##gff-version 3 #!gff-spec-version 1.21 #!processor NCBI annotwriter #!genome-build ASM97482v1 #!genome-build-accession NCBI_Assembly:GCF_000974825.1 ##sequence-region NZ_CP010443.1 1 4606859 ##species http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 NZ_CP010443.1 RefSeq region 1 4606859 . + . ID=id0;Dbxref=taxon:83333;Is_circular=true;Name=ANONYMOUS;gbkey=Src;genome=chromosome;genotype=supQ80? _(hisG)1 e14- (McrA-) gyrA96 recA::cat(FRT)(CmR) recD1014 rpsL104(StrR) xyl-7 mtlA2(Fs) metB1(FS) mrr::tetAR;identified-by=Anthony Kingston;mol_type=genomic DNA;strain=K-12 MG1655 NZ_CP010443.1 RefSeq gene 607 747 . + . ID=gene0;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=SH04_RS00005;old_locus_tag=SH04_00005 NZ_CP010443.1 Protein Homology CDS 607 747 . + 0 ID=cds0;Parent=gene0;Dbxref=Genbank:WP_000831330.1;Name=WP_000831330.1;Note=in Escherichia coli transcription of this gene is enhanced by polyamines;gbkey=CDS;gene=rpmH;product=50S ribosomal protein L34;protein_id=WP_000831330.1;transl_table=11 NZ_CP010443.1 RefSeq gene 764 1123 . + . ID=gene1;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=SH04_RS00010;old_locus_tag=SH04_00010 NZ_CP010443.1 Protein Homology CDS 764 1123 . + 0 ID=cds1;Parent=gene1;Dbxref=Genbank:WP_000239730.1;Name=WP_000239730.1;Note=protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus%3B this enzyme also cleaves other RNA substrates;gbkey=CDS;gene=rnpA;product=ribonuclease P protein component;protein_id=WP_000239730.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1087 1344 . + . ID=gene2;Name=SH04_RS00015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00015;old_locus_tag=SH04_00015 NZ_CP010443.1 Protein Homology CDS 1087 1344 . + 0 ID=cds2;Parent=gene2;Dbxref=Genbank:WP_001307474.1;Name=WP_001307474.1;gbkey=CDS;product=membrane protein insertion efficiency factor YidD;protein_id=WP_001307474.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1347 2993 . + . ID=gene3;Name=SH04_RS00020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00020;old_locus_tag=SH04_00020 NZ_CP010443.1 Protein Homology CDS 1347 2993 . + 0 ID=cds3;Parent=gene3;Dbxref=Genbank:WP_000378250.1;Name=WP_000378250.1;Note=functions to insert inner membrane proteins into the IM in Escherichia coli%3B interacts with transmembrane segments%3B functions in both Sec-dependent and -independent membrane insertion%3B similar to Oxa1p in mitochondria;gbkey=CDS;product=protein translocase component YidC;protein_id=WP_000378250.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3099 4463 . + . ID=gene4;Name=trmE;gbkey=Gene;gene=trmE;gene_biotype=protein_coding;gene_synonym=mnmE,thdF;locus_tag=SH04_RS00025;old_locus_tag=SH04_00025 NZ_CP010443.1 Protein Homology CDS 3099 4463 . + 0 ID=cds4;Parent=gene4;Dbxref=Genbank:WP_001282346.1;Name=WP_001282346.1;Note=in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine%2C which is found in the wobble position of some tRNAs and affects ribosomal frameshifting%3B shows potassium-dependent dimerization and GTP hydrolysis%3B also involved in regulation of glutamate-dependent acid resistance and activation of gadE;gbkey=CDS;gene=trmE;product=tRNA modification GTPase MnmE;protein_id=WP_001282346.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4706 4780 . + . ID=gene5;Name=SH04_RS00030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00030;old_locus_tag=SH04_00030 NZ_CP010443.1 Protein Homology CDS 4706 4780 . + 0 ID=cds5;Parent=gene5;Dbxref=Genbank:WP_001364348.1;Name=WP_001364348.1;gbkey=CDS;product=tryptophanase leader peptide;protein_id=WP_001364348.1;transl_table=11 NZ_CP010443.1 RefSeq gene 5001 6416 . + . ID=gene6;Name=tnaA;gbkey=Gene;gene=tnaA;gene_biotype=protein_coding;locus_tag=SH04_RS00035;old_locus_tag=SH04_00035 NZ_CP010443.1 Protein Homology CDS 5001 6416 . + 0 ID=cds6;Parent=gene6;Dbxref=Genbank:WP_001295247.1;Name=WP_001295247.1;Note=tryptophan indole-lyase%3B catalyzes the formation of indole and pyruvate from tryptophan%3B also has xysteine desulfhydrase activity;gbkey=CDS;gene=tnaA;product=tryptophanase;protein_id=WP_001295247.1;transl_table=11 NZ_CP010443.1 RefSeq gene 6507 7754 . + . ID=gene7;Name=SH04_RS00040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00040;old_locus_tag=SH04_00040 NZ_CP010443.1 Protein Homology CDS 6507 7754 . + 0 ID=cds7;Parent=gene7;Dbxref=Genbank:WP_000131925.1;Name=WP_000131925.1;Note=tryptophan transporter of high affinity;gbkey=CDS;product=low affinity tryptophan permease;protein_id=WP_000131925.1;transl_table=11 NZ_CP010443.1 RefSeq gene 7886 9061 . + . ID=gene8;Name=SH04_RS00045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00045;old_locus_tag=SH04_00045 NZ_CP010443.1 Protein Homology CDS 7886 9061 . + 0 ID=cds8;Parent=gene8;Dbxref=Genbank:WP_000085982.1;Name=WP_000085982.1;Note=Confers resistance to chloramphenicol;gbkey=CDS;product=multidrug resistance protein MdtL;protein_id=WP_000085982.1;transl_table=11 NZ_CP010443.1 RefSeq gene 9036 9995 . + . ID=gene9;Name=SH04_RS00050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00050;old_locus_tag=SH04_00050 NZ_CP010443.1 Protein Homology CDS 9036 9995 . + 0 ID=cds9;Parent=gene9;Dbxref=Genbank:WP_001311238.1;Name=WP_001311238.1;Note=Involved in anaerobic NO protection;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001311238.1;transl_table=11 NZ_CP010443.1 RefSeq gene 10152 10901 . + . ID=gene10;Name=SH04_RS00055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00055;old_locus_tag=SH04_00055 NZ_CP010443.1 Protein Homology CDS 10152 10901 . + 0 ID=cds10;Parent=gene10;Dbxref=Genbank:WP_001296581.1;Name=WP_001296581.1;gbkey=CDS;product=4'-phosphopantetheinyl transferase;protein_id=WP_001296581.1;transl_table=11 NZ_CP010443.1 RefSeq gene 10923 11489 . + . ID=gene11;Name=SH04_RS00060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00060;old_locus_tag=SH04_00060 NZ_CP010443.1 Protein Homology CDS 10923 11489 . + 0 ID=cds11;Parent=gene11;Dbxref=Genbank:WP_001291268.1;Name=WP_001291268.1;gbkey=CDS;product=chromate reductase;protein_id=WP_001291268.1;transl_table=11 NZ_CP010443.1 RefSeq gene 11543 12880 . - . ID=gene12;Name=SH04_RS00065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00065;old_locus_tag=SH04_00065 NZ_CP010443.1 Protein Homology CDS 11543 12880 . - 0 ID=cds12;Parent=gene12;Dbxref=Genbank:WP_000019348.1;Name=WP_000019348.1;Note=involved in the transport or adenine;gbkey=CDS;product=adenine permease AdeP;protein_id=WP_000019348.1;transl_table=11 NZ_CP010443.1 RefSeq gene 13045 13710 . + . ID=gene13;Name=SH04_RS00070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00070;old_locus_tag=SH04_00070 NZ_CP010443.1 Protein Homology CDS 13045 13710 . + 0 ID=cds13;Parent=gene13;Dbxref=Genbank:WP_000086486.1;Name=WP_000086486.1;Note=YieH%3B catalyzes the dephosphorylation of phosphoenolpyruvate%2C AMP and p-nitrophenyl phosphate%3B purine and pyrimidine nucleotides are secondary substrates%3B member of the haloacid dehalogenase-like hydrolases superfamily;gbkey=CDS;product=6-phosphogluconate phosphatase;protein_id=WP_000086486.1;transl_table=11 NZ_CP010443.1 RefSeq gene 13777 14244 . + . ID=gene14;Name=SH04_RS00075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00075;old_locus_tag=SH04_00075 NZ_CP010443.1 Protein Homology CDS 13777 14244 . + 0 ID=cds14;Parent=gene14;Dbxref=Genbank:WP_000116777.1;Name=WP_000116777.1;Note=might be involved in hypersensitivity to nitrofurzone;gbkey=CDS;product=protein CbrB;protein_id=WP_000116777.1;transl_table=11 NZ_CP010443.1 RefSeq gene 14293 14880 . + . ID=gene15;Name=SH04_RS00080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00080;old_locus_tag=SH04_00080 NZ_CP010443.1 Protein Homology CDS 14293 14880 . + 0 ID=cds15;Parent=gene15;Dbxref=Genbank:WP_000193072.1;Name=WP_000193072.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000193072.1;transl_table=11 NZ_CP010443.1 RefSeq gene 14942 15664 . - . ID=gene16;Name=SH04_RS00085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00085;old_locus_tag=SH04_00085 NZ_CP010443.1 Protein Homology CDS 14942 15664 . - 0 ID=cds16;Parent=gene16;Dbxref=Genbank:WP_038432707.1;Name=WP_038432707.1;gbkey=CDS;product=6-phosphogluconolactonase;protein_id=WP_038432707.1;transl_table=11 NZ_CP010443.1 RefSeq gene 15679 16848 . - . ID=gene17;Name=SH04_RS00090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00090;old_locus_tag=SH04_00090 NZ_CP010443.1 Protein Homology CDS 15679 16848 . - 0 ID=cds17;Parent=gene17;Dbxref=Genbank:WP_001336377.1;Name=WP_001336377.1;gbkey=CDS;product=xylanase;protein_id=WP_001336377.1;transl_table=11 NZ_CP010443.1 RefSeq gene 16875 18491 . - . ID=gene18;Name=SH04_RS00095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00095;old_locus_tag=SH04_00095 NZ_CP010443.1 Protein Homology CDS 16875 18491 . - 0 ID=cds18;Parent=gene18;Dbxref=Genbank:WP_000489881.1;Name=WP_000489881.1;gbkey=CDS;product=porin BglH;protein_id=WP_000489881.1;transl_table=11 NZ_CP010443.1 RefSeq gene 18560 19972 . - . ID=gene19;Name=SH04_RS00100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00100;old_locus_tag=SH04_00100 NZ_CP010443.1 Protein Homology CDS 18560 19972 . - 0 ID=cds19;Parent=gene19;Dbxref=Genbank:WP_000643228.1;Name=WP_000643228.1;gbkey=CDS;product=6-phospho-beta-glucosidase BglB;protein_id=WP_000643228.1;transl_table=11 NZ_CP010443.1 RefSeq gene 19991 21868 . - . ID=gene20;Name=SH04_RS00105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00105;old_locus_tag=SH04_00105 NZ_CP010443.1 Protein Homology CDS 19991 21868 . - 0 ID=cds20;Parent=gene20;Dbxref=Genbank:WP_000137296.1;Name=WP_000137296.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS beta-glucoside EIIBCA component;protein_id=WP_000137296.1;transl_table=11 NZ_CP010443.1 RefSeq gene 22002 22838 . - . ID=gene21;Name=SH04_RS00110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00110;old_locus_tag=SH04_00110 NZ_CP010443.1 Protein Homology CDS 22002 22838 . - 0 ID=cds21;Parent=gene21;Dbxref=Genbank:WP_001295251.1;Name=WP_001295251.1;Note=positive regulator of the beta-glucoside operon%3B transcriptional antiterminator;gbkey=CDS;product=cryptic beta-glucoside bgl operon antiterminator;protein_id=WP_001295251.1;transl_table=11 NZ_CP010443.1 RefSeq gene 23124 23849 . - . ID=gene22;Name=SH04_RS00115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00115;old_locus_tag=SH04_00115 NZ_CP010443.1 Protein Homology CDS 23124 23849 . - 0 ID=cds22;Parent=gene22;Dbxref=Genbank:WP_000377786.1;Name=WP_000377786.1;Note=regulates several genes involved in high affinity phosphate uptake%3B under conditions of high phosphate concentrations downregulates the PHO regulon;gbkey=CDS;product=phosphate-specific transport system accessory protein PhoU;protein_id=WP_000377786.1;transl_table=11 NZ_CP010443.1 RefSeq gene 23864 24637 . - . ID=gene23;Name=SH04_RS00120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00120;old_locus_tag=SH04_00120 NZ_CP010443.1 Protein Homology CDS 23864 24637 . - 0 ID=cds23;Parent=gene23;Dbxref=Genbank:WP_000063125.1;Name=WP_000063125.1;gbkey=CDS;product=phosphate import ATP-binding protein PstB;protein_id=WP_000063125.1;transl_table=11 NZ_CP010443.1 RefSeq gene 24820 25710 . - . ID=gene24;Name=pstA;gbkey=Gene;gene=pstA;gene_biotype=protein_coding;locus_tag=SH04_RS00125;old_locus_tag=SH04_00125 NZ_CP010443.1 Protein Homology CDS 24820 25710 . - 0 ID=cds24;Parent=gene24;Dbxref=Genbank:WP_001251998.1;Name=WP_001251998.1;Note=Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions;gbkey=CDS;gene=pstA;product=phosphate ABC transporter permease;protein_id=WP_001251998.1;transl_table=11 NZ_CP010443.1 RefSeq gene 25710 26669 . - . ID=gene25;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=SH04_RS00130;old_locus_tag=SH04_00130 NZ_CP010443.1 Protein Homology CDS 25710 26669 . - 0 ID=cds25;Parent=gene25;Dbxref=Genbank:WP_000741620.1;Name=WP_000741620.1;Note=part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions;gbkey=CDS;gene=pstC;product=phosphate ABC transporter permease;protein_id=WP_000741620.1;transl_table=11 NZ_CP010443.1 RefSeq gene 26756 27796 . - . ID=gene26;Name=SH04_RS00135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00135;old_locus_tag=SH04_00135 NZ_CP010443.1 Protein Homology CDS 26756 27796 . - 0 ID=cds26;Parent=gene26;Dbxref=Genbank:WP_000867146.1;Name=WP_000867146.1;gbkey=CDS;product=phosphate-binding protein;protein_id=WP_000867146.1;transl_table=11 NZ_CP010443.1 RefSeq gene 28110 29939 . - . ID=gene27;Name=SH04_RS00140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00140;old_locus_tag=SH04_00140 NZ_CP010443.1 Protein Homology CDS 28110 29939 . - 0 ID=cds27;Parent=gene27;Dbxref=Genbank:WP_000334099.1;Name=WP_000334099.1;Note=Catalyzes the first step in hexosamine metabolism%2C converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source;gbkey=CDS;product=glutamine--fructose-6-phosphate aminotransferase [isomerizing];protein_id=WP_000334099.1;transl_table=11 NZ_CP010443.1 RefSeq gene 30101 31471 . - . ID=gene28;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=SH04_RS00145;old_locus_tag=SH04_00145 NZ_CP010443.1 Protein Homology CDS 30101 31471 . - 0 ID=cds28;Parent=gene28;Dbxref=Genbank:WP_000933736.1;Name=WP_000933736.1;Note=forms a homotrimer%3B catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc%3B function in cell wall synthesis;gbkey=CDS;gene=glmU;product=bifunctional protein GlmU;protein_id=WP_000933736.1;transl_table=11 NZ_CP010443.1 RefSeq gene 31824 32243 . - . ID=gene29;Name=atpC;gbkey=Gene;gene=atpC;gene_biotype=protein_coding;locus_tag=SH04_RS00150;old_locus_tag=SH04_00150 NZ_CP010443.1 Protein Homology CDS 31824 32243 . - 0 ID=cds29;Parent=gene29;Dbxref=Genbank:WP_001251965.1;Name=WP_001251965.1;Note=part of catalytic core of ATP synthase%3B alpha(3)beta(3)gamma(1)delta(1)epsilon(1)%3B involved in producing ATP from ADP in the presence of the proton motive force across the membrane;gbkey=CDS;gene=atpC;product=ATP synthase epsilon chain;protein_id=WP_001251965.1;transl_table=11 NZ_CP010443.1 RefSeq gene 32264 33646 . - . ID=gene30;Name=SH04_RS00155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00155;old_locus_tag=SH04_00155 NZ_CP010443.1 Protein Homology CDS 32264 33646 . - 0 ID=cds30;Parent=gene30;Dbxref=Genbank:WP_000190506.1;Name=WP_000190506.1;gbkey=CDS;product=ATP synthase subunit beta;protein_id=WP_000190506.1;transl_table=11 NZ_CP010443.1 RefSeq gene 33673 34536 . - . ID=gene31;Name=SH04_RS00160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00160;old_locus_tag=SH04_00160 NZ_CP010443.1 Protein Homology CDS 33673 34536 . - 0 ID=cds31;Parent=gene31;Dbxref=Genbank:WP_000896498.1;Name=WP_000896498.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit;gbkey=CDS;product=ATP synthase subunit gamma;protein_id=WP_000896498.1;transl_table=11 NZ_CP010443.1 RefSeq gene 34587 36128 . - . ID=gene32;Name=SH04_RS00165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00165;old_locus_tag=SH04_00165 NZ_CP010443.1 Protein Homology CDS 34587 36128 . - 0 ID=cds32;Parent=gene32;Dbxref=Genbank:WP_001176745.1;Name=WP_001176745.1;Note=produces ATP from ADP in the presence of a proton gradient across the membrane%3B the alpha chain is a catalytic subunit;gbkey=CDS;product=ATP synthase subunit alpha;protein_id=WP_001176745.1;transl_table=11 NZ_CP010443.1 RefSeq gene 36141 36674 . - . ID=gene33;Name=SH04_RS00170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00170;old_locus_tag=SH04_00170 NZ_CP010443.1 Protein Homology CDS 36141 36674 . - 0 ID=cds33;Parent=gene33;Dbxref=Genbank:WP_001288587.1;Name=WP_001288587.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane%3B the delta subunit is part of the catalytic core of the ATP synthase complex;gbkey=CDS;product=ATP synthase subunit delta;protein_id=WP_001288587.1;transl_table=11 NZ_CP010443.1 RefSeq gene 36689 37159 . - . ID=gene34;Name=SH04_RS00175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00175;old_locus_tag=SH04_00175 NZ_CP010443.1 Protein Homology CDS 36689 37159 . - 0 ID=cds34;Parent=gene34;Dbxref=Genbank:WP_001052219.1;Name=WP_001052219.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.;gbkey=CDS;product=ATP synthase subunit b;protein_id=WP_001052219.1;transl_table=11 NZ_CP010443.1 RefSeq gene 37221 37460 . - . ID=gene35;Name=SH04_RS00180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00180;old_locus_tag=SH04_00180 NZ_CP010443.1 Protein Homology CDS 37221 37460 . - 0 ID=cds35;Parent=gene35;Dbxref=Genbank:WP_000429386.1;Name=WP_000429386.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0;gbkey=CDS;product=ATP synthase subunit c;protein_id=WP_000429386.1;transl_table=11 NZ_CP010443.1 RefSeq gene 37507 38322 . - . ID=gene36;Name=SH04_RS00185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00185;old_locus_tag=SH04_00185 NZ_CP010443.1 Protein Homology CDS 37507 38322 . - 0 ID=cds36;Parent=gene36;Dbxref=Genbank:WP_000135625.1;Name=WP_000135625.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0;gbkey=CDS;product=ATP synthase subunit a;protein_id=WP_000135625.1;transl_table=11 NZ_CP010443.1 RefSeq gene 38331 38711 . - . ID=gene37;Name=SH04_RS00190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00190;old_locus_tag=SH04_00190 NZ_CP010443.1 Protein Homology CDS 38331 38711 . - 0 ID=cds37;Parent=gene37;Dbxref=Genbank:WP_000116695.1;Name=WP_000116695.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation;gbkey=CDS;product=ATP synthase I;protein_id=WP_000116695.1;transl_table=11 NZ_CP010443.1 RefSeq gene 39328 39951 . - . ID=gene38;Name=gidB;gbkey=Gene;gene=gidB;gene_biotype=protein_coding;locus_tag=SH04_RS00195;old_locus_tag=SH04_00195 NZ_CP010443.1 Protein Homology CDS 39328 39951 . - 0 ID=cds38;Parent=gene38;Dbxref=Genbank:WP_000932839.1;Name=WP_000932839.1;Note=glucose-inhibited division protein B%3B SAM-dependent methyltransferase%3B methylates the N7 position of guanosine in position 527 of 16S rRNA;gbkey=CDS;gene=gidB;product=ribosomal RNA small subunit methyltransferase G;protein_id=WP_000932839.1;transl_table=11 NZ_CP010443.1 RefSeq gene 40015 41904 . - . ID=gene39;Name=gidA;gbkey=Gene;gene=gidA;gene_biotype=protein_coding;locus_tag=SH04_RS00200;old_locus_tag=SH04_00200 NZ_CP010443.1 Protein Homology CDS 40015 41904 . - 0 ID=cds39;Parent=gene39;Dbxref=Genbank:WP_000499788.1;Name=WP_000499788.1;Note=GidA%3B glucose-inhibited cell division protein A%3B involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs;gbkey=CDS;gene=gidA;product=tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG;protein_id=WP_000499788.1;transl_table=11 NZ_CP010443.1 RefSeq gene 42283 42726 . - . ID=gene40;Name=SH04_RS00205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00205;old_locus_tag=SH04_00205 NZ_CP010443.1 Protein Homology CDS 42283 42726 . - 0 ID=cds40;Parent=gene40;Dbxref=Genbank:WP_000763724.1;Name=WP_000763724.1;Note=An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group;gbkey=CDS;product=protein MioC;protein_id=WP_000763724.1;transl_table=11 NZ_CP010443.1 RefSeq gene 42816 43274 . - . ID=gene41;Name=SH04_RS00210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00210;old_locus_tag=SH04_00210 NZ_CP010443.1 Protein Homology CDS 42816 43274 . - 0 ID=cds41;Parent=gene41;Dbxref=Genbank:WP_000432970.1;Name=WP_000432970.1;Note=transcriptional repressor of asnA which codes for aspartate-ammonia ligase;gbkey=CDS;product=AsnC family transcriptional regulator;protein_id=WP_000432970.1;transl_table=11 NZ_CP010443.1 RefSeq gene 43426 44418 . + . ID=gene42;Name=SH04_RS00215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00215;old_locus_tag=SH04_00215 NZ_CP010443.1 Protein Homology CDS 43426 44418 . + 0 ID=cds42;Parent=gene42;Dbxref=Genbank:WP_000845104.1;Name=WP_000845104.1;Note=catalyzes the formation of asparagine from aspartate and ammonia;gbkey=CDS;product=aspartate--ammonia ligase;protein_id=WP_000845104.1;transl_table=11 NZ_CP010443.1 RefSeq gene 44423 45874 . - . ID=gene43;Name=SH04_RS00220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00220;old_locus_tag=SH04_00220 NZ_CP010443.1 Protein Homology CDS 44423 45874 . - 0 ID=cds43;Parent=gene43;Dbxref=Genbank:WP_000956642.1;Name=WP_000956642.1;Note=contains a von Willibrand factor type A domain%3B stimulates the ATPase activity of RavA;gbkey=CDS;product=protein ViaA;protein_id=WP_000956642.1;transl_table=11 NZ_CP010443.1 RefSeq gene 45868 47364 . - . ID=gene44;Name=SH04_RS00225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00225;old_locus_tag=SH04_00225 NZ_CP010443.1 Protein Homology CDS 45868 47364 . - 0 ID=cds44;Parent=gene44;Dbxref=Genbank:WP_001299914.1;Name=WP_001299914.1;Note=interacts with LdcI%2C lysine decarboxylase%3B may be active in late log/ early stationary phase;gbkey=CDS;product=ATPase RavA;protein_id=WP_001299914.1;transl_table=11 NZ_CP010443.1 RefSeq gene 47587 49455 . + . ID=gene45;Name=trkD;gbkey=Gene;gene=trkD;gene_biotype=protein_coding;locus_tag=SH04_RS00230;old_locus_tag=SH04_00230 NZ_CP010443.1 Protein Homology CDS 47587 49455 . + 0 ID=cds45;Parent=gene45;Dbxref=Genbank:WP_000102319.1;Name=WP_000102319.1;Note=Responsible for the low-affinity transport of potassium into the cell%3B involved in potassium ion uptake under hyper-osmotic stress at a low pH;gbkey=CDS;gene=trkD;product=low affinity potassium transport system protein kup;protein_id=WP_000102319.1;transl_table=11 NZ_CP010443.1 RefSeq gene 49622 50041 . + . ID=gene46;Name=SH04_RS00235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00235;old_locus_tag=SH04_00235 NZ_CP010443.1 Protein Homology CDS 49622 50041 . + 0 ID=cds46;Parent=gene46;Dbxref=Genbank:WP_001301979.1;Name=WP_001301979.1;Note=cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose%3B RbsD is required for efficient ribose utilization in E. coli%3B rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source;gbkey=CDS;product=D-ribose pyranase;protein_id=WP_001301979.1;transl_table=11 NZ_CP010443.1 RefSeq gene 50049 51554 . + . ID=gene47;Name=SH04_RS00240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00240;old_locus_tag=SH04_00240 NZ_CP010443.1 Protein Homology CDS 50049 51554 . + 0 ID=cds47;Parent=gene47;Dbxref=Genbank:WP_000387770.1;Name=WP_000387770.1;gbkey=CDS;product=ribose import ATP-binding protein RbsA;protein_id=WP_000387770.1;transl_table=11 NZ_CP010443.1 RefSeq gene 51559 52524 . + . ID=gene48;Name=rbsC;gbkey=Gene;gene=rbsC;gene_biotype=protein_coding;locus_tag=SH04_RS00245;old_locus_tag=SH04_00245 NZ_CP010443.1 Protein Homology CDS 51559 52524 . + 0 ID=cds48;Parent=gene48;Dbxref=Genbank:WP_000211858.1;Name=WP_000211858.1;Note=functions to transport ribose at high affinity%3B forms a complex with RbsA2C2B;gbkey=CDS;gene=rbsC;product=ribose ABC transporter permease;protein_id=WP_000211858.1;transl_table=11 NZ_CP010443.1 RefSeq gene 52549 53439 . + . ID=gene49;Name=SH04_RS00250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00250;old_locus_tag=SH04_00250 NZ_CP010443.1 Protein Homology CDS 52549 53439 . + 0 ID=cds49;Parent=gene49;Dbxref=Genbank:WP_001056271.1;Name=WP_001056271.1;Note=periplasmic substrate-binding component of the ATP-dependent ribose transport system;gbkey=CDS;product=D-ribose-binding periplasmic protein;protein_id=WP_001056271.1;transl_table=11 NZ_CP010443.1 RefSeq gene 53565 54494 . + . ID=gene50;Name=SH04_RS00255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00255;old_locus_tag=SH04_00255 NZ_CP010443.1 Protein Homology CDS 53565 54494 . + 0 ID=cds50;Parent=gene50;Dbxref=Genbank:WP_001300603.1;Name=WP_001300603.1;Note=catalyzes the formation of D-ribose 5-phosphate from ribose;gbkey=CDS;product=ribokinase;protein_id=WP_001300603.1;transl_table=11 NZ_CP010443.1 RefSeq gene 54507 55490 . + . ID=gene51;Name=SH04_RS00260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00260;old_locus_tag=SH04_00260 NZ_CP010443.1 Protein Homology CDS 54507 55490 . + 0 ID=cds51;Parent=gene51;Dbxref=Genbank:WP_001296587.1;Name=WP_001296587.1;Note=binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis%3B is involved in regulation of purB%2C purC%2C purEK%2C purHD%2C purL%2C purMN and guaBA expression%3B binds hypoxanthine and guanine as inducers;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_001296587.1;transl_table=11 NZ_CP010443.1 RefSeq gene 55456 56883 . - . ID=gene52;Name=SH04_RS00265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00265;old_locus_tag=SH04_00265 NZ_CP010443.1 Protein Homology CDS 55456 56883 . - 0 ID=cds52;Parent=gene52;Dbxref=Genbank:WP_001280852.1;Name=WP_001280852.1;gbkey=CDS;product=transporter HsrA;protein_id=WP_001280852.1;transl_table=11 NZ_CP010443.1 RefSeq gene 56906 57598 . - . ID=gene53;Name=SH04_RS00270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00270;old_locus_tag=SH04_00270 NZ_CP010443.1 Protein Homology CDS 56906 57598 . - 0 ID=cds53;Parent=gene53;Dbxref=Genbank:WP_001131164.1;Name=WP_001131164.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001131164.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 57713 63220 . + . ID=id1;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 58077 59632 . + . ID=gene54;Name=SH04_RS00275;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS00275;old_locus_tag=SH04_00275 NZ_CP010443.1 RefSeq rRNA 58077 59632 . + . ID=rna0;Parent=gene54;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010443.1 RefSeq exon 58077 59632 . + . ID=id2;Parent=rna0;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010443.1 RefSeq gene 59706 59781 . + . ID=gene55;Name=SH04_RS00280;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS00280;old_locus_tag=SH04_00280 NZ_CP010443.1 tRNAscan-SE tRNA 59706 59781 . + . ID=rna1;Parent=gene55;anticodon=(pos:59740..59742);gbkey=tRNA;product=tRNA-Glu NZ_CP010443.1 tRNAscan-SE exon 59706 59781 . + . ID=id3;Parent=rna1;anticodon=(pos:59740..59742);gbkey=tRNA;product=tRNA-Glu NZ_CP010443.1 RefSeq gene 59966 62890 . + . ID=gene56;Name=SH04_RS00285;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS00285;old_locus_tag=SH04_00285 NZ_CP010443.1 RefSeq rRNA 59966 62890 . + . ID=rna2;Parent=gene56;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010443.1 RefSeq exon 59966 62890 . + . ID=id4;Parent=rna2;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010443.1 RefSeq gene 62973 63088 . + . ID=gene57;Name=SH04_RS00290;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS00290;old_locus_tag=SH04_00290 NZ_CP010443.1 cmsearch rRNA 62973 63088 . + . ID=rna3;Parent=gene57;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 cmsearch exon 62973 63088 . + . ID=id5;Parent=rna3;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 RefSeq gene 63143 63219 . + . ID=gene58;Name=SH04_RS00295;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS00295;old_locus_tag=SH04_00295 NZ_CP010443.1 tRNAscan-SE tRNA 63143 63219 . + . ID=rna4;Parent=gene58;anticodon=(pos:63177..63179);gbkey=tRNA;product=tRNA-Asp NZ_CP010443.1 tRNAscan-SE exon 63143 63219 . + . ID=id6;Parent=rna4;anticodon=(pos:63177..63179);gbkey=tRNA;product=tRNA-Asp NZ_CP010443.1 RefSeq gene 63228 63303 . + . ID=gene59;Name=SH04_RS00300;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS00300;old_locus_tag=SH04_00300 NZ_CP010443.1 tRNAscan-SE tRNA 63228 63303 . + . ID=rna5;Parent=gene59;anticodon=(pos:63261..63263);gbkey=tRNA;product=tRNA-Trp NZ_CP010443.1 tRNAscan-SE exon 63228 63303 . + . ID=id7;Parent=rna5;anticodon=(pos:63261..63263);gbkey=tRNA;product=tRNA-Trp NZ_CP010443.1 RefSeq gene 63399 64238 . - . ID=gene60;Name=SH04_RS00305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00305;old_locus_tag=SH04_00305 NZ_CP010443.1 Protein Homology CDS 63399 64238 . - 0 ID=cds54;Parent=gene60;Dbxref=Genbank:WP_000379245.1;Name=WP_000379245.1;Note=Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000379245.1;transl_table=11 NZ_CP010443.1 RefSeq gene 64357 64695 . + . ID=gene61;Name=SH04_RS00310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00310;old_locus_tag=SH04_00310 NZ_CP010443.1 Protein Homology CDS 64357 64695 . + 0 ID=cds55;Parent=gene61;Dbxref=Genbank:WP_000841001.1;Name=WP_000841001.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000841001.1;transl_table=11 NZ_CP010443.1 RefSeq gene 64720 66240 . - . ID=gene62;Name=SH04_RS00315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00315;old_locus_tag=SH04_00315 NZ_CP010443.1 Protein Homology CDS 64720 66240 . - 0 ID=cds56;Parent=gene62;Dbxref=Genbank:WP_000058964.1;Name=WP_000058964.1;Note=among the AAA+ ATPases%2C the YifB protease family belongs to the Helix 2 insert clade%3B unknown function;gbkey=CDS;product=magnesium chelatase and transcriptional regulator;protein_id=WP_000058964.1;transl_table=11 NZ_CP010443.1 RefSeq gene 66593 66691 . + . ID=gene63;Name=SH04_RS00320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00320;old_locus_tag=SH04_00320 NZ_CP010443.1 Protein Homology CDS 66593 66691 . + 0 ID=cds57;Parent=gene63;Dbxref=Genbank:WP_001311244.1;Name=WP_001311244.1;gbkey=CDS;product=IlvGMEDA operon leader peptide;protein_id=WP_001311244.1;transl_table=11 NZ_CP010443.1 RefSeq gene 66831 68475 . + . ID=gene64;Name=SH04_RS00325;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS00325;pseudo=true NZ_CP010443.1 Protein Homology CDS 66831 68475 . + 0 ID=cds58;Parent=gene64;Note=catalyzes the formation of 2-acetolactate from pyruvate%3B also known as acetolactate synthase large subunit;exception=annotated by transcript or proteomic data;gbkey=CDS;product=acetolactate synthase catalytic subunit;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 68472 68735 . + . ID=gene65;Name=ilvM;gbkey=Gene;gene=ilvM;gene_biotype=protein_coding;locus_tag=SH04_RS00330;old_locus_tag=SH04_00330 NZ_CP010443.1 Protein Homology CDS 68472 68735 . + 0 ID=cds59;Parent=gene65;Dbxref=Genbank:WP_000983255.1;Name=WP_000983255.1;gbkey=CDS;gene=ilvM;product=acetolactate synthase isozyme 2 small subunit;protein_id=WP_000983255.1;transl_table=11 NZ_CP010443.1 RefSeq gene 68755 69684 . + . ID=gene66;Name=SH04_RS00335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00335;old_locus_tag=SH04_00335 NZ_CP010443.1 Protein Homology CDS 68755 69684 . + 0 ID=cds60;Parent=gene66;Dbxref=Genbank:WP_000208520.1;Name=WP_000208520.1;gbkey=CDS;product=branched-chain-amino-acid aminotransferase;protein_id=WP_000208520.1;transl_table=11 NZ_CP010443.1 RefSeq gene 69749 71599 . + . ID=gene67;Name=SH04_RS00340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00340;old_locus_tag=SH04_00340 NZ_CP010443.1 Protein Homology CDS 69749 71599 . + 0 ID=cds61;Parent=gene67;Dbxref=Genbank:WP_001127399.1;Name=WP_001127399.1;Note=catalyzes the dehydration of 2%2C3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis;gbkey=CDS;product=dihydroxy-acid dehydratase;protein_id=WP_001127399.1;transl_table=11 NZ_CP010443.1 RefSeq gene 71602 73146 . + . ID=gene68;Name=SH04_RS00345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00345;old_locus_tag=SH04_00345 NZ_CP010443.1 Protein Homology CDS 71602 73146 . + 0 ID=cds62;Parent=gene68;Dbxref=Genbank:WP_000785596.1;Name=WP_000785596.1;Note=threonine deaminase%3B threonine dehydratase%3B in Escherichia coli%2C IlvA is part of the isoleucine biosynthetic pathway;gbkey=CDS;product=L-threonine dehydratase biosynthetic IlvA;protein_id=WP_000785596.1;transl_table=11 NZ_CP010443.1 RefSeq gene 73198 74091 . - . ID=gene69;Name=SH04_RS00350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00350;old_locus_tag=SH04_00350 NZ_CP010443.1 Protein Homology CDS 73198 74091 . - 0 ID=cds63;Parent=gene69;Dbxref=Genbank:WP_000365791.1;Name=WP_000365791.1;Note=participates in controlling several genes involved in isoleucine and valine biosynthesis%3B activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000365791.1;transl_table=11 NZ_CP010443.1 RefSeq gene 74241 75716 . + . ID=gene70;Name=SH04_RS00355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00355;old_locus_tag=SH04_00355 NZ_CP010443.1 Protein Homology CDS 74241 75716 . + 0 ID=cds64;Parent=gene70;Dbxref=Genbank:WP_000024939.1;Name=WP_000024939.1;Note=catalyzes the formation of (R)-2%2C3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis;gbkey=CDS;product=ketol-acid reductoisomerase;protein_id=WP_000024939.1;transl_table=11 NZ_CP010443.1 RefSeq gene 75803 76084 . - . ID=gene71;Name=SH04_RS00360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00360;old_locus_tag=SH04_00360 NZ_CP010443.1 Protein Homology CDS 75803 76084 . - 0 ID=cds65;Parent=gene71;Dbxref=Genbank:WP_001140251.1;Name=WP_001140251.1;Note=rotamase C%3B accelerates isomerization of the peptidyl prolyl bond;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_001140251.1;transl_table=11 NZ_CP010443.1 RefSeq gene 76283 76731 . - . ID=gene72;Name=SH04_RS00365;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS00365;pseudo=true NZ_CP010443.1 Protein Homology CDS 76283 76731 . - 0 ID=cds66;Parent=gene72;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 76948 78969 . + . ID=gene73;Name=SH04_RS00370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00370;old_locus_tag=SH04_00370 NZ_CP010443.1 Protein Homology CDS 76948 78969 . + 0 ID=cds67;Parent=gene73;Dbxref=Genbank:WP_038432713.1;Name=WP_038432713.1;Note=single-stranded DNA-dependent ATPase%3B initiates unwinding at a nick in the DNA%3B involved in DNA replication;gbkey=CDS;product=ATP-dependent DNA helicase Rep;protein_id=WP_038432713.1;transl_table=11 NZ_CP010443.1 RefSeq gene 79016 80500 . - . ID=gene74;Name=SH04_RS00375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00375;old_locus_tag=SH04_00375 NZ_CP010443.1 Protein Homology CDS 79016 80500 . - 0 ID=cds68;Parent=gene74;Dbxref=Genbank:WP_001295254.1;Name=WP_001295254.1;Note=catalyzes the conversion of guanosine 5'-triphosphate%2C3'-diphosphate (pppGpp) to guanosine 5'-diphosphate%2C3'-diphosphate (ppGpp)%3B pppGpp and ppGpp control the stringent response during amino acid starvation;gbkey=CDS;product=guanosine-5'-triphosphate%2C3'-diphosphate pyrophosphatase;protein_id=WP_001295254.1;transl_table=11 NZ_CP010443.1 RefSeq gene 80636 81901 . - . ID=gene75;Name=SH04_RS00380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00380;old_locus_tag=SH04_00380 NZ_CP010443.1 Protein Homology CDS 80636 81901 . - 0 ID=cds69;Parent=gene75;Dbxref=Genbank:WP_038432715.1;Name=WP_038432715.1;Note=enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome%2C a multi-enzyme complex important in RNA processing and messenger RNA degradation;gbkey=CDS;product=ATP-dependent RNA helicase RhlB;protein_id=WP_038432715.1;transl_table=11 NZ_CP010443.1 RefSeq gene 82032 82361 . + . ID=gene76;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=SH04_RS00385;old_locus_tag=SH04_00385 NZ_CP010443.1 Protein Homology CDS 82032 82361 . + 0 ID=cds70;Parent=gene76;Dbxref=Genbank:WP_001280776.1;Name=WP_001280776.1;gbkey=CDS;gene=trxA;product=thioredoxin;protein_id=WP_001280776.1;transl_table=11 NZ_CP010443.1 RefSeq gene 82502 82603 . + . ID=gene77;Name=SH04_RS00390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00390;old_locus_tag=SH04_00390 NZ_CP010443.1 Protein Homology CDS 82502 82603 . + 0 ID=cds71;Parent=gene77;Dbxref=Genbank:WP_001295255.1;Name=WP_001295255.1;gbkey=CDS;product=rho operon leader peptide;protein_id=WP_001295255.1;transl_table=11 NZ_CP010443.1 RefSeq gene 82688 83947 . + . ID=gene78;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;locus_tag=SH04_RS00395;old_locus_tag=SH04_00395 NZ_CP010443.1 Protein Homology CDS 82688 83947 . + 0 ID=cds72;Parent=gene78;Dbxref=Genbank:WP_001054527.1;Name=WP_001054527.1;Note=An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes;gbkey=CDS;gene=rho;product=transcription termination factor Rho;protein_id=WP_001054527.1;transl_table=11 NZ_CP010443.1 RefSeq gene 83957 84175 . + . ID=gene79;Name=SH04_RS00400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00400;old_locus_tag=SH04_00400 NZ_CP010443.1 Protein Homology CDS 83957 84175 . + 0 ID=cds73;Parent=gene79;Dbxref=Genbank:WP_001127071.1;Name=WP_001127071.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001127071.1;transl_table=11 NZ_CP010443.1 RefSeq gene 84187 85290 . + . ID=gene80;Name=SH04_RS00405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00405;old_locus_tag=SH04_00405 NZ_CP010443.1 Protein Homology CDS 84187 85290 . + 0 ID=cds74;Parent=gene80;Dbxref=Genbank:WP_038432717.1;Name=WP_038432717.1;Note=catalyzes the formation of alpha-N-acetylglucosaminyl-pyrophosphoryl-undecaprenyl from alpha-N-acetylglucosaminyl 1-phosphate and the lipid carrier undecaprenyl phosphate;gbkey=CDS;product=undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase;protein_id=WP_038432717.1;transl_table=11 NZ_CP010443.1 RefSeq gene 85302 86348 . + . ID=gene81;Name=SH04_RS00410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00410;old_locus_tag=SH04_00410 NZ_CP010443.1 Protein Homology CDS 85302 86348 . + 0 ID=cds75;Parent=gene81;Dbxref=Genbank:WP_038432720.1;Name=WP_038432720.1;Note=Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_038432720.1;transl_table=11 NZ_CP010443.1 RefSeq gene 86449 87534 . + . ID=gene82;Name=SH04_RS00415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00415;old_locus_tag=SH04_00415 NZ_CP010443.1 Protein Homology CDS 86449 87534 . + 0 ID=cds76;Parent=gene82;Dbxref=Genbank:WP_001336436.1;Name=WP_001336436.1;gbkey=CDS;product=UDP-N-acetylglucosamine 2-epimerase;protein_id=WP_001336436.1;transl_table=11 NZ_CP010443.1 RefSeq gene 87531 88793 . + . ID=gene83;Name=wecC;gbkey=Gene;gene=wecC;gene_biotype=protein_coding;locus_tag=SH04_RS00420;old_locus_tag=SH04_00420 NZ_CP010443.1 Protein Homology CDS 87531 88793 . + 0 ID=cds77;Parent=gene83;Dbxref=Genbank:WP_000006621.1;Name=WP_000006621.1;Note=catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid;gbkey=CDS;gene=wecC;product=UDP-N-acetyl-D-mannosamine dehydrogenase;protein_id=WP_000006621.1;transl_table=11 NZ_CP010443.1 RefSeq gene 88793 89860 . + . ID=gene84;Name=SH04_RS00425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00425;old_locus_tag=SH04_00425 NZ_CP010443.1 Protein Homology CDS 88793 89860 . + 0 ID=cds78;Parent=gene84;Dbxref=Genbank:WP_001226601.1;Name=WP_001226601.1;gbkey=CDS;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_001226601.1;transl_table=11 NZ_CP010443.1 RefSeq gene 89879 90760 . + . ID=gene85;Name=SH04_RS00430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00430;old_locus_tag=SH04_00430 NZ_CP010443.1 Protein Homology CDS 89879 90760 . + 0 ID=cds79;Parent=gene85;Dbxref=Genbank:WP_000676056.1;Name=WP_000676056.1;gbkey=CDS;product=glucose-1-phosphate thymidylyltransferase 2;protein_id=WP_000676056.1;transl_table=11 NZ_CP010443.1 RefSeq gene 90738 91412 . + . ID=gene86;Name=SH04_RS00435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00435;old_locus_tag=SH04_00435 NZ_CP010443.1 Protein Homology CDS 90738 91412 . + 0 ID=cds80;Parent=gene86;Dbxref=Genbank:WP_001145183.1;Name=WP_001145183.1;gbkey=CDS;product=dTDP-fucosamine acetyltransferase;protein_id=WP_001145183.1;transl_table=11 NZ_CP010443.1 RefSeq gene 91417 92547 . + . ID=gene87;Name=SH04_RS00440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00440;old_locus_tag=SH04_00440 NZ_CP010443.1 Protein Homology CDS 91417 92547 . + 0 ID=cds81;Parent=gene87;Dbxref=Genbank:WP_000612043.1;Name=WP_000612043.1;Note=catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis;gbkey=CDS;product=dTDP-4-amino-4%2C6-dideoxygalactose aminotransferase;protein_id=WP_000612043.1;transl_table=11 NZ_CP010443.1 RefSeq gene 92549 93799 . + . ID=gene88;Name=SH04_RS00445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00445;old_locus_tag=SH04_00445 NZ_CP010443.1 Protein Homology CDS 92549 93799 . + 0 ID=cds82;Parent=gene88;Dbxref=Genbank:WP_000050265.1;Name=WP_000050265.1;Note=involved in the movement of lipid III across the membrane;gbkey=CDS;product=protein WzxE;protein_id=WP_000050265.1;transl_table=11 NZ_CP010443.1 RefSeq gene 93796 94875 . + . ID=gene89;Name=SH04_RS00450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00450;old_locus_tag=SH04_00450 NZ_CP010443.1 Protein Homology CDS 93796 94875 . + 0 ID=cds83;Parent=gene89;Dbxref=Genbank:WP_000217234.1;Name=WP_000217234.1;Note=catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis;gbkey=CDS;product=TDP-N-acetylfucosamine--lipid II N-acetylfucosaminyltransferase;protein_id=WP_000217234.1;transl_table=11 NZ_CP010443.1 RefSeq gene 94872 96224 . + . ID=gene90;Name=SH04_RS00455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00455;old_locus_tag=SH04_00455 NZ_CP010443.1 Protein Homology CDS 94872 96224 . + 0 ID=cds84;Parent=gene90;Dbxref=Genbank:WP_000055129.1;Name=WP_000055129.1;Note=enterobacterial common antigen polymerase;gbkey=CDS;product=ECA polysaccharide chain elongation protein;protein_id=WP_000055129.1;transl_table=11 NZ_CP010443.1 RefSeq gene 96227 96967 . + . ID=gene91;Name=SH04_RS00460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00460;old_locus_tag=SH04_00460 NZ_CP010443.1 Protein Homology CDS 96227 96967 . + 0 ID=cds85;Parent=gene91;Dbxref=Genbank:WP_001064040.1;Name=WP_001064040.1;gbkey=CDS;product=UDP-N-acetyl-D-mannosaminuronic acid transferase;protein_id=WP_001064040.1;transl_table=11 NZ_CP010443.1 RefSeq gene 97158 98543 . + . ID=gene92;Name=SH04_RS00465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00465;old_locus_tag=SH04_00465 NZ_CP010443.1 Protein Homology CDS 97158 98543 . + 0 ID=cds86;Parent=gene92;Dbxref=Genbank:WP_000774731.1;Name=WP_000774731.1;Note=involved in the transport across the cytoplasmic membrane of D-alanine%2C D-serine and glycine;gbkey=CDS;product=transporter;protein_id=WP_000774731.1;transl_table=11 NZ_CP010443.1 RefSeq gene 98646 98722 . + . ID=gene93;Name=SH04_RS00470;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS00470;old_locus_tag=SH04_00470 NZ_CP010443.1 tRNAscan-SE tRNA 98646 98722 . + . ID=rna6;Parent=gene93;anticodon=(pos:98680..98682);gbkey=tRNA;product=tRNA-Arg NZ_CP010443.1 tRNAscan-SE exon 98646 98722 . + . ID=id8;Parent=rna6;anticodon=(pos:98680..98682);gbkey=tRNA;product=tRNA-Arg NZ_CP010443.1 RefSeq gene 98781 98856 . + . ID=gene94;Name=SH04_RS00475;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS00475;old_locus_tag=SH04_00475 NZ_CP010443.1 tRNAscan-SE tRNA 98781 98856 . + . ID=rna7;Parent=gene94;anticodon=(pos:98814..98816);gbkey=tRNA;product=tRNA-His NZ_CP010443.1 tRNAscan-SE exon 98781 98856 . + . ID=id9;Parent=rna7;anticodon=(pos:98814..98816);gbkey=tRNA;product=tRNA-His NZ_CP010443.1 RefSeq gene 98877 98963 . + . ID=gene95;Name=SH04_RS00480;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS00480;old_locus_tag=SH04_00480 NZ_CP010443.1 tRNAscan-SE tRNA 98877 98963 . + . ID=rna8;Parent=gene95;anticodon=(pos:98911..98913);gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 tRNAscan-SE exon 98877 98963 . + . ID=id10;Parent=rna8;anticodon=(pos:98911..98913);gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 RefSeq gene 99006 99082 . + . ID=gene96;Name=SH04_RS00485;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS00485;old_locus_tag=SH04_00485 NZ_CP010443.1 tRNAscan-SE tRNA 99006 99082 . + . ID=rna9;Parent=gene96;anticodon=(pos:99040..99042);gbkey=tRNA;product=tRNA-Pro NZ_CP010443.1 tRNAscan-SE exon 99006 99082 . + . ID=id11;Parent=rna9;anticodon=(pos:99040..99042);gbkey=tRNA;product=tRNA-Pro NZ_CP010443.1 RefSeq gene 99229 100464 . + . ID=gene97;Name=SH04_RS00490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00490;old_locus_tag=SH04_00490 NZ_CP010443.1 Protein Homology CDS 99229 100464 . + 0 ID=cds87;Parent=gene97;Dbxref=Genbank:WP_000941517.1;Name=WP_000941517.1;gbkey=CDS;product=anaerobic sulfatase maturase AslB;protein_id=WP_000941517.1;transl_table=11 NZ_CP010443.1 RefSeq gene 100623 102278 . - . ID=gene98;Name=SH04_RS00495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00495;old_locus_tag=SH04_00495 NZ_CP010443.1 Protein Homology CDS 100623 102278 . - 0 ID=cds88;Parent=gene98;Dbxref=Genbank:WP_000395863.1;Name=WP_000395863.1;gbkey=CDS;product=arylsulfatase;protein_id=WP_000395863.1;transl_table=11 NZ_CP010443.1 RefSeq gene 102957 104153 . - . ID=gene99;Name=SH04_RS00500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00500;old_locus_tag=SH04_00500 NZ_CP010443.1 Protein Homology CDS 102957 104153 . - 0 ID=cds89;Parent=gene99;Dbxref=Genbank:WP_000921791.1;Name=WP_000921791.1;gbkey=CDS;product=heme biosynthesis protein HemY;protein_id=WP_000921791.1;transl_table=11 NZ_CP010443.1 RefSeq gene 104156 105337 . - . ID=gene100;Name=SH04_RS00505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00505;old_locus_tag=SH04_00505 NZ_CP010443.1 Protein Homology CDS 104156 105337 . - 0 ID=cds90;Parent=gene100;Dbxref=Genbank:WP_000138997.1;Name=WP_000138997.1;gbkey=CDS;product=heme biosynthesis operon protein HemX;protein_id=WP_000138997.1;transl_table=11 NZ_CP010443.1 RefSeq gene 105359 106099 . - . ID=gene101;Name=hemD;gbkey=Gene;gene=hemD;gene_biotype=protein_coding;locus_tag=SH04_RS00510;old_locus_tag=SH04_00510 NZ_CP010443.1 Protein Homology CDS 105359 106099 . - 0 ID=cds91;Parent=gene101;Dbxref=Genbank:WP_000026046.1;Name=WP_000026046.1;Note=catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane%3B functions in tetrapyrrole and heme biosynthesis;gbkey=CDS;gene=hemD;product=uroporphyrinogen III methyltransferase;protein_id=WP_000026046.1;transl_table=11 NZ_CP010443.1 RefSeq gene 106096 107037 . - . ID=gene102;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;locus_tag=SH04_RS00515;old_locus_tag=SH04_00515 NZ_CP010443.1 Protein Homology CDS 106096 107037 . - 0 ID=cds92;Parent=gene102;Dbxref=Genbank:WP_001338644.1;Name=WP_001338644.1;Note=transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis;gbkey=CDS;gene=hemC;product=porphobilinogen deaminase;protein_id=WP_001338644.1;transl_table=11 NZ_CP010443.1 RefSeq gene 107424 109970 . + . ID=gene103;Name=cyaA;gbkey=Gene;gene=cyaA;gene_biotype=protein_coding;locus_tag=SH04_RS00520;old_locus_tag=SH04_00520 NZ_CP010443.1 Protein Homology CDS 107424 109970 . + 0 ID=cds93;Parent=gene103;Dbxref=Genbank:WP_000281668.1;Name=WP_000281668.1;Note=catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP;gbkey=CDS;gene=cyaA;product=adenylate cyclase;protein_id=WP_000281668.1;transl_table=11 NZ_CP010443.1 RefSeq gene 110010 110330 . - . ID=gene104;Name=cyaY;gbkey=Gene;gene=cyaY;gene_biotype=protein_coding;locus_tag=SH04_RS00525;old_locus_tag=SH04_00525 NZ_CP010443.1 Protein Homology CDS 110010 110330 . - 0 ID=cds94;Parent=gene104;Dbxref=Genbank:WP_000999947.1;Name=WP_000999947.1;Note=iron-dependent inhibitor of iron-sulfur cluster formation%3B iron-binding and oxidizing protein%3B defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease%3B based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly;gbkey=CDS;gene=cyaY;product=protein CyaY;protein_id=WP_000999947.1;transl_table=11 NZ_CP010443.1 RefSeq gene 110793 110996 . + . ID=gene105;Name=SH04_RS00530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00530;old_locus_tag=SH04_00530 NZ_CP010443.1 Protein Homology CDS 110793 110996 . + 0 ID=cds95;Parent=gene105;Dbxref=Genbank:WP_000799889.1;Name=WP_000799889.1;gbkey=CDS;product=membrane protein;protein_id=WP_000799889.1;transl_table=11 NZ_CP010443.1 RefSeq gene 111033 111857 . + . ID=gene106;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;locus_tag=SH04_RS00535;old_locus_tag=SH04_00535 NZ_CP010443.1 Protein Homology CDS 111033 111857 . + 0 ID=cds96;Parent=gene106;Dbxref=Genbank:WP_001160654.1;Name=WP_001160654.1;Note=involved in lysine biosynthesis%3B DAP epimerase%3B produces DL-diaminopimelate from LL-diaminopimelate;gbkey=CDS;gene=dapF;product=diaminopimelate epimerase;protein_id=WP_001160654.1;transl_table=11 NZ_CP010443.1 RefSeq gene 111854 112561 . + . ID=gene107;Name=SH04_RS00540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00540;old_locus_tag=SH04_00540 NZ_CP010443.1 Protein Homology CDS 111854 112561 . + 0 ID=cds97;Parent=gene107;Dbxref=Genbank:WP_000812796.1;Name=WP_000812796.1;gbkey=CDS;product=DUF484 domain-containing protein;protein_id=WP_000812796.1;transl_table=11 NZ_CP010443.1 RefSeq gene 112558 113454 . + . ID=gene108;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=SH04_RS00545;old_locus_tag=SH04_00545 NZ_CP010443.1 Protein Homology CDS 112558 113454 . + 0 ID=cds98;Parent=gene108;Dbxref=Genbank:WP_000130691.1;Name=WP_000130691.1;Note=site-specific tyrosine recombinase which cuts and rejoins DNA molecules%3B binds cooperatively to specific DNA consensus sites%3B forms a heterotetrameric complex with XerC%3B XerCD exhibit similar sequences%3B essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation%3B cell division protein FtsK may regulate the XerCD complex%3B enzyme from Streptococcus group has unusual active site motifs;gbkey=CDS;gene=xerC;product=tyrosine recombinase XerC;protein_id=WP_000130691.1;transl_table=11 NZ_CP010443.1 RefSeq gene 113454 114170 . + . ID=gene109;Name=SH04_RS00550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00550;old_locus_tag=SH04_00550 NZ_CP010443.1 Protein Homology CDS 113454 114170 . + 0 ID=cds99;Parent=gene109;Dbxref=Genbank:WP_001213584.1;Name=WP_001213584.1;Note=YigB%3B member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein%3B unknown function;gbkey=CDS;product=flavin mononucleotide phosphatase YigB;protein_id=WP_001213584.1;transl_table=11 NZ_CP010443.1 RefSeq gene 114254 116416 . + . ID=gene110;Name=uvrD;gbkey=Gene;gene=uvrD;gene_biotype=protein_coding;locus_tag=SH04_RS00555;old_locus_tag=SH04_00555 NZ_CP010443.1 Protein Homology CDS 114254 116416 . + 0 ID=cds100;Parent=gene110;Dbxref=Genbank:WP_000383406.1;Name=WP_000383406.1;Note=unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present%3B involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.;gbkey=CDS;gene=uvrD;product=DNA helicase II;protein_id=WP_000383406.1;transl_table=11 NZ_CP010443.1 RefSeq gene 116563 117327 . - . ID=gene111;Name=SH04_RS00560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00560;old_locus_tag=SH04_00560 NZ_CP010443.1 Protein Homology CDS 116563 117327 . - 0 ID=cds101;Parent=gene111;Dbxref=Genbank:WP_000951133.1;Name=WP_000951133.1;gbkey=CDS;product=DUF2233 domain-containing protein;protein_id=WP_000951133.1;transl_table=11 NZ_CP010443.1 RefSeq gene 117340 117453 . + . ID=gene112;Name=SH04_RS00565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00565;old_locus_tag=SH04_00565 NZ_CP010443.1 Protein Homology CDS 117340 117453 . + 0 ID=cds102;Parent=gene112;Dbxref=Genbank:WP_000263457.1;Name=WP_000263457.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000263457.1;transl_table=11 NZ_CP010443.1 RefSeq gene 117697 118647 . + . ID=gene113;Name=SH04_RS00570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00570;old_locus_tag=SH04_00570 NZ_CP010443.1 Protein Homology CDS 117697 118647 . + 0 ID=cds103;Parent=gene113;Dbxref=Genbank:WP_000947159.1;Name=WP_000947159.1;Note=responsible for the influx of magnesium ions;gbkey=CDS;product=magnesium transporter CorA;protein_id=WP_000947159.1;transl_table=11 NZ_CP010443.1 RefSeq gene 118690 119070 . - . ID=gene114;Name=SH04_RS00575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00575;old_locus_tag=SH04_00575 NZ_CP010443.1 Protein Homology CDS 118690 119070 . - 0 ID=cds104;Parent=gene114;Dbxref=Genbank:WP_000032581.1;Name=WP_000032581.1;gbkey=CDS;product=DUF2628 domain-containing protein;protein_id=WP_000032581.1;transl_table=11 NZ_CP010443.1 RefSeq gene 119084 119464 . - . ID=gene115;Name=SH04_RS00580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00580;old_locus_tag=SH04_00580 NZ_CP010443.1 Protein Homology CDS 119084 119464 . - 0 ID=cds105;Parent=gene115;Dbxref=Genbank:WP_000944218.1;Name=WP_000944218.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000944218.1;transl_table=11 NZ_CP010443.1 RefSeq gene 119559 120449 . - . ID=gene116;Name=SH04_RS00585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00585;old_locus_tag=SH04_00585 NZ_CP010443.1 Protein Homology CDS 119559 120449 . - 0 ID=cds106;Parent=gene116;Dbxref=Genbank:WP_000339104.1;Name=WP_000339104.1;gbkey=CDS;product=protein RarD;protein_id=WP_000339104.1;transl_table=11 NZ_CP010443.1 RefSeq gene 120501 120968 . - . ID=gene117;Name=SH04_RS00590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00590;old_locus_tag=SH04_00590 NZ_CP010443.1 Protein Homology CDS 120501 120968 . - 0 ID=cds107;Parent=gene117;Dbxref=Genbank:WP_001277142.1;Name=WP_001277142.