SH04_RS00015 SM01234 SH04_RS00015 SH04_RS00110 SM01061 CAT RNA binding domain SH04_RS00120 SM00382 ATPases associated with a variety of cellular activities SH04_RS00155 SM00382 ATPases associated with a variety of cellular activities SH04_RS00200 SM01228 SH04_RS00200 SH04_RS00210 SM00344 helix_turn_helix ASNC type SH04_RS00220 SM00327 von Willebrand factor (vWF) type A domain SH04_RS00225 SM00382 ATPases associated with a variety of cellular activities SH04_RS00240 SM00382 ATPases associated with a variety of cellular activities SH04_RS00260 SM00354 helix_turn _helix lactose operon repressor SH04_RS00270 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS00270 SM00895 SH04_RS00270 SH04_RS00315 SM00382 ATPases associated with a variety of cellular activities SH04_RS00380 SM00487 DEAD-like helicases superfamily SH04_RS00380 SM00490 helicase superfamily c-terminal domain SH04_RS00395 SM00357 Cold shock protein domain SH04_RS00395 SM00382 ATPases associated with a variety of cellular activities SH04_RS00395 SM00959 Rho termination factor, N-terminal domain SH04_RS00420 SM00984 UDP binding domain SH04_RS00525 SM01219 SH04_RS00525 SH04_RS00600 SM00341 Helicase and RNase D C-terminal SH04_RS00600 SM00487 DEAD-like helicases superfamily SH04_RS00600 SM00490 helicase superfamily c-terminal domain SH04_RS00600 SM00956 SH04_RS00600 SH04_RS00690 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SH04_RS00790 SM00563 Phosphate acyltransferases SH04_RS00800 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH04_RS00800 SM00474 3'-5' exonuclease SH04_RS00800 SM00475 5'-3' exonuclease SH04_RS00800 SM00482 DNA polymerase A domain SH04_RS00815 SM00729 Elongator protein 3, MiaB family, Radical SAM SH04_RS00825 SM00382 ATPases associated with a variety of cellular activities SH04_RS00825 SM00448 cheY-homologous receiver domain SH04_RS00830 SM00091 PAS domain SH04_RS00830 SM00387 Histidine kinase-like ATPases SH04_RS00830 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS00835 SM01230 SH04_RS00835 SH04_RS00850 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS00850 SM00866 SH04_RS00850 SH04_RS00895 SM01133 SH04_RS00895 SH04_RS00910 SM00420 helix_turn_helix, Deoxyribose operon repressor SH04_RS00910 SM01134 SH04_RS00910 SH04_RS00970 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS01010 SM01007 Class II Aldolase and Adducin N-terminal domain SH04_RS01030 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS01035 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS01065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS01065 SM00387 Histidine kinase-like ATPases SH04_RS01065 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS01070 SM00448 cheY-homologous receiver domain SH04_RS01070 SM00862 Transcriptional regulatory protein, C terminal SH04_RS01160 SM00382 ATPases associated with a variety of cellular activities SH04_RS01160 SM01086 C-terminal, D2-small domain, of ClpB protein SH04_RS01175 SM00354 helix_turn _helix lactose operon repressor SH04_RS01180 SM00487 DEAD-like helicases superfamily SH04_RS01180 SM00490 helicase superfamily c-terminal domain SH04_RS01280 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS01305 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH04_RS01425 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SH04_RS01425 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH04_RS01430 SM00649 Ribosomal protein L11/L12 SH04_RS01455 SM00663 RNA polymerase I subunit A N-terminus SH04_RS01465 SM00876 Biotin and Thiamin Synthesis associated domain SH04_RS01520 SM00411 bacterial (prokaryotic) histone like domain SH04_RS01535 SM00387 Histidine kinase-like ATPases SH04_RS01535 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS01540 SM00382 ATPases associated with a variety of cellular activities SH04_RS01540 SM00448 cheY-homologous receiver domain SH04_RS01545 SM01209 SH04_RS01545 SH04_RS01545 SM01210 SH04_RS01545 SH04_RS01550 SM00798 AICARFT/IMPCHase bienzyme SH04_RS01550 SM00851 MGS-like domain SH04_RS01615 SM00248 ankyrin repeats SH04_RS01620 SM00346 helix_turn_helix isocitrate lyase regulation SH04_RS01625 SM01018 B12 binding domain SH04_RS01640 SM00363 S4 RNA-binding domain SH04_RS01730 SM00382 ATPases associated with a variety of cellular activities SH04_RS01765 SM00563 Phosphate acyltransferases SH04_RS01815 SM00829 Enoylreductase SH04_RS01820 SM00382 ATPases associated with a variety of cellular activities SH04_RS01825 SM01005 Alanine racemase, C-terminal domain SH04_RS01870 SM00052 Putative diguanylate phosphodiesterase SH04_RS01875 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS01880 SM00422 helix_turn_helix, mercury resistance SH04_RS01945 SM00028 Tetratricopeptide repeats SH04_RS01955 SM00671 Sel1-like repeats. SH04_RS01965 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS01990 SM00849 Metallo-beta-lactamase superfamily SH04_RS02010 SM00382 ATPases associated with a variety of cellular activities SH04_RS02045 SM00072 Guanylate kinase homologues. SH04_RS02055 SM00382 ATPases associated with a variety of cellular activities SH04_RS02060 SM00382 ATPases associated with a variety of cellular activities SH04_RS02085 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS02085 SM00866 SH04_RS02085 SH04_RS02100 SM00382 ATPases associated with a variety of cellular activities SH04_RS02135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS02135 SM00387 Histidine kinase-like ATPases SH04_RS02135 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS02140 SM00448 cheY-homologous receiver domain SH04_RS02140 SM00862 Transcriptional regulatory protein, C terminal SH04_RS02155 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS02165 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS02205 SM00448 cheY-homologous receiver domain SH04_RS02210 SM00091 PAS domain SH04_RS02210 SM00387 Histidine kinase-like ATPases SH04_RS02255 SM00862 Transcriptional regulatory protein, C terminal SH04_RS02300 SM00883 Chaperonin 10 Kd subunit SH04_RS02325 SM00841 Elongation factor P, C-terminal SH04_RS02325 SM01185 SH04_RS02325 SH04_RS02410 SM00479 SH04_RS02410 SH04_RS02445 SM00646 SH04_RS02445 SH04_RS02450 SM00853 MutL C terminal dimerisation domain SH04_RS02450 SM01340 SH04_RS02450 SH04_RS02470 SM00244 prohibitin homologues SH04_RS02475 SM00244 prohibitin homologues SH04_RS02485 SM00788 Adenylosuccinate synthetase SH04_RS02495 SM00316 Ribosomal protein S1-like RNA-binding domain SH04_RS02495 SM00357 Cold shock protein domain SH04_RS02495 SM00955 SH04_RS02495 SH04_RS02500 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH04_RS02555 SM00420 helix_turn_helix, Deoxyribose operon repressor SH04_RS02555 SM01134 SH04_RS02555 SH04_RS02580 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH04_RS02590 SM01007 Class II Aldolase and Adducin N-terminal domain SH04_RS02695 SM01091 Transporter associated domain SH04_RS02725 SM00966 SpoVT / AbrB like domain SH04_RS02745 SM00382 ATPases associated with a variety of cellular activities SH04_RS02795 SM00642 Alpha-amylase domain SH04_RS02805 SM00354 helix_turn _helix lactose operon repressor SH04_RS02810 SM00831 Cation transporter/ATPase, N-terminus SH04_RS02845 SM00822 SH04_RS02845 SH04_RS02915 SM00354 helix_turn _helix lactose operon repressor