07315 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS07315 PF02702 Osmosensitive K+ channel His kinase sensor domain SH04_RS07320 PF02669 K+-transporting ATPase, c chain SH04_RS07330 PF03814 Potassium-transporting ATPase A subunit SH04_RS07335 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) SH04_RS07340 PF10725 Protein of unknown function (DUF2517) SH04_RS07345 PF03527 RHS protein SH04_RS07345 PF05593 RHS Repeat SH04_RS07355 PF05593 RHS Repeat SH04_RS07355 PF03527 RHS protein SH04_RS07365 PF13808 DDE_Tnp_1-associated SH04_RS07370 PF13808 DDE_Tnp_1-associated SH04_RS07370 PF01609 Transposase DDE domain SH04_RS07375 PF01609 Transposase DDE domain SH04_RS07375 PF13808 DDE_Tnp_1-associated SH04_RS07380 PF08349 Protein of unknown function (DUF1722) SH04_RS07385 PF03441 FAD binding domain of DNA photolyase SH04_RS07385 PF00875 DNA photolyase SH04_RS07390 PF00854 POT family SH04_RS07395 PF01784 NIF3 (NGG1p interacting factor 3) SH04_RS07400 PF02682 Carboxyltransferase domain, subdomain C and D SH04_RS07405 PF02626 Carboxyltransferase domain, subdomain A and B SH04_RS07410 PF03746 LamB/YcsF family SH04_RS07415 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SH04_RS07415 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SH04_RS07415 PF06827 Zinc finger found in FPG and IleRS SH04_RS07420 PF05145 Transition state regulatory protein AbrB SH04_RS07425 PF00419 Fimbrial protein SH04_RS07430 PF02753 Pili assembly chaperone PapD, C-terminal domain SH04_RS07430 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH04_RS07435 PF00577 Outer membrane usher protein SH04_RS07435 PF13953 PapC C-terminal domain SH04_RS07435 PF13954 PapC N-terminal domain SH04_RS07440 PF00419 Fimbrial protein SH04_RS07445 PF00285 Citrate synthase, C-terminal domain SH04_RS07455 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SH04_RS07460 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SH04_RS07465 PF00890 FAD binding domain SH04_RS07465 PF02910 Fumarate reductase flavoprotein C-term SH04_RS07470 PF13085 2Fe-2S iron-sulfur cluster binding domain SH04_RS07480 PF16078 2-oxoglutarate dehydrogenase N-terminus SH04_RS07480 PF00676 Dehydrogenase E1 component SH04_RS07480 PF16870 2-oxoglutarate dehydrogenase C-terminal SH04_RS07480 PF02779 Transketolase, pyrimidine binding domain SH04_RS07485 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH04_RS07485 PF00364 Biotin-requiring enzyme SH04_RS07485 PF02817 e3 binding domain SH04_RS07490 PF08442 ATP-grasp domain SH04_RS07490 PF00549 CoA-ligase SH04_RS07495 PF00549 CoA-ligase SH04_RS07495 PF02629 CoA binding domain SH04_RS07500 PF07702 UTRA domain SH04_RS07500 PF00392 Bacterial regulatory proteins, gntR family SH04_RS07505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH04_RS07505 PF02378 Phosphotransferase system, EIIC SH04_RS07505 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH04_RS07510 PF09261 Alpha mannosidase middle domain SH04_RS07510 PF01074 Glycosyl hydrolases family 38 N-terminal domain SH04_RS07510 PF07748 Glycosyl hydrolases family 38 C-terminal domain SH04_RS07520 PF01654 Cytochrome bd terminal oxidase subunit I SH04_RS07525 PF02322 Cytochrome bd terminal oxidase subunit II SH04_RS07530 PF08173 Membrane bound YbgT-like protein SH04_RS07535 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) SH04_RS07540 PF03061 Thioesterase superfamily SH04_RS07545 PF01618 MotA/TolQ/ExbB proton channel family SH04_RS07550 PF02472 Biopolymer transport protein ExbD/TolR SH04_RS07555 PF06519 TolA C-terminal SH04_RS07560 PF07676 WD40-like Beta Propeller Repeat SH04_RS07560 PF04052 TolB amino-terminal domain SH04_RS07565 PF00691 OmpA family SH04_RS07570 PF16331 TolA binding protein trimerisation SH04_RS07570 PF13174 Tetratricopeptide repeat SH04_RS07610 PF02445 Quinolinate synthetase A protein SH04_RS07615 PF04973 Nicotinamide mononucleotide transporter SH04_RS07620 PF01545 Cation efflux family SH04_RS07625 PF13985 YbgS-like protein SH04_RS07635 PF00793 DAHP synthetase I family SH04_RS07640 PF00300 Histidine phosphatase superfamily (branch 1) SH04_RS07645 PF01263 Aldose 1-epimerase SH04_RS07650 PF10509 Galactokinase galactose-binding signature SH04_RS07650 PF08544 GHMP kinases C terminal SH04_RS07650 PF00288 GHMP kinases N terminal domain SH04_RS07655 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SH04_RS07655 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SH04_RS07660 PF16363 GDP-mannose 4,6 dehydratase SH04_RS07665 PF00005 ABC transporter SH04_RS07670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS07670 PF03459 TOBE domain SH04_RS07675 PF10766 Multidrug efflux pump-associated protein AcrZ SH04_RS07685 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS07690 PF00005 ABC transporter SH04_RS07690 PF03459 TOBE domain SH04_RS07700 PF10282 Lactonase, 7-bladed beta-propeller SH04_RS07705 PF03466 LysR substrate binding domain SH04_RS07705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS07710 PF04303 PrpF protein SH04_RS07715 PF00939 Sodium:sulfate symporter transmembrane region SH04_RS07720 PF00694 Aconitase C-terminal domain SH04_RS07720 PF00330 Aconitase family (aconitate hydratase) SH04_RS07725 PF01095 Pectinesterase SH04_RS07730 PF01161 Phosphatidylethanolamine-binding protein SH04_RS07735 PF00202 Aminotransferase class-III SH04_RS07740 PF04055 Radical SAM superfamily SH04_RS07740 PF06968 Biotin and Thiamin Synthesis associated domain SH04_RS07745 PF00155 Aminotransferase class I and II SH04_RS07750 PF08241 Methyltransferase domain SH04_RS07760 PF00271 Helicase conserved C-terminal domain SH04_RS07760 PF04851 Type III restriction enzyme, res subunit SH04_RS07760 PF12344 Ultra-violet resistance protein B SH04_RS07760 PF17757 UvrB interaction domain SH04_RS07760 PF02151 UvrB/uvrC motif SH04_RS07765 PF01933 Uncharacterised protein family UPF0052 SH04_RS07775 PF06463 Molybdenum Cofactor Synthesis C SH04_RS07775 PF04055 Radical SAM superfamily SH04_RS07780 PF00994 Probable molybdopterin binding domain SH04_RS07785 PF01967 MoaC family SH04_RS07790 PF02597 ThiS family SH04_RS07795 PF02391 MoaE protein SH04_RS07800 PF01027 Inhibitor of apoptosis-promoting Bax1 SH04_RS07805 PF01027 Inhibitor of apoptosis-promoting Bax1 SH04_RS07810 PF03706 Lysylphosphatidylglycerol synthase TM region SH04_RS07815 PF13091 PLD-like domain SH04_RS07820 PF03372 Endonuclease/Exonuclease/phosphatase family SH04_RS07825 PF11076 Putative inner membrane protein YbhQ SH04_RS07840 PF00005 ABC transporter SH04_RS07845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH04_RS07850 PF00440 Bacterial regulatory proteins, tetR family SH04_RS07850 PF09209 Tetracyclin repressor-like, C-terminal domain SH04_RS07855 PF00271 Helicase conserved C-terminal domain SH04_RS07855 PF00270 DEAD/DEAH box helicase SH04_RS07860 PF08719 Domain of unknown function (DUF1768) SH04_RS07865 PF06733 DEAD_2 SH04_RS07865 PF13307 Helicase C-terminal domain SH04_RS07865 PF00270 DEAD/DEAH box helicase SH04_RS07870 PF02885 Glycosyl transferase family, helical bundle domain SH04_RS07875 PF02615 Malate/L-lactate dehydrogenase SH04_RS07880 PF07338 Protein of unknown function (DUF1471) SH04_RS07885 PF01258 Prokaryotic dksA/traR C4-type zinc finger SH04_RS07890 PF13640 2OG-Fe(II) oxygenase superfamily SH04_RS07890 PF18331 PKHD-type hydroxylase C-terminal domain SH04_RS07895 PF00593 TonB dependent receptor SH04_RS07895 PF07715 TonB-dependent Receptor Plug Domain SH04_RS07900 PF07338 Protein of unknown function (DUF1471) SH04_RS07905 PF05971 RNA methyltransferase SH04_RS07910 PF00924 Mechanosensitive ion channel SH04_RS07915 PF00005 ABC transporter SH04_RS07920 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS07925 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH04_RS07935 PF00210 Ferritin-like domain SH04_RS07940 PF00892 EamA-like transporter family SH04_RS07945 PF13505 Outer membrane protein beta-barrel domain SH04_RS07950 PF00884 Sulfatase SH04_RS07960 PF02742 Iron dependent repressor, metal binding and dimerisation domain SH04_RS07960 PF01325 Iron dependent repressor, N-terminal DNA binding domain SH04_RS07965 PF03600 Citrate transporter SH04_RS07970 PF03734 L,D-transpeptidase catalytic domain SH04_RS07970 PF17969 L,D-transpeptidase C-terminal domain SH04_RS07975 PF12848 ABC transporter SH04_RS07975 PF00005 ABC transporter SH04_RS07980 PF07350 Protein of unknown function (DUF1479) SH04_RS07990 PF01228 Glycine radical SH04_RS07990 PF02901 Pyruvate formate lyase-like SH04_RS07995 PF04055 Radical SAM superfamily SH04_RS08000 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH04_RS08005 PF00899 ThiF family SH04_RS08010 PF00994 Probable molybdopterin binding domain SH04_RS08010 PF03454 MoeA C-terminal region (domain IV) SH04_RS08010 PF03453 MoeA N-terminal region (domain I and II) SH04_RS08015 PF01112 Asparaginase SH04_RS08020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH04_RS08020 PF00005 ABC transporter SH04_RS08025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH04_RS08030 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS08035 PF12911 N-terminal TM domain of oligopeptide transport permease C SH04_RS08035 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS08040 PF00563 EAL domain SH04_RS08040 PF17153 Periplasmic sensor domain, extracellular SH04_RS08045 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS08045 PF17156 Gammaproteobacterial periplasmic sensor domain SH04_RS08050 PF04055 Radical SAM superfamily SH04_RS08050 PF18693 TRAM domain SH04_RS08050 PF00919 Uncharacterized protein family UPF0004 SH04_RS08055 PF10799 Biofilm formation protein (YliH/bssR) SH04_RS08060 PF07995 Glucose / Sorbosone dehydrogenase SH04_RS08065 PF00043 Glutathione S-transferase, C-terminal domain SH04_RS08065 PF13417 Glutathione S-transferase, N-terminal domain SH04_RS08070 PF00768 D-alanyl-D-alanine carboxypeptidase SH04_RS08070 PF07943 Penicillin-binding protein 5, C-terminal domain SH04_RS08075 PF08220 DeoR-like helix-turn-helix domain SH04_RS08075 PF00455 DeoR C terminal sensor domain SH04_RS08080 PF01569 PAP2 superfamily SH04_RS08085 PF07690 Major Facilitator Superfamily SH04_RS08100 PF07690 Major Facilitator Superfamily SH04_RS08105 PF00440 Bacterial regulatory proteins, tetR family SH04_RS08110 PF02080 TrkA-C domain SH04_RS08110 PF06826 Predicted Permease Membrane Region SH04_RS08115 PF11045 Putative inner membrane protein of Enterobacteriaceae SH04_RS08120 PF00462 Glutaredoxin SH04_RS08125 PF07214 Protein of unknown function (DUF1418) SH04_RS08130 PF00881 Nitroreductase family SH04_RS08135 PF18030 RimK PreATP-grasp domain SH04_RS08135 PF08443 RimK-like ATP-grasp domain SH04_RS08140 PF10722 Putative bacterial sensory transduction regulator SH04_RS08150 PF13416 Bacterial extracellular solute-binding protein SH04_RS08155 PF08402 TOBE domain SH04_RS08155 PF00005 ABC transporter SH04_RS08160 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS08165 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS08170 PF10767 Protein of unknown function (DUF2593) SH04_RS08175 PF05958 tRNA (Uracil-5-)-methyltransferase SH04_RS08180 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH04_RS08185 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS08190 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS08195 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH04_RS08200 PF00005 ABC transporter SH04_RS08205 PF12883 Protein of unknown function (DUF3828) SH04_RS08210 PF01906 Putative heavy-metal-binding SH04_RS08215 PF01510 N-acetylmuramoyl-L-alanine amidase SH04_RS08220 PF01370 NAD dependent epimerase/dehydratase family SH04_RS08225 PF11066 Protein of unknown function (DUF2867) SH04_RS08225 PF13460 NAD(P)H-binding SH04_RS08230 PF01212 Beta-eliminating lyase SH04_RS08235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH04_RS08235 PF00205 Thiamine pyrophosphate enzyme, central domain SH04_RS08235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH04_RS08240 PF00175 Oxidoreductase NAD-binding domain SH04_RS08240 PF00111 2Fe-2S iron-sulfur cluster binding domain SH04_RS08240 PF00970 Oxidoreductase FAD-binding domain SH04_RS08245 PF03063 Prismane/CO dehydrogenase family SH04_RS08250 PF03956 Lysine exporter LysO SH04_RS08255 PF00230 Major intrinsic protein SH04_RS08265 PF11398 Protein of unknown function (DUF2813) SH04_RS08270 PF04393 Protein of unknown function (DUF535) SH04_RS08275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH04_RS08280 PF02687 FtsX-like permease family SH04_RS08280 PF12704 MacB-like periplasmic core domain SH04_RS08280 PF00005 ABC transporter SH04_RS08285 PF00313 'Cold-shock' DNA-binding domain SH04_RS08290 PF02617 ATP-dependent Clp protease adaptor protein ClpS SH04_RS08295 PF07724 AAA domain (Cdc48 subfamily) SH04_RS08295 PF17871 AAA lid domain SH04_RS08295 PF00004 ATPase family associated with various cellular activities (AAA) SH04_RS08295 PF10431 C-terminal, D2-small domain, of ClpB protein SH04_RS08295 PF02861 Clp amino terminal domain, pathogenicity island component SH04_RS08305 PF01176 Translation initiation factor 1A / IF-1 SH04_RS08310 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SH04_RS08315 PF00005 ABC transporter SH04_RS08315 PF00664 ABC transporter transmembrane region SH04_RS08320 PF00664 ABC transporter transmembrane region SH04_RS08320 PF00005 ABC transporter SH04_RS08325 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH04_RS08330 PF01037 Lrp/AsnC ligand binding domain SH04_RS08335 PF17854 FtsK alpha domain SH04_RS08335 PF09397 Ftsk gamma domain SH04_RS08335 PF01580 FtsK/SpoIIIE family SH04_RS08335 PF13491 4TM region of DNA translocase FtsK/SpoIIIE SH04_RS08340 PF03548 Outer membrane lipoprotein carrier protein LolA SH04_RS08345 PF16193 AAA C-terminal domain SH04_RS08345 PF12002 MgsA AAA+ ATPase C terminal SH04_RS08345 PF00004 ATPase family associated with various cellular activities (AAA) SH04_RS08350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH04_RS08350 PF02403 Seryl-tRNA synthetase N-terminal domain SH04_RS08355 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS08355 PF01568 Molydopterin dinucleotide binding domain SH04_RS08355 PF00384 Molybdopterin oxidoreductase SH04_RS08360 PF13247 4Fe-4S dicluster domain SH04_RS08360 PF12800 4Fe-4S binding domain SH04_RS08365 PF04976 DMSO reductase anchor subunit (DmsC) SH04_RS08370 PF00857 Isochorismatase family SH04_RS08375 PF07690 Major Facilitator Superfamily SH04_RS08380 PF13520 Amino acid permease SH04_RS08385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS08385 PF03466 LysR substrate binding domain SH04_RS08390 PF02525 Flavodoxin-like fold SH04_RS08395 PF04055 Radical SAM superfamily SH04_RS08400 PF01228 Glycine radical SH04_RS08400 PF02901 Pyruvate formate lyase-like SH04_RS08405 PF01226 Formate/nitrite transporter SH04_RS08410 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding SH04_RS08410 PF18381 YcaO cyclodehydratase C-terminal domain SH04_RS08415 PF04239 Protein of unknown function (DUF421) SH04_RS08420 PF00266 Aminotransferase class-V SH04_RS08425 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SH04_RS08430 PF01435 Peptidase family M48 SH04_RS08435 PF02224 Cytidylate kinase SH04_RS08440 PF00575 S1 RNA binding domain SH04_RS08445 PF00216 Bacterial DNA-binding protein SH04_RS08450 PF00753 Metallo-beta-lactamase superfamily SH04_RS08450 PF03772 Competence protein SH04_RS08455 PF00664 ABC transporter transmembrane region SH04_RS08455 PF00005 ABC transporter SH04_RS08460 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SH04_RS08465 PF06224 Winged helix DNA-binding domain SH04_RS08470 PF03966 Trm112p-like protein SH04_RS08475 PF02348 Cytidylyltransferase SH04_RS08480 PF01636 Phosphotransferase enzyme family SH04_RS08485 PF02698 DUF218 domain SH04_RS08490 PF13847 Methyltransferase domain SH04_RS08495 PF03882 MukF winged-helix domain SH04_RS08495 PF17193 MukF C-terminal domain SH04_RS08495 PF17192 MukF middle domain SH04_RS08500 PF04288 MukE-like family SH04_RS08505 PF04310 MukB N-terminal SH04_RS08505 PF16330 MukB hinge domain SH04_RS08510 PF01471 Putative peptidoglycan binding domain SH04_RS08510 PF03734 L,D-transpeptidase catalytic domain SH04_RS08515 PF05951 Bacterial protein of unknown function (DUF882) SH04_RS08520 PF00753 Metallo-beta-lactamase superfamily SH04_RS08525 PF00155 Aminotransferase class I and II SH04_RS08535 PF00267 Gram-negative porin SH04_RS08540 PF01336 OB-fold nucleic acid binding domain SH04_RS08540 PF00152 tRNA synthetases class II (D, K and N) SH04_RS08545 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SH04_RS08545 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SH04_RS08550 PF11940 Domain of unknown function (DUF3458) Ig-like fold SH04_RS08550 PF17432 Domain of unknown function (DUF3458_C) ARM repeats SH04_RS08550 PF01433 Peptidase family M1 domain SH04_RS08555 PF00005 ABC transporter SH04_RS08560 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS08565 PF00296 Luciferase-like monooxygenase SH04_RS08570 PF09084 NMT1/THI5 like SH04_RS08575 PF03358 NADPH-dependent FMN reductase SH04_RS08580 PF00419 Fimbrial protein SH04_RS08585 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH04_RS08585 PF02753 Pili assembly chaperone PapD, C-terminal domain SH04_RS08590 PF13953 PapC C-terminal domain SH04_RS08590 PF13954 PapC N-terminal domain SH04_RS08590 PF00577 Outer membrane usher protein SH04_RS08595 PF00419 Fimbrial protein SH04_RS08600 PF00419 Fimbrial protein SH04_RS08605 PF00419 Fimbrial protein SH04_RS08610 PF02753 Pili assembly chaperone PapD, C-terminal domain SH04_RS08610 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH04_RS08615 PF01180 Dihydroorotate dehydrogenase SH04_RS08620 PF07126 Cell-division protein ZapC SH04_RS08625 PF03473 MOSC domain SH04_RS08625 PF03476 MOSC N-terminal beta barrel domain SH04_RS08625 PF00111 2Fe-2S iron-sulfur cluster binding domain SH04_RS08630 PF10672 S-adenosylmethionine-dependent methyltransferase SH04_RS08630 PF02926 THUMP domain SH04_RS08630 PF01170 Putative RNA methylase family UPF0020 SH04_RS08635 PF12848 ABC transporter SH04_RS08635 PF16326 ABC transporter C-terminal domain SH04_RS08635 PF00005 ABC transporter SH04_RS08640 PF04403 Paraquat-inducible protein A SH04_RS08645 PF02470 MlaD protein SH04_RS08650 PF03886 ABC-type transport auxiliary lipoprotein component SH04_RS08655 PF04957 Ribosome modulation factor SH04_RS08660 PF07977 FabA-like domain SH04_RS08665 PF05362 Lon protease (S16) C-terminal proteolytic domain SH04_RS08665 PF13654 AAA domain SH04_RS08670 PF17414 MatP C-terminal ribbon-helix-helix domain SH04_RS08670 PF06303 MatP N-terminal domain SH04_RS08675 PF01389 OmpA-like transmembrane domain SH04_RS08675 PF00691 OmpA family SH04_RS08685 PF03846 Cell division inhibitor SulA SH04_RS08690 PF04993 TfoX N-terminal domain SH04_RS08690 PF04994 TfoX C-terminal domain SH04_RS08695 PF12805 FUSC-like inner membrane protein yccS SH04_RS08700 PF03733 Inner membrane component domain SH04_RS08705 PF13361 UvrD-like helicase C-terminal domain SH04_RS08705 PF00580 UvrD/REP helicase N-terminal domain SH04_RS08705 PF12462 DNA helicase IV / RNA helicase N terminal SH04_RS08710 PF02142 MGS-like domain SH04_RS08715 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) SH04_RS08725 PF13380 CoA binding domain SH04_RS08730 PF08755 Hemimethylated DNA-binding protein YccV like SH04_RS08735 PF10672 S-adenosylmethionine-dependent methyltransferase SH04_RS08735 PF17785 PUA-like domain SH04_RS08740 PF00708 Acylphosphatase SH04_RS08745 PF04358 DsrC like protein SH04_RS08750 PF01027 Inhibitor of apoptosis-promoting Bax1 SH04_RS08760 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH04_RS08760 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SH04_RS08765 PF00374 Nickel-dependent hydrogenase SH04_RS08770 PF01292 Prokaryotic cytochrome b561 SH04_RS08775 PF01750 Hydrogenase maturation protease SH04_RS08780 PF07449 Hydrogenase-1 expression protein HyaE SH04_RS08785 PF04809 HupH hydrogenase expression protein, C-terminal conserved region SH04_RS08790 PF01654 Cytochrome bd terminal oxidase subunit I SH04_RS08795 PF02322 Cytochrome bd terminal oxidase subunit II SH04_RS08800 PF08173 Membrane bound YbgT-like protein SH04_RS08805 PF00328 Histidine phosphatase superfamily (branch 2) SH04_RS08810 PF02706 Chain length determinant protein SH04_RS08810 PF13807 G-rich domain on putative tyrosine kinase SH04_RS08810 PF13614 AAA domain SH04_RS08815 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH04_RS08820 PF18412 Outer-membrane lipoprotein Wza C-terminal domain SH04_RS08820 PF02563 Polysaccharide biosynthesis/export protein SH04_RS08820 PF10531 SLBB domain SH04_RS08825 PF06082 Exopolysaccharide biosynthesis protein YbjH SH04_RS08830 PF06251 Capsule biosynthesis GfcC SH04_RS08835 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF SH04_RS08850 PF03400 IS1 transposase SH04_RS08855 PF00313 'Cold-shock' DNA-binding domain SH04_RS08860 PF00313 'Cold-shock' DNA-binding domain SH04_RS08865 PF15939 Putative antitoxin of bacterial toxin-antitoxin system SH04_RS08870 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system SH04_RS08875 PF12801 4Fe-4S binding domain SH04_RS08880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS08880 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS08880 PF00072 Response regulator receiver domain SH04_RS08880 PF00672 HAMP domain SH04_RS08880 PF01627 Hpt domain SH04_RS08885 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH04_RS08890 PF00486 Transcriptional regulatory protein, C terminal SH04_RS08890 PF00072 Response regulator receiver domain SH04_RS08895 PF03264 NapC/NirT cytochrome c family, N-terminal region SH04_RS08900 PF01568 Molydopterin dinucleotide binding domain SH04_RS08900 PF00384 Molybdopterin oxidoreductase SH04_RS08900 PF18364 Molybdopterin oxidoreductase N-terminal domain SH04_RS08905 PF02613 Nitrate reductase delta subunit SH04_RS08915 PF01556 DnaJ C terminal domain SH04_RS08915 PF00226 DnaJ domain SH04_RS08925 PF00328 Histidine phosphatase superfamily (branch 2) SH04_RS08930 PF13993 YccJ-like protein SH04_RS08935 PF03358 NADPH-dependent FMN reductase SH04_RS08945 PF10685 Stress-induced bacterial acidophilic repeat motif SH04_RS08950 PF00860 Permease family SH04_RS08955 PF01613 Flavin reductase like domain SH04_RS08960 PF00881 Nitroreductase family SH04_RS08965 PF12697 Alpha/beta hydrolase family SH04_RS08970 PF01042 Endoribonuclease L-PSP SH04_RS08975 PF00857 Isochorismatase family SH04_RS08980 PF00296 Luciferase-like monooxygenase SH04_RS08985 PF08362 YcdC-like protein, C-terminal region SH04_RS08985 PF00440 Bacterial regulatory proteins, tetR family SH04_RS08990 PF01619 Proline dehydrogenase SH04_RS08990 PF18327 Proline utilization A proline dehydrogenase N-terminal domain SH04_RS08990 PF00171 Aldehyde dehydrogenase family SH04_RS08990 PF14850 DNA-binding domain of Proline dehydrogenase SH04_RS09000 PF00474 Sodium:solute symporter family SH04_RS09015 PF09375 Imelysin SH04_RS09015 PF13473 Cupredoxin-like domain SH04_RS09020 PF04261 Dyp-type peroxidase family SH04_RS09030 PF02562 PhoH-like protein SH04_RS09035 PF13994 PgaD-like protein SH04_RS09040 PF00535 Glycosyl transferase family 2 SH04_RS09045 PF14883 Hypothetical glycosyl hydrolase family 13 SH04_RS09045 PF01522 Polysaccharide deacetylase SH04_RS09055 PF17158 Membrane-associated sensor, integral membrane domain SH04_RS09055 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS09060 PF13276 HTH-like domain SH04_RS09060 PF13333 Integrase core domain SH04_RS09060 PF00665 Integrase core domain SH04_RS09065 PF01527 Transposase SH04_RS09090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH04_RS09095 PF02811 PHP domain SH04_RS09100 PF02613 Nitrate reductase delta subunit SH04_RS09105 PF06496 Protein of unknown function (DUF1097) SH04_RS09110 PF03783 Curli production assembly/transport component CsgG SH04_RS09115 PF10614 Type VIII secretion system (T8SS), CsgF protein SH04_RS09120 PF10627 Curli assembly protein CsgE SH04_RS09125 PF00196 Bacterial regulatory proteins, luxR family SH04_RS09135 PF07012 Curlin associated repeat SH04_RS09140 PF07012 Curlin associated repeat SH04_RS09145 PF10610 Thin aggregative fimbriae synthesis protein SH04_RS09155 PF01661 Macro domain SH04_RS09160 PF13091 PLD-like domain SH04_RS09165 PF01757 Acyltransferase family SH04_RS09180 PF04349 Periplasmic glucan biosynthesis protein, MdoG SH04_RS09185 PF00535 Glycosyl transferase family 2 SH04_RS09190 PF07119 Protein of unknown function (DUF1375) SH04_RS09195 PF13984 MsyB protein SH04_RS09205 PF07690 Major Facilitator Superfamily SH04_RS09210 PF03279 Bacterial lipid A biosynthesis acyltransferase SH04_RS09215 PF00581 Rhodanese-like domain SH04_RS09215 PF12368 Rhodanase C-terminal SH04_RS09215 PF17773 UPF0176 acylphosphatase like domain SH04_RS09220 PF04264 YceI-like domain SH04_RS09225 PF01292 Prokaryotic cytochrome b561 SH04_RS09230 PF10968 Protein of unknown function (DUF2770) SH04_RS09235 PF01266 FAD dependent oxidoreductase SH04_RS09240 PF13991 BssS