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001277142.1;transl_table=11 NZ_CP010443.1 RefSeq gene 121133 122002 . + . ID=gene118;Name=SH04_RS00595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00595;old_locus_tag=SH04_00595 NZ_CP010443.1 Protein Homology CDS 121133 122002 . + 0 ID=cds108;Parent=gene118;Dbxref=Genbank:WP_001259700.1;Name=WP_001259700.1;Note=catalyzes the hydrolysis of phosphatidylcholine;gbkey=CDS;product=phospholipase A1;protein_id=WP_001259700.1;transl_table=11 NZ_CP010443.1 RefSeq gene 122135 123964 . + . ID=gene119;Name=SH04_RS00600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00600;old_locus_tag=SH04_00600 NZ_CP010443.1 Protein Homology CDS 122135 123964 . + 0 ID=cds109;Parent=gene119;Dbxref=Genbank:WP_000035581.1;Name=WP_000035581.1;Note=functions in blocking illegitimate recombination%2C enhancing topoisomerase activity%2C initiating SOS signaling and clearing blocked replication forks%3B component of the RecF recombinational pathway;gbkey=CDS;product=ATP-dependent DNA helicase RecQ;protein_id=WP_000035581.1;transl_table=11 NZ_CP010443.1 RefSeq gene 124028 124648 . + . ID=gene120;Name=SH04_RS00605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00605;old_locus_tag=SH04_00605 NZ_CP010443.1 Protein Homology CDS 124028 124648 . + 0 ID=cds110;Parent=gene120;Dbxref=Genbank:WP_000928824.1;Name=WP_000928824.1;gbkey=CDS;product=threonine efflux protein;protein_id=WP_000928824.1;transl_table=11 NZ_CP010443.1 RefSeq gene 124710 125330 . - . ID=gene121;Name=rhtB;gbkey=Gene;gene=rhtB;gene_biotype=protein_coding;locus_tag=SH04_RS00610;old_locus_tag=SH04_00610 NZ_CP010443.1 Protein Homology CDS 124710 125330 . - 0 ID=cds111;Parent=gene121;Dbxref=Genbank:WP_000171710.1;Name=WP_000171710.1;gbkey=CDS;gene=rhtB;product=homoserine/homoserine lactone efflux protein;protein_id=WP_000171710.1;transl_table=11 NZ_CP010443.1 RefSeq gene 125441 126463 . + . ID=gene122;Name=SH04_RS00615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00615;old_locus_tag=SH04_00615 NZ_CP010443.1 Protein Homology CDS 125441 126463 . + 0 ID=cds112;Parent=gene122;Dbxref=Genbank:WP_000487654.1;Name=WP_000487654.1;Note=lecithinase B%3B catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine%3B can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates;gbkey=CDS;product=lysophospholipase L2;protein_id=WP_000487654.1;transl_table=11 NZ_CP010443.1 RefSeq gene 126471 127271 . + . ID=gene123;Name=SH04_RS00620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00620;old_locus_tag=SH04_00620 NZ_CP010443.1 Protein Homology CDS 126471 127271 . + 0 ID=cds113;Parent=gene123;Dbxref=Genbank:WP_000285362.1;Name=WP_000285362.1;gbkey=CDS;product=pyridoxal phosphate phosphatase YigL;protein_id=WP_000285362.1;transl_table=11 NZ_CP010443.1 RefSeq gene 127347 128246 . + . ID=gene124;Name=SH04_RS00625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00625;old_locus_tag=SH04_00625 NZ_CP010443.1 Protein Homology CDS 127347 128246 . + 0 ID=cds114;Parent=gene124;Dbxref=Genbank:WP_001196238.1;Name=WP_001196238.1;gbkey=CDS;product=EamA-like transporter;protein_id=WP_001196238.1;transl_table=11 NZ_CP010443.1 RefSeq gene 128134 129087 . - . ID=gene125;Name=SH04_RS00630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00630;old_locus_tag=SH04_00630 NZ_CP010443.1 Protein Homology CDS 128134 129087 . - 0 ID=cds115;Parent=gene125;Dbxref=Genbank:WP_000573621.1;Name=WP_000573621.1;Note=homocysteine-binding%3B positive regulator of metA%2C metE and metH;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000573621.1;transl_table=11 NZ_CP010443.1 RefSeq gene 129324 131585 . + . ID=gene126;Name=SH04_RS00635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00635;old_locus_tag=SH04_00635 NZ_CP010443.1 Protein Homology CDS 129324 131585 . + 0 ID=cds116;Parent=gene126;Dbxref=Genbank:WP_000153907.1;Name=WP_000153907.1;gbkey=CDS;product=5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase;protein_id=WP_000153907.1;transl_table=11 NZ_CP010443.1 RefSeq gene 131625 132440 . - . ID=gene127;Name=SH04_RS00640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00640;old_locus_tag=SH04_00640 NZ_CP010443.1 Protein Homology CDS 131625 132440 . - 0 ID=cds117;Parent=gene127;Dbxref=Genbank:WP_001336442.1;Name=WP_001336442.1;gbkey=CDS;product=carboxymethylenebutenolidase;protein_id=WP_001336442.1;transl_table=11 NZ_CP010443.1 RefSeq gene 132702 133463 . + . ID=gene128;Name=SH04_RS00645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00645;old_locus_tag=SH04_00645 NZ_CP010443.1 Protein Homology CDS 132702 133463 . + 0 ID=cds118;Parent=gene128;Dbxref=Genbank:WP_000045177.1;Name=WP_000045177.1;Note=catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate%3B involved in the pyrimidine salvage pathway;gbkey=CDS;product=uridine phosphorylase;protein_id=WP_000045177.1;transl_table=11 NZ_CP010443.1 RefSeq gene 133604 135031 . + . ID=gene129;Name=SH04_RS00650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00650;old_locus_tag=SH04_00650 NZ_CP010443.1 Protein Homology CDS 133604 135031 . + 0 ID=cds119;Parent=gene129;Dbxref=Genbank:WP_000347714.1;Name=WP_000347714.1;Note=YigN%3B nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence%3B transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner;gbkey=CDS;product=DNA recombination protein RmuC;protein_id=WP_000347714.1;transl_table=11 NZ_CP010443.1 RefSeq gene 135126 135881 . + . ID=gene130;Name=ubiE;gbkey=Gene;gene=ubiE;gene_biotype=protein_coding;locus_tag=SH04_RS00655;old_locus_tag=SH04_00655 NZ_CP010443.1 Protein Homology CDS 135126 135881 . + 0 ID=cds120;Parent=gene130;Dbxref=Genbank:WP_000227958.1;Name=WP_000227958.1;Note=Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone and menaquinone;gbkey=CDS;gene=ubiE;product=ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE;protein_id=WP_000227958.1;transl_table=11 NZ_CP010443.1 RefSeq gene 135895 136500 . + . ID=gene131;Name=SH04_RS00660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00660;old_locus_tag=SH04_00660 NZ_CP010443.1 Protein Homology CDS 135895 136500 . + 0 ID=cds121;Parent=gene131;Dbxref=Genbank:WP_001295259.1;Name=WP_001295259.1;gbkey=CDS;product=ubiquinone biosynthesis protein UbiJ;protein_id=WP_001295259.1;transl_table=11 NZ_CP010443.1 RefSeq gene 136497 138137 . + . ID=gene132;Name=ubiB;gbkey=Gene;gene=ubiB;gene_biotype=protein_coding;gene_synonym=aarF,yigQ,yigR;locus_tag=SH04_RS00665;old_locus_tag=SH04_00665 NZ_CP010443.1 Protein Homology CDS 136497 138137 . + 0 ID=cds122;Parent=gene132;Dbxref=Genbank:WP_000187530.1;Name=WP_000187530.1;Note=an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone%3B functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis%3B similar to eukaryotic proteins that exhibit kinase functions;gbkey=CDS;gene=ubiB;product=hypothetical protein;protein_id=WP_000187530.1;transl_table=11 NZ_CP010443.1 RefSeq gene 138216 138485 . + . ID=gene133;Name=tatA;gbkey=Gene;gene=tatA;gene_biotype=protein_coding;locus_tag=SH04_RS00670;old_locus_tag=SH04_00670 NZ_CP010443.1 Protein Homology CDS 138216 138485 . + 0 ID=cds123;Parent=gene133;Dbxref=Genbank:WP_001295260.1;Name=WP_001295260.1;Note=TatA%3B similar to TatE that is found in some proteobacteria%3B part of system that translocates proteins with a conserved twin arginine motif across the inner membrane%3B capable of translocating folded substrates typically those with bound cofactors%3B similar to a protein import system in thylakoid membranes;gbkey=CDS;gene=tatA;product=protein translocase TatA;protein_id=WP_001295260.1;transl_table=11 NZ_CP010443.1 RefSeq gene 138489 139004 . + . ID=gene134;Name=SH04_RS00675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00675;old_locus_tag=SH04_00675 NZ_CP010443.1 Protein Homology CDS 138489 139004 . + 0 ID=cds124;Parent=gene134;Dbxref=Genbank:WP_000459594.1;Name=WP_000459594.1;Note=mediates the export of protein precursors bearing twin-arginine signal peptides;gbkey=CDS;product=Sec-independent protein translocase TatB;protein_id=WP_000459594.1;transl_table=11 NZ_CP010443.1 RefSeq gene 139007 139783 . + . ID=gene135;Name=SH04_RS00680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00680;old_locus_tag=SH04_00680 NZ_CP010443.1 Protein Homology CDS 139007 139783 . + 0 ID=cds125;Parent=gene135;Dbxref=Genbank:WP_000109943.1;Name=WP_000109943.1;Note=with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane;gbkey=CDS;product=preprotein translocase subunit TatC;protein_id=WP_000109943.1;transl_table=11 NZ_CP010443.1 RefSeq gene 139825 140607 . + . ID=gene136;Name=SH04_RS00685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00685;old_locus_tag=SH04_00685 NZ_CP010443.1 Protein Homology CDS 139825 140607 . + 0 ID=cds126;Parent=gene136;Dbxref=Genbank:WP_000459630.1;Name=WP_000459630.1;Note=magnesium dependent%3B involved in quality control of mutated Tat exported substrates%3B not involved in the Sec-independent protein export system;gbkey=CDS;product=Tat-linked quality control protein TatD;protein_id=WP_000459630.1;transl_table=11 NZ_CP010443.1 RefSeq gene 140604 141092 . - . ID=gene137;Name=rfaH;gbkey=Gene;gene=rfaH;gene_biotype=protein_coding;locus_tag=SH04_RS00690;old_locus_tag=SH04_00690 NZ_CP010443.1 Protein Homology CDS 140604 141092 . - 0 ID=cds127;Parent=gene137;Dbxref=Genbank:WP_001192396.1;Name=WP_001192396.1;gbkey=CDS;gene=rfaH;product=transcription antitermination protein RfaH;protein_id=WP_001192396.1;transl_table=11 NZ_CP010443.1 RefSeq gene 141259 142752 . + . ID=gene138;Name=SH04_RS00695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00695;old_locus_tag=SH04_00695 NZ_CP010443.1 Protein Homology CDS 141259 142752 . + 0 ID=cds128;Parent=gene138;Dbxref=Genbank:WP_000339804.1;Name=WP_000339804.1;Note=catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol;gbkey=CDS;product=3-octaprenyl-4-hydroxybenzoate carboxy-lyase;protein_id=WP_000339804.1;transl_table=11 NZ_CP010443.1 RefSeq gene 142798 143499 . + . ID=gene139;Name=fre;gbkey=Gene;gene=fre;gene_biotype=protein_coding;gene_synonym=fadI;locus_tag=SH04_RS00700;old_locus_tag=SH04_00700 NZ_CP010443.1 Protein Homology CDS 142798 143499 . + 0 ID=cds129;Parent=gene139;Dbxref=Genbank:WP_000209826.1;Name=WP_000209826.1;Note=NAD(P)H-flavin reductase%3B catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide%3B in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin;gbkey=CDS;gene=fre;product=NAD(P)H-flavin reductase;protein_id=WP_000209826.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 143597 143816 . + . ID=id12;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 143880 145043 . - . ID=gene140;Name=fadA;gbkey=Gene;gene=fadA;gene_biotype=protein_coding;locus_tag=SH04_RS00705;old_locus_tag=SH04_00705 NZ_CP010443.1 Protein Homology CDS 143880 145043 . - 0 ID=cds130;Parent=gene140;Dbxref=Genbank:WP_000438725.1;Name=WP_000438725.1;Note=FadA%3B fatty acid oxidation complex component beta%3B functions in a heterotetramer with FadB%3B similar to FadI2J2 complex%3B functions in beta-oxidation of fatty acids;gbkey=CDS;gene=fadA;product=3-ketoacyl-CoA thiolase;protein_id=WP_000438725.1;transl_table=11 NZ_CP010443.1 RefSeq gene 145053 147242 . - . ID=gene141;Name=fadB;gbkey=Gene;gene=fadB;gene_biotype=protein_coding;locus_tag=SH04_RS00710;old_locus_tag=SH04_00710 NZ_CP010443.1 Protein Homology CDS 145053 147242 . - 0 ID=cds131;Parent=gene141;Dbxref=Genbank:WP_000965936.1;Name=WP_000965936.1;Note=includes enoyl-CoA hydratase%2C delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase%2C 3-hydroxyacyl-CoA dehydrogenase%2C and 3-hydroxybutyryl-CoA epimerase%3B catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA%3B also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities%3B forms a heterotetramer with FadA%3B similar to FadI2J2 complex%3B functions in beta-oxidation of fatty acids;gbkey=CDS;gene=fadB;product=fatty acid oxidation complex subunit alpha;protein_id=WP_000965936.1;transl_table=11 NZ_CP010443.1 RefSeq gene 147432 148763 . + . ID=gene142;Name=SH04_RS00715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00715;old_locus_tag=SH04_00715 NZ_CP010443.1 Protein Homology CDS 147432 148763 . + 0 ID=cds132;Parent=gene142;Dbxref=Genbank:WP_000444561.1;Name=WP_000444561.1;Note=catalyzes the hydrolysis of dipeptides with a proline at the C-terminal%3B also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters;gbkey=CDS;product=Xaa-Pro dipeptidase;protein_id=WP_000444561.1;transl_table=11 NZ_CP010443.1 RefSeq gene 148763 149377 . + . ID=gene143;Name=SH04_RS00720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00720;old_locus_tag=SH04_00720 NZ_CP010443.1 Protein Homology CDS 148763 149377 . + 0 ID=cds133;Parent=gene143;Dbxref=Genbank:WP_001308167.1;Name=WP_001308167.1;gbkey=CDS;product=IMPACT family member YigZ;protein_id=WP_001308167.1;transl_table=11 NZ_CP010443.1 RefSeq gene 149416 150867 . + . ID=gene144;Name=SH04_RS00725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00725;old_locus_tag=SH04_00725 NZ_CP010443.1 Protein Homology CDS 149416 150867 . + 0 ID=cds134;Parent=gene144;Dbxref=Genbank:WP_000545677.1;Name=WP_000545677.1;gbkey=CDS;product=trk system potassium uptake protein trkH;protein_id=WP_000545677.1;transl_table=11 NZ_CP010443.1 RefSeq gene 150879 151424 . + . ID=gene145;Name=hemG;gbkey=Gene;gene=hemG;gene_biotype=protein_coding;locus_tag=SH04_RS00730;old_locus_tag=SH04_00730 NZ_CP010443.1 Protein Homology CDS 150879 151424 . + 0 ID=cds135;Parent=gene145;Dbxref=Genbank:WP_000853959.1;Name=WP_000853959.1;Note=catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX;gbkey=CDS;gene=hemG;product=protoporphyrinogen IX dehydrogenase [menaquinone];protein_id=WP_000853959.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 151436 157116 . + . ID=id13;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 151800 153355 . + . ID=gene146;Name=SH04_RS00735;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS00735;old_locus_tag=SH04_00735 NZ_CP010443.1 RefSeq rRNA 151800 153355 . + . ID=rna10;Parent=gene146;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010443.1 RefSeq exon 151800 153355 . + . ID=id14;Parent=rna10;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010443.1 RefSeq gene 153412 153488 . + . ID=gene147;Name=SH04_RS00740;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS00740;old_locus_tag=SH04_00740 NZ_CP010443.1 tRNAscan-SE tRNA 153412 153488 . + . ID=rna11;Parent=gene147;anticodon=(pos:153446..153448);gbkey=tRNA;product=tRNA-Ile NZ_CP010443.1 tRNAscan-SE exon 153412 153488 . + . ID=id15;Parent=rna11;anticodon=(pos:153446..153448);gbkey=tRNA;product=tRNA-Ile NZ_CP010443.1 RefSeq gene 153531 153606 . + . ID=gene148;Name=SH04_RS00745;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS00745;old_locus_tag=SH04_00745 NZ_CP010443.1 tRNAscan-SE tRNA 153531 153606 . + . ID=rna12;Parent=gene148;anticodon=(pos:153564..153566);gbkey=tRNA;product=tRNA-Ala NZ_CP010443.1 tRNAscan-SE exon 153531 153606 . + . ID=id16;Parent=rna12;anticodon=(pos:153564..153566);gbkey=tRNA;product=tRNA-Ala NZ_CP010443.1 RefSeq gene 153781 156712 . + . ID=gene149;Name=SH04_RS00750;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS00750;old_locus_tag=SH04_00750 NZ_CP010443.1 RefSeq rRNA 153781 156712 . + . ID=rna13;Parent=gene149;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010443.1 RefSeq exon 153781 156712 . + . ID=id17;Parent=rna13;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010443.1 RefSeq gene 156790 156905 . + . ID=gene150;Name=SH04_RS00755;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS00755;old_locus_tag=SH04_00755 NZ_CP010443.1 cmsearch rRNA 156790 156905 . + . ID=rna14;Parent=gene150;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 cmsearch exon 156790 156905 . + . ID=id18;Parent=rna14;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 RefSeq gene 157177 157704 . - . ID=gene151;Name=SH04_RS00760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00760;old_locus_tag=SH04_00760 NZ_CP010443.1 Protein Homology CDS 157177 157704 . - 0 ID=cds136;Parent=gene151;Dbxref=Genbank:WP_000907622.1;Name=WP_000907622.1;Note=in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway;gbkey=CDS;product=molybdopterin-guanine dinucleotide biosynthesis adapter protein;protein_id=WP_000907622.1;transl_table=11 NZ_CP010443.1 RefSeq gene 157686 158270 . - . ID=gene152;Name=mobA;gbkey=Gene;gene=mobA;gene_biotype=protein_coding;locus_tag=SH04_RS00765;old_locus_tag=SH04_00765 NZ_CP010443.1 Protein Homology CDS 157686 158270 . - 0 ID=cds137;Parent=gene152;Dbxref=Genbank:WP_001052181.1;Name=WP_001052181.1;Note=in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis;gbkey=CDS;gene=mobA;product=molybdenum cofactor guanylyltransferase;protein_id=WP_001052181.1;transl_table=11 NZ_CP010443.1 RefSeq gene 158340 158609 . + . ID=gene153;Name=SH04_RS00770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00770;old_locus_tag=SH04_00770 NZ_CP010443.1 Protein Homology CDS 158340 158609 . + 0 ID=cds138;Parent=gene153;Dbxref=Genbank:WP_001295263.1;Name=WP_001295263.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295263.1;transl_table=11 NZ_CP010443.1 RefSeq gene 158686 159672 . + . ID=gene154;Name=SH04_RS00775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00775;old_locus_tag=SH04_00775 NZ_CP010443.1 Protein Homology CDS 158686 159672 . + 0 ID=cds139;Parent=gene154;Dbxref=Genbank:WP_001065497.1;Name=WP_001065497.1;Note=catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro%3B specific substrate in vivo has not been identified yet%3B plays a role in long-term cell survival and expression of surface appendages;gbkey=CDS;product=protein RdoA;protein_id=WP_001065497.1;transl_table=11 NZ_CP010443.1 RefSeq gene 159689 160315 . + . ID=gene155;Name=SH04_RS00780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00780;old_locus_tag=SH04_00780 NZ_CP010443.1 Protein Homology CDS 159689 160315 . + 0 ID=cds140;Parent=gene155;Dbxref=Genbank:WP_000725337.1;Name=WP_000725337.1;gbkey=CDS;product=thiol:disulfide interchange protein DsbA;protein_id=WP_000725337.1;transl_table=11 NZ_CP010443.1 RefSeq gene 160470 161900 . + . ID=gene156;Name=SH04_RS00785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00785;old_locus_tag=SH04_00785 NZ_CP010443.1 Protein Homology CDS 160470 161900 . + 0 ID=cds141;Parent=gene156;Dbxref=Genbank:WP_001333507.1;Name=WP_001333507.1;gbkey=CDS;product=DUF945 domain-containing protein;protein_id=WP_001333507.1;transl_table=11 NZ_CP010443.1 RefSeq gene 161941 162873 . - . ID=gene157;Name=SH04_RS00790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00790;old_locus_tag=SH04_00790 NZ_CP010443.1 Protein Homology CDS 161941 162873 . - 0 ID=cds142;Parent=gene157;Dbxref=Genbank:WP_001311257.1;Name=WP_001311257.1;gbkey=CDS;product=acyltransferase;protein_id=WP_001311257.1;transl_table=11 NZ_CP010443.1 RefSeq gene 162993 163235 . - . ID=gene158;Name=SH04_RS00795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00795;old_locus_tag=SH04_00795 NZ_CP010443.1 Protein Homology CDS 162993 163235 . - 0 ID=cds143;Parent=gene158;Dbxref=Genbank:WP_000115994.1;Name=WP_000115994.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000115994.1;transl_table=11 NZ_CP010443.1 RefSeq gene 163237 166023 . + . ID=gene159;Name=SH04_RS00800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00800;old_locus_tag=SH04_00800 NZ_CP010443.1 Protein Homology CDS 163237 166023 . + 0 ID=cds144;Parent=gene159;Dbxref=Genbank:WP_000250006.1;Name=WP_000250006.1;gbkey=CDS;product=DNA polymerase I;protein_id=WP_000250006.1;transl_table=11 NZ_CP010443.1 RefSeq gene 166404 167036 . - . ID=gene160;Name=SH04_RS00805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00805;old_locus_tag=SH04_00805 NZ_CP010443.1 Protein Homology CDS 166404 167036 . - 0 ID=cds145;Parent=gene160;Dbxref=Genbank:WP_000183349.1;Name=WP_000183349.1;gbkey=CDS;product=GTP-binding protein;protein_id=WP_000183349.1;transl_table=11 NZ_CP010443.1 RefSeq gene 167618 168127 . + . ID=gene161;Name=SH04_RS00810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00810;old_locus_tag=SH04_00810 NZ_CP010443.1 Protein Homology CDS 167618 168127 . + 0 ID=cds146;Parent=gene161;Dbxref=Genbank:WP_001295266.1;Name=WP_001295266.1;gbkey=CDS;product=der GTPase-activating protein YihI;protein_id=WP_001295266.1;transl_table=11 NZ_CP010443.1 RefSeq gene 168316 169689 . + . ID=gene162;Name=SH04_RS00815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00815;old_locus_tag=SH04_00815 NZ_CP010443.1 Protein Homology CDS 168316 169689 . + 0 ID=cds147;Parent=gene162;Dbxref=Genbank:WP_000116090.1;Name=WP_000116090.1;Note=catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III;gbkey=CDS;product=coproporphyrinogen III oxidase;protein_id=WP_000116090.1;transl_table=11 NZ_CP010443.1 RefSeq gene 169918 170028 . - . ID=gene163;Name=SH04_RS00820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00820;old_locus_tag=SH04_00820 NZ_CP010443.1 Protein Homology CDS 169918 170028 . - 0 ID=cds148;Parent=gene163;Dbxref=Genbank:WP_000893994.1;Name=WP_000893994.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000893994.1;transl_table=11 NZ_CP010443.1 RefSeq gene 170140 171549 . - . ID=gene164;Name=glnG;gbkey=Gene;gene=glnG;gene_biotype=protein_coding;locus_tag=SH04_RS00825;old_locus_tag=SH04_00825 NZ_CP010443.1 Protein Homology CDS 170140 171549 . - 0 ID=cds149;Parent=gene164;Dbxref=Genbank:WP_001188777.1;Name=WP_001188777.1;Note=response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes%3B interacts with sigma-54;gbkey=CDS;gene=glnG;product=nitrogen regulation protein NR(I);protein_id=WP_001188777.1;transl_table=11 NZ_CP010443.1 RefSeq gene 171561 172610 . - . ID=gene165;Name=glnL;gbkey=Gene;gene=glnL;gene_biotype=protein_coding;locus_tag=SH04_RS00830;old_locus_tag=SH04_00830 NZ_CP010443.1 Protein Homology CDS 171561 172610 . - 0 ID=cds150;Parent=gene165;Dbxref=Genbank:WP_000190577.1;Name=WP_000190577.1;Note=sensory histidine kinase in two-component regulatory system with GlnG%3B acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation;gbkey=CDS;gene=glnL;product=PAS domain-containing two-component system sensor histidine kinase;protein_id=WP_000190577.1;transl_table=11 NZ_CP010443.1 RefSeq gene 172896 174305 . - . ID=gene166;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=SH04_RS00835;old_locus_tag=SH04_00835 NZ_CP010443.1 Protein Homology CDS 172896 174305 . - 0 ID=cds151;Parent=gene166;Dbxref=Genbank:WP_001271717.1;Name=WP_001271717.1;Note=forms a homododecamer%3B forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate%3B also functions in the assimilation of ammonia%3B highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues%3B addition of adenylyl groups results in inactivation of the enzyme;gbkey=CDS;gene=glnA;product=glutamine synthetase;protein_id=WP_001271717.1;transl_table=11 NZ_CP010443.1 RefSeq gene 174284 174517 . - . ID=gene167;Name=SH04_RS00840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00840;old_locus_tag=SH04_00840 NZ_CP010443.1 Protein Homology CDS 174284 174517 . - 0 ID=cds152;Parent=gene167;Dbxref=Genbank:WP_023140569.1;Name=WP_023140569.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023140569.1;transl_table=11 NZ_CP010443.1 RefSeq gene 174678 176501 . + . ID=gene168;Name=SH04_RS00845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00845;old_locus_tag=SH04_00845 NZ_CP010443.1 Protein Homology CDS 174678 176501 . + 0 ID=cds153;Parent=gene168;Dbxref=Genbank:WP_000570668.1;Name=WP_000570668.1;gbkey=CDS;product=GTP-binding protein;protein_id=WP_000570668.1;transl_table=11 NZ_CP010443.1 RefSeq gene 176718 177428 . + . ID=gene169;Name=SH04_RS00850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00850;old_locus_tag=SH04_00850 NZ_CP010443.1 Protein Homology CDS 176718 177428 . + 0 ID=cds154;Parent=gene169;Dbxref=Genbank:WP_000829798.1;Name=WP_000829798.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000829798.1;transl_table=11 NZ_CP010443.1 RefSeq gene 177436 178416 . + . ID=gene170;Name=SH04_RS00855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00855;old_locus_tag=SH04_00855 NZ_CP010443.1 Protein Homology CDS 177436 178416 . + 0 ID=cds155;Parent=gene170;Dbxref=Genbank:WP_000256396.1;Name=WP_000256396.1;gbkey=CDS;product=sugar phosphate isomerase;protein_id=WP_000256396.1;transl_table=11 NZ_CP010443.1 RefSeq gene 178518 179783 . + . ID=gene171;Name=SH04_RS00860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00860;old_locus_tag=SH04_00860 NZ_CP010443.1 Protein Homology CDS 178518 179783 . + 0 ID=cds156;Parent=gene171;Dbxref=Genbank:WP_000956313.1;Name=WP_000956313.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000956313.1;transl_table=11 NZ_CP010443.1 RefSeq gene 179874 180566 . - . ID=gene172;Name=ompL;gbkey=Gene;gene=ompL;gene_biotype=protein_coding;locus_tag=SH04_RS00865;old_locus_tag=SH04_00865 NZ_CP010443.1 Protein Homology CDS 179874 180566 . - 0 ID=cds157;Parent=gene172;Dbxref=Genbank:WP_000723465.1;Name=WP_000723465.1;Note=porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall%3B specific substrate still unknown;gbkey=CDS;gene=ompL;product=porin;protein_id=WP_000723465.1;transl_table=11 NZ_CP010443.1 RefSeq gene 180634 182037 . - . ID=gene173;Name=SH04_RS00870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00870;old_locus_tag=SH04_00870 NZ_CP010443.1 Protein Homology CDS 180634 182037 . - 0 ID=cds158;Parent=gene173;Dbxref=Genbank:WP_001295267.1;Name=WP_001295267.1;gbkey=CDS;product=sulfoquinovose importer;protein_id=WP_001295267.1;transl_table=11 NZ_CP010443.1 RefSeq gene 182080 183465 . - . ID=gene174;Name=SH04_RS00875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00875;old_locus_tag=SH04_00875 NZ_CP010443.1 Protein Homology CDS 182080 183465 . - 0 ID=cds159;Parent=gene174;Dbxref=Genbank:WP_000018380.1;Name=WP_000018380.1;gbkey=CDS;product=2%2C3-dihydroxypropane-1-sulfonate exporter;protein_id=WP_000018380.1;transl_table=11 NZ_CP010443.1 RefSeq gene 183511 185547 . - . ID=gene175;Name=SH04_RS00880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00880;old_locus_tag=SH04_00880 NZ_CP010443.1 Protein Homology CDS 183511 185547 . - 0 ID=cds160;Parent=gene175;Dbxref=Genbank:WP_000380843.1;Name=WP_000380843.1;gbkey=CDS;product=alpha-glucosidase YihQ;protein_id=WP_000380843.1;transl_table=11 NZ_CP010443.1 RefSeq gene 185746 186648 . - . ID=gene176;Name=SH04_RS00885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00885;old_locus_tag=SH04_00885 NZ_CP010443.1 Protein Homology CDS 185746 186648 . - 0 ID=cds161;Parent=gene176;Dbxref=Genbank:WP_001295268.1;Name=WP_001295268.1;gbkey=CDS;product=aldose-1-epimerase;protein_id=WP_001295268.1;transl_table=11 NZ_CP010443.1 RefSeq gene 186786 188027 . - . ID=gene177;Name=SH04_RS00890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00890;old_locus_tag=SH04_00890 NZ_CP010443.1 Protein Homology CDS 186786 188027 . - 0 ID=cds162;Parent=gene177;Dbxref=Genbank:WP_000870916.1;Name=WP_000870916.1;gbkey=CDS;product=sulfoquinovose isomerase;protein_id=WP_000870916.1;transl_table=11 NZ_CP010443.1 RefSeq gene 188044 188922 . - . ID=gene178;Name=SH04_RS00895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00895;old_locus_tag=SH04_00895 NZ_CP010443.1 Protein Homology CDS 188044 188922 . - 0 ID=cds163;Parent=gene178;Dbxref=Genbank:WP_001046453.1;Name=WP_001046453.1;gbkey=CDS;product=sulfofructosephosphate aldolase;protein_id=WP_001046453.1;transl_table=11 NZ_CP010443.1 RefSeq gene 188946 189842 . - . ID=gene179;Name=SH04_RS00900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00900;old_locus_tag=SH04_00900 NZ_CP010443.1 Protein Homology CDS 188946 189842 . - 0 ID=cds164;Parent=gene179;Dbxref=Genbank:WP_000718893.1;Name=WP_000718893.1;Note=catalyzes the formation of gamma hydroxybutyrate from succinate semialdehyde;gbkey=CDS;product=3-sulfolactaldehyde reductase;protein_id=WP_000718893.1;transl_table=11 NZ_CP010443.1 RefSeq gene 190010 190906 . + . ID=gene180;Name=SH04_RS00905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00905;old_locus_tag=SH04_00905 NZ_CP010443.1 Protein Homology CDS 190010 190906 . + 0 ID=cds165;Parent=gene180;Dbxref=Genbank:WP_000621656.1;Name=WP_000621656.1;gbkey=CDS;product=sulfofructose kinase;protein_id=WP_000621656.1;transl_table=11 NZ_CP010443.1 RefSeq gene 190940 191725 . + . ID=gene181;Name=SH04_RS00910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00910;old_locus_tag=SH04_00910 NZ_CP010443.1 Protein Homology CDS 190940 191725 . + 0 ID=cds166;Parent=gene181;Dbxref=Genbank:WP_000059678.1;Name=WP_000059678.1;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_000059678.1;transl_table=11 NZ_CP010443.1 RefSeq gene 191824 192423 . + . ID=gene182;Name=SH04_RS00915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00915;old_locus_tag=SH04_00915 NZ_CP010443.1 Protein Homology CDS 191824 192423 . + 0 ID=cds167;Parent=gene182;Dbxref=Genbank:WP_001295269.1;Name=WP_001295269.1;gbkey=CDS;product=alpha-D-glucose-1-phosphate phosphatase YihX;protein_id=WP_001295269.1;transl_table=11 NZ_CP010443.1 RefSeq gene 192417 193289 . + . ID=gene183;Name=SH04_RS00920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00920;old_locus_tag=SH04_00920 NZ_CP010443.1 Protein Homology CDS 192417 193289 . + 0 ID=cds168;Parent=gene183;Dbxref=Genbank:WP_000920762.1;Name=WP_000920762.1;gbkey=CDS;product=membrane protein;protein_id=WP_000920762.1;transl_table=11 NZ_CP010443.1 RefSeq gene 193286 193723 . + . ID=gene184;Name=SH04_RS00925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00925;old_locus_tag=SH04_00925 NZ_CP010443.1 Protein Homology CDS 193286 193723 . + 0 ID=cds169;Parent=gene184;Dbxref=Genbank:WP_000560983.1;Name=WP_000560983.1;Note=hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr)%3B possible defense mechanism against a harmful effect of D-tyrosine;gbkey=CDS;product=D-aminoacyl-tRNA deacylase;protein_id=WP_000560983.1;transl_table=11 NZ_CP010443.1 RefSeq gene 193768 194709 . + . ID=gene185;Name=SH04_RS00930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00930;old_locus_tag=SH04_00930 NZ_CP010443.1 Protein Homology CDS 193768 194709 . + 0 ID=cds170;Parent=gene185;Dbxref=Genbank:WP_001297068.1;Name=WP_001297068.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001297068.1;transl_table=11 NZ_CP010443.1 RefSeq gene 195562 195780 . + . ID=gene186;Name=SH04_RS00935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00935;old_locus_tag=SH04_00935 NZ_CP010443.1 Protein Homology CDS 195562 195780 . + 0 ID=cds171;Parent=gene186;Dbxref=Genbank:WP_001295676.1;Name=WP_001295676.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295676.1;transl_table=11 NZ_CP010443.1 RefSeq gene 195998 196240 . + . ID=gene187;Name=SH04_RS00940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00940;old_locus_tag=SH04_00940 NZ_CP010443.1 Protein Homology CDS 195998 196240 . + 0 ID=cds172;Parent=gene187;Dbxref=Genbank:WP_001086388.1;Name=WP_001086388.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001086388.1;transl_table=11 NZ_CP010443.1 RefSeq gene 196256 196405 . - . ID=gene188;Name=SH04_RS00945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00945;old_locus_tag=SH04_00945 NZ_CP010443.1 Protein Homology CDS 196256 196405 . - 0 ID=cds173;Parent=gene188;Dbxref=Genbank:WP_001442987.1;Name=WP_001442987.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001442987.1;transl_table=11 NZ_CP010443.1 RefSeq gene 196570 197499 . - . ID=gene189;Name=SH04_RS00950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00950;old_locus_tag=SH04_00950 NZ_CP010443.1 Protein Homology CDS 196570 197499 . - 0 ID=cds174;Parent=gene189;Dbxref=Genbank:WP_000027703.1;Name=WP_000027703.1;Note=required for the formation of active formate dehydrogenase;gbkey=CDS;product=protein FdhE;protein_id=WP_000027703.1;transl_table=11 NZ_CP010443.1 RefSeq gene 197496 198131 . - . ID=gene190;Name=SH04_RS00955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00955;old_locus_tag=SH04_00955 NZ_CP010443.1 Protein Homology CDS 197496 198131 . - 0 ID=cds175;Parent=gene190;Dbxref=Genbank:WP_000829013.1;Name=WP_000829013.1;Note=cytochrome b556(FDO) component%3B heme containing;gbkey=CDS;product=formate dehydrogenase cytochrome b556(fdo) subunit;protein_id=WP_000829013.1;transl_table=11 NZ_CP010443.1 RefSeq gene 198128 199030 . - . ID=gene191;Name=SH04_RS00960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00960;old_locus_tag=SH04_00960 NZ_CP010443.1 Protein Homology CDS 198128 199030 . - 0 ID=cds176;Parent=gene191;Dbxref=Genbank:WP_000331377.1;Name=WP_000331377.1;Note=beta subunit%3B involved in the use of formate as an electron donor during aerobic respiration%3B acts to transfer electrons from the major(alpha subunit) to the cytochrome b556(gamma subunit);gbkey=CDS;product=formate dehydrogenase-O iron-sulfur subunit;protein_id=WP_000331377.1;transl_table=11 NZ_CP010443.1 RefSeq gene 199043 201457 . - . ID=gene192;Name=SH04_RS00965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00965;old_locus_tag=SH04_00965 NZ_CP010443.1 Protein Homology CDS 199043 201457 . - 0 ID=cds177;Parent=gene192;Dbxref=Genbank:WP_000181540.1;Name=WP_000181540.1;gbkey=CDS;product=formate dehydrogenase subunit alpha;protein_id=WP_000181540.1;transl_table=11 NZ_CP010443.1 RefSeq gene 201506 202093 . - . ID=gene193;Name=SH04_RS00970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00970;old_locus_tag=SH04_00970 NZ_CP010443.1 Protein Homology CDS 201506 202093 . - 0 ID=cds178;Parent=gene193;Dbxref=Genbank:WP_001198358.1;Name=WP_001198358.1;gbkey=CDS;product=sulfate ABC transporter substrate-binding protein;protein_id=WP_001198358.1;transl_table=11 NZ_CP010443.1 RefSeq gene 202287 203120 . + . ID=gene194;Name=SH04_RS00975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00975;old_locus_tag=SH04_00975 NZ_CP010443.1 Protein Homology CDS 202287 203120 . + 0 ID=cds179;Parent=gene194;Dbxref=Genbank:WP_000753617.1;Name=WP_000753617.1;Note=involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth;gbkey=CDS;product=protein FdhD;protein_id=WP_000753617.1;transl_table=11 NZ_CP010443.1 RefSeq gene 203273 204328 . + . ID=gene195;Name=SH04_RS00980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00980;old_locus_tag=SH04_00980 NZ_CP010443.1 Protein Homology CDS 203273 204328 . + 0 ID=cds180;Parent=gene195;Dbxref=Genbank:WP_001295677.1;Name=WP_001295677.1;gbkey=CDS;product=DUF3829 domain-containing protein;protein_id=WP_001295677.1;transl_table=11 NZ_CP010443.1 RefSeq gene 204378 206126 . - . ID=gene196;Name=SH04_RS00985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00985;old_locus_tag=SH04_00985 NZ_CP010443.1 Protein Homology CDS 204378 206126 . - 0 ID=cds181;Parent=gene196;Dbxref=Genbank:WP_000931299.1;Name=WP_000931299.1;Note=repressor of the frv operon%2C involved in phosphoenolpyruvate:sugar phosphotransferase system;gbkey=CDS;product=frv operon regulator%3B contains a PTS EIIA domain;protein_id=WP_000931299.1;transl_table=11 NZ_CP010443.1 RefSeq gene 206126 207196 . - . ID=gene197;Name=SH04_RS00990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00990;old_locus_tag=SH04_00990 NZ_CP010443.1 Protein Homology CDS 206126 207196 . - 0 ID=cds182;Parent=gene197;Dbxref=Genbank:WP_001019484.1;Name=WP_001019484.1;gbkey=CDS;product=peptidase;protein_id=WP_001019484.1;transl_table=11 NZ_CP010443.1 RefSeq gene 207186 208637 . - . ID=gene198;Name=SH04_RS00995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS00995;old_locus_tag=SH04_00995 NZ_CP010443.1 Protein Homology CDS 207186 208637 . - 0 ID=cds183;Parent=gene198;Dbxref=Genbank:WP_000446023.1;Name=WP_000446023.1;gbkey=CDS;product=fructose-like PTS system EIIBC component;protein_id=WP_000446023.1;transl_table=11 NZ_CP010443.1 RefSeq gene 208648 209094 . - . ID=gene199;Name=SH04_RS01000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01000;old_locus_tag=SH04_01000 NZ_CP010443.1 Protein Homology CDS 208648 209094 . - 0 ID=cds184;Parent=gene199;Dbxref=Genbank:WP_000729595.1;Name=WP_000729595.1;Note=with FrvBRX is part of the phosphoenolpyruvate-dependent sugar phosphotransferase system involved in the transport and phosphorylation of sugars%3B possibly responsible for the sugar specificity of the system;gbkey=CDS;product=fructose-like phosphotransferase enzyme IIA component;protein_id=WP_000729595.1;transl_table=11 NZ_CP010443.1 RefSeq gene 209395 209709 . - . ID=gene200;Name=SH04_RS01005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01005;old_locus_tag=SH04_01005 NZ_CP010443.1 Protein Homology CDS 209395 209709 . - 0 ID=cds185;Parent=gene200;Dbxref=Genbank:WP_000619493.1;Name=WP_000619493.1;gbkey=CDS;product=L-rhamnose mutarotase;protein_id=WP_000619493.1;transl_table=11 NZ_CP010443.1 RefSeq gene 209719 210543 . - . ID=gene201;Name=SH04_RS01010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01010;old_locus_tag=SH04_01010 NZ_CP010443.1 Protein Homology CDS 209719 210543 . - 0 ID=cds186;Parent=gene201;Dbxref=Genbank:WP_001179745.1;Name=WP_001179745.1;gbkey=CDS;product=rhamnulose-1-phosphate aldolase;protein_id=WP_001179745.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 210587 210989 . + . ID=id19;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 210994 212253 . - . ID=gene202;Name=SH04_RS01015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01015;old_locus_tag=SH04_01015 NZ_CP010443.1 Protein Homology CDS 210994 212253 . - 0 ID=cds187;Parent=gene202;Dbxref=Genbank:WP_001311268.1;Name=WP_001311268.1;Note=catalyzes the formation of L-rhamnulose from L-rhamnose;gbkey=CDS;product=L-rhamnose isomerase;protein_id=WP_001311268.1;transl_table=11 NZ_CP010443.1 RefSeq gene 212250 213719 . - . ID=gene203;Name=rhaB;gbkey=Gene;gene=rhaB;gene_biotype=protein_coding;locus_tag=SH04_RS01020;old_locus_tag=SH04_01020 NZ_CP010443.1 Protein Homology CDS 212250 213719 . - 0 ID=cds188;Parent=gene203;Dbxref=Genbank:WP_000144073.1;Name=WP_000144073.1;Note=catalyzes the ATP-dependent phosphorylation of rhamnulose;gbkey=CDS;gene=rhaB;product=rhamnulokinase;protein_id=WP_000144073.1;transl_table=11 NZ_CP010443.1 RefSeq gene 213798 213947 . + . ID=gene204;Name=SH04_RS01025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01025;old_locus_tag=SH04_01025 NZ_CP010443.1 Protein Homology CDS 213798 213947 . + 0 ID=cds189;Parent=gene204;Dbxref=Genbank:WP_000510376.1;Name=WP_000510376.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000510376.1;transl_table=11 NZ_CP010443.1 RefSeq gene 214007 214843 . + . ID=gene205;Name=SH04_RS01030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01030;old_locus_tag=SH04_01030 NZ_CP010443.1 Protein Homology CDS 214007 214843 . + 0 ID=cds190;Parent=gene205;Dbxref=Genbank:WP_000217137.1;Name=WP_000217137.1;gbkey=CDS;product=transcriptional activator RhaS;protein_id=WP_000217137.1;transl_table=11 NZ_CP010443.1 RefSeq gene 214917 215765 . + . ID=gene206;Name=SH04_RS01035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01035;old_locus_tag=SH04_01035 NZ_CP010443.1 Protein Homology CDS 214917 215765 . + 0 ID=cds191;Parent=gene206;Dbxref=Genbank:WP_001336056.1;Name=WP_001336056.1;Note=activates the expression of rhaRS in response to L-rhamnose;gbkey=CDS;product=HTH-type transcriptional activator RhaR;protein_id=WP_001336056.1;transl_table=11 NZ_CP010443.1 RefSeq gene 215762 216796 . - . ID=gene207;Name=SH04_RS01040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01040;old_locus_tag=SH04_01040 NZ_CP010443.1 Protein Homology CDS 215762 216796 . - 0 ID=cds192;Parent=gene207;Dbxref=Genbank:WP_000063526.1;Name=WP_000063526.1;Note=transports L-rhamnose and L-lyxose into the cell;gbkey=CDS;product=l-rhamnose-proton symporter;protein_id=WP_000063526.1;transl_table=11 NZ_CP010443.1 RefSeq gene 217081 217701 . + . ID=gene208;Name=SH04_RS01045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01045;old_locus_tag=SH04_01045 NZ_CP010443.1 Protein Homology CDS 217081 217701 . + 0 ID=cds193;Parent=gene208;Dbxref=Genbank:WP_000122641.1;Name=WP_000122641.1;Note=SodA%3B manganese binding%3B only present under aerobic conditions%3B destroys free radicals;gbkey=CDS;product=superoxide dismutase [Mn];protein_id=WP_000122641.1;transl_table=11 NZ_CP010443.1 RefSeq gene 217742 217858 . - . ID=gene209;Name=SH04_RS01050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01050;old_locus_tag=SH04_01050 NZ_CP010443.1 Protein Homology CDS 217742 217858 . - 0 ID=cds194;Parent=gene209;Dbxref=Genbank:WP_000598314.1;Name=WP_000598314.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000598314.1;transl_table=11 NZ_CP010443.1 RefSeq gene 217961 218944 . + . ID=gene210;Name=SH04_RS01055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01055;old_locus_tag=SH04_01055 NZ_CP010443.1 Protein Homology CDS 217961 218944 . + 0 ID=cds195;Parent=gene210;Dbxref=Genbank:WP_001166063.1;Name=WP_001166063.1;Note=transports degraded pectin products into the bacterial cell;gbkey=CDS;product=2-keto-3-deoxygluconate permease;protein_id=WP_001166063.1;transl_table=11 NZ_CP010443.1 RefSeq gene 219093 219767 . + . ID=gene211;Name=SH04_RS01060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01060;old_locus_tag=SH04_01060 NZ_CP010443.1 Protein Homology CDS 219093 219767 . + 0 ID=cds196;Parent=gene211;Dbxref=Genbank:WP_001270260.1;Name=WP_001270260.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001270260.1;transl_table=11 NZ_CP010443.1 RefSeq gene 219873 221246 . - . ID=gene212;Name=cpxA;gbkey=Gene;gene=cpxA;gene_biotype=protein_coding;locus_tag=SH04_RS01065;old_locus_tag=SH04_01065 NZ_CP010443.1 Protein Homology CDS 219873 221246 . - 0 ID=cds197;Parent=gene212;Dbxref=Genbank:WP_046377544.1;Name=WP_046377544.1;Note=part of two-component CpxA/CpxR system%3B senses envelope stress%3B upregulates a number of periplasmic folding and trafficking factors;gbkey=CDS;gene=cpxA;product=two-component system sensor histidine kinase;protein_id=WP_046377544.1;transl_table=11 NZ_CP010443.1 RefSeq gene 221243 221941 . - . ID=gene213;Name=SH04_RS01070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01070;old_locus_tag=SH04_01070 NZ_CP010443.1 Protein Homology CDS 221243 221941 . - 0 ID=cds198;Parent=gene213;Dbxref=Genbank:WP_001033722.1;Name=WP_001033722.1;Note=response regulator in two-component regulatory system with CpxA%3B part of the envelope stress response system;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001033722.1;transl_table=11 NZ_CP010443.1 RefSeq gene 222091 222591 . + . ID=gene214;Name=cpxP;gbkey=Gene;gene=cpxP;gene_biotype=protein_coding;locus_tag=SH04_RS01075;old_locus_tag=SH04_01075 NZ_CP010443.1 Protein Homology CDS 222091 222591 . + 0 ID=cds199;Parent=gene214;Dbxref=Genbank:WP_001223800.1;Name=WP_001223800.1;Note=repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA%3B CpxP is degraded by DegP protease especially in the presence of misfolded substrates;gbkey=CDS;gene=cpxP;product=periplasmic protein CpxP;protein_id=WP_001223800.1;transl_table=11 NZ_CP010443.1 RefSeq gene 222740 223642 . + . ID=gene215;Name=fieF;gbkey=Gene;gene=fieF;gene_biotype=protein_coding;gene_synonym=yiiP;locus_tag=SH04_RS01080;old_locus_tag=SH04_01080 NZ_CP010443.1 Protein Homology CDS 222740 223642 . + 0 ID=cds200;Parent=gene215;Dbxref=Genbank:WP_001076742.1;Name=WP_001076742.1;Note=member of cation diffusion facilitator family%3B CDF%3B membrane-bound%3B induced by both zinc and iron%2C but does not induce resistance to zinc%3B can transport zinc(II) in a proton-dependent manner%3B instead this protein induces iron resistance%3B forms dimers;gbkey=CDS;gene=fieF;product=ferrous iron and zinc transporter;protein_id=WP_001076742.1;transl_table=11 NZ_CP010443.1 RefSeq gene 223823 224785 . + . ID=gene216;Name=SH04_RS01085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01085;old_locus_tag=SH04_01085 NZ_CP010443.1 Protein Homology CDS 223823 224785 . + 0 ID=cds201;Parent=gene216;Dbxref=Genbank:WP_000591795.1;Name=WP_000591795.1;Note=catalyzes the formation of D-fructose 1%2C6-bisphosphate from D-fructose 6-phosphate in glycolysis;gbkey=CDS;product=ATP-dependent 6-phosphofructokinase;protein_id=WP_000591795.1;transl_table=11 NZ_CP010443.1 RefSeq gene 225105 226094 . + . ID=gene217;Name=SH04_RS01090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01090;old_locus_tag=SH04_01090 NZ_CP010443.1 Protein Homology CDS 225105 226094 . + 0 ID=cds202;Parent=gene217;Dbxref=Genbank:WP_001045689.1;Name=WP_001045689.1;gbkey=CDS;product=sulfate-binding protein;protein_id=WP_001045689.1;transl_table=11 NZ_CP010443.1 RefSeq gene 226201 226956 . + . ID=gene218;Name=SH04_RS01095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01095;old_locus_tag=SH04_01095 NZ_CP010443.1 Protein Homology CDS 226201 226956 . + 0 ID=cds203;Parent=gene218;Dbxref=Genbank:WP_001326656.1;Name=WP_001326656.1;gbkey=CDS;product=CDP-diacylglycerol pyrophosphatase;protein_id=WP_001326656.1;transl_table=11 NZ_CP010443.1 RefSeq gene 227011 227778 . - . ID=gene219;Name=SH04_RS01100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01100;old_locus_tag=SH04_01100 NZ_CP010443.1 Protein Homology CDS 227011 227778 . - 0 ID=cds204;Parent=gene219;Dbxref=Genbank:WP_001216325.1;Name=WP_001216325.1;Note=Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate;gbkey=CDS;product=triosephosphate isomerase;protein_id=WP_001216325.1;transl_table=11 NZ_CP010443.1 RefSeq gene 227886 228485 . - . ID=gene220;Name=SH04_RS01105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01105;old_locus_tag=SH04_01105 NZ_CP010443.1 Protein Homology CDS 227886 228485 . - 0 ID=cds205;Parent=gene220;Dbxref=Genbank:WP_000802216.1;Name=WP_000802216.1;gbkey=CDS;product=DUF1454 domain-containing protein;protein_id=WP_000802216.1;transl_table=11 NZ_CP010443.1 RefSeq gene 228586 229026 . + . ID=gene221;Name=SH04_RS01110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01110;old_locus_tag=SH04_01110 NZ_CP010443.1 Protein Homology CDS 228586 229026 . + 0 ID=cds206;Parent=gene221;Dbxref=Genbank:WP_000155257.1;Name=WP_000155257.1;gbkey=CDS;product=membrane protein;protein_id=WP_000155257.1;transl_table=11 NZ_CP010443.1 RefSeq gene 229238 229537 . + . ID=gene222;Name=SH04_RS01115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01115;old_locus_tag=SH04_01115 NZ_CP010443.1 Protein Homology CDS 229238 229537 . + 0 ID=cds207;Parent=gene222;Dbxref=Genbank:WP_000655989.1;Name=WP_000655989.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000655989.1;transl_table=11 NZ_CP010443.1 RefSeq gene 229564 229992 . + . ID=gene223;Name=SH04_RS01120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01120;old_locus_tag=SH04_01120 NZ_CP010443.1 Protein Homology CDS 229564 229992 . + 0 ID=cds208;Parent=gene223;Dbxref=Genbank:WP_000323556.1;Name=WP_000323556.1;Note=with UspC and Usp E is involved in resistance to UV radiation;gbkey=CDS;product=universal stress protein D;protein_id=WP_000323556.1;transl_table=11 NZ_CP010443.1 RefSeq gene 229997 230743 . - . ID=gene224;Name=SH04_RS01125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01125;old_locus_tag=SH04_01125 NZ_CP010443.1 Protein Homology CDS 229997 230743 . - 0 ID=cds209;Parent=gene224;Dbxref=Genbank:WP_000796332.1;Name=WP_000796332.1;gbkey=CDS;product=ferredoxin--NADP reductase;protein_id=WP_000796332.1;transl_table=11 NZ_CP010443.1 RefSeq gene 230840 231850 . - . ID=gene225;Name=SH04_RS01130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01130;old_locus_tag=SH04_01130 NZ_CP010443.1 Protein Homology CDS 230840 231850 . - 0 ID=cds210;Parent=gene225;Dbxref=Genbank:WP_001250644.1;Name=WP_001250644.1;gbkey=CDS;product=fructose 1%2C6-bisphosphatase;protein_id=WP_001250644.1;transl_table=11 NZ_CP010443.1 RefSeq gene 231985 233493 . - . ID=gene226;Name=glpK;gbkey=Gene;gene=glpK;gene_biotype=protein_coding;locus_tag=SH04_RS01135;old_locus_tag=SH04_01135 NZ_CP010443.1 Protein Homology CDS 231985 233493 . - 0 ID=cds211;Parent=gene226;Dbxref=Genbank:WP_000136788.1;Name=WP_000136788.1;Note=Converts glycerol and ADP to glycerol-3-phosphate and ADP;gbkey=CDS;gene=glpK;product=glycerol kinase;protein_id=WP_000136788.1;transl_table=11 NZ_CP010443.1 RefSeq gene 233516 234361 . - . ID=gene227;Name=SH04_RS01140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01140;old_locus_tag=SH04_01140 NZ_CP010443.1 Protein Homology CDS 233516 234361 . - 0 ID=cds212;Parent=gene227;Dbxref=Genbank:WP_000084268.1;Name=WP_000084268.1;Note=involved in the transport of glycerol into the cell;gbkey=CDS;product=glycerol uptake facilitator protein;protein_id=WP_000084268.1;transl_table=11 NZ_CP010443.1 RefSeq gene 234792 235031 . + . ID=gene228;Name=SH04_RS01145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01145;old_locus_tag=SH04_01145 NZ_CP010443.1 Protein Homology CDS 234792 235031 . + 0 ID=cds213;Parent=gene228;Dbxref=Genbank:WP_001295521.1;Name=WP_001295521.1;Note=interacts with FisZ and is necessary for Z-ring formation;gbkey=CDS;product=cell division protein ZapB;protein_id=WP_001295521.1;transl_table=11 NZ_CP010443.1 RefSeq gene 235116 235601 . - . ID=gene229;Name=SH04_RS01150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01150;old_locus_tag=SH04_01150 NZ_CP010443.1 Protein Homology CDS 235116 235601 . - 0 ID=cds214;Parent=gene229;Dbxref=Genbank:WP_000872908.1;Name=WP_000872908.1;Note=regulator of RNase E%3B increases half-life and abundance of RNAs%3B interacts with RNase E possibly inhibiting catalytic activity;gbkey=CDS;product=ribonuclease E activity regulator RraA;protein_id=WP_000872908.1;transl_table=11 NZ_CP010443.1 RefSeq gene 235694 236620 . - . ID=gene230;Name=SH04_RS01155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01155;old_locus_tag=SH04_01155 NZ_CP010443.1 Protein Homology CDS 235694 236620 . - 0 ID=cds215;Parent=gene230;Dbxref=Genbank:WP_000139496.1;Name=WP_000139496.1;Note=catalyzes the formation of dimethylmenaquinone from 1%2C4-dihydroxy-2-naphthoate and octaprenyl diphosphate;gbkey=CDS;product=1%2C4-dihydroxy-2-naphthoate octaprenyltransferase;protein_id=WP_000139496.1;transl_table=11 NZ_CP010443.1 RefSeq gene 236687 238018 . - . ID=gene231;Name=hslU;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=SH04_RS01160;old_locus_tag=SH04_01160 NZ_CP010443.1 Protein Homology CDS 236687 238018 . - 0 ID=cds216;Parent=gene231;Dbxref=Genbank:WP_001293341.1;Name=WP_001293341.1;Note=heat shock protein involved in degradation of misfolded proteins;gbkey=CDS;gene=hslU;product=ATP-dependent protease ATPase subunit HslU;protein_id=WP_001293341.1;transl_table=11 NZ_CP010443.1 RefSeq gene 238028 238558 . - . ID=gene232;Name=SH04_RS01165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01165;old_locus_tag=SH04_01165 NZ_CP010443.1 Protein Homology CDS 238028 238558 . - 0 ID=cds217;Parent=gene232;Dbxref=Genbank:WP_000208242.1;Name=WP_000208242.1;gbkey=CDS;product=ATP-dependent protease subunit HslV;protein_id=WP_000208242.1;transl_table=11 NZ_CP010443.1 RefSeq gene 238651 239505 . - . ID=gene233;Name=SH04_RS01170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01170;old_locus_tag=SH04_01170 NZ_CP010443.1 Protein Homology CDS 238651 239505 . - 0 ID=cds218;Parent=gene233;Dbxref=Genbank:WP_001325202.1;Name=WP_001325202.1;gbkey=CDS;product=cell division protein FtsN;protein_id=WP_001325202.1;transl_table=11 NZ_CP010443.1 RefSeq gene 239702 240727 . - . ID=gene234;Name=SH04_RS01175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01175;old_locus_tag=SH04_01175 NZ_CP010443.1 Protein Homology CDS 239702 240727 . - 0 ID=cds219;Parent=gene234;Dbxref=Genbank:WP_000644904.1;Name=WP_000644904.1;Note=negatively controls the transcription initiation of genes such as deoCABD%2C udp%2C and cdd encoding catabolizing enzymes and nupC%2C nupG%2C and tsx encoding transporting and pore-forming proteins;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000644904.1;transl_table=11 NZ_CP010443.1 RefSeq gene 240883 243081 . - . ID=gene235;Name=SH04_RS01180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01180;old_locus_tag=SH04_01180 NZ_CP010443.1 Protein Homology CDS 240883 243081 . - 0 ID=cds220;Parent=gene235;Dbxref=Genbank:WP_001301269.1;Name=WP_001301269.1;Note=binding of PriA to forked DNA starts the assembly of the primosome%2C also possesses 3'-5' helicase activity;gbkey=CDS;product=primosomal protein N';protein_id=WP_001301269.1;transl_table=11 NZ_CP010443.1 RefSeq gene 243284 243496 . + . ID=gene236;Name=rpmE;gbkey=Gene;gene=rpmE;gene_biotype=protein_coding;locus_tag=SH04_RS01185;old_locus_tag=SH04_01185 NZ_CP010443.1 Protein Homology CDS 243284 243496 . + 0 ID=cds221;Parent=gene236;Dbxref=Genbank:WP_000710769.1;Name=WP_000710769.1;Note=RpmE%3B there appears to be two types of ribosomal proteins L31 in bacterial genomes%3B some contain a CxxC motif while others do not%3B Bacillus subtilis has both types%3B the proteins in this cluster have the CXXC motif%3B RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth%3B expression of ytiA is controlled by a zinc-specific transcriptional repressor%3B RpmE contains one zinc ion and a CxxC motif is responsible for this binding%3B forms an RNP particle along with proteins L5%2C L18%2C and L25 and 5S rRNA%3B found crosslinked to L2 and L25 and EF-G%3B may be near the peptidyltransferase site of the 50S ribosome;gbkey=CDS;gene=rpmE;product=50S ribosomal protein L31;protein_id=WP_000710769.1;transl_table=11 NZ_CP010443.1 RefSeq gene 243557 244165 . - . ID=gene237;Name=SH04_RS01190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01190;old_locus_tag=SH04_01190 NZ_CP010443.1 Protein Homology CDS 243557 244165 . - 0 ID=cds222;Parent=gene237;Dbxref=Genbank:WP_000797353.1;Name=WP_000797353.1;gbkey=CDS;product=lipid binding hydrolase DUF830 family protein;protein_id=WP_000797353.1;transl_table=11 NZ_CP010443.1 RefSeq gene 244349 244666 . - . ID=gene238;Name=SH04_RS01195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01195;old_locus_tag=SH04_01195 NZ_CP010443.1 Protein Homology CDS 244349 244666 . - 0 ID=cds223;Parent=gene238;Dbxref=Genbank:WP_000852812.1;Name=WP_000852812.1;Note=when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis;gbkey=CDS;product=met repressor;protein_id=WP_000852812.1;transl_table=11 NZ_CP010443.1 RefSeq gene 244943 246101 . + . ID=gene239;Name=SH04_RS01200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS01200;pseudo=true NZ_CP010443.1 Protein Homology CDS 244943 246101 . + 0 ID=cds224;Parent=gene239;Note=catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine;exception=annotated by transcript or proteomic data;gbkey=CDS;product=cystathionine gamma-synthase;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 246104 248536 . + . ID=gene240;Name=metL;gbkey=Gene;gene=metL;gene_biotype=protein_coding;gene_synonym=metM;locus_tag=SH04_RS01205;old_locus_tag=SH04_01205 NZ_CP010443.1 Protein Homology CDS 246104 248536 . + 0 ID=cds225;Parent=gene240;Dbxref=Genbank:WP_000110772.1;Name=WP_000110772.1;Note=multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine%3B functions in a number of amino acid biosynthetic pathways;gbkey=CDS;gene=metL;product=bifunctional aspartokinase/homoserine dehydrogenase 2;protein_id=WP_000110772.1;transl_table=11 NZ_CP010443.1 RefSeq gene 248675 248809 . - . ID=gene241;Name=SH04_RS01210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01210;old_locus_tag=SH04_01210 NZ_CP010443.1 Protein Homology CDS 248675 248809 . - 0 ID=cds226;Parent=gene241;Dbxref=Genbank:WP_000660586.1;Name=WP_000660586.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000660586.1;transl_table=11 NZ_CP010443.1 RefSeq gene 248885 249775 . + . ID=gene242;Name=metF;gbkey=Gene;gene=metF;gene_biotype=protein_coding;locus_tag=SH04_RS01215;old_locus_tag=SH04_01215 NZ_CP010443.1 Protein Homology CDS 248885 249775 . + 0 ID=cds227;Parent=gene242;Dbxref=Genbank:WP_000007523.1;Name=WP_000007523.1;Note=MTHFR%3B catalyzes NADH-linked reduction of 5%2C10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor;gbkey=CDS;gene=metF;product=5%2C10-methylenetetrahydrofolate reductase;protein_id=WP_000007523.1;transl_table=11 NZ_CP010443.1 RefSeq gene 250104 252284 . + . ID=gene243;Name=SH04_RS01220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01220;old_locus_tag=SH04_01220 NZ_CP010443.1 Protein Homology CDS 250104 252284 . + 0 ID=cds228;Parent=gene243;Dbxref=Genbank:WP_001295695.1;Name=WP_001295695.1;gbkey=CDS;product=catalase-peroxidase;protein_id=WP_001295695.1;transl_table=11 NZ_CP010443.1 RefSeq gene 252377 253282 . + . ID=gene244;Name=SH04_RS01225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01225;old_locus_tag=SH04_01225 NZ_CP010443.1 Protein Homology CDS 252377 253282 . + 0 ID=cds229;Parent=gene244;Dbxref=Genbank:WP_001271242.1;Name=WP_001271242.1;gbkey=CDS;product=permease;protein_id=WP_001271242.1;transl_table=11 NZ_CP010443.1 RefSeq gene 253309 253926 . - . ID=gene245;Name=SH04_RS01230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01230;old_locus_tag=SH04_01230 NZ_CP010443.1 Protein Homology CDS 253309 253926 . - 0 ID=cds230;Parent=gene245;Dbxref=Genbank:WP_000647891.1;Name=WP_000647891.1;gbkey=CDS;product=DUF1287 domain-containing protein;protein_id=WP_000647891.1;transl_table=11 NZ_CP010443.1 RefSeq gene 254038 254157 . - . ID=gene246;Name=SH04_RS01235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01235;old_locus_tag=SH04_01235 NZ_CP010443.1 Protein Homology CDS 254038 254157 . - 0 ID=cds231;Parent=gene246;Dbxref=Genbank:WP_001442985.1;Name=WP_001442985.