SH04_RS02940 SM00829 Enoylreductase SH04_RS03045 SM00382 ATPases associated with a variety of cellular activities SH04_RS03065 SM00965 Secretin and TonB N terminus short domain SH04_RS03115 SM01130 SH04_RS03115 SH04_RS03120 SM00346 helix_turn_helix isocitrate lyase regulation SH04_RS03125 SM00420 helix_turn_helix, Deoxyribose operon repressor SH04_RS03125 SM01134 SH04_RS03125 SH04_RS03290 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS03290 SM00895 SH04_RS03290 SH04_RS03385 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS03410 SM00382 ATPases associated with a variety of cellular activities SH04_RS03430 SM00487 DEAD-like helicases superfamily SH04_RS03430 SM00490 helicase superfamily c-terminal domain SH04_RS03450 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH04_RS03470 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH04_RS03470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS03470 SM00319 Homologues of the ligand binding domain of Tar SH04_RS03480 SM00895 SH04_RS03480 SH04_RS03485 SM00829 Enoylreductase SH04_RS03500 SM00382 ATPases associated with a variety of cellular activities SH04_RS03520 SM00421 helix_turn_helix, Lux Regulon SH04_RS03525 SM00421 helix_turn_helix, Lux Regulon SH04_RS03580 SM00749 bacterial OsmY and nodulation domain SH04_RS03615 SM01133 SH04_RS03615 SH04_RS03620 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SH04_RS03655 SM00382 ATPases associated with a variety of cellular activities SH04_RS03660 SM00530 Helix-turn-helix XRE-family like proteins SH04_RS03670 SM00382 ATPases associated with a variety of cellular activities SH04_RS03690 SM00855 Phosphoglycerate mutase family SH04_RS03695 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS03695 SM00871 Bacterial transcription activator, effector binding domain SH04_RS03705 SM00448 cheY-homologous receiver domain SH04_RS03705 SM00862 Transcriptional regulatory protein, C terminal SH04_RS03710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS03710 SM00387 Histidine kinase-like ATPases SH04_RS03710 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS03720 SM00448 cheY-homologous receiver domain SH04_RS03720 SM00862 Transcriptional regulatory protein, C terminal SH04_RS03780 SM00852 Probable molybdopterin binding domain SH04_RS03805 SM00271 DnaJ molecular chaperone homology domain SH04_RS03845 SM00904 Riboflavin kinase SH04_RS03890 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SH04_RS03895 SM00851 MGS-like domain SH04_RS03895 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SH04_RS03940 SM00893 Electron transfer flavoprotein domain SH04_RS03945 SM00893 Electron transfer flavoprotein domain SH04_RS03990 SM00650 Ribosomal RNA adenine dimethylases SH04_RS04010 SM00271 DnaJ molecular chaperone homology domain SH04_RS04025 SM00487 DEAD-like helicases superfamily SH04_RS04025 SM00490 helicase superfamily c-terminal domain SH04_RS04030 SM00486 DNA polymerase type-B family SH04_RS04035 SM01007 Class II Aldolase and Adducin N-terminal domain SH04_RS04050 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS04060 SM00382 ATPases associated with a variety of cellular activities SH04_RS04100 SM01329 SH04_RS04100 SH04_RS04105 SM00917 LeuA allosteric (dimerisation) domain SH04_RS04135 SM00354 helix_turn _helix lactose operon repressor SH04_RS04205 SM00842 Cell division protein FtsA SH04_RS04210 SM00864 Tubulin/FtsZ family, GTPase domain SH04_RS04210 SM00865 Tubulin/FtsZ family, C-terminal domain SH04_RS04225 SM00957 SecA DEAD-like domain SH04_RS04225 SM00958 SecA preprotein cross-linking domain SH04_RS04255 SM01240 SH04_RS04255 SH04_RS04285 SM00644 SH04_RS04285 SH04_RS04300 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS04300 SM00895 SH04_RS04300 SH04_RS04355 SM00564 beta-propeller repeat SH04_RS04365 SM00947 Carbonic anhydrase SH04_RS04370 SM00382 ATPases associated with a variety of cellular activities SH04_RS04475 SM00487 DEAD-like helicases superfamily SH04_RS04475 SM00490 helicase superfamily c-terminal domain SH04_RS04475 SM00847 Helicase associated domain (HA2) Add an annotation SH04_RS04495 SM00382 ATPases associated with a variety of cellular activities SH04_RS04540 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH04_RS04545 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH04_RS04570 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH04_RS04615 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH04_RS04625 SM00935 Outer membrane protein (OmpH-like) SH04_RS04655 SM00481 DNA polymerase alpha chain like domain SH04_RS04675 SM00977 TilS substrate C-terminal domain SH04_RS04690 SM01322 SH04_RS04690 SH04_RS04735 SM00382 ATPases associated with a variety of cellular activities SH04_RS04735 SM00930 SH04_RS04735 SH04_RS04795 SM00257 Lysin motif SH04_RS04800 SM00849 Metallo-beta-lactamase superfamily SH04_RS04815 SM00479 SH04_RS04815 SH04_RS04890 SM01321 SH04_RS04890 SH04_RS04960 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SH04_RS05075 SM00382 ATPases associated with a variety of cellular activities SH04_RS05110 SM01130 SH04_RS05110 SH04_RS05130 SM00346 helix_turn_helix isocitrate lyase regulation SH04_RS05195 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH04_RS05200 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH04_RS05245 SM00421 helix_turn_helix, Lux Regulon SH04_RS05285 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS05305 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS05360 SM00052 Putative diguanylate phosphodiesterase SH04_RS05360 SM00421 helix_turn_helix, Lux Regulon SH04_RS05375 SM00248 ankyrin repeats SH04_RS05410 SM00829 Enoylreductase SH04_RS05435 SM00382 ATPases associated with a variety of cellular activities SH04_RS05475 SM00947 Carbonic anhydrase SH04_RS05480 SM01116 SH04_RS05480 SH04_RS05490 SM01266 SH04_RS05490 SH04_RS05500 SM01038 Beta galactosidase small chain SH04_RS05510 SM00346 helix_turn_helix isocitrate lyase regulation SH04_RS05535 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH04_RS05560 SM00829 Enoylreductase SH04_RS05600 SM00062 Bacterial periplasmic substrate-binding proteins SH04_RS05605 SM00382 ATPases associated with a variety of cellular activities SH04_RS05620 SM01004 Delta-aminolevulinic acid dehydratase SH04_RS05645 SM00869 Autotransporter beta-domain SH04_RS05700 SM00098 Alkaline phosphatase homologues SH04_RS05710 SM00267 diguanylate cyclase SH04_RS05780 SM00448 cheY-homologous receiver domain SH04_RS05780 SM00862 Transcriptional regulatory protein, C terminal SH04_RS05785 SM00091 PAS domain SH04_RS05785 SM00387 Histidine kinase-like ATPases SH04_RS05785 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS05800 SM00642 Alpha-amylase domain SH04_RS05820 SM01323 SH04_RS05820 SH04_RS05835 SM00507 HNH nucleases SH04_RS05890 SM00861 Transketolase, pyrimidine binding domain SH04_RS05905 SM00981 SH04_RS05905 SH04_RS05985 SM00382 ATPases associated with a variety of cellular activities SH04_RS05985 SM00994 ClpX C4-type zinc finger SH04_RS05985 SM01086 C-terminal, D2-small domain, of ClpB protein SH04_RS05990 SM00382 ATPases associated with a variety of cellular activities SH04_RS05990 SM00464 Found in ATP-dependent protease La (LON) SH04_RS05995 SM00411 bacterial (prokaryotic) histone like domain SH04_RS06005 