protein family SH04_RS09245 PF06183 DinI-like family SH04_RS09250 PF01979 Amidohydrolase family SH04_RS09255 PF07273 Protein of unknown function (DUF1439) SH04_RS09260 PF04399 Glutaredoxin 2, C terminal domain SH04_RS09260 PF13417 Glutathione S-transferase, N-terminal domain SH04_RS09265 PF07690 Major Facilitator Superfamily SH04_RS09270 PF13302 Acetyltransferase (GNAT) domain SH04_RS09275 PF04337 Protein of unknown function, DUF480 SH04_RS09280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH04_RS09285 PF03023 Lipid II flippase MurJ SH04_RS09290 PF05130 FlgN protein SH04_RS09295 PF04316 Anti-sigma-28 factor, FlgM SH04_RS09300 PF13144 Chaperone for flagella basal body P-ring formation SH04_RS09305 PF00460 Flagella basal body rod protein SH04_RS09310 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH04_RS09310 PF00460 Flagella basal body rod protein SH04_RS09315 PF13860 FlgD Ig-like domain SH04_RS09315 PF13861 FlgD Tudor-like domain SH04_RS09315 PF03963 Flagellar hook capping protein - N-terminal region SH04_RS09320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH04_RS09320 PF00460 Flagella basal body rod protein SH04_RS09320 PF07559 Flagellar basal body protein FlaE SH04_RS09325 PF00460 Flagella basal body rod protein SH04_RS09325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH04_RS09330 PF00460 Flagella basal body rod protein SH04_RS09330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH04_RS09335 PF02107 Flagellar L-ring protein SH04_RS09340 PF02119 Flagellar P-ring protein SH04_RS09345 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH04_RS09345 PF10135 Rod binding protein SH04_RS09350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH04_RS09350 PF00460 Flagella basal body rod protein SH04_RS09355 PF00669 Bacterial flagellin N-terminal helical region SH04_RS09360 PF00575 S1 RNA binding domain SH04_RS09360 PF10150 Ribonuclease E/G family SH04_RS09360 PF12111 Polyribonucleotide phosphorylase C terminal SH04_RS09370 PF00849 RNA pseudouridylate synthase SH04_RS09370 PF01479 S4 domain SH04_RS09375 PF02545 Maf-like protein SH04_RS09380 PF02620 Large ribosomal RNA subunit accumulation protein YceD SH04_RS09385 PF01783 Ribosomal L32p protein family SH04_RS09390 PF02504 Fatty acid synthesis protein SH04_RS09395 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SH04_RS09395 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SH04_RS09400 PF00698 Acyl transferase domain SH04_RS09410 PF00550 Phosphopantetheine attachment site SH04_RS09415 PF00109 Beta-ketoacyl synthase, N-terminal domain SH04_RS09415 PF02801 Beta-ketoacyl synthase, C-terminal domain SH04_RS09420 PF01063 Amino-transferase class IV SH04_RS09425 PF02618 YceG-like family SH04_RS09430 PF02223 Thymidylate kinase SH04_RS09435 PF09115 DNA polymerase III, delta subunit, C terminal SH04_RS09440 PF01026 TatD related DNase SH04_RS09445 PF00367 phosphotransferase system, EIIB SH04_RS09445 PF02378 Phosphotransferase system, EIIC SH04_RS09450 PF00593 TonB dependent receptor SH04_RS09450 PF07715 TonB-dependent Receptor Plug Domain SH04_RS09455 PF01230 HIT domain SH04_RS09460 PF07233 Protein of unknown function (DUF1425) SH04_RS09465 PF13036 Peptidoglycan-synthase activator LpoB SH04_RS09470 PF01636 Phosphotransferase enzyme family SH04_RS09475 PF00933 Glycosyl hydrolase family 3 N terminal domain SH04_RS09480 PF05728 Uncharacterised protein family (UPF0227) SH04_RS09485 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH04_RS09490 PF05433 Glycine zipper 2TM domain SH04_RS09495 PF00440 Bacterial regulatory proteins, tetR family SH04_RS09500 PF07338 Protein of unknown function (DUF1471) SH04_RS09505 PF03734 L,D-transpeptidase catalytic domain SH04_RS09505 PF17969 L,D-transpeptidase C-terminal domain SH04_RS09505 PF01476 LysM domain SH04_RS09510 PF00270 DEAD/DEAH box helicase SH04_RS09510 PF00271 Helicase conserved C-terminal domain SH04_RS09510 PF03461 TRCF domain SH04_RS09510 PF02559 CarD-like/TRCF domain SH04_RS09510 PF17757 UvrB interaction domain SH04_RS09515 PF01757 Acyltransferase family SH04_RS09520 PF02687 FtsX-like permease family SH04_RS09520 PF12704 MacB-like periplasmic core domain SH04_RS09525 PF00005 ABC transporter SH04_RS09530 PF02687 FtsX-like permease family SH04_RS09530 PF12704 MacB-like periplasmic core domain SH04_RS09535 PF00480 ROK family SH04_RS09540 PF02146 Sir2 family SH04_RS09545 PF04536 TPM domain SH04_RS09550 PF12158 Protein of unknown function (DUF3592) SH04_RS09555 PF13416 Bacterial extracellular solute-binding protein SH04_RS09560 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS09565 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS09570 PF08402 TOBE domain SH04_RS09570 PF00005 ABC transporter SH04_RS09580 PF07687 Peptidase dimerisation domain SH04_RS09580 PF01546 Peptidase family M20/M25/M40 SH04_RS09585 PF08007 Cupin superfamily protein SH04_RS09590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS09590 PF08918 PhoQ Sensor SH04_RS09595 PF00072 Response regulator receiver domain SH04_RS09595 PF00486 Transcriptional regulatory protein, C terminal SH04_RS09600 PF00206 Lyase SH04_RS09600 PF08328 Adenylosuccinate lyase C-terminal SH04_RS09605 PF04356 Protein of unknown function (DUF489) SH04_RS09615 PF00293 NUDIX domain SH04_RS09620 PF00849 RNA pseudouridylate synthase SH04_RS09625 PF00180 Isocitrate/isopropylmalate dehydrogenase SH04_RS09640 PF07166 Protein of unknown function (DUF1398) SH04_RS09645 PF13411 MerR HTH family regulatory protein SH04_RS09650 PF00563 EAL domain SH04_RS09650 PF04940 Sensors of blue-light using FAD SH04_RS09655 PF10798 Biofilm development protein YmgB/AriR SH04_RS09665 PF10798 Biofilm development protein YmgB/AriR SH04_RS09675 PF12792 CSS motif domain associated with EAL SH04_RS09675 PF00563 EAL domain SH04_RS09700 PF16456 YmgD protein SH04_RS09705 PF13436 Glycine-zipper domain SH04_RS09720 PF03776 Septum formation topological specificity factor MinE SH04_RS09725 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SH04_RS09730 PF05209 Septum formation inhibitor MinC, N-terminal domain SH04_RS09730 PF03775 Septum formation inhibitor MinC, C-terminal domain SH04_RS09735 PF05666 Fels-1 Prophage Protein-like SH04_RS09740 PF04151 Bacterial pre-peptidase C-terminal domain SH04_RS09750 PF05166 YcgL domain SH04_RS09755 PF01557 Fumarylacetoacetate (FAA) hydrolase family SH04_RS09760 PF03692 Putative zinc- or iron-chelating domain SH04_RS09765 PF06109 Haemolysin E (HlyE) SH04_RS09770 PF00717 Peptidase S24-like SH04_RS09775 PF00817 impB/mucB/samB family SH04_RS09775 PF11798 IMS family HHH motif SH04_RS09775 PF13438 Domain of unknown function (DUF4113) SH04_RS09775 PF11799 impB/mucB/samB family C-terminal domain SH04_RS09780 PF02600 Disulfide bond formation protein DsbB SH04_RS09785 PF06450 Bacterial Na+/H+ antiporter B (NhaB) SH04_RS09790 PF00392 Bacterial regulatory proteins, gntR family SH04_RS09790 PF07840 FadR C-terminal domain SH04_RS09795 PF04293 SpoVR like protein SH04_RS09800 PF01266 FAD dependent oxidoreductase SH04_RS09805 PF01168 Alanine racemase, N-terminal domain SH04_RS09805 PF00842 Alanine racemase, C-terminal domain SH04_RS09810 PF02080 TrkA-C domain SH04_RS09810 PF03471 Transporter associated domain SH04_RS09810 PF00999 Sodium/hydrogen exchanger family SH04_RS09815 PF17676 LD-carboxypeptidase C-terminal domain SH04_RS09815 PF02016 LD-carboxypeptidase N-terminal domain SH04_RS09820 PF01464 Transglycosylase SLT domain SH04_RS09825 PF07238 PilZ domain SH04_RS09825 PF07317 Flagellar regulator YcgR SH04_RS09830 PF04226 Transglycosylase associated protein SH04_RS09840 PF01204 Trehalase SH04_RS09845 PF03610 PTS system fructose IIA component SH04_RS09845 PF05524 PEP-utilising enzyme, N-terminal SH04_RS09845 PF00391 PEP-utilising enzyme, mobile domain SH04_RS09845 PF00381 PTS HPr component phosphorylation site SH04_RS09850 PF02734 DAK2 domain SH04_RS09855 PF02733 Dak1 domain SH04_RS09860 PF02954 Bacterial regulatory protein, Fis family SH04_RS09860 PF00158 Sigma-54 interaction domain SH04_RS09860 PF00989 PAS fold SH04_RS09865 PF03797 Autotransporter beta-domain SH04_RS09865 PF03212 Pertactin SH04_RS09875 PF01926 50S ribosome-binding GTPase SH04_RS09875 PF06071 Protein of unknown function (DUF933) SH04_RS09880 PF01195 Peptidyl-tRNA hydrolase SH04_RS09885 PF10762 Protein of unknown function (DUF2583) SH04_RS09890 PF01740 STAS domain SH04_RS09890 PF00916 Sulfate permease family SH04_RS09895 PF14572 Phosphoribosyl synthetase-associated domain SH04_RS09895 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SH04_RS09900 PF00288 GHMP kinases N terminal domain SH04_RS09900 PF08544 GHMP kinases C terminal SH04_RS09905 PF03550 Outer membrane lipoprotein LolB SH04_RS09910 PF01488 Shikimate / quinate 5-dehydrogenase SH04_RS09910 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SH04_RS09910 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SH04_RS09915 PF00472 RF-1 domain SH04_RS09915 PF03462 PCRF domain SH04_RS09920 PF17827 PrmC N-terminal domain SH04_RS09920 PF13847 Methyltransferase domain SH04_RS09925 PF04247 Invasion gene expression up-regulator, SirB SH04_RS09930 PF13369 Transglutaminase-like superfamily SH04_RS09935 PF00793 DAHP synthetase I family SH04_RS09940 PF13940 Toxin Ldr, type I toxin-antitoxin system SH04_RS09945 PF13940 Toxin Ldr, type I toxin-antitoxin system SH04_RS09950 PF01699 Sodium/calcium exchanger protein SH04_RS09955 PF06150 ChaB SH04_RS09960 PF04752 ChaC-like protein SH04_RS09965 PF02635 DsrE/DsrF-like family SH04_RS09970 PF11924 Inverse autotransporter, beta-domain SH04_RS09975 PF00072 Response regulator receiver domain SH04_RS09975 PF00196 Bacterial regulatory proteins, luxR family SH04_RS09980 PF00672 HAMP domain SH04_RS09980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS09980 PF07730 Histidine kinase SH04_RS09980 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SH04_RS09990 PF07690 Major Facilitator Superfamily SH04_RS09995 PF00384 Molybdopterin oxidoreductase SH04_RS09995 PF01568 Molydopterin dinucleotide binding domain SH04_RS09995 PF14710 Respiratory nitrate reductase alpha N-terminal SH04_RS10000 PF14711 Respiratory nitrate reductase beta C-terminal SH04_RS10000 PF13247 4Fe-4S dicluster domain SH04_RS10005 PF02613 Nitrate reductase delta subunit SH04_RS10010 PF02665 Nitrate reductase gamma subunit SH04_RS10030 PF00551 Formyl transferase SH04_RS10030 PF01842 ACT domain SH04_RS10035 PF02810 SEC-C motif SH04_RS10040 PF01734 Patatin-like phospholipase SH04_RS10045 PF00072 Response regulator receiver domain SH04_RS10050 PF00483 Nucleotidyl transferase SH04_RS10055 PF00816 H-NS histone family SH04_RS10060 PF00265 Thymidine kinase SH04_RS10065 PF01609 Transposase DDE domain SH04_RS10065 PF13006 Insertion element 4 transposase N-terminal SH04_RS10075 PF00465 Iron-containing alcohol dehydrogenase SH04_RS10075 PF00171 Aldehyde dehydrogenase family SH04_RS10080 PF01914 MarC family integral membrane protein SH04_RS10085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH04_RS10090 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS10095 PF12911 N-terminal TM domain of oligopeptide transport permease C SH04_RS10095 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS10100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH04_RS10100 PF00005 ABC transporter SH04_RS10105 PF00005 ABC transporter SH04_RS10105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH04_RS10110 PF04269 Protein of unknown function, DUF440 SH04_RS10115 PF13091 PLD-like domain SH04_RS10115 PF13396 Phospholipase_D-nuclease N-terminal SH04_RS10125 PF07885 Ion channel SH04_RS10125 PF02254 TrkA-N domain SH04_RS10130 PF03795 YCII-related domain SH04_RS10135 PF03544 Gram-negative bacterial TonB protein C-terminal SH04_RS10140 PF03061 Thioesterase superfamily SH04_RS10145 PF04279 Intracellular septation protein A SH04_RS10155 PF03922 OmpW family SH04_RS10160 PF05974 Domain of unknown function (DUF892) SH04_RS10165 PF05974 Domain of unknown function (DUF892) SH04_RS10170 PF10685 Stress-induced bacterial acidophilic repeat motif SH04_RS10175 PF00290 Tryptophan synthase alpha chain SH04_RS10180 PF00291 Pyridoxal-phosphate dependent enzyme SH04_RS10185 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SH04_RS10185 PF00218 Indole-3-glycerol phosphate synthase SH04_RS10190 PF02885 Glycosyl transferase family, helical bundle domain SH04_RS10190 PF00591 Glycosyl transferase family, a/b domain SH04_RS10190 PF00117 Glutamine amidotransferase class-I SH04_RS10195 PF04715 Anthranilate synthase component I, N terminal region SH04_RS10195 PF00425 chorismate binding enzyme SH04_RS10200 PF02811 PHP domain SH04_RS10205 PF01300 Telomere recombination SH04_RS10210 PF09972 Predicted membrane protein (DUF2207) SH04_RS10215 PF01479 S4 domain SH04_RS10215 PF00849 RNA pseudouridylate synthase SH04_RS10220 PF12557 Cob(I)alamin adenosyltransferase N terminal SH04_RS10220 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP SH04_RS10225 PF00106 short chain dehydrogenase SH04_RS10235 PF08496 Peptidase family S49 N-terminal SH04_RS10235 PF01343 Peptidase family S49 SH04_RS10240 PF10692 Protein of unknown function (DUF2498) SH04_RS10250 PF08272 Topoisomerase I zinc-ribbon-like SH04_RS10250 PF01131 DNA topoisomerase SH04_RS10250 PF01751 Toprim domain SH04_RS10250 PF01396 Topoisomerase DNA binding C4 zinc finger SH04_RS10255 PF03466 LysR substrate binding domain SH04_RS10255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS10275 PF00330 Aconitase family (aconitate hydratase) SH04_RS10275 PF00694 Aconitase C-terminal domain SH04_RS10280 PF00925 GTP cyclohydrolase II SH04_RS10285 PF01569 PAP2 superfamily SH04_RS10290 PF06305 Lipopolysaccharide assembly protein A domain SH04_RS10295 PF18073 Rubredoxin metal binding domain SH04_RS10300 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH04_RS10305 PF01253 Translation initiation factor SUI1 SH04_RS10310 PF05433 Glycine zipper 2TM domain SH04_RS10315 PF00455 DeoR C terminal sensor domain SH04_RS10315 PF08220 DeoR-like helix-turn-helix domain SH04_RS10325 PF00563 EAL domain SH04_RS10325 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS10325 PF13426 PAS domain SH04_RS10335 PF08206 Ribonuclease B OB domain SH04_RS10335 PF17876 Cold shock domain SH04_RS10335 PF00773 RNB domain SH04_RS10335 PF00575 S1 RNA binding domain SH04_RS10350 PF04480 Protein of unknown function (DUF559) SH04_RS10355 PF00005 ABC transporter SH04_RS10360 PF00005 ABC transporter SH04_RS10360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH04_RS10365 PF12911 N-terminal TM domain of oligopeptide transport permease C SH04_RS10365 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS10370 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS10375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH04_RS10385 PF10820 Protein of unknown function (DUF2543) SH04_RS10390 PF00324 Amino acid permease SH04_RS10395 PF00120 Glutamine synthetase, catalytic domain SH04_RS10400 PF07722 Peptidase C26 SH04_RS10405 PF07883 Cupin domain SH04_RS10405 PF01381 Helix-turn-helix SH04_RS10410 PF00171 Aldehyde dehydrogenase family SH04_RS10415 PF01266 FAD dependent oxidoreductase SH04_RS10420 PF00202 Aminotransferase class-III SH04_RS10425 PF02954 Bacterial regulatory protein, Fis family SH04_RS10425 PF00158 Sigma-54 interaction domain SH04_RS10430 PF04012 PspA/IM30 family SH04_RS10435 PF06667 Phage shock protein B SH04_RS10440 PF04024 PspC domain SH04_RS10445 PF09584 Phage shock protein PspD (Phageshock_PspD) SH04_RS10450 PF00581 Rhodanese-like domain SH04_RS10455 PF00128 Alpha amylase, catalytic domain SH04_RS10460 PF01547 Bacterial extracellular solute-binding protein SH04_RS10465 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS10470 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS10475 PF00107 Zinc-binding dehydrogenase SH04_RS10480 PF01261 Xylose isomerase-like TIM barrel SH04_RS10485 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH04_RS10485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH04_RS10490 PF03633 Glycosyl hydrolase family 65, C-terminal domain SH04_RS10490 PF03632 Glycosyl hydrolase family 65 central catalytic domain SH04_RS10490 PF03636 Glycosyl hydrolase family 65, N-terminal domain SH04_RS10495 PF13419 Haloacid dehalogenase-like hydrolase SH04_RS10505 PF09381 Outer membrane protein G (OmpG) SH04_RS10510 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH04_RS10510 PF00356 Bacterial regulatory proteins, lacI family SH04_RS10515 PF04317 YcjX-like family, DUF463 SH04_RS10520 PF05128 Domain of unknown function (DUF697) SH04_RS10525 PF00158 Sigma-54 interaction domain SH04_RS10525 PF13188 PAS domain SH04_RS10525 PF18024 Helix-turn-helix domain SH04_RS10530 PF08534 Redoxin SH04_RS10535 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH04_RS10535 PF13378 Enolase C-terminal domain-like SH04_RS10540 PF00246 Zinc carboxypeptidase SH04_RS10550 PF12146 Serine aminopeptidase, S33 SH04_RS10555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS10555 PF03466 LysR substrate binding domain SH04_RS10565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH04_RS10570 PF00924 Mechanosensitive ion channel SH04_RS10575 PF05598 Transposase domain (DUF772) SH04_RS10575 PF01609 Transposase DDE domain SH04_RS10580 PF10749 Protein of unknown function (DUF2534) SH04_RS10585 PF00582 Universal stress protein family SH04_RS10590 PF00325 Bacterial regulatory proteins, crp family SH04_RS10590 PF00027 Cyclic nucleotide-binding domain SH04_RS10595 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SH04_RS10595 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH04_RS10600 PF03806 AbgT putative transporter family SH04_RS10610 PF01546 Peptidase family M20/M25/M40 SH04_RS10615 PF07687 Peptidase dimerisation domain SH04_RS10615 PF01546 Peptidase family M20/M25/M40 SH04_RS10620 PF03466 LysR substrate binding domain SH04_RS10620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS10630 PF01713 Smr domain SH04_RS10635 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS10635 PF08448 PAS fold SH04_RS10640 PF01544 CorA-like Mg2+ transporter protein SH04_RS10650 PF03880 DbpA RNA binding domain SH04_RS10650 PF00270 DEAD/DEAH box helicase SH04_RS10650 PF00271 Helicase conserved C-terminal domain SH04_RS10655 PF01171 PP-loop family SH04_RS10660 PF00589 Phage integrase family SH04_RS10660 PF12167 Arm DNA-binding domain SH04_RS10665 PF06806 Putative excisionase (DUF1233) SH04_RS10670 PF06688 Protein of unknown function (DUF1187) SH04_RS10680 PF03837 RecT family SH04_RS10685 PF12684 PDDEXK-like domain of unknown function (DUF3799) SH04_RS10685 PF06630 Enterobacterial exodeoxyribonuclease VIII SH04_RS10695 PF04181 Rtr1/RPAP2 family SH04_RS10705 PF14163 Super-infection exclusion protein B SH04_RS10715 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT SH04_RS10720 PF06254 Putative bacterial toxin ydaT SH04_RS10725 PF07120 Protein of unknown function (DUF1376) SH04_RS10730 PF01695 IstB-like ATP binding protein SH04_RS10735 PF07789 Protein of unknown function (DUF1627) SH04_RS10740 PF03245 Bacteriophage Rz lysis protein SH04_RS10745 PF02386 Cation transport protein SH04_RS10750 PF02195 ParB-like nuclease domain SH04_RS10765 PF06791 Prophage tail length tape measure protein SH04_RS10770 PF06316 Enterobacterial Ail/Lom protein SH04_RS10775 PF05598 Transposase domain (DUF772) SH04_RS10775 PF01609 Transposase DDE domain SH04_RS10780 PF13505 Outer membrane protein beta-barrel domain SH04_RS10795 PF03335 Phage tail fibre repeat SH04_RS10795 PF08400 Prophage tail fibre N-terminal SH04_RS10795 PF07484 Phage Tail Collar Domain SH04_RS10800 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH04_RS10805 PF00239 Resolvase, N terminal domain SH04_RS10805 PF02796 Helix-turn-helix domain of resolvase SH04_RS10815 PF00582 Universal stress protein family SH04_RS10820 PF00267 Gram-negative porin SH04_RS10825 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SH04_RS10825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH04_RS10825 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SH04_RS10825 PF10371 Domain of unknown function SH04_RS10825 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SH04_RS10830 PF03891 Domain of unknown function (DUF333) SH04_RS10835 PF03724 META domain SH04_RS10840 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH04_RS10840 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH04_RS10845 PF11739 Dicarboxylate transport SH04_RS10850 PF13617 YnbE-like lipoprotein SH04_RS10855 PF07027 Protein of unknown function (DUF1318) SH04_RS10860 PF12833 Helix-turn-helix domain SH04_RS10860 PF14525 AraC-binding-like domain SH04_RS10865 PF00171 Aldehyde dehydrogenase family SH04_RS10870 PF01179 Copper amine oxidase, enzyme domain SH04_RS10870 PF02728 Copper amine oxidase, N3 domain SH04_RS10870 PF02727 Copper amine oxidase, N2 domain SH04_RS10870 PF07833 Copper amine oxidase N-terminal domain SH04_RS10875 PF00171 Aldehyde dehydrogenase family SH04_RS10875 PF01575 MaoC like domain SH04_RS10880 PF05138 Phenylacetic acid catabolic protein SH04_RS10885 PF06243 Phenylacetic acid degradation B SH04_RS10890 PF05138 Phenylacetic acid catabolic protein SH04_RS10895 PF01883 Iron-sulfur cluster assembly protein SH04_RS10900 PF00175 Oxidoreductase NAD-binding domain SH04_RS10900 PF00111 2Fe-2S iron-sulfur cluster binding domain SH04_RS10900 PF00970 Oxidoreductase FAD-binding domain SH04_RS10905 PF00378 Enoyl-CoA hydratase/isomerase SH04_RS10910 PF00378 Enoyl-CoA hydratase/isomerase SH04_RS10915 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH04_RS10915 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain SH04_RS10915 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH04_RS10920 PF03061 Thioesterase superfamily SH04_RS10925 PF00108 Thiolase, N-terminal domain SH04_RS10925 PF02803 Thiolase, C-terminal domain SH04_RS10930 PF00501 AMP-binding enzyme SH04_RS10930 PF14535 AMP-binding enzyme C-terminal domain SH04_RS10935 PF07848 PaaX-like protein SH04_RS10935 PF08223 PaaX-like protein C-terminal domain SH04_RS10940 PF00132 Bacterial transferase hexapeptide (six repeats) SH04_RS10950 PF00665 Integrase core domain SH04_RS10950 PF13276 HTH-like domain SH04_RS10955 PF01527 Transposase SH04_RS10960 PF13936 Helix-turn-helix domain SH04_RS10960 PF00665 Integrase core domain SH04_RS10970 PF00248 Aldo/keto reductase family SH04_RS10975 PF10971 Protein of unknown function (DUF2773) SH04_RS10980 PF01066 CDP-alcohol phosphatidyltransferase SH04_RS10990 PF12146 Serine aminopeptidase, S33 SH04_RS10990 PF12147 Putative methyltransferase SH04_RS10995 PF00782 Dual specificity phosphatase, catalytic domain SH04_RS11000 PF02525 Flavodoxin-like fold SH04_RS11005 PF00271 Helicase conserved C-terminal domain SH04_RS11005 PF00270 DEAD/DEAH box helicase SH04_RS11005 PF11898 Domain of unknown function (DUF3418) SH04_RS11005 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold SH04_RS11005 PF04408 Helicase associated domain (HA2) SH04_RS11010 PF02698 DUF218 domain SH04_RS11015 PF00171 Aldehyde dehydrogenase family SH04_RS11020 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH04_RS11020 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH04_RS11025 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH04_RS11025 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH04_RS11030 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH04_RS11030 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH04_RS11035 PF01292 Prokaryotic cytochrome b561 SH04_RS11045 PF01848 Hok/gef family SH04_RS11050 PF02203 Tar ligand binding domain homologue SH04_RS11050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH04_RS11050 PF00672 HAMP domain SH04_RS11055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS11055 PF03466 LysR substrate binding domain SH04_RS11060 PF07063 Domain of unknown function (DUF1338) SH04_RS11065 PF04349 Periplasmic glucan biosynthesis protein, MdoG SH04_RS11075 PF04325 Protein of unknown function (DUF465) SH04_RS11080 PF13302 Acetyltransferase (GNAT) domain SH04_RS11085 PF18836 Beta solenoid repeat from YDCK SH04_RS11090 PF03595 Voltage-dependent anion channel SH04_RS11095 PF03848 Tellurite resistance protein TehB SH04_RS11100 PF11769 Protein of unknown function (DUF3313) SH04_RS11110 PF01797 Transposase IS200 like SH04_RS11115 PF01385 Probable transposase SH04_RS11115 PF12323 Helix-turn-helix domain SH04_RS11115 PF07282 Putative transposase DNA-binding domain SH04_RS11120 PF03594 Benzoate membrane transport protein SH04_RS11125 PF07883 Cupin domain SH04_RS11125 PF01381 Helix-turn-helix SH04_RS11130 PF01136 Peptidase family U32 SH04_RS11130 PF12392 Collagenase SH04_RS11135 PF10829 Protein of unknown function (DUF2554) SH04_RS11140 PF07927 HicA toxin of bacterial toxin-antitoxin, SH04_RS11145 PF01381 Helix-turn-helix SH04_RS11145 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system SH04_RS11150 PF00155 Aminotransferase class I and II SH04_RS11150 PF00392 Bacterial regulatory proteins, gntR family SH04_RS11155 