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001442985.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 254057 254164 . + . ID=id20;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 254201 255304 . - . ID=gene247;Name=gldA;gbkey=Gene;gene=gldA;gene_biotype=protein_coding;locus_tag=SH04_RS01240;old_locus_tag=SH04_01240 NZ_CP010443.1 Protein Homology CDS 254201 255304 . - 0 ID=cds232;Parent=gene247;Dbxref=Genbank:WP_000374004.1;Name=WP_000374004.1;Note=forms dimers and octamers%3B involved in conversion of glycerol to dihydroxy-acetone;gbkey=CDS;gene=gldA;product=glycerol dehydrogenase;protein_id=WP_000374004.1;transl_table=11 NZ_CP010443.1 RefSeq gene 255315 255977 . - . ID=gene248;Name=SH04_RS01245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01245;old_locus_tag=SH04_01245 NZ_CP010443.1 Protein Homology CDS 255315 255977 . - 0 ID=cds233;Parent=gene248;Dbxref=Genbank:WP_000424840.1;Name=WP_000424840.1;Note=similar to transaldolase from Escherichia coli%3B many organisms have multiple copies;gbkey=CDS;product=fructose-6-phosphate aldolase 2;protein_id=WP_000424840.1;transl_table=11 NZ_CP010443.1 RefSeq gene 255989 258490 . - . ID=gene249;Name=SH04_RS01250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01250;old_locus_tag=SH04_01250 NZ_CP010443.1 Protein Homology CDS 255989 258490 . - 0 ID=cds234;Parent=gene249;Dbxref=Genbank:WP_001174077.1;Name=WP_001174077.1;Note=Phosphotransferase system%2C enzyme I%3B transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein HPr%3B HPr transfers the phosphoryl group to subunit A%3B subunit IIA transfers a phosphoryl group to subunit IIB%3B subunit IIB transfers the phosphoryl group to the substrate%3B part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active-transport system;gbkey=CDS;product=multiphosphoryl transfer protein 2;protein_id=WP_001174077.1;transl_table=11 NZ_CP010443.1 RefSeq gene 258799 259878 . + . ID=gene250;Name=SH04_RS01255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01255;old_locus_tag=SH04_01255 NZ_CP010443.1 Protein Homology CDS 258799 259878 . + 0 ID=cds235;Parent=gene250;Dbxref=Genbank:WP_001004446.1;Name=WP_001004446.1;gbkey=CDS;product=fructose-like permease IIC component 2;protein_id=WP_001004446.1;transl_table=11 NZ_CP010443.1 RefSeq gene 259893 260213 . + . ID=gene251;Name=SH04_RS01260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01260;old_locus_tag=SH04_01260 NZ_CP010443.1 Protein Homology CDS 259893 260213 . + 0 ID=cds236;Parent=gene251;Dbxref=Genbank:WP_000161265.1;Name=WP_000161265.1;Note=FrwB with FrwC%2C FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell%3B cytoplasmic protein that interacts with complex EIIA%3B contains the second phosphorylation site of the PTS;gbkey=CDS;product=fructose-like phosphotransferase enzyme IIB component 2;protein_id=WP_000161265.1;transl_table=11 NZ_CP010443.1 RefSeq gene 260264 262561 . + . ID=gene252;Name=pflD;gbkey=Gene;gene=pflD;gene_biotype=protein_coding;locus_tag=SH04_RS01265;old_locus_tag=SH04_01265 NZ_CP010443.1 Protein Homology CDS 260264 262561 . + 0 ID=cds237;Parent=gene252;Dbxref=Genbank:WP_000184811.1;Name=WP_000184811.1;Note=involved in production of D-lactate from glucose under microaerobic conditions%3B cytoplasmic protein;gbkey=CDS;gene=pflD;product=formate acetyltransferase 2;protein_id=WP_000184811.1;transl_table=11 NZ_CP010443.1 RefSeq gene 262527 263405 . + . ID=gene253;Name=SH04_RS01270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01270;old_locus_tag=SH04_01270 NZ_CP010443.1 Protein Homology CDS 262527 263405 . + 0 ID=cds238;Parent=gene253;Dbxref=Genbank:WP_000204105.1;Name=WP_000204105.1;gbkey=CDS;product=pyruvate formate-lyase 2-activating enzyme;protein_id=WP_000204105.1;transl_table=11 NZ_CP010443.1 RefSeq gene 263407 263748 . + . ID=gene254;Name=SH04_RS01275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01275;old_locus_tag=SH04_01275 NZ_CP010443.1 Protein Homology CDS 263407 263748 . + 0 ID=cds239;Parent=gene254;Dbxref=Genbank:WP_000323846.1;Name=WP_000323846.1;Note=FrwD with FrwB%2C FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell%3B phosphorylated by EIIA%3B FrwB homolog;gbkey=CDS;product=fructose-like phosphotransferase enzyme IIB component 3;protein_id=WP_000323846.1;transl_table=11 NZ_CP010443.1 RefSeq gene 263735 264586 . - . ID=gene255;Name=SH04_RS01280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01280;old_locus_tag=SH04_01280 NZ_CP010443.1 Protein Homology CDS 263735 264586 . - 0 ID=cds240;Parent=gene255;Dbxref=Genbank:WP_000274636.1;Name=WP_000274636.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_000274636.1;transl_table=11 NZ_CP010443.1 RefSeq gene 264801 266534 . - . ID=gene256;Name=SH04_RS01285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01285;old_locus_tag=SH04_01285 NZ_CP010443.1 Protein Homology CDS 264801 266534 . - 0 ID=cds241;Parent=gene256;Dbxref=Genbank:WP_000556306.1;Name=WP_000556306.1;gbkey=CDS;product=phosphoethanolamine transferase EptC;protein_id=WP_000556306.1;transl_table=11 NZ_CP010443.1 RefSeq gene 266716 269367 . - . ID=gene257;Name=SH04_RS01290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01290;old_locus_tag=SH04_01290 NZ_CP010443.1 Protein Homology CDS 266716 269367 . - 0 ID=cds242;Parent=gene257;Dbxref=Genbank:WP_001005586.1;Name=WP_001005586.1;Note=catalyzes the formation of oxaloacetate from phosphoenolpyruvate;gbkey=CDS;product=phosphoenolpyruvate carboxylase;protein_id=WP_001005586.1;transl_table=11 NZ_CP010443.1 RefSeq gene 269585 269977 . - . ID=gene258;Name=SH04_RS01295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01295;old_locus_tag=SH04_01295 NZ_CP010443.1 Protein Homology CDS 269585 269977 . - 0 ID=cds243;Parent=gene258;Dbxref=Genbank:WP_000880425.1;Name=WP_000880425.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000880425.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 269615 269962 . + . ID=id21;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 269965 271116 . - . ID=gene259;Name=SH04_RS01300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01300;old_locus_tag=SH04_01300 NZ_CP010443.1 Protein Homology CDS 269965 271116 . - 0 ID=cds244;Parent=gene259;Dbxref=Genbank:WP_001298964.1;Name=WP_001298964.1;Note=catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis;gbkey=CDS;product=acetylornithine deacetylase;protein_id=WP_001298964.1;transl_table=11 NZ_CP010443.1 RefSeq gene 271270 272274 . + . ID=gene260;Name=SH04_RS01305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01305;old_locus_tag=SH04_01305 NZ_CP010443.1 Protein Homology CDS 271270 272274 . + 0 ID=cds245;Parent=gene260;Dbxref=Genbank:WP_000935370.1;Name=WP_000935370.1;gbkey=CDS;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=WP_000935370.1;transl_table=11 NZ_CP010443.1 RefSeq gene 272285 273058 . + . ID=gene261;Name=SH04_RS01310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01310;old_locus_tag=SH04_01310 NZ_CP010443.1 Protein Homology CDS 272285 273058 . + 0 ID=cds246;Parent=gene261;Dbxref=Genbank:WP_001295507.1;Name=WP_001295507.1;gbkey=CDS;product=acetylglutamate kinase;protein_id=WP_001295507.1;transl_table=11 NZ_CP010443.1 RefSeq gene 273119 274492 . + . ID=gene262;Name=SH04_RS01315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01315;old_locus_tag=SH04_01315 NZ_CP010443.1 Protein Homology CDS 273119 274492 . + 0 ID=cds247;Parent=gene262;Dbxref=Genbank:WP_001230087.1;Name=WP_001230087.1;Note=catalyzes the formation of arginine from (N-L-arginino)succinate;gbkey=CDS;product=argininosuccinate lyase;protein_id=WP_001230087.1;transl_table=11 NZ_CP010443.1 RefSeq gene 274759 275676 . + . ID=gene263;Name=SH04_RS01320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01320;old_locus_tag=SH04_01320 NZ_CP010443.1 Protein Homology CDS 274759 275676 . + 0 ID=cds248;Parent=gene263;Dbxref=Genbank:WP_001025939.1;Name=WP_001025939.1;Note=Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG%2C gor%2C ahpC%2C ahpF%2C oxyS%2C dps%2C fur and grxA;gbkey=CDS;product=hydrogen peroxide-inducible genes activator;protein_id=WP_001025939.1;transl_table=11 NZ_CP010443.1 RefSeq gene 275659 277059 . - . ID=gene264;Name=SH04_RS01325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01325;old_locus_tag=SH04_01325 NZ_CP010443.1 Protein Homology CDS 275659 277059 . - 0 ID=cds249;Parent=gene264;Dbxref=Genbank:WP_001120810.1;Name=WP_001120810.1;Note=catalyzes the conversion of NADPH to NADH;gbkey=CDS;product=soluble pyridine nucleotide transhydrogenase;protein_id=WP_001120810.1;transl_table=11 NZ_CP010443.1 RefSeq gene 277393 278040 . + . ID=gene265;Name=SH04_RS01330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01330;old_locus_tag=SH04_01330 NZ_CP010443.1 Protein Homology CDS 277393 278040 . + 0 ID=cds250;Parent=gene265;Dbxref=Genbank:WP_001300495.1;Name=WP_001300495.1;Note=negatively controls the expression of fabA and fabB%2C genes involved in the unsaturated fatty acid biosynthesis;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001300495.1;transl_table=11 NZ_CP010443.1 RefSeq gene 278040 278399 . + . ID=gene266;Name=SH04_RS01335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01335;old_locus_tag=SH04_01335 NZ_CP010443.1 Protein Homology CDS 278040 278399 . + 0 ID=cds251;Parent=gene266;Dbxref=Genbank:WP_000806411.1;Name=WP_000806411.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000806411.1;transl_table=11 NZ_CP010443.1 RefSeq gene 278439 279539 . - . ID=gene267;Name=SH04_RS01340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01340;old_locus_tag=SH04_01340 NZ_CP010443.1 Protein Homology CDS 278439 279539 . - 0 ID=cds252;Parent=gene267;Dbxref=Genbank:WP_000187022.1;Name=WP_000187022.1;Note=catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs;gbkey=CDS;product=tRNA/tmRNA (uracil-C(5))-methyltransferase;protein_id=WP_000187022.1;transl_table=11 NZ_CP010443.1 RefSeq gene 279908 281752 . + . ID=gene268;Name=btuB;gbkey=Gene;gene=btuB;gene_biotype=protein_coding;locus_tag=SH04_RS01345;old_locus_tag=SH04_01345 NZ_CP010443.1 Protein Homology CDS 279908 281752 . + 0 ID=cds253;Parent=gene268;Dbxref=Genbank:WP_000591359.1;Name=WP_000591359.1;Note=involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space;gbkey=CDS;gene=btuB;product=vitamin B12 transporter BtuB;protein_id=WP_000591359.1;transl_table=11 NZ_CP010443.1 RefSeq gene 281766 282554 . + . ID=gene269;Name=SH04_RS01350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01350;old_locus_tag=SH04_01350 NZ_CP010443.1 Protein Homology CDS 281766 282554 . + 0 ID=cds254;Parent=gene269;Dbxref=Genbank:WP_001301274.1;Name=WP_001301274.1;Note=converts L-glutamate to D-glutamate%2C a component of peptidoglycan;gbkey=CDS;product=glutamate racemase;protein_id=WP_001301274.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 282568 288146 . + . ID=id22;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 282926 284481 . + . ID=gene270;Name=SH04_RS01355;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS01355;old_locus_tag=SH04_01355 NZ_CP010443.1 RefSeq rRNA 282926 284481 . + . ID=rna15;Parent=gene270;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010443.1 RefSeq exon 282926 284481 . + . ID=id23;Parent=rna15;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010443.1 RefSeq gene 284555 284630 . + . ID=gene271;Name=SH04_RS01360;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS01360;old_locus_tag=SH04_01360 NZ_CP010443.1 tRNAscan-SE tRNA 284555 284630 . + . ID=rna16;Parent=gene271;anticodon=(pos:284589..284591);gbkey=tRNA;product=tRNA-Glu NZ_CP010443.1 tRNAscan-SE exon 284555 284630 . + . ID=id24;Parent=rna16;anticodon=(pos:284589..284591);gbkey=tRNA;product=tRNA-Glu NZ_CP010443.1 RefSeq gene 284815 287742 . + . ID=gene272;Name=SH04_RS01365;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS01365;old_locus_tag=SH04_01365 NZ_CP010443.1 RefSeq rRNA 284815 287742 . + . ID=rna17;Parent=gene272;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010443.1 RefSeq exon 284815 287742 . + . ID=id25;Parent=rna17;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010443.1 RefSeq gene 287820 287935 . + . ID=gene273;Name=SH04_RS01370;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS01370;old_locus_tag=SH04_01370 NZ_CP010443.1 cmsearch rRNA 287820 287935 . + . ID=rna18;Parent=gene273;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 cmsearch exon 287820 287935 . + . ID=id26;Parent=rna18;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 RefSeq gene 288238 289266 . + . ID=gene274;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=SH04_RS01375;old_locus_tag=SH04_01375 NZ_CP010443.1 Protein Homology CDS 288238 289266 . + 0 ID=cds255;Parent=gene274;Dbxref=Genbank:WP_001016699.1;Name=WP_001016699.1;Note=catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis;gbkey=CDS;gene=murB;product=UDP-N-acetylenolpyruvoylglucosamine reductase;protein_id=WP_001016699.1;transl_table=11 NZ_CP010443.1 RefSeq gene 289263 290228 . + . ID=gene275;Name=SH04_RS01380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01380;old_locus_tag=SH04_01380 NZ_CP010443.1 Protein Homology CDS 289263 290228 . + 0 ID=cds256;Parent=gene275;Dbxref=Genbank:WP_000654630.1;Name=WP_000654630.1;Note=catalyzes the formation of biotinyl-5'-AMP%2C also acts as a transcriptional repressor of the biotin operon;gbkey=CDS;product=bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor;protein_id=WP_000654630.1;transl_table=11 NZ_CP010443.1 RefSeq gene 290257 291213 . - . ID=gene276;Name=SH04_RS01385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01385;old_locus_tag=SH04_01385 NZ_CP010443.1 Protein Homology CDS 290257 291213 . - 0 ID=cds257;Parent=gene276;Dbxref=Genbank:WP_001351265.1;Name=WP_001351265.1;gbkey=CDS;product=type I pantothenate kinase;protein_id=WP_001351265.1;transl_table=11 NZ_CP010443.1 RefSeq gene 291394 291549 . - . ID=gene277;Name=SH04_RS01390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01390;old_locus_tag=SH04_01390 NZ_CP010443.1 Protein Homology CDS 291394 291549 . - 0 ID=cds258;Parent=gene277;Dbxref=Genbank:WP_001303748.1;Name=WP_001303748.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303748.1;transl_table=11 NZ_CP010443.1 RefSeq gene 291569 291644 . + . ID=gene278;Name=SH04_RS01395;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS01395;old_locus_tag=SH04_01395 NZ_CP010443.1 tRNAscan-SE tRNA 291569 291644 . + . ID=rna19;Parent=gene278;anticodon=(pos:291602..291604);gbkey=tRNA;product=tRNA-Thr NZ_CP010443.1 tRNAscan-SE exon 291569 291644 . + . ID=id27;Parent=rna19;anticodon=(pos:291602..291604);gbkey=tRNA;product=tRNA-Thr NZ_CP010443.1 RefSeq gene 291653 291737 . + . ID=gene279;Name=SH04_RS01400;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS01400;old_locus_tag=SH04_01400 NZ_CP010443.1 tRNAscan-SE tRNA 291653 291737 . + . ID=rna20;Parent=gene279;anticodon=(pos:291687..291689);gbkey=tRNA;product=tRNA-Tyr NZ_CP010443.1 tRNAscan-SE exon 291653 291737 . + . ID=id28;Parent=rna20;anticodon=(pos:291687..291689);gbkey=tRNA;product=tRNA-Tyr NZ_CP010443.1 RefSeq gene 291854 291928 . + . ID=gene280;Name=SH04_RS01405;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS01405;old_locus_tag=SH04_01405 NZ_CP010443.1 tRNAscan-SE tRNA 291854 291928 . + . ID=rna21;Parent=gene280;anticodon=(pos:291887..291889);gbkey=tRNA;product=tRNA-Gly NZ_CP010443.1 tRNAscan-SE exon 291854 291928 . + . ID=id29;Parent=rna21;anticodon=(pos:291887..291889);gbkey=tRNA;product=tRNA-Gly NZ_CP010443.1 RefSeq gene 291935 292010 . + . ID=gene281;Name=SH04_RS01410;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS01410;old_locus_tag=SH04_01410 NZ_CP010443.1 tRNAscan-SE tRNA 291935 292010 . + . ID=rna22;Parent=gene281;anticodon=(pos:291968..291970);gbkey=tRNA;product=tRNA-Thr NZ_CP010443.1 tRNAscan-SE exon 291935 292010 . + . ID=id30;Parent=rna22;anticodon=(pos:291968..291970);gbkey=tRNA;product=tRNA-Thr NZ_CP010443.1 RefSeq gene 292125 293309 . + . ID=gene282;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=SH04_RS01415;old_locus_tag=SH04_01415 NZ_CP010443.1 Protein Homology CDS 292125 293309 . + 0 ID=cds259;Parent=gene282;Dbxref=Genbank:WP_000031784.1;Name=WP_000031784.1;Note=EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu;gbkey=CDS;gene=tuf;product=translation elongation factor EF-Tu 2;protein_id=WP_000031784.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 292126 293311 . + . ID=id31;gbkey=repeat_region;gene=tuf NZ_CP010443.1 RefSeq gene 293539 293922 . + . ID=gene283;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;locus_tag=SH04_RS01420;old_locus_tag=SH04_01420 NZ_CP010443.1 Protein Homology CDS 293539 293922 . + 0 ID=cds260;Parent=gene283;Dbxref=Genbank:WP_001275702.1;Name=WP_001275702.1;Note=forms a complex with SecY and SecG%3B SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane%2C a process driven by ATP and a proton-motive force;gbkey=CDS;gene=secE;product=protein translocase subunit SecE;protein_id=WP_001275702.1;transl_table=11 NZ_CP010443.1 RefSeq gene 293924 294469 . + . ID=gene284;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=SH04_RS01425;old_locus_tag=SH04_01425 NZ_CP010443.1 Protein Homology CDS 293924 294469 . + 0 ID=cds261;Parent=gene284;Dbxref=Genbank:WP_001287516.1;Name=WP_001287516.1;Note=Modulates Rho-dependent transcription termination;gbkey=CDS;gene=nusG;product=transcription termination/antitermination protein NusG;protein_id=WP_001287516.1;transl_table=11 NZ_CP010443.1 RefSeq gene 294628 295056 . + . ID=gene285;Name=SH04_RS01430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01430;old_locus_tag=SH04_01430 NZ_CP010443.1 Protein Homology CDS 294628 295056 . + 0 ID=cds262;Parent=gene285;Dbxref=Genbank:WP_001085926.1;Name=WP_001085926.1;gbkey=CDS;product=50S ribosomal protein L11;protein_id=WP_001085926.1;transl_table=11 NZ_CP010443.1 RefSeq gene 295060 295764 . + . ID=gene286;Name=SH04_RS01435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01435;old_locus_tag=SH04_01435 NZ_CP010443.1 Protein Homology CDS 295060 295764 . + 0 ID=cds263;Parent=gene286;Dbxref=Genbank:WP_001096684.1;Name=WP_001096684.1;gbkey=CDS;product=50S ribosomal protein L1;protein_id=WP_001096684.1;transl_table=11 NZ_CP010443.1 RefSeq gene 296177 296674 . + . ID=gene287;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=SH04_RS01440;old_locus_tag=SH04_01440 NZ_CP010443.1 Protein Homology CDS 296177 296674 . + 0 ID=cds264;Parent=gene287;Dbxref=Genbank:WP_001207201.1;Name=WP_001207201.1;Note=binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit;gbkey=CDS;gene=rplJ;product=50S ribosomal protein L10;protein_id=WP_001207201.1;transl_table=11 NZ_CP010443.1 RefSeq gene 296741 297106 . + . ID=gene288;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=SH04_RS01445;old_locus_tag=SH04_01445 NZ_CP010443.1 Protein Homology CDS 296741 297106 . + 0 ID=cds265;Parent=gene288;Dbxref=Genbank:WP_000028878.1;Name=WP_000028878.1;Note=present in two forms%3B L12 is normal%2C while L7 is aminoacylated at the N-terminal serine%3B the only multicopy ribosomal protein%3B 4:1 ratio of L7/L12 per ribosome%3B two L12 dimers bind L10%3B critically important for translation efficiency and fidelity%3B stimulates GTPase activity of translation factors;gbkey=CDS;gene=rplL;product=50S ribosomal protein L7/L12;protein_id=WP_000028878.1;transl_table=11 NZ_CP010443.1 RefSeq gene 297426 301454 . + . ID=gene289;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=SH04_RS01450;old_locus_tag=SH04_01450 NZ_CP010443.1 Protein Homology CDS 297426 301454 . + 0 ID=cds266;Parent=gene289;Dbxref=Genbank:WP_000263098.1;Name=WP_000263098.1;Note=DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates%3B beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme;gbkey=CDS;gene=rpoB;product=DNA-directed RNA polymerase subunit beta;protein_id=WP_000263098.1;transl_table=11 NZ_CP010443.1 RefSeq gene 301531 305754 . + . ID=gene290;Name=SH04_RS01455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01455;old_locus_tag=SH04_01455 NZ_CP010443.1 Protein Homology CDS 301531 305754 . + 0 ID=cds267;Parent=gene290;Dbxref=Genbank:WP_000653944.1;Name=WP_000653944.1;Note=DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter;gbkey=CDS;product=DNA-directed RNA polymerase subunit beta';protein_id=WP_000653944.1;transl_table=11 NZ_CP010443.1 RefSeq gene 305967 306506 . + . ID=gene291;Name=SH04_RS01460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01460;old_locus_tag=SH04_01460 NZ_CP010443.1 Protein Homology CDS 305967 306506 . + 0 ID=cds268;Parent=gene291;Dbxref=Genbank:WP_001307500.1;Name=WP_001307500.1;gbkey=CDS;product=heat-shock protein C;protein_id=WP_001307500.1;transl_table=11 NZ_CP010443.1 RefSeq gene 306916 308049 . - . ID=gene292;Name=thiH;gbkey=Gene;gene=thiH;gene_biotype=protein_coding;locus_tag=SH04_RS01465;old_locus_tag=SH04_01465 NZ_CP010443.1 Protein Homology CDS 306916 308049 . - 0 ID=cds269;Parent=gene292;Dbxref=Genbank:WP_000847447.1;Name=WP_000847447.1;Note=in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS%3B with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine%2C cysteine and 1-deoxy-D-xylulose-5-phosphate%3B forms a complex with ThiG%3B contains an iron-sulfur center;gbkey=CDS;gene=thiH;product=2-iminoacetate synthase;protein_id=WP_000847447.1;transl_table=11 NZ_CP010443.1 RefSeq gene 308046 308816 . - . ID=gene293;Name=SH04_RS01470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01470;old_locus_tag=SH04_01470 NZ_CP010443.1 Protein Homology CDS 308046 308816 . - 0 ID=cds270;Parent=gene293;Dbxref=Genbank:WP_000944104.1;Name=WP_000944104.1;gbkey=CDS;product=thiazole synthase;protein_id=WP_000944104.1;transl_table=11 NZ_CP010443.1 RefSeq gene 308818 309018 . - . ID=gene294;Name=SH04_RS01475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01475;old_locus_tag=SH04_01475 NZ_CP010443.1 Protein Homology CDS 308818 309018 . - 0 ID=cds271;Parent=gene294;Dbxref=Genbank:WP_001166226.1;Name=WP_001166226.1;Note=with ThiF%2C ThiG%2C and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate;gbkey=CDS;product=thiamine biosynthesis protein ThiS;protein_id=WP_001166226.1;transl_table=11 NZ_CP010443.1 RefSeq gene 309002 309757 . - . ID=gene295;Name=SH04_RS01480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01480;old_locus_tag=SH04_01480 NZ_CP010443.1 Protein Homology CDS 309002 309757 . - 0 ID=cds272;Parent=gene295;Dbxref=Genbank:WP_000999737.1;Name=WP_000999737.1;Note=ATP-dependent adenylate transferase%2C transfers adenyl moiety to the MoeD subunit of molybdopterin synthase;gbkey=CDS;product=thiamine biosynthesis protein ThiS;protein_id=WP_000999737.1;transl_table=11 NZ_CP010443.1 RefSeq gene 309750 310385 . - . ID=gene296;Name=SH04_RS01485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01485;old_locus_tag=SH04_01485 NZ_CP010443.1 Protein Homology CDS 309750 310385 . - 0 ID=cds273;Parent=gene296;Dbxref=Genbank:WP_000284615.1;Name=WP_000284615.1;Note=catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate;gbkey=CDS;product=thiamine-phosphate synthase;protein_id=WP_000284615.1;transl_table=11 NZ_CP010443.1 RefSeq gene 310385 312280 . - . ID=gene297;Name=SH04_RS01490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01490;old_locus_tag=SH04_01490 NZ_CP010443.1 Protein Homology CDS 310385 312280 . - 0 ID=cds274;Parent=gene297;Dbxref=Genbank:WP_001276926.1;Name=WP_001276926.1;Note=catalyzes the formation of 4-amino-2-methyl-5-phosphomethylpyrimidine from 5-amino-1-(5-phospho-D-ribosyl)imidazole and S-adenosyl-L-methionine in thiamine biosynthesis;gbkey=CDS;product=phosphomethylpyrimidine synthase;protein_id=WP_001276926.1;transl_table=11 NZ_CP010443.1 RefSeq gene 312513 312989 . - . ID=gene298;Name=SH04_RS01495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01495;old_locus_tag=SH04_01495 NZ_CP010443.1 Protein Homology CDS 312513 312989 . - 0 ID=cds275;Parent=gene298;Dbxref=Genbank:WP_000934302.1;Name=WP_000934302.1;Note=binds specifically to the major sigma factor sigma 70%3B active in stationary phase;gbkey=CDS;product=regulator of sigma D;protein_id=WP_000934302.1;transl_table=11 NZ_CP010443.1 RefSeq gene 313084 313857 . + . ID=gene299;Name=nudC;gbkey=Gene;gene=nudC;gene_biotype=protein_coding;locus_tag=SH04_RS01500;old_locus_tag=SH04_01500 NZ_CP010443.1 Protein Homology CDS 313084 313857 . + 0 ID=cds276;Parent=gene299;Dbxref=Genbank:WP_000373940.1;Name=WP_000373940.1;Note=can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH%3B requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates;gbkey=CDS;gene=nudC;product=NADH pyrophosphatase;protein_id=WP_000373940.1;transl_table=11 NZ_CP010443.1 RefSeq gene 313897 314961 . + . ID=gene300;Name=hemE;gbkey=Gene;gene=hemE;gene_biotype=protein_coding;locus_tag=SH04_RS01505;old_locus_tag=SH04_01505 NZ_CP010443.1 Protein Homology CDS 313897 314961 . + 0 ID=cds277;Parent=gene300;Dbxref=Genbank:WP_000137657.1;Name=WP_000137657.1;Note=catalyzes the formation of coproporphyrinogen from uroporphyrinogen III;gbkey=CDS;gene=hemE;product=uroporphyrinogen decarboxylase;protein_id=WP_000137657.1;transl_table=11 NZ_CP010443.1 RefSeq gene 314971 315642 . + . ID=gene301;Name=SH04_RS01510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01510;old_locus_tag=SH04_01510 NZ_CP010443.1 Protein Homology CDS 314971 315642 . + 0 ID=cds278;Parent=gene301;Dbxref=Genbank:WP_000362388.1;Name=WP_000362388.1;Note=Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA%3B cleaves DNA containing urea residues%2C AP sites%2C base mismatches%2C insertion/deletion mismatches%2C flaps%2C and pseudo-Y structures;gbkey=CDS;product=endonuclease V;protein_id=WP_000362388.1;transl_table=11 NZ_CP010443.1 RefSeq gene 315685 316275 . + . ID=gene302;Name=SH04_RS01515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01515;old_locus_tag=SH04_01515 NZ_CP010443.1 Protein Homology CDS 315685 316275 . + 0 ID=cds279;Parent=gene302;Dbxref=Genbank:WP_000940106.1;Name=WP_000940106.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000940106.1;transl_table=11 NZ_CP010443.1 RefSeq gene 316462 316734 . + . ID=gene303;Name=SH04_RS01520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01520;old_locus_tag=SH04_01520 NZ_CP010443.1 Protein Homology CDS 316462 316734 . + 0 ID=cds280;Parent=gene303;Dbxref=Genbank:WP_001044513.1;Name=WP_001044513.1;gbkey=CDS;product=DNA-binding protein HU-alpha;protein_id=WP_001044513.1;transl_table=11 NZ_CP010443.1 RefSeq gene 316747 317442 . + . ID=gene304;Name=SH04_RS01525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01525;old_locus_tag=SH04_01525 NZ_CP010443.1 Protein Homology CDS 316747 317442 . + 0 ID=cds281;Parent=gene304;Dbxref=Genbank:WP_001084037.1;Name=WP_001084037.1;gbkey=CDS;product=DUF1481 domain-containing protein;protein_id=WP_001084037.1;transl_table=11 NZ_CP010443.1 RefSeq gene 317444 317869 . - . ID=gene305;Name=zraP;gbkey=Gene;gene=zraP;gene_biotype=protein_coding;locus_tag=SH04_RS01530;old_locus_tag=SH04_01530 NZ_CP010443.1 Protein Homology CDS 317444 317869 . - 0 ID=cds282;Parent=gene305;Dbxref=Genbank:WP_000828222.1;Name=WP_000828222.1;gbkey=CDS;gene=zraP;product=zinc resistance-associated protein;protein_id=WP_000828222.1;transl_table=11 NZ_CP010443.1 RefSeq gene 318107 319504 . + . ID=gene306;Name=SH04_RS01535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01535;old_locus_tag=SH04_01535 NZ_CP010443.1 Protein Homology CDS 318107 319504 . + 0 ID=cds283;Parent=gene306;Dbxref=Genbank:WP_001211892.1;Name=WP_001211892.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_001211892.1;transl_table=11 NZ_CP010443.1 RefSeq gene 319501 320826 . + . ID=gene307;Name=SH04_RS01540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01540;old_locus_tag=SH04_01540 NZ_CP010443.1 Protein Homology CDS 319501 320826 . + 0 ID=cds284;Parent=gene307;Dbxref=Genbank:WP_000148503.1;Name=WP_000148503.1;Note=DNA-binding response regulator in two-component regulatory system with ZraS%3B response regulator/sigma54 interaction protein;gbkey=CDS;product=ZraR family transcriptional regulator;protein_id=WP_000148503.1;transl_table=11 NZ_CP010443.1 RefSeq gene 320823 322112 . - . ID=gene308;Name=SH04_RS01545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01545;old_locus_tag=SH04_01545 NZ_CP010443.1 Protein Homology CDS 320823 322112 . - 0 ID=cds285;Parent=gene308;Dbxref=Genbank:WP_000866800.1;Name=WP_000866800.1;Note=catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis;gbkey=CDS;product=phosphoribosylamine--glycine ligase;protein_id=WP_000866800.1;transl_table=11 NZ_CP010443.1 RefSeq gene 322124 323713 . - . ID=gene309;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=SH04_RS01550;old_locus_tag=SH04_01550 NZ_CP010443.1 Protein Homology CDS 322124 323713 . - 0 ID=cds286;Parent=gene309;Dbxref=Genbank:WP_001187559.1;Name=WP_001187559.1;Note=involved in de novo purine biosynthesis;gbkey=CDS;gene=purH;product=bifunctional purine biosynthesis protein PurH;protein_id=WP_001187559.1;transl_table=11 NZ_CP010443.1 RefSeq gene 323667 323852 . - . ID=gene310;Name=SH04_RS01555;end_range=323852,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS01555;partial=true;pseudo=true NZ_CP010443.1 Protein Homology CDS 323667 323852 . - 0 ID=cds287;Parent=gene310;end_range=323852,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 323786 323989 . - . ID=gene311;Name=SH04_RS01560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01560 NZ_CP010443.1 Protein Homology CDS 323786 323989 . - 0 ID=cds288;Parent=gene311;Dbxref=Genbank:WP_046072938.1;Name=WP_046072938.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_046072938.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 324024 329347 . + . ID=id32;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 324326 325881 . + . ID=gene312;Name=SH04_RS01565;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS01565;old_locus_tag=SH04_01555 NZ_CP010443.1 RefSeq rRNA 324326 325881 . + . ID=rna23;Parent=gene312;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010443.1 RefSeq exon 324326 325881 . + . ID=id33;Parent=rna23;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010443.1 RefSeq gene 325955 326030 . + . ID=gene313;Name=SH04_RS01570;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS01570;old_locus_tag=SH04_01560 NZ_CP010443.1 tRNAscan-SE tRNA 325955 326030 . + . ID=rna24;Parent=gene313;anticodon=(pos:325989..325991);gbkey=tRNA;product=tRNA-Glu NZ_CP010443.1 tRNAscan-SE exon 325955 326030 . + . ID=id34;Parent=rna24;anticodon=(pos:325989..325991);gbkey=tRNA;product=tRNA-Glu NZ_CP010443.1 RefSeq gene 326215 329145 . + . ID=gene314;Name=SH04_RS01575;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS01575;old_locus_tag=SH04_01565 NZ_CP010443.1 RefSeq rRNA 326215 329145 . + . ID=rna25;Parent=gene314;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010443.1 RefSeq exon 326215 329145 . + . ID=id35;Parent=rna25;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010443.1 RefSeq gene 329223 329338 . + . ID=gene315;Name=SH04_RS01580;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS01580;old_locus_tag=SH04_01570 NZ_CP010443.1 cmsearch rRNA 329223 329338 . + . ID=rna26;Parent=gene315;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 cmsearch exon 329223 329338 . + . ID=id36;Parent=rna26;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 RefSeq gene 329415 329798 . + . ID=gene316;Name=SH04_RS01585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01585;old_locus_tag=SH04_01575 NZ_CP010443.1 Protein Homology CDS 329415 329798 . + 0 ID=cds289;Parent=gene316;Dbxref=Genbank:WP_001326558.1;Name=WP_001326558.1;gbkey=CDS;product=stress-induced protein;protein_id=WP_001326558.1;transl_table=11 NZ_CP010443.1 RefSeq gene 329861 330304 . - . ID=gene317;Name=SH04_RS01590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01590;old_locus_tag=SH04_01580 NZ_CP010443.1 Protein Homology CDS 329861 330304 . - 0 ID=cds290;Parent=gene317;Dbxref=Genbank:WP_000237004.1;Name=WP_000237004.1;gbkey=CDS;product=GNAT family acetyltransferase;protein_id=WP_000237004.1;transl_table=11 NZ_CP010443.1 RefSeq gene 330461 331390 . + . ID=gene318;Name=SH04_RS01595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01595;old_locus_tag=SH04_01585 NZ_CP010443.1 Protein Homology CDS 330461 331390 . + 0 ID=cds291;Parent=gene318;Dbxref=Genbank:WP_001122779.1;Name=WP_001122779.1;Note=catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis;gbkey=CDS;product=homoserine O-succinyltransferase;protein_id=WP_001122779.1;transl_table=11 NZ_CP010443.1 RefSeq gene 331659 333260 . + . ID=gene319;Name=SH04_RS01600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01600;old_locus_tag=SH04_01590 NZ_CP010443.1 Protein Homology CDS 331659 333260 . + 0 ID=cds292;Parent=gene319;Dbxref=Genbank:WP_000138905.1;Name=WP_000138905.1;Note=Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle;gbkey=CDS;product=malate synthase A;protein_id=WP_000138905.1;transl_table=11 NZ_CP010443.1 RefSeq gene 333290 334594 . + . ID=gene320;Name=SH04_RS01605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01605;old_locus_tag=SH04_01595 NZ_CP010443.1 Protein Homology CDS 333290 334594 . + 0 ID=cds293;Parent=gene320;Dbxref=Genbank:WP_000857856.1;Name=WP_000857856.1;gbkey=CDS;product=isocitrate lyase;protein_id=WP_000857856.1;transl_table=11 NZ_CP010443.1 RefSeq gene 334777 336513 . + . ID=gene321;Name=aceK;gbkey=Gene;gene=aceK;gene_biotype=protein_coding;locus_tag=SH04_RS01610;old_locus_tag=SH04_01600 NZ_CP010443.1 Protein Homology CDS 334777 336513 . + 0 ID=cds294;Parent=gene321;Dbxref=Genbank:WP_001137220.1;Name=WP_001137220.1;Note=catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity%3B unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol;gbkey=CDS;gene=aceK;product=isocitrate dehydrogenase;protein_id=WP_001137220.1;transl_table=11 NZ_CP010443.1 RefSeq gene 336482 338668 . - . ID=gene322;Name=SH04_RS01615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01615;old_locus_tag=SH04_01605 NZ_CP010443.1 Protein Homology CDS 336482 338668 . - 0 ID=cds295;Parent=gene322;Dbxref=Genbank:WP_000632913.1;Name=WP_000632913.1;gbkey=CDS;product=ankyrin repeat protein A;protein_id=WP_000632913.1;transl_table=11 NZ_CP010443.1 RefSeq gene 338985 339809 . - . ID=gene323;Name=SH04_RS01620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01620;old_locus_tag=SH04_01610 NZ_CP010443.1 Protein Homology CDS 338985 339809 . - 0 ID=cds296;Parent=gene323;Dbxref=Genbank:WP_000226403.1;Name=WP_000226403.1;Note=regulates the glyoxylate bypass operon (aceBAK)%2C which encodes isocitrate lyase%2C malate synthase and isocitrate dehydrogenase kinase/phosphorylase;gbkey=CDS;product=acetate operon repressor;protein_id=WP_000226403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 340009 343692 . + . ID=gene324;Name=metH;gbkey=Gene;gene=metH;gene_biotype=protein_coding;locus_tag=SH04_RS01625;old_locus_tag=SH04_01615 NZ_CP010443.1 Protein Homology CDS 340009 343692 . + 0 ID=cds297;Parent=gene324;Dbxref=Genbank:WP_000096011.1;Name=WP_000096011.1;Note=one of two methionine synthases in Escherichia coli%3B MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine%3B requires zinc for activity;gbkey=CDS;gene=metH;product=methionine synthase;protein_id=WP_000096011.1;transl_table=11 NZ_CP010443.1 RefSeq gene 343912 345543 . + . ID=gene325;Name=SH04_RS01630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01630;old_locus_tag=SH04_01620 NZ_CP010443.1 Protein Homology CDS 343912 345543 . + 0 ID=cds298;Parent=gene325;Dbxref=Genbank:WP_000956830.1;Name=WP_000956830.1;gbkey=CDS;product=transporter;protein_id=WP_000956830.1;transl_table=11 NZ_CP010443.1 RefSeq gene 345634 346323 . - . ID=gene326;Name=SH04_RS01635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01635;old_locus_tag=SH04_01625 NZ_CP010443.1 Protein Homology CDS 345634 346323 . - 0 ID=cds299;Parent=gene326;Dbxref=Genbank:WP_000421763.1;Name=WP_000421763.1;Note=peptidase E%3B catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue%3B belongs to peptidase S51 family;gbkey=CDS;product=peptidase E;protein_id=WP_000421763.1;transl_table=11 NZ_CP010443.1 RefSeq gene 346535 347407 . + . ID=gene327;Name=SH04_RS01640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01640;old_locus_tag=SH04_01630 NZ_CP010443.1 Protein Homology CDS 346535 347407 . + 0 ID=cds300;Parent=gene327;Dbxref=Genbank:WP_000936377.1;Name=WP_000936377.1;Note=catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA;gbkey=CDS;product=ribosomal large subunit pseudouridine synthase F;protein_id=WP_000936377.1;transl_table=11 NZ_CP010443.1 RefSeq gene 347540 347812 . - . ID=gene328;Name=SH04_RS01645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01645;old_locus_tag=SH04_01635 NZ_CP010443.1 Protein Homology CDS 347540 347812 . - 0 ID=cds301;Parent=gene328;Dbxref=Genbank:WP_001207634.1;Name=WP_001207634.1;gbkey=CDS;product=DUF3811 domain-containing protein;protein_id=WP_001207634.1;transl_table=11 NZ_CP010443.1 RefSeq gene 348065 349414 . - . ID=gene329;Name=SH04_RS01650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01650;old_locus_tag=SH04_01640 NZ_CP010443.1 Protein Homology CDS 348065 349414 . - 0 ID=cds302;Parent=gene329;Dbxref=Genbank:WP_001290310.1;Name=WP_001290310.1;Note=catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP%3B functions in amino acid biosynthesis%3B lysine sensitive;gbkey=CDS;product=lysine-sensitive aspartokinase 3;protein_id=WP_001290310.1;transl_table=11 NZ_CP010443.1 RefSeq gene 349939 351588 . + . ID=gene330;Name=pgi;gbkey=Gene;gene=pgi;gene_biotype=protein_coding;locus_tag=SH04_RS01655;old_locus_tag=SH04_01645 NZ_CP010443.1 Protein Homology CDS 349939 351588 . + 0 ID=cds303;Parent=gene330;Dbxref=Genbank:WP_000789986.1;Name=WP_000789986.1;Note=functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis%3B catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate%3B member of PGI family;gbkey=CDS;gene=pgi;product=glucose-6-phosphate isomerase;protein_id=WP_000789986.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 351695 352464 . + . ID=id37;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 351711 352214 . - . ID=gene331;Name=SH04_RS01660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01660;old_locus_tag=SH04_01650 NZ_CP010443.1 Protein Homology CDS 351711 352214 . - 0 ID=cds304;Parent=gene331;Dbxref=Genbank:WP_001119362.1;Name=WP_001119362.1;gbkey=CDS;product=transposase;protein_id=WP_001119362.1;transl_table=11 NZ_CP010443.1 RefSeq gene 352133 352408 . - . ID=gene332;Name=SH04_RS01665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01665;old_locus_tag=SH04_01655 NZ_CP010443.1 Protein Homology CDS 352133 352408 . - 0 ID=cds305;Parent=gene332;Dbxref=Genbank:WP_000179213.1;Name=WP_000179213.1;gbkey=CDS;product=repressor TnpA;protein_id=WP_000179213.1;transl_table=11 NZ_CP010443.1 RefSeq gene 352864 353106 . + . ID=gene333;Name=SH04_RS01670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01670;old_locus_tag=SH04_01660 NZ_CP010443.1 Protein Homology CDS 352864 353106 . + 0 ID=cds306;Parent=gene333;Dbxref=Genbank:WP_000757333.1;Name=WP_000757333.1;gbkey=CDS;product=polysaccharide production threonine-rich protein;protein_id=WP_000757333.1;transl_table=11 NZ_CP010443.1 RefSeq gene 353220 353858 . + . ID=gene334;Name=SH04_RS01675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01675;old_locus_tag=SH04_01665 NZ_CP010443.1 Protein Homology CDS 353220 353858 . + 0 ID=cds307;Parent=gene334;Dbxref=Genbank:WP_001295278.1;Name=WP_001295278.1;gbkey=CDS;product=polysaccharide production lipoprotein;protein_id=WP_001295278.1;transl_table=11 NZ_CP010443.1 RefSeq gene 353855 354592 . + . ID=gene335;Name=SH04_RS01680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01680;old_locus_tag=SH04_01670 NZ_CP010443.1 Protein Homology CDS 353855 354592 . + 0 ID=cds308;Parent=gene335;Dbxref=Genbank:WP_000595558.1;Name=WP_000595558.1;gbkey=CDS;product=polysaccharide export OMA protein;protein_id=WP_000595558.1;transl_table=11 NZ_CP010443.1 RefSeq gene 354592 356688 . + . ID=gene336;Name=SH04_RS01685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01685;old_locus_tag=SH04_01675 NZ_CP010443.1 Protein Homology CDS 354592 356688 . + 0 ID=cds309;Parent=gene336;Dbxref=Genbank:WP_000745776.1;Name=WP_000745776.1;gbkey=CDS;product=DUF940 domain-containing protein;protein_id=WP_000745776.1;transl_table=11 NZ_CP010443.1 RefSeq gene 356735 357013 . - . ID=gene337;Name=SH04_RS01690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01690;old_locus_tag=SH04_01680 NZ_CP010443.1 Protein Homology CDS 356735 357013 . - 0 ID=cds310;Parent=gene337;Dbxref=Genbank:WP_001295279.1;Name=WP_001295279.1;gbkey=CDS;product=periplasmic protein;protein_id=WP_001295279.1;transl_table=11 NZ_CP010443.1 RefSeq gene 357014 357157 . + . ID=gene338;Name=SH04_RS01695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01695;old_locus_tag=SH04_01685 NZ_CP010443.1 Protein Homology CDS 357014 357157 . + 0 ID=cds311;Parent=gene338;Dbxref=Genbank:WP_000487766.1;Name=WP_000487766.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000487766.1;transl_table=11 NZ_CP010443.1 RefSeq gene 357283 357693 . + . ID=gene339;Name=SH04_RS01700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01700;old_locus_tag=SH04_01695 NZ_CP010443.1 Protein Homology CDS 357283 357693 . + 0 ID=cds312;Parent=gene339;Dbxref=Genbank:WP_000202902.1;Name=WP_000202902.1;gbkey=CDS;product=protein PsiE;protein_id=WP_000202902.1;transl_table=11 NZ_CP010443.1 RefSeq gene 357737 359212 . - . ID=gene340;Name=xylE;gbkey=Gene;gene=xylE;gene_biotype=protein_coding;locus_tag=SH04_RS01705;old_locus_tag=SH04_01700 NZ_CP010443.1 Protein Homology CDS 357737 359212 . - 0 ID=cds313;Parent=gene340;Dbxref=Genbank:WP_001097274.1;Name=WP_001097274.1;Note=xylose/proton symporter%3B member of the major facilitator superfamily (MFS) of transporter;gbkey=CDS;gene=xylE;product=D-xylose-proton symporter;protein_id=WP_001097274.1;transl_table=11 NZ_CP010443.1 RefSeq gene 359584 360474 . - . ID=gene341;Name=malG;gbkey=Gene;gene=malG;gene_biotype=protein_coding;locus_tag=SH04_RS01710;old_locus_tag=SH04_01705 NZ_CP010443.1 Protein Homology CDS 359584 360474 . - 0 ID=cds314;Parent=gene341;Dbxref=Genbank:WP_001252058.1;Name=WP_001252058.1;Note=with MalKFE is involved in the transport of maltose into the cell;gbkey=CDS;gene=malG;product=maltose ABC transporter permease;protein_id=WP_001252058.1;transl_table=11 NZ_CP010443.1 RefSeq gene 360489 362033 . - . ID=gene342;Name=malF;gbkey=Gene;gene=malF;gene_biotype=protein_coding;locus_tag=SH04_RS01715;old_locus_tag=SH04_01710 NZ_CP010443.1 Protein Homology CDS 360489 362033 . - 0 ID=cds315;Parent=gene342;Dbxref=Genbank:WP_001297290.1;Name=WP_001297290.1;Note=with MalKGE is involved in maltose transport into the cell;gbkey=CDS;gene=malF;product=maltose ABC transporter permease;protein_id=WP_001297290.1;transl_table=11 NZ_CP010443.1 RefSeq gene 362187 363377 . - . ID=gene343;Name=malE;gbkey=Gene;gene=malE;gene_biotype=protein_coding;locus_tag=SH04_RS01720;old_locus_tag=SH04_01715 NZ_CP010443.1 Protein Homology CDS 362187 363377 . - 0 ID=cds316;Parent=gene343;Dbxref=Genbank:WP_000695387.1;Name=WP_000695387.1;Note=functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis;gbkey=CDS;gene=malE;product=maltose-binding periplasmic protein;protein_id=WP_000695387.1;transl_table=11 NZ_CP010443.1 RefSeq gene 363470 363565 . - . ID=gene344;Name=SH04_RS01725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01725;old_locus_tag=SH04_01720 NZ_CP010443.1 Protein Homology CDS 363470 363565 . - 0 ID=cds317;Parent=gene344;Dbxref=Genbank:WP_000922710.1;Name=WP_000922710.1;gbkey=CDS;product=sugar ABC transporter;protein_id=WP_000922710.1;transl_table=11 NZ_CP010443.1 RefSeq gene 363742 364857 . + . ID=gene345;Name=SH04_RS01730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01730;old_locus_tag=SH04_01725 NZ_CP010443.1 Protein Homology CDS 363742 364857 . + 0 ID=cds318;Parent=gene345;Dbxref=Genbank:WP_000179165.1;Name=WP_000179165.1;Note=with malEFG is involved in import of maltose/maltodextrin;gbkey=CDS;product=maltose/maltodextrin import ATP-binding protein MalK;protein_id=WP_000179165.1;transl_table=11 NZ_CP010443.1 RefSeq gene 364929 366269 . + . ID=gene346;Name=lamB;gbkey=Gene;gene=lamB;gene_biotype=protein_coding;locus_tag=SH04_RS01735;old_locus_tag=SH04_01730 NZ_CP010443.1 Protein Homology CDS 364929 366269 . + 0 ID=cds319;Parent=gene346;Dbxref=Genbank:WP_000973663.1;Name=WP_000973663.1;Note=porin involved in the transport of maltose and maltodextrins;gbkey=CDS;gene=lamB;product=maltoporin;protein_id=WP_000973663.1;transl_table=11 NZ_CP010443.1 RefSeq gene 366512 367432 . + . ID=gene347;Name=SH04_RS01740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01740;old_locus_tag=SH04_01735 NZ_CP010443.1 Protein Homology CDS 366512 367432 . + 0 ID=cds320;Parent=gene347;Dbxref=Genbank:WP_001326641.1;Name=WP_001326641.1;gbkey=CDS;product=maltose operon periplasmic protein;protein_id=WP_001326641.1;transl_table=11 NZ_CP010443.1 RefSeq gene 367661 367855 . + . ID=gene348;Name=SH04_RS01745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01745;old_locus_tag=SH04_01740 NZ_CP010443.1 Protein Homology CDS 367661 367855 . + 0 ID=cds321;Parent=gene348;Dbxref=Genbank:WP_000623313.1;Name=WP_000623313.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000623313.1;transl_table=11 NZ_CP010443.1 RefSeq gene 367913 369241 . + . ID=gene349;Name=SH04_RS01750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01750;old_locus_tag=SH04_01745 NZ_CP010443.1 Protein Homology CDS 367913 369241 . + 0 ID=cds322;Parent=gene349;Dbxref=Genbank:WP_001311302.1;Name=WP_001311302.1;Note=in E. coli%2C some yjbl mutations have been reported as suppressors of dnaG mutations;gbkey=CDS;product=hypothetical protein;protein_id=WP_001311302.1;transl_table=11 NZ_CP010443.1 RefSeq gene 369464 369961 . + . ID=gene350;Name=ubiC;gbkey=Gene;gene=ubiC;gene_biotype=protein_coding;locus_tag=SH04_RS01755;old_locus_tag=SH04_01750 NZ_CP010443.1 Protein Homology CDS 369464 369961 . + 0 ID=cds323;Parent=gene350;Dbxref=Genbank:WP_001326644.1;Name=WP_001326644.1;Note=catalyzes the formation of 4-hydroxybenzoate from chorismate;gbkey=CDS;gene=ubiC;product=Chorismate pyruvate-lyase;protein_id=WP_001326644.1;transl_table=11 NZ_CP010443.1 RefSeq gene 369974 370846 . + . ID=gene351;Name=ubiA;gbkey=Gene;gene=ubiA;gene_biotype=protein_coding;locus_tag=SH04_RS01760;old_locus_tag=SH04_01755 NZ_CP010443.1 Protein Homology CDS 369974 370846 . + 0 ID=cds324;Parent=gene351;Dbxref=Genbank:WP_000455227.1;Name=WP_000455227.1;Note=catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate%2C as part of the ubiquinone biosynthesis pathway;gbkey=CDS;gene=ubiA;product=4-hydroxybenzoate octaprenyltransferase;protein_id=WP_000455227.1;transl_table=11 NZ_CP010443.1 RefSeq gene 371001 373424 . - . ID=gene352;Name=SH04_RS01765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01765;old_locus_tag=SH04_01760 NZ_CP010443.1 Protein Homology CDS 371001 373424 . - 0 ID=cds325;Parent=gene352;Dbxref=Genbank:WP_000017354.1;Name=WP_000017354.1;Note=PlsB%3B catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA;gbkey=CDS;product=glycerol-3-phosphate acyltransferase;protein_id=WP_000017354.1;transl_table=11 NZ_CP010443.1 RefSeq gene 373595 373963 . + . ID=gene353;Name=SH04_RS01770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01770;old_locus_tag=SH04_01765 NZ_CP010443.1 Protein Homology CDS 373595 373963 . + 0 ID=cds326;Parent=gene353;Dbxref=Genbank:WP_000002907.1;Name=WP_000002907.1;Note=catalyzes the phosphorylation of diacylglycerol to form diacylglycerol phosphate;gbkey=CDS;product=diacylglycerol kinase;protein_id=WP_000002907.1;transl_table=11 NZ_CP010443.1 RefSeq gene 374073 374681 . + . ID=gene354;Name=SH04_RS01775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01775;old_locus_tag=SH04_01770 NZ_CP010443.1 Protein Homology CDS 374073 374681 . + 0 ID=cds327;Parent=gene354;Dbxref=Genbank:WP_000646078.1;Name=WP_000646078.1;Note=Represses a number of genes involved in the response to DNA damage;gbkey=CDS;product=LexA repressor;protein_id=WP_000646078.1;transl_table=11 NZ_CP010443.1 RefSeq gene 374754 376079 . + . ID=gene355;Name=SH04_RS01780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01780;old_locus_tag=SH04_01775 NZ_CP010443.1 Protein Homology CDS 374754 376079 . + 0 ID=cds328;Parent=gene355;Dbxref=Genbank:WP_001326646.1;Name=WP_001326646.1;gbkey=CDS;product=MATE family efflux transporter;protein_id=WP_001326646.1;transl_table=11 NZ_CP010443.1 RefSeq gene 376195 376404 . + . ID=gene356;Name=SH04_RS01785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01785;old_locus_tag=SH04_01780 NZ_CP010443.1 Protein Homology CDS 376195 376404 . + 0 ID=cds329;Parent=gene356;Dbxref=Genbank:WP_001030593.1;Name=WP_001030593.1;gbkey=CDS;product=stress-induced protein%2C UPF0337 family;protein_id=WP_001030593.1;transl_table=11 NZ_CP010443.1 RefSeq gene 376446 376961 . - . ID=gene357;Name=SH04_RS01790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01790;old_locus_tag=SH04_01785 NZ_CP010443.1 Protein Homology CDS 376446 376961 . - 0 ID=cds330;Parent=gene357;Dbxref=Genbank:WP_001295691.1;Name=WP_001295691.1;Note=Acts as a negative controlling element%2C employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB;gbkey=CDS;product=zinc uptake regulation protein;protein_id=WP_001295691.1;transl_table=11 NZ_CP010443.1 RefSeq gene 377279 377533 . + . ID=gene358;Name=SH04_RS01795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01795;old_locus_tag=SH04_01790 NZ_CP010443.1 Protein Homology CDS 377279 377533 . + 0 ID=cds331;Parent=gene358;Dbxref=Genbank:WP_000912571.1;Name=WP_000912571.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000912571.1;transl_table=11 NZ_CP010443.1 RefSeq gene 377557 378264 . + . ID=gene359;Name=SH04_RS01800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01800;old_locus_tag=SH04_01795 NZ_CP010443.1 Protein Homology CDS 377557 378264 . + 0 ID=cds332;Parent=gene359;Dbxref=Genbank:WP_001311303.1;Name=WP_001311303.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001311303.1;transl_table=11 NZ_CP010443.1 RefSeq gene 378672 379664 . + . ID=gene360;Name=SH04_RS01805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01805;old_locus_tag=SH04_01800 NZ_CP010443.1 Protein Homology CDS 378672 379664 . + 0 ID=cds333;Parent=gene360;Dbxref=Genbank:WP_001307511.1;Name=WP_001307511.1;gbkey=CDS;product=tRNA-dihydrouridine synthase A;protein_id=WP_001307511.1;transl_table=11 NZ_CP010443.1 RefSeq gene 379798 380040 . + . ID=gene361;Name=pspG;gbkey=Gene;gene=pspG;gene_biotype=protein_coding;locus_tag=SH04_RS01810;old_locus_tag=SH04_01805 NZ_CP010443.1 Protein Homology CDS 379798 380040 . + 0 ID=cds334;Parent=gene361;Dbxref=Genbank:WP_000891404.1;Name=WP_000891404.1;Note=coordinately regulated along with pspA%3B PspF-dependent induction in response to secretin overexpression in Yersinia;gbkey=CDS;gene=pspG;product=phage shock protein G;protein_id=WP_000891404.1;transl_table=11 NZ_CP010443.1 RefSeq gene 380206 381189 . - . ID=gene362;Name=SH04_RS01815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01815;old_locus_tag=SH04_01810 NZ_CP010443.1 Protein Homology CDS 380206 381189 . - 0 ID=cds335;Parent=gene362;Dbxref=Genbank:WP_000235508.1;Name=WP_000235508.1;gbkey=CDS;product=quinone oxidoreductase 1;protein_id=WP_000235508.1;transl_table=11 NZ_CP010443.1 RefSeq gene 381272 382687 . + . ID=gene363;Name=SH04_RS01820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01820;old_locus_tag=SH04_01815 NZ_CP010443.1 Protein Homology CDS 381272 382687 . + 0 ID=cds336;Parent=gene363;Dbxref=Genbank:WP_000918363.1;Name=WP_000918363.1;Note=unwinds double stranded DNA;gbkey=CDS;product=replicative DNA helicase;protein_id=WP_000918363.1;transl_table=11 NZ_CP010443.1 RefSeq gene 382740 383819 . + . ID=gene364;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;locus_tag=SH04_RS01825;old_locus_tag=SH04_01820 NZ_CP010443.1 Protein Homology CDS 382740 383819 . + 0 ID=cds337;Parent=gene364;Dbxref=Genbank:WP_001147328.1;Name=WP_001147328.1;Note=converts L-alanine to D-alanine which is used in cell wall biosynthesis%3B binds one pyridoxal phosphate per monomer%3B forms a homodimer;gbkey=CDS;gene=alr;product=alanine racemase biosynthetic;protein_id=WP_001147328.1;transl_table=11 NZ_CP010443.1 RefSeq gene 384072 385265 . + . ID=gene365;Name=SH04_RS01830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01830;old_locus_tag=SH04_01825 NZ_CP010443.1 Protein Homology CDS 384072 385265 . + 0 ID=cds338;Parent=gene365;Dbxref=Genbank:WP_000486985.1;Name=WP_000486985.1;Note=catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate;gbkey=CDS;product=aromatic-amino-acid aminotransferase;protein_id=WP_000486985.1;transl_table=11 NZ_CP010443.1 RefSeq gene 385487 385970 . - . ID=gene366;Name=SH04_RS01835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS01835;pseudo=true NZ_CP010443.1 Protein Homology CDS 385487 385970 . - 0 ID=cds339;Parent=gene366;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 386372 387085 . + . ID=gene367;Name=aphA;gbkey=Gene;gene=aphA;gene_biotype=protein_coding;locus_tag=SH04_RS01840;old_locus_tag=SH04_01835 NZ_CP010443.1 Protein Homology CDS 386372 387085 . + 0 ID=cds340;Parent=gene367;Dbxref=Genbank:WP_001226928.1;Name=WP_001226928.1;Note=Class B%3B non-specific%3B catalyzes the dephosphorylation of organic phosphomonoesters%3B also has phosphotransferase activity;gbkey=CDS;gene=aphA;product=class B acid phosphatase;protein_id=WP_001226928.1;transl_table=11 NZ_CP010443.1 RefSeq gene 387196 387612 . + . ID=gene368;Name=SH04_RS01845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01845;old_locus_tag=SH04_01840 NZ_CP010443.1 Protein Homology CDS 387196 387612 . + 0 ID=cds341;Parent=gene368;Dbxref=Genbank:WP_000270375.1;Name=WP_000270375.1;gbkey=CDS;product=thiamin phosphate synthase;protein_id=WP_000270375.1;transl_table=11 NZ_CP010443.1 RefSeq gene 387616 387972 . + . ID=gene369;Name=SH04_RS01850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01850;old_locus_tag=SH04_01845 NZ_CP010443.1 Protein Homology CDS 387616 387972 . + 0 ID=cds342;Parent=gene369;Dbxref=Genbank:WP_000155657.1;Name=WP_000155657.