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH04_RS06030 SM00344 helix_turn_helix ASNC type SH04_RS06035 SM00382 ATPases associated with a variety of cellular activities SH04_RS06040 SM00382 ATPases associated with a variety of cellular activities SH04_RS06045 SM00938 Nitrogen regulatory protein P-II SH04_RS06075 SM00052 Putative diguanylate phosphodiesterase SH04_RS06085 SM01266 SH04_RS06085 SH04_RS06145 SM00382 ATPases associated with a variety of cellular activities SH04_RS06155 SM00493 SH04_RS06155 SH04_RS06160 SM00387 Histidine kinase-like ATPases SH04_RS06210 SM00530 Helix-turn-helix XRE-family like proteins SH04_RS06230 SM00422 helix_turn_helix, mercury resistance SH04_RS06240 SM00244 prohibitin homologues SH04_RS06245 SM00382 ATPases associated with a variety of cellular activities SH04_RS06260 SM00822 SH04_RS06260 SH04_RS06270 SM00382 ATPases associated with a variety of cellular activities SH04_RS06305 SM00450 Rhodanese Homology Domain SH04_RS06320 SM00346 helix_turn_helix isocitrate lyase regulation SH04_RS06400 SM01001 AIR carboxylase SH04_RS06415 SM00840 SH04_RS06415 SH04_RS06460 SM00421 helix_turn_helix, Lux Regulon SH04_RS06460 SM00448 cheY-homologous receiver domain SH04_RS06515 SM00857 Resolvase, N terminal domain SH04_RS06525 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS06640 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS06655 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS06665 SM00028 Tetratricopeptide repeats SH04_RS06675 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS06675 SM00387 Histidine kinase-like ATPases SH04_RS06675 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS06680 SM00448 cheY-homologous receiver domain SH04_RS06680 SM00862 Transcriptional regulatory protein, C terminal SH04_RS06765 SM00923 MbtH-like protein SH04_RS06770 SM00823 Phosphopantetheine attachment site SH04_RS06770 SM00824 Thioesterase SH04_RS06780 SM00382 ATPases associated with a variety of cellular activities SH04_RS06820 SM00822 SH04_RS06820 SH04_RS06850 SM00470 ParB-like nuclease domain SH04_RS06935 SM00764 Citrate lyase ligase C-terminal domain SH04_RS06940 SM00091 PAS domain SH04_RS06940 SM00387 Histidine kinase-like ATPases SH04_RS06945 SM00448 cheY-homologous receiver domain SH04_RS06960 SM00357 Cold shock protein domain SH04_RS06980 SM00729 Elongator protein 3, MiaB family, Radical SAM SH04_RS07005 SM00936 Penicillin-binding protein 5, C-terminal domain SH04_RS07035 SM00855 Phosphoglycerate mutase family SH04_RS07065 SM00671 Sel1-like repeats. SH04_RS07075 SM00271 DnaJ molecular chaperone homology domain SH04_RS07080 SM00671 Sel1-like repeats. SH04_RS07105 SM00382 ATPases associated with a variety of cellular activities SH04_RS07120 SM00062 Bacterial periplasmic substrate-binding proteins SH04_RS07135 SM00116 Domain in cystathionine beta-synthase and other proteins. SH04_RS07135 SM01091 Transporter associated domain SH04_RS07150 SM00729 Elongator protein 3, MiaB family, Radical SAM SH04_RS07310 SM00448 cheY-homologous receiver domain SH04_RS07310 SM00862 Transcriptional regulatory protein, C terminal SH04_RS07315 SM00387 Histidine kinase-like ATPases SH04_RS07315 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS07400 SM00796 Allophanate hydrolase subunit 1 SH04_RS07405 SM00797 Allophanate hydrolase subunit 2 SH04_RS07415 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SH04_RS07415 SM01232 SH04_RS07415 SH04_RS07480 SM00861 Transketolase, pyrimidine binding domain SH04_RS07495 SM00881 CoA binding domain SH04_RS07500 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS07500 SM00866 SH04_RS07500 SH04_RS07510 SM00872 Alpha mannosidase, middle domain SH04_RS07640 SM00855 Phosphoglycerate mutase family SH04_RS07665 SM00382 ATPases associated with a variety of cellular activities SH04_RS07690 SM00382 ATPases associated with a variety of cellular activities SH04_RS07740 SM00729 Elongator protein 3, MiaB family, Radical SAM SH04_RS07740 SM00876 Biotin and Thiamin Synthesis associated domain SH04_RS07760 SM00487 DEAD-like helicases superfamily SH04_RS07760 SM00490 helicase superfamily c-terminal domain SH04_RS07775 SM00729 Elongator protein 3, MiaB family, Radical SAM SH04_RS07780 SM00852 Probable molybdopterin binding domain SH04_RS07815 SM00155 Phospholipase D. Active site motifs. SH04_RS07840 SM00382 ATPases associated with a variety of cellular activities SH04_RS07855 SM00487 DEAD-like helicases superfamily SH04_RS07855 SM00490 helicase superfamily c-terminal domain SH04_RS07865 SM00487 DEAD-like helicases superfamily SH04_RS07865 SM00488 SH04_RS07865 SH04_RS07865 SM00491 SH04_RS07865 SH04_RS07890 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. SH04_RS07915 SM00382 ATPases associated with a variety of cellular activities SH04_RS07925 SM00062 Bacterial periplasmic substrate-binding proteins SH04_RS07925 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH04_RS07960 SM00529 Helix-turn-helix diphteria tox regulatory element SH04_RS07975 SM00382 ATPases associated with a variety of cellular activities SH04_RS08010 SM00852 Probable molybdopterin binding domain SH04_RS08020 SM00382 ATPases associated with a variety of cellular activities SH04_RS08040 SM00052 Putative diguanylate phosphodiesterase SH04_RS08045 SM00267 diguanylate cyclase SH04_RS08050 SM00729 Elongator protein 3, MiaB family, Radical SAM SH04_RS08070 SM00936 Penicillin-binding protein 5, C-terminal domain SH04_RS08075 SM00420 helix_turn_helix, Deoxyribose operon repressor SH04_RS08075 SM01134 SH04_RS08075 SH04_RS08080 SM00014 Acid phosphatase homologues SH04_RS08155 SM00382 ATPases associated with a variety of cellular activities SH04_RS08180 SM00062 Bacterial periplasmic substrate-binding proteins SH04_RS08180 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH04_RS08195 SM00062 Bacterial periplasmic substrate-binding proteins SH04_RS08195 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH04_RS08200 SM00382 ATPases associated with a variety of cellular activities SH04_RS08215 SM00644 SH04_RS08215 SH04_RS08280 SM00382 ATPases associated with a variety of cellular activities SH04_RS08285 SM00357 Cold shock protein domain SH04_RS08295 SM00382 ATPases associated with a variety of cellular activities SH04_RS08295 SM01086 C-terminal, D2-small domain, of ClpB protein SH04_RS08305 SM00316 Ribosomal protein S1-like RNA-binding domain SH04_RS08315 SM00382 ATPases associated with a variety of cellular activities SH04_RS08320 SM00382 ATPases associated with a variety of cellular activities SH04_RS08330 SM00344 helix_turn_helix ASNC type SH04_RS08335 SM00843 SH04_RS08335 SH04_RS08345 SM00382 ATPases associated with a variety of cellular activities SH04_RS08355 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS08440 SM00316 Ribosomal protein S1-like RNA-binding domain SH04_RS08445 SM00411 bacterial (prokaryotic) histone like domain SH04_RS08450 SM00849 Metallo-beta-lactamase superfamily SH04_RS08455 SM00382 ATPases associated with a variety of cellular activities SH04_RS08520 SM00849 Metallo-beta-lactamase superfamily SH04_RS08555 SM00382 ATPases associated with a variety of cellular activities SH04_RS08570 SM00062 Bacterial periplasmic substrate-binding proteins SH04_RS08630 SM00981 SH04_RS08630 