PF13416 Bacterial extracellular solute-binding protein SH04_RS11160 PF08402 TOBE domain SH04_RS11160 PF00005 ABC transporter SH04_RS11165 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS11170 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS11175 PF00171 Aldehyde dehydrogenase family SH04_RS11185 PF10753 Toxin GhoT_OrtT SH04_RS11190 PF10735 Protein of unknown function (DUF2526) SH04_RS11195 PF04657 Putative inner membrane exporter, YdcZ SH04_RS11200 PF00583 Acetyltransferase (GNAT) family SH04_RS11205 PF16884 N-terminal domain of oxidoreductase SH04_RS11205 PF00107 Zinc-binding dehydrogenase SH04_RS11210 PF07729 FCD domain SH04_RS11210 PF00392 Bacterial regulatory proteins, gntR family SH04_RS11215 PF00593 TonB dependent receptor SH04_RS11215 PF07715 TonB-dependent Receptor Plug Domain SH04_RS11225 PF00324 Amino acid permease SH04_RS11230 PF13417 Glutathione S-transferase, N-terminal domain SH04_RS11235 PF17520 Family of unknown function (DUF5445) SH04_RS11240 PF03527 RHS protein SH04_RS11250 PF13808 DDE_Tnp_1-associated SH04_RS11250 PF01609 Transposase DDE domain SH04_RS11255 PF13808 DDE_Tnp_1-associated SH04_RS11255 PF01609 Transposase DDE domain SH04_RS11260 PF01361 Tautomerase enzyme SH04_RS11265 PF01613 Flavin reductase like domain SH04_RS11270 PF00797 N-acetyltransferase SH04_RS11275 PF02567 Phenazine biosynthesis-like protein SH04_RS11280 PF02665 Nitrate reductase gamma subunit SH04_RS11285 PF02613 Nitrate reductase delta subunit SH04_RS11290 PF14711 Respiratory nitrate reductase beta C-terminal SH04_RS11290 PF13247 4Fe-4S dicluster domain SH04_RS11295 PF00384 Molybdopterin oxidoreductase SH04_RS11295 PF01568 Molydopterin dinucleotide binding domain SH04_RS11295 PF14710 Respiratory nitrate reductase alpha N-terminal SH04_RS11300 PF07690 Major Facilitator Superfamily SH04_RS11310 PF00267 Gram-negative porin SH04_RS11315 PF00892 EamA-like transporter family SH04_RS11320 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS11320 PF00384 Molybdopterin oxidoreductase SH04_RS11320 PF01568 Molydopterin dinucleotide binding domain SH04_RS11325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS11325 PF00384 Molybdopterin oxidoreductase SH04_RS11325 PF01568 Molydopterin dinucleotide binding domain SH04_RS11330 PF13247 4Fe-4S dicluster domain SH04_RS11330 PF09163 Formate dehydrogenase N, transmembrane SH04_RS11330 PF12800 4Fe-4S binding domain SH04_RS11335 PF01292 Prokaryotic cytochrome b561 SH04_RS11340 PF01381 Helix-turn-helix SH04_RS11345 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS11345 PF00107 Zinc-binding dehydrogenase SH04_RS11350 PF00390 Malic enzyme, N-terminal domain SH04_RS11350 PF03949 Malic enzyme, NAD binding domain SH04_RS11355 PF08136 30S ribosomal protein subunit S22 family SH04_RS11360 PF10684 Putative biofilm-dependent modulation protein SH04_RS11365 PF02566 OsmC-like protein SH04_RS11370 PF00005 ABC transporter SH04_RS11370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH04_RS11375 PF00005 ABC transporter SH04_RS11375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH04_RS11380 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS11380 PF12911 N-terminal TM domain of oligopeptide transport permease C SH04_RS11385 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS11390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH04_RS11395 PF01427 D-ala-D-ala dipeptidase SH04_RS11400 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS11400 PF00563 EAL domain SH04_RS11400 PF13426 PAS domain SH04_RS11405 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS11410 PF02638 Glycosyl hydrolase-like 10 SH04_RS11415 PF13520 Amino acid permease SH04_RS11420 PF00282 Pyridoxal-dependent decarboxylase conserved domain SH04_RS11430 PF00675 Insulinase (Peptidase family M16) SH04_RS11430 PF05193 Peptidase M16 inactive domain SH04_RS11435 PF07715 TonB-dependent Receptor Plug Domain SH04_RS11440 PF06472 ABC transporter transmembrane region 2 SH04_RS11440 PF00005 ABC transporter SH04_RS11445 PF13186 Iron-sulfur cluster-binding domain SH04_RS11445 PF04055 Radical SAM superfamily SH04_RS11450 PF00884 Sulfatase SH04_RS11455 PF12833 Helix-turn-helix domain SH04_RS11460 PF17073 Two-component-system connector protein SH04_RS11465 PF00384 Molybdopterin oxidoreductase SH04_RS11470 PF09160 FimH, mannose binding SH04_RS11475 PF00419 Fimbrial protein SH04_RS11480 PF00419 Fimbrial protein SH04_RS11485 PF00577 Outer membrane usher protein SH04_RS11485 PF13953 PapC C-terminal domain SH04_RS11495 PF07804 HipA-like C-terminal domain SH04_RS11495 PF13657 HipA N-terminal domain SH04_RS11500 PF01381 Helix-turn-helix SH04_RS11505 PF03797 Autotransporter beta-domain SH04_RS11510 PF13018 Extended Signal Peptide of Type V secretion system SH04_RS11515 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH04_RS11515 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH04_RS11520 PF04198 Putative sugar-binding domain SH04_RS11525 PF00005 ABC transporter SH04_RS11530 PF02653 Branched-chain amino acid transport system / permease component SH04_RS11535 PF02653 Branched-chain amino acid transport system / permease component SH04_RS11540 PF13407 Periplasmic binding protein domain SH04_RS11545 PF01791 DeoC/LacD family aldolase SH04_RS11550 PF03992 Antibiotic biosynthesis monooxygenase SH04_RS11555 PF13649 Methyltransferase domain SH04_RS11560 PF01062 Bestrophin, RFP-TM, chloride channel SH04_RS11570 PF01232 Mannitol dehydrogenase Rossmann domain SH04_RS11570 PF08125 Mannitol dehydrogenase C-terminal domain SH04_RS11575 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS11580 PF13811 Domain of unknown function (DUF4186) SH04_RS11585 PF04960 Glutaminase SH04_RS11590 PF00171 Aldehyde dehydrogenase family SH04_RS11595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS11595 PF03466 LysR substrate binding domain SH04_RS11605 PF07690 Major Facilitator Superfamily SH04_RS11610 PF01914 MarC family integral membrane protein SH04_RS11615 PF01047 MarR family SH04_RS11620 PF12833 Helix-turn-helix domain SH04_RS11625 PF13999 MarB protein SH04_RS11630 PF00892 EamA-like transporter family SH04_RS11635 PF07690 Major Facilitator Superfamily SH04_RS11645 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS11650 PF04076 Bacterial OB fold (BOF) protein SH04_RS11655 PF02464 Competence-damaged protein SH04_RS11660 PF01432 Peptidase family M3 SH04_RS11665 PF00106 short chain dehydrogenase SH04_RS11670 PF07729 FCD domain SH04_RS11670 PF00392 Bacterial regulatory proteins, gntR family SH04_RS11675 PF14001 YdfZ protein SH04_RS11680 PF08125 Mannitol dehydrogenase C-terminal domain SH04_RS11680 PF01232 Mannitol dehydrogenase Rossmann domain SH04_RS11685 PF07690 Major Facilitator Superfamily SH04_RS11685 PF00083 Sugar (and other) transporter SH04_RS11695 PF02796 Helix-turn-helix domain of resolvase SH04_RS11695 PF00239 Resolvase, N terminal domain SH04_RS11700 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH04_RS11705 PF03335 Phage tail fibre repeat SH04_RS11705 PF07484 Phage Tail Collar Domain SH04_RS11710 PF07471 Phage DNA packaging protein Nu1 SH04_RS11715 PF13132 Domain of unknown function (DUF3950) SH04_RS11720 PF07166 Protein of unknown function (DUF1398) SH04_RS11725 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system SH04_RS11735 PF00313 'Cold-shock' DNA-binding domain SH04_RS11740 PF10721 Protein of unknown function (DUF2514) SH04_RS11745 PF00959 Phage lysozyme SH04_RS11750 PF07041 Protein of unknown function (DUF1327) SH04_RS11755 PF04971 Bacteriophage P21 holin S SH04_RS11760 PF00313 'Cold-shock' DNA-binding domain SH04_RS11765 PF00313 'Cold-shock' DNA-binding domain SH04_RS11770 PF03589 Antitermination protein SH04_RS11775 PF06147 Protein of unknown function (DUF968) SH04_RS11790 PF01848 Hok/gef family SH04_RS11795 PF05016 ParE toxin of type II toxin-antitoxin system, parDE SH04_RS11800 PF04221 RelB antitoxin SH04_RS11805 PF14282 FlxA-like protein SH04_RS11820 PF01381 Helix-turn-helix SH04_RS11825 PF07151 Protein of unknown function (DUF1391) SH04_RS11840 PF05358 DicB protein SH04_RS11845 PF07358 Protein of unknown function (DUF1482) SH04_RS11860 PF00589 Phage integrase family SH04_RS11860 PF12167 Arm DNA-binding domain SH04_RS11865 PF00107 Zinc-binding dehydrogenase SH04_RS11865 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS11870 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH04_RS11870 PF13378 Enolase C-terminal domain-like SH04_RS11875 PF02694 Uncharacterised BCR, YnfA/UPF0060 family SH04_RS11880 PF06932 Protein of unknown function (DUF1283) SH04_RS11885 PF13302 Acetyltransferase (GNAT) domain SH04_RS11890 PF06788 Uncharacterised protein family (UPF0257) SH04_RS11895 PF06649 Protein of unknown function (DUF1161) SH04_RS11900 PF00384 Molybdopterin oxidoreductase SH04_RS11900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS11900 PF01568 Molydopterin dinucleotide binding domain SH04_RS11905 PF01568 Molydopterin dinucleotide binding domain SH04_RS11905 PF00384 Molybdopterin oxidoreductase SH04_RS11905 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS11910 PF12800 4Fe-4S binding domain SH04_RS11910 PF13247 4Fe-4S dicluster domain SH04_RS11915 PF04976 DMSO reductase anchor subunit (DmsC) SH04_RS11920 PF02613 Nitrate reductase delta subunit SH04_RS11925 PF00654 Voltage gated chloride channel SH04_RS11935 PF00480 ROK family SH04_RS11940 PF03466 LysR substrate binding domain SH04_RS11940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS11945 PF07690 Major Facilitator Superfamily SH04_RS11960 PF00089 Trypsin SH04_RS11965 PF00893 Small Multidrug Resistance protein SH04_RS11970 PF00893 Small Multidrug Resistance protein SH04_RS11975 PF01594 AI-2E family transporter SH04_RS11980 PF02233 NAD(P) transhydrogenase beta subunit SH04_RS11985 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SH04_RS11985 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SH04_RS11985 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch SH04_RS11990 PF07338 Protein of unknown function (DUF1471) SH04_RS11995 PF13520 Amino acid permease SH04_RS12005 PF06942 GlpM protein SH04_RS12010 PF00486 Transcriptional regulatory protein, C terminal SH04_RS12010 PF00072 Response regulator receiver domain SH04_RS12015 PF00672 HAMP domain SH04_RS12015 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS12015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS12020 PF05472 DNA replication terminus site-binding protein (Ter protein) SH04_RS12025 PF00206 Lyase SH04_RS12025 PF10415 Fumarase C C-terminus SH04_RS12030 PF05681 Fumarate hydratase (Fumerase) SH04_RS12030 PF05683 Fumarase C-terminus SH04_RS12035 PF01238 Phosphomannose isomerase type I SH04_RS12040 PF06097 Bacterial protein of unknown function (DUF945) SH04_RS12045 PF03573 outer membrane porin, OprD family SH04_RS12055 PF00703 Glycosyl hydrolases family 2 SH04_RS12055 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH04_RS12055 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH04_RS12060 PF00440 Bacterial regulatory proteins, tetR family SH04_RS12070 PF00356 Bacterial regulatory proteins, lacI family SH04_RS12070 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH04_RS12075 PF00367 phosphotransferase system, EIIB SH04_RS12075 PF02378 Phosphotransferase system, EIIC SH04_RS12080 PF00155 Aminotransferase class I and II SH04_RS12085 PF00962 Adenosine/AMP deaminase SH04_RS12090 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH04_RS12090 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH04_RS12100 PF05321 Haemolysin expression modulating protein SH04_RS12105 PF10754 Protein of unknown function (DUF2569) SH04_RS12110 PF02508 Rnf-Nqr subunit, membrane protein SH04_RS12115 PF04060 Putative Fe-S cluster SH04_RS12120 PF10531 SLBB domain SH04_RS12120 PF13375 RnfC Barrel sandwich hybrid domain SH04_RS12120 PF12838 4Fe-4S dicluster domain SH04_RS12120 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SH04_RS12125 PF03116 NQR2, RnfD, RnfE family SH04_RS12130 PF04205 FMN-binding domain SH04_RS12135 PF02508 Rnf-Nqr subunit, membrane protein SH04_RS12140 PF10576 Iron-sulfur binding domain of endonuclease III SH04_RS12140 PF00633 Helix-hairpin-helix motif SH04_RS12140 PF00730 HhH-GPD superfamily base excision DNA repair protein SH04_RS12150 PF00854 POT family SH04_RS12155 PF00043 Glutathione S-transferase, C-terminal domain SH04_RS12155 PF02798 Glutathione S-transferase, N-terminal domain SH04_RS12160 PF08543 Phosphomethylpyrimidine kinase SH04_RS12165 PF00579 tRNA synthetases class I (W and Y) SH04_RS12165 PF01479 S4 domain SH04_RS12170 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region SH04_RS12170 PF01243 Pyridoxamine 5'-phosphate oxidase SH04_RS12175 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme SH04_RS12180 PF03702 Anhydro-N-acetylmuramic acid kinase SH04_RS12185 PF05433 Glycine zipper 2TM domain SH04_RS12190 PF01047 MarR family SH04_RS12195 PF07869 Protein of unknown function (DUF1656) SH04_RS12200 PF00529 HlyD membrane-fusion protein of T1SS SH04_RS12200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH04_RS12205 PF04632 Fusaric acid resistance protein family SH04_RS12210 PF00080 Copper/zinc superoxide dismutase (SODC) SH04_RS12215 PF00248 Aldo/keto reductase family SH04_RS12220 PF06945 Protein of unknown function (DUF1289) SH04_RS12225 PF00440 Bacterial regulatory proteins, tetR family SH04_RS12225 PF16925 Tetracyclin repressor-like, C-terminal domain SH04_RS12230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SH04_RS12235 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH04_RS12240 PF00929 Exonuclease SH04_RS12245 PF00270 DEAD/DEAH box helicase SH04_RS12245 PF08494 DEAD/H associated SH04_RS12245 PF00271 Helicase conserved C-terminal domain SH04_RS12250 PF00462 Glutaredoxin SH04_RS12255 PF00877 NlpC/P60 family SH04_RS12260 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SH04_RS12260 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SH04_RS12265 PF07690 Major Facilitator Superfamily SH04_RS12275 PF00356 Bacterial regulatory proteins, lacI family SH04_RS12280 PF03466 LysR substrate binding domain SH04_RS12280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS12285 PF07690 Major Facilitator Superfamily SH04_RS12295 PF00677 Lumazine binding domain SH04_RS12300 PF01554 MatE SH04_RS12305 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH04_RS12305 PF03212 Pertactin SH04_RS12320 PF08803 Putative mono-oxygenase ydhR SH04_RS12325 PF13454 FAD-NAD(P)-binding SH04_RS12335 PF01292 Prokaryotic cytochrome b561 SH04_RS12340 PF13247 4Fe-4S dicluster domain SH04_RS12350 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 SH04_RS12350 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain SH04_RS12355 PF12800 4Fe-4S binding domain SH04_RS12355 PF13247 4Fe-4S dicluster domain SH04_RS12360 PF10965 Protein of unknown function (DUF2767) SH04_RS12365 PF00224 Pyruvate kinase, barrel domain SH04_RS12365 PF02887 Pyruvate kinase, alpha/beta domain SH04_RS12370 PF04728 Lipoprotein leucine-zipper SH04_RS12375 PF03734 L,D-transpeptidase catalytic domain SH04_RS12375 PF17969 L,D-transpeptidase C-terminal domain SH04_RS12375 PF01476 LysM domain SH04_RS12380 PF02657 Fe-S metabolism associated domain SH04_RS12385 PF00266 Aminotransferase class-V SH04_RS12390 PF01458 Uncharacterized protein family (UPF0051) SH04_RS12395 PF00005 ABC transporter SH04_RS12400 PF01458 Uncharacterized protein family (UPF0051) SH04_RS12405 PF01521 Iron-sulphur cluster biosynthesis SH04_RS12410 PF15930 Domain of unknown function SH04_RS12415 PF03061 Thioesterase superfamily SH04_RS12420 PF01565 FAD binding domain SH04_RS12420 PF13183 4Fe-4S dicluster domain SH04_RS12420 PF02913 FAD linked oxidases, C-terminal domain SH04_RS12425 PF01594 AI-2E family transporter SH04_RS12430 PF08965 Domain of unknown function (DUF1870) SH04_RS12435 PF07690 Major Facilitator Superfamily SH04_RS12440 PF07690 Major Facilitator Superfamily SH04_RS12445 PF08501 Shikimate dehydrogenase substrate binding domain SH04_RS12445 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SH04_RS12450 PF01487 Type I 3-dehydroquinase SH04_RS12455 PF01144 Coenzyme A transferase SH04_RS12460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH04_RS12460 PF02770 Acyl-CoA dehydrogenase, middle domain SH04_RS12460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH04_RS12465 PF02311 AraC-like ligand binding domain SH04_RS12465 PF12833 Helix-turn-helix domain SH04_RS12475 PF01012 Electron transfer flavoprotein domain SH04_RS12480 PF01012 Electron transfer flavoprotein domain SH04_RS12480 PF00766 Electron transfer flavoprotein FAD-binding domain SH04_RS12485 PF01494 FAD binding domain SH04_RS12495 PF13193 AMP-binding enzyme C-terminal domain SH04_RS12495 PF00501 AMP-binding enzyme SH04_RS12500 PF00391 PEP-utilising enzyme, mobile domain SH04_RS12500 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SH04_RS12500 PF02896 PEP-utilising enzyme, TIM barrel domain SH04_RS12510 PF03618 Kinase/pyrophosphorylase SH04_RS12515 PF00793 DAHP synthetase I family SH04_RS12520 PF10636 Hemin uptake protein hemP SH04_RS12525 PF02696 Uncharacterized ACR, YdiU/UPF0061 family SH04_RS12530 PF00563 EAL domain SH04_RS12535 PF00877 NlpC/P60 family SH04_RS12545 PF00255 Glutathione peroxidase SH04_RS12550 PF01032 FecCD transport family SH04_RS12555 PF00216 Bacterial DNA-binding protein SH04_RS12560 PF03147 Ferredoxin-fold anticodon binding domain SH04_RS12560 PF03483 B3/4 domain SH04_RS12560 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SH04_RS12560 PF03484 tRNA synthetase B5 domain SH04_RS12560 PF01588 Putative tRNA binding domain SH04_RS12565 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SH04_RS12565 PF01409 tRNA synthetases class II core domain (F) SH04_RS12575 PF00453 Ribosomal protein L20 SH04_RS12580 PF01632 Ribosomal protein L35 SH04_RS12585 PF05198 Translation initiation factor IF-3, N-terminal domain SH04_RS12585 PF00707 Translation initiation factor IF-3, C-terminal domain SH04_RS12590 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SH04_RS12590 PF03129 Anticodon binding domain SH04_RS12590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH04_RS12590 PF02824 TGS domain SH04_RS12605 PF04338 Protein of unknown function, DUF481 SH04_RS12610 PF00294 pfkB family carbohydrate kinase SH04_RS12615 PF11080 Endoribonuclease GhoS SH04_RS12620 PF03881 Fructosamine kinase SH04_RS12625 PF14002 YniB-like protein SH04_RS12630 PF13419 Haloacid dehalogenase-like hydrolase SH04_RS12635 PF04307 LexA-binding, inner membrane-associated putative hydrolase SH04_RS12640 PF00375 Sodium:dicarboxylate symporter family SH04_RS12650 PF10729 Cell division activator CedA SH04_RS12655 PF06628 Catalase-related immune-responsive SH04_RS12655 PF18011 C-terminal domain found in long catalases SH04_RS12655 PF00199 Catalase SH04_RS12660 PF04794 YdjC-like protein SH04_RS12665 PF02056 Family 4 glycosyl hydrolase SH04_RS12665 PF11975 Family 4 glycosyl hydrolase C-terminal domain SH04_RS12670 PF12833 Helix-turn-helix domain SH04_RS12670 PF07883 Cupin domain SH04_RS12675 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SH04_RS12680 PF02378 Phosphotransferase system, EIIC SH04_RS12685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH04_RS12690 PF04355 SmpA / OmlA family SH04_RS12695 PF02540 NAD synthase SH04_RS12710 PF05962 HutD SH04_RS12715 PF07813 LTXXQ motif family protein SH04_RS12720 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family SH04_RS12725 PF04996 Succinylarginine dihydrolase SH04_RS12730 PF00171 Aldehyde dehydrogenase family SH04_RS12735 PF04958 Arginine N-succinyltransferase beta subunit SH04_RS12740 PF00202 Aminotransferase class-III SH04_RS12745 PF03372 Endonuclease/Exonuclease/phosphatase family SH04_RS12750 PF09335 SNARE associated Golgi protein SH04_RS12760 PF09335 SNARE associated Golgi protein SH04_RS12765 PF02627 Carboxymuconolactone decarboxylase family SH04_RS12770 PF13416 Bacterial extracellular solute-binding protein SH04_RS12775 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS12780 PF00005 ABC transporter SH04_RS12785 PF00581 Rhodanese-like domain SH04_RS12790 PF01066 CDP-alcohol phosphatidyltransferase SH04_RS12795 PF00293 NUDIX domain SH04_RS12800 PF07383 Protein of unknown function (DUF1496) SH04_RS12805 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SH04_RS12805 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SH04_RS12810 PF06889 Protein of unknown function (DUF1266) SH04_RS12815 PF01131 DNA topoisomerase SH04_RS12815 PF01751 Toprim domain SH04_RS12820 PF02769 AIR synthase related protein, C-terminal domain SH04_RS12820 PF00586 AIR synthase related protein, N-terminal domain SH04_RS12830 PF00881 Nitroreductase family SH04_RS12840 PF01343 Peptidase family S49 SH04_RS12845 PF00710 Asparaginase, N-terminal SH04_RS12845 PF17763 Glutaminase/Asparaginase C-terminal domain SH04_RS12850 PF00857 Isochorismatase family SH04_RS12855 PF00083 Sugar (and other) transporter SH04_RS12860 PF08220 DeoR-like helix-turn-helix domain SH04_RS12860 PF00455 DeoR C terminal sensor domain SH04_RS12865 PF00248 Aldo/keto reductase family SH04_RS12870 PF00294 pfkB family carbohydrate kinase SH04_RS12875 PF01116 Fructose-bisphosphate aldolase class-II SH04_RS12880 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS12880 PF00107 Zinc-binding dehydrogenase SH04_RS12885 PF00083 Sugar (and other) transporter SH04_RS12890 PF00107 Zinc-binding dehydrogenase SH04_RS12890 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS12895 PF07023 Protein of unknown function (DUF1315) SH04_RS12900 PF01641 SelR domain SH04_RS12905 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH04_RS12905 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH04_RS12910 PF01263 Aldose 1-epimerase SH04_RS12915 PF00248 Aldo/keto reductase family SH04_RS12920 PF06629 MltA-interacting protein MipA SH04_RS12925 PF06798 PrkA serine protein kinase C-terminal domain SH04_RS12925 PF08298 PrkA AAA domain SH04_RS12930 PF04285 Protein of unknown function (DUF444) SH04_RS12935 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS12935 PF17158 Membrane-associated sensor, integral membrane domain SH04_RS12940 PF17155 Gammaproteobacterial periplasmic sensor domain SH04_RS12940 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS12945 PF04073 Aminoacyl-tRNA editing domain SH04_RS12955 PF04284 Protein of unknown function (DUF441) SH04_RS12960 PF12833 Helix-turn-helix domain SH04_RS12960 PF02311 AraC-like ligand binding domain SH04_RS12965 PF07690 Major Facilitator Superfamily SH04_RS12970 PF04343 Protein of unknown function, DUF488 SH04_RS12975 PF03891 Domain of unknown function (DUF333) SH04_RS12980 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS12980 PF13185 GAF domain SH04_RS12990 PF04226 Transglycosylase associated protein SH04_RS12995 PF08956 Domain of unknown function (DUF1869) SH04_RS13000 PF09313 Domain of unknown function (DUF1971) SH04_RS13005 PF01810 LysE type translocator SH04_RS13010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS13010 PF03466 LysR substrate binding domain SH04_RS13015 PF00180 Isocitrate/isopropylmalate dehydrogenase SH04_RS13020 PF02028 BCCT, betaine/carnitine/choline family transporter SH04_RS13025 PF00355 Rieske [2Fe-2S] domain SH04_RS13025 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SH04_RS13030 PF00970 Oxidoreductase FAD-binding domain SH04_RS13030 PF00111 2Fe-2S iron-sulfur cluster binding domain SH04_RS13030 PF00175 Oxidoreductase NAD-binding domain SH04_RS13035 PF00570 HRDC domain SH04_RS13035 PF01612 3'-5' exonuclease SH04_RS13040 PF00501 AMP-binding enzyme SH04_RS13040 PF13193 AMP-binding enzyme C-terminal domain SH04_RS13045 PF03843 Outer membrane lipoprotein Slp family SH04_RS13050 PF00814 Glycoprotease family SH04_RS13055 PF13307 Helicase C-terminal domain SH04_RS13055 PF04851 Type III restriction enzyme, res subunit SH04_RS13060 PF01042 Endoribonuclease L-PSP SH04_RS13065 PF08986 Domain of unknown function (DUF1889) SH04_RS13070 PF03701 Uncharacterised protein family (UPF0181) SH04_RS13075 PF04715 Anthranilate synthase component I, N terminal region SH04_RS13075 PF00425 chorismate binding enzyme SH04_RS13080 PF00293 NUDIX domain SH04_RS13085 PF03315 Serine dehydratase beta chain SH04_RS13085 PF03313 Serine dehydratase alpha chain SH04_RS13090 PF00563 EAL domain SH04_RS13090 PF12792 CSS motif domain associated with EAL SH04_RS13095 PF03471 Transporter associated domain SH04_RS13095 PF03741 Integral membrane protein TerC family SH04_RS13105 PF03610 PTS system fructose IIA component SH04_RS13105 PF03830 PTS system sorbose subfamily IIB component SH04_RS13110 PF03609 PTS system sorbose-specific iic component SH04_RS13115 PF03613 PTS system mannose/fructose/sorbose family IID component SH04_RS13120 PF06173 Protein of unknown function (DUF986) SH04_RS13130 PF02659 Putative manganese efflux pump SH04_RS13135 PF13847 Methyltransferase domain SH04_RS13140 PF00313 'Cold-shock' DNA-binding domain SH04_RS13145 PF10736 