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000155657.1;transl_table=11 NZ_CP010443.1 RefSeq gene 388007 390829 . - . ID=gene370;Name=SH04_RS01855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01855;old_locus_tag=SH04_01850 NZ_CP010443.1 Protein Homology CDS 388007 390829 . - 0 ID=cds343;Parent=gene370;Dbxref=Genbank:WP_000357740.1;Name=WP_000357740.1;gbkey=CDS;product=UvrABC system protein A;protein_id=WP_000357740.1;transl_table=11 NZ_CP010443.1 RefSeq gene 391083 391619 . + . ID=gene371;Name=SH04_RS01860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01860;old_locus_tag=SH04_01855 NZ_CP010443.1 Protein Homology CDS 391083 391619 . + 0 ID=cds344;Parent=gene371;Dbxref=Genbank:WP_000168305.1;Name=WP_000168305.1;Note=binds to single stranded DNA and PriA helcase facilitate replication restart;gbkey=CDS;product=single-stranded DNA-binding protein;protein_id=WP_000168305.1;transl_table=11 NZ_CP010443.1 RefSeq gene 391718 391999 . - . ID=gene372;Name=SH04_RS01865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01865;old_locus_tag=SH04_01860 NZ_CP010443.1 Protein Homology CDS 391718 391999 . - 0 ID=cds345;Parent=gene372;Dbxref=Genbank:WP_001295689.1;Name=WP_001295689.1;gbkey=CDS;product=membrane protein;protein_id=WP_001295689.1;transl_table=11 NZ_CP010443.1 RefSeq gene 392429 394015 . + . ID=gene373;Name=SH04_RS01870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01870;old_locus_tag=SH04_01865 NZ_CP010443.1 Protein Homology CDS 392429 394015 . + 0 ID=cds346;Parent=gene373;Dbxref=Genbank:WP_000019548.1;Name=WP_000019548.1;gbkey=CDS;product=cyclic-di-GMP phosphodiesterase;protein_id=WP_000019548.1;transl_table=11 NZ_CP010443.1 RefSeq gene 394018 394341 . - . ID=gene374;Name=SH04_RS01875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01875;old_locus_tag=SH04_01870 NZ_CP010443.1 Protein Homology CDS 394018 394341 . - 0 ID=cds347;Parent=gene374;Dbxref=Genbank:WP_000019358.1;Name=WP_000019358.1;Note=regulates genes involved in response to oxidative stress;gbkey=CDS;product=regulatory protein SoxS;protein_id=WP_000019358.1;transl_table=11 NZ_CP010443.1 RefSeq gene 394427 394891 . + . ID=gene375;Name=SH04_RS01880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01880;old_locus_tag=SH04_01875 NZ_CP010443.1 Protein Homology CDS 394427 394891 . + 0 ID=cds348;Parent=gene375;Dbxref=Genbank:WP_000412428.1;Name=WP_000412428.1;gbkey=CDS;product=redox-sensitive transcriptional activator SoxR;protein_id=WP_000412428.1;transl_table=11 NZ_CP010443.1 RefSeq gene 395437 396786 . + . ID=gene376;Name=SH04_RS01885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01885;old_locus_tag=SH04_01880 NZ_CP010443.1 Protein Homology CDS 395437 396786 . + 0 ID=cds349;Parent=gene376;Dbxref=Genbank:WP_000106882.1;Name=WP_000106882.1;gbkey=CDS;product=guanine/hypoxanthine permease GhxP;protein_id=WP_000106882.1;transl_table=11 NZ_CP010443.1 RefSeq gene 396938 398587 . + . ID=gene377;Name=SH04_RS01890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01890;old_locus_tag=SH04_01885 NZ_CP010443.1 Protein Homology CDS 396938 398587 . + 0 ID=cds350;Parent=gene377;Dbxref=Genbank:WP_000402210.1;Name=WP_000402210.1;gbkey=CDS;product=cation/proton antiporter;protein_id=WP_000402210.1;transl_table=11 NZ_CP010443.1 RefSeq gene 398741 400033 . - . ID=gene378;Name=SH04_RS01895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01895;old_locus_tag=SH04_01890 NZ_CP010443.1 Protein Homology CDS 398741 400033 . - 0 ID=cds351;Parent=gene378;Dbxref=Genbank:WP_001270094.1;Name=WP_001270094.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001270094.1;transl_table=11 NZ_CP010443.1 RefSeq gene 400211 401860 . - . ID=gene379;Name=actP;gbkey=Gene;gene=actP;gene_biotype=protein_coding;locus_tag=SH04_RS01900;old_locus_tag=SH04_01895 NZ_CP010443.1 Protein Homology CDS 400211 401860 . - 0 ID=cds352;Parent=gene379;Dbxref=Genbank:WP_000832573.1;Name=WP_000832573.1;Note=member of the sodium:solute symporter family%3B cotranscribed with the acs gene which encodes acetyl coenzyme A synthase%3B mutations affect acetate uptake;gbkey=CDS;gene=actP;product=cation/acetate symporter ActP;protein_id=WP_000832573.1;transl_table=11 NZ_CP010443.1 RefSeq gene 401857 402171 . - . ID=gene380;Name=SH04_RS01905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01905;old_locus_tag=SH04_01900 NZ_CP010443.1 Protein Homology CDS 401857 402171 . - 0 ID=cds353;Parent=gene380;Dbxref=Genbank:WP_001014565.1;Name=WP_001014565.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001014565.1;transl_table=11 NZ_CP010443.1 RefSeq gene 402371 404329 . - . ID=gene381;Name=SH04_RS01910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01910;old_locus_tag=SH04_01905 NZ_CP010443.1 Protein Homology CDS 402371 404329 . - 0 ID=cds354;Parent=gene381;Dbxref=Genbank:WP_000078239.1;Name=WP_000078239.1;Note=Acs%3B catalyzes the conversion of acetate and CoA to acetyl-CoA;gbkey=CDS;product=acetyl-CoA synthetase;protein_id=WP_000078239.1;transl_table=11 NZ_CP010443.1 RefSeq gene 404722 406158 . + . ID=gene382;Name=nrfA;gbkey=Gene;gene=nrfA;gene_biotype=protein_coding;locus_tag=SH04_RS01915;old_locus_tag=SH04_01910 NZ_CP010443.1 Protein Homology CDS 404722 406158 . + 0 ID=cds355;Parent=gene382;Dbxref=Genbank:WP_000196875.1;Name=WP_000196875.1;Note=catalyzes the formate-dependent reduction of nitrite to ammonia%3B cytochrome C552;gbkey=CDS;gene=nrfA;product=cytochrome c-552;protein_id=WP_000196875.1;transl_table=11 NZ_CP010443.1 RefSeq gene 406203 406769 . + . ID=gene383;Name=SH04_RS01920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01920;old_locus_tag=SH04_01915 NZ_CP010443.1 Protein Homology CDS 406203 406769 . + 0 ID=cds356;Parent=gene383;Dbxref=Genbank:WP_001295391.1;Name=WP_001295391.1;Note=part of nitrite reductase complex%3B NrfB is active at high nitrate conditions%3B NrfA%2C B%2C C%2C and D are essential for the formate-dependent nitrite reduction to ammonia;gbkey=CDS;product=cytochrome c-type protein NrfB;protein_id=WP_001295391.1;transl_table=11 NZ_CP010443.1 RefSeq gene 406766 407437 . + . ID=gene384;Name=SH04_RS01925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01925;old_locus_tag=SH04_01920 NZ_CP010443.1 Protein Homology CDS 406766 407437 . + 0 ID=cds357;Parent=gene384;Dbxref=Genbank:WP_000220281.1;Name=WP_000220281.1;Note=4Fe4S subunit%3B may be involved in the transfer of electrons from quinones to the c-type cytochromes;gbkey=CDS;product=protein NrfC;protein_id=WP_000220281.1;transl_table=11 NZ_CP010443.1 RefSeq gene 407434 408390 . + . ID=gene385;Name=SH04_RS01930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01930;old_locus_tag=SH04_01925 NZ_CP010443.1 Protein Homology CDS 407434 408390 . + 0 ID=cds358;Parent=gene385;Dbxref=Genbank:WP_000195171.1;Name=WP_000195171.1;Note=membrane protein%2C may be involved in the transfer of electrons from quinones to c-type cytochromes;gbkey=CDS;product=protein NrfD;protein_id=WP_000195171.1;transl_table=11 NZ_CP010443.1 RefSeq gene 408521 410128 . + . ID=gene386;Name=SH04_RS01935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01935;old_locus_tag=SH04_01930 NZ_CP010443.1 Protein Homology CDS 408521 410128 . + 0 ID=cds359;Parent=gene386;Dbxref=Genbank:WP_001326651.1;Name=WP_001326651.1;Note=with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552;gbkey=CDS;product=heme lyase subunit NrfE;protein_id=WP_001326651.1;transl_table=11 NZ_CP010443.1 RefSeq gene 410121 410504 . + . ID=gene387;Name=SH04_RS01940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01940;old_locus_tag=SH04_01935 NZ_CP010443.1 Protein Homology CDS 410121 410504 . + 0 ID=cds360;Parent=gene387;Dbxref=Genbank:WP_001032531.1;Name=WP_001032531.1;gbkey=CDS;product=formate-dependent nitrite reductase complex subunit NrfF;protein_id=WP_001032531.1;transl_table=11 NZ_CP010443.1 RefSeq gene 410501 411097 . + . ID=gene388;Name=SH04_RS01945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01945;old_locus_tag=SH04_01940 NZ_CP010443.1 Protein Homology CDS 410501 411097 . + 0 ID=cds361;Parent=gene388;Dbxref=Genbank:WP_000812896.1;Name=WP_000812896.1;gbkey=CDS;product=formate-dependent nitrite reductase complex subunit NrfG;protein_id=WP_000812896.1;transl_table=11 NZ_CP010443.1 RefSeq gene 411439 412752 . + . ID=gene389;Name=SH04_RS01950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01950;old_locus_tag=SH04_01945 NZ_CP010443.1 Protein Homology CDS 411439 412752 . + 0 ID=cds362;Parent=gene389;Dbxref=Genbank:WP_000789592.1;Name=WP_000789592.1;gbkey=CDS;product=proton glutamate symport protein;protein_id=WP_000789592.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 412793 413280 . + . ID=id38;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 413283 413972 . - . ID=gene390;Name=SH04_RS01955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01955;old_locus_tag=SH04_01950 NZ_CP010443.1 Protein Homology CDS 413283 413972 . - 0 ID=cds363;Parent=gene390;Dbxref=Genbank:WP_038432727.1;Name=WP_038432727.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_038432727.1;transl_table=11 NZ_CP010443.1 RefSeq gene 414066 415745 . - . ID=gene391;Name=SH04_RS01960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01960;old_locus_tag=SH04_01955 NZ_CP010443.1 Protein Homology CDS 414066 415745 . - 0 ID=cds364;Parent=gene391;Dbxref=Genbank:WP_000063439.1;Name=WP_000063439.1;gbkey=CDS;product=formate dehydrogenase subunit alpha;protein_id=WP_000063439.1;transl_table=11 NZ_CP010443.1 RefSeq gene 415794 416213 . - . ID=gene392;Name=SH04_RS01965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01965;old_locus_tag=SH04_01960 NZ_CP010443.1 Protein Homology CDS 415794 416213 . - 0 ID=cds365;Parent=gene392;Dbxref=Genbank:WP_000758300.1;Name=WP_000758300.1;gbkey=CDS;product=spermidine/putrescine ABC transporter substrate-binding protein;protein_id=WP_000758300.1;transl_table=11 NZ_CP010443.1 RefSeq gene 416411 417877 . - . ID=gene393;Name=SH04_RS01970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01970;old_locus_tag=SH04_01965 NZ_CP010443.1 Protein Homology CDS 416411 417877 . - 0 ID=cds366;Parent=gene393;Dbxref=Genbank:WP_000610601.1;Name=WP_000610601.1;Note=part of a multidrug efflux system involved in resistance to acriflavin%2C puromycin%2C erytjhromycin and tetraphenylarsonium chloride%3B member of the outer membrane factor (OMF) family;gbkey=CDS;product=multidrug resistance outer membrane protein MdtP;protein_id=WP_000610601.1;transl_table=11 NZ_CP010443.1 RefSeq gene 417874 419925 . - . ID=gene394;Name=SH04_RS01975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01975;old_locus_tag=SH04_01970 NZ_CP010443.1 Protein Homology CDS 417874 419925 . - 0 ID=cds367;Parent=gene394;Dbxref=Genbank:WP_001275207.1;Name=WP_001275207.1;Note=possibly part of a tripartite efflux system composed of MdtN%2C MdtO and MdtP which could be involved in resistance to puromycin%2C acriflavine and tetraphenylarsonium chloride;gbkey=CDS;product=multidrug resistance protein MdtO;protein_id=WP_001275207.1;transl_table=11 NZ_CP010443.1 RefSeq gene 419925 420956 . - . ID=gene395;Name=SH04_RS01980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01980;old_locus_tag=SH04_01975 NZ_CP010443.1 Protein Homology CDS 419925 420956 . - 0 ID=cds368;Parent=gene395;Dbxref=Genbank:WP_000446378.1;Name=WP_000446378.1;Note=with MdtO and MdtP is involved in resistance to puromycin%2C acriflavine and tetraphenylarsonium chloride;gbkey=CDS;product=multidrug resistance protein MdtN;protein_id=WP_000446378.1;transl_table=11 NZ_CP010443.1 RefSeq gene 420975 421250 . - . ID=gene396;Name=SH04_RS01985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01985;old_locus_tag=SH04_01980 NZ_CP010443.1 Protein Homology CDS 420975 421250 . - 0 ID=cds369;Parent=gene396;Dbxref=Genbank:WP_001295389.1;Name=WP_001295389.1;gbkey=CDS;product=transporter;protein_id=WP_001295389.1;transl_table=11 NZ_CP010443.1 RefSeq gene 421459 423444 . - . ID=gene397;Name=SH04_RS01990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01990;old_locus_tag=SH04_01985 NZ_CP010443.1 Protein Homology CDS 421459 423444 . - 0 ID=cds370;Parent=gene397;Dbxref=Genbank:WP_001066019.1;Name=WP_001066019.1;gbkey=CDS;product=MBL fold hydrolase;protein_id=WP_001066019.1;transl_table=11 NZ_CP010443.1 RefSeq gene 423717 424646 . - . ID=gene398;Name=SH04_RS01995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS01995;old_locus_tag=SH04_01990 NZ_CP010443.1 Protein Homology CDS 423717 424646 . - 0 ID=cds371;Parent=gene398;Dbxref=Genbank:WP_001171687.1;Name=WP_001171687.1;gbkey=CDS;product=D-allose kinase;protein_id=WP_001171687.1;transl_table=11 NZ_CP010443.1 RefSeq gene 424630 425325 . - . ID=gene399;Name=SH04_RS02000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02000;old_locus_tag=SH04_01995 NZ_CP010443.1 Protein Homology CDS 424630 425325 . - 0 ID=cds372;Parent=gene399;Dbxref=Genbank:WP_001311314.1;Name=WP_001311314.1;gbkey=CDS;product=D-allulose-6-phosphate 3-epimerase;protein_id=WP_001311314.1;transl_table=11 NZ_CP010443.1 RefSeq gene 425336 426316 . - . ID=gene400;Name=SH04_RS02005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02005;old_locus_tag=SH04_02000 NZ_CP010443.1 Protein Homology CDS 425336 426316 . - 0 ID=cds373;Parent=gene400;Dbxref=Genbank:WP_000507106.1;Name=WP_000507106.1;gbkey=CDS;product=D-allose ABC transporter permease;protein_id=WP_000507106.1;transl_table=11 NZ_CP010443.1 RefSeq gene 426295 427827 . - . ID=gene401;Name=SH04_RS02010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02010;old_locus_tag=SH04_02005 NZ_CP010443.1 Protein Homology CDS 426295 427827 . - 0 ID=cds374;Parent=gene401;Dbxref=Genbank:WP_000235257.1;Name=WP_000235257.1;Note=with AlsBC acts to import allose into the cell%3B AlsA contain 2 ATP-binding domains;gbkey=CDS;product=D-allose import ATP-binding protein AlsA;protein_id=WP_000235257.1;transl_table=11 NZ_CP010443.1 RefSeq gene 427954 428889 . - . ID=gene402;Name=SH04_RS02015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02015;old_locus_tag=SH04_02010 NZ_CP010443.1 Protein Homology CDS 427954 428889 . - 0 ID=cds375;Parent=gene402;Dbxref=Genbank:WP_001046187.1;Name=WP_001046187.1;gbkey=CDS;product=D-allose-binding periplasmic protein;protein_id=WP_001046187.1;transl_table=11 NZ_CP010443.1 RefSeq gene 428948 429838 . - . ID=gene403;Name=SH04_RS02020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02020;old_locus_tag=SH04_02015 NZ_CP010443.1 Protein Homology CDS 428948 429838 . - 0 ID=cds376;Parent=gene403;Dbxref=Genbank:WP_000083216.1;Name=WP_000083216.1;Note=involved in rpiB and als operon repression;gbkey=CDS;product=RpiR family transcriptional regulator;protein_id=WP_000083216.1;transl_table=11 NZ_CP010443.1 RefSeq gene 430197 430646 . + . ID=gene404;Name=SH04_RS02025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02025;old_locus_tag=SH04_02020 NZ_CP010443.1 Protein Homology CDS 430197 430646 . + 0 ID=cds377;Parent=gene404;Dbxref=Genbank:WP_000716794.1;Name=WP_000716794.1;gbkey=CDS;product=ribose-5-phosphate isomerase B;protein_id=WP_000716794.1;transl_table=11 NZ_CP010443.1 RefSeq gene 430715 431044 . + . ID=gene405;Name=SH04_RS02030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02030;old_locus_tag=SH04_02025 NZ_CP010443.1 Protein Homology CDS 430715 431044 . + 0 ID=cds378;Parent=gene405;Dbxref=Genbank:WP_000819746.1;Name=WP_000819746.1;gbkey=CDS;product=periplasmic protein;protein_id=WP_000819746.1;transl_table=11 NZ_CP010443.1 RefSeq gene 431191 431949 . - . ID=gene406;Name=phnP;gbkey=Gene;gene=phnP;gene_biotype=protein_coding;locus_tag=SH04_RS02035;old_locus_tag=SH04_02030 NZ_CP010443.1 Protein Homology CDS 431191 431949 . - 0 ID=cds379;Parent=gene406;Dbxref=Genbank:WP_000059908.1;Name=WP_000059908.1;Note=required for the use of phosphonates and phosphite as phosphorus sources;gbkey=CDS;gene=phnP;product=phosphoribosyl 1%2C2-cyclic phosphodiesterase;protein_id=WP_000059908.1;transl_table=11 NZ_CP010443.1 RefSeq gene 431951 432385 . - . ID=gene407;Name=SH04_RS02040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02040;old_locus_tag=SH04_02035 NZ_CP010443.1 Protein Homology CDS 431951 432385 . - 0 ID=cds380;Parent=gene407;Dbxref=Genbank:WP_001110490.1;Name=WP_001110490.1;Note=PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids%3B part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source%3B Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role;gbkey=CDS;product=protein PhnO;protein_id=WP_001110490.1;transl_table=11 NZ_CP010443.1 RefSeq gene 432372 432929 . - . ID=gene408;Name=SH04_RS02045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02045;old_locus_tag=SH04_02040 NZ_CP010443.1 Protein Homology CDS 432372 432929 . - 0 ID=cds381;Parent=gene408;Dbxref=Genbank:WP_000971886.1;Name=WP_000971886.1;gbkey=CDS;product=ribose 1%2C5-bisphosphate phosphokinase PhnN;protein_id=WP_000971886.1;transl_table=11 NZ_CP010443.1 RefSeq gene 432929 434065 . - . ID=gene409;Name=SH04_RS02050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02050;old_locus_tag=SH04_02045 NZ_CP010443.1 Protein Homology CDS 432929 434065 . - 0 ID=cds382;Parent=gene409;Dbxref=Genbank:WP_000586325.1;Name=WP_000586325.1;gbkey=CDS;product=alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase;protein_id=WP_000586325.1;transl_table=11 NZ_CP010443.1 RefSeq gene 434062 434742 . - . ID=gene410;Name=SH04_RS02055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02055;old_locus_tag=SH04_02050 NZ_CP010443.1 Protein Homology CDS 434062 434742 . - 0 ID=cds383;Parent=gene410;Dbxref=Genbank:WP_000611405.1;Name=WP_000611405.1;gbkey=CDS;product=alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL;protein_id=WP_000611405.1;transl_table=11 NZ_CP010443.1 RefSeq gene 434853 435611 . - . ID=gene411;Name=phnK;gbkey=Gene;gene=phnK;gene_biotype=protein_coding;locus_tag=SH04_RS02060;old_locus_tag=SH04_02055 NZ_CP010443.1 Protein Homology CDS 434853 435611 . - 0 ID=cds384;Parent=gene411;Dbxref=Genbank:WP_001075514.1;Name=WP_001075514.1;gbkey=CDS;gene=phnK;product=phosphonate C-P lyase;protein_id=WP_001075514.1;transl_table=11 NZ_CP010443.1 RefSeq gene 435608 436453 . - . ID=gene412;Name=SH04_RS02065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02065;old_locus_tag=SH04_02060 NZ_CP010443.1 Protein Homology CDS 435608 436453 . - 0 ID=cds385;Parent=gene412;Dbxref=Genbank:WP_000002303.1;Name=WP_000002303.1;gbkey=CDS;product=alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase;protein_id=WP_000002303.1;transl_table=11 NZ_CP010443.1 RefSeq gene 436446 437510 . - . ID=gene413;Name=SH04_RS02070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02070;old_locus_tag=SH04_02065 NZ_CP010443.1 Protein Homology CDS 436446 437510 . - 0 ID=cds386;Parent=gene413;Dbxref=Genbank:WP_001295388.1;Name=WP_001295388.1;Note=required for the use of phosphonate and phosphite;gbkey=CDS;product=alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI;protein_id=WP_001295388.1;transl_table=11 NZ_CP010443.1 RefSeq gene 437510 438094 . - . ID=gene414;Name=phnH;gbkey=Gene;gene=phnH;gene_biotype=protein_coding;locus_tag=SH04_RS02075;old_locus_tag=SH04_02070 NZ_CP010443.1 Protein Homology CDS 437510 438094 . - 0 ID=cds387;Parent=gene414;Dbxref=Genbank:WP_000171628.1;Name=WP_000171628.1;gbkey=CDS;gene=phnH;product=alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH;protein_id=WP_000171628.1;transl_table=11 NZ_CP010443.1 RefSeq gene 438091 438543 . - . ID=gene415;Name=SH04_RS02080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02080;old_locus_tag=SH04_02075 NZ_CP010443.1 Protein Homology CDS 438091 438543 . - 0 ID=cds388;Parent=gene415;Dbxref=Genbank:WP_000542790.1;Name=WP_000542790.1;gbkey=CDS;product=alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG;protein_id=WP_000542790.1;transl_table=11 NZ_CP010443.1 RefSeq gene 438544 439269 . - . ID=gene416;Name=SH04_RS02085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02085;old_locus_tag=SH04_02080 NZ_CP010443.1 Protein Homology CDS 438544 439269 . - 0 ID=cds389;Parent=gene416;Dbxref=Genbank:WP_001295387.1;Name=WP_001295387.1;Note=may be involved in phosphonate uptake and biodegradation;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001295387.1;transl_table=11 NZ_CP010443.1 RefSeq gene 439290 440077 . - . ID=gene417;Name=SH04_RS02090;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS02090;pseudo=true NZ_CP010443.1 Protein Homology CDS 439290 440077 . - 0 ID=cds390;Parent=gene417;exception=annotated by transcript or proteomic data;gbkey=CDS;product=phosphonate ABC transporter permease;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 440183 441199 . - . ID=gene418;Name=SH04_RS02095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02095;old_locus_tag=SH04_02090 NZ_CP010443.1 Protein Homology CDS 440183 441199 . - 0 ID=cds391;Parent=gene418;Dbxref=Genbank:WP_000992002.1;Name=WP_000992002.1;Note=with PhnCE is involved in the transport of phosphonates;gbkey=CDS;product=phosphonates-binding periplasmic protein;protein_id=WP_000992002.1;transl_table=11 NZ_CP010443.1 RefSeq gene 441224 442012 . - . ID=gene419;Name=SH04_RS02100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02100;old_locus_tag=SH04_02095 NZ_CP010443.1 Protein Homology CDS 441224 442012 . - 0 ID=cds392;Parent=gene419;Dbxref=Genbank:WP_001193409.1;Name=WP_001193409.1;gbkey=CDS;product=phosphonates import ATP-binding protein PhnC;protein_id=WP_001193409.1;transl_table=11 NZ_CP010443.1 RefSeq gene 442145 442588 . - . ID=gene420;Name=SH04_RS02105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02105;old_locus_tag=SH04_02100 NZ_CP010443.1 Protein Homology CDS 442145 442588 . - 0 ID=cds393;Parent=gene420;Dbxref=Genbank:WP_001131339.1;Name=WP_001131339.1;gbkey=CDS;product=protein PhnB;protein_id=WP_001131339.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 442652 443210 . + . ID=id39;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 443246 443581 . - . ID=gene421;Name=SH04_RS02110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02110;old_locus_tag=SH04_02105 NZ_CP010443.1 Protein Homology CDS 443246 443581 . - 0 ID=cds394;Parent=gene421;Dbxref=Genbank:WP_001300891.1;Name=WP_001300891.1;gbkey=CDS;product=protein PhnA;protein_id=WP_001300891.1;transl_table=11 NZ_CP010443.1 RefSeq gene 443982 446210 . + . ID=gene422;Name=SH04_RS02115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02115;old_locus_tag=SH04_02110 NZ_CP010443.1 Protein Homology CDS 443982 446210 . + 0 ID=cds395;Parent=gene422;Dbxref=Genbank:WP_000288603.1;Name=WP_000288603.1;gbkey=CDS;product=clamp-binding protein CrfC;protein_id=WP_000288603.1;transl_table=11 NZ_CP010443.1 RefSeq gene 446207 447085 . + . ID=gene423;Name=SH04_RS02120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02120;old_locus_tag=SH04_02115 NZ_CP010443.1 Protein Homology CDS 446207 447085 . + 0 ID=cds396;Parent=gene423;Dbxref=Genbank:WP_000169188.1;Name=WP_000169188.1;gbkey=CDS;product=YjcZ family protein%3B yhjH motility defect suppressor;protein_id=WP_000169188.1;transl_table=11 NZ_CP010443.1 RefSeq gene 447349 448851 . + . ID=gene424;Name=SH04_RS02125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02125;old_locus_tag=SH04_02120 NZ_CP010443.1 Protein Homology CDS 447349 448851 . + 0 ID=cds397;Parent=gene424;Dbxref=Genbank:WP_001298520.1;Name=WP_001298520.1;gbkey=CDS;product=proline/betaine transporter;protein_id=WP_001298520.1;transl_table=11 NZ_CP010443.1 RefSeq gene 448963 449052 . + . ID=gene425;Name=SH04_RS02130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02130;old_locus_tag=SH04_02125 NZ_CP010443.1 Protein Homology CDS 448963 449052 . + 0 ID=cds398;Parent=gene425;Dbxref=Genbank:WP_000797657.1;Name=WP_000797657.1;gbkey=CDS;product=membrane-bound BasS regulator;protein_id=WP_000797657.1;transl_table=11 NZ_CP010443.1 RefSeq gene 449028 450119 . - . ID=gene426;Name=SH04_RS02135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02135;old_locus_tag=SH04_02130 NZ_CP010443.1 Protein Homology CDS 449028 450119 . - 0 ID=cds399;Parent=gene426;Dbxref=Genbank:WP_001300761.1;Name=WP_001300761.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_001300761.1;transl_table=11 NZ_CP010443.1 RefSeq gene 450129 450797 . - . ID=gene427;Name=SH04_RS02140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02140;old_locus_tag=SH04_02135 NZ_CP010443.1 Protein Homology CDS 450129 450797 . - 0 ID=cds400;Parent=gene427;Dbxref=Genbank:WP_000697926.1;Name=WP_000697926.1;Note=response regulator in two-component regulatory system with BasS;gbkey=CDS;product=two-component system response regulator;protein_id=WP_000697926.1;transl_table=11 NZ_CP010443.1 RefSeq gene 450794 452437 . - . ID=gene428;Name=SH04_RS02145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02145;old_locus_tag=SH04_02140 NZ_CP010443.1 Protein Homology CDS 450794 452437 . - 0 ID=cds401;Parent=gene428;Dbxref=Genbank:WP_000919792.1;Name=WP_000919792.1;gbkey=CDS;product=phosphoethanolamine transferase EptA;protein_id=WP_000919792.1;transl_table=11 NZ_CP010443.1 RefSeq gene 452541 453878 . - . ID=gene429;Name=SH04_RS02150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02150;old_locus_tag=SH04_02145 NZ_CP010443.1 Protein Homology CDS 452541 453878 . - 0 ID=cds402;Parent=gene429;Dbxref=Genbank:WP_000093154.1;Name=WP_000093154.1;gbkey=CDS;product=arginine/agmatine antiporter;protein_id=WP_000093154.1;transl_table=11 NZ_CP010443.1 RefSeq gene 454015 454776 . - . ID=gene430;Name=SH04_RS02155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02155;old_locus_tag=SH04_02150 NZ_CP010443.1 Protein Homology CDS 454015 454776 . - 0 ID=cds403;Parent=gene430;Dbxref=Genbank:WP_001217060.1;Name=WP_001217060.1;Note=regulates genes involved in arginine decarboxylase;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001217060.1;transl_table=11 NZ_CP010443.1 RefSeq gene 455101 457371 . - . ID=gene431;Name=SH04_RS02160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02160;old_locus_tag=SH04_02155 NZ_CP010443.1 Protein Homology CDS 455101 457371 . - 0 ID=cds404;Parent=gene431;Dbxref=Genbank:WP_000978651.1;Name=WP_000978651.1;Note=biodegradative%3B catalyzes the formation of agmatine from arginine;gbkey=CDS;product=arginine decarboxylase;protein_id=WP_000978651.1;transl_table=11 NZ_CP010443.1 RefSeq gene 457567 458475 . - . ID=gene432;Name=SH04_RS02165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02165;old_locus_tag=SH04_02160 NZ_CP010443.1 Protein Homology CDS 457567 458475 . - 0 ID=cds405;Parent=gene432;Dbxref=Genbank:WP_001090758.1;Name=WP_001090758.1;gbkey=CDS;product=melibiose operon regulatory protein;protein_id=WP_001090758.1;transl_table=11 NZ_CP010443.1 RefSeq gene 458507 458668 . + . ID=gene433;Name=SH04_RS02170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02170;old_locus_tag=SH04_02165 NZ_CP010443.1 Protein Homology CDS 458507 458668 . + 0 ID=cds406;Parent=gene433;Dbxref=Genbank:WP_032083345.1;Name=WP_032083345.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032083345.1;transl_table=11 NZ_CP010443.1 RefSeq gene 458758 460113 . + . ID=gene434;Name=SH04_RS02175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02175;old_locus_tag=SH04_02170 NZ_CP010443.1 Protein Homology CDS 458758 460113 . + 0 ID=cds407;Parent=gene434;Dbxref=Genbank:WP_000986601.1;Name=WP_000986601.1;Note=catalyses the hydrolysis of terminal non-reducing alpha-D-galactose residues in alpha-D-galactosides;gbkey=CDS;product=alpha-galactosidase;protein_id=WP_000986601.1;transl_table=11 NZ_CP010443.1 RefSeq gene 460216 461637 . + . ID=gene435;Name=SH04_RS02180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02180;old_locus_tag=SH04_02175 NZ_CP010443.1 Protein Homology CDS 460216 461637 . + 0 ID=cds408;Parent=gene435;Dbxref=Genbank:WP_000028111.1;Name=WP_000028111.1;gbkey=CDS;product=melibiose carrier protein;protein_id=WP_000028111.1;transl_table=11 NZ_CP010443.1 RefSeq gene 461776 462405 . - . ID=gene436;Name=SH04_RS02185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02185;old_locus_tag=SH04_02180 NZ_CP010443.1 Protein Homology CDS 461776 462405 . - 0 ID=cds409;Parent=gene436;Dbxref=Genbank:WP_000198773.1;Name=WP_000198773.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000198773.1;transl_table=11 NZ_CP010443.1 RefSeq gene 462527 464173 . - . ID=gene437;Name=SH04_RS02190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02190;old_locus_tag=SH04_02185 NZ_CP010443.1 Protein Homology CDS 462527 464173 . - 0 ID=cds410;Parent=gene437;Dbxref=Genbank:WP_000066707.1;Name=WP_000066707.1;Note=catalyzes the formation of malate from fumerate;gbkey=CDS;product=fumarate hydratase class I%2C anaerobic;protein_id=WP_000066707.1;transl_table=11 NZ_CP010443.1 RefSeq gene 464251 465591 . - . ID=gene438;Name=SH04_RS02195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02195;old_locus_tag=SH04_02190 NZ_CP010443.1 Protein Homology CDS 464251 465591 . - 0 ID=cds411;Parent=gene438;Dbxref=Genbank:WP_000899522.1;Name=WP_000899522.1;Note=functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate%3B similar to DcuA%3B DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate%2C malate%2C fumarate and succinate) transporters;gbkey=CDS;product=anaerobic C4-dicarboxylate transporter DcuB;protein_id=WP_000899522.1;transl_table=11 NZ_CP010443.1 RefSeq gene 466057 466185 . + . ID=gene439;Name=SH04_RS02200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS02200;partial=true;pseudo=true;start_range=.,466057 NZ_CP010443.1 Protein Homology CDS 466057 466185 . + 0 ID=cds412;Parent=gene439;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=glutamate decarboxylase;pseudo=true;start_range=.,466057;transl_table=11 NZ_CP010443.1 RefSeq gene 466162 466881 . - . ID=gene440;Name=SH04_RS02205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02205;old_locus_tag=SH04_02200 NZ_CP010443.1 Protein Homology CDS 466162 466881 . - 0 ID=cds413;Parent=gene440;Dbxref=Genbank:WP_000611288.1;Name=WP_000611288.1;Note=response regulator in two-component regulatory system with DcuS%3B phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000611288.1;transl_table=11 NZ_CP010443.1 RefSeq gene 466878 468509 . - . ID=gene441;Name=SH04_RS02210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02210;old_locus_tag=SH04_02205 NZ_CP010443.1 Protein Homology CDS 466878 468509 . - 0 ID=cds414;Parent=gene441;Dbxref=Genbank:WP_001216477.1;Name=WP_001216477.1;Note=C4-dicarboxylate-sensing histidine kinase%3B part of two-component regulatory system with DcuR%3B regulates anaerobic fumarate respiration;gbkey=CDS;product=sensor histidine kinase;protein_id=WP_001216477.1;transl_table=11 NZ_CP010443.1 RefSeq gene 468690 468920 . + . ID=gene442;Name=SH04_RS02215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02215;old_locus_tag=SH04_02210 NZ_CP010443.1 Protein Homology CDS 468690 468920 . + 0 ID=cds415;Parent=gene442;Dbxref=Genbank:WP_000371704.1;Name=WP_000371704.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000371704.1;transl_table=11 NZ_CP010443.1 RefSeq gene 468932 469204 . + . ID=gene443;Name=SH04_RS02220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02220;old_locus_tag=SH04_02215 NZ_CP010443.1 Protein Homology CDS 468932 469204 . + 0 ID=cds416;Parent=gene443;Dbxref=Genbank:WP_000405651.1;Name=WP_000405651.1;gbkey=CDS;product=GNAT family acetyltransferase;protein_id=WP_000405651.1;transl_table=11 NZ_CP010443.1 RefSeq gene 469521 469727 . + . ID=gene444;Name=SH04_RS02225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02225;old_locus_tag=SH04_02220 NZ_CP010443.1 Protein Homology CDS 469521 469727 . + 0 ID=cds417;Parent=gene444;Dbxref=Genbank:WP_000272165.1;Name=WP_000272165.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000272165.1;transl_table=11 NZ_CP010443.1 RefSeq gene 469755 469928 . + . ID=gene445;Name=SH04_RS02230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02230;old_locus_tag=SH04_02225 NZ_CP010443.1 Protein Homology CDS 469755 469928 . + 0 ID=cds418;Parent=gene445;Dbxref=Genbank:WP_001173343.1;Name=WP_001173343.1;gbkey=CDS;product=toxin of GhoTS toxin-antitoxin pair%3B membrane-lytic protein%3B stimulator of persister cell formation;protein_id=WP_001173343.1;transl_table=11 NZ_CP010443.1 RefSeq gene 470047 471564 . - . ID=gene446;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=SH04_RS02235;old_locus_tag=SH04_02230 NZ_CP010443.1 Protein Homology CDS 470047 471564 . - 0 ID=cds419;Parent=gene446;Dbxref=Genbank:WP_001295074.1;Name=WP_001295074.1;Note=class II%3B LysRS2%3B catalyzes a two-step reaction%2C first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B in Methanosarcina barkeri%2C LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1;gbkey=CDS;gene=lysS;product=lysine--tRNA ligase heat inducible;protein_id=WP_001295074.1;transl_table=11 NZ_CP010443.1 RefSeq gene 471801 473258 . - . ID=gene447;Name=SH04_RS02240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02240;old_locus_tag=SH04_02235 NZ_CP010443.1 Protein Homology CDS 471801 473258 . - 0 ID=cds420;Parent=gene447;Dbxref=Genbank:WP_000856829.1;Name=WP_000856829.1;gbkey=CDS;product=dipeptide and tripeptide permease C;protein_id=WP_000856829.1;transl_table=11 NZ_CP010443.1 RefSeq gene 473317 475464 . - . ID=gene448;Name=SH04_RS02245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02245;old_locus_tag=SH04_02240 NZ_CP010443.1 Protein Homology CDS 473317 475464 . - 0 ID=cds421;Parent=gene448;Dbxref=Genbank:WP_001295383.1;Name=WP_001295383.1;Note=constitutive%3B catalyzes the formation of cadaverine from lysine;gbkey=CDS;product=lysine decarboxylase inducible;protein_id=WP_001295383.1;transl_table=11 NZ_CP010443.1 RefSeq gene 475544 476878 . - . ID=gene449;Name=cadB;gbkey=Gene;gene=cadB;gene_biotype=protein_coding;locus_tag=SH04_RS02250;old_locus_tag=SH04_02245 NZ_CP010443.1 Protein Homology CDS 475544 476878 . - 0 ID=cds422;Parent=gene449;Dbxref=Genbank:WP_000092909.1;Name=WP_000092909.1;Note=antiporter protein responsible for lysine import and cadaverine export%3B member of the lysine-dependent acid resistance system 4 (AR4)%3B inner membrane protein;gbkey=CDS;gene=cadB;product=cadaverine/lysine antiporter;protein_id=WP_000092909.1;transl_table=11 NZ_CP010443.1 RefSeq gene 477243 478781 . - . ID=gene450;Name=SH04_RS02255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02255;old_locus_tag=SH04_02250 NZ_CP010443.1 Protein Homology CDS 477243 478781 . - 0 ID=cds423;Parent=gene450;Dbxref=Genbank:WP_001187173.1;Name=WP_001187173.1;Note=regulates the cadBA operon;gbkey=CDS;product=transcriptional activator CadC;protein_id=WP_001187173.1;transl_table=11 NZ_CP010443.1 RefSeq gene 479398 479473 . - . ID=gene451;Name=SH04_RS02260;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS02260;old_locus_tag=SH04_02255 NZ_CP010443.1 tRNAscan-SE tRNA 479398 479473 . - . ID=rna27;Parent=gene451;anticodon=(pos:complement(479438..479440));gbkey=tRNA;product=tRNA-Phe NZ_CP010443.1 tRNAscan-SE exon 479398 479473 . - . ID=id40;Parent=rna27;anticodon=(pos:complement(479438..479440));gbkey=tRNA;product=tRNA-Phe NZ_CP010443.1 RefSeq gene 479580 480155 . - . ID=gene452;Name=SH04_RS02265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02265;old_locus_tag=SH04_02260 NZ_CP010443.1 Protein Homology CDS 479580 480155 . - 0 ID=cds424;Parent=gene452;Dbxref=Genbank:WP_001188520.1;Name=WP_001188520.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001188520.1;transl_table=11 NZ_CP010443.1 RefSeq gene 480192 481889 . - . ID=gene453;Name=dipZ;gbkey=Gene;gene=dipZ;gene_biotype=protein_coding;locus_tag=SH04_RS02270;old_locus_tag=SH04_02265 NZ_CP010443.1 Protein Homology CDS 480192 481889 . - 0 ID=cds425;Parent=gene453;Dbxref=Genbank:WP_000068922.1;Name=WP_000068922.1;Note=two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm%3B DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm;gbkey=CDS;gene=dipZ;product=thiol:disulfide interchange protein DsbD;protein_id=WP_000068922.1;transl_table=11 NZ_CP010443.1 RefSeq gene 481865 482203 . - . ID=gene454;Name=SH04_RS02275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02275;old_locus_tag=SH04_02270 NZ_CP010443.1 Protein Homology CDS 481865 482203 . - 0 ID=cds426;Parent=gene454;Dbxref=Genbank:WP_000883400.1;Name=WP_000883400.1;Note=copper binding protein required for copper tolerance%3B involved in resistance toward heavy metals;gbkey=CDS;product=divalent-cation tolerance protein CutA;protein_id=WP_000883400.1;transl_table=11 NZ_CP010443.1 RefSeq gene 482319 483620 . - . ID=gene455;Name=SH04_RS02280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02280;old_locus_tag=SH04_02275 NZ_CP010443.1 Protein Homology CDS 482319 483620 . - 0 ID=cds427;Parent=gene455;Dbxref=Genbank:WP_000961959.1;Name=WP_000961959.1;Note=functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate%3B similar to dcuB;gbkey=CDS;product=anaerobic C4-dicarboxylate transporter DcuA;protein_id=WP_000961959.1;transl_table=11 NZ_CP010443.1 RefSeq gene 483738 485174 . - . ID=gene456;Name=aspA;gbkey=Gene;gene=aspA;gene_biotype=protein_coding;locus_tag=SH04_RS02285;old_locus_tag=SH04_02280 NZ_CP010443.1 Protein Homology CDS 483738 485174 . - 0 ID=cds428;Parent=gene456;Dbxref=Genbank:WP_000069437.1;Name=WP_000069437.1;Note=catalyzes the formation of fumarate from aspartate;gbkey=CDS;gene=aspA;product=aspartate ammonia-lyase;protein_id=WP_000069437.1;transl_table=11 NZ_CP010443.1 RefSeq gene 485511 485987 . + . ID=gene457;Name=fxsA;gbkey=Gene;gene=fxsA;gene_biotype=protein_coding;locus_tag=SH04_RS02290;old_locus_tag=SH04_02285 NZ_CP010443.1 Protein Homology CDS 485511 485987 . + 0 ID=cds429;Parent=gene457;Dbxref=Genbank:WP_001267448.1;Name=WP_001267448.1;Note=F exclusion of bacteriophage T7%3B overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7%3B interacts with the F plasmid-encoded PifA protein%3B inner membrane protein;gbkey=CDS;gene=fxsA;product=suppressor of F exclusion of phage T7;protein_id=WP_001267448.1;transl_table=11 NZ_CP010443.1 RefSeq gene 486003 487259 . - . ID=gene458;Name=SH04_RS02295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02295;old_locus_tag=SH04_02290 NZ_CP010443.1 Protein Homology CDS 486003 487259 . - 0 ID=cds430;Parent=gene458;Dbxref=Genbank:WP_000015837.1;Name=WP_000015837.1;Note=uncharacterized member of the APC superfamily of amino acid transporters%3B unknown function;gbkey=CDS;product=hypothetical protein;protein_id=WP_000015837.1;transl_table=11 NZ_CP010443.1 RefSeq gene 487535 487828 . + . ID=gene459;Name=groES;gbkey=Gene;gene=groES;gene_biotype=protein_coding;locus_tag=SH04_RS02300;old_locus_tag=SH04_02295 NZ_CP010443.1 Protein Homology CDS 487535 487828 . + 0 ID=cds431;Parent=gene459;Dbxref=Genbank:WP_001026276.1;Name=WP_001026276.1;Note=10 kDa chaperonin%3B Cpn10%3B GroES%3B forms homoheptameric ring%3B binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it%3B folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES%3B release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring;gbkey=CDS;gene=groES;product=molecular chaperone GroES;protein_id=WP_001026276.1;transl_table=11 NZ_CP010443.1 RefSeq gene 487872 489518 . + . ID=gene460;Name=groEL;gbkey=Gene;gene=groEL;gene_biotype=protein_coding;locus_tag=SH04_RS02305;old_locus_tag=SH04_02300 NZ_CP010443.1 Protein Homology CDS 487872 489518 . + 0 ID=cds432;Parent=gene460;Dbxref=Genbank:WP_000729117.1;Name=WP_000729117.1;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds%3B many bacteria have multiple copies of the groEL gene which are active under different environmental conditions%3B the B.japonicum protein in this cluster is expressed constitutively%3B in Rhodobacter%2C Corynebacterium and Rhizobium this protein is essential for growth;gbkey=CDS;gene=groEL;product=chaperonin GroEL;protein_id=WP_000729117.1;transl_table=11 NZ_CP010443.1 RefSeq gene 489656 490009 . + . ID=gene461;Name=SH04_RS02310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02310;old_locus_tag=SH04_02305 NZ_CP010443.1 Protein Homology CDS 489656 490009 . + 0 ID=cds433;Parent=gene461;Dbxref=Genbank:WP_000558209.1;Name=WP_000558209.1;gbkey=CDS;product=DUF4156 domain-containing protein;protein_id=WP_000558209.1;transl_table=11 NZ_CP010443.1 RefSeq gene 490212 491081 . - . ID=gene462;Name=SH04_RS02315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02315;old_locus_tag=SH04_02310 NZ_CP010443.1 Protein Homology CDS 490212 491081 . - 0 ID=cds434;Parent=gene462;Dbxref=Genbank:WP_001008040.1;Name=WP_001008040.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001008040.1;transl_table=11 NZ_CP010443.1 RefSeq gene 491476 492504 . - . ID=gene463;Name=SH04_RS02320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02320;old_locus_tag=SH04_02315 NZ_CP010443.1 Protein Homology CDS 491476 492504 . - 0 ID=cds435;Parent=gene463;Dbxref=Genbank:WP_000940549.1;Name=WP_000940549.1;gbkey=CDS;product=EF-P beta-lysylation protein EpmB;protein_id=WP_000940549.1;transl_table=11 NZ_CP010443.1 RefSeq gene 492546 493112 . + . ID=gene464;Name=SH04_RS02325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02325;old_locus_tag=SH04_02320 NZ_CP010443.1 Protein Homology CDS 492546 493112 . + 0 ID=cds436;Parent=gene464;Dbxref=Genbank:WP_000257278.1;Name=WP_000257278.1;gbkey=CDS;product=elongation factor P;protein_id=WP_000257278.1;transl_table=11 NZ_CP010443.1 RefSeq gene 493164 493289 . + . ID=gene465;Name=SH04_RS02330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02330;old_locus_tag=SH04_02325 NZ_CP010443.1 Protein Homology CDS 493164 493289 . + 0 ID=cds437;Parent=gene465;Dbxref=Genbank:WP_000977757.1;Name=WP_000977757.1;Note=acts as and antidote to the bacteriolytic entericidin B in the EcnAB toxin-antitoxin complex;gbkey=CDS;product=entericidin A;protein_id=WP_000977757.1;transl_table=11 NZ_CP010443.1 RefSeq gene 493400 493546 . + . ID=gene466;Name=SH04_RS02335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02335;old_locus_tag=SH04_02330 NZ_CP010443.1 Protein Homology CDS 493400 493546 . + 0 ID=cds438;Parent=gene466;Dbxref=Genbank:WP_000239596.1;Name=WP_000239596.1;gbkey=CDS;product=entericidin B;protein_id=WP_000239596.1;transl_table=11 NZ_CP010443.1 RefSeq gene 493722 494039 . + . ID=gene467;Name=SH04_RS02340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02340;old_locus_tag=SH04_02335 NZ_CP010443.1 Protein Homology CDS 493722 494039 . + 0 ID=cds439;Parent=gene467;Dbxref=Genbank:WP_000118482.1;Name=WP_000118482.1;Note=member of the SMR family of proton-dependent drug efflux transporters%3B quaternary ammonium compound efflux pump%3B confers resistance to cetylpyridinium%2C cetyldimethylethyl ammonium and cetrimide cations;gbkey=CDS;product=quaternary ammonium compound-resistance protein SugE;protein_id=WP_000118482.1;transl_table=11 NZ_CP010443.1 RefSeq gene 494036 494569 . - . ID=gene468;Name=SH04_RS02345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02345;old_locus_tag=SH04_02340 NZ_CP010443.1 Protein Homology CDS 494036 494569 . - 0 ID=cds440;Parent=gene468;Dbxref=Genbank:WP_001238378.1;Name=WP_001238378.1;Note=lipocalin%3B globomycin-sensitive outer membrane lipoprotein;gbkey=CDS;product=hypothetical protein;protein_id=WP_001238378.1;transl_table=11 NZ_CP010443.1 RefSeq gene 494658 495791 . - . ID=gene469;Name=SH04_RS02350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02350;old_locus_tag=SH04_02345 NZ_CP010443.1 Protein Homology CDS 494658 495791 . - 0 ID=cds441;Parent=gene469;Dbxref=Genbank:WP_001336292.1;Name=WP_001336292.1;gbkey=CDS;product=BlaEC family class C beta-lactamase;protein_id=WP_001336292.1;transl_table=11 NZ_CP010443.1 RefSeq gene 495854 496213 . - . ID=gene470;Name=SH04_RS02355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02355;old_locus_tag=SH04_02350 NZ_CP010443.1 Protein Homology CDS 495854 496213 . - 0 ID=cds442;Parent=gene470;Dbxref=Genbank:WP_000609663.1;Name=WP_000609663.1;Note=in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane;gbkey=CDS;product=fumarate reductase subunit D;protein_id=WP_000609663.1;transl_table=11 NZ_CP010443.1 RefSeq gene 496224 496619 . - . ID=gene471;Name=SH04_RS02360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02360;old_locus_tag=SH04_02355 NZ_CP010443.1 Protein Homology CDS 496224 496619 . - 0 ID=cds443;Parent=gene471;Dbxref=Genbank:WP_000208757.1;Name=WP_000208757.1;Note=part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB;gbkey=CDS;product=fumarate reductase subunit C;protein_id=WP_000208757.1;transl_table=11 NZ_CP010443.1 RefSeq gene 496630 497364 . - . ID=gene472;Name=SH04_RS02365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02365;old_locus_tag=SH04_02360 NZ_CP010443.1 Protein Homology CDS 496630 497364 . - 0 ID=cds444;Parent=gene472;Dbxref=Genbank:WP_000829498.1;Name=WP_000829498.1;Note=part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB;gbkey=CDS;product=fumarate reductase iron-sulfur subunit;protein_id=WP_000829498.1;transl_table=11 NZ_CP010443.1 RefSeq gene 497357 499165 . - . ID=gene473;Name=SH04_RS02370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02370;old_locus_tag=SH04_02365 NZ_CP010443.1 Protein Homology CDS 497357 499165 . - 0 ID=cds445;Parent=gene473;Dbxref=Genbank:WP_001192973.1;Name=WP_001192973.1;Note=part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB;gbkey=CDS;product=fumarate reductase flavoprotein subunit;protein_id=WP_001192973.1;transl_table=11 NZ_CP010443.1 RefSeq gene 499490 500467 . + . ID=gene474;Name=SH04_RS02375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02375;old_locus_tag=SH04_02370 NZ_CP010443.1 Protein Homology CDS 499490 500467 . + 0 ID=cds446;Parent=gene474;Dbxref=Genbank:WP_000004771.1;Name=WP_000004771.1;Note=poxA%3B regulates pyruvate oxidase poxB;gbkey=CDS;product=elongation factor P--(R)-beta-lysine ligase;protein_id=WP_000004771.1;transl_table=11 NZ_CP010443.1 RefSeq gene 500686 502188 . + . ID=gene475;Name=SH04_RS02380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02380;old_locus_tag=SH04_02375 NZ_CP010443.1 Protein Homology CDS 500686 502188 . + 0 ID=cds447;Parent=gene475;Dbxref=Genbank:WP_001336293.1;Name=WP_001336293.1;gbkey=CDS;product=inner membrane transporter YjeM;protein_id=WP_001336293.1;transl_table=11 NZ_CP010443.1 RefSeq gene 502240 502554 . + . ID=gene476;Name=SH04_RS02385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02385;old_locus_tag=SH04_02380 NZ_CP010443.1 Protein Homology CDS 502240 502554 . + 0 ID=cds448;Parent=gene476;Dbxref=Genbank:WP_000342867.1;Name=WP_000342867.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000342867.1;transl_table=11 NZ_CP010443.1 RefSeq gene 502551 502865 . + . ID=gene477;Name=SH04_RS02390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02390;old_locus_tag=SH04_02385 NZ_CP010443.1 Protein Homology CDS 502551 502865 . + 0 ID=cds449;Parent=gene477;Dbxref=Genbank:WP_001276180.1;Name=WP_001276180.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001276180.1;transl_table=11 NZ_CP010443.1 RefSeq gene 502894 506217 . - . ID=gene478;Name=SH04_RS02395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02395;old_locus_tag=SH04_02390 NZ_CP010443.1 Protein Homology CDS 502894 506217 . - 0 ID=cds450;Parent=gene478;Dbxref=Genbank:WP_001236847.1;Name=WP_001236847.1;gbkey=CDS;product=miniconductance mechanosensitive channel MscM;protein_id=WP_001236847.1;transl_table=11 NZ_CP010443.1 RefSeq gene 506239 507207 . - . ID=gene479;Name=psd;gbkey=Gene;gene=psd;gene_biotype=protein_coding;locus_tag=SH04_RS02400;old_locus_tag=SH04_02395 NZ_CP010443.1 Protein Homology CDS 506239 507207 . - 0 ID=cds451;Parent=gene479;Dbxref=Genbank:WP_000934920.1;Name=WP_000934920.1;Note=catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine;gbkey=CDS;gene=psd;product=phosphatidylserine decarboxylase proenzyme;protein_id=WP_000934920.1;transl_table=11 NZ_CP010443.1 RefSeq gene 507304 508356 . - . ID=gene480;Name=SH04_RS02405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02405;old_locus_tag=SH04_02400 NZ_CP010443.1 Protein Homology CDS 507304 508356 . - 0 ID=cds452;Parent=gene480;Dbxref=Genbank:WP_000041964.1;Name=WP_000041964.1;Note=EngC%3B RsgA%3B CpgA%3B circularly permuted GTPase%3B ribosome small subunit-dependent GTPase A%3B has the pattern G4-G1-G3 as opposed to other GTPases%3B interacts strongly with 30S ribosome which stimulates GTPase activity;gbkey=CDS;product=ribosome small subunit-dependent GTPase A;protein_id=WP_000041964.1;transl_table=11 NZ_CP010443.1 RefSeq gene 508451 508996 . + . ID=gene481;Name=SH04_RS02410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02410;old_locus_tag=SH04_02405 NZ_CP010443.1 Protein Homology CDS 508451 508996 . + 0 ID=cds453;Parent=gene481;Dbxref=Genbank:WP_001295188.1;Name=WP_001295188.1;Note=3'-5' exoribonuclease specific for small oligoribonuclotides;gbkey=CDS;product=oligoribonuclease;protein_id=WP_001295188.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 509207 509507 . + . ID=id41;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 509207 509282 . + . ID=gene482;Name=SH04_RS02415;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS02415;old_locus_tag=SH04_02410 NZ_CP010443.1 tRNAscan-SE tRNA 509207 509282 . + . ID=rna28;Parent=gene482;anticodon=(pos:509240..509242);gbkey=tRNA;product=tRNA-Gly NZ_CP010443.1 tRNAscan-SE exon 509207 509282 . + . ID=id42;Parent=rna28;anticodon=(pos:509240..509242);gbkey=tRNA;product=tRNA-Gly NZ_CP010443.1 RefSeq gene 509319 509394 . + . ID=gene483;Name=SH04_RS02420;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS02420;old_locus_tag=SH04_02415 NZ_CP010443.1 tRNAscan-SE tRNA 509319 509394 . + . ID=rna29;Parent=gene483;anticodon=(pos:509352..509354);gbkey=tRNA;product=tRNA-Gly NZ_CP010443.1 tRNAscan-SE exon 509319 509394 . + . ID=id43;Parent=rna29;anticodon=(pos:509352..509354);gbkey=tRNA;product=tRNA-Gly NZ_CP010443.1 RefSeq gene 509430 509505 . + . ID=gene484;Name=SH04_RS02425;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS02425;old_locus_tag=SH04_02420 NZ_CP010443.1 tRNAscan-SE tRNA 509430 509505 . + . ID=rna30;Parent=gene484;anticodon=(pos:509463..509465);gbkey=tRNA;product=tRNA-Gly NZ_CP010443.1 tRNAscan-SE exon 509430 509505 . + . ID=id44;Parent=rna30;anticodon=(pos:509463..509465);gbkey=tRNA;product=tRNA-Gly NZ_CP010443.1 RefSeq gene 509775 510914 . - . ID=gene485;Name=SH04_RS02430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02430;old_locus_tag=SH04_02425 NZ_CP010443.1 Protein Homology CDS 509775 510914 . - 0 ID=cds454;Parent=gene485;Dbxref=Genbank:WP_001294219.1;Name=WP_001294219.1;gbkey=CDS;product=epoxyqueuosine reductase;protein_id=WP_001294219.1;transl_table=11 NZ_CP010443.1 RefSeq gene 510928 512460 . + . ID=gene486;Name=SH04_RS02435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02435;old_locus_tag=SH04_02430 NZ_CP010443.1 Protein Homology CDS 510928 512460 . + 0 ID=cds455;Parent=gene486;Dbxref=Genbank:WP_001339108.1;Name=WP_001339108.1;gbkey=CDS;product=carbohydrate kinase;protein_id=WP_001339108.1;transl_table=11 NZ_CP010443.1 RefSeq gene 512432 512893 . + . ID=gene487;Name=SH04_RS02440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02440;old_locus_tag=SH04_02435 NZ_CP010443.1 Protein Homology CDS 512432 512893 . + 0 ID=cds456;Parent=gene487;Dbxref=Genbank:WP_000981977.1;Name=WP_000981977.1;Note=needed for nucleoid integrity%3B possibly involved in cell wall synthesis;gbkey=CDS;product=tRNA threonylcarbamoyladenosine biosynthesis protein TsaE;protein_id=WP_000981977.1;transl_table=11 NZ_CP010443.1 RefSeq gene 512912 514249 . + . ID=gene488;Name=SH04_RS02445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02445;old_locus_tag=SH04_02440 NZ_CP010443.1 Protein Homology CDS 512912 514249 . + 0 ID=cds457;Parent=gene488;Dbxref=Genbank:WP_000990333.1;Name=WP_000990333.1;gbkey=CDS;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_000990333.1;transl_table=11 NZ_CP010443.1 RefSeq gene 514259 516106 . + . ID=gene489;Name=SH04_RS02450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02450;old_locus_tag=SH04_02445 NZ_CP010443.1 Protein Homology CDS 514259 516106 . + 0 ID=cds458;Parent=gene489;Dbxref=Genbank:WP_001122505.1;Name=WP_001122505.1;gbkey=CDS;product=DNA mismatch repair protein MutL;protein_id=WP_001122505.1;transl_table=11 NZ_CP010443.1 RefSeq gene 516099 517049 . + . ID=gene490;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=SH04_RS02455;old_locus_tag=SH04_02450 NZ_CP010443.1 Protein Homology CDS 516099 517049 . + 0 ID=cds459;Parent=gene490;Dbxref=Genbank:WP_001280345.1;Name=WP_001280345.1;Note=IPP transferase%3B isopentenyltransferase%3B involved in tRNA modification%3B in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil%3B further tRNA modifications may occur%3B mutations in miaA result in defects in translation efficiency and fidelity;gbkey=CDS;gene=miaA;product=tRNA dimethylallyltransferase;protein_id=WP_001280345.1;transl_table=11 NZ_CP010443.1 RefSeq gene 517135 517443 . + . ID=gene491;Name=hfq;gbkey=Gene;gene=hfq;gene_biotype=protein_coding;locus_tag=SH04_RS02460;old_locus_tag=SH04_02455 NZ_CP010443.1 Protein Homology CDS 517135 517443 . + 0 ID=cds460;Parent=gene491;Dbxref=Genbank:WP_001051883.1;Name=WP_001051883.1;Note=HF-I%2C host factor for RNA phage Q beta replication;gbkey=CDS;gene=hfq;product=RNA chaperone Hfq;protein_id=WP_001051883.1;transl_table=11 NZ_CP010443.1 RefSeq gene 517519 518799 . + . ID=gene492;Name=SH04_RS02465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02465;old_locus_tag=SH04_02460 NZ_CP010443.1 Protein Homology CDS 517519 518799 . + 0 ID=cds461;Parent=gene492;Dbxref=Genbank:WP_000460362.1;Name=WP_000460362.1;Note=involved in modulation of proteins HflK and HflC%3B part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein;gbkey=CDS;product=GTPase HflX;protein_id=WP_000460362.1;transl_table=11 NZ_CP010443.1 RefSeq gene 518885 520144 . + . ID=gene493;Name=SH04_RS02470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02470;old_locus_tag=SH04_02465 NZ_CP010443.1 Protein Homology CDS 518885 520144 . + 0 ID=cds462;Parent=gene493;Dbxref=Genbank:WP_000312488.1;Name=WP_000312488.1;Note=with HflC inhibits proteolysis of lambda cII protein by FtsH;gbkey=CDS;product=cell division protein FtsH;protein_id=WP_000312488.1;transl_table=11 NZ_CP010443.1 RefSeq gene 520147 521151 . + . ID=gene494;Name=SH04_RS02475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02475;old_locus_tag=SH04_02470 NZ_CP010443.1 Protein Homology CDS 520147 521151 . + 0 ID=cds463;Parent=gene494;Dbxref=Genbank:WP_001232412.1;Name=WP_001232412.1;Note=with HflK inhibits proteolysis of lambda cII protein by FtsH;gbkey=CDS;product=modulator of FtsH protease HflC;protein_id=WP_001232412.1;transl_table=11 NZ_CP010443.1 RefSeq gene 521233 521430 . + . ID=gene495;Name=SH04_RS02480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02480;old_locus_tag=SH04_02475 NZ_CP010443.1 Protein Homology CDS 521233 521430 . + 0 ID=cds464;Parent=gene495;Dbxref=Genbank:WP_001089295.1;Name=WP_001089295.1;gbkey=CDS;product=membrane protein;protein_id=WP_001089295.1;transl_table=11 NZ_CP010443.1 RefSeq gene 521534 522832 . + . ID=gene496;Name=SH04_RS02485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02485;old_locus_tag=SH04_02480 NZ_CP010443.1 Protein Homology CDS 521534 522832 . + 0 ID=cds465;Parent=gene496;Dbxref=Genbank:WP_000527955.1;Name=WP_000527955.1;Note=catalyzes the formation of N6-(1%2C2%2C-dicarboxyethyl)-AMP from L-aspartate%2C inosine monophosphate and GTP in AMP biosynthesis;gbkey=CDS;product=adenylosuccinate synthetase;protein_id=WP_000527955.1;transl_table=11 NZ_CP010443.1 RefSeq gene 523037 523462 . + . ID=gene497;Name=SH04_RS02490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02490;old_locus_tag=SH04_02485 NZ_CP010443.1 Protein Homology CDS 523037 523462 . + 0 ID=cds466;Parent=gene497;Dbxref=Genbank:WP_001177639.1;Name=WP_001177639.1;Note=negatively regulates the transcription of genes upregulated by nitrosative stress;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001177639.1;transl_table=11 NZ_CP010443.1 RefSeq gene 523501 525942 . + . ID=gene498;Name=SH04_RS02495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02495;old_locus_tag=SH04_02490 NZ_CP010443.1 Protein Homology CDS 523501 525942 . + 0 ID=cds467;Parent=gene498;Dbxref=Genbank:WP_046377545.1;Name=WP_046377545.1;Note=3'-5'exoribonuclease that acts nonspecifically on poly(A)%2C poly(U) and ribosomal RNAs;gbkey=CDS;product=exoribonuclease R;protein_id=WP_046377545.1;transl_table=11 NZ_CP010443.1 RefSeq gene 526122 526853 . + . ID=gene499;Name=SH04_RS02500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02500;old_locus_tag=SH04_02495 NZ_CP010443.1 Protein Homology CDS 526122 526853 . + 0 ID=cds468;Parent=gene499;Dbxref=Genbank:WP_001293282.1;Name=WP_001293282.1;Note=Specifically methylates the ribose of guanosine 2251 in 23S rRNA;gbkey=CDS;product=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;protein_id=WP_001293282.1;transl_table=11 NZ_CP010443.1 RefSeq gene 526980 527381 . + . ID=gene500;Name=SH04_RS02505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02505;old_locus_tag=SH04_02500 NZ_CP010443.1 Protein Homology CDS 526980 527381 . + 0 ID=cds469;Parent=gene500;Dbxref=Genbank:WP_000220128.1;Name=WP_000220128.1;gbkey=CDS;product=DUF2170 domain-containing protein;protein_id=WP_000220128.1;transl_table=11 NZ_CP010443.1 RefSeq gene 527400 528098 . + . ID=gene501;Name=SH04_RS02510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02510;old_locus_tag=SH04_02505 NZ_CP010443.1 Protein Homology CDS 527400 528098 . + 0 ID=cds470;Parent=gene501;Dbxref=Genbank:WP_000511955.1;Name=WP_000511955.1;gbkey=CDS;product=PspA/IM30 family protein;protein_id=WP_000511955.1;transl_table=11 NZ_CP010443.1 RefSeq gene 528149 528808 . + . ID=gene502;Name=SH04_RS02515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02515;old_locus_tag=SH04_02510 NZ_CP010443.1 Protein Homology CDS 528149 528808 . + 0 ID=cds471;Parent=gene502;Dbxref=Genbank:WP_000012550.1;Name=WP_000012550.1;gbkey=CDS;product=DUF2491 domain-containing protein;protein_id=WP_000012550.1;transl_table=11 NZ_CP010443.1 RefSeq gene 528826 529224 . + . ID=gene503;Name=SH04_RS02520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02520;old_locus_tag=SH04_02515 NZ_CP010443.1 Protein Homology CDS 528826 529224 . + 0 ID=cds472;Parent=gene503;Dbxref=Genbank:WP_000547760.1;Name=WP_000547760.