SH04_RS08635 SM00382 ATPases associated with a variety of cellular activities SH04_RS08710 SM00851 MGS-like domain SH04_RS08725 SM00881 CoA binding domain SH04_RS08730 SM00992 Hemimethylated DNA-binding protein YccV like SH04_RS08735 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SH04_RS08815 SM00226 Low molecular weight phosphatase family SH04_RS08855 SM00357 Cold shock protein domain SH04_RS08860 SM00357 Cold shock protein domain SH04_RS08880 SM00073 Histidine Phosphotransfer domain SH04_RS08880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS08880 SM00387 Histidine kinase-like ATPases SH04_RS08880 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS08880 SM00448 cheY-homologous receiver domain SH04_RS08890 SM00448 cheY-homologous receiver domain SH04_RS08890 SM00862 Transcriptional regulatory protein, C terminal SH04_RS08915 SM00271 DnaJ molecular chaperone homology domain SH04_RS08955 SM00903 Flavin reductase like domain SH04_RS09050 SM00028 Tetratricopeptide repeats SH04_RS09055 SM00267 diguanylate cyclase SH04_RS09095 SM00481 DNA polymerase alpha chain like domain SH04_RS09125 SM00421 helix_turn_helix, Lux Regulon SH04_RS09155 SM00506 Appr-1"-p processing enzyme SH04_RS09160 SM00155 Phospholipase D. Active site motifs. SH04_RS09215 SM00450 Rhodanese Homology Domain SH04_RS09220 SM00867 YceI-like domain SH04_RS09300 SM00858 SH04_RS09300 SH04_RS09345 SM00047 Lysozyme subfamily 2 SH04_RS09360 SM00316 Ribosomal protein S1-like RNA-binding domain SH04_RS09370 SM00363 S4 RNA-binding domain SH04_RS09400 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SH04_RS09405 SM00822 SH04_RS09405 SH04_RS09415 SM00825 Beta-ketoacyl synthase SH04_RS09505 SM00257 Lysin motif SH04_RS09510 SM00487 DEAD-like helicases superfamily SH04_RS09510 SM00490 helicase superfamily c-terminal domain SH04_RS09510 SM00982 SH04_RS09510 SH04_RS09510 SM01058 CarD-like/TRCF domain SH04_RS09525 SM00382 ATPases associated with a variety of cellular activities SH04_RS09570 SM00382 ATPases associated with a variety of cellular activities SH04_RS09585 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. SH04_RS09590 SM00387 Histidine kinase-like ATPases SH04_RS09595 SM00448 cheY-homologous receiver domain SH04_RS09595 SM00862 Transcriptional regulatory protein, C terminal SH04_RS09625 SM01329 SH04_RS09625 SH04_RS09645 SM00422 helix_turn_helix, mercury resistance SH04_RS09650 SM00052 Putative diguanylate phosphodiesterase SH04_RS09650 SM01034 Sensors of blue-light using FAD SH04_RS09675 SM00052 Putative diguanylate phosphodiesterase SH04_RS09790 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS09805 SM01005 Alanine racemase, C-terminal domain SH04_RS09810 SM01091 Transporter associated domain SH04_RS09850 SM01120 SH04_RS09850 SH04_RS09860 SM00091 PAS domain SH04_RS09860 SM00382 ATPases associated with a variety of cellular activities SH04_RS09865 SM00869 Autotransporter beta-domain SH04_RS09895 SM01400 SH04_RS09895 SH04_RS09915 SM00937 SH04_RS09915 SH04_RS09975 SM00421 helix_turn_helix, Lux Regulon SH04_RS09975 SM00448 cheY-homologous receiver domain SH04_RS09980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS09980 SM00387 Histidine kinase-like ATPases SH04_RS09995 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS10045 SM00448 cheY-homologous receiver domain SH04_RS10055 SM00528 Domain in histone-like proteins of HNS family SH04_RS10100 SM00382 ATPases associated with a variety of cellular activities SH04_RS10105 SM00382 ATPases associated with a variety of cellular activities SH04_RS10115 SM00155 Phospholipase D. Active site motifs. SH04_RS10200 SM00481 DNA polymerase alpha chain like domain SH04_RS10215 SM00363 S4 RNA-binding domain SH04_RS10225 SM00822 SH04_RS10225 SH04_RS10250 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH04_RS10250 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH04_RS10250 SM00493 SH04_RS10250 SH04_RS10285 SM00014 Acid phosphatase homologues SH04_RS10295 SM00028 Tetratricopeptide repeats SH04_RS10300 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH04_RS10315 SM00420 helix_turn_helix, Deoxyribose operon repressor SH04_RS10315 SM01134 SH04_RS10315 SH04_RS10325 SM00052 Putative diguanylate phosphodiesterase SH04_RS10325 SM00091 PAS domain SH04_RS10325 SM00267 diguanylate cyclase SH04_RS10335 SM00357 Cold shock protein domain SH04_RS10335 SM00955 SH04_RS10335 SH04_RS10355 SM00382 ATPases associated with a variety of cellular activities SH04_RS10360 SM00382 ATPases associated with a variety of cellular activities SH04_RS10395 SM01230 SH04_RS10395 SH04_RS10405 SM00530 Helix-turn-helix XRE-family like proteins SH04_RS10425 SM00382 ATPases associated with a variety of cellular activities SH04_RS10450 SM00450 Rhodanese Homology Domain SH04_RS10455 SM00642 Alpha-amylase domain SH04_RS10510 SM00354 helix_turn _helix lactose operon repressor SH04_RS10525 SM00091 PAS domain SH04_RS10525 SM00382 ATPases associated with a variety of cellular activities SH04_RS10535 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH04_RS10590 SM00100 Cyclic nucleotide-monophosphate binding domain SH04_RS10590 SM00419 helix_turn_helix, cAMP Regulatory protein SH04_RS10630 SM00463 Small MutS-related domain SH04_RS10635 SM00091 PAS domain SH04_RS10635 SM00267 diguanylate cyclase SH04_RS10650 SM00487 DEAD-like helicases superfamily SH04_RS10650 SM00490 helicase superfamily c-terminal domain SH04_RS10750 SM00470 ParB-like nuclease domain SH04_RS10805 SM00857 Resolvase, N terminal domain SH04_RS10825 SM00890 Domain of unknown function SH04_RS10860 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS10995 SM00195 Dual specificity phosphatase, catalytic domain SH04_RS10995 SM00404 Protein tyrosine phosphatase, catalytic domain motif SH04_RS11005 SM00382 ATPases associated with a variety of cellular activities SH04_RS11005 SM00487 DEAD-like helicases superfamily SH04_RS11005 SM00490 helicase superfamily c-terminal domain SH04_RS11005 SM00847 Helicase associated domain (HA2) Add an annotation SH04_RS11050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH04_RS11050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS11050 SM00319 Homologues of the ligand binding domain of Tar SH04_RS11060 SM01150 SH04_RS11060 SH04_RS11110 SM01321 SH04_RS11110 SH04_RS11125 SM00530 Helix-turn-helix XRE-family like proteins SH04_RS11145 SM00530 Helix-turn-helix XRE-family like proteins SH04_RS11150 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS11160 SM00382 ATPases associated with a variety of cellular activities SH04_RS11205 SM00829 Enoylreductase SH04_RS11210 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS11210 SM00895 SH04_RS11210 SH04_RS11265 SM00903 Flavin reductase like domain SH04_RS11295 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS11320 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS11340 SM00530 Helix-turn-helix XRE-family like proteins SH04_RS11345 SM00829 Enoylreductase SH04_RS11350 SM00919 Malic enzyme, NAD binding domain SH04_RS11350 SM01274 SH04_RS11350 SH04_RS11370 SM00382 ATPases associated with a variety of cellular activities SH04_RS11375 SM00382 ATPases associated with a variety of cellular activities SH04_RS11400 SM00052 Putative diguanylate phosphodiesterase SH04_RS11400 