Protein of unknown function (DUF2627) SH04_RS13155 PF13974 YebO-like protein SH04_RS13160 PF13998 MgrB protein SH04_RS13165 PF13996 YobH-like protein SH04_RS13170 PF01614 Bacterial transcriptional regulator SH04_RS13170 PF09339 IclR helix-turn-helix domain SH04_RS13175 PF07690 Major Facilitator Superfamily SH04_RS13185 PF11818 C-terminal domain of tail specific protease (DUF3340) SH04_RS13185 PF00595 PDZ domain SH04_RS13185 PF03572 Peptidase family S41 SH04_RS13185 PF17804 Tail specific protease N-terminal domain SH04_RS13190 PF17516 ProQ C-terminal domain SH04_RS13190 PF04352 ProQ/FINO family SH04_RS13195 PF13185 GAF domain SH04_RS13200 PF04403 Paraquat-inducible protein A SH04_RS13205 PF02470 MlaD protein SH04_RS13215 PF07351 Protein of unknown function (DUF1480) SH04_RS13220 PF07358 Protein of unknown function (DUF1482) SH04_RS13225 PF00149 Calcineurin-like phosphoesterase SH04_RS13235 PF10709 Protein of unknown function (DUF2511) SH04_RS13240 PF05425 Copper resistance protein D SH04_RS13245 PF04234 CopC domain SH04_RS13250 PF06440 DNA polymerase III, theta subunit SH04_RS13255 PF00795 Carbon-nitrogen hydrolase SH04_RS13260 PF00929 Exonuclease SH04_RS13265 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain SH04_RS13265 PF00326 Prolyl oligopeptidase family SH04_RS13270 PF04391 Protein of unknown function (DUF533) SH04_RS13280 PF13995 YebF-like protein SH04_RS13285 PF07130 YebG protein SH04_RS13290 PF02222 ATP-grasp domain SH04_RS13295 PF01081 KDPG and KHG aldolase SH04_RS13300 PF00920 Dehydratase family SH04_RS13305 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SH04_RS13305 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SH04_RS13315 PF01418 Helix-turn-helix domain, rpiR family SH04_RS13315 PF01380 SIS domain SH04_RS13320 PF00224 Pyruvate kinase, barrel domain SH04_RS13320 PF02887 Pyruvate kinase, alpha/beta domain SH04_RS13325 PF03279 Bacterial lipid A biosynthesis acyltransferase SH04_RS13330 PF01551 Peptidase family M23 SH04_RS13330 PF08525 Opacity-associated protein A N-terminal motif SH04_RS13330 PF01476 LysM domain SH04_RS13335 PF01297 Zinc-uptake complex component A periplasmic SH04_RS13340 PF00005 ABC transporter SH04_RS13345 PF00950 ABC 3 transport family SH04_RS13350 PF17864 RuvB AAA lid domain SH04_RS13350 PF05496 Holliday junction DNA helicase RuvB P-loop domain SH04_RS13350 PF05491 RuvB C-terminal winged helix domain SH04_RS13355 PF07499 RuvA, C-terminal domain SH04_RS13355 PF01330 RuvA N terminal domain SH04_RS13360 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH04_RS13365 PF02075 Crossover junction endodeoxyribonuclease RuvC SH04_RS13370 PF01709 Transcriptional regulator SH04_RS13375 PF00293 NUDIX domain SH04_RS13380 PF02938 GAD domain SH04_RS13380 PF00152 tRNA synthetases class II (D, K and N) SH04_RS13380 PF01336 OB-fold nucleic acid binding domain SH04_RS13385 PF00857 Isochorismatase family SH04_RS13390 PF01904 Protein of unknown function DUF72 SH04_RS13395 PF01124 MAPEG family SH04_RS13400 PF13649 Methyltransferase domain SH04_RS13405 PF08003 Protein of unknown function (DUF1698) SH04_RS13410 PF00384 Molybdopterin oxidoreductase SH04_RS13410 PF18364 Molybdopterin oxidoreductase N-terminal domain SH04_RS13410 PF01568 Molydopterin dinucleotide binding domain SH04_RS13415 PF03264 NapC/NirT cytochrome c family, N-terminal region SH04_RS13420 PF03932 CutC family SH04_RS13425 PF06185 YecM protein SH04_RS13430 PF00750 tRNA synthetases class I (R) SH04_RS13430 PF03485 Arginyl tRNA synthetase N terminal domain SH04_RS13430 PF05746 DALR anticodon binding domain SH04_RS13435 PF07007 Lysozyme inhibitor LprI SH04_RS13440 PF06366 Flagellar protein FlhE SH04_RS13445 PF00771 FHIPEP family SH04_RS13450 PF01312 FlhB HrpN YscU SpaS Family SH04_RS13455 PF04344 Chemotaxis phosphatase, CheZ SH04_RS13460 PF00072 Response regulator receiver domain SH04_RS13465 PF01339 CheB methylesterase SH04_RS13465 PF00072 Response regulator receiver domain SH04_RS13470 PF03705 CheR methyltransferase, all-alpha domain SH04_RS13470 PF01739 CheR methyltransferase, SAM binding domain SH04_RS13475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH04_RS13475 PF00672 HAMP domain SH04_RS13475 PF02203 Tar ligand binding domain homologue SH04_RS13480 PF02203 Tar ligand binding domain homologue SH04_RS13480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH04_RS13480 PF00672 HAMP domain SH04_RS13485 PF01584 CheW-like domain SH04_RS13490 PF01627 Hpt domain SH04_RS13490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS13490 PF02895 Signal transducing histidine kinase, homodimeric domain SH04_RS13490 PF09078 CheY binding SH04_RS13490 PF01584 CheW-like domain SH04_RS13495 PF13677 Membrane MotB of proton-channel complex MotA/MotB SH04_RS13495 PF00691 OmpA family SH04_RS13500 PF01618 MotA/TolQ/ExbB proton channel family SH04_RS13505 PF05280 Flagellar transcriptional activator (FlhC) SH04_RS13510 PF05247 Flagellar transcriptional activator (FlhD) SH04_RS13515 PF00582 Universal stress protein family SH04_RS13520 PF00982 Glycosyltransferase family 20 SH04_RS13525 PF02358 Trehalose-phosphatase SH04_RS13530 PF02653 Branched-chain amino acid transport system / permease component SH04_RS13535 PF00005 ABC transporter SH04_RS13540 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH04_RS13545 PF00210 Ferritin-like domain SH04_RS13550 PF10964 Protein of unknown function (DUF2766) SH04_RS13560 PF13992 YecR-like lipoprotein SH04_RS13565 PF00210 Ferritin-like domain SH04_RS13570 PF10678 Protein of unknown function (DUF2492) SH04_RS13575 PF03222 Tryptophan/tyrosine permease family SH04_RS13580 PF03695 Uncharacterised protein family (UPF0149) SH04_RS13580 PF02810 SEC-C motif SH04_RS13600 PF01066 CDP-alcohol phosphatidyltransferase SH04_RS13605 PF08459 UvrC Helix-hairpin-helix N-terminal SH04_RS13605 PF01541 GIY-YIG catalytic domain SH04_RS13605 PF02151 UvrB/uvrC motif SH04_RS13610 PF00196 Bacterial regulatory proteins, luxR family SH04_RS13610 PF00072 Response regulator receiver domain SH04_RS13620 PF10769 Protein of unknown function (DUF2594) SH04_RS13625 PF03472 Autoinducer binding domain SH04_RS13625 PF00196 Bacterial regulatory proteins, luxR family SH04_RS13630 PF00005 ABC transporter SH04_RS13635 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS13640 PF00291 Pyridoxal-phosphate dependent enzyme SH04_RS13645 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH04_RS13650 PF02899 Phage integrase, N-terminal SAM-like domain SH04_RS13655 PF04542 Sigma-70 region 2 SH04_RS13655 PF04539 Sigma-70 region 3 SH04_RS13655 PF04545 Sigma-70, region 4 SH04_RS13660 PF00700 Bacterial flagellin C-terminal helical region SH04_RS13660 PF08884 Flagellin D3 domain SH04_RS13660 PF00669 Bacterial flagellin N-terminal helical region SH04_RS13665 PF02465 Flagellar hook-associated protein 2 N-terminus SH04_RS13665 PF07195 Flagellar hook-associated protein 2 C-terminus SH04_RS13670 PF02561 Flagellar protein FliS SH04_RS13675 PF05400 Flagellar protein FliT SH04_RS13680 PF00128 Alpha amylase, catalytic domain SH04_RS13680 PF02806 Alpha amylase, C-terminal all-beta domain SH04_RS13685 PF13987 YedD-like protein SH04_RS13690 PF04143 Sulphur transport SH04_RS13695 PF01206 Sulfurtransferase TusA SH04_RS13700 PF02586 SOS response associated peptidase (SRAP) SH04_RS13705 PF00583 Acetyltransferase (GNAT) family SH04_RS13725 PF02049 Flagellar hook-basal body complex protein FliE SH04_RS13730 PF01514 Secretory protein of YscJ/FliF family SH04_RS13730 PF08345 Flagellar M-ring protein C-terminal SH04_RS13735 PF01706 FliG C-terminal domain SH04_RS13735 PF14841 FliG middle domain SH04_RS13735 PF14842 FliG N-terminal domain SH04_RS13740 PF02108 Flagellar assembly protein FliH SH04_RS13745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH04_RS13745 PF18269 T3SS EscN ATPase C-terminal domain SH04_RS13750 PF02050 Flagellar FliJ protein SH04_RS13755 PF02120 Flagellar hook-length control protein FliK SH04_RS13760 PF03748 Flagellar basal body-associated protein FliL SH04_RS13765 PF02154 Flagellar motor switch protein FliM SH04_RS13765 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SH04_RS13770 PF16973 Flagellar motor switch protein FliN N-terminal SH04_RS13770 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SH04_RS13775 PF04347 Flagellar biosynthesis protein, FliO SH04_RS13780 PF00813 FliP family SH04_RS13785 PF01313 Bacterial export proteins, family 3 SH04_RS13790 PF01311 Bacterial export proteins, family 1 SH04_RS13795 PF00196 Bacterial regulatory proteins, luxR family SH04_RS13800 PF10781 Dextransucrase DSRB SH04_RS13805 PF10733 Protein of unknown function (DUF2525) SH04_RS13815 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS13815 PF17151 Periplasmic sensor domain SH04_RS13820 PF09926 Uncharacterized small protein (DUF2158) SH04_RS13825 PF05661 Protein of unknown function (DUF808) SH04_RS13830 PF00892 EamA-like transporter family SH04_RS13835 PF03852 DNA mismatch endonuclease Vsr SH04_RS13840 PF00145 C-5 cytosine-specific DNA methylase SH04_RS13840 PF18284 DNA methylase N-terminal domain SH04_RS13845 PF01966 HD domain SH04_RS13875 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS13875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS13880 PF00486 Transcriptional regulatory protein, C terminal SH04_RS13880 PF00072 Response regulator receiver domain SH04_RS13885 PF00576 HIUase/Transthyretin family SH04_RS13890 PF00174 Oxidoreductase molybdopterin binding domain SH04_RS13895 PF01794 Ferric reductase like transmembrane component SH04_RS13900 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SH04_RS13905 PF01292 Prokaryotic cytochrome b561 SH04_RS13920 PF06167 Glucose-regulated metallo-peptidase M90 SH04_RS13930 PF11924 Inverse autotransporter, beta-domain SH04_RS13930 PF02369 Bacterial Ig-like domain (group 1) SH04_RS13930 PF09134 Invasin, domain 3 SH04_RS13940 PF07690 Major Facilitator Superfamily SH04_RS13940 PF00083 Sugar (and other) transporter SH04_RS13945 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus SH04_RS13945 PF01048 Phosphorylase superfamily SH04_RS13950 PF01709 Transcriptional regulator SH04_RS13960 PF01554 MatE SH04_RS13970 PF03466 LysR substrate binding domain SH04_RS13970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS13975 PF03466 LysR substrate binding domain SH04_RS13975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS13985 PF17969 L,D-transpeptidase C-terminal domain SH04_RS13985 PF03734 L,D-transpeptidase catalytic domain SH04_RS13990 PF02277 Phosphoribosyltransferase SH04_RS13995 PF02654 Cobalamin-5-phosphate synthase SH04_RS14000 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase SH04_RS14010 PF01609 Transposase DDE domain SH04_RS14010 PF05598 Transposase domain (DUF772) SH04_RS14020 PF13276 HTH-like domain SH04_RS14020 PF00665 Integrase core domain SH04_RS14025 PF01527 Transposase SH04_RS14030 PF07715 TonB-dependent Receptor Plug Domain SH04_RS14030 PF00593 TonB dependent receptor SH04_RS14040 PF03797 Autotransporter beta-domain SH04_RS14040 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH04_RS14040 PF13018 Extended Signal Peptide of Type V secretion system SH04_RS14050 PF04002 RadC-like JAB domain SH04_RS14055 PF06174 Protein of unknown function (DUF987) SH04_RS14060 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH04_RS14065 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH04_RS14080 PF10662 Ethanolamine utilisation - propanediol utilisation SH04_RS14085 PF04363 Protein of unknown function (DUF496) SH04_RS14090 PF04632 Fusaric acid resistance protein family SH04_RS14095 PF06445 GyrI-like small molecule binding domain SH04_RS14100 PF07943 Penicillin-binding protein 5, C-terminal domain SH04_RS14100 PF00768 D-alanyl-D-alanine carboxypeptidase SH04_RS14105 PF08411 Exonuclease C-terminal SH04_RS14105 PF00929 Exonuclease SH04_RS14110 PF01206 Sulfurtransferase TusA SH04_RS14115 PF04143 Sulphur transport SH04_RS14120 PF13520 Amino acid permease SH04_RS14125 PF03466 LysR substrate binding domain SH04_RS14125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS14130 PF01370 NAD dependent epimerase/dehydratase family SH04_RS14135 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SH04_RS14140 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system SH04_RS14145 PF08029 HisG, C-terminal domain SH04_RS14145 PF01634 ATP phosphoribosyltransferase SH04_RS14150 PF00815 Histidinol dehydrogenase SH04_RS14155 PF00155 Aminotransferase class I and II SH04_RS14160 PF08645 Polynucleotide kinase 3 phosphatase SH04_RS14160 PF00475 Imidazoleglycerol-phosphate dehydratase SH04_RS14165 PF00117 Glutamine amidotransferase class-I SH04_RS14170 PF00977 Histidine biosynthesis protein SH04_RS14175 PF00977 Histidine biosynthesis protein SH04_RS14180 PF01502 Phosphoribosyl-AMP cyclohydrolase SH04_RS14180 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SH04_RS14185 PF02706 Chain length determinant protein SH04_RS14190 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SH04_RS14190 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SH04_RS14190 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SH04_RS14195 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SH04_RS14195 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH04_RS14200 PF05598 Transposase domain (DUF772) SH04_RS14200 PF01609 Transposase DDE domain SH04_RS14210 PF00534 Glycosyl transferases group 1 SH04_RS14215 PF00132 Bacterial transferase hexapeptide (six repeats) SH04_RS14230 PF03275 UDP-galactopyranose mutase SH04_RS14235 PF01943 Polysaccharide biosynthesis protein SH04_RS14240 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SH04_RS14245 PF00483 Nucleotidyl transferase SH04_RS14255 PF16363 GDP-mannose 4,6 dehydratase SH04_RS14260 PF00483 Nucleotidyl transferase SH04_RS14270 PF13439 Glycosyltransferase Family 4 SH04_RS14270 PF00534 Glycosyl transferases group 1 SH04_RS14275 PF04230 Polysaccharide pyruvyl transferase SH04_RS14285 PF02397 Bacterial sugar transferase SH04_RS14290 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH04_RS14290 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH04_RS14290 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH04_RS14290 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH04_RS14295 PF01050 Mannose-6-phosphate isomerase SH04_RS14295 PF00483 Nucleotidyl transferase SH04_RS14300 PF00534 Glycosyl transferases group 1 SH04_RS14300 PF13579 Glycosyl transferase 4-like domain SH04_RS14305 PF00293 NUDIX domain SH04_RS14310 PF01370 NAD dependent epimerase/dehydratase family SH04_RS14315 PF16363 GDP-mannose 4,6 dehydratase SH04_RS14320 PF00132 Bacterial transferase hexapeptide (six repeats) SH04_RS14325 PF00535 Glycosyl transferase family 2 SH04_RS14335 PF00534 Glycosyl transferases group 1 SH04_RS14335 PF13439 Glycosyltransferase Family 4 SH04_RS14340 PF00132 Bacterial transferase hexapeptide (six repeats) SH04_RS14345 PF00535 Glycosyl transferase family 2 SH04_RS14350 PF13614 AAA domain SH04_RS14350 PF13807 G-rich domain on putative tyrosine kinase SH04_RS14350 PF02706 Chain length determinant protein SH04_RS14355 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH04_RS14360 PF10531 SLBB domain SH04_RS14360 PF18412 Outer-membrane lipoprotein Wza C-terminal domain SH04_RS14360 PF02563 Polysaccharide biosynthesis/export protein SH04_RS14365 PF00571 CBS domain SH04_RS14365 PF03471 Transporter associated domain SH04_RS14365 PF03741 Integral membrane protein TerC family SH04_RS14370 PF05170 AsmA family SH04_RS14375 PF00692 dUTPase SH04_RS14380 PF00485 Phosphoribulokinase / Uridine kinase family SH04_RS14385 PF13426 PAS domain SH04_RS14385 PF08447 PAS fold SH04_RS14385 PF05231 MASE1 SH04_RS14385 PF00563 EAL domain SH04_RS14385 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS14385 PF08448 PAS fold SH04_RS14390 PF00730 HhH-GPD superfamily base excision DNA repair protein SH04_RS14390 PF06029 AlkA N-terminal domain SH04_RS14400 PF00012 Hsp70 protein SH04_RS14410 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) SH04_RS14420 PF00092 von Willebrand factor type A domain SH04_RS14425 PF13533 Biotin-lipoyl like SH04_RS14430 PF00873 AcrB/AcrD/AcrF family SH04_RS14435 PF00873 AcrB/AcrD/AcrF family SH04_RS14440 PF07690 Major Facilitator Superfamily SH04_RS14445 PF00672 HAMP domain SH04_RS14445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS14445 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS14450 PF00072 Response regulator receiver domain SH04_RS14450 PF00486 Transcriptional regulatory protein, C terminal SH04_RS14455 PF07411 Domain of unknown function (DUF1508) SH04_RS14460 PF16325 Peptidase family U32 C-terminal domain SH04_RS14460 PF01136 Peptidase family U32 SH04_RS14480 PF00781 Diacylglycerol kinase catalytic domain SH04_RS14490 PF01527 Transposase SH04_RS14495 PF00665 Integrase core domain SH04_RS14495 PF13276 HTH-like domain SH04_RS14495 PF13333 Integrase core domain SH04_RS14500 PF08220 DeoR-like helix-turn-helix domain SH04_RS14505 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS14505 PF00107 Zinc-binding dehydrogenase SH04_RS14510 PF03611 PTS system sugar-specific permease component SH04_RS14515 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH04_RS14520 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH04_RS14525 PF08013 Tagatose 6 phosphate kinase SH04_RS14530 PF01116 Fructose-bisphosphate aldolase class-II SH04_RS14535 PF01791 DeoC/LacD family aldolase SH04_RS14540 PF03825 Nucleoside H+ symporter SH04_RS14545 PF03747 ADP-ribosylglycohydrolase SH04_RS14550 PF00294 pfkB family carbohydrate kinase SH04_RS14555 PF07702 UTRA domain SH04_RS14555 PF00392 Bacterial regulatory proteins, gntR family SH04_RS14560 PF01183 Glycosyl hydrolases family 25 SH04_RS14565 PF08543 Phosphomethylpyrimidine kinase SH04_RS14570 PF02110 Hydroxyethylthiazole kinase family SH04_RS14575 PF02583 Metal-sensitive transcriptional repressor SH04_RS14580 PF03824 High-affinity nickel-transport protein SH04_RS14585 PF11776 Nickel/cobalt transporter regulator SH04_RS14590 PF00419 Fimbrial protein SH04_RS14595 PF13954 PapC N-terminal domain SH04_RS14595 PF13953 PapC C-terminal domain SH04_RS14595 PF00577 Outer membrane usher protein SH04_RS14600 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH04_RS14600 PF02753 Pili assembly chaperone PapD, C-terminal domain SH04_RS14605 PF00419 Fimbrial protein SH04_RS14615 PF10836 Protein of unknown function (DUF2574) SH04_RS14620 PF10609 NUBPL iron-transfer P-loop NTPase SH04_RS14625 PF01588 Putative tRNA binding domain SH04_RS14625 PF09334 tRNA synthetases class I (M) SH04_RS14630 PF05406 WGR domain SH04_RS14640 PF13569 Domain of unknown function (DUF4132) SH04_RS14650 PF07728 AAA domain (dynein-related subfamily) SH04_RS14660 PF05762 VWA domain containing CoxE-like protein SH04_RS14665 PF04434 SWIM zinc finger SH04_RS14670 PF06998 Protein of unknown function (DUF1307) SH04_RS14675 PF07308 Protein of unknown function (DUF1456) SH04_RS14680 PF00072 Response regulator receiver domain SH04_RS14680 PF04397 LytTr DNA-binding domain SH04_RS14685 PF07694 5TMR of 5TMR-LYT SH04_RS14685 PF06580 Histidine kinase SH04_RS14690 PF13411 MerR HTH family regulatory protein SH04_RS14700 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS14705 PF00005 ABC transporter SH04_RS14710 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS14715 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH04_RS14720 PF01915 Glycosyl hydrolase family 3 C-terminal domain SH04_RS14720 PF00933 Glycosyl hydrolase family 3 N terminal domain SH04_RS14720 PF14310 Fibronectin type III-like domain SH04_RS14725 PF09330 D-lactate dehydrogenase, membrane binding SH04_RS14725 PF01565 FAD binding domain SH04_RS14730 PF00768 D-alanyl-D-alanine carboxypeptidase SH04_RS14735 PF04893 Yip1 domain SH04_RS14740 PF09335 SNARE associated Golgi protein SH04_RS14760 PF01207 Dihydrouridine synthase (Dus) SH04_RS14765 PF03788 LrgA family SH04_RS14770 PF04172 LrgB-like family SH04_RS14775 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region SH04_RS14775 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SH04_RS14780 PF02698 DUF218 domain SH04_RS14785 PF10808 Protein of unknown function (DUF2542) SH04_RS14790 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH04_RS14790 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH04_RS14795 PF01180 Dihydroorotate dehydrogenase SH04_RS14800 PF02653 Branched-chain amino acid transport system / permease component SH04_RS14805 PF03400 IS1 transposase SH04_RS14815 PF13407 Periplasmic binding protein domain SH04_RS14820 PF00356 Bacterial regulatory proteins, lacI family SH04_RS14830 PF04235 Protein of unknown function (DUF418) SH04_RS14835 PF01227 GTP cyclohydrolase I SH04_RS14845 PF00756 Putative esterase SH04_RS14850 PF07715 TonB-dependent Receptor Plug Domain SH04_RS14850 PF00593 TonB dependent receptor SH04_RS14855 PF00324 Amino acid permease SH04_RS14860 PF03466 LysR substrate binding domain SH04_RS14860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS14865 PF03601 Conserved hypothetical protein 698 SH04_RS14870 PF01261 Xylose isomerase-like TIM barrel SH04_RS14875 PF00294 pfkB family carbohydrate kinase SH04_RS14880 PF01773 Na+ dependent nucleoside transporter N-terminus SH04_RS14880 PF07662 Na+ dependent nucleoside transporter C-terminus SH04_RS14885 PF01156 Inosine-uridine preferring nucleoside hydrolase SH04_RS14890 PF00027 Cyclic nucleotide-binding domain SH04_RS14895 PF01773 Na+ dependent nucleoside transporter N-terminus SH04_RS14895 PF07662 Na+ dependent nucleoside transporter C-terminus SH04_RS14900 PF04227 Indigoidine synthase A like protein SH04_RS14905 PF00294 pfkB family carbohydrate kinase SH04_RS14910 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH04_RS14910 PF02378 Phosphotransferase system, EIIC SH04_RS14915 PF00294 pfkB family carbohydrate kinase SH04_RS14920 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH04_RS14920 PF00381 PTS HPr component phosphorylation site SH04_RS14925 PF07690 Major Facilitator Superfamily SH04_RS14930 PF03692 Putative zinc- or iron-chelating domain SH04_RS14935 PF09285 Elongation factor P, C-terminal SH04_RS14935 PF08207 Elongation factor P (EF-P) KOW-like domain SH04_RS14935 PF01132 Elongation factor P (EF-P) OB domain SH04_RS14940 PF08125 Mannitol dehydrogenase C-terminal domain SH04_RS14940 PF01232 Mannitol dehydrogenase Rossmann domain SH04_RS14945 PF07683 Cobalamin synthesis protein cobW C-terminal domain SH04_RS14945 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH04_RS14950 PF01569 PAP2 superfamily SH04_RS14955 PF00877 NlpC/P60 family SH04_RS14960 PF00563 EAL domain SH04_RS14960 PF12792 CSS motif domain associated with EAL SH04_RS14965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH04_RS14970 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS14975 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS14975 PF12911 N-terminal TM domain of oligopeptide transport permease C SH04_RS14980 PF00005 ABC transporter SH04_RS14980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH04_RS14985 PF13989 YejG-like protein SH04_RS14990 PF07690 Major Facilitator Superfamily SH04_RS14995 PF01479 S4 domain SH04_RS14995 PF00849 RNA pseudouridylate synthase SH04_RS15000 PF00271 Helicase conserved C-terminal domain SH04_RS15000 PF04851 Type III restriction enzyme, res subunit SH04_RS15005 PF01386 Ribosomal L25p family SH04_RS15010 PF04245 37-kD nucleoid-associated bacterial protein SH04_RS15015 PF07208 Protein of unknown function (DUF1414) SH04_RS15020 PF00884 Sulfatase SH04_RS15020 PF11893 Domain of unknown function (DUF3413) SH04_RS15030 PF03797 Autotransporter beta-domain SH04_RS15030 PF03212 Pertactin SH04_RS15030 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH04_RS15035 PF01609 Transposase DDE domain SH04_RS15035 PF05598 Transposase domain (DUF772) SH04_RS15045 PF00196 Bacterial regulatory proteins, luxR family SH04_RS15045 PF00072 Response regulator receiver domain SH04_RS15050 PF03918 Cytochrome C biogenesis protein SH04_RS15055 PF08534 Redoxin SH04_RS15060 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SH04_RS15060 PF01578 Cytochrome C assembly protein SH04_RS15065 PF03100 CcmE SH04_RS15070 PF04995 Heme exporter protein D (CcmD) SH04_RS15075 PF01578 Cytochrome C assembly protein SH04_RS15080 PF03379 CcmB protein SH04_RS15085 PF00005 ABC transporter SH04_RS15090 PF03264 NapC/NirT cytochrome c family, N-terminal region SH04_RS15095 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) SH04_RS15100 PF12801 4Fe-4S binding domain SH04_RS15100 PF13237 4Fe-4S dicluster domain SH04_RS15105 PF12800 4Fe-4S binding domain SH04_RS15105 PF12838 4Fe-4S dicluster domain SH04_RS15110 PF00384 Molybdopterin oxidoreductase SH04_RS15110 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS15110 PF01568 Molydopterin dinucleotide binding domain SH04_RS15115 PF03927 NapD protein SH04_RS15120 PF12800 4Fe-4S binding domain SH04_RS15120 PF00037 4Fe-4S binding domain SH04_RS15120 PF13187 4Fe-4S