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000547760.1;transl_table=11 NZ_CP010443.1 RefSeq gene 529234 529872 . + . ID=gene504;Name=SH04_RS02525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02525;old_locus_tag=SH04_02520 NZ_CP010443.1 Protein Homology CDS 529234 529872 . + 0 ID=cds473;Parent=gene504;Dbxref=Genbank:WP_000101658.1;Name=WP_000101658.1;gbkey=CDS;product=DUF1190 domain-containing protein;protein_id=WP_000101658.1;transl_table=11 NZ_CP010443.1 RefSeq gene 529875 531038 . + . ID=gene505;Name=SH04_RS02530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02530;old_locus_tag=SH04_02525 NZ_CP010443.1 Protein Homology CDS 529875 531038 . + 0 ID=cds474;Parent=gene505;Dbxref=Genbank:WP_000943959.1;Name=WP_000943959.1;gbkey=CDS;product=ATP-Grasp family ATPase;protein_id=WP_000943959.1;transl_table=11 NZ_CP010443.1 RefSeq gene 531122 532747 . + . ID=gene506;Name=SH04_RS02535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02535;old_locus_tag=SH04_02530 NZ_CP010443.1 Protein Homology CDS 531122 532747 . + 0 ID=cds475;Parent=gene506;Dbxref=Genbank:WP_001350567.1;Name=WP_001350567.1;Note=catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA;gbkey=CDS;product=DNA alkylation damage repair protein;protein_id=WP_001350567.1;transl_table=11 NZ_CP010443.1 RefSeq gene 532864 533139 . - . ID=gene507;Name=SH04_RS02540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02540;old_locus_tag=SH04_02535 NZ_CP010443.1 Protein Homology CDS 532864 533139 . - 0 ID=cds476;Parent=gene507;Dbxref=Genbank:WP_000811566.1;Name=WP_000811566.1;gbkey=CDS;product=DUF1471 domain-containing protein;protein_id=WP_000811566.1;transl_table=11 NZ_CP010443.1 RefSeq gene 533288 533617 . - . ID=gene508;Name=SH04_RS02545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02545;old_locus_tag=SH04_02540 NZ_CP010443.1 Protein Homology CDS 533288 533617 . - 0 ID=cds477;Parent=gene508;Dbxref=Genbank:WP_000254633.1;Name=WP_000254633.1;Note=in Escherichia coli%2C mutation of this gene affects biofilm maturation%2C stress response%2C and motility;gbkey=CDS;product=lipoprotein BsmA;protein_id=WP_000254633.1;transl_table=11 NZ_CP010443.1 RefSeq gene 533799 534548 . + . ID=gene509;Name=SH04_RS02550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02550;old_locus_tag=SH04_02545 NZ_CP010443.1 Protein Homology CDS 533799 534548 . + 0 ID=cds478;Parent=gene509;Dbxref=Genbank:WP_000569707.1;Name=WP_000569707.1;Note=YjfP%3B esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro%3B unknown function and substrate in vivo;gbkey=CDS;product=esterase;protein_id=WP_000569707.1;transl_table=11 NZ_CP010443.1 RefSeq gene 534545 535300 . - . ID=gene510;Name=SH04_RS02555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02555;old_locus_tag=SH04_02550 NZ_CP010443.1 Protein Homology CDS 534545 535300 . - 0 ID=cds479;Parent=gene510;Dbxref=Genbank:WP_000133631.1;Name=WP_000133631.1;Note=negative regulator of ulaG and ulaABCDEF;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000133631.1;transl_table=11 NZ_CP010443.1 RefSeq gene 535408 536472 . - . ID=gene511;Name=SH04_RS02560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02560;old_locus_tag=SH04_02555 NZ_CP010443.1 Protein Homology CDS 535408 536472 . - 0 ID=cds480;Parent=gene511;Dbxref=Genbank:WP_001295191.1;Name=WP_001295191.1;gbkey=CDS;product=L-ascorbate-6-phosphate lactonase UlaG;protein_id=WP_001295191.1;transl_table=11 NZ_CP010443.1 RefSeq gene 536827 538224 . + . ID=gene512;Name=SH04_RS02565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02565;old_locus_tag=SH04_02560 NZ_CP010443.1 Protein Homology CDS 536827 538224 . + 0 ID=cds481;Parent=gene512;Dbxref=Genbank:WP_001350568.1;Name=WP_001350568.1;gbkey=CDS;product=ascorbate-specific permease IIC component UlaA;protein_id=WP_001350568.1;transl_table=11 NZ_CP010443.1 RefSeq gene 538240 538545 . + . ID=gene513;Name=SH04_RS02570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02570;old_locus_tag=SH04_02565 NZ_CP010443.1 Protein Homology CDS 538240 538545 . + 0 ID=cds482;Parent=gene513;Dbxref=Genbank:WP_000218362.1;Name=WP_000218362.1;Note=involved in the phosphorylation and transport of sugars across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=ascorbate-specific phosphotransferase enzyme IIB component;protein_id=WP_000218362.1;transl_table=11 NZ_CP010443.1 RefSeq gene 538555 539019 . + . ID=gene514;Name=SH04_RS02575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02575;old_locus_tag=SH04_02570 NZ_CP010443.1 Protein Homology CDS 538555 539019 . + 0 ID=cds483;Parent=gene514;Dbxref=Genbank:WP_000776517.1;Name=WP_000776517.1;Note=involved in the phosphorylation and transport of sugars across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=ascorbate-specific phosphotransferase enzyme IIA component;protein_id=WP_000776517.1;transl_table=11 NZ_CP010443.1 RefSeq gene 539033 539683 . + . ID=gene515;Name=ulaD;gbkey=Gene;gene=ulaD;gene_biotype=protein_coding;locus_tag=SH04_RS02580;old_locus_tag=SH04_02575 NZ_CP010443.1 Protein Homology CDS 539033 539683 . + 0 ID=cds484;Parent=gene515;Dbxref=Genbank:WP_000056749.1;Name=WP_000056749.1;Note=catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization;gbkey=CDS;gene=ulaD;product=3-keto-L-gulonate-6-phosphate decarboxylase ulaD;protein_id=WP_000056749.1;transl_table=11 NZ_CP010443.1 RefSeq gene 539693 540547 . + . ID=gene516;Name=SH04_RS02585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02585;old_locus_tag=SH04_02580 NZ_CP010443.1 Protein Homology CDS 539693 540547 . + 0 ID=cds485;Parent=gene516;Dbxref=Genbank:WP_000949502.1;Name=WP_000949502.1;gbkey=CDS;product=L-ribulose-5-phosphate 3-epimerase UlaE;protein_id=WP_000949502.1;transl_table=11 NZ_CP010443.1 RefSeq gene 540547 541233 . + . ID=gene517;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=SH04_RS02590;old_locus_tag=SH04_02585 NZ_CP010443.1 Protein Homology CDS 540547 541233 . + 0 ID=cds486;Parent=gene517;Dbxref=Genbank:WP_001170847.1;Name=WP_001170847.1;Note=catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate%3B links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source;gbkey=CDS;gene=araD;product=L-ribulose-5-phosphate 4-epimerase UlaF;protein_id=WP_001170847.1;transl_table=11 NZ_CP010443.1 RefSeq gene 541363 541638 . - . ID=gene518;Name=SH04_RS02595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02595;old_locus_tag=SH04_02590 NZ_CP010443.1 Protein Homology CDS 541363 541638 . - 0 ID=cds487;Parent=gene518;Dbxref=Genbank:WP_000492914.1;Name=WP_000492914.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000492914.1;transl_table=11 NZ_CP010443.1 RefSeq gene 541722 541841 . + . ID=gene519;Name=SH04_RS02600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02600;old_locus_tag=SH04_02595 NZ_CP010443.1 Protein Homology CDS 541722 541841 . + 0 ID=cds488;Parent=gene519;Dbxref=Genbank:WP_032230940.1;Name=WP_032230940.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032230940.1;transl_table=11 NZ_CP010443.1 RefSeq gene 541965 542360 . + . ID=gene520;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=SH04_RS02605;old_locus_tag=SH04_02600 NZ_CP010443.1 Protein Homology CDS 541965 542360 . + 0 ID=cds489;Parent=gene520;Dbxref=Genbank:WP_001216676.1;Name=WP_001216676.1;Note=binds cooperatively with S18 to the S15-16S complex%2C allowing platform assembly to continue with S11 and S21;gbkey=CDS;gene=rpsF;product=30S ribosomal protein S6;protein_id=WP_001216676.1;transl_table=11 NZ_CP010443.1 RefSeq gene 542367 542681 . + . ID=gene521;Name=SH04_RS02610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02610;old_locus_tag=SH04_02605 NZ_CP010443.1 Protein Homology CDS 542367 542681 . + 0 ID=cds490;Parent=gene521;Dbxref=Genbank:WP_001315977.1;Name=WP_001315977.1;Note=binds single-stranded DNA at the primosome assembly site;gbkey=CDS;product=primosomal replication protein n;protein_id=WP_001315977.1;transl_table=11 NZ_CP010443.1 RefSeq gene 542686 542913 . + . ID=gene522;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=SH04_RS02615;old_locus_tag=SH04_02610 NZ_CP010443.1 Protein Homology CDS 542686 542913 . + 0 ID=cds491;Parent=gene522;Dbxref=Genbank:WP_000135199.1;Name=WP_000135199.1;Note=binds as a heterodimer with protein S6 to the central domain of the 16S rRNA%3B helps stabilize the platform of the 30S subunit;gbkey=CDS;gene=rpsR;product=30S ribosomal protein S18;protein_id=WP_000135199.1;transl_table=11 NZ_CP010443.1 RefSeq gene 542955 543404 . + . ID=gene523;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=SH04_RS02620;old_locus_tag=SH04_02615 NZ_CP010443.1 Protein Homology CDS 542955 543404 . + 0 ID=cds492;Parent=gene523;Dbxref=Genbank:WP_001196062.1;Name=WP_001196062.1;Note=in Escherichia coli this protein is wrapped around the base of the L1 stalk;gbkey=CDS;gene=rplI;product=50S ribosomal protein L9;protein_id=WP_001196062.1;transl_table=11 NZ_CP010443.1 RefSeq gene 543475 544269 . - . ID=gene524;Name=SH04_RS02625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02625;old_locus_tag=SH04_02620 NZ_CP010443.1 Protein Homology CDS 543475 544269 . - 0 ID=cds493;Parent=gene524;Dbxref=Genbank:WP_000174714.1;Name=WP_000174714.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000174714.1;transl_table=11 NZ_CP010443.1 RefSeq gene 544616 544942 . + . ID=gene525;Name=SH04_RS02630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02630;old_locus_tag=SH04_02625 NZ_CP010443.1 Protein Homology CDS 544616 544942 . + 0 ID=cds494;Parent=gene525;Dbxref=Genbank:WP_000555422.1;Name=WP_000555422.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000555422.1;transl_table=11 NZ_CP010443.1 RefSeq gene 544926 545564 . - . ID=gene526;Name=SH04_RS02635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02635;old_locus_tag=SH04_02630 NZ_CP010443.1 Protein Homology CDS 544926 545564 . - 0 ID=cds495;Parent=gene526;Dbxref=Genbank:WP_001119478.1;Name=WP_001119478.1;gbkey=CDS;product=OapA family protein;protein_id=WP_001119478.1;transl_table=11 NZ_CP010443.1 RefSeq gene 545782 546402 . + . ID=gene527;Name=SH04_RS02640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02640;old_locus_tag=SH04_02635 NZ_CP010443.1 Protein Homology CDS 545782 546402 . + 0 ID=cds496;Parent=gene527;Dbxref=Genbank:WP_000211225.1;Name=WP_000211225.1;Note=FKBP-type%3B rotamase%3B catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides;gbkey=CDS;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000211225.1;transl_table=11 NZ_CP010443.1 RefSeq gene 546711 548123 . + . ID=gene528;Name=SH04_RS02645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02645;old_locus_tag=SH04_02640 NZ_CP010443.1 Protein Homology CDS 546711 548123 . + 0 ID=cds497;Parent=gene528;Dbxref=Genbank:WP_000228346.1;Name=WP_000228346.1;gbkey=CDS;product=D-serine/D-alanine/glycine transporter;protein_id=WP_000228346.1;transl_table=11 NZ_CP010443.1 RefSeq gene 548168 548830 . - . ID=gene529;Name=SH04_RS02650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02650;old_locus_tag=SH04_02645 NZ_CP010443.1 Protein Homology CDS 548168 548830 . - 0 ID=cds498;Parent=gene529;Dbxref=Genbank:WP_000331456.1;Name=WP_000331456.1;Note=Involved in anaerobic NO protection and iron metabolism;gbkey=CDS;product=iron-sulfur cluster repair protein YtfE;protein_id=WP_000331456.1;transl_table=11 NZ_CP010443.1 RefSeq gene 548938 549903 . - . ID=gene530;Name=SH04_RS02655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02655;old_locus_tag=SH04_02650 NZ_CP010443.1 Protein Homology CDS 548938 549903 . - 0 ID=cds499;Parent=gene530;Dbxref=Genbank:WP_001350569.1;Name=WP_001350569.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001350569.1;transl_table=11 NZ_CP010443.1 RefSeq gene 550011 550871 . - . ID=gene531;Name=SH04_RS02660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02660;old_locus_tag=SH04_02655 NZ_CP010443.1 Protein Homology CDS 550011 550871 . - 0 ID=cds500;Parent=gene531;Dbxref=Genbank:WP_000560561.1;Name=WP_000560561.1;gbkey=CDS;product=quinone oxidoreductase 2;protein_id=WP_000560561.1;transl_table=11 NZ_CP010443.1 RefSeq gene 550870 551340 . + . ID=gene532;Name=SH04_RS02665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02665;old_locus_tag=SH04_02660 NZ_CP010443.1 Protein Homology CDS 550870 551340 . + 0 ID=cds501;Parent=gene532;Dbxref=Genbank:WP_001307543.1;Name=WP_001307543.1;gbkey=CDS;product=HxlR family transcriptional regulator;protein_id=WP_001307543.1;transl_table=11 NZ_CP010443.1 RefSeq gene 551469 553412 . - . ID=gene533;Name=cpdB;gbkey=Gene;gene=cpdB;gene_biotype=protein_coding;locus_tag=SH04_RS02670;old_locus_tag=SH04_02665 NZ_CP010443.1 Protein Homology CDS 551469 553412 . - 0 ID=cds502;Parent=gene533;Dbxref=Genbank:WP_000589431.1;Name=WP_000589431.1;Note=periplasmic enzyme%3B functions during ribonucleic acid degradation%3B 2'%2C3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate;gbkey=CDS;gene=cpdB;product=2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;protein_id=WP_000589431.1;transl_table=11 NZ_CP010443.1 RefSeq gene 553602 554342 . + . ID=gene534;Name=SH04_RS02675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02675;old_locus_tag=SH04_02670 NZ_CP010443.1 Protein Homology CDS 553602 554342 . + 0 ID=cds503;Parent=gene534;Dbxref=Genbank:WP_000886919.1;Name=WP_000886919.1;Note=catalyzes the formation of AMP from adenosine-3'%2C5'-bisphosphate;gbkey=CDS;product=3'(2')%2C5'-bisphosphate nucleotidase CysQ;protein_id=WP_000886919.1;transl_table=11 NZ_CP010443.1 RefSeq gene 554554 555492 . + . ID=gene535;Name=SH04_RS02680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02680;old_locus_tag=SH04_02675 NZ_CP010443.1 Protein Homology CDS 554554 555492 . + 0 ID=cds504;Parent=gene535;Dbxref=Genbank:WP_000937655.1;Name=WP_000937655.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000937655.1;transl_table=11 NZ_CP010443.1 RefSeq gene 555555 556109 . - . ID=gene536;Name=SH04_RS02685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02685;old_locus_tag=SH04_02680 NZ_CP010443.1 Protein Homology CDS 555555 556109 . - 0 ID=cds505;Parent=gene536;Dbxref=Genbank:WP_000175279.1;Name=WP_000175279.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000175279.1;transl_table=11 NZ_CP010443.1 RefSeq gene 556434 556640 . + . ID=gene537;Name=SH04_RS02690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02690;old_locus_tag=SH04_02685 NZ_CP010443.1 Protein Homology CDS 556434 556640 . + 0 ID=cds506;Parent=gene537;Dbxref=Genbank:WP_000689228.1;Name=WP_000689228.1;gbkey=CDS;product=DUF1107 domain-containing protein;protein_id=WP_000689228.1;transl_table=11 NZ_CP010443.1 RefSeq gene 556719 558062 . - . ID=gene538;Name=SH04_RS02695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02695;old_locus_tag=SH04_02690 NZ_CP010443.1 Protein Homology CDS 556719 558062 . - 0 ID=cds507;Parent=gene538;Dbxref=Genbank:WP_000935036.1;Name=WP_000935036.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000935036.1;transl_table=11 NZ_CP010443.1 RefSeq gene 558385 559023 . - . ID=gene539;Name=SH04_RS02700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02700;old_locus_tag=SH04_02695 NZ_CP010443.1 Protein Homology CDS 558385 559023 . - 0 ID=cds508;Parent=gene539;Dbxref=Genbank:WP_001295196.1;Name=WP_001295196.1;Note=this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form%3B provides protection against oxidative stress;gbkey=CDS;product=peptide methionine sulfoxide reductase MsrA;protein_id=WP_001295196.1;transl_table=11 NZ_CP010443.1 RefSeq gene 559131 559259 . + . ID=gene540;Name=SH04_RS02705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02705;old_locus_tag=SH04_02700 NZ_CP010443.1 Protein Homology CDS 559131 559259 . + 0 ID=cds509;Parent=gene540;Dbxref=Genbank:WP_001296688.1;Name=WP_001296688.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296688.1;transl_table=11 NZ_CP010443.1 RefSeq gene 559229 560962 . + . ID=gene541;Name=SH04_RS02710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02710;old_locus_tag=SH04_02705 NZ_CP010443.1 Protein Homology CDS 559229 560962 . + 0 ID=cds510;Parent=gene541;Dbxref=Genbank:WP_001269327.1;Name=WP_001269327.1;gbkey=CDS;product=translocation and assembly module TamA;protein_id=WP_001269327.1;transl_table=11 NZ_CP010443.1 RefSeq gene 560959 564738 . + . ID=gene542;Name=SH04_RS02715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02715;old_locus_tag=SH04_02710 NZ_CP010443.1 Protein Homology CDS 560959 564738 . + 0 ID=cds511;Parent=gene542;Dbxref=Genbank:WP_000060911.1;Name=WP_000060911.1;gbkey=CDS;product=translocation and assembly module TamB;protein_id=WP_000060911.1;transl_table=11 NZ_CP010443.1 RefSeq gene 564741 565082 . + . ID=gene543;Name=SH04_RS02720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02720;old_locus_tag=SH04_02715 NZ_CP010443.1 Protein Homology CDS 564741 565082 . + 0 ID=cds512;Parent=gene543;Dbxref=Genbank:WP_001219160.1;Name=WP_001219160.1;gbkey=CDS;product=gamma-glutamylcyclotransferase YtfP;protein_id=WP_001219160.1;transl_table=11 NZ_CP010443.1 RefSeq gene 565294 565545 . + . ID=gene544;Name=SH04_RS02725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02725;old_locus_tag=SH04_02720 NZ_CP010443.1 Protein Homology CDS 565294 565545 . + 0 ID=cds513;Parent=gene544;Dbxref=Genbank:WP_001223208.1;Name=WP_001223208.1;Note=part of the toxin-antitoxin ChpB-ChpS system;gbkey=CDS;product=antitoxin ChpS;protein_id=WP_001223208.1;transl_table=11 NZ_CP010443.1 RefSeq gene 565539 565889 . + . ID=gene545;Name=SH04_RS02730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02730;old_locus_tag=SH04_02725 NZ_CP010443.1 Protein Homology CDS 565539 565889 . + 0 ID=cds514;Parent=gene545;Dbxref=Genbank:WP_000239577.1;Name=WP_000239577.1;Note=toxin of the ChpB-ChpS toxin-antitoxin system;gbkey=CDS;product=mRNA interferase ChpB;protein_id=WP_000239577.1;transl_table=11 NZ_CP010443.1 RefSeq gene 565969 566499 . - . ID=gene546;Name=SH04_RS02735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02735;old_locus_tag=SH04_02730 NZ_CP010443.1 Protein Homology CDS 565969 566499 . - 0 ID=cds515;Parent=gene546;Dbxref=Genbank:WP_038432732.1;Name=WP_038432732.1;Note=catalyzes the hydrolysis of pyrophosphate to phosphate;gbkey=CDS;product=inorganic pyrophosphatase;protein_id=WP_038432732.1;transl_table=11 NZ_CP010443.1 RefSeq gene 566809 567765 . + . ID=gene547;Name=SH04_RS02740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02740;old_locus_tag=SH04_02735 NZ_CP010443.1 Protein Homology CDS 566809 567765 . + 0 ID=cds516;Parent=gene547;Dbxref=Genbank:WP_000265913.1;Name=WP_000265913.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_000265913.1;transl_table=11 NZ_CP010443.1 RefSeq gene 567905 569407 . + . ID=gene548;Name=SH04_RS02745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02745;old_locus_tag=SH04_02740 NZ_CP010443.1 Protein Homology CDS 567905 569407 . + 0 ID=cds517;Parent=gene548;Dbxref=Genbank:WP_000205805.1;Name=WP_000205805.1;gbkey=CDS;product=sugar ABC transporter ATPase;protein_id=WP_000205805.1;transl_table=11 NZ_CP010443.1 RefSeq gene 569421 570443 . + . ID=gene549;Name=SH04_RS02750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02750;old_locus_tag=SH04_02745 NZ_CP010443.1 Protein Homology CDS 569421 570443 . + 0 ID=cds518;Parent=gene549;Dbxref=Genbank:WP_001313531.1;Name=WP_001313531.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_001313531.1;transl_table=11 NZ_CP010443.1 RefSeq gene 570430 571425 . + . ID=gene550;Name=SH04_RS02755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02755;old_locus_tag=SH04_02750 NZ_CP010443.1 Protein Homology CDS 570430 571425 . + 0 ID=cds519;Parent=gene550;Dbxref=Genbank:WP_000596014.1;Name=WP_000596014.1;Note=membrane component of a putative sugar ABC transporter system;gbkey=CDS;product=ABC transporter permease;protein_id=WP_000596014.1;transl_table=11 NZ_CP010443.1 RefSeq gene 571458 572456 . - . ID=gene551;Name=SH04_RS02760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02760;old_locus_tag=SH04_02755 NZ_CP010443.1 Protein Homology CDS 571458 572456 . - 0 ID=cds520;Parent=gene551;Dbxref=Genbank:WP_000853753.1;Name=WP_000853753.1;Note=catalyzes the formation of D-fructose 6-phosphate from fructose-1%2C6-bisphosphate;gbkey=CDS;product=fructose 1%2C6-bisphosphatase;protein_id=WP_000853753.1;transl_table=11 NZ_CP010443.1 RefSeq gene 572632 574005 . + . ID=gene552;Name=SH04_RS02765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02765;old_locus_tag=SH04_02760 NZ_CP010443.1 Protein Homology CDS 572632 574005 . + 0 ID=cds521;Parent=gene552;Dbxref=Genbank:WP_001219813.1;Name=WP_001219813.1;Note=ligates L-alanyl-gamma-D-glutamyl-meso-diaminopimelate to UDP-N-acetylmuramic acid for reincorporation into peptidoglycan;gbkey=CDS;product=UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2%2C6-diaminoheptandioate ligase;protein_id=WP_001219813.1;transl_table=11 NZ_CP010443.1 RefSeq gene 574161 574712 . - . ID=gene553;Name=SH04_RS02770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02770;old_locus_tag=SH04_02765 NZ_CP010443.1 Protein Homology CDS 574161 574712 . - 0 ID=cds522;Parent=gene553;Dbxref=Genbank:WP_000166270.1;Name=WP_000166270.1;gbkey=CDS;product=ribosome-associated UPF0307 family protein;protein_id=WP_000166270.1;transl_table=11 NZ_CP010443.1 RefSeq gene 574806 576158 . + . ID=gene554;Name=pmbA;gbkey=Gene;gene=pmbA;gene_biotype=protein_coding;gene_synonym=tldE;locus_tag=SH04_RS02775;old_locus_tag=SH04_02770 NZ_CP010443.1 Protein Homology CDS 574806 576158 . + 0 ID=cds523;Parent=gene554;Dbxref=Genbank:WP_001162171.1;Name=WP_001162171.1;Note=protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD;gbkey=CDS;gene=pmbA;product=metalloprotease PmbA;protein_id=WP_001162171.1;transl_table=11 NZ_CP010443.1 RefSeq gene 576337 576702 . + . ID=gene555;Name=SH04_RS02780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02780;old_locus_tag=SH04_02775 NZ_CP010443.1 Protein Homology CDS 576337 576702 . + 0 ID=cds524;Parent=gene555;Dbxref=Genbank:WP_023649327.1;Name=WP_023649327.1;Note=electron transport protein;gbkey=CDS;product=cytochrome B562;protein_id=WP_023649327.1;transl_table=11 NZ_CP010443.1 RefSeq gene 576747 577211 . - . ID=gene556;Name=SH04_RS02785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02785;old_locus_tag=SH04_02780 NZ_CP010443.1 Protein Homology CDS 576747 577211 . - 0 ID=cds525;Parent=gene556;Dbxref=Genbank:WP_001106233.1;Name=WP_001106233.1;Note=activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions;gbkey=CDS;product=anaerobic ribonucleoside-triphosphate reductase-activating protein;protein_id=WP_001106233.1;transl_table=11 NZ_CP010443.1 RefSeq gene 577369 579507 . - . ID=gene557;Name=SH04_RS02790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02790;old_locus_tag=SH04_02785 NZ_CP010443.1 Protein Homology CDS 577369 579507 . - 0 ID=cds526;Parent=gene557;Dbxref=Genbank:WP_000187778.1;Name=WP_000187778.1;Note=Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates;gbkey=CDS;product=anaerobic ribonucleoside-triphosphate reductase;protein_id=WP_000187778.1;transl_table=11 NZ_CP010443.1 RefSeq gene 579901 581556 . - . ID=gene558;Name=SH04_RS02795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02795;old_locus_tag=SH04_02790 NZ_CP010443.1 Protein Homology CDS 579901 581556 . - 0 ID=cds527;Parent=gene558;Dbxref=Genbank:WP_001336303.1;Name=WP_001336303.1;gbkey=CDS;product=trehalose-6-phosphate hydrolase;protein_id=WP_001336303.1;transl_table=11 NZ_CP010443.1 RefSeq gene 581606 583024 . - . ID=gene559;Name=SH04_RS02800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02800;old_locus_tag=SH04_02795 NZ_CP010443.1 Protein Homology CDS 581606 583024 . - 0 ID=cds528;Parent=gene559;Dbxref=Genbank:WP_000036104.1;Name=WP_000036104.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS maltose transporter subunit IIBC;protein_id=WP_000036104.1;transl_table=11 NZ_CP010443.1 RefSeq gene 583146 584093 . - . ID=gene560;Name=treR;gbkey=Gene;gene=treR;gene_biotype=protein_coding;locus_tag=SH04_RS02805;old_locus_tag=SH04_02800 NZ_CP010443.1 Protein Homology CDS 583146 584093 . - 0 ID=cds529;Parent=gene560;Dbxref=Genbank:WP_038432735.1;Name=WP_038432735.1;Note=regulates genes involved in trehalose metabolism%3B binds the intermediate trehalose-6-phosphate%3B binds a dimer%3B regulates treBC operon;gbkey=CDS;gene=treR;product=trehalose repressor;protein_id=WP_038432735.1;transl_table=11 NZ_CP010443.1 RefSeq gene 584472 587168 . + . ID=gene561;Name=SH04_RS02810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02810;old_locus_tag=SH04_02805 NZ_CP010443.1 Protein Homology CDS 584472 587168 . + 0 ID=cds530;Parent=gene561;Dbxref=Genbank:WP_000471889.1;Name=WP_000471889.1;Note=P-type%3B involved in magnesium transport into the cytoplasm;gbkey=CDS;product=magnesium-translocating P-type ATPase;protein_id=WP_000471889.1;transl_table=11 NZ_CP010443.1 RefSeq gene 587374 587760 . - . ID=gene562;Name=SH04_RS02815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02815;old_locus_tag=SH04_02810 NZ_CP010443.1 Protein Homology CDS 587374 587760 . - 0 ID=cds531;Parent=gene562;Dbxref=Genbank:WP_000047539.1;Name=WP_000047539.1;Note=has endoribonuclease activity on mRNA;gbkey=CDS;product=reactive intermediate/imine deaminase;protein_id=WP_000047539.1;transl_table=11 NZ_CP010443.1 RefSeq gene 587833 588294 . - . ID=gene563;Name=SH04_RS02820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02820;old_locus_tag=SH04_02815 NZ_CP010443.1 Protein Homology CDS 587833 588294 . - 0 ID=cds532;Parent=gene563;Dbxref=Genbank:WP_000148581.1;Name=WP_000148581.1;Note=involved in the allosteric regulation of aspartate carbamoyltransferase;gbkey=CDS;product=aspartate carbamoyltransferase regulatory chain;protein_id=WP_000148581.1;transl_table=11 NZ_CP010443.1 RefSeq gene 588307 589242 . - . ID=gene564;Name=SH04_RS02825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02825;old_locus_tag=SH04_02820 NZ_CP010443.1 Protein Homology CDS 588307 589242 . - 0 ID=cds533;Parent=gene564;Dbxref=Genbank:WP_000013046.1;Name=WP_000013046.1;gbkey=CDS;product=aspartate carbamoyltransferase catalytic subunit;protein_id=WP_000013046.1;transl_table=11 NZ_CP010443.1 RefSeq gene 589246 589380 . - . ID=gene565;Name=SH04_RS02830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02830;old_locus_tag=SH04_02825 NZ_CP010443.1 Protein Homology CDS 589246 589380 . - 0 ID=cds534;Parent=gene565;Dbxref=Genbank:WP_001296693.1;Name=WP_001296693.1;gbkey=CDS;product=pyrBI operon leader peptide;protein_id=WP_001296693.1;transl_table=11 NZ_CP010443.1 RefSeq gene 589360 589692 . + . ID=gene566;Name=SH04_RS02835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02835;old_locus_tag=SH04_02830 NZ_CP010443.1 Protein Homology CDS 589360 589692 . + 0 ID=cds535;Parent=gene566;Dbxref=Genbank:WP_001701421.1;Name=WP_001701421.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001701421.1;transl_table=11 NZ_CP010443.1 RefSeq gene 589661 590056 . - . ID=gene567;Name=SH04_RS02840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02840;old_locus_tag=SH04_02835 NZ_CP010443.1 Protein Homology CDS 589661 590056 . - 0 ID=cds536;Parent=gene567;Dbxref=Genbank:WP_000230281.1;Name=WP_000230281.1;gbkey=CDS;product=endoribonuclease L-PSP;protein_id=WP_000230281.1;transl_table=11 NZ_CP010443.1 RefSeq gene 590187 590900 . - . ID=gene568;Name=SH04_RS02845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02845;old_locus_tag=SH04_02840 NZ_CP010443.1 Protein Homology CDS 590187 590900 . - 0 ID=cds537;Parent=gene568;Dbxref=Genbank:WP_000500731.1;Name=WP_000500731.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000500731.1;transl_table=11 NZ_CP010443.1 RefSeq gene 590971 591564 . + . ID=gene569;Name=SH04_RS02850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02850;old_locus_tag=SH04_02845 NZ_CP010443.1 Protein Homology CDS 590971 591564 . + 0 ID=cds538;Parent=gene569;Dbxref=Genbank:WP_000256658.1;Name=WP_000256658.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000256658.1;transl_table=11 NZ_CP010443.1 RefSeq gene 591709 592161 . + . ID=gene570;Name=SH04_RS02855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02855;old_locus_tag=SH04_02850 NZ_CP010443.1 Protein Homology CDS 591709 592161 . + 0 ID=cds539;Parent=gene570;Dbxref=Genbank:WP_000583469.1;Name=WP_000583469.1;gbkey=CDS;product=DUF386 domain-containing protein;protein_id=WP_000583469.1;transl_table=11 NZ_CP010443.1 RefSeq gene 592284 594098 . + . ID=gene571;Name=SH04_RS02860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02860;old_locus_tag=SH04_02855 NZ_CP010443.1 Protein Homology CDS 592284 594098 . + 0 ID=cds540;Parent=gene571;Dbxref=Genbank:WP_000036434.1;Name=WP_000036434.1;gbkey=CDS;product=SopA-central-domain-like hexapeptide repeat protein;protein_id=WP_000036434.1;transl_table=11 NZ_CP010443.1 RefSeq gene 594154 595158 . - . ID=gene572;Name=SH04_RS02865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02865;old_locus_tag=SH04_02860 NZ_CP010443.1 Protein Homology CDS 594154 595158 . - 0 ID=cds541;Parent=gene572;Dbxref=Genbank:WP_000012931.1;Name=WP_000012931.1;Note=catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway;gbkey=CDS;product=ornithine carbamoyltransferase chain I;protein_id=WP_000012931.1;transl_table=11 NZ_CP010443.1 RefSeq gene 595320 595736 . + . ID=gene573;Name=SH04_RS02870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02870;old_locus_tag=SH04_02865 NZ_CP010443.1 Protein Homology CDS 595320 595736 . + 0 ID=cds542;Parent=gene573;Dbxref=Genbank:WP_000002953.1;Name=WP_000002953.1;gbkey=CDS;product=regulator of ribonuclease activity B;protein_id=WP_000002953.1;transl_table=11 NZ_CP010443.1 RefSeq gene 595881 596384 . - . ID=gene574;Name=SH04_RS02875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02875;old_locus_tag=SH04_02870 NZ_CP010443.1 Protein Homology CDS 595881 596384 . - 0 ID=cds543;Parent=gene574;Dbxref=Genbank:WP_001059402.1;Name=WP_001059402.1;gbkey=CDS;product=GNAT family acetyltransferase;protein_id=WP_001059402.1;transl_table=11 NZ_CP010443.1 RefSeq gene 596577 597773 . + . ID=gene575;Name=SH04_RS02880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02880;old_locus_tag=SH04_02875 NZ_CP010443.1 Protein Homology CDS 596577 597773 . + 0 ID=cds544;Parent=gene575;Dbxref=Genbank:WP_000079634.1;Name=WP_000079634.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000079634.1;transl_table=11 NZ_CP010443.1 RefSeq gene 597829 600684 . - . ID=gene576;Name=SH04_RS02885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02885;old_locus_tag=SH04_02880 NZ_CP010443.1 Protein Homology CDS 597829 600684 . - 0 ID=cds545;Parent=gene576;Dbxref=Genbank:WP_000416392.1;Name=WP_000416392.1;gbkey=CDS;product=valine--tRNA ligase;protein_id=WP_000416392.1;transl_table=11 NZ_CP010443.1 RefSeq gene 600684 601127 . - . ID=gene577;Name=SH04_RS02890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02890;old_locus_tag=SH04_02885 NZ_CP010443.1 Protein Homology CDS 600684 601127 . - 0 ID=cds546;Parent=gene577;Dbxref=Genbank:WP_000786400.1;Name=WP_000786400.1;Note=binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB;gbkey=CDS;product=DNA polymerase III subunit chi;protein_id=WP_000786400.1;transl_table=11 NZ_CP010443.1 RefSeq gene 601287 602798 . - . ID=gene578;Name=SH04_RS02895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02895;old_locus_tag=SH04_02890 NZ_CP010443.1 Protein Homology CDS 601287 602798 . - 0 ID=cds547;Parent=gene578;Dbxref=Genbank:WP_000397144.1;Name=WP_000397144.1;Note=catalyzes the removal of N-terminal amino acids preferably from various peptides%3B a cyteinylglycinase%2C transcription regulator and site-specific recombination factor;gbkey=CDS;product=cytosol aminopeptidase;protein_id=WP_000397144.1;transl_table=11 NZ_CP010443.1 RefSeq gene 603065 604165 . + . ID=gene579;Name=SH04_RS02900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02900;old_locus_tag=SH04_02895 NZ_CP010443.1 Protein Homology CDS 603065 604165 . + 0 ID=cds548;Parent=gene579;Dbxref=Genbank:WP_000584114.1;Name=WP_000584114.1;Note=with LptBGC is involved in lipopolysaccharide export;gbkey=CDS;product=LPS export ABC transporter permease LptF;protein_id=WP_000584114.1;transl_table=11 NZ_CP010443.1 RefSeq gene 604165 605247 . + . ID=gene580;Name=SH04_RS02905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02905;old_locus_tag=SH04_02900 NZ_CP010443.1 Protein Homology CDS 604165 605247 . + 0 ID=cds549;Parent=gene580;Dbxref=Genbank:WP_001295681.1;Name=WP_001295681.1;Note=with LptABCF is involved in the transport of lipopolysaccharides;gbkey=CDS;product=LPS export ABC transporter permease LptG;protein_id=WP_001295681.1;transl_table=11 NZ_CP010443.1 RefSeq gene 605408 606910 . - . ID=gene581;Name=SH04_RS02910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02910;old_locus_tag=SH04_02905 NZ_CP010443.1 Protein Homology CDS 605408 606910 . - 0 ID=cds550;Parent=gene581;Dbxref=Genbank:WP_001294573.1;Name=WP_001294573.1;gbkey=CDS;product=DUF853 domain-containing protein;protein_id=WP_001294573.1;transl_table=11 NZ_CP010443.1 RefSeq gene 606988 607986 . - . ID=gene582;Name=SH04_RS02915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02915;old_locus_tag=SH04_02910 NZ_CP010443.1 Protein Homology CDS 606988 607986 . - 0 ID=cds551;Parent=gene582;Dbxref=Genbank:WP_001309159.1;Name=WP_001309159.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001309159.1;transl_table=11 NZ_CP010443.1 RefSeq gene 608053 609372 . - . ID=gene583;Name=SH04_RS02920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02920;old_locus_tag=SH04_02915 NZ_CP010443.1 Protein Homology CDS 608053 609372 . - 0 ID=cds552;Parent=gene583;Dbxref=Genbank:WP_001128335.1;Name=WP_001128335.1;gbkey=CDS;product=gnt-II system L-idonate transporter;protein_id=WP_001128335.1;transl_table=11 NZ_CP010443.1 RefSeq gene 609434 610198 . - . ID=gene584;Name=SH04_RS02925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02925;old_locus_tag=SH04_02920 NZ_CP010443.1 Protein Homology CDS 609434 610198 . - 0 ID=cds553;Parent=gene584;Dbxref=Genbank:WP_000998695.1;Name=WP_000998695.1;Note=Involved in the nonphosphorylative%2C ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate;gbkey=CDS;product=gluconate 5-dehydrogenase;protein_id=WP_000998695.1;transl_table=11 NZ_CP010443.1 RefSeq gene 610222 611253 . - . ID=gene585;Name=SH04_RS02930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02930;old_locus_tag=SH04_02925 NZ_CP010443.1 Protein Homology CDS 610222 611253 . - 0 ID=cds554;Parent=gene585;Dbxref=Genbank:WP_001197411.1;Name=WP_001197411.1;Note=NAD-binding;gbkey=CDS;product=L-idonate 5-dehydrogenase (NAD(P)+);protein_id=WP_001197411.1;transl_table=11 NZ_CP010443.1 RefSeq gene 611470 612033 . + . ID=gene586;Name=idnK;gbkey=Gene;gene=idnK;gene_biotype=protein_coding;locus_tag=SH04_RS02935;old_locus_tag=SH04_02930 NZ_CP010443.1 Protein Homology CDS 611470 612033 . + 0 ID=cds555;Parent=gene586;Dbxref=Genbank:WP_000896738.1;Name=WP_000896738.1;gbkey=CDS;gene=idnK;product=thermosensitive gluconokinase;protein_id=WP_000896738.1;transl_table=11 NZ_CP010443.1 RefSeq gene 612037 613056 . - . ID=gene587;Name=SH04_RS02940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02940;old_locus_tag=SH04_02935 NZ_CP010443.1 Protein Homology CDS 612037 613056 . - 0 ID=cds556;Parent=gene587;Dbxref=Genbank:WP_001309160.1;Name=WP_001309160.1;gbkey=CDS;product=aldehyde reductase Ahr;protein_id=WP_001309160.1;transl_table=11 NZ_CP010443.1 RefSeq gene 613252 613336 . + . ID=gene588;Name=SH04_RS02945;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS02945;old_locus_tag=SH04_02940 NZ_CP010443.1 tRNAscan-SE tRNA 613252 613336 . + . ID=rna31;Parent=gene588;anticodon=(pos:613286..613288);gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 tRNAscan-SE exon 613252 613336 . + . ID=id45;Parent=rna31;anticodon=(pos:613286..613288);gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 RefSeq gene 613597 614787 . + . ID=gene589;Name=SH04_RS02950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02950;old_locus_tag=SH04_02945 NZ_CP010443.1 Protein Homology CDS 613597 614787 . + 0 ID=cds557;Parent=gene589;Dbxref=Genbank:WP_000550469.1;Name=WP_000550469.1;gbkey=CDS;product=integrase;protein_id=WP_000550469.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 615028 616359 . + . ID=id46;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 615073 615162 . - . ID=gene590;Name=SH04_RS02955;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS02955;partial=true;pseudo=true;start_range=.,615073 NZ_CP010443.1 Protein Homology CDS 615073 615162 . - 0 ID=cds558;Parent=gene590;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=nitrite extrusion protein 2;pseudo=true;start_range=.,615073;transl_table=11 NZ_CP010443.1 RefSeq gene 615119 615484 . + . ID=gene591;Name=SH04_RS02960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02960;old_locus_tag=SH04_02955 NZ_CP010443.1 Protein Homology CDS 615119 615484 . + 0 ID=cds559;Parent=gene591;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NZ_CP010443.1 RefSeq gene 615442 616347 . + . ID=gene592;Name=SH04_RS02965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02965;old_locus_tag=SH04_02960 NZ_CP010443.1 Protein Homology CDS 615442 616347 . + 0 ID=cds560;Parent=gene592;Dbxref=Genbank:WP_000376502.1;Name=WP_000376502.1;gbkey=CDS;product=integrase;protein_id=WP_000376502.1;transl_table=11 NZ_CP010443.1 RefSeq gene 616524 617638 . - . ID=gene593;Name=SH04_RS22850;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS22850;pseudo=true NZ_CP010443.1 Protein Homology CDS 616524 617638 . - 0 ID=cds561;Parent=gene593;exception=annotated by transcript or proteomic data;gbkey=CDS;product=phosphoethanolamine transferase YjgX;pseudo=true;transl_except=(pos:complement(616890..616892)%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 617905 618075 . + . ID=gene594;Name=SH04_RS02980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02980;old_locus_tag=SH04_02975 NZ_CP010443.1 Protein Homology CDS 617905 618075 . + 0 ID=cds562;Parent=gene594;Dbxref=Genbank:WP_015675048.1;Name=WP_015675048.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_015675048.1;transl_table=11 NZ_CP010443.1 RefSeq gene 618129 618350 . + . ID=gene595;Name=SH04_RS02985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02985;old_locus_tag=SH04_02980 NZ_CP010443.1 Protein Homology CDS 618129 618350 . + 0 ID=cds563;Parent=gene595;Dbxref=Genbank:WP_001321299.1;Name=WP_001321299.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001321299.1;transl_table=11 NZ_CP010443.1 RefSeq gene 618779 618922 . + . ID=gene596;Name=SH04_RS02990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02990;old_locus_tag=SH04_02985 NZ_CP010443.1 Protein Homology CDS 618779 618922 . + 0 ID=cds564;Parent=gene596;Dbxref=Genbank:WP_000050905.1;Name=WP_000050905.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000050905.1;transl_table=11 NZ_CP010443.1 RefSeq gene 618950 620278 . - . ID=gene597;Name=SH04_RS02995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS02995;old_locus_tag=SH04_02990 NZ_CP010443.1 Protein Homology CDS 618950 620278 . - 0 ID=cds565;Parent=gene597;Dbxref=Genbank:WP_000547191.1;Name=WP_000547191.1;gbkey=CDS;product=transposase;protein_id=WP_000547191.1;transl_table=11 NZ_CP010443.1 RefSeq gene 620905 622122 . + . ID=gene598;Name=SH04_RS03000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03000;old_locus_tag=SH04_02995 NZ_CP010443.1 Protein Homology CDS 620905 622122 . + 0 ID=cds566;Parent=gene598;Dbxref=Genbank:WP_000179691.1;Name=WP_000179691.1;gbkey=CDS;product=MFS transporter membrane protein;protein_id=WP_000179691.1;transl_table=11 NZ_CP010443.1 RefSeq gene 622134 623252 . + . ID=gene599;Name=SH04_RS03005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03005;old_locus_tag=SH04_03000 NZ_CP010443.1 Protein Homology CDS 622134 623252 . + 0 ID=cds567;Parent=gene599;Dbxref=Genbank:WP_000611568.1;Name=WP_000611568.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000611568.1;transl_table=11 NZ_CP010443.1 RefSeq gene 623473 623730 . - . ID=gene600;Name=SH04_RS03010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03010;old_locus_tag=SH04_03005 NZ_CP010443.1 Protein Homology CDS 623473 623730 . - 0 ID=cds568;Parent=gene600;Dbxref=Genbank:WP_000254999.1;Name=WP_000254999.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000254999.1;transl_table=11 NZ_CP010443.1 RefSeq gene 623753 623956 . + . ID=gene601;Name=SH04_RS03015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03015;old_locus_tag=SH04_03010 NZ_CP010443.1 Protein Homology CDS 623753 623956 . + 0 ID=cds569;Parent=gene601;Dbxref=Genbank:WP_000355616.1;Name=WP_000355616.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000355616.1;transl_table=11 NZ_CP010443.1 RefSeq gene 624008 624310 . + . ID=gene602;Name=SH04_RS03020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03020;old_locus_tag=SH04_03015 NZ_CP010443.1 Protein Homology CDS 624008 624310 . + 0 ID=cds570;Parent=gene602;Dbxref=Genbank:WP_032244723.1;Name=WP_032244723.1;gbkey=CDS;product=transposase;protein_id=WP_032244723.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 624305 625543 . + . ID=id47;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 624313 625464 . - . ID=gene603;Name=SH04_RS03025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03025;old_locus_tag=SH04_03020 NZ_CP010443.1 Protein Homology CDS 624313 625464 . - 0 ID=cds571;Parent=gene603;Dbxref=Genbank:WP_001254932.1;Name=WP_001254932.1;gbkey=CDS;product=transposase;protein_id=WP_001254932.1;transl_table=11 NZ_CP010443.1 RefSeq gene 625421 625789 . - . ID=gene604;Name=SH04_RS03030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03030;old_locus_tag=SH04_03025 NZ_CP010443.1 Protein Homology CDS 625421 625789 . - 0 ID=cds572;Parent=gene604;Dbxref=Genbank:WP_000088395.1;Name=WP_000088395.1;gbkey=CDS;product=transposase;protein_id=WP_000088395.1;transl_table=11 NZ_CP010443.1 RefSeq gene 625805 626640 . + . ID=gene605;Name=SH04_RS03035;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS03035;pseudo=true NZ_CP010443.1 Protein Homology CDS 625805 626640 . + 0 ID=cds573;Parent=gene605;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 626723 626980 . + . ID=gene606;Name=SH04_RS03040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03040;old_locus_tag=SH04_03035 NZ_CP010443.1 Protein Homology CDS 626723 626980 . + 0 ID=cds574;Parent=gene606;Dbxref=Genbank:WP_000177057.1;Name=WP_000177057.1;gbkey=CDS;product=transporter;protein_id=WP_000177057.1;transl_table=11 NZ_CP010443.1 RefSeq gene 627537 628304 . - . ID=gene607;Name=SH04_RS03045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03045;old_locus_tag=SH04_03040 NZ_CP010443.1 Protein Homology CDS 627537 628304 . - 0 ID=cds575;Parent=gene607;Dbxref=Genbank:WP_000175457.1;Name=WP_000175457.1;gbkey=CDS;product=Fe(3+) dicitrate transport ATP-binding protein FecE;protein_id=WP_000175457.1;transl_table=11 NZ_CP010443.1 RefSeq gene 628305 629261 . - . ID=gene608;Name=fecD;gbkey=Gene;gene=fecD;gene_biotype=protein_coding;locus_tag=SH04_RS03050;old_locus_tag=SH04_03045 NZ_CP010443.1 Protein Homology CDS 628305 629261 . - 0 ID=cds576;Parent=gene608;Dbxref=Genbank:WP_000684852.1;Name=WP_000684852.1;Note=Ferric citrate binds FecA and is transported across the outer membrane while transmits a signal across the cytoplasmic membrane protein FecR. FecR transmits a signal across the membrane and activates the cytoplasmic FecI that directs the RNA polymerase to express the fecABCDE operon (which encodes the ferric citrate outer membrane receptor and the ferric citrate ABC transporter)%2C as well as fecIR. FecD is one of two (along with FecC) integral membrane protein components of the iron dicitrate ABC transporter.;gbkey=CDS;gene=fecD;product=Fe(3+) dicitrate ABC transporter permease;protein_id=WP_000684852.1;transl_table=11 NZ_CP010443.1 RefSeq gene 629258 630256 . - . ID=gene609;Name=fecC;gbkey=Gene;gene=fecC;gene_biotype=protein_coding;locus_tag=SH04_RS03055;old_locus_tag=SH04_03050 NZ_CP010443.1 Protein Homology CDS 629258 630256 . - 0 ID=cds577;Parent=gene609;Dbxref=Genbank:WP_000125187.1;Name=WP_000125187.1;Note=part of the FecBCDE citrate-dependent iron (III) transport system;gbkey=CDS;gene=fecC;product=Fe(3+) dicitrate ABC transporter permease;protein_id=WP_000125187.1;transl_table=11 NZ_CP010443.1 RefSeq gene 630253 631155 . - . ID=gene610;Name=fecB;gbkey=Gene;gene=fecB;gene_biotype=protein_coding;locus_tag=SH04_RS03060;old_locus_tag=SH04_03055 NZ_CP010443.1 Protein Homology CDS 630253 631155 . - 0 ID=cds578;Parent=gene610;Dbxref=Genbank:WP_000879155.1;Name=WP_000879155.1;Note=part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+);gbkey=CDS;gene=fecB;product=Fe(3+) dicitrate-binding periplasmic protein;protein_id=WP_000879155.1;transl_table=11 NZ_CP010443.1 RefSeq gene 631200 633524 . - . ID=gene611;Name=SH04_RS03065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03065;old_locus_tag=SH04_03060 NZ_CP010443.1 Protein Homology CDS 631200 633524 . - 0 ID=cds579;Parent=gene611;Dbxref=Genbank:WP_000188283.1;Name=WP_000188283.1;gbkey=CDS;product=fe(3+) dicitrate transporter fecA;protein_id=WP_000188283.1;transl_table=11 NZ_CP010443.1 RefSeq gene 633611 634564 . - . ID=gene612;Name=SH04_RS03070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03070;old_locus_tag=SH04_03065 NZ_CP010443.1 Protein Homology CDS 633611 634564 . - 0 ID=cds580;Parent=gene612;Dbxref=Genbank:WP_001068910.1;Name=WP_001068910.1;Note=with FecA forms the FecAR signal transduction system%3B ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon;gbkey=CDS;product=protein FecR;protein_id=WP_001068910.1;transl_table=11 NZ_CP010443.1 RefSeq gene 634561 635082 . - . ID=gene613;Name=SH04_RS03075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03075;old_locus_tag=SH04_03070 NZ_CP010443.1 Protein Homology CDS 634561 635082 . - 0 ID=cds581;Parent=gene613;Dbxref=Genbank:WP_001283626.1;Name=WP_001283626.1;Note=Member of the extracytoplasmic function sigma factors which are active under specific conditions%3B binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription%3B this sigma factor regulates the genes for iron dicitrate transport;gbkey=CDS;product=RNA polymerase sigma factor FecI;protein_id=WP_001283626.1;transl_table=11 NZ_CP010443.1 RefSeq gene 635293 635493 . - . ID=gene614;Name=SH04_RS03080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03080;old_locus_tag=SH04_03075 NZ_CP010443.1 Protein Homology CDS 635293 635493 . - 0 ID=cds582;Parent=gene614;Dbxref=Genbank:WP_032142331.1;Name=WP_032142331.1;gbkey=CDS;product=transposase;protein_id=WP_032142331.1;transl_table=11 NZ_CP010443.1 RefSeq gene 635568 635861 . + . ID=gene615;Name=SH04_RS22855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22855 NZ_CP010443.1 Protein Homology CDS 635568 635861 . + 0 ID=cds583;Parent=gene615;Dbxref=Genbank:WP_000089811.1;Name=WP_000089811.1;gbkey=CDS;product=transposase;protein_id=WP_000089811.1;transl_table=11 NZ_CP010443.1 RefSeq gene 635862 636071 . + . ID=gene616;Name=SH04_RS03090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03090;old_locus_tag=SH04_03085 NZ_CP010443.1 Protein Homology CDS 635862 636071 . + 0 ID=cds584;Parent=gene616;Dbxref=Genbank:WP_000129482.1;Name=WP_000129482.1;gbkey=CDS;product=transposase;protein_id=WP_000129482.1;transl_table=11 NZ_CP010443.1 RefSeq gene 636185 637171 . - . ID=gene617;Name=SH04_RS03095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03095;old_locus_tag=SH04_03090 NZ_CP010443.1 Protein Homology CDS 636185 637171 . - 0 ID=cds585;Parent=gene617;Dbxref=Genbank:WP_000373366.1;Name=WP_000373366.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000373366.1;transl_table=11 NZ_CP010443.1 RefSeq gene 637271 637441 . - . ID=gene618;Name=SH04_RS03100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03100;old_locus_tag=SH04_03095 NZ_CP010443.1 Protein Homology CDS 637271 637441 . - 0 ID=cds586;Parent=gene618;Dbxref=Genbank:WP_001323213.1;Name=WP_001323213.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001323213.1;transl_table=11 NZ_CP010443.1 RefSeq gene 637518 638867 . - . ID=gene619;Name=SH04_RS03105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03105;old_locus_tag=SH04_03100 NZ_CP010443.1 Protein Homology CDS 637518 638867 . - 0 ID=cds587;Parent=gene619;Dbxref=Genbank:WP_001128363.1;Name=WP_001128363.1;gbkey=CDS;product=transporter;protein_id=WP_001128363.1;transl_table=11 NZ_CP010443.1 RefSeq gene 638974 640941 . - . ID=gene620;Name=SH04_RS03110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03110;old_locus_tag=SH04_03105 NZ_CP010443.1 Protein Homology CDS 638974 640941 . - 0 ID=cds588;Parent=gene620;Dbxref=Genbank:WP_000116326.1;Name=WP_000116326.1;gbkey=CDS;product=dehydratase;protein_id=WP_000116326.1;transl_table=11 NZ_CP010443.1 RefSeq gene 640952 641887 . - . ID=gene621;Name=SH04_RS03115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03115;old_locus_tag=SH04_03110 NZ_CP010443.1 Protein Homology CDS 640952 641887 . - 0 ID=cds589;Parent=gene621;Dbxref=Genbank:WP_000109145.1;Name=WP_000109145.1;gbkey=CDS;product=2-keto-3-deoxy-galactonate aldolase;protein_id=WP_000109145.1;transl_table=11 NZ_CP010443.1 RefSeq gene 641862 642650 . - . ID=gene622;Name=SH04_RS03120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03120;old_locus_tag=SH04_03115 NZ_CP010443.1 Protein Homology CDS 641862 642650 . - 0 ID=cds590;Parent=gene622;Dbxref=Genbank:WP_000251798.1;Name=WP_000251798.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000251798.1;transl_table=11 NZ_CP010443.1 RefSeq gene 642953 643735 . - . ID=gene623;Name=SH04_RS03125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03125;old_locus_tag=SH04_03120 NZ_CP010443.1 Protein Homology CDS 642953 643735 . - 0 ID=cds591;Parent=gene623;Dbxref=Genbank:WP_000082780.1;Name=WP_000082780.