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH04_RS11400 SM00091 PAS domain SH04_RS11400 SM00267 diguanylate cyclase SH04_RS11405 SM00267 diguanylate cyclase SH04_RS11440 SM00382 ATPases associated with a variety of cellular activities SH04_RS11455 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS11500 SM00530 Helix-turn-helix XRE-family like proteins SH04_RS11505 SM00869 Autotransporter beta-domain SH04_RS11525 SM00382 ATPases associated with a variety of cellular activities SH04_RS11545 SM01133 SH04_RS11545 SH04_RS11575 SM00267 diguanylate cyclase SH04_RS11615 SM00347 helix_turn_helix multiple antibiotic resistance protein SH04_RS11620 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS11645 SM00267 diguanylate cyclase SH04_RS11670 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS11670 SM00895 SH04_RS11670 SH04_RS11695 SM00857 Resolvase, N terminal domain SH04_RS11735 SM00357 Cold shock protein domain SH04_RS11760 SM00357 Cold shock protein domain SH04_RS11765 SM00357 Cold shock protein domain SH04_RS11775 SM00507 HNH nucleases SH04_RS11820 SM00530 Helix-turn-helix XRE-family like proteins SH04_RS11870 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH04_RS11900 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS11905 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS11985 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SH04_RS11985 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SH04_RS12010 SM00448 cheY-homologous receiver domain SH04_RS12010 SM00862 Transcriptional regulatory protein, C terminal SH04_RS12015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS12015 SM00387 Histidine kinase-like ATPases SH04_RS12015 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS12070 SM00354 helix_turn _helix lactose operon repressor SH04_RS12130 SM00900 SH04_RS12130 SH04_RS12140 SM00478 endonuclease III SH04_RS12140 SM00525 SH04_RS12140 SH04_RS12165 SM00363 S4 RNA-binding domain SH04_RS12190 SM00347 helix_turn_helix multiple antibiotic resistance protein SH04_RS12240 SM00479 SH04_RS12240 SH04_RS12245 SM00382 ATPases associated with a variety of cellular activities SH04_RS12245 SM00487 DEAD-like helicases superfamily SH04_RS12245 SM00490 helicase superfamily c-terminal domain SH04_RS12275 SM00354 helix_turn _helix lactose operon repressor SH04_RS12350 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain SH04_RS12375 SM00257 Lysin motif SH04_RS12395 SM00382 ATPases associated with a variety of cellular activities SH04_RS12455 SM00882 Coenzyme A transferase SH04_RS12465 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS12475 SM00893 Electron transfer flavoprotein domain SH04_RS12480 SM00893 Electron transfer flavoprotein domain SH04_RS12555 SM00411 bacterial (prokaryotic) histone like domain SH04_RS12560 SM00873 B3/4 domain SH04_RS12560 SM00874 tRNA synthetase B5 domain SH04_RS12560 SM00896 Ferredoxin-fold anticodon binding domain SH04_RS12590 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH04_RS12655 SM01060 SH04_RS12655 SH04_RS12670 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS12705 SM00465 GIY-YIG type nucleases (URI domain) SH04_RS12780 SM00382 ATPases associated with a variety of cellular activities SH04_RS12785 SM00450 Rhodanese Homology Domain SH04_RS12805 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SH04_RS12815 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH04_RS12815 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH04_RS12815 SM00493 SH04_RS12815 SH04_RS12845 SM00870 SH04_RS12845 SH04_RS12860 SM00420 helix_turn_helix, Deoxyribose operon repressor SH04_RS12860 SM01134 SH04_RS12860 SH04_RS12880 SM00829 Enoylreductase SH04_RS12905 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH04_RS12925 SM00763 PrkA AAA domain SH04_RS12935 SM00267 diguanylate cyclase SH04_RS12940 SM00267 diguanylate cyclase SH04_RS12960 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS12980 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH04_RS12980 SM00267 diguanylate cyclase SH04_RS13015 SM01329 SH04_RS13015 SH04_RS13035 SM00341 Helicase and RNase D C-terminal SH04_RS13035 SM00474 3'-5' exonuclease SH04_RS13055 SM00487 DEAD-like helicases superfamily SH04_RS13055 SM00491 SH04_RS13055 SH04_RS13090 SM00052 Putative diguanylate phosphodiesterase SH04_RS13095 SM01091 Transporter associated domain SH04_RS13140 SM00357 Cold shock protein domain SH04_RS13170 SM00346 helix_turn_helix isocitrate lyase regulation SH04_RS13185 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH04_RS13185 SM00245 tail specific protease SH04_RS13190 SM00945 ProQ/FINO family SH04_RS13195 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH04_RS13260 SM00479 SH04_RS13260 SH04_RS13330 SM00257 Lysin motif SH04_RS13340 SM00382 ATPases associated with a variety of cellular activities SH04_RS13350 SM00382 ATPases associated with a variety of cellular activities SH04_RS13355 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH04_RS13430 SM00836 DALR anticodon binding domain SH04_RS13430 SM01016 Arginyl tRNA synthetase N terminal dom SH04_RS13460 SM00448 cheY-homologous receiver domain SH04_RS13465 SM00448 cheY-homologous receiver domain SH04_RS13470 SM00138 Methyltransferase, chemotaxis proteins SH04_RS13475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH04_RS13475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS13475 SM00319 Homologues of the ligand binding domain of Tar SH04_RS13480 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH04_RS13480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS13480 SM00319 Homologues of the ligand binding domain of Tar SH04_RS13485 SM00260 Two component signalling adaptor domain SH04_RS13490 SM00073 Histidine Phosphotransfer domain SH04_RS13490 SM00260 Two component signalling adaptor domain SH04_RS13490 SM00387 Histidine kinase-like ATPases SH04_RS13490 SM01231 SH04_RS13490 SH04_RS13535 SM00382 ATPases associated with a variety of cellular activities SH04_RS13605 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH04_RS13605 SM00465 GIY-YIG type nucleases (URI domain) SH04_RS13610 SM00421 helix_turn_helix, Lux Regulon SH04_RS13610 SM00448 cheY-homologous receiver domain SH04_RS13625 SM00421 helix_turn_helix, Lux Regulon SH04_RS13630 SM00382 ATPases associated with a variety of cellular activities SH04_RS13645 SM00062 Bacterial periplasmic substrate-binding proteins SH04_RS13645 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH04_RS13680 SM00642 Alpha-amylase domain SH04_RS13745 SM00382 ATPases associated with a variety of cellular activities SH04_RS13795 SM00421 helix_turn_helix, Lux Regulon SH04_RS13815 SM00267 diguanylate cyclase SH04_RS13845 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH04_RS13875 SM00387 Histidine kinase-like ATPases SH04_RS13875 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS13880 SM00448 cheY-homologous receiver domain SH04_RS13880 SM00862 Transcriptional regulatory protein, C terminal SH04_RS13885 SM00095 Transthyretin SH04_RS13930 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins SH04_RS13930 SM00634 Bacterial Ig-like domain (group 1) SH04_RS14040 SM00869 Autotransporter beta-domain SH04_RS14095 SM00871 Bacterial transcription activator, effector binding domain