dicluster domain SH04_RS15130 PF03974 Ecotin SH04_RS15135 PF06039 Malate:quinone oxidoreductase (Mqo) SH04_RS15140 PF00005 ABC transporter SH04_RS15145 PF13532 2OG-Fe(II) oxygenase superfamily SH04_RS15150 PF02805 Metal binding domain of Ada SH04_RS15150 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SH04_RS15150 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH04_RS15150 PF12833 Helix-turn-helix domain SH04_RS15155 PF02424 ApbE family SH04_RS15160 PF00267 Gram-negative porin SH04_RS15175 PF16359 RcsD-ABL domain SH04_RS15175 PF01627 Hpt domain SH04_RS15175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS15180 PF00196 Bacterial regulatory proteins, luxR family SH04_RS15180 PF00072 Response regulator receiver domain SH04_RS15185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS15185 PF00072 Response regulator receiver domain SH04_RS15185 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS15185 PF09456 RcsC Alpha-Beta-Loop (ABL) SH04_RS15190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS15190 PF00989 PAS fold SH04_RS15190 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS15195 PF02954 Bacterial regulatory protein, Fis family SH04_RS15195 PF00072 Response regulator receiver domain SH04_RS15195 PF00158 Sigma-54 interaction domain SH04_RS15200 PF01144 Coenzyme A transferase SH04_RS15205 PF01144 Coenzyme A transferase SH04_RS15210 PF02667 Short chain fatty acid transporter SH04_RS15215 PF02803 Thiolase, C-terminal domain SH04_RS15215 PF00108 Thiolase, N-terminal domain SH04_RS15220 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) SH04_RS15225 PF10062 Predicted secreted protein (DUF2300) SH04_RS15225 PF08486 Stage II sporulation protein SH04_RS15235 PF01835 MG2 domain SH04_RS15235 PF00207 Alpha-2-macroglobulin family SH04_RS15235 PF07703 Alpha-2-macroglobulin bait region domain SH04_RS15240 PF06672 Protein of unknown function (DUF1175) SH04_RS15245 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) SH04_RS15250 PF03989 DNA gyrase C-terminal domain, beta-propeller SH04_RS15250 PF00521 DNA gyrase/topoisomerase IV, subunit A SH04_RS15260 PF12951 Passenger-associated-transport-repeat SH04_RS15260 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat SH04_RS15260 PF03797 Autotransporter beta-domain SH04_RS15270 PF00317 Ribonucleotide reductase, all-alpha domain SH04_RS15270 PF02867 Ribonucleotide reductase, barrel domain SH04_RS15270 PF03477 ATP cone domain SH04_RS15275 PF00268 Ribonucleotide reductase, small chain SH04_RS15280 PF00111 2Fe-2S iron-sulfur cluster binding domain SH04_RS15295 PF03009 Glycerophosphoryl diester phosphodiesterase family SH04_RS15300 PF07690 Major Facilitator Superfamily SH04_RS15305 PF04324 BFD-like [2Fe-2S] binding domain SH04_RS15305 PF01266 FAD dependent oxidoreductase SH04_RS15310 PF00890 FAD binding domain SH04_RS15315 PF02754 Cysteine-rich domain SH04_RS15315 PF13183 4Fe-4S dicluster domain SH04_RS15320 PF04754 Putative transposase, YhgA-like SH04_RS15330 PF03328 HpcH/HpaI aldolase/citrate lyase family SH04_RS15335 PF07690 Major Facilitator Superfamily SH04_RS15345 PF01614 Bacterial transcriptional regulator SH04_RS15345 PF09339 IclR helix-turn-helix domain SH04_RS15350 PF00994 Probable molybdopterin binding domain SH04_RS15355 PF07437 YfaZ precursor SH04_RS15360 PF00293 NUDIX domain SH04_RS15365 PF00300 Histidine phosphatase superfamily (branch 1) SH04_RS15370 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SH04_RS15375 PF00535 Glycosyl transferase family 2 SH04_RS15380 PF02911 Formyl transferase, C-terminal domain SH04_RS15380 PF00551 Formyl transferase SH04_RS15380 PF01370 NAD dependent epimerase/dehydratase family SH04_RS15385 PF01522 Polysaccharide deacetylase SH04_RS15390 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase SH04_RS15395 PF00892 EamA-like transporter family SH04_RS15410 PF13193 AMP-binding enzyme C-terminal domain SH04_RS15410 PF00501 AMP-binding enzyme SH04_RS15415 PF13378 Enolase C-terminal domain-like SH04_RS15420 PF00378 Enoyl-CoA hydratase/isomerase SH04_RS15425 PF12697 Alpha/beta hydrolase family SH04_RS15430 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH04_RS15430 PF16582 Middle domain of thiamine pyrophosphate SH04_RS15430 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH04_RS15435 PF00425 chorismate binding enzyme SH04_RS15440 PF05957 Bacterial protein of unknown function (DUF883) SH04_RS15445 PF13673 Acetyltransferase (GNAT) domain SH04_RS15450 PF12706 Beta-lactamase superfamily domain SH04_RS15455 PF02902 Ulp1 protease family, C-terminal catalytic domain SH04_RS15460 PF00092 von Willebrand factor type A domain SH04_RS15460 PF12450 von Willebrand factor SH04_RS15460 PF12034 Domain of unknown function (DUF3520) SH04_RS15465 PF04389 Peptidase family M28 SH04_RS15470 PF08974 Domain of unknown function (DUF1877) SH04_RS15490 PF00361 Proton-conducting membrane transporter SH04_RS15495 PF00361 Proton-conducting membrane transporter SH04_RS15500 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH04_RS15500 PF00361 Proton-conducting membrane transporter SH04_RS15505 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SH04_RS15510 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SH04_RS15515 PF12838 4Fe-4S dicluster domain SH04_RS15520 PF00146 NADH dehydrogenase SH04_RS15525 PF00384 Molybdopterin oxidoreductase SH04_RS15525 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS15525 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SH04_RS15525 PF01568 Molydopterin dinucleotide binding domain SH04_RS15530 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SH04_RS15530 PF10531 SLBB domain SH04_RS15530 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SH04_RS15540 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH04_RS15540 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH04_RS15545 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH04_RS15550 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SH04_RS15555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS15555 PF03466 LysR substrate binding domain SH04_RS15560 PF00155 Aminotransferase class I and II SH04_RS15570 PF02080 TrkA-C domain SH04_RS15570 PF03600 Citrate transporter SH04_RS15575 PF13419 Haloacid dehalogenase-like hydrolase SH04_RS15580 PF03887 YfbU domain SH04_RS15585 PF04217 Protein of unknown function, DUF412 SH04_RS15595 PF00871 Acetokinase family SH04_RS15600 PF07085 DRTGG domain SH04_RS15600 PF01515 Phosphate acetyl/butaryl transferase SH04_RS15605 PF03606 C4-dicarboxylate anaerobic carrier SH04_RS15610 PF00293 NUDIX domain SH04_RS15615 PF12850 Calcineurin-like phosphoesterase superfamily domain SH04_RS15620 PF14834 Glutathione S-transferase, C-terminal domain SH04_RS15620 PF02798 Glutathione S-transferase, N-terminal domain SH04_RS15625 PF02798 Glutathione S-transferase, N-terminal domain SH04_RS15625 PF00043 Glutathione S-transferase, C-terminal domain SH04_RS15630 PF02152 Dihydroneopterin aldolase SH04_RS15635 PF08338 Domain of unknown function (DUF1731) SH04_RS15635 PF01370 NAD dependent epimerase/dehydratase family SH04_RS15640 PF04754 Putative transposase, YhgA-like SH04_RS15645 PF00005 ABC transporter SH04_RS15650 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS15655 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS15660 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH04_RS15665 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH04_RS15670 PF02441 Flavoprotein SH04_RS15675 PF00156 Phosphoribosyl transferase domain SH04_RS15680 PF02674 Colicin V production protein SH04_RS15685 PF05036 Sporulation related domain SH04_RS15690 PF02875 Mur ligase family, glutamate ligase domain SH04_RS15690 PF08245 Mur ligase middle domain SH04_RS15695 PF17848 Acetyl-coA carboxylase zinc finger domain SH04_RS15695 PF01039 Carboxyl transferase domain SH04_RS15700 PF09335 SNARE associated Golgi protein SH04_RS15705 PF01416 tRNA pseudouridine synthase SH04_RS15710 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH04_RS15710 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH04_RS15715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH04_RS15715 PF11890 Domain of unknown function (DUF3410) SH04_RS15715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH04_RS15725 PF07690 Major Facilitator Superfamily SH04_RS15730 PF02801 Beta-ketoacyl synthase, C-terminal domain SH04_RS15730 PF00109 Beta-ketoacyl synthase, N-terminal domain SH04_RS15735 PF05430 S-adenosyl-L-methionine-dependent methyltransferase SH04_RS15735 PF01266 FAD dependent oxidoreductase SH04_RS15740 PF08891 YfcL protein SH04_RS15745 PF04315 Elongation factor P hydroxylase SH04_RS15750 PF01925 Sulfite exporter TauE/SafE SH04_RS15755 PF03411 Penicillin-insensitive murein endopeptidase SH04_RS15760 PF01264 Chorismate synthase SH04_RS15765 PF05175 Methyltransferase small domain SH04_RS15770 PF01713 Smr domain SH04_RS15775 PF11245 Protein of unknown function (DUF2544) SH04_RS15780 PF00419 Fimbrial protein SH04_RS15785 PF00419 Fimbrial protein SH04_RS15790 PF00419 Fimbrial protein SH04_RS15795 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH04_RS15795 PF02753 Pili assembly chaperone PapD, C-terminal domain SH04_RS15805 PF00419 Fimbrial protein SH04_RS15810 PF00300 Histidine phosphatase superfamily (branch 1) SH04_RS15815 PF00378 Enoyl-CoA hydratase/isomerase SH04_RS15815 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH04_RS15815 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH04_RS15820 PF02803 Thiolase, C-terminal domain SH04_RS15820 PF00108 Thiolase, N-terminal domain SH04_RS15825 PF04175 Protein of unknown function (DUF406) SH04_RS15830 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) SH04_RS15840 PF04333 MlaA lipoprotein SH04_RS15845 PF01226 Formate/nitrite transporter SH04_RS15855 PF13356 Arm DNA-binding domain SH04_RS15855 PF14659 Phage integrase, N-terminal SAM-like domain SH04_RS15855 PF00589 Phage integrase family SH04_RS15860 PF04138 GtrA-like protein SH04_RS15865 PF00535 Glycosyl transferase family 2 SH04_RS15875 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH04_RS15880 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH04_RS15890 PF05869 DNA N-6-adenine-methyltransferase (Dam) SH04_RS15895 PF06069 PerC transcriptional activator SH04_RS15915 PF10065 Uncharacterized conserved protein (DUF2303) SH04_RS15940 PF03466 LysR substrate binding domain SH04_RS15940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS15945 PF02447 GntP family permease SH04_RS15950 PF00291 Pyridoxal-phosphate dependent enzyme SH04_RS15955 PF07690 Major Facilitator Superfamily SH04_RS15960 PF00529 HlyD membrane-fusion protein of T1SS SH04_RS15960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH04_RS15965 PF00196 Bacterial regulatory proteins, luxR family SH04_RS15965 PF00072 Response regulator receiver domain SH04_RS15970 PF01627 Hpt domain SH04_RS15970 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH04_RS15970 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS15970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS15970 PF00072 Response regulator receiver domain SH04_RS15975 PF02515 CoA-transferase family III SH04_RS15980 PF03547 Membrane transport protein SH04_RS15985 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH04_RS15985 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH04_RS15985 PF00205 Thiamine pyrophosphate enzyme, central domain SH04_RS15990 PF02515 CoA-transferase family III SH04_RS15995 PF10938 YfdX protein SH04_RS16010 PF10810 Protein of unknown function (DUF2545) SH04_RS16015 PF03279 Bacterial lipid A biosynthesis acyltransferase SH04_RS16020 PF00155 Aminotransferase class I and II SH04_RS16025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS16025 PF06580 Histidine kinase SH04_RS16025 PF07694 5TMR of 5TMR-LYT SH04_RS16030 PF04397 LytTr DNA-binding domain SH04_RS16030 PF00072 Response regulator receiver domain SH04_RS16035 PF12833 Helix-turn-helix domain SH04_RS16040 PF02896 PEP-utilising enzyme, TIM barrel domain SH04_RS16040 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH04_RS16040 PF05524 PEP-utilising enzyme, N-terminal SH04_RS16040 PF00381 PTS HPr component phosphorylation site SH04_RS16040 PF00391 PEP-utilising enzyme, mobile domain SH04_RS16045 PF05343 M42 glutamyl aminopeptidase SH04_RS16050 PF01321 Creatinase/Prolidase N-terminal domain SH04_RS16050 PF00557 Metallopeptidase family M24 SH04_RS16055 PF02378 Phosphotransferase system, EIIC SH04_RS16060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH04_RS16065 PF02685 Glucokinase SH04_RS16070 PF00654 Voltage gated chloride channel SH04_RS16075 PF10697 Protein of unknown function (DUF2502) SH04_RS16085 PF01566 Natural resistance-associated macrophage protein SH04_RS16090 PF07662 Na+ dependent nucleoside transporter C-terminus SH04_RS16090 PF07670 Nucleoside recognition SH04_RS16090 PF01773 Na+ dependent nucleoside transporter N-terminus SH04_RS16095 PF01609 Transposase DDE domain SH04_RS16100 PF05231 MASE1 SH04_RS16100 PF00563 EAL domain SH04_RS16115 PF07037 Putative transcription regulator (DUF1323) SH04_RS16120 PF07037 Putative transcription regulator (DUF1323) SH04_RS16125 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH04_RS16150 PF03466 LysR substrate binding domain SH04_RS16150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS16160 PF03825 Nucleoside H+ symporter SH04_RS16165 PF01048 Phosphorylase superfamily SH04_RS16170 PF03502 Nucleoside-specific channel-forming protein, Tsx SH04_RS16175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS16175 PF03466 LysR substrate binding domain SH04_RS16180 PF13593 SBF-like CPA transporter family (DUF4137) SH04_RS16185 PF12843 Putative quorum-sensing-regulated virulence factor SH04_RS16190 PF12826 Helix-hairpin-helix motif SH04_RS16190 PF03120 NAD-dependent DNA ligase OB-fold domain SH04_RS16190 PF01653 NAD-dependent DNA ligase adenylation domain SH04_RS16190 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SH04_RS16190 PF00533 BRCA1 C Terminus (BRCT) domain SH04_RS16195 PF04354 ZipA, C-terminal FtsZ-binding domain SH04_RS16205 PF00291 Pyridoxal-phosphate dependent enzyme SH04_RS16210 PF00381 PTS HPr component phosphorylation site SH04_RS16215 PF02896 PEP-utilising enzyme, TIM barrel domain SH04_RS16215 PF00391 PEP-utilising enzyme, mobile domain SH04_RS16215 PF05524 PEP-utilising enzyme, N-terminal SH04_RS16220 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH04_RS16225 PF08543 Phosphomethylpyrimidine kinase SH04_RS16230 PF17263 Family of unknown function (DUF5329) SH04_RS16235 PF05406 WGR domain SH04_RS16240 PF00291 Pyridoxal-phosphate dependent enzyme SH04_RS16245 PF00005 ABC transporter SH04_RS16250 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS16255 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS16270 PF01418 Helix-turn-helix domain, rpiR family SH04_RS16270 PF01380 SIS domain SH04_RS16275 PF01380 SIS domain SH04_RS16280 PF02378 Phosphotransferase system, EIIC SH04_RS16280 PF00367 phosphotransferase system, EIIB SH04_RS16285 PF00144 Beta-lactamase SH04_RS16290 PF04261 Dyp-type peroxidase family SH04_RS16295 PF06572 Protein of unknown function (DUF1131) SH04_RS16300 PF11143 Protein of unknown function (DUF2919) SH04_RS16305 PF00583 Acetyltransferase (GNAT) family SH04_RS16310 PF01520 N-acetylmuramoyl-L-alanine amidase SH04_RS16315 PF01218 Coproporphyrinogen III oxidase SH04_RS16320 PF12833 Helix-turn-helix domain SH04_RS16325 PF00936 BMC domain SH04_RS16325 PF16365 Ethanolamine utilization protein EutK C-terminus SH04_RS16330 PF00936 BMC domain SH04_RS16335 PF05985 Ethanolamine ammonia-lyase light chain (EutC) SH04_RS16340 PF06751 Ethanolamine ammonia lyase large subunit (EutB) SH04_RS16345 PF06277 Ethanolamine utilisation protein EutA SH04_RS16350 PF04346 Ethanolamine utilisation protein, EutH SH04_RS16355 PF00465 Iron-containing alcohol dehydrogenase SH04_RS16365 PF00171 Aldehyde dehydrogenase family SH04_RS16370 PF03319 Ethanolamine utilisation protein EutN/carboxysome SH04_RS16375 PF00936 BMC domain SH04_RS16380 PF01515 Phosphate acetyl/butaryl transferase SH04_RS16385 PF01923 Cobalamin adenosyltransferase SH04_RS16390 PF06249 Ethanolamine utilisation protein EutQ SH04_RS16395 PF10662 Ethanolamine utilisation - propanediol utilisation SH04_RS16400 PF00936 BMC domain SH04_RS16405 PF01515 Phosphate acetyl/butaryl transferase SH04_RS16405 PF00390 Malic enzyme, N-terminal domain SH04_RS16405 PF03949 Malic enzyme, NAD binding domain SH04_RS16410 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH04_RS16415 PF00456 Transketolase, thiamine diphosphate binding domain SH04_RS16415 PF02779 Transketolase, pyrimidine binding domain SH04_RS16415 PF02780 Transketolase, C-terminal domain SH04_RS16420 PF06674 Protein of unknown function (DUF1176) SH04_RS16425 PF00293 NUDIX domain SH04_RS16430 PF13247 4Fe-4S dicluster domain SH04_RS16430 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH04_RS16430 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH04_RS16435 PF00672 HAMP domain SH04_RS16435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS16435 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SH04_RS16435 PF07730 Histidine kinase SH04_RS16440 PF00873 AcrB/AcrD/AcrF family SH04_RS16450 PF03960 ArsC family SH04_RS16455 PF07687 Peptidase dimerisation domain SH04_RS16455 PF01546 Peptidase family M20/M25/M40 SH04_RS16460 PF13980 Uncharacterised protein family (UPF0370) SH04_RS16465 PF02230 Phospholipase/Carboxylesterase SH04_RS16470 PF08351 Domain of unknown function (DUF1726) SH04_RS16470 PF17176 tRNA-binding domain SH04_RS16470 PF05127 Helicase SH04_RS16470 PF13718 GNAT acetyltransferase 2 SH04_RS16475 PF04228 Putative neutral zinc metallopeptidase SH04_RS16480 PF01259 SAICAR synthetase SH04_RS16490 PF06804 NlpB/DapX lipoprotein SH04_RS16495 PF00701 Dihydrodipicolinate synthetase family SH04_RS16500 PF01842 ACT domain SH04_RS16505 PF00578 AhpC/TSA family SH04_RS16510 PF00037 4Fe-4S binding domain SH04_RS16510 PF12798 4Fe-4S binding domain SH04_RS16515 PF00361 Proton-conducting membrane transporter SH04_RS16520 PF00146 NADH dehydrogenase SH04_RS16525 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH04_RS16525 PF00361 Proton-conducting membrane transporter SH04_RS16530 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SH04_RS16535 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH04_RS16535 PF00361 Proton-conducting membrane transporter SH04_RS16540 PF00374 Nickel-dependent hydrogenase SH04_RS16540 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH04_RS16540 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH04_RS16545 PF12838 4Fe-4S dicluster domain SH04_RS16550 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH04_RS16555 PF07450 Formate hydrogenlyase maturation protein HycH SH04_RS16560 PF00158 Sigma-54 interaction domain SH04_RS16560 PF01590 GAF domain SH04_RS16565 PF01226 Formate/nitrite transporter SH04_RS16570 PF01594 AI-2E family transporter SH04_RS16575 PF01435 Peptidase family M48 SH04_RS16580 PF03960 ArsC family SH04_RS16585 PF00308 Bacterial dnaA protein SH04_RS16590 PF00860 Permease family SH04_RS16600 PF02769 AIR synthase related protein, C-terminal domain SH04_RS16600 PF00586 AIR synthase related protein, N-terminal domain SH04_RS16605 PF00551 Formyl transferase SH04_RS16610 PF02503 Polyphosphate kinase middle domain SH04_RS16610 PF13090 Polyphosphate kinase C-terminal domain 2 SH04_RS16610 PF13089 Polyphosphate kinase N-terminal domain SH04_RS16610 PF17941 Polyphosphate kinase C-terminal domain 1 SH04_RS16615 PF02541 Ppx/GppA phosphatase family SH04_RS16620 PF05231 MASE1 SH04_RS16620 PF00563 EAL domain SH04_RS16630 PF11119 Protein of unknown function (DUF2633) SH04_RS16635 PF05433 Glycine zipper 2TM domain SH04_RS16640 PF17358 Family of unknown function (DUF5384) SH04_RS16645 PF02540 NAD synthase SH04_RS16645 PF00958 GMP synthase C terminal domain SH04_RS16645 PF00117 Glutamine amidotransferase class-I SH04_RS16650 PF00571 CBS domain SH04_RS16650 PF00478 IMP dehydrogenase / GMP reductase domain SH04_RS16655 PF13742 OB-fold nucleic acid binding domain SH04_RS16655 PF02601 Exonuclease VII, large subunit SH04_RS16660 PF07191 zinc-ribbons SH04_RS16665 PF01926 50S ribosome-binding GTPase SH04_RS16665 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SH04_RS16670 PF13360 PQQ-like domain SH04_RS16675 PF09976 Tetratricopeptide repeat-like domain SH04_RS16680 PF13393 Histidyl-tRNA synthetase SH04_RS16680 PF03129 Anticodon binding domain SH04_RS16685 PF04551 GcpE protein SH04_RS16690 PF13464 Domain of unknown function (DUF4115) SH04_RS16695 PF04055 Radical SAM superfamily SH04_RS16700 PF00334 Nucleoside diphosphate kinase SH04_RS16705 PF00912 Transglycosylase SH04_RS16705 PF06832 Penicillin-Binding Protein C-terminus Family SH04_RS16705 PF00905 Penicillin binding protein transpeptidase domain SH04_RS16710 PF11974 Bacterial alpha-2-macroglobulin MG3 domain SH04_RS16710 PF00207 Alpha-2-macroglobulin family SH04_RS16710 PF07703 Alpha-2-macroglobulin bait region domain SH04_RS16710 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain SH04_RS16710 PF17962 Bacterial macroglobulin domain 6 SH04_RS16710 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain SH04_RS16710 PF07678 A-macroglobulin TED domain SH04_RS16710 PF01835 MG2 domain SH04_RS16710 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain SH04_RS16715 PF00581 Rhodanese-like domain SH04_RS16720 PF14581 SseB protein C-terminal domain SH04_RS16720 PF07179 SseB protein N-terminal domain SH04_RS16725 PF12404 Peptidase SH04_RS16725 PF00883 Cytosol aminopeptidase family, catalytic domain SH04_RS16730 PF04384 Iron-sulphur cluster assembly SH04_RS16735 PF00111 2Fe-2S iron-sulfur cluster binding domain SH04_RS16740 PF00012 Hsp70 protein SH04_RS16745 PF07743 HSCB C-terminal oligomerisation domain SH04_RS16750 PF01521 Iron-sulphur cluster biosynthesis SH04_RS16755 PF01592 NifU-like N terminal domain SH04_RS16760 PF00266 Aminotransferase class-V SH04_RS16765 PF02082 Transcriptional regulator SH04_RS16770 PF00588 SpoU rRNA Methylase family SH04_RS16775 PF00459 Inositol monophosphatase family SH04_RS16780 PF12146 Serine aminopeptidase, S33 SH04_RS16785 PF00874 PRD domain SH04_RS16790 PF12832 MFS_1 like family SH04_RS16795 PF03466 LysR substrate binding domain SH04_RS16795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS16800 PF00355 Rieske [2Fe-2S] domain SH04_RS16800 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SH04_RS16805 PF00866 Ring hydroxylating beta subunit SH04_RS16810 PF00355 Rieske [2Fe-2S] domain SH04_RS16815 PF00106 short chain dehydrogenase SH04_RS16820 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH04_RS16820 PF14759 Reductase C-terminal SH04_RS16825 PF07681 DoxX SH04_RS16830 PF01263 Aldose 1-epimerase SH04_RS16835 PF00107 Zinc-binding dehydrogenase SH04_RS16835 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS16840 PF02653 Branched-chain amino acid transport system / permease component SH04_RS16845 PF00005 ABC transporter SH04_RS16850 PF13407 Periplasmic binding protein domain SH04_RS16855 PF17128 Domain of unknown function (DUF5107) SH04_RS16855 PF13181 Tetratricopeptide repeat SH04_RS16860 PF00480 ROK family SH04_RS16865 PF00464 Serine hydroxymethyltransferase SH04_RS16870 PF00175 Oxidoreductase NAD-binding domain SH04_RS16870 PF00042 Globin SH04_RS16870 PF00970 Oxidoreductase FAD-binding domain SH04_RS16875 PF00543 Nitrogen regulatory protein P-II SH04_RS16880 PF00072 Response regulator receiver domain SH04_RS16880 PF00158 Sigma-54 interaction domain SH04_RS16885 PF13942 YfhG lipoprotein SH04_RS16890 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS16890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS16895 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal SH04_RS16895 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SH04_RS16895 PF02769 AIR synthase related protein, C-terminal domain SH04_RS16900 PF01464 Transglycosylase SLT domain SH04_RS16900 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH04_RS16905 PF14437 MafB19-like deaminase SH04_RS16915 PF01418 Helix-turn-helix domain, rpiR family SH04_RS16915 PF01380 SIS domain SH04_RS16920 PF12838 4Fe-4S dicluster domain SH04_RS16940 PF01648 4'-phosphopantetheinyl transferase superfamily SH04_RS16945 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SH04_RS16950 PF11967 Recombination protein O N terminal SH04_RS16950 PF02565 Recombination protein O C terminal SH04_RS16955 PF01926 50S ribosome-binding GTPase SH04_RS16955 PF07650 KH domain SH04_RS16960 PF00035 Double-stranded RNA binding motif SH04_RS16960 PF14622 Ribonuclease-III-like SH04_RS16965 PF10502 Signal peptidase, peptidase S26 SH04_RS16970 PF03144 Elongation factor Tu domain 2 SH04_RS16970 PF06421 GTP-binding protein LepA C-terminus SH04_RS16970 PF00679 Elongation factor G C-terminus SH04_RS16970 PF00009 Elongation factor Tu GTP binding domain SH04_RS16980 PF17188 MucB/RseB C-terminal domain SH04_RS16980 