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000082780.1;transl_table=11 NZ_CP010443.1 RefSeq gene 643752 644384 . - . ID=gene624;Name=SH04_RS03130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03130;old_locus_tag=SH04_03125 NZ_CP010443.1 Protein Homology CDS 643752 644384 . - 0 ID=cds592;Parent=gene624;Dbxref=Genbank:WP_000600622.1;Name=WP_000600622.1;gbkey=CDS;product=protein SgcE;protein_id=WP_000600622.1;transl_table=11 NZ_CP010443.1 RefSeq gene 644396 644827 . - . ID=gene625;Name=SH04_RS03135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03135;old_locus_tag=SH04_03130 NZ_CP010443.1 Protein Homology CDS 644396 644827 . - 0 ID=cds593;Parent=gene625;Dbxref=Genbank:WP_000606406.1;Name=WP_000606406.1;gbkey=CDS;product=phosphotransferase enzyme IIA component;protein_id=WP_000606406.1;transl_table=11 NZ_CP010443.1 RefSeq gene 644958 645764 . - . ID=gene626;Name=SH04_RS03140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03140;old_locus_tag=SH04_03135 NZ_CP010443.1 Protein Homology CDS 644958 645764 . - 0 ID=cds594;Parent=gene626;Dbxref=Genbank:WP_000118626.1;Name=WP_000118626.1;gbkey=CDS;product=nucleoside triphosphatase;protein_id=WP_000118626.1;transl_table=11 NZ_CP010443.1 RefSeq gene 645777 647090 . - . ID=gene627;Name=SH04_RS03145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03145;old_locus_tag=SH04_03140 NZ_CP010443.1 Protein Homology CDS 645777 647090 . - 0 ID=cds595;Parent=gene627;Dbxref=Genbank:WP_000460843.1;Name=WP_000460843.1;gbkey=CDS;product=PTS system EIIC permease component;protein_id=WP_000460843.1;transl_table=11 NZ_CP010443.1 RefSeq gene 647102 647383 . - . ID=gene628;Name=SH04_RS03150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03150;old_locus_tag=SH04_03145 NZ_CP010443.1 Protein Homology CDS 647102 647383 . - 0 ID=cds596;Parent=gene628;Dbxref=Genbank:WP_024165496.1;Name=WP_024165496.1;gbkey=CDS;product=PTS sugar transporter subunit IIB;protein_id=WP_024165496.1;transl_table=11 NZ_CP010443.1 RefSeq gene 647377 648498 . - . ID=gene629;Name=SH04_RS03155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03155;old_locus_tag=SH04_03150 NZ_CP010443.1 Protein Homology CDS 647377 648498 . - 0 ID=cds597;Parent=gene629;Dbxref=Genbank:WP_000010829.1;Name=WP_000010829.1;gbkey=CDS;product=endoglucanase;protein_id=WP_000010829.1;transl_table=11 NZ_CP010443.1 RefSeq gene 649284 650030 . - . ID=gene630;Name=SH04_RS03160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03160;old_locus_tag=SH04_03155 NZ_CP010443.1 Protein Homology CDS 649284 650030 . - 0 ID=cds598;Parent=gene630;Dbxref=Genbank:WP_000354251.1;Name=WP_000354251.1;gbkey=CDS;product=methyltransferase;protein_id=WP_000354251.1;transl_table=11 NZ_CP010443.1 RefSeq gene 650086 650631 . - . ID=gene631;Name=SH04_RS03165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03165;old_locus_tag=SH04_03160 NZ_CP010443.1 Protein Homology CDS 650086 650631 . - 0 ID=cds599;Parent=gene631;Dbxref=Genbank:WP_001309181.1;Name=WP_001309181.1;gbkey=CDS;product=GNAT family acetyltransferase;protein_id=WP_001309181.1;transl_table=11 NZ_CP010443.1 RefSeq gene 650643 650900 . - . ID=gene632;Name=SH04_RS03170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03170;old_locus_tag=SH04_03165 NZ_CP010443.1 Protein Homology CDS 650643 650900 . - 0 ID=cds600;Parent=gene632;Dbxref=Genbank:WP_001054376.1;Name=WP_001054376.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001054376.1;transl_table=11 NZ_CP010443.1 RefSeq gene 651391 651522 . - . ID=gene633;Name=SH04_RS03175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03175;old_locus_tag=SH04_03170 NZ_CP010443.1 Protein Homology CDS 651391 651522 . - 0 ID=cds601;Parent=gene633;Dbxref=Genbank:WP_001309182.1;Name=WP_001309182.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001309182.1;transl_table=11 NZ_CP010443.1 RefSeq gene 651686 651895 . + . ID=gene634;Name=SH04_RS03180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03180;old_locus_tag=SH04_03175 NZ_CP010443.1 Protein Homology CDS 651686 651895 . + 0 ID=cds602;Parent=gene634;Dbxref=Genbank:WP_001312503.1;Name=WP_001312503.1;gbkey=CDS;product=DNA helicase superfamily I;protein_id=WP_001312503.1;transl_table=11 NZ_CP010443.1 RefSeq gene 651862 652878 . + . ID=gene635;Name=SH04_RS03185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03185;old_locus_tag=SH04_03180 NZ_CP010443.1 Protein Homology CDS 651862 652878 . + 0 ID=cds603;Parent=gene635;Dbxref=Genbank:WP_001312504.1;Name=WP_001312504.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001312504.1;transl_table=11 NZ_CP010443.1 RefSeq gene 653461 654441 . - . ID=gene636;Name=SH04_RS03190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03190;old_locus_tag=SH04_03185 NZ_CP010443.1 Protein Homology CDS 653461 654441 . - 0 ID=cds604;Parent=gene636;Dbxref=Genbank:WP_000991438.1;Name=WP_000991438.1;gbkey=CDS;product=9-O-acetyl-N-acetylneuraminic acid deacetylase;protein_id=WP_000991438.1;transl_table=11 NZ_CP010443.1 RefSeq gene 654506 655612 . - . ID=gene637;Name=SH04_RS03195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03195;old_locus_tag=SH04_03190 NZ_CP010443.1 Protein Homology CDS 654506 655612 . - 0 ID=cds605;Parent=gene637;Dbxref=Genbank:WP_001309184.1;Name=WP_001309184.1;gbkey=CDS;product=N-acetylneuraminate epimerase;protein_id=WP_001309184.1;transl_table=11 NZ_CP010443.1 RefSeq gene 655632 656180 . - . ID=gene638;Name=SH04_RS03200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03200;old_locus_tag=SH04_03195 NZ_CP010443.1 Protein Homology CDS 655632 656180 . - 0 ID=cds606;Parent=gene638;Dbxref=Genbank:WP_000445580.1;Name=WP_000445580.1;gbkey=CDS;product=porin;protein_id=WP_000445580.1;transl_table=11 NZ_CP010443.1 RefSeq gene 656720 656866 . + . ID=gene639;Name=SH04_RS03205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03205;old_locus_tag=SH04_03200 NZ_CP010443.1 Protein Homology CDS 656720 656866 . + 0 ID=cds607;Parent=gene639;Dbxref=Genbank:WP_032083584.1;Name=WP_032083584.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032083584.1;transl_table=11 NZ_CP010443.1 RefSeq gene 657148 657543 . - . ID=gene640;Name=SH04_RS03210;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS03210;pseudo=true NZ_CP010443.1 Protein Homology CDS 657148 657543 . - 0 ID=cds608;Parent=gene640;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(657277..657279)%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 657804 658406 . + . ID=gene641;Name=SH04_RS03215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03215;old_locus_tag=SH04_03210 NZ_CP010443.1 Protein Homology CDS 657804 658406 . + 0 ID=cds609;Parent=gene641;Dbxref=Genbank:WP_000790583.1;Name=WP_000790583.1;gbkey=CDS;product=type 1 fimbriae regulatory protein FimB;protein_id=WP_000790583.1;transl_table=11 NZ_CP010443.1 RefSeq gene 658884 659480 . + . ID=gene642;Name=SH04_RS03220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03220;old_locus_tag=SH04_03215 NZ_CP010443.1 Protein Homology CDS 658884 659480 . + 0 ID=cds610;Parent=gene642;Dbxref=Genbank:WP_000044711.1;Name=WP_000044711.1;Note=inversion of on/off regulator of fimA;gbkey=CDS;product=type 1 fimbriae regulatory protein FimE;protein_id=WP_000044711.1;transl_table=11 NZ_CP010443.1 RefSeq gene 659560 659748 . - . ID=gene643;Name=SH04_RS03225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03225;old_locus_tag=SH04_03220 NZ_CP010443.1 Protein Homology CDS 659560 659748 . - 0 ID=cds611;Parent=gene643;Dbxref=Genbank:WP_032139953.1;Name=WP_032139953.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032139953.1;transl_table=11 NZ_CP010443.1 RefSeq gene 659962 660510 . + . ID=gene644;Name=fimA;gbkey=Gene;gene=fimA;gene_biotype=protein_coding;locus_tag=SH04_RS03230;old_locus_tag=SH04_03225 NZ_CP010443.1 Protein Homology CDS 659962 660510 . + 0 ID=cds612;Parent=gene644;Dbxref=Genbank:WP_000695564.1;Name=WP_000695564.1;gbkey=CDS;gene=fimA;product=type-1 fimbrial protein%2C A chain;protein_id=WP_000695564.1;transl_table=11 NZ_CP010443.1 RefSeq gene 660617 661114 . + . ID=gene645;Name=SH04_RS03235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03235;old_locus_tag=SH04_03230 NZ_CP010443.1 Protein Homology CDS 660617 661114 . + 0 ID=cds613;Parent=gene645;Dbxref=Genbank:WP_000457578.1;Name=WP_000457578.1;gbkey=CDS;product=fimbrin fimI;protein_id=WP_000457578.1;transl_table=11 NZ_CP010443.1 RefSeq gene 661151 661876 . + . ID=gene646;Name=SH04_RS03240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03240;old_locus_tag=SH04_03235 NZ_CP010443.1 Protein Homology CDS 661151 661876 . + 0 ID=cds614;Parent=gene646;Dbxref=Genbank:WP_000066547.1;Name=WP_000066547.1;gbkey=CDS;product=chaperone protein FimC;protein_id=WP_000066547.1;transl_table=11 NZ_CP010443.1 RefSeq gene 661943 664579 . + . ID=gene647;Name=SH04_RS03245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03245;old_locus_tag=SH04_03240 NZ_CP010443.1 Protein Homology CDS 661943 664579 . + 0 ID=cds615;Parent=gene647;Dbxref=Genbank:WP_000121005.1;Name=WP_000121005.1;gbkey=CDS;product=outer membrane usher protein FimD;protein_id=WP_000121005.1;transl_table=11 NZ_CP010443.1 RefSeq gene 664589 665119 . + . ID=gene648;Name=SH04_RS03250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03250;old_locus_tag=SH04_03245 NZ_CP010443.1 Protein Homology CDS 664589 665119 . + 0 ID=cds616;Parent=gene648;Dbxref=Genbank:WP_001244827.1;Name=WP_001244827.1;gbkey=CDS;product=protein FimF;protein_id=WP_001244827.1;transl_table=11 NZ_CP010443.1 RefSeq gene 665132 665635 . + . ID=gene649;Name=SH04_RS03255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03255;old_locus_tag=SH04_03250 NZ_CP010443.1 Protein Homology CDS 665132 665635 . + 0 ID=cds617;Parent=gene649;Dbxref=Genbank:WP_000870592.1;Name=WP_000870592.1;gbkey=CDS;product=protein FimG;protein_id=WP_000870592.1;transl_table=11 NZ_CP010443.1 RefSeq gene 665655 666557 . + . ID=gene650;Name=SH04_RS03260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03260;old_locus_tag=SH04_03255 NZ_CP010443.1 Protein Homology CDS 665655 666557 . + 0 ID=cds618;Parent=gene650;Dbxref=Genbank:WP_000832247.1;Name=WP_000832247.1;gbkey=CDS;product=protein FimH;protein_id=WP_000832247.1;transl_table=11 NZ_CP010443.1 RefSeq gene 666800 668143 . - . ID=gene651;Name=SH04_RS03265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03265;old_locus_tag=SH04_03260 NZ_CP010443.1 Protein Homology CDS 666800 668143 . - 0 ID=cds619;Parent=gene651;Dbxref=Genbank:WP_000558251.1;Name=WP_000558251.1;gbkey=CDS;product=gluconate transporter;protein_id=WP_000558251.1;transl_table=11 NZ_CP010443.1 RefSeq gene 668301 668531 . + . ID=gene652;Name=SH04_RS03270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03270;old_locus_tag=SH04_03265 NZ_CP010443.1 Protein Homology CDS 668301 668531 . + 0 ID=cds620;Parent=gene652;Dbxref=Genbank:WP_001332880.1;Name=WP_001332880.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001332880.1;transl_table=11 NZ_CP010443.1 RefSeq gene 668483 669667 . + . ID=gene653;Name=SH04_RS03275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03275;old_locus_tag=SH04_03270 NZ_CP010443.1 Protein Homology CDS 668483 669667 . + 0 ID=cds621;Parent=gene653;Dbxref=Genbank:WP_000438562.1;Name=WP_000438562.1;Note=catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate;gbkey=CDS;product=mannonate dehydratase;protein_id=WP_000438562.1;transl_table=11 NZ_CP010443.1 RefSeq gene 669748 671208 . + . ID=gene654;Name=SH04_RS03280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03280;old_locus_tag=SH04_03275 NZ_CP010443.1 Protein Homology CDS 669748 671208 . + 0 ID=cds622;Parent=gene654;Dbxref=Genbank:WP_000208205.1;Name=WP_000208205.1;gbkey=CDS;product=D-mannonate oxidoreductase;protein_id=WP_000208205.1;transl_table=11 NZ_CP010443.1 RefSeq gene 671230 671424 . - . ID=gene655;Name=SH04_RS03285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03285;old_locus_tag=SH04_03280 NZ_CP010443.1 Protein Homology CDS 671230 671424 . - 0 ID=cds623;Parent=gene655;Dbxref=Genbank:WP_000242065.1;Name=WP_000242065.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000242065.1;transl_table=11 NZ_CP010443.1 RefSeq gene 671423 672196 . + . ID=gene656;Name=SH04_RS03290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03290;old_locus_tag=SH04_03285 NZ_CP010443.1 Protein Homology CDS 671423 672196 . + 0 ID=cds624;Parent=gene656;Dbxref=Genbank:WP_000833679.1;Name=WP_000833679.1;Note=regulates the expression of uxuBA;gbkey=CDS;product=Uxu operon transcriptional regulator;protein_id=WP_000833679.1;transl_table=11 NZ_CP010443.1 RefSeq gene 672337 673167 . - . ID=gene657;Name=SH04_RS03295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03295;old_locus_tag=SH04_03290 NZ_CP010443.1 Protein Homology CDS 672337 673167 . - 0 ID=cds625;Parent=gene657;Dbxref=Genbank:WP_000062552.1;Name=WP_000062552.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000062552.1;transl_table=11 NZ_CP010443.1 RefSeq gene 673085 673258 . - . ID=gene658;Name=SH04_RS03300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03300;old_locus_tag=SH04_03295 NZ_CP010443.1 Protein Homology CDS 673085 673258 . - 0 ID=cds626;Parent=gene658;Dbxref=Genbank:WP_012602673.1;Name=WP_012602673.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012602673.1;transl_table=11 NZ_CP010443.1 RefSeq gene 673740 673874 . + . ID=gene659;Name=SH04_RS03310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03310;old_locus_tag=SH04_03305 NZ_CP010443.1 Protein Homology CDS 673740 673874 . + 0 ID=cds627;Parent=gene659;Dbxref=Genbank:WP_001312509.1;Name=WP_001312509.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001312509.1;transl_table=11 NZ_CP010443.1 RefSeq gene 673840 674232 . + . ID=gene660;Name=iraD;gbkey=Gene;gene=iraD;gene_biotype=protein_coding;locus_tag=SH04_RS03315;old_locus_tag=SH04_03310 NZ_CP010443.1 Protein Homology CDS 673840 674232 . + 0 ID=cds628;Parent=gene660;Dbxref=Genbank:WP_001309187.1;Name=WP_001309187.1;Note=inhibitor of RssB activity in response to DNA damage%3B blocks degradation of stationary phase sigma factor RpoS;gbkey=CDS;gene=iraD;product=anti-adapter protein IraD;protein_id=WP_001309187.1;transl_table=11 NZ_CP010443.1 RefSeq gene 674225 675136 . - . ID=gene661;Name=SH04_RS03320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03320;old_locus_tag=SH04_03315 NZ_CP010443.1 Protein Homology CDS 674225 675136 . - 0 ID=cds629;Parent=gene661;Dbxref=Genbank:WP_000340740.1;Name=WP_000340740.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000340740.1;transl_table=11 NZ_CP010443.1 RefSeq gene 675201 676373 . - . ID=gene662;Name=SH04_RS03325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03325;old_locus_tag=SH04_03320 NZ_CP010443.1 Protein Homology CDS 675201 676373 . - 0 ID=cds630;Parent=gene662;Dbxref=Genbank:WP_000568432.1;Name=WP_000568432.1;gbkey=CDS;product=isoaspartyl dipeptidase;protein_id=WP_000568432.1;transl_table=11 NZ_CP010443.1 RefSeq gene 676386 676847 . - . ID=gene663;Name=SH04_RS03330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03330;old_locus_tag=SH04_03325 NZ_CP010443.1 Protein Homology CDS 676386 676847 . - 0 ID=cds631;Parent=gene663;Dbxref=Genbank:WP_000211971.1;Name=WP_000211971.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000211971.1;transl_table=11 NZ_CP010443.1 RefSeq gene 676844 677527 . - . ID=gene664;Name=SH04_RS03335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03335;old_locus_tag=SH04_03330 NZ_CP010443.1 Protein Homology CDS 676844 677527 . - 0 ID=cds632;Parent=gene664;Dbxref=Genbank:WP_001295597.1;Name=WP_001295597.1;gbkey=CDS;product=nucleoside recognition pore and gate family inner membrane transporter;protein_id=WP_001295597.1;transl_table=11 NZ_CP010443.1 RefSeq gene 677777 678331 . + . ID=gene665;Name=SH04_RS03340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03340;old_locus_tag=SH04_03335 NZ_CP010443.1 Protein Homology CDS 677777 678331 . + 0 ID=cds633;Parent=gene665;Dbxref=Genbank:WP_001151855.1;Name=WP_001151855.1;Note=in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate%3B functions in tRNA splicing%3B the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown;gbkey=CDS;product=RNA 2'-phosphotransferase;protein_id=WP_001151855.1;transl_table=11 NZ_CP010443.1 RefSeq gene 678344 679522 . - . ID=gene666;Name=SH04_RS03345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03345;old_locus_tag=SH04_03340 NZ_CP010443.1 Protein Homology CDS 678344 679522 . - 0 ID=cds634;Parent=gene666;Dbxref=Genbank:WP_001141220.1;Name=WP_001141220.1;gbkey=CDS;product=DUF1228 family inner membrane MFS superfamily transporter;protein_id=WP_001141220.1;transl_table=11 NZ_CP010443.1 RefSeq gene 679590 680450 . - . ID=gene667;Name=SH04_RS03350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03350;old_locus_tag=SH04_03345 NZ_CP010443.1 Protein Homology CDS 679590 680450 . - 0 ID=cds635;Parent=gene667;Dbxref=Genbank:WP_001350572.1;Name=WP_001350572.1;gbkey=CDS;product=SdiA-regulated family membrane-anchored protein%3B phytase-like esterase;protein_id=WP_001350572.1;transl_table=11 NZ_CP010443.1 RefSeq gene 680515 680772 . - . ID=gene668;Name=SH04_RS03355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03355;old_locus_tag=SH04_03350 NZ_CP010443.1 Protein Homology CDS 680515 680772 . - 0 ID=cds636;Parent=gene668;Dbxref=Genbank:WP_000657675.1;Name=WP_000657675.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000657675.1;transl_table=11 NZ_CP010443.1 RefSeq gene 680769 681536 . - . ID=gene669;Name=SH04_RS03360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03360;old_locus_tag=SH04_03355 NZ_CP010443.1 Protein Homology CDS 680769 681536 . - 0 ID=cds637;Parent=gene669;Dbxref=Genbank:WP_000331745.1;Name=WP_000331745.1;gbkey=CDS;product=2-hydroxyglutaryl-CoA dehydratase activator;protein_id=WP_000331745.1;transl_table=11 NZ_CP010443.1 RefSeq gene 681546 682697 . - . ID=gene670;Name=SH04_RS03365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03365;old_locus_tag=SH04_03360 NZ_CP010443.1 Protein Homology CDS 681546 682697 . - 0 ID=cds638;Parent=gene670;Dbxref=Genbank:WP_001300012.1;Name=WP_001300012.1;gbkey=CDS;product=2-hydroxyglutaryl-CoA dehydratase;protein_id=WP_001300012.1;transl_table=11 NZ_CP010443.1 RefSeq gene 682813 684093 . - . ID=gene671;Name=SH04_RS03370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03370;old_locus_tag=SH04_03365 NZ_CP010443.1 Protein Homology CDS 682813 684093 . - 0 ID=cds639;Parent=gene671;Dbxref=Genbank:WP_001037419.1;Name=WP_001037419.1;gbkey=CDS;product=zinc-type alcohol dehydrogenase-like protein;protein_id=WP_001037419.1;transl_table=11 NZ_CP010443.1 RefSeq gene 684134 685366 . - . ID=gene672;Name=SH04_RS03375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03375;old_locus_tag=SH04_03370 NZ_CP010443.1 Protein Homology CDS 684134 685366 . - 0 ID=cds640;Parent=gene672;Dbxref=Genbank:WP_001137036.1;Name=WP_001137036.1;Note=is involved in resistance to acriflavine%2C chloramphenicol%2C norfloxacin%2C ethidium bromide and TPP;gbkey=CDS;product=multidrug resistance protein MdtM;protein_id=WP_001137036.1;transl_table=11 NZ_CP010443.1 RefSeq gene 685845 686765 . + . ID=gene673;Name=SH04_RS03380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS03380;pseudo=true NZ_CP010443.1 Protein Homology CDS 685845 686765 . + 0 ID=cds641;Parent=gene673;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:686154..686156%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 687009 688421 . - . ID=gene674;Name=SH04_RS03385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03385;old_locus_tag=SH04_03380 NZ_CP010443.1 Protein Homology CDS 687009 688421 . - 0 ID=cds642;Parent=gene674;Dbxref=Genbank:WP_000199300.1;Name=WP_000199300.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000199300.1;transl_table=11 NZ_CP010443.1 RefSeq gene 688598 688762 . + . ID=gene675;Name=SH04_RS03390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03390;old_locus_tag=SH04_03385 NZ_CP010443.1 Protein Homology CDS 688598 688762 . + 0 ID=cds643;Parent=gene675;Dbxref=Genbank:WP_000394280.1;Name=WP_000394280.1;gbkey=CDS;product=DUF1127 domain-containing protein;protein_id=WP_000394280.1;transl_table=11 NZ_CP010443.1 RefSeq gene 689213 690778 . + . ID=gene676;Name=SH04_RS03395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03395;old_locus_tag=SH04_03390 NZ_CP010443.1 Protein Homology CDS 689213 690778 . + 0 ID=cds644;Parent=gene676;Dbxref=Genbank:WP_000964362.1;Name=WP_000964362.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000964362.1;transl_table=11 NZ_CP010443.1 RefSeq gene 690982 693702 . + . ID=gene677;Name=SH04_RS03400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03400;old_locus_tag=SH04_03395 NZ_CP010443.1 Protein Homology CDS 690982 693702 . + 0 ID=cds645;Parent=gene677;Dbxref=Genbank:WP_014639049.1;Name=WP_014639049.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014639049.1;transl_table=11 NZ_CP010443.1 RefSeq gene 693759 694835 . - . ID=gene678;Name=SH04_RS03405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03405;old_locus_tag=SH04_03400 NZ_CP010443.1 Protein Homology CDS 693759 694835 . - 0 ID=cds646;Parent=gene678;Dbxref=Genbank:WP_000372671.1;Name=WP_000372671.1;gbkey=CDS;product=protein mcrC;protein_id=WP_000372671.1;transl_table=11 NZ_CP010443.1 RefSeq gene 694805 696184 . - . ID=gene679;Name=SH04_RS03410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03410;old_locus_tag=SH04_03405 NZ_CP010443.1 Protein Homology CDS 694805 696184 . - 0 ID=cds647;Parent=gene679;Dbxref=Genbank:WP_000443951.1;Name=WP_000443951.1;Note=McrB protein together with McrC forms the McrBC restriction system%3B recognizes N4- and C5-methylcytosine (and 5-hydroxy-methylcytosines)%3B appears to act against 5-methylcytosine preceded by a purine residue;gbkey=CDS;product=5-methylcytosine-specific restriction enzyme B;protein_id=WP_000443951.1;transl_table=11 NZ_CP010443.1 RefSeq gene 696346 696687 . - . ID=gene680;Name=SH04_RS03415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03415;old_locus_tag=SH04_03410 NZ_CP010443.1 Protein Homology CDS 696346 696687 . - 0 ID=cds648;Parent=gene680;Dbxref=Genbank:WP_000132601.1;Name=WP_000132601.1;Note=involved in the degradation of RNA%3B may be involved in the recycling of RNA during the SOS response;gbkey=CDS;product=hypothetical protein;protein_id=WP_000132601.1;transl_table=11 NZ_CP010443.1 RefSeq gene 696915 698309 . - . ID=gene681;Name=SH04_RS03420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03420;old_locus_tag=SH04_03415 NZ_CP010443.1 Protein Homology CDS 696915 698309 . - 0 ID=cds649;Parent=gene681;Dbxref=Genbank:WP_001272447.1;Name=WP_001272447.1;gbkey=CDS;product=type-1 restriction enzyme EcoKI specificity protein;protein_id=WP_001272447.1;transl_table=11 NZ_CP010443.1 RefSeq gene 698306 699895 . - . ID=gene682;Name=SH04_RS03425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03425;old_locus_tag=SH04_03420 NZ_CP010443.1 Protein Homology CDS 698306 699895 . - 0 ID=cds650;Parent=gene682;Dbxref=Genbank:WP_001063204.1;Name=WP_001063204.1;gbkey=CDS;product=type I restriction enzyme EcoKI M protein;protein_id=WP_001063204.1;transl_table=11 NZ_CP010443.1 RefSeq gene 700096 703608 . - . ID=gene683;Name=SH04_RS03430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03430;old_locus_tag=SH04_03425 NZ_CP010443.1 Protein Homology CDS 700096 703608 . - 0 ID=cds651;Parent=gene683;Dbxref=Genbank:WP_000981388.1;Name=WP_000981388.1;gbkey=CDS;product=type I restriction enzyme EcoKI R protein;protein_id=WP_000981388.1;transl_table=11 NZ_CP010443.1 RefSeq gene 704051 705256 . - . ID=gene684;Name=SH04_RS03435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03435;old_locus_tag=SH04_03430 NZ_CP010443.1 Protein Homology CDS 704051 705256 . - 0 ID=cds652;Parent=gene684;Dbxref=Genbank:WP_046377546.1;Name=WP_046377546.1;gbkey=CDS;product=MFS transporter;protein_id=WP_046377546.1;transl_table=11 NZ_CP010443.1 RefSeq gene 705338 705961 . + . ID=gene685;Name=SH04_RS03440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03440;old_locus_tag=SH04_03435 NZ_CP010443.1 Protein Homology CDS 705338 705961 . + 0 ID=cds653;Parent=gene685;Dbxref=Genbank:WP_046377547.1;Name=WP_046377547.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_046377547.1;transl_table=11 NZ_CP010443.1 RefSeq gene 706065 706634 . + . ID=gene686;Name=SH04_RS03445;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS03445;partial=true;pseudo=true;start_range=.,706065 NZ_CP010443.1 Protein Homology CDS 706065 706634 . + 0 ID=cds654;Parent=gene686;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=restriction endonuclease;pseudo=true;start_range=.,706065;transl_table=11 NZ_CP010443.1 RefSeq gene 706680 707636 . - . ID=gene687;Name=SH04_RS03450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03450;old_locus_tag=SH04_03445 NZ_CP010443.1 Protein Homology CDS 706680 707636 . - 0 ID=cds655;Parent=gene687;Dbxref=Genbank:WP_001312515.1;Name=WP_001312515.1;gbkey=CDS;product=metal-binding GTPase;protein_id=WP_001312515.1;transl_table=11 NZ_CP010443.1 RefSeq gene 707647 707850 . - . ID=gene688;Name=SH04_RS03455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03455;old_locus_tag=SH04_03450 NZ_CP010443.1 Protein Homology CDS 707647 707850 . - 0 ID=cds656;Parent=gene688;Dbxref=Genbank:WP_000467859.1;Name=WP_000467859.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000467859.1;transl_table=11 NZ_CP010443.1 RefSeq gene 707900 710050 . - . ID=gene689;Name=SH04_RS03460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03460;old_locus_tag=SH04_03455 NZ_CP010443.1 Protein Homology CDS 707900 710050 . - 0 ID=cds657;Parent=gene689;Dbxref=Genbank:WP_001299714.1;Name=WP_001299714.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001299714.1;transl_table=11 NZ_CP010443.1 RefSeq gene 710095 710268 . - . ID=gene690;Name=SH04_RS03465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03465 NZ_CP010443.1 Protein Homology CDS 710095 710268 . - 0 ID=cds658;Parent=gene690;Dbxref=Genbank:WP_042004822.1;Name=WP_042004822.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_042004822.1;transl_table=11 NZ_CP010443.1 RefSeq gene 710428 712083 . + . ID=gene691;Name=SH04_RS03470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03470;old_locus_tag=SH04_03465 NZ_CP010443.1 Protein Homology CDS 710428 712083 . + 0 ID=cds659;Parent=gene691;Dbxref=Genbank:WP_000919536.1;Name=WP_000919536.1;Note=serine sensor receptor;gbkey=CDS;product=methyl-accepting chemotaxis protein I;protein_id=WP_000919536.1;transl_table=11 NZ_CP010443.1 RefSeq gene 712132 713493 . - . ID=gene692;Name=SH04_RS03475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03475;old_locus_tag=SH04_03470 NZ_CP010443.1 Protein Homology CDS 712132 713493 . - 0 ID=cds660;Parent=gene692;Dbxref=Genbank:WP_000410113.1;Name=WP_000410113.1;gbkey=CDS;product=L-galactonate transporter;protein_id=WP_000410113.1;transl_table=11 NZ_CP010443.1 RefSeq gene 713708 714622 . - . ID=gene693;Name=SH04_RS03480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03480;old_locus_tag=SH04_03475 NZ_CP010443.1 Protein Homology CDS 713708 714622 . - 0 ID=cds661;Parent=gene693;Dbxref=Genbank:WP_000091570.1;Name=WP_000091570.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000091570.1;transl_table=11 NZ_CP010443.1 RefSeq gene 714761 715783 . + . ID=gene694;Name=SH04_RS03485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03485;old_locus_tag=SH04_03480 NZ_CP010443.1 Protein Homology CDS 714761 715783 . + 0 ID=cds662;Parent=gene694;Dbxref=Genbank:WP_000106030.1;Name=WP_000106030.1;gbkey=CDS;product=L-galactonate-5-dehydrogenase;protein_id=WP_000106030.1;transl_table=11 NZ_CP010443.1 RefSeq gene 715921 718212 . - . ID=gene695;Name=SH04_RS03490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03490;old_locus_tag=SH04_03485 NZ_CP010443.1 Protein Homology CDS 715921 718212 . - 0 ID=cds663;Parent=gene695;Dbxref=Genbank:WP_001292679.1;Name=WP_001292679.1;Note=catalyzes the transfer of phosphoglycerol to the glucan backbone;gbkey=CDS;product=phosphoglycerol transferase I;protein_id=WP_001292679.1;transl_table=11 NZ_CP010443.1 RefSeq gene 718466 718957 . - . ID=gene696;Name=SH04_RS03495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03495;old_locus_tag=SH04_03490 NZ_CP010443.1 Protein Homology CDS 718466 718957 . - 0 ID=cds664;Parent=gene696;Dbxref=Genbank:WP_001297637.1;Name=WP_001297637.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001297637.1;transl_table=11 NZ_CP010443.1 RefSeq gene 719009 719746 . - . ID=gene697;Name=SH04_RS03500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03500;old_locus_tag=SH04_03495 NZ_CP010443.1 Protein Homology CDS 719009 719746 . - 0 ID=cds665;Parent=gene697;Dbxref=Genbank:WP_000799911.1;Name=WP_000799911.1;Note=acts to load the DnaB helicase onto the initiation site during DNA replication;gbkey=CDS;product=DNA replication protein DnaC;protein_id=WP_000799911.1;transl_table=11 NZ_CP010443.1 RefSeq gene 719749 720288 . - . ID=gene698;Name=SH04_RS03505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03505;old_locus_tag=SH04_03500 NZ_CP010443.1 Protein Homology CDS 719749 720288 . - 0 ID=cds666;Parent=gene698;Dbxref=Genbank:WP_000098818.1;Name=WP_000098818.1;Note=This protein is required for primosome-dependent normal DNA replication%3B it is also involved in inducing stable DNA replication during SOS response. It forms%2C in concert with dnaB protein and other prepriming proteins dnaC%2C N%2C N'%2C N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N';gbkey=CDS;product=primosomal protein 1;protein_id=WP_000098818.1;transl_table=11 NZ_CP010443.1 RefSeq gene 720395 720868 . - . ID=gene699;Name=SH04_RS03510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03510;old_locus_tag=SH04_03505 NZ_CP010443.1 Protein Homology CDS 720395 720868 . - 0 ID=cds667;Parent=gene699;Dbxref=Genbank:WP_000538191.1;Name=WP_000538191.1;gbkey=CDS;product=DUF3815 domain-containing protein;protein_id=WP_000538191.1;transl_table=11 NZ_CP010443.1 RefSeq gene 720859 721629 . - . ID=gene700;Name=SH04_RS03515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03515;old_locus_tag=SH04_03510 NZ_CP010443.1 Protein Homology CDS 720859 721629 . - 0 ID=cds668;Parent=gene700;Dbxref=Genbank:WP_001338213.1;Name=WP_001338213.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001338213.1;transl_table=11 NZ_CP010443.1 RefSeq gene 722248 722973 . + . ID=gene701;Name=SH04_RS03520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03520;old_locus_tag=SH04_03515 NZ_CP010443.1 Protein Homology CDS 722248 722973 . + 0 ID=cds669;Parent=gene701;Dbxref=Genbank:WP_000936635.1;Name=WP_000936635.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000936635.1;transl_table=11 NZ_CP010443.1 RefSeq gene 722931 723608 . + . ID=gene702;Name=SH04_RS03525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03525;old_locus_tag=SH04_03520 NZ_CP010443.1 Protein Homology CDS 722931 723608 . + 0 ID=cds670;Parent=gene702;Dbxref=Genbank:WP_001301727.1;Name=WP_001301727.1;Note=regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin;gbkey=CDS;product=transcriptional activator protein BglJ;protein_id=WP_001301727.1;transl_table=11 NZ_CP010443.1 RefSeq gene 723646 724434 . - . ID=gene703;Name=SH04_RS03530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03530;old_locus_tag=SH04_03525 NZ_CP010443.1 Protein Homology CDS 723646 724434 . - 0 ID=cds671;Parent=gene703;Dbxref=Genbank:WP_000331618.1;Name=WP_000331618.1;gbkey=CDS;product=ferric iron reductase FhuF;protein_id=WP_000331618.1;transl_table=11 NZ_CP010443.1 RefSeq gene 724536 724811 . + . ID=gene704;Name=SH04_RS03535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03535;old_locus_tag=SH04_03530 NZ_CP010443.1 Protein Homology CDS 724536 724811 . + 0 ID=cds672;Parent=gene704;Dbxref=Genbank:WP_000604532.1;Name=WP_000604532.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000604532.1;transl_table=11 NZ_CP010443.1 RefSeq gene 724850 724936 . - . ID=gene705;Name=SH04_RS03540;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS03540;old_locus_tag=SH04_03535 NZ_CP010443.1 tRNAscan-SE tRNA 724850 724936 . - . ID=rna32;Parent=gene705;anticodon=(pos:complement(724900..724902));gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 tRNAscan-SE exon 724850 724936 . - . ID=id48;Parent=rna32;anticodon=(pos:complement(724900..724902));gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 RefSeq gene 724971 725057 . - . ID=gene706;Name=SH04_RS03545;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS03545;old_locus_tag=SH04_03540 NZ_CP010443.1 tRNAscan-SE tRNA 724971 725057 . - . ID=rna33;Parent=gene706;anticodon=(pos:complement(725021..725023));gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 tRNAscan-SE exon 724971 725057 . - . ID=id49;Parent=rna33;anticodon=(pos:complement(725021..725023));gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 RefSeq gene 725086 725172 . - . ID=gene707;Name=SH04_RS03550;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS03550;old_locus_tag=SH04_03545 NZ_CP010443.1 tRNAscan-SE tRNA 725086 725172 . - . ID=rna34;Parent=gene707;anticodon=(pos:complement(725136..725138));gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 tRNAscan-SE exon 725086 725172 . - . ID=id50;Parent=rna34;anticodon=(pos:complement(725136..725138));gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 RefSeq gene 725440 726471 . - . ID=gene708;Name=rsmC;gbkey=Gene;gene=rsmC;gene_biotype=protein_coding;locus_tag=SH04_RS03555;old_locus_tag=SH04_03550 NZ_CP010443.1 Protein Homology CDS 725440 726471 . - 0 ID=cds673;Parent=gene708;Dbxref=Genbank:WP_001272330.1;Name=WP_001272330.1;Note=16S rRNA M2G1207 methyltransferase%3B one of many enzymes that modify bases of the ribosomal RNA%3B this enzyme methylates the G at position 1207 of the small ribosomal subunit;gbkey=CDS;gene=rsmC;product=ribosomal RNA small subunit methyltransferase C;protein_id=WP_001272330.1;transl_table=11 NZ_CP010443.1 RefSeq gene 726574 726987 . + . ID=gene709;Name=SH04_RS03560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03560;old_locus_tag=SH04_03555 NZ_CP010443.1 Protein Homology CDS 726574 726987 . + 0 ID=cds674;Parent=gene709;Dbxref=Genbank:WP_000204012.1;Name=WP_000204012.1;Note=with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB;gbkey=CDS;product=DNA polymerase III subunit psi;protein_id=WP_000204012.1;transl_table=11 NZ_CP010443.1 RefSeq gene 726956 727402 . + . ID=gene710;Name=rimI;gbkey=Gene;gene=rimI;gene_biotype=protein_coding;locus_tag=SH04_RS03565;old_locus_tag=SH04_03560 NZ_CP010443.1 Protein Homology CDS 726956 727402 . + 0 ID=cds675;Parent=gene710;Dbxref=Genbank:WP_001092461.1;Name=WP_001092461.1;Note=alanine acetyltransferase that specifically acetylates ribosomal protein S18;gbkey=CDS;gene=rimI;product=ribosomal-protein-alanine acetyltransferase;protein_id=WP_001092461.1;transl_table=11 NZ_CP010443.1 RefSeq gene 727417 728094 . + . ID=gene711;Name=SH04_RS03570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03570;old_locus_tag=SH04_03565 NZ_CP010443.1 Protein Homology CDS 727417 728094 . + 0 ID=cds676;Parent=gene711;Dbxref=Genbank:WP_000870710.1;Name=WP_000870710.1;Note=manganese-dependent 5'-nucleotidase%3B specific for 5'-UMP%2C 5'-dUMP%2C and 5'-dTMP%3B member of haloacid dehalogenase (HAD)-like hydrolase superfamily;gbkey=CDS;product=pyrimidine 5'-nucleotidase YjjG;protein_id=WP_000870710.1;transl_table=11 NZ_CP010443.1 RefSeq gene 728185 729774 . + . ID=gene712;Name=prfC;gbkey=Gene;gene=prfC;gene_biotype=protein_coding;locus_tag=SH04_RS03575;old_locus_tag=SH04_03570 NZ_CP010443.1 Protein Homology CDS 728185 729774 . + 0 ID=cds677;Parent=gene712;Dbxref=Genbank:WP_000175940.1;Name=WP_000175940.1;Note=stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred%3B GDP/GTP-binding protein;gbkey=CDS;gene=prfC;product=peptide chain release factor 3;protein_id=WP_000175940.1;transl_table=11 NZ_CP010443.1 RefSeq gene 730167 730772 . + . ID=gene713;Name=SH04_RS03580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03580;old_locus_tag=SH04_03575 NZ_CP010443.1 Protein Homology CDS 730167 730772 . + 0 ID=cds678;Parent=gene713;Dbxref=Genbank:WP_001295748.1;Name=WP_001295748.1;gbkey=CDS;product=osmotically-inducible protein Y;protein_id=WP_001295748.1;transl_table=11 NZ_CP010443.1 RefSeq gene 730899 731060 . + . ID=gene714;Name=SH04_RS03585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03585;old_locus_tag=SH04_03580 NZ_CP010443.1 Protein Homology CDS 730899 731060 . + 0 ID=cds679;Parent=gene714;Dbxref=Genbank:WP_000490275.1;Name=WP_000490275.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000490275.1;transl_table=11 NZ_CP010443.1 RefSeq gene 731182 732255 . + . ID=gene715;Name=SH04_RS03590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03590;old_locus_tag=SH04_03585 NZ_CP010443.1 Protein Homology CDS 731182 732255 . + 0 ID=cds680;Parent=gene715;Dbxref=Genbank:WP_001299799.1;Name=WP_001299799.1;gbkey=CDS;product=patatin;protein_id=WP_001299799.1;transl_table=11 NZ_CP010443.1 RefSeq gene 732252 733031 . + . ID=gene716;Name=SH04_RS03595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03595;old_locus_tag=SH04_03590 NZ_CP010443.1 Protein Homology CDS 732252 733031 . + 0 ID=cds681;Parent=gene716;Dbxref=Genbank:WP_000563040.1;Name=WP_000563040.1;gbkey=CDS;product=DNase;protein_id=WP_000563040.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 733026 733439 . + . ID=id51;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 733451 734314 . - . ID=gene717;Name=SH04_RS03600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03600;old_locus_tag=SH04_03595 NZ_CP010443.1 Protein Homology CDS 733451 734314 . - 0 ID=cds682;Parent=gene717;Dbxref=Genbank:WP_001088415.1;Name=WP_001088415.1;gbkey=CDS;product=glycine radical enzyme activase;protein_id=WP_001088415.1;transl_table=11 NZ_CP010443.1 RefSeq gene 734286 735836 . - . ID=gene718;Name=SH04_RS03605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03605;old_locus_tag=SH04_03600 NZ_CP010443.1 Protein Homology CDS 734286 735836 . - 0 ID=cds683;Parent=gene718;Dbxref=Genbank:WP_001143253.1;Name=WP_001143253.1;gbkey=CDS;product=DUF3029 domain-containing protein;protein_id=WP_001143253.1;transl_table=11 NZ_CP010443.1 RefSeq gene 735888 735989 . + . ID=gene719;Name=SH04_RS03610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03610;old_locus_tag=SH04_03605 NZ_CP010443.1 Protein Homology CDS 735888 735989 . + 0 ID=cds684;Parent=gene719;Dbxref=Genbank:WP_000494556.1;Name=WP_000494556.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000494556.1;transl_table=11 NZ_CP010443.1 RefSeq gene 736094 736873 . + . ID=gene720;Name=SH04_RS03615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03615;old_locus_tag=SH04_03610 NZ_CP010443.1 Protein Homology CDS 736094 736873 . + 0 ID=cds685;Parent=gene720;Dbxref=Genbank:WP_001298497.1;Name=WP_001298497.1;Note=catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate;gbkey=CDS;product=deoxyribose-phosphate aldolase;protein_id=WP_001298497.1;transl_table=11 NZ_CP010443.1 RefSeq gene 737000 738322 . + . ID=gene721;Name=SH04_RS03620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03620;old_locus_tag=SH04_03615 NZ_CP010443.1 Protein Homology CDS 737000 738322 . + 0 ID=cds686;Parent=gene721;Dbxref=Genbank:WP_000477807.1;Name=WP_000477807.1;gbkey=CDS;product=thymidine phosphorylase;protein_id=WP_000477807.1;transl_table=11 NZ_CP010443.1 RefSeq gene 738374 739597 . + . ID=gene722;Name=SH04_RS03625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03625;old_locus_tag=SH04_03620 NZ_CP010443.1 Protein Homology CDS 738374 739597 . + 0 ID=cds687;Parent=gene722;Dbxref=Genbank:WP_000816471.1;Name=WP_000816471.1;gbkey=CDS;product=phosphopentomutase;protein_id=WP_000816471.1;transl_table=11 NZ_CP010443.1 RefSeq gene 739654 740373 . + . ID=gene723;Name=deoD;gbkey=Gene;gene=deoD;gene_biotype=protein_coding;locus_tag=SH04_RS03630;old_locus_tag=SH04_03625 NZ_CP010443.1 Protein Homology CDS 739654 740373 . + 0 ID=cds688;Parent=gene723;Dbxref=Genbank:WP_000224877.1;Name=WP_000224877.1;Note=catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate;gbkey=CDS;gene=deoD;product=purine nucleoside phosphorylase;protein_id=WP_000224877.1;transl_table=11 NZ_CP010443.1 RefSeq gene 740540 741871 . + . ID=gene724;Name=SH04_RS03635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03635;old_locus_tag=SH04_03630 NZ_CP010443.1 Protein Homology CDS 740540 741871 . + 0 ID=cds689;Parent=gene724;Dbxref=Genbank:WP_001293115.1;Name=WP_001293115.1;gbkey=CDS;product=kinase;protein_id=WP_001293115.1;transl_table=11 NZ_CP010443.1 RefSeq gene 741872 742888 . - . ID=gene725;Name=lplA;gbkey=Gene;gene=lplA;gene_biotype=protein_coding;locus_tag=SH04_RS03640;old_locus_tag=SH04_03635 NZ_CP010443.1 Protein Homology CDS 741872 742888 . - 0 ID=cds690;Parent=gene725;Dbxref=Genbank:WP_000105884.1;Name=WP_000105884.1;Note=Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins;gbkey=CDS;gene=lplA;product=lipoate-protein ligase A;protein_id=WP_000105884.1;transl_table=11 NZ_CP010443.1 RefSeq gene 742916 743560 . - . ID=gene726;Name=SH04_RS03645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03645;old_locus_tag=SH04_03640 NZ_CP010443.1 Protein Homology CDS 742916 743560 . - 0 ID=cds691;Parent=gene726;Dbxref=Genbank:WP_000124615.1;Name=WP_000124615.1;gbkey=CDS;product=protein Smp;protein_id=WP_000124615.1;transl_table=11 NZ_CP010443.1 RefSeq gene 743666 744634 . + . ID=gene727;Name=serB;gbkey=Gene;gene=serB;gene_biotype=protein_coding;locus_tag=SH04_RS03650;old_locus_tag=SH04_03645 NZ_CP010443.1 Protein Homology CDS 743666 744634 . + 0 ID=cds692;Parent=gene727;Dbxref=Genbank:WP_001132955.1;Name=WP_001132955.1;Note=catalyzes the formation of serine from O-phosphoserine;gbkey=CDS;gene=serB;product=phosphoserine phosphatase;protein_id=WP_001132955.1;transl_table=11 NZ_CP010443.1 RefSeq gene 744683 746065 . + . ID=gene728;Name=SH04_RS03655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03655;old_locus_tag=SH04_03650 NZ_CP010443.1 Protein Homology CDS 744683 746065 . + 0 ID=cds693;Parent=gene728;Dbxref=Genbank:WP_001029687.1;Name=WP_001029687.1;Note=Sms%3B stabilizes the strand-invasion intermediate during the DNA repair%3B involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents;gbkey=CDS;product=DNA repair protein RadA;protein_id=WP_001029687.1;transl_table=11 NZ_CP010443.1 RefSeq gene 746086 747318 . + . ID=gene729;Name=SH04_RS03660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03660;old_locus_tag=SH04_03655 NZ_CP010443.1 Protein Homology CDS 746086 747318 . + 0 ID=cds694;Parent=gene729;Dbxref=Genbank:WP_000093814.1;Name=WP_000093814.1;Note=catalyzes the formation of NAD(+) from nicotinamide ribonucleotide%3B catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside%3B also has a regulatory function;gbkey=CDS;product=trifunctional NAD biosynthesis/regulator protein NadR;protein_id=WP_000093814.1;transl_table=11 NZ_CP010443.1 RefSeq gene 747352 747519 . + . ID=gene730;Name=SH04_RS03665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03665;old_locus_tag=SH04_03660 NZ_CP010443.1 Protein Homology CDS 747352 747519 . + 0 ID=cds695;Parent=gene730;Dbxref=Genbank:WP_000007444.1;Name=WP_000007444.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000007444.1;transl_table=11 NZ_CP010443.1 RefSeq gene 747626 749293 . - . ID=gene731;Name=SH04_RS03670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03670;old_locus_tag=SH04_03665 NZ_CP010443.1 Protein Homology CDS 747626 749293 . - 0 ID=cds696;Parent=gene731;Dbxref=Genbank:WP_000046749.1;Name=WP_000046749.1;Note=ChvD%3B in Agrobacterium tumefaciens%2C mutations in both Walker boxes were found to affect virulence;gbkey=CDS;product=energy-dependent translational throttle protein EttA;protein_id=WP_000046749.1;transl_table=11 NZ_CP010443.1 RefSeq gene 749504 751441 . + . ID=gene732;Name=SH04_RS03675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03675;old_locus_tag=SH04_03670 NZ_CP010443.1 Protein Homology CDS 749504 751441 . + 0 ID=cds697;Parent=gene732;Dbxref=Genbank:WP_000409451.1;Name=WP_000409451.1;Note=catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan;gbkey=CDS;product=murein transglycosylase;protein_id=WP_000409451.1;transl_table=11 NZ_CP010443.1 RefSeq gene 751531 751857 . + . ID=gene733;Name=SH04_RS03680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03680;old_locus_tag=SH04_03675 NZ_CP010443.1 Protein Homology CDS 751531 751857 . + 0 ID=cds698;Parent=gene733;Dbxref=Genbank:WP_000068679.1;Name=WP_000068679.1;Note=When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription;gbkey=CDS;product=Trp operon repressor;protein_id=WP_000068679.1;transl_table=11 NZ_CP010443.1 RefSeq gene 752004 752516 . - . ID=gene734;Name=yjjX;gbkey=Gene;gene=yjjX;gene_biotype=protein_coding;locus_tag=SH04_RS03685;old_locus_tag=SH04_03680 NZ_CP010443.1 Protein Homology CDS 752004 752516 . - 0 ID=cds699;Parent=gene734;Dbxref=Genbank:WP_001338221.1;Name=WP_001338221.1;Note=pyrophosphatase%3B has activity against dUTP and dITP%3B the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226%3B in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms%3B in Escherichia coli overexpression of this gene leads to resistance to an HMP analog;gbkey=CDS;gene=yjjX;product=non-canonical purine NTP phosphatase;protein_id=WP_001338221.1;transl_table=11 NZ_CP010443.1 RefSeq gene 752568 753215 . + . ID=gene735;Name=SH04_RS03690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03690;old_locus_tag=SH04_03685 NZ_CP010443.1 Protein Homology CDS 752568 753215 . + 0 ID=cds700;Parent=gene735;Dbxref=Genbank:WP_000942344.1;Name=WP_000942344.1;Note=catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate;gbkey=CDS;product=phosphoglycerate mutase GpmB;protein_id=WP_000942344.1;transl_table=11 NZ_CP010443.1 RefSeq gene 753212 754081 . - . ID=gene736;Name=SH04_RS03695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03695;old_locus_tag=SH04_03690 NZ_CP010443.1 Protein Homology CDS 753212 754081 . - 0 ID=cds701;Parent=gene736;Dbxref=Genbank:WP_000371666.1;Name=WP_000371666.1;Note=AraC family%3B binds to the right arm of the replication origin oriC;gbkey=CDS;product=right origin-binding protein;protein_id=WP_000371666.1;transl_table=11 NZ_CP010443.1 RefSeq gene 754292 754765 . + . ID=gene737;Name=SH04_RS03700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03700;old_locus_tag=SH04_03695 NZ_CP010443.1 Protein Homology CDS 754292 754765 . + 0 ID=cds702;Parent=gene737;Dbxref=Genbank:WP_000875487.1;Name=WP_000875487.1;gbkey=CDS;product=protein CreA;protein_id=WP_000875487.1;transl_table=11 NZ_CP010443.1 RefSeq gene 754778 755467 . + . ID=gene738;Name=SH04_RS03705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03705;old_locus_tag=SH04_03700 NZ_CP010443.1 Protein Homology CDS 754778 755467 . + 0 ID=cds703;Parent=gene738;Dbxref=Genbank:WP_001188654.1;Name=WP_001188654.1;Note=response regulator in two-component regulatory system with CreC%3B CreB protein is phosphorylated by sensor protein phospho-CreC%3B involved in catabolic regulation;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001188654.1;transl_table=11 NZ_CP010443.1 RefSeq gene 755467 756891 . + . ID=gene739;Name=SH04_RS03710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03710;old_locus_tag=SH04_03705 NZ_CP010443.1 Protein Homology CDS 755467 756891 . + 0 ID=cds704;Parent=gene739;Dbxref=Genbank:WP_001219559.1;Name=WP_001219559.1;Note=part of a two-component regulatory system with CreB or PhoB%3B involved in catabolic regulation;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_001219559.1;transl_table=11 NZ_CP010443.1 RefSeq gene 756949 758301 . + . ID=gene740;Name=SH04_RS03715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03715;old_locus_tag=SH04_03710 NZ_CP010443.1 Protein Homology CDS 756949 758301 . + 0 ID=cds705;Parent=gene740;Dbxref=Genbank:WP_000920294.1;Name=WP_000920294.1;gbkey=CDS;product=protein CreD;protein_id=WP_000920294.1;transl_table=11 NZ_CP010443.1 RefSeq gene 758361 759077 . - . ID=gene741;Name=SH04_RS03720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03720;old_locus_tag=SH04_03715 NZ_CP010443.1 Protein Homology CDS 758361 759077 . - 0 ID=cds706;Parent=gene741;Dbxref=Genbank:WP_001194358.1;Name=WP_001194358.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001194358.1;transl_table=11 NZ_CP010443.1 RefSeq gene 759173 759313 . + . ID=gene742;Name=SH04_RS03725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03725;old_locus_tag=SH04_03720 NZ_CP010443.1 Protein Homology CDS 759173 759313 . + 0 ID=cds707;Parent=gene742;Dbxref=Genbank:WP_001303782.1;Name=WP_001303782.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303782.1;transl_table=11 NZ_CP010443.1 RefSeq gene 759713 760399 . + . ID=gene743;Name=SH04_RS03730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03730;old_locus_tag=SH04_03725 NZ_CP010443.1 Protein Homology CDS 759713 760399 . + 0 ID=cds708;Parent=gene743;Dbxref=Genbank:WP_001223132.1;Name=WP_001223132.1;Note=member of the SPOUT superfamily of methyltransferases;gbkey=CDS;product=methyltransferase;protein_id=WP_001223132.1;transl_table=11 NZ_CP010443.1 RefSeq gene 760613 760678 . + . ID=gene744;Name=thrL;gbkey=Gene;gene=thrL;gene_biotype=protein_coding;locus_tag=SH04_RS03735;old_locus_tag=SH04_03730 NZ_CP010443.1 Protein Homology CDS 760613 760678 . + 0 ID=cds709;Parent=gene744;Dbxref=Genbank:WP_001386572.1;Name=WP_001386572.1;Note=involved in threonine biosynthesis%3B controls the expression of the thrLABC operon;gbkey=CDS;gene=thrL;product=thr operon leader peptide;protein_id=WP_001386572.1;transl_table=11 NZ_CP010443.1 RefSeq gene 760760 763222 . + . ID=gene745;Name=thrA;gbkey=Gene;gene=thrA;gene_biotype=protein_coding;locus_tag=SH04_RS03740;old_locus_tag=SH04_03735 NZ_CP010443.1 Protein Homology CDS 760760 763222 . + 0 ID=cds710;Parent=gene745;Dbxref=Genbank:WP_001264707.1;Name=WP_001264707.1;Note=multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine%3B functions in a number of amino acid biosynthetic pathways;gbkey=CDS;gene=thrA;product=bifunctional aspartokinase/homoserine dehydrogenase 1;protein_id=WP_001264707.1;transl_table=11 NZ_CP010443.1 RefSeq gene 763224 764156 . + . ID=gene746;Name=SH04_RS03745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03745;old_locus_tag=SH04_03740 NZ_CP010443.1 Protein Homology CDS 763224 764156 . + 0 ID=cds711;Parent=gene746;Dbxref=Genbank:WP_000241662.1;Name=WP_000241662.1;Note=catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate;gbkey=CDS;product=homoserine kinase;protein_id=WP_000241662.1;transl_table=11 NZ_CP010443.1 RefSeq gene 764157 765443 . + . ID=gene747;Name=SH04_RS03750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03750;old_locus_tag=SH04_03745 NZ_CP010443.1 Protein Homology CDS 764157 765443 . + 0 ID=cds712;Parent=gene747;Dbxref=Genbank:WP_000781074.1;Name=WP_000781074.1;gbkey=CDS;product=threonine synthase;protein_id=WP_000781074.1;transl_table=11 NZ_CP010443.1 RefSeq gene 765511 765660 . + . ID=gene748;Name=SH04_RS03755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03755;old_locus_tag=SH04_03750 NZ_CP010443.1 Protein Homology CDS 765511 765660 . + 0 ID=cds713;Parent=gene748;Dbxref=Genbank:WP_000414154.1;Name=WP_000414154.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000414154.1;transl_table=11 NZ_CP010443.1 RefSeq gene 765657 765953 . + . ID=gene749;Name=SH04_RS03760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03760;old_locus_tag=SH04_03755 NZ_CP010443.1 Protein Homology CDS 765657 765953 . + 0 ID=cds714;Parent=gene749;Dbxref=Genbank:WP_000738719.1;Name=WP_000738719.1;gbkey=CDS;product=DUF2502 domain-containing protein;protein_id=WP_000738719.1;transl_table=11 NZ_CP010443.1 RefSeq gene 766106 766882 . - . ID=gene750;Name=SH04_RS03765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03765;old_locus_tag=SH04_03760 NZ_CP010443.1 Protein Homology CDS 766106 766882 . - 0 ID=cds715;Parent=gene750;Dbxref=Genbank:WP_000906197.1;Name=WP_000906197.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000906197.1;transl_table=11 NZ_CP010443.1 RefSeq gene 766952 768382 . - . ID=gene751;Name=SH04_RS03770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03770;old_locus_tag=SH04_03765 NZ_CP010443.1 Protein Homology CDS 766952 768382 . - 0 ID=cds716;Parent=gene751;Dbxref=Genbank:WP_001112606.1;Name=WP_001112606.1;gbkey=CDS;product=transporter;protein_id=WP_001112606.1;transl_table=11 NZ_CP010443.1 RefSeq gene 768661 769614 . + . ID=gene752;Name=SH04_RS03775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03775;old_locus_tag=SH04_03770 NZ_CP010443.1 Protein Homology CDS 768661 769614 . + 0 ID=cds717;Parent=gene752;Dbxref=Genbank:WP_000130185.1;Name=WP_000130185.1;gbkey=CDS;product=transaldolase 1;protein_id=WP_000130185.1;transl_table=11 NZ_CP010443.1 RefSeq gene 769729 770316 . + . ID=gene753;Name=mogA;gbkey=Gene;gene=mogA;gene_biotype=protein_coding;locus_tag=SH04_RS03780;old_locus_tag=SH04_03775 NZ_CP010443.1 Protein Homology CDS 769729 770316 . + 0 ID=cds718;Parent=gene753;Dbxref=Genbank:WP_001295414.1;Name=WP_001295414.1;Note=forms a trimer%3B related to eukaryotic protein gephyrin%3B functions during molybdenum cofactor biosynthesis;gbkey=CDS;gene=mogA;product=molybdopterin adenylyltransferase;protein_id=WP_001295414.1;transl_table=11 NZ_CP010443.1 RefSeq gene 770351 770917 . - . ID=gene754;Name=SH04_RS03785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03785;old_locus_tag=SH04_03780 NZ_CP010443.1 Protein Homology CDS 770351 770917 . - 0 ID=cds719;Parent=gene754;Dbxref=Genbank:WP_000528538.1;Name=WP_000528538.1;gbkey=CDS;product=succinate-acetate/proton symporter SatP;protein_id=WP_000528538.1;transl_table=11 NZ_CP010443.1 RefSeq gene 771066 771779 . - . ID=gene755;Name=SH04_RS03790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03790;old_locus_tag=SH04_03785 NZ_CP010443.1 Protein Homology CDS 771066 771779 . - 0 ID=cds720;Parent=gene755;Dbxref=Genbank:WP_001102367.1;Name=WP_001102367.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001102367.1;transl_table=11 NZ_CP010443.1 RefSeq gene 771805 772209 . - . ID=gene756;Name=SH04_RS03795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03795;old_locus_tag=SH04_03790 NZ_CP010443.1 Protein Homology CDS 771805 772209 . - 0 ID=cds721;Parent=gene756;Dbxref=Genbank:WP_000843565.1;Name=WP_000843565.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000843565.1;transl_table=11 NZ_CP010443.1 RefSeq gene 772586 774502 . + . ID=gene757;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=SH04_RS03800;old_locus_tag=SH04_03795 NZ_CP010443.1 Protein Homology CDS 772586 774502 . + 0 ID=cds722;Parent=gene757;Dbxref=Genbank:WP_000516135.1;Name=WP_000516135.1;Note=heat shock protein 70%3B assists in folding of nascent polypeptide chains%3B refolding of misfolded proteins%3B utilizes ATPase activity to help fold%3B co-chaperones are DnaJ and GrpE%3B multiple copies in some bacteria;gbkey=CDS;gene=dnaK;product=molecular chaperone DnaK;protein_id=WP_000516135.1;transl_table=11 NZ_CP010443.1 RefSeq gene 774591 775721 . + . ID=gene758;Name=SH04_RS03805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03805;old_locus_tag=SH04_03800 NZ_CP010443.1 Protein Homology CDS 774591 775721 . + 0 ID=cds723;Parent=gene758;Dbxref=Genbank:WP_001118476.1;Name=WP_001118476.1;Note=chaperone Hsp40%3B co-chaperone with DnaK%3B Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins%2C also in an autonomous%2C dnaK-independent fashion;gbkey=CDS;product=molecular chaperone DnaJ;protein_id=WP_001118476.