SH04_RS14100 SM00936 Penicillin-binding protein 5, C-terminal domain SH04_RS14105 SM00479 SH04_RS14105 SH04_RS14190 SM00984 UDP binding domain SH04_RS14195 SM01350 SH04_RS14195 SH04_RS14355 SM00226 Low molecular weight phosphatase family SH04_RS14365 SM00116 Domain in cystathionine beta-synthase and other proteins. SH04_RS14365 SM01091 Transporter associated domain SH04_RS14385 SM00052 Putative diguanylate phosphodiesterase SH04_RS14385 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH04_RS14385 SM00091 PAS domain SH04_RS14385 SM00267 diguanylate cyclase SH04_RS14390 SM00478 endonuclease III SH04_RS14390 SM01009 AlkA N-terminal domain SH04_RS14420 SM00327 von Willebrand factor (vWF) type A domain SH04_RS14445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS14445 SM00387 Histidine kinase-like ATPases SH04_RS14445 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS14450 SM00448 cheY-homologous receiver domain SH04_RS14450 SM00862 Transcriptional regulatory protein, C terminal SH04_RS14480 SM00046 Diacylglycerol kinase catalytic domain (presumed) SH04_RS14485 SM01134 SH04_RS14485 SH04_RS14500 SM00420 helix_turn_helix, Deoxyribose operon repressor SH04_RS14505 SM00829 Enoylreductase SH04_RS14535 SM01133 SH04_RS14535 SH04_RS14555 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS14555 SM00866 SH04_RS14555 SH04_RS14560 SM00641 Glycosyl hydrolases family 25 SH04_RS14630 SM00773 Proposed nucleic acid binding domain SH04_RS14650 SM00382 ATPases associated with a variety of cellular activities SH04_RS14660 SM00327 von Willebrand factor (vWF) type A domain SH04_RS14680 SM00448 cheY-homologous receiver domain SH04_RS14680 SM00850 LytTr DNA-binding domain SH04_RS14685 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH04_RS14690 SM00422 helix_turn_helix, mercury resistance SH04_RS14705 SM00382 ATPases associated with a variety of cellular activities SH04_RS14720 SM01217 SH04_RS14720 SH04_RS14820 SM00354 helix_turn _helix lactose operon repressor SH04_RS14870 SM00518 AP endonuclease family 2 SH04_RS14890 SM00100 Cyclic nucleotide-monophosphate binding domain SH04_RS14935 SM00841 Elongation factor P, C-terminal SH04_RS14935 SM01185 SH04_RS14935 SH04_RS14945 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH04_RS14950 SM00014 Acid phosphatase homologues SH04_RS14960 SM00052 Putative diguanylate phosphodiesterase SH04_RS14980 SM00382 ATPases associated with a variety of cellular activities SH04_RS14995 SM00363 S4 RNA-binding domain SH04_RS15000 SM00487 DEAD-like helicases superfamily SH04_RS15000 SM00490 helicase superfamily c-terminal domain SH04_RS15030 SM00869 Autotransporter beta-domain SH04_RS15045 SM00421 helix_turn_helix, Lux Regulon SH04_RS15045 SM00448 cheY-homologous receiver domain SH04_RS15085 SM00382 ATPases associated with a variety of cellular activities SH04_RS15110 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS15140 SM00382 ATPases associated with a variety of cellular activities SH04_RS15150 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS15175 SM00387 Histidine kinase-like ATPases SH04_RS15180 SM00421 helix_turn_helix, Lux Regulon SH04_RS15180 SM00448 cheY-homologous receiver domain SH04_RS15185 SM00387 Histidine kinase-like ATPases SH04_RS15185 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS15185 SM00448 cheY-homologous receiver domain SH04_RS15190 SM00091 PAS domain SH04_RS15190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS15190 SM00387 Histidine kinase-like ATPases SH04_RS15190 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS15195 SM00382 ATPases associated with a variety of cellular activities SH04_RS15195 SM00448 cheY-homologous receiver domain SH04_RS15200 SM00882 Coenzyme A transferase SH04_RS15205 SM00882 Coenzyme A transferase SH04_RS15235 SM01359 SH04_RS15235 SH04_RS15235 SM01360 SH04_RS15235 SH04_RS15250 SM00434 DNA Topoisomerase IV SH04_RS15260 SM00869 Autotransporter beta-domain SH04_RS15345 SM00346 helix_turn_helix isocitrate lyase regulation SH04_RS15350 SM00852 Probable molybdopterin binding domain SH04_RS15415 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH04_RS15450 SM00849 Metallo-beta-lactamase superfamily SH04_RS15460 SM00327 von Willebrand factor (vWF) type A domain SH04_RS15525 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH04_RS15525 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SH04_RS15530 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SH04_RS15565 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH04_RS15630 SM00905 Dihydroneopterin aldolase SH04_RS15645 SM00382 ATPases associated with a variety of cellular activities SH04_RS15660 SM00062 Bacterial periplasmic substrate-binding proteins SH04_RS15665 SM00062 Bacterial periplasmic substrate-binding proteins SH04_RS15710 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH04_RS15730 SM00825 Beta-ketoacyl synthase SH04_RS15770 SM00463 Small MutS-related domain SH04_RS15965 SM00421 helix_turn_helix, Lux Regulon SH04_RS15965 SM00448 cheY-homologous receiver domain SH04_RS15970 SM00062 Bacterial periplasmic substrate-binding proteins SH04_RS15970 SM00073 Histidine Phosphotransfer domain SH04_RS15970 SM00387 Histidine kinase-like ATPases SH04_RS15970 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS15970 SM00448 cheY-homologous receiver domain SH04_RS16025 SM00387 Histidine kinase-like ATPases SH04_RS16030 SM00448 cheY-homologous receiver domain SH04_RS16030 SM00850 LytTr DNA-binding domain SH04_RS16035 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS16100 SM00052 Putative diguanylate phosphodiesterase SH04_RS16100 SM00267 diguanylate cyclase SH04_RS16190 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH04_RS16190 SM00292 breast cancer carboxy-terminal domain SH04_RS16190 SM00532 Ligase N family SH04_RS16195 SM00771 ZipA, C-terminal domain (FtsZ-binding) SH04_RS16235 SM00773 Proposed nucleic acid binding domain SH04_RS16245 SM00382 ATPases associated with a variety of cellular activities SH04_RS16265 SM00822 SH04_RS16265 SH04_RS16310 SM00646 SH04_RS16310 SH04_RS16320 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS16325 SM00877 SH04_RS16325 SH04_RS16330 SM00877 SH04_RS16330 SH04_RS16375 SM00877 SH04_RS16375 SH04_RS16400 SM00877 SH04_RS16400 SH04_RS16405 SM00919 Malic enzyme, NAD binding domain SH04_RS16405 SM01274 SH04_RS16405 SH04_RS16415 SM00861 Transketolase, pyrimidine binding domain SH04_RS16435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS16435 SM00387 Histidine kinase-like ATPases SH04_RS16495 SM01130 SH04_RS16495 SH04_RS16560 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH04_RS16560 SM00382 ATPases associated with a variety of cellular activities SH04_RS16620 SM00052 Putative diguanylate phosphodiesterase SH04_RS16620 SM00267 diguanylate cyclase SH04_RS16650 SM00116 Domain in cystathionine beta-synthase and other proteins. SH04_RS16650 SM01240 SH04_RS16650 SH04_RS16670 SM00564 beta-propeller repeat SH04_RS16690 SM00530 Helix-turn-helix XRE-family like proteins SH04_RS16700 SM00562 SH04_RS16700 SH04_RS16710 SM01359 SH04_RS16710 SH04_RS16710 SM01360 SH04_RS16710 SH04_RS16715 SM00450 Rhodanese Homology Domain SH04_RS16745 SM00271 DnaJ molecular chaperone homology domain SH04_RS16835 SM00829 Enoylreductase SH04_RS16845 