PF03888 MucB/RseB N-terminal domain SH04_RS16985 PF03873 Anti sigma-E protein RseA, C-terminal domain SH04_RS16985 PF03872 Anti sigma-E protein RseA, N-terminal domain SH04_RS16990 PF04542 Sigma-70 region 2 SH04_RS16990 PF08281 Sigma-70, region 4 SH04_RS17000 PF02910 Fumarate reductase flavoprotein C-term SH04_RS17000 PF00890 FAD binding domain SH04_RS17005 PF05175 Methyltransferase small domain SH04_RS17010 PF00270 DEAD/DEAH box helicase SH04_RS17010 PF00271 Helicase conserved C-terminal domain SH04_RS17020 PF03466 LysR substrate binding domain SH04_RS17020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS17025 PF01810 LysE type translocator SH04_RS17030 PF01228 Glycine radical SH04_RS17035 PF03167 Uracil DNA glycosylase superfamily SH04_RS17040 PF00588 SpoU rRNA Methylase family SH04_RS17040 PF08032 RNA 2'-O ribose methyltransferase substrate binding SH04_RS17050 PF00085 Thioredoxin SH04_RS17055 PF03942 DTW domain SH04_RS17060 PF13607 Succinyl-CoA ligase like flavodoxin domain SH04_RS17060 PF00583 Acetyltransferase (GNAT) family SH04_RS17060 PF13380 CoA binding domain SH04_RS17065 PF13091 PLD-like domain SH04_RS17070 PF10043 Predicted periplasmic lipoprotein (DUF2279) SH04_RS17075 PF00083 Sugar (and other) transporter SH04_RS17105 PF07724 AAA domain (Cdc48 subfamily) SH04_RS17105 PF00004 ATPase family associated with various cellular activities (AAA) SH04_RS17105 PF02861 Clp amino terminal domain, pathogenicity island component SH04_RS17105 PF17871 AAA lid domain SH04_RS17105 PF10431 C-terminal, D2-small domain, of ClpB protein SH04_RS17110 PF02578 Multi-copper polyphenol oxidoreductase laccase SH04_RS17115 PF01479 S4 domain SH04_RS17115 PF00849 RNA pseudouridylate synthase SH04_RS17120 PF13525 Outer membrane lipoprotein SH04_RS17130 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SH04_RS17135 PF01817 Chorismate mutase type II SH04_RS17135 PF00800 Prephenate dehydratase SH04_RS17140 PF01817 Chorismate mutase type II SH04_RS17140 PF02153 Prephenate dehydrogenase SH04_RS17145 PF00793 DAHP synthetase I family SH04_RS17150 PF10973 Protein of unknown function (DUF2799) SH04_RS17155 PF13689 YfiR/HmsC-like SH04_RS17160 PF17152 Periplasmic sensor domain SH04_RS17160 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS17165 PF00691 OmpA family SH04_RS17170 PF01245 Ribosomal protein L19 SH04_RS17175 PF01746 tRNA (Guanine-1)-methyltransferase SH04_RS17180 PF01782 RimM N-terminal domain SH04_RS17180 PF05239 PRC-barrel domain SH04_RS17185 PF00886 Ribosomal protein S16 SH04_RS17190 PF00448 SRP54-type protein, GTPase domain SH04_RS17190 PF02978 Signal peptide binding domain SH04_RS17190 PF02881 SRP54-type protein, helical bundle domain SH04_RS17195 PF01578 Cytochrome C assembly protein SH04_RS17200 PF01595 Cyclin M transmembrane N-terminal domain SH04_RS17200 PF03471 Transporter associated domain SH04_RS17200 PF00571 CBS domain SH04_RS17205 PF01025 GrpE SH04_RS17215 PF01513 ATP-NAD kinase SH04_RS17220 PF02463 RecF/RecN/SMC N terminal domain SH04_RS17225 PF04355 SmpA / OmlA family SH04_RS17230 PF03658 RnfH family Ubiquitin SH04_RS17235 PF03364 Polyketide cyclase / dehydrase and lipid transport SH04_RS17240 PF01668 SmpB protein SH04_RS17245 PF13356 Arm DNA-binding domain SH04_RS17245 PF00589 Phage integrase family SH04_RS17255 PF05930 Prophage CP4-57 regulatory protein (AlpA) SH04_RS17260 PF13148 Protein of unknown function (DUF3987) SH04_RS17270 PF00271 Helicase conserved C-terminal domain SH04_RS17275 PF08878 Domain of unknown function (DUF1837) SH04_RS17275 PF14130 Domain of unknown function (DUF4297) SH04_RS17280 PF07510 Protein of unknown function (DUF1524) SH04_RS17285 PF15935 RNase LS, bacterial toxin SH04_RS17290 PF15933 Antitoxin to bacterial toxin RNase LS or RnlA SH04_RS17295 PF01926 50S ribosome-binding GTPase SH04_RS17300 PF06067 Domain of unknown function (DUF932) SH04_RS17305 PF13280 WYL domain SH04_RS17305 PF08220 DeoR-like helix-turn-helix domain SH04_RS17340 PF03230 Antirestriction protein SH04_RS17345 PF04002 RadC-like JAB domain SH04_RS17350 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH04_RS17355 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH04_RS17360 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH04_RS17360 PF03212 Pertactin SH04_RS17360 PF03797 Autotransporter beta-domain SH04_RS17375 PF17621 Family of unknown function (DUF5508) SH04_RS17380 PF17612 Family of unknown function (DUF5507) SH04_RS17395 PF00128 Alpha amylase, catalytic domain SH04_RS17400 PF00128 Alpha amylase, catalytic domain SH04_RS17405 PF00128 Alpha amylase, catalytic domain SH04_RS17410 PF08943 CsiD SH04_RS17415 PF01266 FAD dependent oxidoreductase SH04_RS17420 PF00171 Aldehyde dehydrogenase family SH04_RS17425 PF00202 Aminotransferase class-III SH04_RS17430 PF00324 Amino acid permease SH04_RS17435 PF07729 FCD domain SH04_RS17435 PF00392 Bacterial regulatory proteins, gntR family SH04_RS17440 PF04972 BON domain SH04_RS17440 PF01476 LysM domain SH04_RS17445 PF01679 Proteolipid membrane potential modulator SH04_RS17450 PF01022 Bacterial regulatory protein, arsR family SH04_RS17455 PF11127 Protein of unknown function (DUF2892) SH04_RS17455 PF00581 Rhodanese-like domain SH04_RS17460 PF00816 H-NS histone family SH04_RS17465 PF06610 L-alanine exporter SH04_RS17470 PF09400 Protein of unknown function (DUF2002) SH04_RS17475 PF05957 Bacterial protein of unknown function (DUF883) SH04_RS17480 PF00462 Glutaredoxin SH04_RS17485 PF07972 NrdI Flavodoxin like SH04_RS17490 PF00317 Ribonucleotide reductase, all-alpha domain SH04_RS17490 PF02867 Ribonucleotide reductase, barrel domain SH04_RS17490 PF08343 Ribonucleotide reductase N-terminal SH04_RS17495 PF00268 Ribonucleotide reductase, small chain SH04_RS17500 PF00571 CBS domain SH04_RS17500 PF00005 ABC transporter SH04_RS17505 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS17510 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH04_RS17520 PF03591 AzlC protein SH04_RS17525 PF05437 Branched-chain amino acid transport protein (AzlD) SH04_RS17530 PF01047 MarR family SH04_RS17535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH04_RS17535 PF00529 HlyD membrane-fusion protein of T1SS SH04_RS17540 PF07690 Major Facilitator Superfamily SH04_RS17545 PF02664 S-Ribosylhomocysteinase (LuxS) SH04_RS17550 PF04262 Glutamate-cysteine ligase SH04_RS17555 PF09335 SNARE associated Golgi protein SH04_RS17560 PF13419 Haloacid dehalogenase-like hydrolase SH04_RS17595 PF02599 Global regulator protein family SH04_RS17600 PF02272 DHHA1 domain SH04_RS17600 PF01411 tRNA synthetases class II (A) SH04_RS17600 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SH04_RS17610 PF02631 RecX family SH04_RS17625 PF00302 Chloramphenicol acetyltransferase SH04_RS17630 PF02464 Competence-damaged protein SH04_RS17635 PF13406 Transglycosylase SLT domain SH04_RS17640 PF03608 PTS system enzyme II sorbitol-specific factor SH04_RS17645 PF07663 Sorbitol phosphotransferase enzyme II C-terminus SH04_RS17645 PF03612 Sorbitol phosphotransferase enzyme II N-terminus SH04_RS17650 PF03829 PTS system glucitol/sorbitol-specific IIA component SH04_RS17655 PF00106 short chain dehydrogenase SH04_RS17660 PF06923 Glucitol operon activator protein (GutM) SH04_RS17665 PF08220 DeoR-like helix-turn-helix domain SH04_RS17665 PF00455 DeoR C terminal sensor domain SH04_RS17670 PF00571 CBS domain SH04_RS17670 PF01380 SIS domain SH04_RS17675 PF01590 GAF domain SH04_RS17675 PF00158 Sigma-54 interaction domain SH04_RS17680 PF00258 Flavodoxin SH04_RS17680 PF00301 Rubredoxin SH04_RS17680 PF00753 Metallo-beta-lactamase superfamily SH04_RS17685 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH04_RS17685 PF18113 Rubredoxin binding C-terminal domain SH04_RS17690 PF00708 Acylphosphatase SH04_RS17690 PF07503 HypF finger SH04_RS17690 PF01300 Telomere recombination SH04_RS17690 PF17788 HypF Kae1-like domain SH04_RS17695 PF13247 4Fe-4S dicluster domain SH04_RS17695 PF12800 4Fe-4S binding domain SH04_RS17700 PF00356 Bacterial regulatory proteins, lacI family SH04_RS17705 PF02378 Phosphotransferase system, EIIC SH04_RS17705 PF00367 phosphotransferase system, EIIB SH04_RS17710 PF00232 Glycosyl hydrolase family 1 SH04_RS17715 PF01750 Hydrogenase maturation protease SH04_RS17720 PF07450 Formate hydrogenlyase maturation protein HycH SH04_RS17725 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH04_RS17730 PF12838 4Fe-4S dicluster domain SH04_RS17735 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH04_RS17735 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH04_RS17735 PF00374 Nickel-dependent hydrogenase SH04_RS17740 PF00146 NADH dehydrogenase SH04_RS17745 PF00361 Proton-conducting membrane transporter SH04_RS17750 PF13247 4Fe-4S dicluster domain SH04_RS17760 PF11046 Transcriptional repressor of hyc and hyp operons SH04_RS17765 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SH04_RS17770 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH04_RS17775 PF01455 HupF/HypC family SH04_RS17780 PF01924 Hydrogenase formation hypA family SH04_RS17785 PF00586 AIR synthase related protein, N-terminal domain SH04_RS17785 PF02769 AIR synthase related protein, C-terminal domain SH04_RS17790 PF00158 Sigma-54 interaction domain SH04_RS17790 PF01590 GAF domain SH04_RS17795 PF11756 Nitrous oxide-stimulated promoter SH04_RS17800 PF05192 MutS domain III SH04_RS17800 PF01624 MutS domain I SH04_RS17800 PF00488 MutS domain V SH04_RS17800 PF05190 MutS family domain IV SH04_RS17800 PF05188 MutS domain II SH04_RS17805 PF00149 Calcineurin-like phosphoesterase SH04_RS17810 PF08220 DeoR-like helix-turn-helix domain SH04_RS17810 PF00455 DeoR C terminal sensor domain SH04_RS17815 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH04_RS17815 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH04_RS17820 PF07005 Sugar-binding N-terminal domain SH04_RS17820 PF17042 Nucleotide-binding C-terminal domain SH04_RS17825 PF00596 Class II Aldolase and Adducin N-terminal domain SH04_RS17830 PF01261 Xylose isomerase-like TIM barrel SH04_RS17835 PF02447 GntP family permease SH04_RS17840 PF04542 Sigma-70 region 2 SH04_RS17840 PF00140 Sigma-70 factor, region 1.2 SH04_RS17840 PF04539 Sigma-70 region 3 SH04_RS17840 PF04545 Sigma-70, region 4 SH04_RS17845 PF01476 LysM domain SH04_RS17845 PF01551 Peptidase family M23 SH04_RS17855 PF01975 Survival protein SurE SH04_RS17860 PF01142 tRNA pseudouridine synthase D (TruD) SH04_RS17865 PF02542 YgbB family SH04_RS17870 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SH04_RS17875 PF04977 Septum formation initiator SH04_RS17880 PF12084 Protein of unknown function (DUF3561) SH04_RS17890 PF00009 Elongation factor Tu GTP binding domain SH04_RS17895 PF01507 Phosphoadenosine phosphosulfate reductase family SH04_RS17900 PF04389 Peptidase family M28 SH04_RS17905 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) SH04_RS17910 PF01867 CRISPR associated protein Cas1 SH04_RS17915 PF08798 CRISPR associated protein SH04_RS17920 PF09704 CRISPR-associated protein (Cas_Cas5) SH04_RS17925 PF09344 CT1975-like protein SH04_RS17930 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) SH04_RS17935 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) SH04_RS17940 PF18019 HD domain SH04_RS17940 PF00270 DEAD/DEAH box helicase SH04_RS17940 PF00271 Helicase conserved C-terminal domain SH04_RS17945 PF01507 Phosphoadenosine phosphosulfate reductase family SH04_RS17950 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SH04_RS17950 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SH04_RS17955 PF00258 Flavodoxin SH04_RS17955 PF00667 FAD binding domain SH04_RS17955 PF00175 Oxidoreductase NAD-binding domain SH04_RS17960 PF01242 6-pyruvoyl tetrahydropterin synthase SH04_RS17965 PF01266 FAD dependent oxidoreductase SH04_RS17975 PF04309 Glycerol-3-phosphate responsive antiterminator SH04_RS17980 PF00766 Electron transfer flavoprotein FAD-binding domain SH04_RS17980 PF01012 Electron transfer flavoprotein domain SH04_RS17985 PF01012 Electron transfer flavoprotein domain SH04_RS17990 PF00083 Sugar (and other) transporter SH04_RS17995 PF02913 FAD linked oxidases, C-terminal domain SH04_RS17995 PF01565 FAD binding domain SH04_RS18005 PF07690 Major Facilitator Superfamily SH04_RS18010 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH04_RS18010 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH04_RS18015 PF04055 Radical SAM superfamily SH04_RS18025 PF04536 TPM domain SH04_RS18030 PF00113 Enolase, C-terminal TIM barrel domain SH04_RS18030 PF03952 Enolase, N-terminal domain SH04_RS18035 PF06418 CTP synthase N-terminus SH04_RS18035 PF00117 Glutamine amidotransferase class-I SH04_RS18040 PF03819 MazG nucleotide pyrophosphohydrolase domain SH04_RS18045 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SH04_RS18050 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SH04_RS18055 PF02824 TGS domain SH04_RS18055 PF04607 Region found in RelA / SpoT proteins SH04_RS18055 PF13291 ACT domain SH04_RS18060 PF05958 tRNA (Uracil-5-)-methyltransferase SH04_RS18060 PF01938 TRAM domain SH04_RS18065 PF01627 Hpt domain SH04_RS18065 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SH04_RS18065 PF00672 HAMP domain SH04_RS18065 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS18065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS18065 PF00072 Response regulator receiver domain SH04_RS18070 PF13378 Enolase C-terminal domain-like SH04_RS18075 PF13378 Enolase C-terminal domain-like SH04_RS18075 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH04_RS18080 PF07690 Major Facilitator Superfamily SH04_RS18085 PF00258 Flavodoxin SH04_RS18090 PF00849 RNA pseudouridylate synthase SH04_RS18095 PF04287 tRNA pseudouridine synthase C SH04_RS18105 PF07348 Syd protein (SUKH-2) SH04_RS18110 PF14489 QueF-like protein SH04_RS18110 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term SH04_RS18115 PF03641 Possible lysine decarboxylase SH04_RS18115 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases SH04_RS18115 PF11892 Domain of unknown function (DUF3412) SH04_RS18125 PF03315 Serine dehydratase beta chain SH04_RS18125 PF03313 Serine dehydratase alpha chain SH04_RS18130 PF01367 5'-3' exonuclease, C-terminal SAM fold SH04_RS18130 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SH04_RS18135 PF00465 Iron-containing alcohol dehydrogenase SH04_RS18140 PF00596 Class II Aldolase and Adducin N-terminal domain SH04_RS18145 PF07690 Major Facilitator Superfamily SH04_RS18150 PF07882 L-fucose isomerase, second N-terminal domain SH04_RS18150 PF07881 L-fucose isomerase, first N-terminal domain SH04_RS18150 PF02952 L-fucose isomerase, C-terminal domain SH04_RS18155 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH04_RS18155 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH04_RS18160 PF05025 RbsD / FucU transport protein family SH04_RS18165 PF00455 DeoR C terminal sensor domain SH04_RS18165 PF08220 DeoR-like helix-turn-helix domain SH04_RS18170 PF18125 RlmM ferredoxin-like domain SH04_RS18170 PF01728 FtsJ-like methyltransferase SH04_RS18175 PF04241 Protein of unknown function (DUF423) SH04_RS18180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS18180 PF03466 LysR substrate binding domain SH04_RS18185 PF06004 Bacterial protein of unknown function (DUF903) SH04_RS18190 PF00266 Aminotransferase class-V SH04_RS18195 PF02657 Fe-S metabolism associated domain SH04_RS18200 PF00899 ThiF family SH04_RS18205 PF06725 3D domain SH04_RS18205 PF03562 MltA specific insert domain SH04_RS18225 PF11741 AMIN domain SH04_RS18225 PF01520 N-acetylmuramoyl-L-alanine amidase SH04_RS18230 PF00696 Amino acid kinase family SH04_RS18230 PF00583 Acetyltransferase (GNAT) family SH04_RS18240 PF00580 UvrD/REP helicase N-terminal domain SH04_RS18240 PF12705 PD-(D/E)XK nuclease superfamily SH04_RS18240 PF13361 UvrD-like helicase C-terminal domain SH04_RS18245 PF00675 Insulinase (Peptidase family M16) SH04_RS18245 PF05193 Peptidase M16 inactive domain SH04_RS18245 PF16187 Middle or third domain of peptidase_M16 SH04_RS18250 PF17946 RecC C-terminal domain SH04_RS18255 PF12528 Type II secretion prepilin peptidase dependent protein C SH04_RS18255 PF07963 Prokaryotic N-terminal methylation motif SH04_RS18260 PF10713 Protein of unknown function (DUF2509) SH04_RS18265 PF07963 Prokaryotic N-terminal methylation motif SH04_RS18270 PF07963 Prokaryotic N-terminal methylation motif SH04_RS18275 PF00303 Thymidylate synthase SH04_RS18280 PF01790 Prolipoprotein diacylglyceryl transferase SH04_RS18285 PF05524 PEP-utilising enzyme, N-terminal SH04_RS18285 PF01590 GAF domain SH04_RS18285 PF02896 PEP-utilising enzyme, TIM barrel domain SH04_RS18285 PF00391 PEP-utilising enzyme, mobile domain SH04_RS18290 PF00293 NUDIX domain SH04_RS18305 PF02976 DNA mismatch repair enzyme MutH SH04_RS18310 PF03741 Integral membrane protein TerC family SH04_RS18315 PF06004 Bacterial protein of unknown function (DUF903) SH04_RS18320 PF00248 Aldo/keto reductase family SH04_RS18325 PF07690 Major Facilitator Superfamily SH04_RS18330 PF00501 AMP-binding enzyme SH04_RS18330 PF01553 Acyltransferase SH04_RS18335 PF00356 Bacterial regulatory proteins, lacI family SH04_RS18340 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SH04_RS18340 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SH04_RS18345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS18345 PF03466 LysR substrate binding domain SH04_RS18350 PF01177 Asp/Glu/Hydantoin racemase SH04_RS18355 PF00083 Sugar (and other) transporter SH04_RS18365 PF04962 KduI/IolB family SH04_RS18370 PF02803 Thiolase, C-terminal domain SH04_RS18370 PF00108 Thiolase, N-terminal domain SH04_RS18375 PF03222 Tryptophan/tyrosine permease family SH04_RS18380 PF00196 Bacterial regulatory proteins, luxR family SH04_RS18385 PF00486 Transcriptional regulatory protein, C terminal SH04_RS18405 PF07720 Tetratricopeptide repeat SH04_RS18410 PF00486 Transcriptional regulatory protein, C terminal SH04_RS18420 PF01464 Transglycosylase SLT domain SH04_RS18425 PF00072 Response regulator receiver domain SH04_RS18425 PF00196 Bacterial regulatory proteins, luxR family SH04_RS18430 PF00072 Response regulator receiver domain SH04_RS18430 PF00196 Bacterial regulatory proteins, luxR family SH04_RS18445 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) SH04_RS18450 PF13276 HTH-like domain SH04_RS18450 PF00665 Integrase core domain SH04_RS18455 PF01527 Transposase SH04_RS18475 PF01476 LysM domain SH04_RS18475 PF01551 Peptidase family M23 SH04_RS18480 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH04_RS18480 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH04_RS18485 PF03450 CO dehydrogenase flavoprotein C-terminal domain SH04_RS18485 PF00941 FAD binding domain in molybdopterin dehydrogenase SH04_RS18490 PF00111 2Fe-2S iron-sulfur cluster binding domain SH04_RS18490 PF01799 [2Fe-2S] binding domain SH04_RS18495 PF00158 Sigma-54 interaction domain SH04_RS18495 PF02954 Bacterial regulatory protein, Fis family SH04_RS18495 PF13188 PAS domain SH04_RS18500 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH04_RS18500 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH04_RS18505 PF00291 Pyridoxal-phosphate dependent enzyme SH04_RS18510 PF01546 Peptidase family M20/M25/M40 SH04_RS18510 PF07687 Peptidase dimerisation domain SH04_RS18515 PF01979 Amidohydrolase family SH04_RS18520 PF00696 Amino acid kinase family SH04_RS18525 PF13478 XdhC Rossmann domain SH04_RS18525 PF02625 XdhC and CoxI family SH04_RS18535 PF12804 MobA-like NTP transferase domain SH04_RS18540 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH04_RS18540 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH04_RS18545 PF01979 Amidohydrolase family SH04_RS18550 PF00941 FAD binding domain in molybdopterin dehydrogenase SH04_RS18555 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH04_RS18555 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH04_RS18555 PF01799 [2Fe-2S] binding domain SH04_RS18560 PF00860 Permease family SH04_RS18565 PF01979 Amidohydrolase family SH04_RS18570 PF00860 Permease family SH04_RS18575 PF13247 4Fe-4S dicluster domain SH04_RS18580 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH04_RS18580 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH04_RS18580 PF13247 4Fe-4S dicluster domain SH04_RS18590 PF00860 Permease family SH04_RS18600 PF00293 NUDIX domain SH04_RS18605 PF01336 OB-fold nucleic acid binding domain SH04_RS18605 PF00152 tRNA synthetases class II (D, K and N) SH04_RS18610 PF00472 RF-1 domain SH04_RS18610 PF03462 PCRF domain SH04_RS18615 PF02272 DHHA1 domain SH04_RS18615 PF01368 DHH family SH04_RS18615 PF17768 RecJ OB domain SH04_RS18620 PF13098 Thioredoxin-like domain SH04_RS18620 PF10411 Disulfide bond isomerase protein N-terminus SH04_RS18625 PF02899 Phage integrase, N-terminal SAM-like domain SH04_RS18625 PF00589 Phage integrase family SH04_RS18630 PF00258 Flavodoxin SH04_RS18635 PF07254 Membrane-bound toxin component of toxin-antitoxin system SH04_RS18640 PF03937 Flavinator of succinate dehydrogenase SH04_RS18645 PF01571 Aminomethyltransferase folate-binding domain SH04_RS18650 PF03006 Haemolysin-III related SH04_RS18655 PF04266 ASCH domain SH04_RS18660 PF00232 Glycosyl hydrolase family 1 SH04_RS18670 PF02347 Glycine cleavage system P-protein SH04_RS18675 PF01597 Glycine cleavage H-protein SH04_RS18680 PF08669 Glycine cleavage T-protein C-terminal barrel domain SH04_RS18680 PF01571 Aminomethyltransferase folate-binding domain SH04_RS18685 PF01494 FAD binding domain SH04_RS18690 PF01494 FAD binding domain SH04_RS18695 PF00557 Metallopeptidase family M24 SH04_RS18695 PF05195 Aminopeptidase P, N-terminal domain SH04_RS18700 PF03695 Uncharacterised protein family (UPF0149) SH04_RS18705 PF05164 Cell division protein ZapA SH04_RS18710 PF01812 5-formyltetrahydrofolate cyclo-ligase family SH04_RS18715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH04_RS18715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH04_RS18715 PF01842 ACT domain SH04_RS18720 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SH04_RS18725 PF03466 LysR substrate binding domain SH04_RS18730 PF03466 LysR substrate binding domain SH04_RS18730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS18735 PF01642 Methylmalonyl-CoA mutase SH04_RS18735 PF02310 B12 binding domain SH04_RS18745 PF00378 Enoyl-CoA hydratase/isomerase SH04_RS18750 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain SH04_RS18750 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain SH04_RS18755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS18755 PF03466 LysR substrate binding domain SH04_RS18760 PF04402 Protein of unknown function (DUF541) SH04_RS18765 PF01810 LysE type translocator SH04_RS18770 PF05552 Conserved TM helix SH04_RS18770 PF00924 Mechanosensitive ion channel SH04_RS18775 PF01116 Fructose-bisphosphate aldolase class-II SH04_RS18780 PF00162 Phosphoglycerate kinase SH04_RS18785 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH04_RS18785 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH04_RS18795 PF05068 Mannitol repressor SH04_RS18800 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded SH04_RS18805 PF00107 Zinc-binding dehydrogenase SH04_RS18805 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS18810 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH04_RS18810 PF02378 Phosphotransferase system, EIIC SH04_RS18815 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH04_RS18820 PF02779 Transketolase, pyrimidine binding domain SH04_RS18820 PF02780 Transketolase, C-terminal domain SH04_RS18820 PF00456 Transketolase, thiamine diphosphate binding domain SH04_RS18825 PF01435 Peptidase family M48 SH04_RS18830 PF00491 Arginase family SH04_RS18835 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SH04_RS18835 PF17944 Arginine decarboxylase C-terminal helical extension SH04_RS18835 PF17810 Arginine decarboxylase helical bundle domain SH04_RS18840 PF11036 Virulence promoting factor SH04_RS18845 PF17430 Uncharacterized YqgC-like SH04_RS18855 PF02772 S-adenosylmethionine synthetase, central domain SH04_RS18855 PF00438 S-adenosylmethionine synthetase, N-terminal domain SH04_RS18855 PF02773 S-adenosylmethionine synthetase, C-terminal domain SH04_RS18865 PF17283 SprT-like zinc ribbon domain SH04_RS18865 PF10263 SprT-like family SH04_RS18870 PF04231 Endonuclease I SH04_RS18875 PF04452 RNA methyltransferase SH04_RS18880 PF02951 Prokaryotic glutathione synthetase, N-terminal domain SH04_RS18880 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain SH04_RS18885 PF02622 Uncharacterized ACR, COG1678 SH04_RS18890 PF03652 Holliday junction resolvase SH04_RS18895 PF00437 Type II/IV secretion system protein SH04_RS18900 PF01168 Alanine racemase, N-terminal domain SH04_RS18905 PF02325 YGGT family SH04_RS18910 PF02594 Uncharacterised ACR, YggU family COG1872 SH04_RS18915 PF01725 Ham1 family SH04_RS18920 PF06969 HemN C-terminal domain SH04_RS18920 PF04055 Radical SAM superfamily SH04_RS18925 PF06717 Protein of unknown function (DUF1202) SH04_RS18930 PF17763 Glutaminase/Asparaginase C-terminal domain SH04_RS18930 PF00710 Asparaginase, N-terminal SH04_RS18935 PF11101 Protein of unknown function (DUF2884) SH04_RS18945 PF04320 Protein with unknown function (DUF469) SH04_RS18950 PF02390 Putative methyltransferase SH04_RS18955 PF00730 HhH-GPD superfamily base excision DNA repair protein SH04_RS18955 PF10576 Iron-sulfur binding domain of endonuclease III SH04_RS18955 PF14815 NUDIX domain SH04_RS18955 PF00633 Helix-hairpin-helix motif SH04_RS18960 PF04362 Bacterial Fe(2+) trafficking SH04_RS18965 PF01464 Transglycosylase SLT domain SH04_RS18965 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain SH04_RS18970 PF03825 Nucleoside H+ symporter SH04_RS18975 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH04_RS18975 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH04_RS18975 PF01276 Orn/Lys/Arg decarboxylase, major domain SH04_RS18980 PF04474 Protein of unknown function (DUF554) SH04_RS18990 PF04612 Type II secretion system (T2SS), protein M SH04_RS18995 PF12693 GspL periplasmic domain SH04_RS19000 PF11356 Type II secretion system protein C SH04_RS19005 PF16549 Type II secretion system (T2SS) pilotin, S protein SH04_RS19010 PF01478 Type IV leader peptidase family SH04_RS19010 PF06750 Bacterial Peptidase A24 N-terminal domain SH04_RS19015 PF13322 Domain of unknown function (DUF4092) SH04_RS19015 PF13402 Peptidase M60, enhancin and enhancin-like SH04_RS19015 PF17291 N-terminal domain of M60-like peptidases SH04_RS19025 PF02652 L-lactate permease SH04_RS19030 PF01274 Malate synthase SH04_RS19035 PF03928 Haem-degrading SH04_RS19040 PF02754 Cysteine-rich domain SH04_RS19040 PF13183 4Fe-4S dicluster domain SH04_RS19045 PF01565 FAD binding domain SH04_RS19050 PF02913 FAD linked oxidases, C-terminal domain SH04_RS19050 PF01565 FAD binding domain SH04_RS19055 PF07729 FCD domain SH04_RS19055 PF00392 Bacterial regulatory proteins, gntR family SH04_RS19065 PF01609 Transposase DDE domain SH04_RS19065 PF05598 Transposase domain (DUF772) SH04_RS19070 PF01943 Polysaccharide biosynthesis protein SH04_RS19090 PF01384 Phosphate transporter family SH04_RS19095 PF05257 CHAP domain SH04_RS19095 PF03738 Glutathionylspermidine synthase preATP-grasp SH04_RS19100 PF02798 Glutathione S-transferase, N-terminal domain SH04_RS19105 PF01455 HupF/HypC family SH04_RS19110 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SH04_RS19115 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE SH04_RS19120 PF01750 Hydrogenase maturation protease SH04_RS19125 PF00374 Nickel-dependent hydrogenase SH04_RS19130 PF03916 Polysulphide reductase, NrfD SH04_RS19135 PF13247 4Fe-4S dicluster domain SH04_RS19140 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SH04_RS19140 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH04_RS19150 PF11115 Protein of unknown function (DUF2623) SH04_RS19160 PF00248 Aldo/keto reductase family SH04_RS19165 PF03350 Uncharacterized protein family, UPF0114 SH04_RS19175 PF02472 Biopolymer transport protein ExbD/TolR SH04_RS19180 PF01618 MotA/TolQ/ExbB proton channel family SH04_RS19190 PF01053 Cys/Met metabolism PLP-dependent enzyme SH04_RS19195 PF09335 SNARE associated Golgi protein SH04_RS19200 PF12833 Helix-turn-helix domain SH04_RS19200 PF06719 AraC-type transcriptional regulator N-terminus SH04_RS19210 PF00465 Iron-containing alcohol dehydrogenase SH04_RS19215 PF00248 Aldo/keto reductase family SH04_RS19220 PF12883 Protein of unknown function (DUF3828) SH04_RS19225 PF04728 Lipoprotein leucine-zipper SH04_RS19230 PF04055 Radical SAM superfamily SH04_RS19230 PF08497 Radical SAM N-terminal SH04_RS19230 PF11842 Domain of unknown function (DUF3362) SH04_RS19235 PF00394 Multicopper oxidase SH04_RS19235 PF07731 Multicopper oxidase SH04_RS19235 PF07732 Multicopper oxidase SH04_RS19240 PF01553 Acyltransferase SH04_RS19245 PF00521 DNA gyrase/topoisomerase IV, subunit A SH04_RS19245 PF03989 DNA gyrase C-terminal domain, beta-propeller SH04_RS19250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH04_RS19255 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA SH04_RS19260 PF15723 Motility quorum-sensing regulator, toxin of MqsA SH04_RS19265 PF06445 GyrI-like small molecule binding domain SH04_RS19270 PF04076 Bacterial OB fold (BOF) protein SH04_RS19275 PF00072 Response regulator receiver domain SH04_RS19275 PF00486 Transcriptional regulatory protein, C terminal SH04_RS19280 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS19280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS19280 PF08521 Two-component sensor kinase N-terminal SH04_RS19285 PF10840 Protein of unknown function (DUF2645) SH04_RS19290 PF02525 Flavodoxin-like fold SH04_RS19295 PF03992 Antibiotic biosynthesis monooxygenase SH04_RS19300 PF01751 Toprim domain SH04_RS19300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS19300 PF00986 DNA gyrase B subunit, carboxyl terminus SH04_RS19300 PF00204 DNA gyrase B SH04_RS19305 PF05728 Uncharacterised protein family (UPF0227) SH04_RS19310 PF00149 Calcineurin-like phosphoesterase SH04_RS19315 PF06853 Protein of unknown function (DUF1249) SH04_RS19320 PF00293 NUDIX domain SH04_RS19325 PF02321 Outer membrane efflux protein SH04_RS19335 PF06693 Protein of unknown function (DUF1190) SH04_RS19340 PF03738 Glutathionylspermidine synthase preATP-grasp SH04_RS19345 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SH04_RS19350 PF02535 ZIP Zinc transporter SH04_RS19360 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SH04_RS19365 PF04380 Membrane fusogenic activity SH04_RS19370 PF00419 Fimbrial protein SH04_RS19375 PF01527 Transposase SH04_RS19380 PF13276 HTH-like domain SH04_RS19380 PF00665 Integrase core domain SH04_RS19385 PF00577 Outer membrane usher protein SH04_RS19385 PF13954 PapC N-terminal domain SH04_RS19385 PF13953 PapC C-terminal domain SH04_RS19390 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH04_RS19390 PF02753 Pili assembly chaperone PapD, C-terminal domain SH04_RS19400 PF08971 Glycogen synthesis protein SH04_RS19405 PF07290 Protein of unknown function (DUF1449) SH04_RS19410 PF01145 SPFH domain / Band 7 family SH04_RS19410 PF15975 Flotillin SH04_RS19425 PF01467 Cytidylyltransferase-like SH04_RS19425 PF00294 pfkB family carbohydrate kinase SH04_RS19430 PF08335 GlnD PII-uridylyltransferase SH04_RS19430 PF03710 Glutamate-ammonia ligase adenylyltransferase SH04_RS19435 PF01928 CYTH domain SH04_RS19445 PF08239 Bacterial SH3 domain SH04_RS19450 PF01743 Poly A polymerase head domain SH04_RS19450 PF12627 Probable RNA and SrmB- binding site of polymerase A SH04_RS19450 PF01966 HD domain SH04_RS19455 PF02673 Bacitracin resistance protein BacA SH04_RS19460 PF02152 Dihydroneopterin aldolase SH04_RS19465 PF02660 Glycerol-3-phosphate acyltransferase SH04_RS19470 PF03466 LysR substrate binding domain SH04_RS19470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS19475 PF05681 Fumarate hydratase (Fumerase) SH04_RS19485 PF00939 Sodium:sulfate symporter transmembrane region SH04_RS19490 PF00814 Glycoprotease family SH04_RS19495 PF01165 Ribosomal protein S21 SH04_RS19500 PF01807 CHC2 zinc finger SH04_RS19500 PF10410 DnaB-helicase binding domain of primase SH04_RS19500 PF08278 DNA primase DnaG DnaB-binding SH04_RS19500 PF08275 DNA primase catalytic core, N-terminal domain SH04_RS19505 PF04546 Sigma-70, non-essential region SH04_RS19505 PF03979 Sigma-70 factor, region 1.1 SH04_RS19505 PF04539 Sigma-70 region 3 SH04_RS19505 PF00140 Sigma-70 factor, region 1.2 SH04_RS19505 PF04542 Sigma-70 region 2 SH04_RS19505 PF04545 Sigma-70, region 4 SH04_RS19510 PF03167 Uracil DNA glycosylase superfamily SH04_RS19520 PF08021 Siderophore-interacting FAD-binding domain SH04_RS19520 PF04954 Siderophore-interacting protein SH04_RS19525 PF03551 Transcriptional regulator PadR-like family SH04_RS19530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH04_RS19530 PF08447 PAS fold SH04_RS19535 PF00202 Aminotransferase class-III SH04_RS19540 PF01588 Putative tRNA binding domain SH04_RS19545 PF00356 Bacterial regulatory proteins, lacI family SH04_RS19550 PF02929 Beta galactosidase small chain SH04_RS19550 PF16353 Domain of unknown function(DUF4981) SH04_RS19550 PF00703 Glycosyl hydrolases family 2 SH04_RS19550 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH04_RS19550 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH04_RS19555 PF04074 YhcH/YjgK/YiaL SH04_RS19560 PF13520 Amino acid permease SH04_RS19570 PF01204 Trehalase SH04_RS19575 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SH04_RS19575 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH04_RS19580 PF01381 Helix-turn-helix SH04_RS19585 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system SH04_RS19595 PF05175 Methyltransferase small domain SH04_RS19600 PF01863 Protein of unknown function DUF45 SH04_RS19605 PF02698 DUF218 domain SH04_RS19610 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH04_RS19615 PF03741 Integral membrane protein TerC family SH04_RS19620 PF00375 Sodium:dicarboxylate symporter family SH04_RS19625 PF10688 Bacterial inner membrane protein SH04_RS19630 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus SH04_RS19630 PF08666 SAF domain SH04_RS19635 PF02614 Glucuronate isomerase SH04_RS19640 PF07690 Major Facilitator Superfamily SH04_RS19645 PF07729 FCD domain SH04_RS19645 PF00392 Bacterial regulatory proteins, gntR family SH04_RS19650 PF09335 SNARE associated Golgi protein SH04_RS19655 PF13721 SecD export protein N-terminal TM region SH04_RS19660 PF06476 Protein of unknown function (DUF1090) SH04_RS19665 PF05957 Bacterial protein of unknown function (DUF883) SH04_RS19670 PF07332 Putative Actinobacterial Holin-X, holin superfamily III SH04_RS19675 PF13997 YqjK-like protein SH04_RS19680 PF07681 DoxX SH04_RS19685 PF13409 Glutathione S-transferase, N-terminal domain SH04_RS19690 PF05656 Protein of unknown function (DUF805) SH04_RS19695 PF05656 Protein of unknown function (DUF805) SH04_RS19700 PF03466 LysR substrate binding domain SH04_RS19700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS19705 PF17954 Quercetinase C-terminal cupin domain SH04_RS19705 PF02678 Pirin SH04_RS19715 PF03313 Serine dehydratase alpha chain SH04_RS19725 PF03315 Serine dehydratase beta chain SH04_RS19725 PF03313 Serine dehydratase alpha chain SH04_RS19730 PF01042 Endoribonuclease L-PSP SH04_RS19735 PF01228 Glycine radical SH04_RS19735 PF02901 Pyruvate formate lyase-like SH04_RS19745 PF01609 Transposase DDE domain SH04_RS19745 PF05598 Transposase domain (DUF772) SH04_RS19750 PF00871 Acetokinase family SH04_RS19755 PF03222 Tryptophan/tyrosine permease family SH04_RS19760 PF00291 Pyridoxal-phosphate dependent enzyme SH04_RS19765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS19765 PF03466 LysR substrate binding domain SH04_RS19785 PF02595 Glycerate kinase family SH04_RS19790 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH04_RS19790 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH04_RS19795 PF03328 HpcH/HpaI aldolase/citrate lyase family SH04_RS19800 PF07690 Major Facilitator Superfamily SH04_RS19805 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus SH04_RS19805 PF08666 SAF domain SH04_RS19810 PF15937 prlF antitoxin for toxin YhaV_toxin SH04_RS19815 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system SH04_RS19820 PF08220 DeoR-like helix-turn-helix domain SH04_RS19820 PF00455 DeoR C terminal sensor domain SH04_RS19825 PF08013 Tagatose 6 phosphate kinase SH04_RS19830 PF03830 PTS system sorbose subfamily IIB component SH04_RS19835 PF03609 PTS system sorbose-specific iic component SH04_RS19840 PF01979 Amidohydrolase family SH04_RS19845 PF01380 SIS domain SH04_RS19850 PF01116 Fructose-bisphosphate aldolase class-II SH04_RS19855 PF03830 PTS system sorbose subfamily IIB component SH04_RS19860 PF03609 PTS system sorbose-specific iic component SH04_RS19865 PF03613 PTS system mannose/fructose/sorbose family IID component SH04_RS19870 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH04_RS19875 PF00419 Fimbrial protein SH04_RS19880 PF02753 Pili assembly chaperone PapD, C-terminal domain SH04_RS19880 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH04_RS19885 PF00577 Outer membrane usher protein SH04_RS19885 PF13953 PapC C-terminal domain SH04_RS19885 PF13954 PapC N-terminal domain SH04_RS19890 PF00419 Fimbrial protein SH04_RS19895 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH04_RS19900 PF04348 LppC putative lipoprotein SH04_RS19905 PF02021 Uncharacterised protein family UPF0102 SH04_RS19910 PF13580 SIS domain SH04_RS19915 PF04972 BON domain SH04_RS19920 PF03773 Predicted permease SH04_RS19925 PF13460 NAD(P)H-binding SH04_RS19930 PF01965 DJ-1/PfpI family SH04_RS19940 PF01541 GIY-YIG catalytic domain SH04_RS19945 PF13508 Acetyltransferase (GNAT) domain SH04_RS19950 PF02036 SCP-2 sterol transfer family SH04_RS19955 PF01136 Peptidase family U32 SH04_RS19960 PF01136 Peptidase family U32 SH04_RS19965 PF00296 Luciferase-like monooxygenase SH04_RS19970 PF03222 Tryptophan/tyrosine permease family SH04_RS19980 PF00270 DEAD/DEAH box helicase SH04_RS19980 PF12343 Cold shock protein DEAD box A SH04_RS19980 PF00271 Helicase conserved C-terminal domain SH04_RS19980 PF03880 DbpA RNA binding domain SH04_RS19985 PF13181 Tetratricopeptide repeat SH04_RS19985 PF07719 Tetratricopeptide repeat SH04_RS19990 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SH04_RS19990 PF00013 KH domain SH04_RS19990 PF01138 3' exoribonuclease family, domain 1 SH04_RS19990 PF03725 3' exoribonuclease family, domain 2 SH04_RS19990 PF00575 S1 RNA binding domain SH04_RS19995 PF00312 Ribosomal protein S15 SH04_RS20000 PF09157 Pseudouridine synthase II TruB, C-terminal SH04_RS20000 PF01509 TruB family pseudouridylate synthase (N terminal domain) SH04_RS20000 PF16198 tRNA pseudouridylate synthase B C-terminal domain SH04_RS20005 PF02033 Ribosome-binding factor A SH04_RS20010 PF11987 Translation-initiation factor 2 SH04_RS20010 PF08364 Bacterial translation initiation factor IF-2 associated region SH04_RS20010 PF04760 Translation initiation factor IF-2, N-terminal region SH04_RS20010 PF00009 Elongation factor Tu GTP binding domain SH04_RS20015 PF00575 S1 RNA binding domain SH04_RS20015 PF08529 NusA N-terminal domain SH04_RS20015 PF13184 NusA-like KH domain SH04_RS20020 PF02576 RimP N-terminal domain SH04_RS20020 PF17384 RimP C-terminal SH3 domain SH04_RS20030 PF00764 Arginosuccinate synthase SH04_RS20035 PF00884 Sulfatase SH04_RS20045 PF03840 Preprotein translocase SecG subunit SH04_RS20050 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH04_RS20050 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH04_RS20050 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH04_RS20050 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH04_RS20055 PF00809 Pterin binding enzyme SH04_RS20060 PF06480 FtsH Extracellular SH04_RS20060 PF17862 AAA+ lid domain SH04_RS20060 PF00004 ATPase family associated with various cellular activities (AAA) SH04_RS20060 PF01434 Peptidase family M41 SH04_RS20065 PF01728 FtsJ-like methyltransferase SH04_RS20070 PF01985 CRS1 / YhbY (CRM) domain SH04_RS20075 PF01272 Transcription elongation factor, GreA/GreB, C-term SH04_RS20075 PF03449 Transcription elongation factor, N-terminal SH04_RS20080 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family SH04_RS20085 PF01018 GTP1/OBG SH04_RS20085 PF01926 50S ribosome-binding GTPase SH04_RS20090 PF00892 EamA-like transporter family SH04_RS20095 PF01016 Ribosomal L27 protein SH04_RS20100 PF00829 Ribosomal prokaryotic L21 protein SH04_RS20105 PF00348 Polyprenyl synthetase SH04_RS20110 PF13693 Winged helix-turn-helix DNA-binding SH04_RS20115 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SH04_RS20120 PF01722 BolA-like protein SH04_RS20125 PF13466 STAS domain SH04_RS20130 PF05494 MlaC protein SH04_RS20135 PF02470 MlaD protein SH04_RS20140 PF02405 Permease MlaE SH04_RS20145 PF00005 ABC transporter SH04_RS20150 PF01699 Sodium/calcium exchanger protein SH04_RS20155 PF00571 CBS domain SH04_RS20155 PF01380 SIS domain SH04_RS20165 PF06835 Lipopolysaccharide-assembly, LptC-related SH04_RS20170 PF03968 OstA-like protein SH04_RS20175 PF00005 ABC transporter SH04_RS20175 PF12399 Branched-chain amino acid ATP-binding cassette transporter SH04_RS20180 PF00309 Sigma-54 factor, Activator interacting domain (AID) SH04_RS20180 PF04963 Sigma-54 factor, core binding domain SH04_RS20180 PF04552 Sigma-54, DNA binding domain SH04_RS20185 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SH04_RS20190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH04_RS20195 PF03668 P-loop ATPase protein family SH04_RS20200 PF00381 PTS HPr component phosphorylation site SH04_RS20205 PF10707 PhoP regulatory network protein YrbL SH04_RS20210 PF05598 Transposase domain (DUF772) SH04_RS20210 PF01609 Transposase DDE domain SH04_RS20220 PF06551 Protein of unknown function (DUF1120) SH04_RS20225 PF06250 YhcG PDDEXK nuclease domain SH04_RS20225 PF17761 DUF1016 N-terminal domain SH04_RS20230 PF04074 YhcH/YjgK/YiaL SH04_RS20235 PF00480 ROK family SH04_RS20240 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SH04_RS20245 PF07690 Major Facilitator Superfamily SH04_RS20250 PF00701 Dihydrodipicolinate synthetase family SH04_RS20255 PF07729 FCD domain SH04_RS20255 PF00392 Bacterial regulatory proteins, gntR family SH04_RS20260 PF03606 C4-dicarboxylate anaerobic carrier SH04_RS20265 PF04386 Stringent starvation protein B SH04_RS20270 PF02798 Glutathione S-transferase, N-terminal domain SH04_RS20270 PF00043 Glutathione S-transferase, C-terminal domain SH04_RS20275 PF00380 Ribosomal protein S9/S16 SH04_RS20280 PF00572 Ribosomal protein L13 SH04_RS20285 PF03969 AFG1-like ATPase SH04_RS20290 PF06295 Protein of unknown function (DUF1043) SH04_RS20295 PF13180 PDZ domain SH04_RS20295 PF00595 PDZ domain SH04_RS20300 PF13180 PDZ domain SH04_RS20305 PF00056 lactate/malate dehydrogenase, NAD binding domain SH04_RS20305 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SH04_RS20310 PF02863 Arginine repressor, C-terminal domain SH04_RS20310 PF01316 Arginine repressor, DNA binding domain SH04_RS20315 PF07338 Protein of unknown function (DUF1471) SH04_RS20320 PF01337 Barstar (barnase inhibitor) SH04_RS20325 PF04632 Fusaric acid resistance protein family SH04_RS20330 PF13533 Biotin-lipoyl like SH04_RS20335 PF07869 Protein of unknown function (DUF1656) SH04_RS20340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS20340 PF03466 LysR substrate binding domain SH04_RS20345 PF01523 Putative modulator of DNA gyrase SH04_RS20350 PF13502 AsmA-like C-terminal region SH04_RS20350 PF13116 Protein of unknown function SH04_RS20355 PF10150 Ribonuclease E/G family SH04_RS20355 PF00575 S1 RNA binding domain SH04_RS20360 PF02545 Maf-like protein SH04_RS20365 PF04093 rod shape-determining protein MreD SH04_RS20370 PF04085 rod shape-determining protein MreC SH04_RS20385 PF17157 Gammaproteobacterial periplasmic sensor domain SH04_RS20385 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS20385 PF00563 EAL domain SH04_RS20390 PF00107 Zinc-binding dehydrogenase SH04_RS20390 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS20405 PF01794 Ferric reductase like transmembrane component SH04_RS20410 PF00364 Biotin-requiring enzyme SH04_RS20415 PF02785 Biotin carboxylase C-terminal domain SH04_RS20415 PF00289 Biotin carboxylase, N-terminal domain SH04_RS20415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH04_RS20420 PF06196 Protein of unknown function (DUF997) SH04_RS20425 PF00474 Sodium:solute symporter family SH04_RS20435 PF01207 Dihydrouridine synthase (Dus) SH04_RS20440 PF02954 Bacterial regulatory protein, Fis family SH04_RS20445 PF01555 DNA methylase SH04_RS20450 PF10831 Protein of unknown function (DUF2556) SH04_RS20455 PF00440 Bacterial regulatory proteins, tetR family SH04_RS20455 PF08361 MAATS-type transcriptional repressor, C-terminal region SH04_RS20460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH04_RS20460 PF00529 HlyD membrane-fusion protein of T1SS SH04_RS20465 PF00873 AcrB/AcrD/AcrF family SH04_RS20480 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH04_RS20485 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS20490 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS20495 PF00005 ABC transporter SH04_RS20535 PF00132 Bacterial transferase hexapeptide (six repeats) SH04_RS20540 PF07369 Protein of unknown function (DUF1488) SH04_RS20545 PF08501 Shikimate dehydrogenase substrate binding domain SH04_RS20545 PF01488 Shikimate / quinate 5-dehydrogenase SH04_RS20545 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SH04_RS20550 PF01300 Telomere recombination SH04_RS20555 PF01396 Topoisomerase DNA binding C4 zinc finger SH04_RS20560 PF04361 Protein of unknown function (DUF494) SH04_RS20565 PF02481 DNA recombination-mediator protein A SH04_RS20565 PF17782 DprA winged helix domain SH04_RS20570 PF01327 Polypeptide deformylase SH04_RS20575 PF02911 Formyl transferase, C-terminal domain SH04_RS20575 PF00551 Formyl transferase SH04_RS20580 PF01189 16S rRNA methyltransferase RsmB/F SH04_RS20580 PF01029 NusB family SH04_RS20585 PF02254 TrkA-N domain SH04_RS20585 PF02080 TrkA-C domain SH04_RS20590 PF01741 Large-conductance mechanosensitive channel, MscL SH04_RS20595 PF03889 Alternative ribosome-rescue factor A SH04_RS20600 PF13411 MerR HTH family regulatory protein SH04_RS20605 PF09350 Domain of unknown function (DUF1992) SH04_RS20610 PF01196 Ribosomal protein L17 SH04_RS20615 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SH04_RS20615 PF01000 RNA polymerase Rpb3/RpoA insert domain SH04_RS20615 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SH04_RS20620 PF00163 Ribosomal protein S4/S9 N-terminal domain SH04_RS20620 PF01479 S4 domain SH04_RS20625 PF00411 Ribosomal protein S11 SH04_RS20630 PF00416 Ribosomal protein S13/S18 SH04_RS20635 PF00444 Ribosomal protein L36 SH04_RS20640 PF00344 SecY translocase SH04_RS20645 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SH04_RS20650 PF00327 Ribosomal protein L30p/L7e SH04_RS20655 PF00333 Ribosomal protein S5, N-terminal domain SH04_RS20655 PF03719 Ribosomal protein S5, C-terminal domain SH04_RS20660 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SH04_RS20665 PF00347 Ribosomal protein L6 SH04_RS20670 PF00410 Ribosomal protein S8 SH04_RS20675 PF00253 Ribosomal protein S14p/S29e SH04_RS20680 PF00281 Ribosomal protein L5 SH04_RS20680 PF00673 ribosomal L5P family C-terminus SH04_RS20685 PF00467 KOW motif SH04_RS20685 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SH04_RS20690 PF00238 Ribosomal protein L14p/L23e SH04_RS20695 PF00366 Ribosomal protein S17 SH04_RS20700 PF00831 Ribosomal L29 protein SH04_RS20705 PF00252 Ribosomal protein L16p/L10e SH04_RS20710 PF07650 KH domain SH04_RS20710 PF00189 Ribosomal protein S3, C-terminal domain SH04_RS20715 PF00237 Ribosomal protein L22p/L17e SH04_RS20720 PF00203 Ribosomal protein S19 SH04_RS20725 PF03947 Ribosomal Proteins L2, C-terminal domain SH04_RS20725 PF00181 Ribosomal Proteins L2, RNA binding domain SH04_RS20730 PF00276 Ribosomal protein L23 SH04_RS20735 PF00573 Ribosomal protein L4/L1 family SH04_RS20740 PF00297 Ribosomal protein L3 SH04_RS20745 PF00338 Ribosomal protein S10p/S20e SH04_RS20755 PF01471 Putative peptidoglycan binding domain SH04_RS20755 PF13401 AAA domain SH04_RS20760 PF11356 Type II secretion system protein C SH04_RS20765 PF03958 Bacterial type II/III secretion system short domain SH04_RS20765 PF00263 Bacterial type II and III secretion system protein SH04_RS20770 PF00437 Type II/IV secretion system protein SH04_RS20775 PF00482 Type II secretion system (T2SS), protein F SH04_RS20780 PF08334 Type II secretion system (T2SS), protein G SH04_RS20780 PF07963 Prokaryotic N-terminal methylation motif SH04_RS20785 PF07963 Prokaryotic N-terminal methylation motif SH04_RS20785 PF12019 Type II transport protein GspH SH04_RS20790 PF02501 Type II secretion system (T2SS), protein I SH04_RS20790 PF07963 Prokaryotic N-terminal methylation motif SH04_RS20795 PF11612 Type II secretion system (T2SS), protein J SH04_RS20795 PF07963 Prokaryotic N-terminal methylation motif SH04_RS20800 PF03934 Type II secretion system (T2SS), protein K SH04_RS20805 PF12693 GspL periplasmic domain SH04_RS20805 PF05134 Type II secretion system (T2SS), protein L SH04_RS20810 PF04612 Type II secretion system (T2SS), protein M SH04_RS20815 PF01478 Type IV leader peptidase family SH04_RS20820 PF00210 Ferritin-like domain SH04_RS20825 PF04324 BFD-like [2Fe-2S] binding domain SH04_RS20830 PF02839 Carbohydrate binding domain SH04_RS20835 PF03143 Elongation factor Tu C-terminal domain SH04_RS20835 PF03144 Elongation factor Tu domain 2 SH04_RS20835 PF00009 Elongation factor Tu GTP binding domain SH04_RS20840 PF14492 Elongation Factor G, domain II SH04_RS20840 PF00679 Elongation factor G C-terminus SH04_RS20840 PF03764 Elongation factor G, domain IV SH04_RS20840 PF03144 Elongation factor Tu domain 2 SH04_RS20840 