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 775810 777155 . + . ID=id52;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 775868 776980 . + . ID=gene759;Name=SH04_RS03810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03810;old_locus_tag=SH04_03805 NZ_CP010443.1 Protein Homology CDS 775868 776980 . + 0 ID=cds724;Parent=gene759;Dbxref=Genbank:WP_001300563.1;Name=WP_001300563.1;gbkey=CDS;product=transposase;protein_id=WP_001300563.1;transl_table=11 NZ_CP010443.1 RefSeq gene 777174 777326 . - . ID=gene760;Name=SH04_RS03815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03815;old_locus_tag=SH04_03810 NZ_CP010443.1 Protein Homology CDS 777174 777326 . - 0 ID=cds725;Parent=gene760;Dbxref=Genbank:WP_000809168.1;Name=WP_000809168.1;gbkey=CDS;product=protein HokC;protein_id=WP_000809168.1;transl_table=11 NZ_CP010443.1 RefSeq gene 777912 779078 . + . ID=gene761;Name=nhaA;gbkey=Gene;gene=nhaA;gene_biotype=protein_coding;locus_tag=SH04_RS03820;old_locus_tag=SH04_03815 NZ_CP010443.1 Protein Homology CDS 777912 779078 . + 0 ID=cds726;Parent=gene761;Dbxref=Genbank:WP_000681354.1;Name=WP_000681354.1;Note=exports sodium by using the electrochemical proton gradient to allow protons into the cell%3B functions in adaptation to high salinity and alkaline pH%3B activity increases at higher pH%3B downregulated at acidic pH;gbkey=CDS;gene=nhaA;product=Na+/H+ antiporter NhaA;protein_id=WP_000681354.1;transl_table=11 NZ_CP010443.1 RefSeq gene 779144 780043 . + . ID=gene762;Name=nhaR;gbkey=Gene;gene=nhaR;gene_biotype=protein_coding;locus_tag=SH04_RS03825;old_locus_tag=SH04_03820 NZ_CP010443.1 Protein Homology CDS 779144 780043 . + 0 ID=cds727;Parent=gene762;Dbxref=Genbank:WP_001338226.1;Name=WP_001338226.1;Note=Na+/H+ antiporter regulatory protein%3B activates the genes nhaA and osmC;gbkey=CDS;gene=nhaR;product=transcriptional regulator;protein_id=WP_001338226.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 780219 780987 . + . ID=id53;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 780234 780737 . - . ID=gene763;Name=SH04_RS03830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03830;old_locus_tag=SH04_03825 NZ_CP010443.1 Protein Homology CDS 780234 780737 . - 0 ID=cds728;Parent=gene763;Dbxref=Genbank:WP_001119362.1;Name=WP_001119362.1;gbkey=CDS;product=transposase;protein_id=WP_001119362.1;transl_table=11 NZ_CP010443.1 RefSeq gene 781238 781501 . - . ID=gene764;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;locus_tag=SH04_RS03835;old_locus_tag=SH04_03830 NZ_CP010443.1 Protein Homology CDS 781238 781501 . - 0 ID=cds729;Parent=gene764;Dbxref=Genbank:WP_001274021.1;Name=WP_001274021.1;Note=binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase;gbkey=CDS;gene=rpsT;product=30S ribosomal protein S20;protein_id=WP_001274021.1;transl_table=11 NZ_CP010443.1 RefSeq gene 781604 781822 . + . ID=gene765;Name=SH04_RS03840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03840;old_locus_tag=SH04_03835 NZ_CP010443.1 Protein Homology CDS 781604 781822 . + 0 ID=cds730;Parent=gene765;Dbxref=Genbank:WP_001300728.1;Name=WP_001300728.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001300728.1;transl_table=11 NZ_CP010443.1 RefSeq gene 781830 782771 . + . ID=gene766;Name=SH04_RS03845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03845;old_locus_tag=SH04_03840 NZ_CP010443.1 Protein Homology CDS 781830 782771 . + 0 ID=cds731;Parent=gene766;Dbxref=Genbank:WP_000767329.1;Name=WP_000767329.1;gbkey=CDS;product=bifunctional riboflavin kinase/FMN adenylyltransferase;protein_id=WP_000767329.1;transl_table=11 NZ_CP010443.1 RefSeq gene 782814 785630 . + . ID=gene767;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;locus_tag=SH04_RS03850;old_locus_tag=SH04_03845 NZ_CP010443.1 Protein Homology CDS 782814 785630 . + 0 ID=cds732;Parent=gene767;Dbxref=Genbank:WP_001286857.1;Name=WP_001286857.1;Note=IleRS%3B catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile)%3B since isoleucine and other amino acids such as valine are similar%2C there are additional editing function in this enzyme%3B one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile)%3B there are two active sites%2C one for aminoacylation and one for editing%3B class-I aminoacyl-tRNA synthetase family type 1 subfamily%3B some organisms carry two different copies of this enzyme;gbkey=CDS;gene=ileS;product=isoleucine--tRNA ligase;protein_id=WP_001286857.1;transl_table=11 NZ_CP010443.1 RefSeq gene 785630 786124 . + . ID=gene768;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;locus_tag=SH04_RS03855;old_locus_tag=SH04_03850 NZ_CP010443.1 Protein Homology CDS 785630 786124 . + 0 ID=cds733;Parent=gene768;Dbxref=Genbank:WP_000083372.1;Name=WP_000083372.1;Note=lipoprotein signal peptidase%3B integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis;gbkey=CDS;gene=lspA;product=lipoprotein signal peptidase;protein_id=WP_000083372.1;transl_table=11 NZ_CP010443.1 RefSeq gene 786249 786698 . + . ID=gene769;Name=SH04_RS03860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03860;old_locus_tag=SH04_03855 NZ_CP010443.1 Protein Homology CDS 786249 786698 . + 0 ID=cds734;Parent=gene769;Dbxref=Genbank:WP_000004655.1;Name=WP_000004655.1;Note=rotamase%3B accelerates isomerization of the peptidyl prolyl bond%2C involved in the folding of proteases;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_000004655.1;transl_table=11 NZ_CP010443.1 RefSeq gene 786700 787650 . + . ID=gene770;Name=ispH;gbkey=Gene;gene=ispH;gene_biotype=protein_coding;gene_synonym=lytB;locus_tag=SH04_RS03865;old_locus_tag=SH04_03860 NZ_CP010443.1 Protein Homology CDS 786700 787650 . + 0 ID=cds735;Parent=gene770;Dbxref=Genbank:WP_001166395.1;Name=WP_001166395.1;Note=catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP)%3B functions in the nonmevalonate isoprenoid biosynthesis pathway;gbkey=CDS;gene=ispH;product=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=WP_001166395.1;transl_table=11 NZ_CP010443.1 RefSeq gene 787716 788630 . + . ID=gene771;Name=SH04_RS03870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03870;old_locus_tag=SH04_03865 NZ_CP010443.1 Protein Homology CDS 787716 788630 . + 0 ID=cds736;Parent=gene771;Dbxref=Genbank:WP_001239142.1;Name=WP_001239142.1;Note=catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides;gbkey=CDS;product=non-specific ribonucleoside hydrolase RihC;protein_id=WP_001239142.1;transl_table=11 NZ_CP010443.1 RefSeq gene 788797 789618 . + . ID=gene772;Name=SH04_RS03875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03875;old_locus_tag=SH04_03870 NZ_CP010443.1 Protein Homology CDS 788797 789618 . + 0 ID=cds737;Parent=gene772;Dbxref=Genbank:WP_000543604.1;Name=WP_000543604.1;Note=catalyzes the reduction of 2%2C3-dihydrodipicolinate to 2%2C3%2C4%2C5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis;gbkey=CDS;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=WP_000543604.1;transl_table=11 NZ_CP010443.1 RefSeq gene 789660 789827 . - . ID=gene773;Name=SH04_RS03880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03880;old_locus_tag=SH04_03875 NZ_CP010443.1 Protein Homology CDS 789660 789827 . - 0 ID=cds738;Parent=gene773;Dbxref=Genbank:WP_000544444.1;Name=WP_000544444.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000544444.1;transl_table=11 NZ_CP010443.1 RefSeq gene 789861 789956 . - . ID=gene774;Name=SH04_RS03885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03885;old_locus_tag=SH04_03880 NZ_CP010443.1 Protein Homology CDS 789861 789956 . - 0 ID=cds739;Parent=gene774;Dbxref=Genbank:WP_000501020.1;Name=WP_000501020.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000501020.1;transl_table=11 NZ_CP010443.1 RefSeq gene 790074 791222 . + . ID=gene775;Name=SH04_RS03890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03890;old_locus_tag=SH04_03885 NZ_CP010443.1 Protein Homology CDS 790074 791222 . + 0 ID=cds740;Parent=gene775;Dbxref=Genbank:WP_000597260.1;Name=WP_000597260.1;Note=catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways%3B forms an octamer composed of four CarAB dimers;gbkey=CDS;product=carbamoyl-phosphate synthase small chain;protein_id=WP_000597260.1;transl_table=11 NZ_CP010443.1 RefSeq gene 791240 794461 . + . ID=gene776;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;locus_tag=SH04_RS03895;old_locus_tag=SH04_03890 NZ_CP010443.1 Protein Homology CDS 791240 794461 . + 0 ID=cds741;Parent=gene776;Dbxref=Genbank:WP_001126348.1;Name=WP_001126348.1;Note=four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate%3B CarB is responsible for the amidotransferase activity;gbkey=CDS;gene=carB;product=carbamoyl-phosphate synthase large chain;protein_id=WP_001126348.1;transl_table=11 NZ_CP010443.1 RefSeq gene 794509 794688 . - . ID=gene777;Name=SH04_RS03900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03900;old_locus_tag=SH04_03895 NZ_CP010443.1 Protein Homology CDS 794509 794688 . - 0 ID=cds742;Parent=gene777;Dbxref=Genbank:WP_000196533.1;Name=WP_000196533.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000196533.1;transl_table=11 NZ_CP010443.1 RefSeq gene 794723 795118 . + . ID=gene778;Name=SH04_RS03905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03905;old_locus_tag=SH04_03900 NZ_CP010443.1 Protein Homology CDS 794723 795118 . + 0 ID=cds743;Parent=gene778;Dbxref=Genbank:WP_000333125.1;Name=WP_000333125.1;Note=regulator of carnitine metabolism%3B induces the caiTABCDE and fixABCX operons;gbkey=CDS;product=transcriptional activatory protein CaiF;protein_id=WP_000333125.1;transl_table=11 NZ_CP010443.1 RefSeq gene 795204 795794 . - . ID=gene779;Name=SH04_RS03910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03910;old_locus_tag=SH04_03905 NZ_CP010443.1 Protein Homology CDS 795204 795794 . - 0 ID=cds744;Parent=gene779;Dbxref=Genbank:WP_000122871.1;Name=WP_000122871.1;Note=involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities;gbkey=CDS;product=carnitine operon protein CaiE;protein_id=WP_000122871.1;transl_table=11 NZ_CP010443.1 RefSeq gene 795800 796585 . - . ID=gene780;Name=SH04_RS03915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03915;old_locus_tag=SH04_03910 NZ_CP010443.1 Protein Homology CDS 795800 796585 . - 0 ID=cds745;Parent=gene780;Dbxref=Genbank:WP_001295419.1;Name=WP_001295419.1;Note=catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA;gbkey=CDS;product=carnitinyl-CoA dehydratase;protein_id=WP_001295419.1;transl_table=11 NZ_CP010443.1 RefSeq gene 796694 798247 . - . ID=gene781;Name=caiC;gbkey=Gene;gene=caiC;gene_biotype=protein_coding;locus_tag=SH04_RS03920;old_locus_tag=SH04_03915 NZ_CP010443.1 Protein Homology CDS 796694 798247 . - 0 ID=cds746;Parent=gene781;Dbxref=Genbank:WP_001350478.1;Name=WP_001350478.1;gbkey=CDS;gene=caiC;product=crotonobetaine/carnitine-CoA ligase;protein_id=WP_001350478.1;transl_table=11 NZ_CP010443.1 RefSeq gene 798321 799538 . - . ID=gene782;Name=SH04_RS03925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03925;old_locus_tag=SH04_03920 NZ_CP010443.1 Protein Homology CDS 798321 799538 . - 0 ID=cds747;Parent=gene782;Dbxref=Genbank:WP_000349936.1;Name=WP_000349936.1;Note=catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA%2C also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine;gbkey=CDS;product=L-carnitine CoA-transferase;protein_id=WP_000349936.1;transl_table=11 NZ_CP010443.1 RefSeq gene 799667 800809 . - . ID=gene783;Name=SH04_RS03930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03930;old_locus_tag=SH04_03925 NZ_CP010443.1 Protein Homology CDS 799667 800809 . - 0 ID=cds748;Parent=gene783;Dbxref=Genbank:WP_000347117.1;Name=WP_000347117.1;Note=catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA;gbkey=CDS;product=crotonobetainyl-CoA dehydrogenase;protein_id=WP_000347117.1;transl_table=11 NZ_CP010443.1 RefSeq gene 800840 802354 . - . ID=gene784;Name=SH04_RS03935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03935;old_locus_tag=SH04_03930 NZ_CP010443.1 Protein Homology CDS 800840 802354 . - 0 ID=cds749;Parent=gene784;Dbxref=Genbank:WP_000787103.1;Name=WP_000787103.1;Note=catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism;gbkey=CDS;product=L-carnitine/gamma-butyrobetaine antiporter;protein_id=WP_000787103.1;transl_table=11 NZ_CP010443.1 RefSeq gene 802826 803596 . + . ID=gene785;Name=SH04_RS03940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03940;old_locus_tag=SH04_03935 NZ_CP010443.1 Protein Homology CDS 802826 803596 . + 0 ID=cds750;Parent=gene785;Dbxref=Genbank:WP_000692204.1;Name=WP_000692204.1;Note=required for anaerobic carnitine reduction%2C may act to transfer electrons to crotonobetaine reductase;gbkey=CDS;product=protein FixA;protein_id=WP_000692204.1;transl_table=11 NZ_CP010443.1 RefSeq gene 803611 804552 . + . ID=gene786;Name=SH04_RS03945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03945;old_locus_tag=SH04_03940 NZ_CP010443.1 Protein Homology CDS 803611 804552 . + 0 ID=cds751;Parent=gene786;Dbxref=Genbank:WP_001091499.1;Name=WP_001091499.1;gbkey=CDS;product=protein FixB;protein_id=WP_001091499.1;transl_table=11 NZ_CP010443.1 RefSeq gene 804603 805889 . + . ID=gene787;Name=SH04_RS03950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03950;old_locus_tag=SH04_03945 NZ_CP010443.1 Protein Homology CDS 804603 805889 . + 0 ID=cds752;Parent=gene787;Dbxref=Genbank:WP_001287715.1;Name=WP_001287715.1;Note=FAD/NAD(P)-binding domain%3B possibly part of an electron transfer system required for anaerobic carnitine reduction;gbkey=CDS;product=protein FixC;protein_id=WP_001287715.1;transl_table=11 NZ_CP010443.1 RefSeq gene 805886 806173 . + . ID=gene788;Name=SH04_RS03955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03955;old_locus_tag=SH04_03950 NZ_CP010443.1 Protein Homology CDS 805886 806173 . + 0 ID=cds753;Parent=gene788;Dbxref=Genbank:WP_000203741.1;Name=WP_000203741.1;gbkey=CDS;product=ferredoxin-like protein FixX;protein_id=WP_000203741.1;transl_table=11 NZ_CP010443.1 RefSeq gene 806230 807561 . + . ID=gene789;Name=SH04_RS03960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03960;old_locus_tag=SH04_03955 NZ_CP010443.1 Protein Homology CDS 806230 807561 . + 0 ID=cds754;Parent=gene789;Dbxref=Genbank:WP_001183198.1;Name=WP_001183198.1;gbkey=CDS;product=transporter;protein_id=WP_001183198.1;transl_table=11 NZ_CP010443.1 RefSeq gene 807669 808199 . + . ID=gene790;Name=SH04_RS03965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03965;old_locus_tag=SH04_03960 NZ_CP010443.1 Protein Homology CDS 807669 808199 . + 0 ID=cds755;Parent=gene790;Dbxref=Genbank:WP_000600725.1;Name=WP_000600725.1;Note=Required for full activity of KefC%2C a potassium-proton antiporter;gbkey=CDS;product=glutathione-regulated potassium-efflux system ancillary protein KefF;protein_id=WP_000600725.1;transl_table=11 NZ_CP010443.1 RefSeq gene 808192 810054 . + . ID=gene791;Name=SH04_RS03970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS03970;old_locus_tag=SH04_03965 NZ_CP010443.1 Protein Homology CDS 808192 810054 . + 0 ID=cds756;Parent=gene791;Dbxref=Genbank:WP_000377098.1;Name=WP_000377098.1;Note=transport system that facilitates potassium-efflux;gbkey=CDS;product=glutathione-regulated potassium-efflux system protein KefC;protein_id=WP_000377098.1;transl_table=11 NZ_CP010443.1 RefSeq gene 810246 810725 . + . ID=gene792;Name=folA;gbkey=Gene;gene=folA;gene_biotype=protein_coding;locus_tag=SH04_RS03975;old_locus_tag=SH04_03970 NZ_CP010443.1 Protein Homology CDS 810246 810725 . + 0 ID=cds757;Parent=gene792;Dbxref=Genbank:WP_000624375.1;Name=WP_000624375.1;Note=catalyzes the reduction of dihydrofolate to tetrahydrofolate;gbkey=CDS;gene=folA;product=dihydrofolate reductase;protein_id=WP_000624375.1;transl_table=11 NZ_CP010443.1 RefSeq gene 810803 811645 . - . ID=gene793;Name=apaH;gbkey=Gene;gene=apaH;gene_biotype=protein_coding;locus_tag=SH04_RS03980;old_locus_tag=SH04_03975 NZ_CP010443.1 Protein Homology CDS 810803 811645 . - 0 ID=cds758;Parent=gene793;Dbxref=Genbank:WP_000257192.1;Name=WP_000257192.1;Note=hydrolyzes P(1)%2CP(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP;gbkey=CDS;gene=apaH;product=diadenosine tetraphosphatase;protein_id=WP_000257192.1;transl_table=11 NZ_CP010443.1 RefSeq gene 811652 812029 . - . ID=gene794;Name=apaG;gbkey=Gene;gene=apaG;gene_biotype=protein_coding;locus_tag=SH04_RS03985;old_locus_tag=SH04_03980 NZ_CP010443.1 Protein Homology CDS 811652 812029 . - 0 ID=cds759;Parent=gene794;Dbxref=Genbank:WP_000610901.1;Name=WP_000610901.1;Note=protein associated with Co2+ and Mg2+ efflux;gbkey=CDS;gene=apaG;product=protein ApaG;protein_id=WP_000610901.1;transl_table=11 NZ_CP010443.1 RefSeq gene 812032 812853 . - . ID=gene795;Name=ksgA;gbkey=Gene;gene=ksgA;gene_biotype=protein_coding;locus_tag=SH04_RS03990;old_locus_tag=SH04_03985 NZ_CP010443.1 Protein Homology CDS 812032 812853 . - 0 ID=cds760;Parent=gene795;Dbxref=Genbank:WP_001065381.1;Name=WP_001065381.1;Note=in Escherichia coli this enzyme catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA%3B mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin%3B members of this protein family have secondary functions;gbkey=CDS;gene=ksgA;product=ribosomal RNA small subunit methyltransferase A;protein_id=WP_001065381.1;transl_table=11 NZ_CP010443.1 RefSeq gene 812850 813839 . - . ID=gene796;Name=pdxA;gbkey=Gene;gene=pdxA;gene_biotype=protein_coding;locus_tag=SH04_RS03995;old_locus_tag=SH04_03990 NZ_CP010443.1 Protein Homology CDS 812850 813839 . - 0 ID=cds761;Parent=gene796;Dbxref=Genbank:WP_000241277.1;Name=WP_000241277.1;Note=catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate);gbkey=CDS;gene=pdxA;product=4-hydroxythreonine-4-phosphate dehydrogenase;protein_id=WP_000241277.1;transl_table=11 NZ_CP010443.1 RefSeq gene 813839 815125 . - . ID=gene797;Name=SH04_RS04000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04000;old_locus_tag=SH04_03995 NZ_CP010443.1 Protein Homology CDS 813839 815125 . - 0 ID=cds762;Parent=gene797;Dbxref=Genbank:WP_000800457.1;Name=WP_000800457.1;Note=Chaperone involved in the folding of extracytoplasmic proteins%2C especially OmpA%2C OmpF and LamB;gbkey=CDS;product=chaperone SurA;protein_id=WP_000800457.1;transl_table=11 NZ_CP010443.1 RefSeq gene 815178 817532 . - . ID=gene798;Name=SH04_RS04005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04005;old_locus_tag=SH04_04000 NZ_CP010443.1 Protein Homology CDS 815178 817532 . - 0 ID=cds763;Parent=gene798;Dbxref=Genbank:WP_000746151.1;Name=WP_000746151.1;Note=is involved in outer membrane permeability;gbkey=CDS;product=LPS-assembly protein LptD;protein_id=WP_000746151.1;transl_table=11 NZ_CP010443.1 RefSeq gene 817787 818602 . + . ID=gene799;Name=djlA;gbkey=Gene;gene=djlA;gene_biotype=protein_coding;locus_tag=SH04_RS04010;old_locus_tag=SH04_04005 NZ_CP010443.1 Protein Homology CDS 817787 818602 . + 0 ID=cds764;Parent=gene799;Dbxref=Genbank:WP_001200579.1;Name=WP_001200579.1;Note=functions as a co-chaperone with DnaK%3B involved in regulation of colanic acid capsule%3B inner membrane protein%3B dimerized via transmembrane domain%3B J-like domain is cytoplasmic and can functionally substitute for DnaJ%3B stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system;gbkey=CDS;gene=djlA;product=dnaJ-like protein DjlA;protein_id=WP_001200579.1;transl_table=11 NZ_CP010443.1 RefSeq gene 818897 819702 . + . ID=gene800;Name=SH04_RS04015;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS04015;pseudo=true NZ_CP010443.1 Protein Homology CDS 818897 819702 . + 0 ID=cds765;Parent=gene800;exception=annotated by transcript or proteomic data;gbkey=CDS;product=UDP pyrophosphate phosphatase;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 820110 820769 . - . ID=gene801;Name=SH04_RS04020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04020;old_locus_tag=SH04_04015 NZ_CP010443.1 Protein Homology CDS 820110 820769 . - 0 ID=cds766;Parent=gene801;Dbxref=Genbank:WP_000525176.1;Name=WP_000525176.1;Note=catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs;gbkey=CDS;product=ribosomal large subunit pseudouridine synthase A;protein_id=WP_000525176.1;transl_table=11 NZ_CP010443.1 RefSeq gene 820781 823687 . - . ID=gene802;Name=SH04_RS04025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04025;old_locus_tag=SH04_04020 NZ_CP010443.1 Protein Homology CDS 820781 823687 . - 0 ID=cds767;Parent=gene802;Dbxref=Genbank:WP_001117011.1;Name=WP_001117011.1;Note=transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP%2C when it is trapped or immobilized on tightly supercoiled DNA;gbkey=CDS;product=RNA polymerase-associated protein RapA;protein_id=WP_001117011.1;transl_table=11 NZ_CP010443.1 RefSeq gene 823852 826203 . - . ID=gene803;Name=SH04_RS04030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04030;old_locus_tag=SH04_04025 NZ_CP010443.1 Protein Homology CDS 823852 826203 . - 0 ID=cds768;Parent=gene803;Dbxref=Genbank:WP_000035670.1;Name=WP_000035670.1;Note=Has polymerase%2C DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C;gbkey=CDS;product=DNA polymerase II;protein_id=WP_000035670.1;transl_table=11 NZ_CP010443.1 RefSeq gene 826278 826973 . - . ID=gene804;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=SH04_RS04035;old_locus_tag=SH04_04030 NZ_CP010443.1 Protein Homology CDS 826278 826973 . - 0 ID=cds769;Parent=gene804;Dbxref=Genbank:WP_000888666.1;Name=WP_000888666.1;Note=catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate%3B links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source;gbkey=CDS;gene=araD;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_000888666.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 826987 827238 . + . ID=id54;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 827258 828760 . - . ID=gene805;Name=SH04_RS04040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04040;old_locus_tag=SH04_04035 NZ_CP010443.1 Protein Homology CDS 827258 828760 . - 0 ID=cds770;Parent=gene805;Dbxref=Genbank:WP_000151748.1;Name=WP_000151748.1;Note=catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism;gbkey=CDS;product=L-arabinose isomerase;protein_id=WP_000151748.1;transl_table=11 NZ_CP010443.1 RefSeq gene 828771 830471 . - . ID=gene806;Name=SH04_RS04045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04045;old_locus_tag=SH04_04040 NZ_CP010443.1 Protein Homology CDS 828771 830471 . - 0 ID=cds771;Parent=gene806;Dbxref=Genbank:WP_000951856.1;Name=WP_000951856.1;Note=catalyzes the phosphorylation of ribulose to ribulose 5-phosphate;gbkey=CDS;product=ribulokinase;protein_id=WP_000951856.1;transl_table=11 NZ_CP010443.1 RefSeq gene 830810 831688 . + . ID=gene807;Name=SH04_RS04050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04050;old_locus_tag=SH04_04045 NZ_CP010443.1 Protein Homology CDS 830810 831688 . + 0 ID=cds772;Parent=gene807;Dbxref=Genbank:WP_001300811.1;Name=WP_001300811.1;Note=positive and negative regulator%3B regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose;gbkey=CDS;product=arabinose operon regulatory protein;protein_id=WP_001300811.1;transl_table=11 NZ_CP010443.1 RefSeq gene 831774 832538 . + . ID=gene808;Name=SH04_RS04055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04055;old_locus_tag=SH04_04050 NZ_CP010443.1 Protein Homology CDS 831774 832538 . + 0 ID=cds773;Parent=gene808;Dbxref=Genbank:WP_001148390.1;Name=WP_001148390.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001148390.1;transl_table=11 NZ_CP010443.1 RefSeq gene 832652 833350 . - . ID=gene809;Name=thiQ;gbkey=Gene;gene=thiQ;gene_biotype=protein_coding;locus_tag=SH04_RS04060;old_locus_tag=SH04_04055 NZ_CP010443.1 Protein Homology CDS 832652 833350 . - 0 ID=cds774;Parent=gene809;Dbxref=Genbank:WP_000916281.1;Name=WP_000916281.1;Note=with TbpA and ThiP is part of the thiamine and TPP transport system;gbkey=CDS;gene=thiQ;product=thiamine import ATP-binding protein ThiQ;protein_id=WP_000916281.1;transl_table=11 NZ_CP010443.1 RefSeq gene 833334 834944 . - . ID=gene810;Name=thiP;gbkey=Gene;gene=thiP;gene_biotype=protein_coding;gene_synonym=sfuB;locus_tag=SH04_RS04065;old_locus_tag=SH04_04060 NZ_CP010443.1 Protein Homology CDS 833334 834944 . - 0 ID=cds775;Parent=gene810;Dbxref=Genbank:WP_000235721.1;Name=WP_000235721.1;Note=permease%3B with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell%3B repressed in presence of exogenous thiamine;gbkey=CDS;gene=thiP;product=thiamine ABC transporter permease;protein_id=WP_000235721.1;transl_table=11 NZ_CP010443.1 RefSeq gene 834920 835903 . - . ID=gene811;Name=tbpA;gbkey=Gene;gene=tbpA;gene_biotype=protein_coding;locus_tag=SH04_RS04070;old_locus_tag=SH04_04065 NZ_CP010443.1 Protein Homology CDS 834920 835903 . - 0 ID=cds776;Parent=gene811;Dbxref=Genbank:WP_001301364.1;Name=WP_001301364.1;Note=part of the thiamine and TPP transport system tbpA-thiPQ;gbkey=CDS;gene=tbpA;product=thiamine-binding periplasmic protein;protein_id=WP_001301364.1;transl_table=11 NZ_CP010443.1 RefSeq gene 836067 837722 . - . ID=gene812;Name=SH04_RS04075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04075;old_locus_tag=SH04_04070 NZ_CP010443.1 Protein Homology CDS 836067 837722 . - 0 ID=cds777;Parent=gene812;Dbxref=Genbank:WP_001138624.1;Name=WP_001138624.1;Note=activates sgrS under glucose-phosphate stress conditions;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001138624.1;transl_table=11 NZ_CP010443.1 RefSeq gene 837811 837942 . + . ID=gene813;Name=SH04_RS04080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04080;old_locus_tag=SH04_04075 NZ_CP010443.1 Protein Homology CDS 837811 837942 . + 0 ID=cds778;Parent=gene813;Dbxref=Genbank:WP_001248770.1;Name=WP_001248770.1;gbkey=CDS;product=inhibitor of glucose uptake;protein_id=WP_001248770.1;transl_table=11 NZ_CP010443.1 RefSeq gene 838044 839222 . + . ID=gene814;Name=SH04_RS04085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04085;old_locus_tag=SH04_04080 NZ_CP010443.1 Protein Homology CDS 838044 839222 . + 0 ID=cds779;Parent=gene814;Dbxref=Genbank:WP_000637847.1;Name=WP_000637847.1;gbkey=CDS;product=sugar efflux transporter A;protein_id=WP_000637847.1;transl_table=11 NZ_CP010443.1 RefSeq gene 839271 839876 . - . ID=gene815;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=SH04_RS04090;old_locus_tag=SH04_04085 NZ_CP010443.1 Protein Homology CDS 839271 839876 . - 0 ID=cds780;Parent=gene815;Dbxref=Genbank:WP_000818228.1;Name=WP_000818228.1;Note=catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis%3B forms a heterodimer of LeuC/D;gbkey=CDS;gene=leuD;product=3-isopropylmalate dehydratase small subunit;protein_id=WP_000818228.1;transl_table=11 NZ_CP010443.1 RefSeq gene 839887 841287 . - . ID=gene816;Name=SH04_RS04095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04095;old_locus_tag=SH04_04090 NZ_CP010443.1 Protein Homology CDS 839887 841287 . - 0 ID=cds781;Parent=gene816;Dbxref=Genbank:WP_001140652.1;Name=WP_001140652.1;Note=dehydratase component%2C catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate;gbkey=CDS;product=3-isopropylmalate dehydratase large subunit;protein_id=WP_001140652.1;transl_table=11 NZ_CP010443.1 RefSeq gene 841290 842381 . - . ID=gene817;Name=SH04_RS04100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04100;old_locus_tag=SH04_04095 NZ_CP010443.1 Protein Homology CDS 841290 842381 . - 0 ID=cds782;Parent=gene817;Dbxref=Genbank:WP_000042353.1;Name=WP_000042353.1;gbkey=CDS;product=3-isopropylmalate dehydrogenase;protein_id=WP_000042353.1;transl_table=11 NZ_CP010443.1 RefSeq gene 842381 843952 . - . ID=gene818;Name=SH04_RS04105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04105;old_locus_tag=SH04_04100 NZ_CP010443.1 Protein Homology CDS 842381 843952 . - 0 ID=cds783;Parent=gene818;Dbxref=Genbank:WP_000082850.1;Name=WP_000082850.1;gbkey=CDS;product=2-isopropylmalate synthase;protein_id=WP_000082850.1;transl_table=11 NZ_CP010443.1 RefSeq gene 844045 844131 . - . ID=gene819;Name=SH04_RS04110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04110;old_locus_tag=SH04_04105 NZ_CP010443.1 Protein Homology CDS 844045 844131 . - 0 ID=cds784;Parent=gene819;Dbxref=Genbank:WP_001300467.1;Name=WP_001300467.1;Note=involved in attenuation control of the leuABCD operon in leucine biosynthesis;gbkey=CDS;product=leu operon leader peptide;protein_id=WP_001300467.1;transl_table=11 NZ_CP010443.1 RefSeq gene 844791 845735 . + . ID=gene820;Name=leuO;gbkey=Gene;gene=leuO;gene_biotype=protein_coding;locus_tag=SH04_RS04115;old_locus_tag=SH04_04110 NZ_CP010443.1 Protein Homology CDS 844791 845735 . + 0 ID=cds785;Parent=gene820;Dbxref=Genbank:WP_001115472.1;Name=WP_001115472.1;Note=activator for leuABCD operon%3B member of LysR family of transcriptional activators;gbkey=CDS;gene=leuO;product=transcriptional regulator;protein_id=WP_001115472.1;transl_table=11 NZ_CP010443.1 RefSeq gene 846053 847777 . + . ID=gene821;Name=SH04_RS04120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04120;old_locus_tag=SH04_04115 NZ_CP010443.1 Protein Homology CDS 846053 847777 . + 0 ID=cds786;Parent=gene821;Dbxref=Genbank:WP_001295534.1;Name=WP_001295534.1;Note=catalyzes the formation of 2-acetolactate from pyruvate%2C leucine sensitive;gbkey=CDS;product=acetolactate synthase isozyme 3 large subunit;protein_id=WP_001295534.1;transl_table=11 NZ_CP010443.1 RefSeq gene 847780 848271 . + . ID=gene822;Name=ilvH;gbkey=Gene;gene=ilvH;gene_biotype=protein_coding;locus_tag=SH04_RS04125;old_locus_tag=SH04_04120 NZ_CP010443.1 Protein Homology CDS 847780 848271 . + 0 ID=cds787;Parent=gene822;Dbxref=Genbank:WP_001300383.1;Name=WP_001300383.1;Note=with IlvI catalyzes the formation of 2-acetolactate from pyruvate%2C the small subunit is required for full activity and valine sensitivity%3B E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates%2C valine sensitivity and affinity for cofactors%3B also known as acetolactate synthase 3 small subunit;gbkey=CDS;gene=ilvH;product=acetolactate synthase isozyme 3 small subunit;protein_id=WP_001300383.1;transl_table=11 NZ_CP010443.1 RefSeq gene 848283 848369 . + . ID=gene823;Name=SH04_RS04130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04130;old_locus_tag=SH04_04125 NZ_CP010443.1 Protein Homology CDS 848283 848369 . + 0 ID=cds788;Parent=gene823;Dbxref=Genbank:WP_001303787.1;Name=WP_001303787.1;gbkey=CDS;product=fruR/shl operon leader peptide;protein_id=WP_001303787.1;transl_table=11 NZ_CP010443.1 RefSeq gene 848451 849455 . + . ID=gene824;Name=SH04_RS04135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04135;old_locus_tag=SH04_04130 NZ_CP010443.1 Protein Homology CDS 848451 849455 . + 0 ID=cds789;Parent=gene824;Dbxref=Genbank:WP_000762401.1;Name=WP_000762401.1;Note=binds D-fructose as an inducer%3B involved in regulation of operons for central pathways of carbon metabolism;gbkey=CDS;product=catabolite repressor/activator;protein_id=WP_000762401.1;transl_table=11 NZ_CP010443.1 RefSeq gene 850057 850515 . + . ID=gene825;Name=SH04_RS04140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04140;old_locus_tag=SH04_04135 NZ_CP010443.1 Protein Homology CDS 850057 850515 . + 0 ID=cds790;Parent=gene825;Dbxref=Genbank:WP_001295533.1;Name=WP_001295533.1;Note=MraZ%3B UPF0040%3B crystal structure shows similarity to AbrB;gbkey=CDS;product=transcriptional regulator MraZ;protein_id=WP_001295533.1;transl_table=11 NZ_CP010443.1 RefSeq gene 850517 851458 . + . ID=gene826;Name=SH04_RS04145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04145;old_locus_tag=SH04_04140 NZ_CP010443.1 Protein Homology CDS 850517 851458 . + 0 ID=cds791;Parent=gene826;Dbxref=Genbank:WP_000970479.1;Name=WP_000970479.1;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase H;protein_id=WP_000970479.1;transl_table=11 NZ_CP010443.1 RefSeq gene 851455 851820 . + . ID=gene827;Name=SH04_RS04150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04150;old_locus_tag=SH04_04145 NZ_CP010443.1 Protein Homology CDS 851455 851820 . + 0 ID=cds792;Parent=gene827;Dbxref=Genbank:WP_000625658.1;Name=WP_000625658.1;Note=membrane bound cell division protein at septum containing leucine zipper motif;gbkey=CDS;product=cell division protein FtsL;protein_id=WP_000625658.1;transl_table=11 NZ_CP010443.1 RefSeq gene 851836 853602 . + . ID=gene828;Name=SH04_RS04155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04155;old_locus_tag=SH04_04150 NZ_CP010443.1 Protein Homology CDS 851836 853602 . + 0 ID=cds793;Parent=gene828;Dbxref=Genbank:WP_000642196.1;Name=WP_000642196.1;Note=penicillin-binding protein 3%3B transpeptidase involved in septal peptidoglycan synthesis;gbkey=CDS;product=peptidoglycan synthase FtsI;protein_id=WP_000642196.1;transl_table=11 NZ_CP010443.1 RefSeq gene 853589 855076 . + . ID=gene829;Name=murE;gbkey=Gene;gene=murE;gene_biotype=protein_coding;locus_tag=SH04_RS04160;old_locus_tag=SH04_04155 NZ_CP010443.1 Protein Homology CDS 853589 855076 . + 0 ID=cds794;Parent=gene829;Dbxref=Genbank:WP_000775093.1;Name=WP_000775093.1;Note=involved in cell wall formation%3B peptidoglycan synthesis%3B cytoplasmic enzyme%3B catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate;gbkey=CDS;gene=murE;product=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase;protein_id=WP_000775093.1;transl_table=11 NZ_CP010443.1 RefSeq gene 855073 856431 . + . ID=gene830;Name=murF;gbkey=Gene;gene=murF;gene_biotype=protein_coding;locus_tag=SH04_RS04165;old_locus_tag=SH04_04160 NZ_CP010443.1 Protein Homology CDS 855073 856431 . + 0 ID=cds795;Parent=gene830;Dbxref=Genbank:WP_000626685.1;Name=WP_000626685.1;gbkey=CDS;gene=murF;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=WP_000626685.1;transl_table=11 NZ_CP010443.1 RefSeq gene 856425 857507 . + . ID=gene831;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=SH04_RS04170;old_locus_tag=SH04_04165 NZ_CP010443.1 Protein Homology CDS 856425 857507 . + 0 ID=cds796;Parent=gene831;Dbxref=Genbank:WP_000964131.1;Name=WP_000964131.1;Note=First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan;gbkey=CDS;gene=mraY;product=phospho-N-acetylmuramoyl-pentapeptide transferase;protein_id=WP_000964131.1;transl_table=11 NZ_CP010443.1 RefSeq gene 857510 858826 . + . ID=gene832;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=SH04_RS04175;old_locus_tag=SH04_04170 NZ_CP010443.1 Protein Homology CDS 857510 858826 . + 0 ID=cds797;Parent=gene832;Dbxref=Genbank:WP_000796481.1;Name=WP_000796481.1;Note=UDP-N-acetylmuramoylalanine--D-glutamate ligase%3B involved in peptidoglycan biosynthesis%3B cytoplasmic%3B catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation;gbkey=CDS;gene=murD;product=UDP-N-acetylmuramoylalanine--D-glutamate ligase;protein_id=WP_000796481.1;transl_table=11 NZ_CP010443.1 RefSeq gene 858826 860070 . + . ID=gene833;Name=SH04_RS04180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04180;old_locus_tag=SH04_04175 NZ_CP010443.1 Protein Homology CDS 858826 860070 . + 0 ID=cds798;Parent=gene833;Dbxref=Genbank:WP_001295532.1;Name=WP_001295532.1;gbkey=CDS;product=lipid II flippase FtsW;protein_id=WP_001295532.1;transl_table=11 NZ_CP010443.1 RefSeq gene 860067 861134 . + . ID=gene834;Name=murG;gbkey=Gene;gene=murG;gene_biotype=protein_coding;locus_tag=SH04_RS04185;old_locus_tag=SH04_04180 NZ_CP010443.1 Protein Homology CDS 860067 861134 . + 0 ID=cds799;Parent=gene834;Dbxref=Genbank:WP_000016560.1;Name=WP_000016560.1;Note=N-acetylglucosaminyl transferase%3B UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase%3B involved in cell wall formation%3B inner membrane-associated%3B last step of peptidoglycan synthesis;gbkey=CDS;gene=murG;product=UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase;protein_id=WP_000016560.1;transl_table=11 NZ_CP010443.1 RefSeq gene 861188 862663 . + . ID=gene835;Name=SH04_RS04190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04190;old_locus_tag=SH04_04185 NZ_CP010443.1 Protein Homology CDS 861188 862663 . + 0 ID=cds800;Parent=gene835;Dbxref=Genbank:WP_001096049.1;Name=WP_001096049.1;gbkey=CDS;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=WP_001096049.1;transl_table=11 NZ_CP010443.1 RefSeq gene 862656 863576 . + . ID=gene836;Name=ddl;gbkey=Gene;gene=ddl;gene_biotype=protein_coding;locus_tag=SH04_RS04195;old_locus_tag=SH04_04190 NZ_CP010443.1 Protein Homology CDS 862656 863576 . + 0 ID=cds801;Parent=gene836;Dbxref=Genbank:WP_000130056.1;Name=WP_000130056.1;Note=D-alanine--D-alanine ligase%3B DdlA%3B DdlB%3B cytoplasmic%3B catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis%3B there are two forms of this enzyme in Escherichia coli;gbkey=CDS;gene=ddl;product=D-alanine--D-alanine ligase B;protein_id=WP_000130056.1;transl_table=11 NZ_CP010443.1 RefSeq gene 863578 864408 . + . ID=gene837;Name=SH04_RS04200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04200;old_locus_tag=SH04_04195 NZ_CP010443.1 Protein Homology CDS 863578 864408 . + 0 ID=cds802;Parent=gene837;Dbxref=Genbank:WP_000075748.1;Name=WP_000075748.1;Note=involved in septum formation;gbkey=CDS;product=cell division protein FtsQ;protein_id=WP_000075748.1;transl_table=11 NZ_CP010443.1 RefSeq gene 864405 865667 . + . ID=gene838;Name=ftsA;gbkey=Gene;gene=ftsA;gene_biotype=protein_coding;locus_tag=SH04_RS04205;old_locus_tag=SH04_04200 NZ_CP010443.1 Protein Homology CDS 864405 865667 . + 0 ID=cds803;Parent=gene838;Dbxref=Genbank:WP_000588474.1;Name=WP_000588474.1;Note=ATP-binding involved in recruitment of FtsK to Z ring%3B essential cell division protein%3B colocalizes with FtsZ through direct interaction to the septal ring structure%3B structurally similar to eukaryotic actin%3B binds directly to the cell membrane;gbkey=CDS;gene=ftsA;product=cell division protein FtsA;protein_id=WP_000588474.1;transl_table=11 NZ_CP010443.1 RefSeq gene 865728 866879 . + . ID=gene839;Name=SH04_RS04210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04210;old_locus_tag=SH04_04205 NZ_CP010443.1 Protein Homology CDS 865728 866879 . + 0 ID=cds804;Parent=gene839;Dbxref=Genbank:WP_000462776.1;Name=WP_000462776.1;Note=GTPase%3B similar structure to tubulin%3B forms ring-shaped polymers at the site of cell division%3B other proteins such as FtsA%2C ZipA%2C and ZapA%2C interact with and regulate FtsZ function;gbkey=CDS;product=cell division protein FtsZ;protein_id=WP_000462776.1;transl_table=11 NZ_CP010443.1 RefSeq gene 866980 867897 . + . ID=gene840;Name=lpxC;gbkey=Gene;gene=lpxC;gene_biotype=protein_coding;locus_tag=SH04_RS04215;old_locus_tag=SH04_04210 NZ_CP010443.1 Protein Homology CDS 866980 867897 . + 0 ID=cds805;Parent=gene840;Dbxref=Genbank:WP_000595482.1;Name=WP_000595482.1;Note=zinc-dependent%3B catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis;gbkey=CDS;gene=lpxC;product=UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase;protein_id=WP_000595482.1;transl_table=11 NZ_CP010443.1 RefSeq gene 868128 868640 . + . ID=gene841;Name=SH04_RS04220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04220;old_locus_tag=SH04_04215 NZ_CP010443.1 Protein Homology CDS 868128 868640 . + 0 ID=cds806;Parent=gene841;Dbxref=Genbank:WP_000014321.1;Name=WP_000014321.1;Note=secM translational pause allows for the initiation of secA translation;gbkey=CDS;product=secretion monitor;protein_id=WP_000014321.1;transl_table=11 NZ_CP010443.1 RefSeq gene 868702 871407 . + . ID=gene842;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;gene_synonym=azi,div;locus_tag=SH04_RS04225;old_locus_tag=SH04_04220 NZ_CP010443.1 Protein Homology CDS 868702 871407 . + 0 ID=cds807;Parent=gene842;Dbxref=Genbank:WP_000905789.1;Name=WP_000905789.1;Note=functions in protein export%3B can interact with acidic membrane phospholipids and the SecYEG protein complex%3B binds to preproteins%3B binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein%3B ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane%3B additional proteins SecD/F/YajC aid SecA recycling%3B exists in an equilibrium between monomers and dimers%3B may possibly form higher order oligomers%3B proteins in this cluster correspond SecA1%3B SecA2 is not essential and seems to play a role in secretion of a subset of proteins;gbkey=CDS;gene=secA;product=protein translocase subunit SecA;protein_id=WP_000905789.1;transl_table=11 NZ_CP010443.1 RefSeq gene 871467 871856 . + . ID=gene843;Name=SH04_RS04230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04230;old_locus_tag=SH04_04225 NZ_CP010443.1 Protein Homology CDS 871467 871856 . + 0 ID=cds808;Parent=gene843;Dbxref=Genbank:WP_000736007.1;Name=WP_000736007.1;gbkey=CDS;product=8-oxo-dGTP diphosphatase;protein_id=WP_000736007.1;transl_table=11 NZ_CP010443.1 RefSeq gene 871987 872121 . - . ID=gene844;Name=SH04_RS04235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04235;old_locus_tag=SH04_04230 NZ_CP010443.1 Protein Homology CDS 871987 872121 . - 0 ID=cds809;Parent=gene844;Dbxref=Genbank:WP_011378542.1;Name=WP_011378542.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011378542.1;transl_table=11 NZ_CP010443.1 RefSeq gene 872072 872269 . - . ID=gene845;Name=SH04_RS04240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04240;old_locus_tag=SH04_04235 NZ_CP010443.1 Protein Homology CDS 872072 872269 . - 0 ID=cds810;Parent=gene845;Dbxref=Genbank:WP_000005042.1;Name=WP_000005042.1;Note=inhibits supercoiling by DNA gyrase by binding to the GyrB subunit;gbkey=CDS;product=DNA gyrase inhibitor YacG;protein_id=WP_000005042.1;transl_table=11 NZ_CP010443.1 RefSeq gene 872279 873022 . - . ID=gene846;Name=SH04_RS04245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04245;old_locus_tag=SH04_04240 NZ_CP010443.1 Protein Homology CDS 872279 873022 . - 0 ID=cds811;Parent=gene846;Dbxref=Genbank:WP_001194734.1;Name=WP_001194734.1;gbkey=CDS;product=cell division protein ZapD;protein_id=WP_001194734.1;transl_table=11 NZ_CP010443.1 RefSeq gene 873022 873642 . - . ID=gene847;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=SH04_RS04250;old_locus_tag=SH04_04245 NZ_CP010443.1 Protein Homology CDS 873022 873642 . - 0 ID=cds812;Parent=gene847;Dbxref=Genbank:WP_001269520.1;Name=WP_001269520.1;Note=catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A%3B involved in coenzyme A biosynthesis;gbkey=CDS;gene=coaE;product=dephospho-CoA kinase;protein_id=WP_001269520.1;transl_table=11 NZ_CP010443.1 RefSeq gene 873867 874910 . + . ID=gene848;Name=SH04_RS04255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04255;old_locus_tag=SH04_04250 NZ_CP010443.1 Protein Homology CDS 873867 874910 . + 0 ID=cds813;Parent=gene848;Dbxref=Genbank:WP_001217338.1;Name=WP_001217338.1;Note=catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate;gbkey=CDS;product=GMP reductase;protein_id=WP_001217338.1;transl_table=11 NZ_CP010443.1 RefSeq gene 874945 876147 . - . ID=gene849;Name=SH04_RS04260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04260;old_locus_tag=SH04_04255 NZ_CP010443.1 Protein Homology CDS 874945 876147 . - 0 ID=cds814;Parent=gene849;Dbxref=Genbank:WP_000157266.1;Name=WP_000157266.1;gbkey=CDS;product=protein transport protein HofC;protein_id=WP_000157266.1;transl_table=11 NZ_CP010443.1 RefSeq gene 876137 877522 . - . ID=gene850;Name=SH04_RS04265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04265;old_locus_tag=SH04_04260 NZ_CP010443.1 Protein Homology CDS 876137 877522 . - 0 ID=cds815;Parent=gene850;Dbxref=Genbank:WP_001025145.1;Name=WP_001025145.1;gbkey=CDS;product=protein transport protein HofB;protein_id=WP_001025145.1;transl_table=11 NZ_CP010443.1 RefSeq gene 877532 877972 . - . ID=gene851;Name=SH04_RS04270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04270;old_locus_tag=SH04_04265 NZ_CP010443.1 Protein Homology CDS 877532 877972 . - 0 ID=cds816;Parent=gene851;Dbxref=Genbank:WP_000360904.1;Name=WP_000360904.1;gbkey=CDS;product=prepilin peptidase-dependent protein D;protein_id=WP_000360904.1;transl_table=11 NZ_CP010443.1 RefSeq gene 877994 878218 . + . ID=gene852;Name=SH04_RS04275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04275;old_locus_tag=SH04_04270 NZ_CP010443.1 Protein Homology CDS 877994 878218 . + 0 ID=cds817;Parent=gene852;Dbxref=Genbank:WP_032082663.1;Name=WP_032082663.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032082663.1;transl_table=11 NZ_CP010443.1 RefSeq gene 878175 879068 . - . ID=gene853;Name=SH04_RS04280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04280;old_locus_tag=SH04_04275 NZ_CP010443.1 Protein Homology CDS 878175 879068 . - 0 ID=cds818;Parent=gene853;Dbxref=Genbank:WP_001135174.1;Name=WP_001135174.1;Note=catalyzes the formation of pyridine-2%2C3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide;gbkey=CDS;product=nicotinate-nucleotide pyrophosphorylase [carboxylating];protein_id=WP_001135174.1;transl_table=11 NZ_CP010443.1 RefSeq gene 879156 879707 . + . ID=gene854;Name=SH04_RS04285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04285;old_locus_tag=SH04_04280 NZ_CP010443.1 Protein Homology CDS 879156 879707 . + 0 ID=cds819;Parent=gene854;Dbxref=Genbank:WP_000923721.1;Name=WP_000923721.1;gbkey=CDS;product=1%2C6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD;protein_id=WP_000923721.1;transl_table=11 NZ_CP010443.1 RefSeq gene 879704 880558 . + . ID=gene855;Name=SH04_RS04290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04290;old_locus_tag=SH04_04285 NZ_CP010443.1 Protein Homology CDS 879704 880558 . + 0 ID=cds820;Parent=gene855;Dbxref=Genbank:WP_000172005.1;Name=WP_000172005.1;Note=involved in regulation of beta-lactamase%3B putative signaling protein;gbkey=CDS;product=protein AmpE;protein_id=WP_000172005.1;transl_table=11 NZ_CP010443.1 RefSeq gene 880601 881971 . - . ID=gene856;Name=SH04_RS04295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04295;old_locus_tag=SH04_04290 NZ_CP010443.1 Protein Homology CDS 880601 881971 . - 0 ID=cds821;Parent=gene856;Dbxref=Genbank:WP_000399036.1;Name=WP_000399036.1;gbkey=CDS;product=aromatic amino acid transporter;protein_id=WP_000399036.1;transl_table=11 NZ_CP010443.1 RefSeq gene 882515 883279 . + . ID=gene857;Name=pdhR;gbkey=Gene;gene=pdhR;gene_biotype=protein_coding;locus_tag=SH04_RS04300;old_locus_tag=SH04_04295 NZ_CP010443.1 Protein Homology CDS 882515 883279 . + 0 ID=cds822;Parent=gene857;Dbxref=Genbank:WP_000331776.1;Name=WP_000331776.1;Note=activates lctPRD operon%3B autoregulates itself through repression of pdhR-aceEF-lpdA operon%3B regulates pyruvate dehydrogenase complex;gbkey=CDS;gene=pdhR;product=pyruvate dehydrogenase complex repressor;protein_id=WP_000331776.1;transl_table=11 NZ_CP010443.1 RefSeq gene 883440 886103 . + . ID=gene858;Name=aceE;gbkey=Gene;gene=aceE;gene_biotype=protein_coding;locus_tag=SH04_RS04305;old_locus_tag=SH04_04300 NZ_CP010443.1 Protein Homology CDS 883440 886103 . + 0 ID=cds823;Parent=gene858;Dbxref=Genbank:WP_000003820.1;Name=WP_000003820.1;Note=E1 component%3B part of pyruvate dehydrogenase%3B forms a complex with DlaT and LpdC;gbkey=CDS;gene=aceE;product=pyruvate dehydrogenase E1 component;protein_id=WP_000003820.1;transl_table=11 NZ_CP010443.1 RefSeq gene 886118 888010 . + . ID=gene859;Name=aceF;gbkey=Gene;gene=aceF;gene_biotype=protein_coding;locus_tag=SH04_RS04310;old_locus_tag=SH04_04305 NZ_CP010443.1 Protein Homology CDS 886118 888010 . + 0 ID=cds824;Parent=gene859;Dbxref=Genbank:WP_000963518.1;Name=WP_000963518.1;Note=E2 component of pyruvate dehydrogenase multienzyme complex%3B in Escherichia coli AceF contains three N-terminal lipoyl domains;gbkey=CDS;gene=aceF;product=dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex;protein_id=WP_000963518.1;transl_table=11 NZ_CP010443.1 RefSeq gene 888335 889759 . + . ID=gene860;Name=SH04_RS04315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04315;old_locus_tag=SH04_04310 NZ_CP010443.1 Protein Homology CDS 888335 889759 . + 0 ID=cds825;Parent=gene860;Dbxref=Genbank:WP_000102485.1;Name=WP_000102485.1;Note=E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex%3B catalyzes the oxidation of dihydrolipoamide to lipoamide;gbkey=CDS;product=dihydrolipoyl dehydrogenase;protein_id=WP_000102485.1;transl_table=11 NZ_CP010443.1 RefSeq gene 889830 891683 . - . ID=gene861;Name=SH04_RS04320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04320;old_locus_tag=SH04_04315 NZ_CP010443.1 Protein Homology CDS 889830 891683 . - 0 ID=cds826;Parent=gene861;Dbxref=Genbank:WP_000784470.1;Name=WP_000784470.1;gbkey=CDS;product=DUF3300 domain-containing protein;protein_id=WP_000784470.1;transl_table=11 NZ_CP010443.1 RefSeq gene 892038 894635 . + . ID=gene862;Name=SH04_RS04325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04325;old_locus_tag=SH04_04320 NZ_CP010443.1 Protein Homology CDS 892038 894635 . + 0 ID=cds827;Parent=gene862;Dbxref=Genbank:WP_001307570.1;Name=WP_001307570.1;Note=catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate;gbkey=CDS;product=aconitate hydratase 2;protein_id=WP_001307570.1;transl_table=11 NZ_CP010443.1 RefSeq gene 894811 895173 . + . ID=gene863;Name=SH04_RS04330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04330;old_locus_tag=SH04_04325 NZ_CP010443.1 Protein Homology CDS 894811 895173 . + 0 ID=cds828;Parent=gene863;Dbxref=Genbank:WP_000384306.1;Name=WP_000384306.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000384306.1;transl_table=11 NZ_CP010443.1 RefSeq gene 895211 896005 . - . ID=gene864;Name=SH04_RS04335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04335;old_locus_tag=SH04_04330 NZ_CP010443.1 Protein Homology CDS 895211 896005 . - 0 ID=cds829;Parent=gene864;Dbxref=Genbank:WP_000734287.1;Name=WP_000734287.1;Note=S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine;gbkey=CDS;product=S-adenosylmethionine decarboxylase proenzyme;protein_id=WP_000734287.1;transl_table=11 NZ_CP010443.1 RefSeq gene 896021 896887 . - . ID=gene865;Name=SH04_RS04340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04340;old_locus_tag=SH04_04335 NZ_CP010443.1 Protein Homology CDS 896021 896887 . - 0 ID=cds830;Parent=gene865;Dbxref=Genbank:WP_000818411.1;Name=WP_000818411.1;gbkey=CDS;product=polyamine aminopropyltransferase;protein_id=WP_000818411.1;transl_table=11 NZ_CP010443.1 RefSeq gene 896993 897340 . - . ID=gene866;Name=SH04_RS04345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04345;old_locus_tag=SH04_04340 NZ_CP010443.1 Protein Homology CDS 896993 897340 . - 0 ID=cds831;Parent=gene866;Dbxref=Genbank:WP_001295568.1;Name=WP_001295568.1;gbkey=CDS;product=PulS_OutS family protein;protein_id=WP_001295568.1;transl_table=11 NZ_CP010443.1 RefSeq gene 897506 899056 . + . ID=gene867;Name=SH04_RS04350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04350;old_locus_tag=SH04_04345 NZ_CP010443.1 Protein Homology CDS 897506 899056 . + 0 ID=cds832;Parent=gene867;Dbxref=Genbank:WP_001189647.1;Name=WP_001189647.1;Note=laccase%3B copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification;gbkey=CDS;product=blue copper oxidase CueO;protein_id=WP_001189647.1;transl_table=11 NZ_CP010443.1 RefSeq gene 899258 901648 . - . ID=gene868;Name=SH04_RS04355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04355;old_locus_tag=SH04_04350 NZ_CP010443.1 Protein Homology CDS 899258 901648 . - 0 ID=cds833;Parent=gene868;Dbxref=Genbank:WP_001306211.1;Name=WP_001306211.1;Note=quinoprotein glucose dehydrogenase%3B catalyzes the formation of D-glucono-1%2C5-lactone from D-glucose and ubiquinone;gbkey=CDS;product=quinoprotein glucose dehydrogenase;protein_id=WP_001306211.1;transl_table=11 NZ_CP010443.1 RefSeq gene 901854 902390 . + . ID=gene869;Name=SH04_RS04360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04360;old_locus_tag=SH04_04355 NZ_CP010443.1 Protein Homology CDS 901854 902390 . + 0 ID=cds834;Parent=gene869;Dbxref=Genbank:WP_000683335.1;Name=WP_000683335.1;Note=catalyzes the formation of inosine monophosphate from hypoxanthine and 5-phospho-alpha-D-ribose 1-diphosphate;gbkey=CDS;product=hypoxanthine phosphoribosyltransferase;protein_id=WP_000683335.1;transl_table=11 NZ_CP010443.1 RefSeq gene 902431 903093 . - . ID=gene870;Name=SH04_RS04365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04365;old_locus_tag=SH04_04360 NZ_CP010443.1 Protein Homology CDS 902431 903093 . - 0 ID=cds835;Parent=gene870;Dbxref=Genbank:WP_000651599.1;Name=WP_000651599.1;Note=catalyzes the interconversion of bicarbonate and carbon dioxide;gbkey=CDS;product=carbonic anhydrase;protein_id=WP_000651599.1;transl_table=11 NZ_CP010443.1 RefSeq gene 903202 904128 . + . ID=gene871;Name=SH04_RS04370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04370;old_locus_tag=SH04_04365 NZ_CP010443.1 Protein Homology CDS 903202 904128 . + 0 ID=cds836;Parent=gene871;Dbxref=Genbank:WP_000150637.1;Name=WP_000150637.1;gbkey=CDS;product=ABC transporter ATPase;protein_id=WP_000150637.1;transl_table=11 NZ_CP010443.1 RefSeq gene 904125 904895 . + . ID=gene872;Name=SH04_RS04375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04375;old_locus_tag=SH04_04370 NZ_CP010443.1 Protein Homology CDS 904125 904895 . + 0 ID=cds837;Parent=gene872;Dbxref=Genbank:WP_000972203.1;Name=WP_000972203.1;gbkey=CDS;product=inner membrane transport permease YadH;protein_id=WP_000972203.1;transl_table=11 NZ_CP010443.1 RefSeq gene 905000 905440 . + . ID=gene873;Name=SH04_RS04380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04380;old_locus_tag=SH04_04375 NZ_CP010443.1 Protein Homology CDS 905000 905440 . + 0 ID=cds838;Parent=gene873;Dbxref=Genbank:WP_000901987.1;Name=WP_000901987.1;gbkey=CDS;product=PTS Enzyme IIA;protein_id=WP_000901987.1;transl_table=11 NZ_CP010443.1 RefSeq gene 905504 906733 . + . ID=gene874;Name=SH04_RS04385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04385;old_locus_tag=SH04_04380 NZ_CP010443.1 Protein Homology CDS 905504 906733 . + 0 ID=cds839;Parent=gene874;Dbxref=Genbank:WP_000277917.1;Name=WP_000277917.1;gbkey=CDS;product=polysaccharide deacetylase lipoprotein;protein_id=WP_000277917.1;transl_table=11 NZ_CP010443.1 RefSeq gene 906737 907117 . - . ID=gene875;Name=SH04_RS04390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04390;old_locus_tag=SH04_04385 NZ_CP010443.1 Protein Homology CDS 906737 907117 . - 0 ID=cds840;Parent=gene875;Dbxref=Genbank:WP_000621515.1;Name=WP_000621515.1;gbkey=CDS;product=aspartate 1-decarboxylase;protein_id=WP_000621515.1;transl_table=11 NZ_CP010443.1 RefSeq gene 907391 908293 . + . ID=gene876;Name=SH04_RS04395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04395;old_locus_tag=SH04_04390 NZ_CP010443.1 Protein Homology CDS 907391 908293 . + 0 ID=cds841;Parent=gene876;Dbxref=Genbank:WP_000339954.1;Name=WP_000339954.1;gbkey=CDS;product=transposase;protein_id=WP_000339954.1;transl_table=11 NZ_CP010443.1 RefSeq gene 908367 909218 . - . ID=gene877;Name=panC;gbkey=Gene;gene=panC;gene_biotype=protein_coding;locus_tag=SH04_RS04400;old_locus_tag=SH04_04395 NZ_CP010443.1 Protein Homology CDS 908367 909218 . - 0 ID=cds842;Parent=gene877;Dbxref=Genbank:WP_000905383.1;Name=WP_000905383.1;Note=catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine;gbkey=CDS;gene=panC;product=pantothenate synthetase;protein_id=WP_000905383.1;transl_table=11 NZ_CP010443.1 RefSeq gene 909230 910024 . - . ID=gene878;Name=panB;gbkey=Gene;gene=panB;gene_biotype=protein_coding;locus_tag=SH04_RS04405;old_locus_tag=SH04_04400 NZ_CP010443.1 Protein Homology CDS 909230 910024 . - 0 ID=cds843;Parent=gene878;Dbxref=Genbank:WP_000805497.1;Name=WP_000805497.1;Note=catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5%2C10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate;gbkey=CDS;gene=panB;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=WP_000805497.1;transl_table=11 NZ_CP010443.1 RefSeq gene 910138 911376 . - . ID=gene879;Name=SH04_RS04410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04410;old_locus_tag=SH04_04405 NZ_CP010443.1 Protein Homology CDS 910138 911376 . - 0 ID=cds844;Parent=gene879;Dbxref=Genbank:WP_000848455.1;Name=WP_000848455.