SM00382 ATPases associated with a variety of cellular activities SH04_RS16855 SM00028 Tetratricopeptide repeats SH04_RS16875 SM00938 Nitrogen regulatory protein P-II SH04_RS16880 SM00382 ATPases associated with a variety of cellular activities SH04_RS16880 SM00448 cheY-homologous receiver domain SH04_RS16890 SM00387 Histidine kinase-like ATPases SH04_RS16890 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS16895 SM01211 SH04_RS16895 SH04_RS16900 SM00062 Bacterial periplasmic substrate-binding proteins SH04_RS16960 SM00358 Double-stranded RNA binding motif SH04_RS16960 SM00535 Ribonuclease III family SH04_RS17010 SM00487 DEAD-like helicases superfamily SH04_RS17010 SM00490 helicase superfamily c-terminal domain SH04_RS17035 SM00986 Uracil DNA glycosylase superfamily SH04_RS17035 SM00987 UreE urease accessory protein, C-terminal domain SH04_RS17040 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH04_RS17055 SM01144 SH04_RS17055 SH04_RS17060 SM00881 CoA binding domain SH04_RS17065 SM00155 Phospholipase D. Active site motifs. SH04_RS17105 SM00382 ATPases associated with a variety of cellular activities SH04_RS17105 SM01086 C-terminal, D2-small domain, of ClpB protein SH04_RS17115 SM00363 S4 RNA-binding domain SH04_RS17135 SM00830 Chorismate mutase type II SH04_RS17140 SM00830 Chorismate mutase type II SH04_RS17160 SM00267 diguanylate cyclase SH04_RS17190 SM00382 ATPases associated with a variety of cellular activities SH04_RS17190 SM00962 SRP54-type protein, GTPase domain SH04_RS17190 SM00963 SRP54-type protein, helical bundle domain SH04_RS17200 SM01091 Transporter associated domain SH04_RS17270 SM00487 DEAD-like helicases superfamily SH04_RS17270 SM00490 helicase superfamily c-terminal domain SH04_RS17435 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS17435 SM00895 SH04_RS17435 SH04_RS17440 SM00257 Lysin motif SH04_RS17440 SM00749 bacterial OsmY and nodulation domain SH04_RS17450 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH04_RS17455 SM00450 Rhodanese Homology Domain SH04_RS17460 SM00528 Domain in histone-like proteins of HNS family SH04_RS17500 SM00382 ATPases associated with a variety of cellular activities SH04_RS17530 SM00347 helix_turn_helix multiple antibiotic resistance protein SH04_RS17600 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH04_RS17625 SM01059 Chloramphenicol acetyltransferase SH04_RS17665 SM00420 helix_turn_helix, Deoxyribose operon repressor SH04_RS17665 SM01134 SH04_RS17665 SH04_RS17675 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH04_RS17675 SM00382 ATPases associated with a variety of cellular activities SH04_RS17680 SM00849 Metallo-beta-lactamase superfamily SH04_RS17700 SM00354 helix_turn _helix lactose operon repressor SH04_RS17790 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH04_RS17790 SM00382 ATPases associated with a variety of cellular activities SH04_RS17800 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SH04_RS17800 SM00534 ATPase domain of DNA mismatch repair MUTS family SH04_RS17810 SM00420 helix_turn_helix, Deoxyribose operon repressor SH04_RS17810 SM01134 SH04_RS17810 SH04_RS17825 SM01007 Class II Aldolase and Adducin N-terminal domain SH04_RS17845 SM00257 Lysin motif SH04_RS17915 SM01101 SH04_RS17915 SH04_RS17940 SM00487 DEAD-like helicases superfamily SH04_RS17940 SM00490 helicase superfamily c-terminal domain SH04_RS17985 SM00893 Electron transfer flavoprotein domain SH04_RS18030 SM01192 SH04_RS18030 SH04_RS18030 SM01193 SH04_RS18030 SH04_RS18050 SM00966 SpoVT / AbrB like domain SH04_RS18055 SM00954 Region found in RelA / SpoT proteins SH04_RS18065 SM00073 Histidine Phosphotransfer domain SH04_RS18065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS18065 SM00387 Histidine kinase-like ATPases SH04_RS18065 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS18065 SM00448 cheY-homologous receiver domain SH04_RS18070 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH04_RS18075 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH04_RS18130 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH04_RS18130 SM00475 5'-3' exonuclease SH04_RS18140 SM01007 Class II Aldolase and Adducin N-terminal domain SH04_RS18165 SM00420 helix_turn_helix, Deoxyribose operon repressor SH04_RS18165 SM01134 SH04_RS18165 SH04_RS18205 SM00925 MltA specific insert domain SH04_RS18225 SM00646 SH04_RS18225 SH04_RS18285 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH04_RS18305 SM00927 DNA mismatch repair enzyme MutH SH04_RS18330 SM00563 Phosphate acyltransferases SH04_RS18335 SM00354 helix_turn _helix lactose operon repressor SH04_RS18385 SM00862 Transcriptional regulatory protein, C terminal SH04_RS18410 SM00028 Tetratricopeptide repeats SH04_RS18410 SM00862 Transcriptional regulatory protein, C terminal SH04_RS18425 SM00421 helix_turn_helix, Lux Regulon SH04_RS18475 SM00257 Lysin motif SH04_RS18480 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH04_RS18485 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH04_RS18495 SM00091 PAS domain SH04_RS18495 SM00382 ATPases associated with a variety of cellular activities SH04_RS18550 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH04_RS18555 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH04_RS18610 SM00937 SH04_RS18610 SH04_RS18655 SM01022 SH04_RS18655 SH04_RS18695 SM01011 Aminopeptidase P, N-terminal domain SH04_RS18785 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH04_RS18820 SM00861 Transketolase, pyrimidine binding domain SH04_RS18865 SM00731 SprT homologues. SH04_RS18890 SM00732 Likely ribonuclease with RNase H fold. SH04_RS18895 SM00382 ATPases associated with a variety of cellular activities SH04_RS18910 SM01152 SH04_RS18910 SH04_RS18920 SM00729 Elongator protein 3, MiaB family, Radical SAM SH04_RS18930 SM00870 SH04_RS18930 SH04_RS18955 SM00478 endonuclease III SH04_RS18955 SM00525 SH04_RS18955 SH04_RS19015 SM01276 SH04_RS19015 SH04_RS19055 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS19055 SM00895 SH04_RS19055 SH04_RS19200 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS19230 SM00729 Elongator protein 3, MiaB family, Radical SAM SH04_RS19240 SM00563 Phosphate acyltransferases SH04_RS19245 SM00434 DNA Topoisomerase IV SH04_RS19255 SM00530 Helix-turn-helix XRE-family like proteins SH04_RS19265 SM00871 Bacterial transcription activator, effector binding domain SH04_RS19275 SM00448 cheY-homologous receiver domain SH04_RS19275 SM00862 Transcriptional regulatory protein, C terminal SH04_RS19280 SM00387 Histidine kinase-like ATPases SH04_RS19280 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS19300 SM00387 Histidine kinase-like ATPases SH04_RS19300 SM00433 TopoisomeraseII SH04_RS19410 SM00244 prohibitin homologues SH04_RS19435 SM01118 SH04_RS19435 SH04_RS19445 SM00287 Bacterial SH3 domain homologues SH04_RS19460 SM00905 Dihydroneopterin aldolase SH04_RS19465 SM01207 SH04_RS19465 SH04_RS19500 SM00400 zinc finger SH04_RS19500 SM00493 SH04_RS19500 SH04_RS19500 SM00766 DNA primase DnaG DnaB-binding SH04_RS19530 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH04_RS19530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH04_RS19545 SM00354 helix_turn _helix lactose operon repressor SH04_RS19550 SM01038 Beta galactosidase small chain