PF00009 Elongation factor Tu GTP binding domain SH04_RS20845 PF00177 Ribosomal protein S7p/S5e SH04_RS20850 PF00164 Ribosomal protein S12/S23 SH04_RS20855 PF04077 DsrH like protein SH04_RS20860 PF02635 DsrE/DsrF-like family SH04_RS20865 PF02635 DsrE/DsrF-like family SH04_RS20870 PF08348 YheO-like PAS domain SH04_RS20870 PF13309 HTH domain SH04_RS20875 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SH04_RS20875 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH04_RS20880 PF04102 SlyX SH04_RS20885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH04_RS20890 PF09526 Probable metal-binding protein (DUF2387) SH04_RS20895 PF00999 Sodium/hydrogen exchanger family SH04_RS20895 PF02254 TrkA-N domain SH04_RS20900 PF02525 Flavodoxin-like fold SH04_RS20905 PF00005 ABC transporter SH04_RS20905 PF12848 ABC transporter SH04_RS20910 PF00561 alpha/beta hydrolase fold SH04_RS20915 PF06794 Uncharacterised protein family (UPF0270) SH04_RS20920 PF00485 Phosphoribulokinase / Uridine kinase family SH04_RS20925 PF02566 OsmC-like protein SH04_RS20935 PF13545 Crp-like helix-turn-helix domain SH04_RS20935 PF00027 Cyclic nucleotide-binding domain SH04_RS20940 PF12805 FUSC-like inner membrane protein yccS SH04_RS20945 PF00202 Aminotransferase class-III SH04_RS20950 PF00117 Glutamine amidotransferase class-I SH04_RS20955 PF02661 Fic/DOC family SH04_RS20960 PF10832 Protein of unknown function (DUF2559) SH04_RS20965 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SH04_RS20970 PF07690 Major Facilitator Superfamily SH04_RS20975 PF04324 BFD-like [2Fe-2S] binding domain SH04_RS20975 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SH04_RS20975 PF18267 Rubredoxin NAD+ reductase C-terminal domain SH04_RS20975 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH04_RS20975 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SH04_RS20980 PF13806 Rieske-like [2Fe-2S] domain SH04_RS20985 PF01226 Formate/nitrite transporter SH04_RS20990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH04_RS20990 PF14824 Sirohaem biosynthesis protein central SH04_RS20990 PF10414 Sirohaem synthase dimerisation region SH04_RS20995 PF13978 Protein of unknown function (DUF4223) SH04_RS21000 PF13520 Amino acid permease SH04_RS21005 PF01380 SIS domain SH04_RS21010 PF01261 Xylose isomerase-like TIM barrel SH04_RS21015 PF00294 pfkB family carbohydrate kinase SH04_RS21020 PF07702 UTRA domain SH04_RS21020 PF00392 Bacterial regulatory proteins, gntR family SH04_RS21025 PF00155 Aminotransferase class I and II SH04_RS21030 PF10797 Protein of unknown function SH04_RS21035 PF10941 Protein of unknown function DUF2620 SH04_RS21040 PF02126 Phosphotriesterase family SH04_RS21045 PF01676 Metalloenzyme superfamily SH04_RS21050 PF01168 Alanine racemase, N-terminal domain SH04_RS21060 PF14502 Helix-turn-helix domain SH04_RS21060 PF14503 YhfZ C-terminal domain SH04_RS21065 PF00579 tRNA synthetases class I (W and Y) SH04_RS21070 PF13419 Haloacid dehalogenase-like hydrolase SH04_RS21075 PF00834 Ribulose-phosphate 3 epimerase family SH04_RS21080 PF02086 D12 class N6 adenine-specific DNA methyltransferase SH04_RS21085 PF05036 Sporulation related domain SH04_RS21090 PF01761 3-dehydroquinate synthase SH04_RS21095 PF01202 Shikimate kinase SH04_RS21100 PF00263 Bacterial type II and III secretion system protein SH04_RS21100 PF03958 Bacterial type II/III secretion system short domain SH04_RS21105 PF10748 DNA utilization proteins HofP SH04_RS21115 PF05137 Fimbrial assembly protein (PilN) SH04_RS21125 PF17092 Penicillin-binding protein OB-like domain SH04_RS21125 PF00912 Transglycosylase SH04_RS21125 PF00905 Penicillin binding protein transpeptidase domain SH04_RS21130 PF00293 NUDIX domain SH04_RS21135 PF07095 Intracellular growth attenuator protein IgaA SH04_RS21140 PF13419 Haloacid dehalogenase-like hydrolase SH04_RS21145 PF01479 S4 domain SH04_RS21150 PF01430 Hsp33 protein SH04_RS21155 PF13687 Domain of unknown function (DUF4153) SH04_RS21165 PF01293 Phosphoenolpyruvate carboxykinase SH04_RS21170 PF00512 His Kinase A (phospho-acceptor) domain SH04_RS21170 PF00672 HAMP domain SH04_RS21170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS21175 PF00072 Response regulator receiver domain SH04_RS21175 PF00486 Transcriptional regulatory protein, C terminal SH04_RS21180 PF03449 Transcription elongation factor, N-terminal SH04_RS21180 PF01272 Transcription elongation factor, GreA/GreB, C-term SH04_RS21185 PF09371 Tex-like protein N-terminal domain SH04_RS21185 PF16921 Tex protein YqgF-like domain SH04_RS21185 PF17674 HHH domain SH04_RS21185 PF00575 S1 RNA binding domain SH04_RS21190 PF04023 FeoA domain SH04_RS21195 PF07670 Nucleoside recognition SH04_RS21195 PF02421 Ferrous iron transport protein B SH04_RS21195 PF17910 FeoB cytosolic helical domain SH04_RS21195 PF07664 Ferrous iron transport protein B C terminus SH04_RS21200 PF09012 FeoC like transcriptional regulator SH04_RS21205 PF04754 Putative transposase, YhgA-like SH04_RS21210 PF00561 alpha/beta hydrolase fold SH04_RS21215 PF00156 Phosphoribosyl transferase domain SH04_RS21220 PF01521 Iron-sulphur cluster biosynthesis SH04_RS21220 PF01106 NifU-like domain SH04_RS21225 PF02447 GntP family permease SH04_RS21230 PF02446 4-alpha-glucanotransferase SH04_RS21235 PF00343 Carbohydrate phosphorylase SH04_RS21240 PF00196 Bacterial regulatory proteins, luxR family SH04_RS21240 PF17874 MalT-like TPR region SH04_RS21245 PF01137 RNA 3'-terminal phosphate cyclase SH04_RS21245 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain SH04_RS21250 PF01139 tRNA-splicing ligase RtcB SH04_RS21255 PF00158 Sigma-54 interaction domain SH04_RS21255 PF06956 Regulator of RNA terminal phosphate cyclase SH04_RS21260 PF08220 DeoR-like helix-turn-helix domain SH04_RS21260 PF00455 DeoR C terminal sensor domain SH04_RS21265 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease SH04_RS21265 PF01694 Rhomboid family SH04_RS21270 PF00581 Rhodanese-like domain SH04_RS21275 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SH04_RS21275 PF01266 FAD dependent oxidoreductase SH04_RS21285 PF00343 Carbohydrate phosphorylase SH04_RS21290 PF00534 Glycosyl transferases group 1 SH04_RS21290 PF08323 Starch synthase catalytic domain SH04_RS21295 PF00483 Nucleotidyl transferase SH04_RS21300 PF00128 Alpha amylase, catalytic domain SH04_RS21300 PF18390 Glycogen debranching enzyme C-terminal domain SH04_RS21300 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH04_RS21305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH04_RS21305 PF02806 Alpha amylase, C-terminal all-beta domain SH04_RS21305 PF00128 Alpha amylase, catalytic domain SH04_RS21310 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH04_RS21310 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH04_RS21315 PF01914 MarC family integral membrane protein SH04_RS21320 PF02447 GntP family permease SH04_RS21325 PF01202 Shikimate kinase SH04_RS21330 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH04_RS21330 PF00356 Bacterial regulatory proteins, lacI family SH04_RS21335 PF17954 Quercetinase C-terminal cupin domain SH04_RS21335 PF02678 Pirin SH04_RS21340 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH04_RS21340 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH04_RS21345 PF00583 Acetyltransferase (GNAT) family SH04_RS21350 PF05638 Type VI secretion system effector, Hcp SH04_RS21360 PF03400 IS1 transposase SH04_RS21365 PF15567 Immunity protein 35 SH04_RS21375 PF10956 Protein of unknown function (DUF2756) SH04_RS21380 PF03009 Glycerophosphoryl diester phosphodiesterase family SH04_RS21385 PF17912 MalK OB fold domain SH04_RS21385 PF00005 ABC transporter SH04_RS21390 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS21395 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS21400 PF13416 Bacterial extracellular solute-binding protein SH04_RS21410 PF00005 ABC transporter SH04_RS21415 PF00005 ABC transporter SH04_RS21415 PF12399 Branched-chain amino acid ATP-binding cassette transporter SH04_RS21420 PF02653 Branched-chain amino acid transport system / permease component SH04_RS21420 PF11862 Domain of unknown function (DUF3382) SH04_RS21425 PF02653 Branched-chain amino acid transport system / permease component SH04_RS21430 PF13458 Periplasmic binding protein SH04_RS21435 PF12568 Acetyltransferase (GNAT) domain, PanZ SH04_RS21445 PF13458 Periplasmic binding protein SH04_RS21450 PF04542 Sigma-70 region 2 SH04_RS21450 PF04545 Sigma-70, region 4 SH04_RS21455 PF02687 FtsX-like permease family SH04_RS21455 PF18075 FtsX extracellular domain SH04_RS21460 PF00005 ABC transporter SH04_RS21465 PF02881 SRP54-type protein, helical bundle domain SH04_RS21465 PF00448 SRP54-type protein, GTPase domain SH04_RS21475 PF06611 Protein of unknown function (DUF1145) SH04_RS21480 PF10694 Protein of unknown function (DUF2500) SH04_RS21485 PF07947 YhhN family SH04_RS21490 PF00403 Heavy-metal-associated domain SH04_RS21495 PF01206 Sulfurtransferase TusA SH04_RS21500 PF02592 Putative vitamin uptake transporter SH04_RS21505 PF08786 DcrB SH04_RS21510 PF07690 Major Facilitator Superfamily SH04_RS21515 PF01594 AI-2E family transporter SH04_RS21520 PF01648 4'-phosphopantetheinyl transferase superfamily SH04_RS21525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH04_RS21530 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS21535 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS21540 PF00005 ABC transporter SH04_RS21545 PF00005 ABC transporter SH04_RS21550 PF08753 NikR C terminal nickel binding domain SH04_RS21550 PF01402 Ribbon-helix-helix protein, copG family SH04_RS21555 PF14220 Domain of unknown function (DUF4329) SH04_RS21555 PF03527 RHS protein SH04_RS21555 PF05593 RHS Repeat SH04_RS21560 PF15631 NTF2 fold immunity protein SH04_RS21570 PF13808 DDE_Tnp_1-associated SH04_RS21570 PF01609 Transposase DDE domain SH04_RS21580 PF00005 ABC transporter SH04_RS21585 PF13533 Biotin-lipoyl like SH04_RS21590 PF13258 Domain of unknown function (DUF4049) SH04_RS21610 PF10951 Protein of unknown function (DUF2776) SH04_RS21620 PF01384 Phosphate transporter family SH04_RS21625 PF10625 Universal stress protein B (UspB) SH04_RS21630 PF00582 Universal stress protein family SH04_RS21635 PF00854 POT family SH04_RS21640 PF04445 Putative SAM-dependent methyltransferase SH04_RS21645 PF01432 Peptidase family M3 SH04_RS21650 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ SH04_RS21655 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH04_RS21655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH04_RS21670 PF01022 Bacterial regulatory protein, arsR family SH04_RS21675 PF02040 Arsenical pump membrane protein SH04_RS21680 PF03960 ArsC family SH04_RS21690 PF01609 Transposase DDE domain SH04_RS21690 PF05598 Transposase domain (DUF772) SH04_RS21700 PF03843 Outer membrane lipoprotein Slp family SH04_RS21705 PF00196 Bacterial regulatory proteins, luxR family SH04_RS21710 PF02308 MgtC family SH04_RS21715 PF06411 HdeA/HdeB family SH04_RS21720 PF06411 HdeA/HdeB family SH04_RS21725 PF03729 Short repeat of unknown function (DUF308) SH04_RS21730 PF00196 Bacterial regulatory proteins, luxR family SH04_RS21740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH04_RS21740 PF00529 HlyD membrane-fusion protein of T1SS SH04_RS21745 PF00873 AcrB/AcrD/AcrF family SH04_RS21750 PF12833 Helix-turn-helix domain SH04_RS21755 PF12833 Helix-turn-helix domain SH04_RS21760 PF00282 Pyridoxal-dependent decarboxylase conserved domain SH04_RS21765 PF03150 Di-haem cytochrome c peroxidase SH04_RS21765 PF00034 Cytochrome c SH04_RS21765 PF14376 Haem-binding domain SH04_RS21770 PF01204 Trehalase SH04_RS21775 PF00196 Bacterial regulatory proteins, luxR family SH04_RS21780 PF03466 LysR substrate binding domain SH04_RS21780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS21785 PF03631 Virulence factor BrkB SH04_RS21790 PF00083 Sugar (and other) transporter SH04_RS21790 PF07690 Major Facilitator Superfamily SH04_RS21795 PF05170 AsmA family SH04_RS21800 PF00563 EAL domain SH04_RS21810 PF00294 pfkB family carbohydrate kinase SH04_RS21815 PF05193 Peptidase M16 inactive domain SH04_RS21815 PF00675 Insulinase (Peptidase family M16) SH04_RS21820 PF00375 Sodium:dicarboxylate symporter family SH04_RS21825 PF17154 Gammaproteobacterial periplasmic sensor domain SH04_RS21825 PF00563 EAL domain SH04_RS21825 PF00672 HAMP domain SH04_RS21825 PF00990 Diguanylate cyclase, GGDEF domain SH04_RS21830 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) SH04_RS21835 PF01270 Glycosyl hydrolases family 8 SH04_RS21840 PF03170 Bacterial cellulose synthase subunit SH04_RS21845 PF03552 Cellulose synthase SH04_RS21845 PF00535 Glycosyl transferase family 2 SH04_RS21845 PF07238 PilZ domain SH04_RS21850 PF06564 Cellulose biosynthesis protein BcsQ SH04_RS21855 PF10945 Cellulose biosynthesis protein BcsR SH04_RS21860 PF05598 Transposase domain (DUF772) SH04_RS21860 PF01609 Transposase DDE domain SH04_RS21865 PF10995 Cellulose biosynthesis GIL SH04_RS21870 PF11120 Cellulose biosynthesis protein BcsF SH04_RS21875 PF11658 Cellulose biosynthesis protein BcsG SH04_RS21880 PF13940 Toxin Ldr, type I toxin-antitoxin system SH04_RS21890 PF03222 Tryptophan/tyrosine permease family SH04_RS21895 PF00005 ABC transporter SH04_RS21895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH04_RS21900 PF00005 ABC transporter SH04_RS21900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH04_RS21905 PF12911 N-terminal TM domain of oligopeptide transport permease C SH04_RS21905 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS21910 PF00528 Binding-protein-dependent transport system inner membrane component SH04_RS21920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH04_RS21935 PF00884 Sulfatase SH04_RS21935 PF08019 Phosphoethanolamine transferase EptA/EptB SH04_RS21940 PF07690 Major Facilitator Superfamily SH04_RS21945 PF03797 Autotransporter beta-domain SH04_RS21950 PF03352 Methyladenine glycosylase SH04_RS21955 PF00583 Acetyltransferase (GNAT) family SH04_RS21960 PF00384 Molybdopterin oxidoreductase SH04_RS21960 PF18364 Molybdopterin oxidoreductase N-terminal domain SH04_RS21960 PF01568 Molydopterin dinucleotide binding domain SH04_RS21965 PF00691 OmpA family SH04_RS21965 PF13488 Glycine zipper SH04_RS21970 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH04_RS21970 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH04_RS21975 PF11254 Protein of unknown function (DUF3053) SH04_RS21980 PF01381 Helix-turn-helix SH04_RS21985 PF00313 'Cold-shock' DNA-binding domain SH04_RS21990 PF01848 Hok/gef family SH04_RS22000 PF13276 HTH-like domain SH04_RS22000 PF00665 Integrase core domain SH04_RS22000 PF13333 Integrase core domain SH04_RS22005 PF02092 Glycyl-tRNA synthetase beta subunit SH04_RS22005 PF05746 DALR anticodon binding domain SH04_RS22010 PF02091 Glycyl-tRNA synthetase alpha subunit SH04_RS22015 PF13983 YsaB-like lipoprotein SH04_RS22020 PF01757 Acyltransferase family SH04_RS22025 PF05360 yiaA/B two helix domain SH04_RS22030 PF05360 yiaA/B two helix domain SH04_RS22035 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH04_RS22035 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH04_RS22045 PF13407 Periplasmic binding protein domain SH04_RS22050 PF03400 IS1 transposase SH04_RS22055 PF13407 Periplasmic binding protein domain SH04_RS22060 PF00005 ABC transporter SH04_RS22065 PF02653 Branched-chain amino acid transport system / permease component SH04_RS22070 PF12833 Helix-turn-helix domain SH04_RS22075 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH04_RS22080 PF00128 Alpha amylase, catalytic domain SH04_RS22085 PF00155 Aminotransferase class I and II SH04_RS22095 PF13247 4Fe-4S dicluster domain SH04_RS22100 PF01614 Bacterial transcriptional regulator SH04_RS22100 PF09339 IclR helix-turn-helix domain SH04_RS22105 PF02615 Malate/L-lactate dehydrogenase SH04_RS22110 PF04074 YhcH/YjgK/YiaL SH04_RS22115 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SH04_RS22120 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SH04_RS22125 PF03480 Bacterial extracellular solute-binding protein, family 7 SH04_RS22130 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH04_RS22130 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH04_RS22135 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH04_RS22140 PF01261 Xylose isomerase-like TIM barrel SH04_RS22145 PF00596 Class II Aldolase and Adducin N-terminal domain SH04_RS22150 PF06629 MltA-interacting protein MipA SH04_RS22155 PF03466 LysR substrate binding domain SH04_RS22155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH04_RS22160 PF00529 HlyD membrane-fusion protein of T1SS SH04_RS22160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH04_RS22165 PF11742 Protein of unknown function (DUF3302) SH04_RS22175 PF00171 Aldehyde dehydrogenase family SH04_RS22180 PF00465 Iron-containing alcohol dehydrogenase SH04_RS22185 PF09107 Elongation factor SelB, winged helix SH04_RS22185 PF03144 Elongation factor Tu domain 2 SH04_RS22185 PF00009 Elongation factor Tu GTP binding domain SH04_RS22185 PF09106 Elongation factor SelB, winged helix SH04_RS22190 PF03841 L-seryl-tRNA selenium transferase SH04_RS22190 PF12390 Selenocysteine synthase N terminal SH04_RS22195 PF13417 Glutathione S-transferase, N-terminal domain SH04_RS22195 PF00043 Glutathione S-transferase, C-terminal domain SH04_RS22200 PF05593 RHS Repeat SH04_RS22200 PF03527 RHS protein SH04_RS22200 PF15606 Bacterial toxin 34 SH04_RS22205 PF03130 PBS lyase HEAT-like repeat SH04_RS22210 PF03527 RHS protein SH04_RS22225 PF00529 HlyD membrane-fusion protein of T1SS SH04_RS22225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH04_RS22230 PF11742 Protein of unknown function (DUF3302) SH04_RS22240 PF08125 Mannitol dehydrogenase C-terminal domain SH04_RS22240 PF01232 Mannitol dehydrogenase Rossmann domain SH04_RS22245 PF05068 Mannitol repressor SH04_RS22255 PF10928 Protein of unknown function (DUF2810) SH04_RS22260 PF02652 L-lactate permease SH04_RS22265 PF07729 FCD domain SH04_RS22265 PF00392 Bacterial regulatory proteins, gntR family SH04_RS22270 PF01070 FMN-dependent dehydrogenase SH04_RS22275 PF00588 SpoU rRNA Methylase family SH04_RS22280 PF00132 Bacterial transferase hexapeptide (six repeats) SH04_RS22280 PF06426 Serine acetyltransferase, N-terminal SH04_RS22285 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SH04_RS22285 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SH04_RS22290 PF02556 Preprotein translocase subunit SecB SH04_RS22295 PF00462 Glutaredoxin SH04_RS22300 PF00581 Rhodanese-like domain SH04_RS22310 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SH04_RS22310 PF01676 Metalloenzyme superfamily SH04_RS22315 PF01551 Peptidase family M23 SH04_RS22320 PF04748 Divergent polysaccharide deacetylase SH04_RS22325 PF00535 Glycosyl transferase family 2 SH04_RS22330 PF08240 Alcohol dehydrogenase GroES-like domain SH04_RS22330 PF00107 Zinc-binding dehydrogenase SH04_RS22335 PF00155 Aminotransferase class I and II SH04_RS22340 PF09612 Bacterial protein of unknown function (HtrL_YibB) SH04_RS22345 PF01370 NAD dependent epimerase/dehydratase family SH04_RS22350 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH04_RS22355 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH04_RS22360 PF04932 O-Antigen ligase SH04_RS22365 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH04_RS22375 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) SH04_RS22380 PF08437 Glycosyl transferase family 8 C-terminal SH04_RS22380 PF01501 Glycosyl transferase family 8 SH04_RS22385 PF01501 Glycosyl transferase family 8 SH04_RS22385 PF08437 Glycosyl transferase family 8 C-terminal SH04_RS22390 PF00534 Glycosyl transferases group 1 SH04_RS22390 PF13439 Glycosyltransferase Family 4 SH04_RS22405 PF00534 Glycosyl transferases group 1 SH04_RS22405 PF13439 Glycosyltransferase Family 4 SH04_RS22410 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH04_RS22415 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SH04_RS22420 PF01467 Cytidylyltransferase-like SH04_RS22425 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SH04_RS22425 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SH04_RS22425 PF06827 Zinc finger found in FPG and IleRS SH04_RS22430 PF00471 Ribosomal protein L33 SH04_RS22435 PF00830 Ribosomal L28 family SH04_RS22440 PF04002 RadC-like JAB domain SH04_RS22445 PF04127 DNA / pantothenate metabolism flavoprotein SH04_RS22445 PF02441 Flavoprotein SH04_RS22450 PF00692 dUTPase SH04_RS22455 PF00440 Bacterial regulatory proteins, tetR family SH04_RS22460 PF00156 Phosphoribosyl transferase domain SH04_RS22465 PF01138 3' exoribonuclease family, domain 1 SH04_RS22465 PF03725 3' exoribonuclease family, domain 2 SH04_RS22470 PF03755 YicC-like family, N-terminal region SH04_RS22470 PF08340 Domain of unknown function (DUF1732) SH04_RS22480 PF03458 UPF0126 domain SH04_RS22485 PF01653 NAD-dependent DNA ligase adenylation domain SH04_RS22485 PF03120 NAD-dependent DNA ligase OB-fold domain SH04_RS22490 PF00625 Guanylate kinase SH04_RS22495 PF01192 RNA polymerase Rpb6 SH04_RS22500 PF02824 TGS domain SH04_RS22500 PF13291 ACT domain SH04_RS22500 PF04607 Region found in RelA / SpoT proteins SH04_RS22505 PF12105 SpoU, rRNA methylase, C-terminal SH04_RS22505 PF00588 SpoU rRNA Methylase family SH04_RS22510 PF00270 DEAD/DEAH box helicase SH04_RS22510 PF00271 Helicase conserved C-terminal domain SH04_RS22510 PF17191 RecG wedge domain SH04_RS22515 PF03616 Sodium/glutamate symporter SH04_RS22520 PF00860 Permease family SH04_RS22525 PF05170 AsmA family SH04_RS22530 PF13802 Galactose mutarotase-like SH04_RS22530 PF01055 Glycosyl hydrolases family 31 SH04_RS22550 PF07690 Major Facilitator Superfamily SH04_RS22555 PF00892 EamA-like transporter family SH04_RS22560 PF03180 NLPA lipoprotein SH04_RS22575 PF07690 Major Facilitator Superfamily SH04_RS22580 PF06711 Protein of unknown function (DUF1198) SH04_RS22585 PF00860 Permease family SH04_RS22590 PF01979 Amidohydrolase family SH04_RS22590 PF13382 Adenine deaminase C-terminal domain SH04_RS22595 PF07690 Major Facilitator Superfamily SH04_RS22600 PF07690 Major Facilitator Superfamily SH04_RS22605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS22605 PF07730 Histidine kinase SH04_RS22605 PF05231 MASE1 SH04_RS22610 PF00072 Response regulator receiver domain SH04_RS22610 PF00196 Bacterial regulatory proteins, luxR family SH04_RS22615 PF01842 ACT domain SH04_RS22620 PF00205 Thiamine pyrophosphate enzyme, central domain SH04_RS22620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH04_RS22620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH04_RS22625 PF08049 IlvB leader peptide SH04_RS22640 PF13939 Toxin TisB, type I toxin-antitoxin system SH04_RS22645 PF07690 Major Facilitator Superfamily SH04_RS22655 PF02656 Domain of unknown function (DUF202) SH04_RS22660 PF02656 Domain of unknown function (DUF202) SH04_RS22670 PF16347 Domain of unknown function (DUF4976) SH04_RS22670 PF00884 Sulfatase SH04_RS22675 PF00474 Sodium:solute symporter family SH04_RS22680 PF12833 Helix-turn-helix domain SH04_RS22680 PF02311 AraC-like ligand binding domain SH04_RS22685 PF02056 Family 4 glycosyl hydrolase SH04_RS22690 PF00367 phosphotransferase system, EIIB SH04_RS22695 PF02378 Phosphotransferase system, EIIC SH04_RS22700 PF00392 Bacterial regulatory proteins, gntR family SH04_RS22700 PF07702 UTRA domain SH04_RS22705 PF06826 Predicted Permease Membrane Region SH04_RS22705 PF02080 TrkA-C domain SH04_RS22710 PF00011 Hsp20/alpha crystallin family SH04_RS22715 PF00011 Hsp20/alpha crystallin family SH04_RS22720 PF07119 Protein of unknown function (DUF1375) SH04_RS22725 PF12566 Protein of unknown function (DUF3748) SH04_RS22725 PF07676 WD40-like Beta Propeller Repeat SH04_RS22730 PF01494 FAD binding domain SH04_RS22735 PF07690 Major Facilitator Superfamily SH04_RS22740 PF13378 Enolase C-terminal domain-like SH04_RS22740 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH04_RS22745 PF01081 KDPG and KHG aldolase SH04_RS22750 PF05035 2-keto-3-deoxy-galactonokinase SH04_RS22755 PF00392 Bacterial regulatory proteins, gntR family SH04_RS22755 PF07729 FCD domain SH04_RS22770 PF06078 Bacterial protein of unknown function (DUF937) SH04_RS22780 PF01751 Toprim domain SH04_RS22780 PF18053 DNA gyrase B subunit insert domain SH04_RS22780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH04_RS22780 PF00204 DNA gyrase B SH04_RS22780 PF00986 DNA gyrase B subunit, carboxyl terminus SH04_RS22785 PF02463 RecF/RecN/SMC N terminal domain SH04_RS22790 PF02767 DNA polymerase III beta subunit, central domain SH04_RS22790 PF02768 DNA polymerase III beta subunit, C-terminal domain SH04_RS22790 PF00712 DNA polymerase III beta subunit, N-terminal domain SH04_RS22795 PF00308 Bacterial dnaA protein SH04_RS22795 PF08299 Bacterial dnaA protein helix-turn-helix SH04_RS22795 PF11638 DnaA N-terminal domain SH04_RS22855 PF03400 IS1 transposase SH04_RS22865 PF07151 Protein of unknown function (DUF1391) SH04_RS22875 PF00871 Acetokinase family