SH04_RS19580 SM00530 Helix-turn-helix XRE-family like proteins SH04_RS19630 SM00858 SH04_RS19630 SH04_RS19645 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS19645 SM00895 SH04_RS19645 SH04_RS19805 SM00858 SH04_RS19805 SH04_RS19820 SM00420 helix_turn_helix, Deoxyribose operon repressor SH04_RS19820 SM01134 SH04_RS19820 SH04_RS19915 SM00749 bacterial OsmY and nodulation domain SH04_RS19925 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH04_RS19940 SM00465 GIY-YIG type nucleases (URI domain) SH04_RS19980 SM00487 DEAD-like helicases superfamily SH04_RS19980 SM00490 helicase superfamily c-terminal domain SH04_RS19985 SM00028 Tetratricopeptide repeats SH04_RS19990 SM00316 Ribosomal protein S1-like RNA-binding domain SH04_RS19990 SM00322 K homology RNA-binding domain SH04_RS19995 SM01387 SH04_RS19995 SH04_RS20015 SM00316 Ribosomal protein S1-like RNA-binding domain SH04_RS20060 SM00382 ATPases associated with a variety of cellular activities SH04_RS20070 SM01103 SH04_RS20070 SH04_RS20145 SM00382 ATPases associated with a variety of cellular activities SH04_RS20175 SM00382 ATPases associated with a variety of cellular activities SH04_RS20250 SM01130 SH04_RS20250 SH04_RS20255 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS20255 SM00895 SH04_RS20255 SH04_RS20295 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH04_RS20300 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH04_RS20355 SM00316 Ribosomal protein S1-like RNA-binding domain SH04_RS20385 SM00052 Putative diguanylate phosphodiesterase SH04_RS20385 SM00267 diguanylate cyclase SH04_RS20390 SM00829 Enoylreductase SH04_RS20415 SM00878 Biotin carboxylase C-terminal domain SH04_RS20480 SM00062 Bacterial periplasmic substrate-binding proteins SH04_RS20495 SM00382 ATPases associated with a variety of cellular activities SH04_RS20600 SM00422 helix_turn_helix, mercury resistance SH04_RS20615 SM00662 RNA polymerases D SH04_RS20620 SM00363 S4 RNA-binding domain SH04_RS20620 SM01390 SH04_RS20620 SH04_RS20685 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH04_RS20690 SM01374 SH04_RS20690 SH04_RS20710 SM00322 K homology RNA-binding domain SH04_RS20725 SM01382 SH04_RS20725 SH04_RS20725 SM01383 SH04_RS20725 SH04_RS20745 SM01403 SH04_RS20745 SH04_RS20770 SM00382 ATPases associated with a variety of cellular activities SH04_RS20830 SM00495 Chitin-binding domain type 3 SH04_RS20840 SM00838 Elongation factor G C-terminus SH04_RS20840 SM00889 Elongation factor G, domain IV SH04_RS20905 SM00382 ATPases associated with a variety of cellular activities SH04_RS20935 SM00100 Cyclic nucleotide-monophosphate binding domain SH04_RS20935 SM00419 helix_turn_helix, cAMP Regulatory protein SH04_RS21020 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS21020 SM00866 SH04_RS21020 SH04_RS21100 SM00965 Secretin and TonB N terminus short domain SH04_RS21145 SM00363 S4 RNA-binding domain SH04_RS21170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH04_RS21170 SM00387 Histidine kinase-like ATPases SH04_RS21170 SM00388 His Kinase A (phosphoacceptor) domain SH04_RS21175 SM00448 cheY-homologous receiver domain SH04_RS21175 SM00862 Transcriptional regulatory protein, C terminal SH04_RS21185 SM00316 Ribosomal protein S1-like RNA-binding domain SH04_RS21185 SM00732 Likely ribonuclease with RNase H fold. SH04_RS21190 SM00899 SH04_RS21190 SH04_RS21240 SM00421 helix_turn_helix, Lux Regulon SH04_RS21255 SM00382 ATPases associated with a variety of cellular activities SH04_RS21260 SM00420 helix_turn_helix, Deoxyribose operon repressor SH04_RS21260 SM01134 SH04_RS21260 SH04_RS21270 SM00450 Rhodanese Homology Domain SH04_RS21300 SM00642 Alpha-amylase domain SH04_RS21305 SM00642 Alpha-amylase domain SH04_RS21310 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH04_RS21330 SM00354 helix_turn _helix lactose operon repressor SH04_RS21385 SM00382 ATPases associated with a variety of cellular activities SH04_RS21410 SM00382 ATPases associated with a variety of cellular activities SH04_RS21415 SM00382 ATPases associated with a variety of cellular activities SH04_RS21460 SM00382 ATPases associated with a variety of cellular activities SH04_RS21465 SM00382 ATPases associated with a variety of cellular activities SH04_RS21465 SM00962 SRP54-type protein, GTPase domain SH04_RS21465 SM00963 SRP54-type protein, helical bundle domain SH04_RS21540 SM00382 ATPases associated with a variety of cellular activities SH04_RS21545 SM00382 ATPases associated with a variety of cellular activities SH04_RS21580 SM00382 ATPases associated with a variety of cellular activities SH04_RS21670 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH04_RS21705 SM00421 helix_turn_helix, Lux Regulon SH04_RS21750 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS21755 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS21765 SM01235 SH04_RS21765 SH04_RS21775 SM00421 helix_turn_helix, Lux Regulon SH04_RS21800 SM00052 Putative diguanylate phosphodiesterase SH04_RS21825 SM00052 Putative diguanylate phosphodiesterase SH04_RS21825 SM00267 diguanylate cyclase SH04_RS21830 SM00028 Tetratricopeptide repeats SH04_RS21895 SM00382 ATPases associated with a variety of cellular activities SH04_RS21900 SM00382 ATPases associated with a variety of cellular activities SH04_RS21980 SM00530 Helix-turn-helix XRE-family like proteins SH04_RS21985 SM00357 Cold shock protein domain SH04_RS22060 SM00382 ATPases associated with a variety of cellular activities SH04_RS22070 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS22075 SM00047 Lysozyme subfamily 2 SH04_RS22080 SM00642 Alpha-amylase domain SH04_RS22100 SM00346 helix_turn_helix isocitrate lyase regulation SH04_RS22135 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH04_RS22145 SM01007 Class II Aldolase and Adducin N-terminal domain SH04_RS22265 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS22265 SM00895 SH04_RS22265 SH04_RS22280 SM00971 Serine acetyltransferase, N-terminal SH04_RS22300 SM00450 Rhodanese Homology Domain SH04_RS22330 SM00829 Enoylreductase SH04_RS22425 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SH04_RS22425 SM01232 SH04_RS22425 SH04_RS22485 SM00532 Ligase N family SH04_RS22490 SM00072 Guanylate kinase homologues. SH04_RS22495 SM01409 SH04_RS22495 SH04_RS22500 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH04_RS22500 SM00954 Region found in RelA / SpoT proteins SH04_RS22510 SM00487 DEAD-like helicases superfamily SH04_RS22510 SM00490 helicase superfamily c-terminal domain SH04_RS22605 SM00387 Histidine kinase-like ATPases SH04_RS22610 SM00421 helix_turn_helix, Lux Regulon SH04_RS22610 SM00448 cheY-homologous receiver domain SH04_RS22680 SM00342 helix_turn_helix, arabinose operon control protein SH04_RS22700 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS22700 SM00866 SH04_RS22700 SH04_RS22740 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH04_RS22755 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH04_RS22755 SM00895 SH04_RS22755 SH04_RS22780 SM00387 Histidine kinase-like ATPases SH04_RS22780 SM00433 TopoisomeraseII SH04_RS22790 SM00480 DNA polymerase III beta subunit SH04_RS22795 SM00382 ATPases associated with a variety of cellular activities SH04_RS22795 SM00760 Bacterial dnaA protein helix-turn-helix domain