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_000848455.1;transl_table=11 NZ_CP010443.1 RefSeq gene 911426 912022 . - . ID=gene880;Name=SH04_RS04415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04415;old_locus_tag=SH04_04410 NZ_CP010443.1 Protein Homology CDS 911426 912022 . - 0 ID=cds845;Parent=gene880;Dbxref=Genbank:WP_000553749.1;Name=WP_000553749.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_000553749.1;transl_table=11 NZ_CP010443.1 RefSeq gene 912049 912651 . - . ID=gene881;Name=SH04_RS04420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04420;old_locus_tag=SH04_04415 NZ_CP010443.1 Protein Homology CDS 912049 912651 . - 0 ID=cds846;Parent=gene881;Dbxref=Genbank:WP_000143198.1;Name=WP_000143198.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_000143198.1;transl_table=11 NZ_CP010443.1 RefSeq gene 912666 913235 . - . ID=gene882;Name=SH04_RS04425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04425;old_locus_tag=SH04_04420 NZ_CP010443.1 Protein Homology CDS 912666 913235 . - 0 ID=cds847;Parent=gene882;Dbxref=Genbank:WP_000598300.1;Name=WP_000598300.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_000598300.1;transl_table=11 NZ_CP010443.1 RefSeq gene 913252 915849 . - . ID=gene883;Name=SH04_RS04430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04430;old_locus_tag=SH04_04425 NZ_CP010443.1 Protein Homology CDS 913252 915849 . - 0 ID=cds848;Parent=gene883;Dbxref=Genbank:WP_000151605.1;Name=WP_000151605.1;Note=similar to the fimbrial usher protein PapC;gbkey=CDS;product=outer membrane usher protein HtrE;protein_id=WP_000151605.1;transl_table=11 NZ_CP010443.1 RefSeq gene 915884 916624 . - . ID=gene884;Name=ecpD;gbkey=Gene;gene=ecpD;gene_biotype=protein_coding;gene_synonym=staB,stkB;locus_tag=SH04_RS04435;old_locus_tag=SH04_04430 NZ_CP010443.1 Protein Homology CDS 915884 916624 . - 0 ID=cds849;Parent=gene884;Dbxref=Genbank:WP_000465928.1;Name=WP_000465928.1;gbkey=CDS;gene=ecpD;product=fimbrial chaperone;protein_id=WP_000465928.1;transl_table=11 NZ_CP010443.1 RefSeq gene 916722 917306 . - . ID=gene885;Name=SH04_RS04440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04440;old_locus_tag=SH04_04435 NZ_CP010443.1 Protein Homology CDS 916722 917306 . - 0 ID=cds850;Parent=gene885;Dbxref=Genbank:WP_000038438.1;Name=WP_000038438.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_000038438.1;transl_table=11 NZ_CP010443.1 RefSeq gene 917676 918155 . - . ID=gene886;Name=SH04_RS04445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04445;old_locus_tag=SH04_04440 NZ_CP010443.1 Protein Homology CDS 917676 918155 . - 0 ID=cds851;Parent=gene886;Dbxref=Genbank:WP_000215139.1;Name=WP_000215139.1;Note=catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7%2C8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7%2C8-dihydropteridine and ATP;gbkey=CDS;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase;protein_id=WP_000215139.1;transl_table=11 NZ_CP010443.1 RefSeq gene 918152 919516 . - . ID=gene887;Name=pcnB;gbkey=Gene;gene=pcnB;gene_biotype=protein_coding;locus_tag=SH04_RS04450;old_locus_tag=SH04_04445 NZ_CP010443.1 Protein Homology CDS 918152 919516 . - 0 ID=cds852;Parent=gene887;Dbxref=Genbank:WP_001297048.1;Name=WP_001297048.1;Note=Polymerase that creates the 3' poly(A) tail found in some mRNA's;gbkey=CDS;gene=pcnB;product=poly(A) polymerase I;protein_id=WP_001297048.1;transl_table=11 NZ_CP010443.1 RefSeq gene 919609 920505 . - . ID=gene888;Name=SH04_RS04455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04455;old_locus_tag=SH04_04450 NZ_CP010443.1 Protein Homology CDS 919609 920505 . - 0 ID=cds853;Parent=gene888;Dbxref=Genbank:WP_000132715.1;Name=WP_000132715.1;Note=this tRNA synthetase lacks the tRNA anticodon interaction domain%3B instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4%2C5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp%3B the modified tRNA does not bind elongation factor Tu;gbkey=CDS;product=glutamyl-Q tRNA(Asp) ligase;protein_id=WP_000132715.1;transl_table=11 NZ_CP010443.1 RefSeq gene 920572 921027 . - . ID=gene889;Name=dksA;gbkey=Gene;gene=dksA;gene_biotype=protein_coding;locus_tag=SH04_RS04460;old_locus_tag=SH04_04455 NZ_CP010443.1 Protein Homology CDS 920572 921027 . - 0 ID=cds854;Parent=gene889;Dbxref=Genbank:WP_001155227.1;Name=WP_001155227.1;gbkey=CDS;gene=dksA;product=RNA polymerase-binding transcription factor DksA;protein_id=WP_001155227.1;transl_table=11 NZ_CP010443.1 RefSeq gene 921205 921909 . - . ID=gene890;Name=SH04_RS04465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04465;old_locus_tag=SH04_04460 NZ_CP010443.1 Protein Homology CDS 921205 921909 . - 0 ID=cds855;Parent=gene890;Dbxref=Genbank:WP_000396036.1;Name=WP_000396036.1;gbkey=CDS;product=sugar fermentation stimulation protein A;protein_id=WP_000396036.1;transl_table=11 NZ_CP010443.1 RefSeq gene 921924 922454 . - . ID=gene891;Name=SH04_RS04470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04470;old_locus_tag=SH04_04465 NZ_CP010443.1 Protein Homology CDS 921924 922454 . - 0 ID=cds856;Parent=gene891;Dbxref=Genbank:WP_001294700.1;Name=WP_001294700.1;Note=catalyzes the ligation and cleavage of of 2'-5' linkages in RNA;gbkey=CDS;product=RNA 2'%2C3'-cyclic phosphodiesterase;protein_id=WP_001294700.1;transl_table=11 NZ_CP010443.1 RefSeq gene 922483 924957 . + . ID=gene892;Name=SH04_RS04475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04475;old_locus_tag=SH04_04470 NZ_CP010443.1 Protein Homology CDS 922483 924957 . + 0 ID=cds857;Parent=gene892;Dbxref=Genbank:WP_000938610.1;Name=WP_000938610.1;Note=similar in sequence to the ATP-dependent RNA helicase HrpA;gbkey=CDS;product=RNA helicase;protein_id=WP_000938610.1;transl_table=11 NZ_CP010443.1 RefSeq gene 924960 925166 . + . ID=gene893;Name=SH04_RS04480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04480;old_locus_tag=SH04_04475 NZ_CP010443.1 Protein Homology CDS 924960 925166 . + 0 ID=cds858;Parent=gene893;Dbxref=Genbank:WP_001347263.1;Name=WP_001347263.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001347263.1;transl_table=11 NZ_CP010443.1 RefSeq gene 925153 927687 . + . ID=gene894;Name=mrcB;gbkey=Gene;gene=mrcB;gene_biotype=protein_coding;gene_synonym=ponB;locus_tag=SH04_RS04485;old_locus_tag=SH04_04480 NZ_CP010443.1 Protein Homology CDS 925153 927687 . + 0 ID=cds859;Parent=gene894;Dbxref=Genbank:WP_000918162.1;Name=WP_000918162.1;Note=penicillin-binding protein 1b%3B contains transglycosylase and transpeptidase activity%3B major enzyme for peptidoglycan biosynthesis in Escherichia coli%3B transmembrane protein%3B forms dimers%3B three variants%2C one of which may be a degradation product%2C while the other appears to result from an alternative initiation site%2C are found within the cell;gbkey=CDS;gene=mrcB;product=penicillin-binding protein 1B;protein_id=WP_000918162.1;transl_table=11 NZ_CP010443.1 RefSeq gene 927907 930150 . + . ID=gene895;Name=SH04_RS04490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04490;old_locus_tag=SH04_04485 NZ_CP010443.1 Protein Homology CDS 927907 930150 . + 0 ID=cds860;Parent=gene895;Dbxref=Genbank:WP_000124438.1;Name=WP_000124438.1;Note=involved with the transport of ferrichrome across the outer membrane%3B binds the ferrichrome-iron ligand and interacts with the TonB protein;gbkey=CDS;product=ferrichrome-iron receptor;protein_id=WP_000124438.1;transl_table=11 NZ_CP010443.1 RefSeq gene 930201 930998 . + . ID=gene896;Name=SH04_RS04495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04495;old_locus_tag=SH04_04490 NZ_CP010443.1 Protein Homology CDS 930201 930998 . + 0 ID=cds861;Parent=gene896;Dbxref=Genbank:WP_001158931.1;Name=WP_001158931.1;Note=part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter;gbkey=CDS;product=iron(3+)-hydroxamate import ATP-binding protein FhuC;protein_id=WP_001158931.1;transl_table=11 NZ_CP010443.1 RefSeq gene 930998 931888 . + . ID=gene897;Name=SH04_RS04500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04500;old_locus_tag=SH04_04495 NZ_CP010443.1 Protein Homology CDS 930998 931888 . + 0 ID=cds862;Parent=gene897;Dbxref=Genbank:WP_001310529.1;Name=WP_001310529.1;Note=Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter%3B binds to all hydroxamate siderophores;gbkey=CDS;product=iron(3+)-hydroxamate-binding protein FhuD;protein_id=WP_001310529.1;transl_table=11 NZ_CP010443.1 RefSeq gene 931885 933867 . + . ID=gene898;Name=SH04_RS04505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04505;old_locus_tag=SH04_04500 NZ_CP010443.1 Protein Homology CDS 931885 933867 . + 0 ID=cds863;Parent=gene898;Dbxref=Genbank:WP_000044072.1;Name=WP_000044072.1;gbkey=CDS;product=iron(3+)-hydroxamate import system permease FhuB;protein_id=WP_000044072.1;transl_table=11 NZ_CP010443.1 RefSeq gene 934025 935305 . - . ID=gene899;Name=SH04_RS04510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04510;old_locus_tag=SH04_04505 NZ_CP010443.1 Protein Homology CDS 934025 935305 . - 0 ID=cds864;Parent=gene899;Dbxref=Genbank:WP_000045315.1;Name=WP_000045315.1;Note=Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway;gbkey=CDS;product=glutamate-1-semialdehyde 2%2C1-aminomutase;protein_id=WP_000045315.1;transl_table=11 NZ_CP010443.1 RefSeq gene 935530 936951 . + . ID=gene900;Name=SH04_RS04515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04515;old_locus_tag=SH04_04510 NZ_CP010443.1 Protein Homology CDS 935530 936951 . + 0 ID=cds865;Parent=gene900;Dbxref=Genbank:WP_000845394.1;Name=WP_000845394.1;Note=Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation;gbkey=CDS;product=H+/Cl- exchange transporter ClcA;protein_id=WP_000845394.1;transl_table=11 NZ_CP010443.1 RefSeq gene 937033 937377 . + . ID=gene901;Name=SH04_RS04520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04520;old_locus_tag=SH04_04515 NZ_CP010443.1 Protein Homology CDS 937033 937377 . + 0 ID=cds866;Parent=gene901;Dbxref=Genbank:WP_001295564.1;Name=WP_001295564.1;Note=essential respiratory protein A%3B may be involved in the transfer of iron-sulfur clusters%3B essential for growth using oxygen or alternate electron acceptors;gbkey=CDS;product=iron-sulfur cluster insertion protein ErpA;protein_id=WP_001295564.1;transl_table=11 NZ_CP010443.1 RefSeq gene 937424 938047 . - . ID=gene902;Name=SH04_RS04525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04525;old_locus_tag=SH04_04520 NZ_CP010443.1 Protein Homology CDS 937424 938047 . - 0 ID=cds867;Parent=gene902;Dbxref=Genbank:WP_000964221.1;Name=WP_000964221.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000964221.1;transl_table=11 NZ_CP010443.1 RefSeq gene 938085 938885 . - . ID=gene903;Name=SH04_RS04530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04530;old_locus_tag=SH04_04525 NZ_CP010443.1 Protein Homology CDS 938085 938885 . - 0 ID=cds868;Parent=gene903;Dbxref=Genbank:WP_001129927.1;Name=WP_001129927.1;Note=solute binding component of the vitamin B12 transport system BtuCDF;gbkey=CDS;product=vitamin B12-binding protein;protein_id=WP_001129927.1;transl_table=11 NZ_CP010443.1 RefSeq gene 938878 939576 . - . ID=gene904;Name=SH04_RS04535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04535;old_locus_tag=SH04_04530 NZ_CP010443.1 Protein Homology CDS 938878 939576 . - 0 ID=cds869;Parent=gene904;Dbxref=Genbank:WP_000689844.1;Name=WP_000689844.1;Note=enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine;gbkey=CDS;product=5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase;protein_id=WP_000689844.1;transl_table=11 NZ_CP010443.1 RefSeq gene 939660 941177 . + . ID=gene905;Name=dgt;gbkey=Gene;gene=dgt;gene_biotype=protein_coding;locus_tag=SH04_RS04540;old_locus_tag=SH04_04535 NZ_CP010443.1 Protein Homology CDS 939660 941177 . + 0 ID=cds870;Parent=gene905;Dbxref=Genbank:WP_000057073.1;Name=WP_000057073.1;Note=forms a homotetramer%3B requires magnesium for activity%3B catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate;gbkey=CDS;gene=dgt;product=deoxyguanosinetriphosphate triphosphohydrolase;protein_id=WP_000057073.1;transl_table=11 NZ_CP010443.1 RefSeq gene 941307 942731 . + . ID=gene906;Name=SH04_RS04545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04545;old_locus_tag=SH04_04540 NZ_CP010443.1 Protein Homology CDS 941307 942731 . + 0 ID=cds871;Parent=gene906;Dbxref=Genbank:WP_000753946.1;Name=WP_000753946.1;Note=protease Do%3B required at high temperature%3B degrades damaged proteins;gbkey=CDS;product=periplasmic serine endoprotease DegP;protein_id=WP_000753946.1;transl_table=11 NZ_CP010443.1 RefSeq gene 942886 944043 . + . ID=gene907;Name=SH04_RS04550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04550;old_locus_tag=SH04_04545 NZ_CP010443.1 Protein Homology CDS 942886 944043 . + 0 ID=cds872;Parent=gene907;Dbxref=Genbank:WP_000929443.1;Name=WP_000929443.1;Note=regulates the expression of the operons for the enzymes involved in galactarate%2C glucarate and glycerate utilization;gbkey=CDS;product=carbohydrate diacid regulator;protein_id=WP_000929443.1;transl_table=11 NZ_CP010443.1 RefSeq gene 944132 944518 . - . ID=gene908;Name=SH04_RS04555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04555;old_locus_tag=SH04_04550 NZ_CP010443.1 Protein Homology CDS 944132 944518 . - 0 ID=cds873;Parent=gene908;Dbxref=Genbank:WP_000272188.1;Name=WP_000272188.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000272188.1;transl_table=11 NZ_CP010443.1 RefSeq gene 944680 945492 . - . ID=gene909;Name=SH04_RS04560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04560;old_locus_tag=SH04_04555 NZ_CP010443.1 Protein Homology CDS 944680 945492 . - 0 ID=cds874;Parent=gene909;Dbxref=Genbank:WP_000625631.1;Name=WP_000625631.1;gbkey=CDS;product=phosphodiesterase YaeI;protein_id=WP_000625631.1;transl_table=11 NZ_CP010443.1 RefSeq gene 945546 946370 . - . ID=gene910;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=SH04_RS04565;old_locus_tag=SH04_04560 NZ_CP010443.1 Protein Homology CDS 945546 946370 . - 0 ID=cds875;Parent=gene910;Dbxref=Genbank:WP_001186650.1;Name=WP_001186650.1;Note=catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway;gbkey=CDS;gene=dapD;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase;protein_id=WP_001186650.1;transl_table=11 NZ_CP010443.1 RefSeq gene 946401 949073 . - . ID=gene911;Name=SH04_RS04570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04570;old_locus_tag=SH04_04565 NZ_CP010443.1 Protein Homology CDS 946401 949073 . - 0 ID=cds876;Parent=gene911;Dbxref=Genbank:WP_001094586.1;Name=WP_001094586.1;Note=catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein;gbkey=CDS;product=uridylyltransferase;protein_id=WP_001094586.1;transl_table=11 NZ_CP010443.1 RefSeq gene 949135 949929 . - . ID=gene912;Name=SH04_RS04575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04575;old_locus_tag=SH04_04570 NZ_CP010443.1 Protein Homology CDS 949135 949929 . - 0 ID=cds877;Parent=gene912;Dbxref=Genbank:WP_001018194.1;Name=WP_001018194.1;Note=catalyzes the removal of N-terminal amino acids from peptides and arylamides%3B generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn%2C Fe%2C or Mn;gbkey=CDS;product=methionine aminopeptidase;protein_id=WP_001018194.1;transl_table=11 NZ_CP010443.1 RefSeq gene 950297 951022 . + . ID=gene913;Name=SH04_RS04580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04580;old_locus_tag=SH04_04575 NZ_CP010443.1 Protein Homology CDS 950297 951022 . + 0 ID=cds878;Parent=gene913;Dbxref=Genbank:WP_000246882.1;Name=WP_000246882.1;gbkey=CDS;product=30S ribosomal protein S2;protein_id=WP_000246882.1;transl_table=11 NZ_CP010443.1 RefSeq gene 951280 952131 . + . ID=gene914;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=SH04_RS04585;old_locus_tag=SH04_04580 NZ_CP010443.1 Protein Homology CDS 951280 952131 . + 0 ID=cds879;Parent=gene914;Dbxref=Genbank:WP_000818114.1;Name=WP_000818114.1;Note=EF-Ts%3B functions during elongation stage of protein translation%3B forms a dimer%3B associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu;gbkey=CDS;gene=tsf;product=elongation factor Ts;protein_id=WP_000818114.1;transl_table=11 NZ_CP010443.1 RefSeq gene 952278 953003 . + . ID=gene915;Name=SH04_RS04590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04590;old_locus_tag=SH04_04585 NZ_CP010443.1 Protein Homology CDS 952278 953003 . + 0 ID=cds880;Parent=gene915;Dbxref=Genbank:WP_000224573.1;Name=WP_000224573.1;gbkey=CDS;product=uridylate kinase;protein_id=WP_000224573.1;transl_table=11 NZ_CP010443.1 RefSeq gene 953295 953852 . + . ID=gene916;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;locus_tag=SH04_RS04595;old_locus_tag=SH04_04590 NZ_CP010443.1 Protein Homology CDS 953295 953852 . + 0 ID=cds881;Parent=gene916;Dbxref=Genbank:WP_000622418.1;Name=WP_000622418.1;Note=Rrf%3B Frr%3B ribosome-recycling factor%3B release factor 4%3B RF4%3B recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G%3B A GTPase-dependent process results in release of 50S from 70S%3B inhibited by release factor RF-1%3B essential for viability%3B structurally similar to tRNAs;gbkey=CDS;gene=frr;product=ribosome-recycling factor;protein_id=WP_000622418.1;transl_table=11 NZ_CP010443.1 RefSeq gene 953944 955140 . + . ID=gene917;Name=SH04_RS04600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04600;old_locus_tag=SH04_04595 NZ_CP010443.1 Protein Homology CDS 953944 955140 . + 0 ID=cds882;Parent=gene917;Dbxref=Genbank:WP_000811923.1;Name=WP_000811923.1;Note=catalyzes the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate;gbkey=CDS;product=1-deoxy-D-xylulose 5-phosphate reductoisomerase;protein_id=WP_000811923.1;transl_table=11 NZ_CP010443.1 RefSeq gene 955329 956087 . + . ID=gene918;Name=SH04_RS04605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04605;old_locus_tag=SH04_04600 NZ_CP010443.1 Protein Homology CDS 955329 956087 . + 0 ID=cds883;Parent=gene918;Dbxref=Genbank:WP_001295562.1;Name=WP_001295562.1;Note=catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate;gbkey=CDS;product=UDP pyrophosphate synthase;protein_id=WP_001295562.1;transl_table=11 NZ_CP010443.1 RefSeq gene 956100 956957 . + . ID=gene919;Name=cdsA;gbkey=Gene;gene=cdsA;gene_biotype=protein_coding;locus_tag=SH04_RS04610;old_locus_tag=SH04_04605 NZ_CP010443.1 Protein Homology CDS 956100 956957 . + 0 ID=cds884;Parent=gene919;Dbxref=Genbank:WP_000922446.1;Name=WP_000922446.1;Note=catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate;gbkey=CDS;gene=cdsA;product=phosphatidate cytidylyltransferase;protein_id=WP_000922446.1;transl_table=11 NZ_CP010443.1 RefSeq gene 956969 958321 . + . ID=gene920;Name=SH04_RS04615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04615;old_locus_tag=SH04_04610 NZ_CP010443.1 Protein Homology CDS 956969 958321 . + 0 ID=cds885;Parent=gene920;Dbxref=Genbank:WP_001295561.1;Name=WP_001295561.1;Note=catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response;gbkey=CDS;product=inner membrane zinc RIP metalloprotease%3B RpoE activator%2C by degrading RseA%3B cleaved signal peptide endoprotease;protein_id=WP_001295561.1;transl_table=11 NZ_CP010443.1 RefSeq gene 958351 960783 . + . ID=gene921;Name=SH04_RS04620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04620;old_locus_tag=SH04_04615 NZ_CP010443.1 Protein Homology CDS 958351 960783 . + 0 ID=cds886;Parent=gene921;Dbxref=Genbank:WP_001240896.1;Name=WP_001240896.1;Note=part of a complex with YfgL%2C YfiO%2C and NlpB involved in outer membrane protein biosynthesis%3B involved in the assembly of outer membrane proteins;gbkey=CDS;product=outer membrane protein assembly factor BamA;protein_id=WP_001240896.1;transl_table=11 NZ_CP010443.1 RefSeq gene 960905 961390 . + . ID=gene922;Name=SH04_RS04625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04625;old_locus_tag=SH04_04620 NZ_CP010443.1 Protein Homology CDS 960905 961390 . + 0 ID=cds887;Parent=gene922;Dbxref=Genbank:WP_000758956.1;Name=WP_000758956.1;gbkey=CDS;product=chaperone protein Skp;protein_id=WP_000758956.1;transl_table=11 NZ_CP010443.1 RefSeq gene 961394 962419 . + . ID=gene923;Name=lpxD;gbkey=Gene;gene=lpxD;gene_biotype=protein_coding;locus_tag=SH04_RS04630;old_locus_tag=SH04_04625 NZ_CP010443.1 Protein Homology CDS 961394 962419 . + 0 ID=cds888;Parent=gene923;Dbxref=Genbank:WP_001139279.1;Name=WP_001139279.1;Note=adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis;gbkey=CDS;gene=lpxD;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=WP_001139279.1;transl_table=11 NZ_CP010443.1 RefSeq gene 962524 962979 . + . ID=gene924;Name=SH04_RS04635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04635;old_locus_tag=SH04_04630 NZ_CP010443.1 Protein Homology CDS 962524 962979 . + 0 ID=cds889;Parent=gene924;Dbxref=Genbank:WP_000210739.1;Name=WP_000210739.1;gbkey=CDS;product=3-hydroxyacyl-ACP dehydratase;protein_id=WP_000210739.1;transl_table=11 NZ_CP010443.1 RefSeq gene 962983 963771 . + . ID=gene925;Name=SH04_RS04640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04640;old_locus_tag=SH04_04635 NZ_CP010443.1 Protein Homology CDS 962983 963771 . + 0 ID=cds890;Parent=gene925;Dbxref=Genbank:WP_000565966.1;Name=WP_000565966.1;Note=catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis;gbkey=CDS;product=acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase;protein_id=WP_000565966.1;transl_table=11 NZ_CP010443.1 RefSeq gene 963771 964919 . + . ID=gene926;Name=lpxB;gbkey=Gene;gene=lpxB;gene_biotype=protein_coding;locus_tag=SH04_RS04645;old_locus_tag=SH04_04640 NZ_CP010443.1 Protein Homology CDS 963771 964919 . + 0 ID=cds891;Parent=gene926;Dbxref=Genbank:WP_000139654.1;Name=WP_000139654.1;Note=catalyzes the formation of lipid A disaccharide from UDP-2%2C3-diacylglucosamine and 2%2C3-diacylglucosamine-1-phosphate%2C lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM;gbkey=CDS;gene=lpxB;product=lipid-A-disaccharide synthase;protein_id=WP_000139654.1;transl_table=11 NZ_CP010443.1 RefSeq gene 964916 965512 . + . ID=gene927;Name=rnhB;gbkey=Gene;gene=rnhB;gene_biotype=protein_coding;locus_tag=SH04_RS04650;old_locus_tag=SH04_04645 NZ_CP010443.1 Protein Homology CDS 964916 965512 . + 0 ID=cds892;Parent=gene927;Dbxref=Genbank:WP_000569430.1;Name=WP_000569430.1;Note=RNH2%3B RNase HII%3B binds manganese%3B endonuclease which specifically degrades the RNA of RNA-DNA hybrids;gbkey=CDS;gene=rnhB;product=ribonuclease HII;protein_id=WP_000569430.1;transl_table=11 NZ_CP010443.1 RefSeq gene 965549 969031 . + . ID=gene928;Name=dnaE;gbkey=Gene;gene=dnaE;gene_biotype=protein_coding;locus_tag=SH04_RS04655;old_locus_tag=SH04_04650 NZ_CP010443.1 Protein Homology CDS 965549 969031 . + 0 ID=cds893;Parent=gene928;Dbxref=Genbank:WP_001294757.1;Name=WP_001294757.1;Note=catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time%3B main replicative polymerase;gbkey=CDS;gene=dnaE;product=DNA polymerase III subunit alpha;protein_id=WP_001294757.1;transl_table=11 NZ_CP010443.1 RefSeq gene 969044 970003 . + . ID=gene929;Name=SH04_RS04660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04660;old_locus_tag=SH04_04655 NZ_CP010443.1 Protein Homology CDS 969044 970003 . + 0 ID=cds894;Parent=gene929;Dbxref=Genbank:WP_000055741.1;Name=WP_000055741.1;Note=catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits%3B one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein;gbkey=CDS;product=acetyl-CoA carboxylase carboxyltransferase subunit alpha;protein_id=WP_000055741.1;transl_table=11 NZ_CP010443.1 RefSeq gene 970102 972243 . + . ID=gene930;Name=SH04_RS04665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04665;old_locus_tag=SH04_04660 NZ_CP010443.1 Protein Homology CDS 970102 972243 . + 0 ID=cds895;Parent=gene930;Dbxref=Genbank:WP_001020973.1;Name=WP_001020973.1;Note=constitutive%3B catalyzes the formation of cadaverine from lysine;gbkey=CDS;product=lysine decarboxylase constitutive;protein_id=WP_001020973.1;transl_table=11 NZ_CP010443.1 RefSeq gene 972300 972689 . + . ID=gene931;Name=SH04_RS04670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04670;old_locus_tag=SH04_04665 NZ_CP010443.1 Protein Homology CDS 972300 972689 . + 0 ID=cds896;Parent=gene931;Dbxref=Genbank:WP_000901099.1;Name=WP_000901099.1;gbkey=CDS;product=lyase;protein_id=WP_000901099.1;transl_table=11 NZ_CP010443.1 RefSeq gene 972754 974052 . + . ID=gene932;Name=tilS;gbkey=Gene;gene=tilS;gene_biotype=protein_coding;locus_tag=SH04_RS04675;old_locus_tag=SH04_04670 NZ_CP010443.1 Protein Homology CDS 972754 974052 . + 0 ID=cds897;Parent=gene932;Dbxref=Genbank:WP_000176549.1;Name=WP_000176549.1;Note=Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU%3B ATP-dependent%3B responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase;gbkey=CDS;gene=tilS;product=tRNA(Ile)-lysidine synthase;protein_id=WP_000176549.1;transl_table=11 NZ_CP010443.1 RefSeq gene 974101 974361 . - . ID=gene933;Name=SH04_RS04680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04680;old_locus_tag=SH04_04675 NZ_CP010443.1 Protein Homology CDS 974101 974361 . - 0 ID=cds898;Parent=gene933;Dbxref=Genbank:WP_000062312.1;Name=WP_000062312.1;Note=Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination;gbkey=CDS;product=Rho-binding antiterminator;protein_id=WP_000062312.1;transl_table=11 NZ_CP010443.1 RefSeq gene 974348 974548 . - . ID=gene934;Name=SH04_RS04685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04685;old_locus_tag=SH04_04680 NZ_CP010443.1 Protein Homology CDS 974348 974548 . - 0 ID=cds899;Parent=gene934;Dbxref=Genbank:WP_000417058.1;Name=WP_000417058.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000417058.1;transl_table=11 NZ_CP010443.1 RefSeq gene 974714 975259 . + . ID=gene935;Name=SH04_RS04690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04690;old_locus_tag=SH04_04685 NZ_CP010443.1 Protein Homology CDS 974714 975259 . + 0 ID=cds900;Parent=gene935;Dbxref=Genbank:WP_001185290.1;Name=WP_001185290.1;gbkey=CDS;product=PDDEXK superfamily protein;protein_id=WP_001185290.1;transl_table=11 NZ_CP010443.1 RefSeq gene 975256 975678 . + . ID=gene936;Name=SH04_RS04695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04695;old_locus_tag=SH04_04690 NZ_CP010443.1 Protein Homology CDS 975256 975678 . + 0 ID=cds901;Parent=gene936;Dbxref=Genbank:WP_000635537.1;Name=WP_000635537.1;gbkey=CDS;product=peptidyl-tRNA hydrolase ArfB;protein_id=WP_000635537.1;transl_table=11 NZ_CP010443.1 RefSeq gene 975692 976402 . + . ID=gene937;Name=SH04_RS04700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04700;old_locus_tag=SH04_04695 NZ_CP010443.1 Protein Homology CDS 975692 976402 . + 0 ID=cds902;Parent=gene937;Dbxref=Genbank:WP_000239163.1;Name=WP_000239163.1;gbkey=CDS;product=lipoprotein NlpE;protein_id=WP_000239163.1;transl_table=11 NZ_CP010443.1 RefSeq gene 976602 977426 . - . ID=gene938;Name=SH04_RS04705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04705;old_locus_tag=SH04_04700 NZ_CP010443.1 Protein Homology CDS 976602 977426 . - 0 ID=cds903;Parent=gene938;Dbxref=Genbank:WP_001336393.1;Name=WP_001336393.1;gbkey=CDS;product=endopeptidase;protein_id=WP_001336393.1;transl_table=11 NZ_CP010443.1 RefSeq gene 977480 979198 . - . ID=gene939;Name=SH04_RS04710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04710;old_locus_tag=SH04_04705 NZ_CP010443.1 Protein Homology CDS 977480 979198 . - 0 ID=cds904;Parent=gene939;Dbxref=Genbank:WP_001260717.1;Name=WP_001260717.1;Note=catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro);gbkey=CDS;product=proline--tRNA ligase;protein_id=WP_001260717.1;transl_table=11 NZ_CP010443.1 RefSeq gene 979310 980017 . - . ID=gene940;Name=SH04_RS04715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04715;old_locus_tag=SH04_04710 NZ_CP010443.1 Protein Homology CDS 979310 980017 . - 0 ID=cds905;Parent=gene940;Dbxref=Genbank:WP_000094011.1;Name=WP_000094011.1;gbkey=CDS;product=tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA;protein_id=WP_000094011.1;transl_table=11 NZ_CP010443.1 RefSeq gene 980014 980418 . - . ID=gene941;Name=rcsF;gbkey=Gene;gene=rcsF;gene_biotype=protein_coding;locus_tag=SH04_RS04720;old_locus_tag=SH04_04715 NZ_CP010443.1 Protein Homology CDS 980014 980418 . - 0 ID=cds906;Parent=gene941;Dbxref=Genbank:WP_001202329.1;Name=WP_001202329.1;gbkey=CDS;gene=rcsF;product=hypothetical protein;protein_id=WP_001202329.1;transl_table=11 NZ_CP010443.1 RefSeq gene 980536 981351 . - . ID=gene942;Name=metQ;gbkey=Gene;gene=metQ;gene_biotype=protein_coding;locus_tag=SH04_RS04725;old_locus_tag=SH04_04720 NZ_CP010443.1 Protein Homology CDS 980536 981351 . - 0 ID=cds907;Parent=gene942;Dbxref=Genbank:WP_000874226.1;Name=WP_000874226.1;gbkey=CDS;gene=metQ;product=D-methionine-binding lipoprotein MetQ;protein_id=WP_000874226.1;transl_table=11 NZ_CP010443.1 RefSeq gene 981391 982044 . - . ID=gene943;Name=SH04_RS04730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04730;old_locus_tag=SH04_04725 NZ_CP010443.1 Protein Homology CDS 981391 982044 . - 0 ID=cds908;Parent=gene943;Dbxref=Genbank:WP_001294600.1;Name=WP_001294600.1;Note=part of the MetNIQ methionine uptake system;gbkey=CDS;product=methionine ABC transporter;protein_id=WP_001294600.1;transl_table=11 NZ_CP010443.1 RefSeq gene 982037 983068 . - . ID=gene944;Name=metN;gbkey=Gene;gene=metN;gene_biotype=protein_coding;locus_tag=SH04_RS04735;old_locus_tag=SH04_04730 NZ_CP010443.1 Protein Homology CDS 982037 983068 . - 0 ID=cds909;Parent=gene944;Dbxref=Genbank:WP_000594006.1;Name=WP_000594006.1;Note=part of the metNIQ transport system for methionine;gbkey=CDS;gene=metN;product=methionine import ATP-binding protein MetN;protein_id=WP_000594006.1;transl_table=11 NZ_CP010443.1 RefSeq gene 983256 983831 . + . ID=gene945;Name=SH04_RS04740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04740;old_locus_tag=SH04_04735 NZ_CP010443.1 Protein Homology CDS 983256 983831 . + 0 ID=cds910;Parent=gene945;Dbxref=Genbank:WP_001140187.1;Name=WP_001140187.1;Note=Converts the D-glycero-beta-D-manno-heptose 1%2C7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate;gbkey=CDS;product=D-glycero-beta-D-manno-heptose-1%2C7-bisphosphate 7-phosphatase;protein_id=WP_001140187.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 983888 989428 . + . ID=id55;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 984192 985747 . + . ID=gene946;Name=SH04_RS04745;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS04745;old_locus_tag=SH04_04740 NZ_CP010443.1 RefSeq rRNA 984192 985747 . + . ID=rna35;Parent=gene946;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010443.1 RefSeq exon 984192 985747 . + . ID=id56;Parent=rna35;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010443.1 RefSeq gene 985804 985880 . + . ID=gene947;Name=SH04_RS04750;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS04750;old_locus_tag=SH04_04745 NZ_CP010443.1 tRNAscan-SE tRNA 985804 985880 . + . ID=rna36;Parent=gene947;anticodon=(pos:985838..985840);gbkey=tRNA;product=tRNA-Ile NZ_CP010443.1 tRNAscan-SE exon 985804 985880 . + . ID=id57;Parent=rna36;anticodon=(pos:985838..985840);gbkey=tRNA;product=tRNA-Ile NZ_CP010443.1 RefSeq gene 985923 985998 . + . ID=gene948;Name=SH04_RS04755;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS04755;old_locus_tag=SH04_04750 NZ_CP010443.1 tRNAscan-SE tRNA 985923 985998 . + . ID=rna37;Parent=gene948;anticodon=(pos:985956..985958);gbkey=tRNA;product=tRNA-Ala NZ_CP010443.1 tRNAscan-SE exon 985923 985998 . + . ID=id58;Parent=rna37;anticodon=(pos:985956..985958);gbkey=tRNA;product=tRNA-Ala NZ_CP010443.1 RefSeq gene 986173 989102 . + . ID=gene949;Name=SH04_RS04760;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS04760;old_locus_tag=SH04_04755 NZ_CP010443.1 RefSeq rRNA 986173 989102 . + . ID=rna38;Parent=gene949;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010443.1 RefSeq exon 986173 989102 . + . ID=id59;Parent=rna38;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010443.1 RefSeq gene 989181 989296 . + . ID=gene950;Name=SH04_RS04765;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS04765;old_locus_tag=SH04_04760 NZ_CP010443.1 cmsearch rRNA 989181 989296 . + . ID=rna39;Parent=gene950;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 cmsearch exon 989181 989296 . + . ID=id60;Parent=rna39;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 RefSeq gene 989351 989427 . + . ID=gene951;Name=SH04_RS04770;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS04770;old_locus_tag=SH04_04765 NZ_CP010443.1 tRNAscan-SE tRNA 989351 989427 . + . ID=rna40;Parent=gene951;anticodon=(pos:989385..989387);gbkey=tRNA;product=tRNA-Asp NZ_CP010443.1 tRNAscan-SE exon 989351 989427 . + . ID=id61;Parent=rna40;anticodon=(pos:989385..989387);gbkey=tRNA;product=tRNA-Asp NZ_CP010443.1 RefSeq gene 989590 990393 . + . ID=gene952;Name=dkgB;gbkey=Gene;gene=dkgB;gene_biotype=protein_coding;locus_tag=SH04_RS04775;old_locus_tag=SH04_04770 NZ_CP010443.1 Protein Homology CDS 989590 990393 . + 0 ID=cds911;Parent=gene952;Dbxref=Genbank:WP_000997010.1;Name=WP_000997010.1;Note=catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid;gbkey=CDS;gene=dkgB;product=2%2C5-diketo-D-gluconic acid reductase B;protein_id=WP_000997010.1;transl_table=11 NZ_CP010443.1 RefSeq gene 990390 991304 . - . ID=gene953;Name=SH04_RS04780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04780;old_locus_tag=SH04_04775 NZ_CP010443.1 Protein Homology CDS 990390 991304 . - 0 ID=cds912;Parent=gene953;Dbxref=Genbank:WP_000648572.1;Name=WP_000648572.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000648572.1;transl_table=11 NZ_CP010443.1 RefSeq gene 991545 992345 . + . ID=gene954;Name=SH04_RS04785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04785;old_locus_tag=SH04_04780 NZ_CP010443.1 Protein Homology CDS 991545 992345 . + 0 ID=cds913;Parent=gene954;Dbxref=Genbank:WP_001230983.1;Name=WP_001230983.1;gbkey=CDS;product=endo/exonuclease/phosphatase;protein_id=WP_001230983.1;transl_table=11 NZ_CP010443.1 RefSeq gene 992349 992972 . + . ID=gene955;Name=SH04_RS04790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04790;old_locus_tag=SH04_04785 NZ_CP010443.1 Protein Homology CDS 992349 992972 . + 0 ID=cds914;Parent=gene955;Dbxref=Genbank:WP_000016007.1;Name=WP_000016007.1;gbkey=CDS;product=S-adenosyl-L-methionine-dependent methyltransferase;protein_id=WP_000016007.1;transl_table=11 NZ_CP010443.1 RefSeq gene 993020 994378 . - . ID=gene956;Name=mltD;gbkey=Gene;gene=mltD;gene_biotype=protein_coding;gene_synonym=dniR,yafG;locus_tag=SH04_RS04795;old_locus_tag=SH04_04790 NZ_CP010443.1 Protein Homology CDS 993020 994378 . - 0 ID=cds915;Parent=gene956;Dbxref=Genbank:WP_000644685.1;Name=WP_000644685.1;Note=catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues%3B may play a role in recycling muropeptides during cell division and/or cell elongation%3B in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall;gbkey=CDS;gene=mltD;product=murein transglycosylase;protein_id=WP_000644685.1;transl_table=11 NZ_CP010443.1 RefSeq gene 994450 995205 . - . ID=gene957;Name=SH04_RS04800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04800;old_locus_tag=SH04_04795 NZ_CP010443.1 Protein Homology CDS 994450 995205 . - 0 ID=cds916;Parent=gene957;Dbxref=Genbank:WP_001052715.1;Name=WP_001052715.1;Note=catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione%3B plays an important role in cellular detoxification using glutathione;gbkey=CDS;product=hydroxyacylglutathione hydrolase;protein_id=WP_001052715.1;transl_table=11 NZ_CP010443.1 RefSeq gene 995239 995961 . + . ID=gene958;Name=SH04_RS04805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04805;old_locus_tag=SH04_04800 NZ_CP010443.1 Protein Homology CDS 995239 995961 . + 0 ID=cds917;Parent=gene958;Dbxref=Genbank:WP_001326702.1;Name=WP_001326702.1;gbkey=CDS;product=S-adenosyl-L-methionine-dependent methyltransferase;protein_id=WP_001326702.1;transl_table=11 NZ_CP010443.1 RefSeq gene 995958 996425 . - . ID=gene959;Name=SH04_RS04810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04810;old_locus_tag=SH04_04805 NZ_CP010443.1 Protein Homology CDS 995958 996425 . - 0 ID=cds918;Parent=gene959;Dbxref=Genbank:WP_000917883.1;Name=WP_000917883.1;gbkey=CDS;product=ribonuclease HI%2C degrades RNA of DNA-RNA hybrids;protein_id=WP_000917883.1;transl_table=11 NZ_CP010443.1 RefSeq gene 996481 997221 . + . ID=gene960;Name=SH04_RS04815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04815;old_locus_tag=SH04_04810 NZ_CP010443.1 Protein Homology CDS 996481 997221 . + 0 ID=cds919;Parent=gene960;Dbxref=Genbank:WP_000126265.1;Name=WP_000126265.1;Note=3'-5' exonuclease of DNA polymerase III;gbkey=CDS;product=DNA polymerase III subunit epsilon;protein_id=WP_000126265.1;transl_table=11 NZ_CP010443.1 RefSeq gene 997354 997430 . + . ID=gene961;Name=SH04_RS04820;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS04820;old_locus_tag=SH04_04815 NZ_CP010443.1 tRNAscan-SE tRNA 997354 997430 . + . ID=rna41;Parent=gene961;anticodon=(pos:997388..997390);gbkey=tRNA;product=tRNA-Asp NZ_CP010443.1 tRNAscan-SE exon 997354 997430 . + . ID=id62;Parent=rna41;anticodon=(pos:997388..997390);gbkey=tRNA;product=tRNA-Asp NZ_CP010443.1 RefSeq gene 997758 998543 . + . ID=gene962;Name=SH04_RS04825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04825;old_locus_tag=SH04_04820 NZ_CP010443.1 Protein Homology CDS 997758 998543 . + 0 ID=cds920;Parent=gene962;Dbxref=Genbank:WP_001086141.1;Name=WP_001086141.1;gbkey=CDS;product=lipoprotein;protein_id=WP_001086141.1;transl_table=11 NZ_CP010443.1 RefSeq gene 998680 999159 . - . ID=gene963;Name=SH04_RS04830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04830;old_locus_tag=SH04_04825 NZ_CP010443.1 Protein Homology CDS 998680 999159 . - 0 ID=cds921;Parent=gene963;Dbxref=Genbank:WP_001236645.1;Name=WP_001236645.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001236645.1;transl_table=11 NZ_CP010443.1 RefSeq gene 999169 999507 . - . ID=gene964;Name=SH04_RS04835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04835;old_locus_tag=SH04_04830 NZ_CP010443.1 Protein Homology CDS 999169 999507 . - 0 ID=cds922;Parent=gene964;Dbxref=Genbank:WP_000093703.1;Name=WP_000093703.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000093703.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 999521 999800 . + . ID=id63;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 999559 999801 . + . ID=gene965;Name=SH04_RS04840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04840 NZ_CP010443.1 Protein Homology CDS 999559 999801 . + 0 ID=cds923;Parent=gene965;Dbxref=Genbank:WP_042404891.1;Name=WP_042404891.1;gbkey=CDS;product=transposase;protein_id=WP_042404891.1;transl_table=11 NZ_CP010443.1 RefSeq gene 999842 1000612 . - . ID=gene966;Name=SH04_RS04845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04845;old_locus_tag=SH04_04840 NZ_CP010443.1 Protein Homology CDS 999842 1000612 . - 0 ID=cds924;Parent=gene966;Dbxref=Genbank:WP_001118036.1;Name=WP_001118036.1;Note=NAD(P)-binding;gbkey=CDS;product=hydrolase YafV;protein_id=WP_001118036.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1000793 1001239 . + . ID=gene967;Name=SH04_RS04850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04850;old_locus_tag=SH04_04845 NZ_CP010443.1 Protein Homology CDS 1000793 1001239 . + 0 ID=cds925;Parent=gene967;Dbxref=Genbank:WP_001308392.1;Name=WP_001308392.1;Note=inactivates vertebrate C-type lysozyme;gbkey=CDS;product=hypothetical protein;protein_id=WP_001308392.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1001282 1003726 . - . ID=gene968;Name=fadE;gbkey=Gene;gene=fadE;gene_biotype=protein_coding;locus_tag=SH04_RS04855;old_locus_tag=SH04_04850 NZ_CP010443.1 Protein Homology CDS 1001282 1003726 . - 0 ID=cds926;Parent=gene968;Dbxref=Genbank:WP_000973083.1;Name=WP_000973083.1;Note=functions in fatty acid oxidation%3B converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA;gbkey=CDS;gene=fadE;product=acyl-CoA dehydrogenase;protein_id=WP_000973083.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1003966 1004544 . + . ID=gene969;Name=gmhA;gbkey=Gene;gene=gmhA;gene_biotype=protein_coding;locus_tag=SH04_RS04860;old_locus_tag=SH04_04855 NZ_CP010443.1 Protein Homology CDS 1003966 1004544 . + 0 ID=cds927;Parent=gene969;Dbxref=Genbank:WP_000284050.1;Name=WP_000284050.1;Note=catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate;gbkey=CDS;gene=gmhA;product=phosphoheptose isomerase;protein_id=WP_000284050.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1004750 1005517 . + . ID=gene970;Name=SH04_RS04865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04865;old_locus_tag=SH04_04860 NZ_CP010443.1 Protein Homology CDS 1004750 1005517 . + 0 ID=cds928;Parent=gene970;Dbxref=Genbank:WP_000333380.1;Name=WP_000333380.1;gbkey=CDS;product=glutamine amidotransferase;protein_id=WP_000333380.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1005488 1006228 . - . ID=gene971;Name=SH04_RS04870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04870;old_locus_tag=SH04_04865 NZ_CP010443.1 Protein Homology CDS 1005488 1006228 . - 0 ID=cds929;Parent=gene971;Dbxref=Genbank:WP_001225679.1;Name=WP_001225679.1;gbkey=CDS;product=transpeptidase;protein_id=WP_001225679.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1006384 1006662 . - . ID=gene972;Name=SH04_RS04875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04875;old_locus_tag=SH04_04870 NZ_CP010443.1 Protein Homology CDS 1006384 1006662 . - 0 ID=cds930;Parent=gene972;Dbxref=Genbank:WP_000615983.1;Name=WP_000615983.1;gbkey=CDS;product=mRNA interferase YafQ;protein_id=WP_000615983.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1006665 1006925 . - . ID=gene973;Name=SH04_RS04880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04880;old_locus_tag=SH04_04875 NZ_CP010443.1 Protein Homology CDS 1006665 1006925 . - 0 ID=cds931;Parent=gene973;Dbxref=Genbank:WP_000729703.1;Name=WP_000729703.1;Note=DNA-damage-inducible protein J%3B antitoxin of YafQ-DinJ toxin-antitoxin system;gbkey=CDS;product=antitoxin DinJ;protein_id=WP_000729703.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1007135 1007884 . + . ID=gene974;Name=SH04_RS04885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04885;old_locus_tag=SH04_04880 NZ_CP010443.1 Protein Homology CDS 1007135 1007884 . + 0 ID=cds932;Parent=gene974;Dbxref=Genbank:WP_000056849.1;Name=WP_000056849.1;gbkey=CDS;product=endopeptidase;protein_id=WP_000056849.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1008060 1008557 . + . ID=gene975;Name=SH04_RS04890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04890;old_locus_tag=SH04_04885 NZ_CP010443.1 Protein Homology CDS 1008060 1008557 . + 0 ID=cds933;Parent=gene975;Dbxref=Genbank:WP_000006255.1;Name=WP_000006255.1;gbkey=CDS;product=transposase;protein_id=WP_000006255.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1008781 1010520 . - . ID=gene976;Name=SH04_RS04895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04895;old_locus_tag=SH04_04890 NZ_CP010443.1 Protein Homology CDS 1008781 1010520 . - 0 ID=cds934;Parent=gene976;Dbxref=Genbank:WP_001334802.1;Name=WP_001334802.1;gbkey=CDS;product=flagellar biosynthesis protein FlhA;protein_id=WP_001334802.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1010480 1011250 . + . ID=gene977;Name=SH04_RS04900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04900;old_locus_tag=SH04_04895 NZ_CP010443.1 Protein Homology CDS 1010480 1011250 . + 0 ID=cds935;Parent=gene977;Dbxref=Genbank:WP_001333407.1;Name=WP_001333407.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001333407.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1011321 1012376 . + . ID=gene978;Name=SH04_RS04905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04905;old_locus_tag=SH04_04900 NZ_CP010443.1 Protein Homology CDS 1011321 1012376 . + 0 ID=cds936;Parent=gene978;Dbxref=Genbank:WP_001226164.1;Name=WP_001226164.1;Note=involved in translesion DNA polymerization with beta clamp of polymerase III%3B belongs to Y family of polymerases%3B does not contain proofreading function;gbkey=CDS;product=DNA polymerase IV;protein_id=WP_001226164.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1012428 1012721 . + . ID=gene979;Name=SH04_RS04910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04910;old_locus_tag=SH04_04905 NZ_CP010443.1 Protein Homology CDS 1012428 1012721 . + 0 ID=cds937;Parent=gene979;Dbxref=Genbank:WP_000554758.1;Name=WP_000554758.1;gbkey=CDS;product=antitoxin YafN;protein_id=WP_000554758.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1012724 1013122 . + . ID=gene980;Name=SH04_RS04915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04915;old_locus_tag=SH04_04910 NZ_CP010443.1 Protein Homology CDS 1012724 1013122 . + 0 ID=cds938;Parent=gene980;Dbxref=Genbank:WP_001263489.1;Name=WP_001263489.1;Note=YafO overproduction induces toxicity%3B it is believed to be the toxin of a toxin-antitoxin pair%3B unknown function;gbkey=CDS;product=mRNA interferase YafO;protein_id=WP_001263489.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1013210 1013584 . + . ID=gene981;Name=SH04_RS04920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04920;old_locus_tag=SH04_04915 NZ_CP010443.1 Protein Homology CDS 1013210 1013584 . + 0 ID=cds939;Parent=gene981;Dbxref=Genbank:WP_001310562.1;Name=WP_001310562.1;gbkey=CDS;product=acyltransferase;protein_id=WP_001310562.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1013761 1013889 . + . ID=id64;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1013890 1014156 . + . ID=gene982;Name=SH04_RS04925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04925;old_locus_tag=SH04_04920 NZ_CP010443.1 Protein Homology CDS 1013890 1014156 . + 0 ID=cds940;Parent=gene982;Dbxref=Genbank:WP_001295202.1;Name=WP_001295202.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295202.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1014068 1014625 . + . ID=gene983;Name=prfH;gbkey=Gene;gene=prfH;gene_biotype=protein_coding;locus_tag=SH04_RS04930;old_locus_tag=SH04_04925 NZ_CP010443.1 Protein Homology CDS 1014068 1014625 . + 0 ID=cds941;Parent=gene983;Dbxref=Genbank:WP_001352051.1;Name=WP_001352051.1;Note=similar to release factor 1 and 2;gbkey=CDS;gene=prfH;product=peptide chain release factor;protein_id=WP_001352051.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1014682 1016139 . - . ID=gene984;Name=SH04_RS04935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04935;old_locus_tag=SH04_04930 NZ_CP010443.1 Protein Homology CDS 1014682 1016139 . - 0 ID=cds942;Parent=gene984;Dbxref=Genbank:WP_001292994.1;Name=WP_001292994.1;Note=catalyzes the hydrolysis of Xaa-His dipeptides;gbkey=CDS;product=cytosol non-specific dipeptidase;protein_id=WP_001292994.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1016400 1016858 . + . ID=gene985;Name=SH04_RS04940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04940;old_locus_tag=SH04_04935 NZ_CP010443.1 Protein Homology CDS 1016400 1016858 . + 0 ID=cds943;Parent=gene985;Dbxref=Genbank:WP_001291990.1;Name=WP_001291990.1;Note=catalyzes the conversion of guanine%2C xanthine and%2C to a lesser extent%2C hypoxanthine to GMP%2C XMP and IMP%2C respectively;gbkey=CDS;product=xanthine phosphoribosyltransferase;protein_id=WP_001291990.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1016950 1018194 . + . ID=gene986;Name=frsA;gbkey=Gene;gene=frsA;gene_biotype=protein_coding;locus_tag=SH04_RS04945;old_locus_tag=SH04_04940 NZ_CP010443.1 Protein Homology CDS 1016950 1018194 . + 0 ID=cds944;Parent=gene986;Dbxref=Genbank:WP_000189532.1;Name=WP_000189532.1;Note=forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc%3B FrsA may promote fermentation;gbkey=CDS;gene=frsA;product=esterase;protein_id=WP_000189532.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1018252 1018653 . + . ID=gene987;Name=SH04_RS04950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04950;old_locus_tag=SH04_04945 NZ_CP010443.1 Protein Homology CDS 1018252 1018653 . + 0 ID=cds945;Parent=gene987;Dbxref=Genbank:WP_000174689.1;Name=WP_000174689.1;Note=involved in the expression of csgBA which is involved in curli formation%3B interacts with sigmaS;gbkey=CDS;product=sigma factor-binding protein Crl;protein_id=WP_000174689.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1018692 1019747 . - . ID=gene988;Name=SH04_RS04955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04955;old_locus_tag=SH04_04950 NZ_CP010443.1 Protein Homology CDS 1018692 1019747 . - 0 ID=cds946;Parent=gene988;Dbxref=Genbank:WP_000749863.1;Name=WP_000749863.1;gbkey=CDS;product=outer membrane pore protein E;protein_id=WP_000749863.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1020035 1021138 . + . ID=gene989;Name=SH04_RS04960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04960;old_locus_tag=SH04_04955 NZ_CP010443.1 Protein Homology CDS 1020035 1021138 . + 0 ID=cds947;Parent=gene989;Dbxref=Genbank:WP_001285288.1;Name=WP_001285288.1;gbkey=CDS;product=glutamate 5-kinase;protein_id=WP_001285288.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1021150 1022403 . + . ID=gene990;Name=SH04_RS04965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04965;old_locus_tag=SH04_04960 NZ_CP010443.1 Protein Homology CDS 1021150 1022403 . + 0 ID=cds948;Parent=gene990;Dbxref=Genbank:WP_000893278.1;Name=WP_000893278.1;gbkey=CDS;product=gamma-glutamyl phosphate reductase;protein_id=WP_000893278.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1022518 1022593 . + . ID=gene991;Name=SH04_RS04970;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS04970;old_locus_tag=SH04_04965 NZ_CP010443.1 tRNAscan-SE tRNA 1022518 1022593 . + . ID=rna42;Parent=gene991;anticodon=(pos:1022551..1022553);gbkey=tRNA;product=tRNA-Thr NZ_CP010443.1 tRNAscan-SE exon 1022518 1022593 . + . ID=id65;Parent=rna42;anticodon=(pos:1022551..1022553);gbkey=tRNA;product=tRNA-Thr NZ_CP010443.1 RefSeq gene 1022975 1023316 . - . ID=gene992;Name=SH04_RS04975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04975;old_locus_tag=SH04_04970 NZ_CP010443.1 Protein Homology CDS 1022975 1023316 . - 0 ID=cds949;Parent=gene992;Dbxref=Genbank:WP_000854672.1;Name=WP_000854672.1;gbkey=CDS;product=toxin YkfI;protein_id=WP_000854672.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1023337 1023654 . - . ID=gene993;Name=SH04_RS04980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04980;old_locus_tag=SH04_04975 NZ_CP010443.1 Protein Homology CDS 1023337 1023654 . - 0 ID=cds950;Parent=gene993;Dbxref=Genbank:WP_000070395.1;Name=WP_000070395.1;gbkey=CDS;product=antitoxin YafW;protein_id=WP_000070395.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1023903 1024379 . - . ID=gene994;Name=SH04_RS04985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04985;old_locus_tag=SH04_04980 NZ_CP010443.1 Protein Homology CDS 1023903 1024379 . - 0 ID=cds951;Parent=gene994;Dbxref=Genbank:WP_000811693.1;Name=WP_000811693.1;gbkey=CDS;product=UPF0758 protein YkfG;protein_id=WP_000811693.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1024395 1024853 . - . ID=gene995;Name=SH04_RS04990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04990;old_locus_tag=SH04_04985 NZ_CP010443.1 Protein Homology CDS 1024395 1024853 . - 0 ID=cds952;Parent=gene995;Dbxref=Genbank:WP_000211838.1;Name=WP_000211838.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000211838.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1024951 1025190 . - . ID=gene996;Name=SH04_RS04995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS04995;old_locus_tag=SH04_04990 NZ_CP010443.1 Protein Homology CDS 1024951 1025190 . - 0 ID=cds953;Parent=gene996;Dbxref=Genbank:WP_000194654.1;Name=WP_000194654.1;gbkey=CDS;product=UPF0401 protein YkfF;protein_id=WP_000194654.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1025267 1025734 . - . ID=gene997;Name=SH04_RS05000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05000;old_locus_tag=SH04_04995 NZ_CP010443.1 Protein Homology CDS 1025267 1025734 . - 0 ID=cds954;Parent=gene997;Dbxref=Genbank:WP_001547765.1;Name=WP_001547765.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001547765.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1025757 1026200 . - . ID=gene998;Name=SH04_RS05005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05005;old_locus_tag=SH04_05000 NZ_CP010443.1 Protein Homology CDS 1025757 1026200 . - 0 ID=cds955;Parent=gene998;Dbxref=Genbank:WP_000824223.1;Name=WP_000824223.1;gbkey=CDS;product=lipoprotein%2C inner membrane%3B degP regulator%3B CP4-6 prophage;protein_id=WP_000824223.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1026200 1026439 . - . ID=gene999;Name=SH04_RS05010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05010;old_locus_tag=SH04_05005 NZ_CP010443.1 Protein Homology CDS 1026200 1026439 . - 0 ID=cds956;Parent=gene999;Dbxref=Genbank:WP_032243554.1;Name=WP_032243554.1;gbkey=CDS;product=membrane protein;protein_id=WP_032243554.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1026831 1027652 . - . ID=gene1000;Name=SH04_RS05015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05015;old_locus_tag=SH04_05010 NZ_CP010443.1 Protein Homology CDS 1026831 1027652 . - 0 ID=cds957;Parent=gene1000;Dbxref=Genbank:WP_000197389.1;Name=WP_000197389.1;gbkey=CDS;product=UPF0380 protein YafZ;protein_id=WP_000197389.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1027744 1028607 . - . ID=gene1001;Name=SH04_RS05020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05020;old_locus_tag=SH04_05015 NZ_CP010443.1 Protein Homology CDS 1027744 1028607 . - 0 ID=cds958;Parent=gene1001;Dbxref=Genbank:WP_001065553.1;Name=WP_001065553.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001065553.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1028936 1029829 . - . ID=gene1002;Name=SH04_RS05025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05025;old_locus_tag=SH04_05020 NZ_CP010443.1 Protein Homology CDS 1028936 1029829 . - 0 ID=cds959;Parent=gene1002;Dbxref=Genbank:WP_000770246.1;Name=WP_000770246.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000770246.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1029925 1030293 . + . ID=gene1003;Name=SH04_RS05030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05030;old_locus_tag=SH04_05025 NZ_CP010443.1 Protein Homology CDS 1029925 1030293 . + 0 ID=cds960;Parent=gene1003;Dbxref=Genbank:WP_000747092.1;Name=WP_000747092.1;gbkey=CDS;product=transposase;protein_id=WP_000747092.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1030171 1031408 . + . ID=id66;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1030250 1031401 . + . ID=gene1004;Name=SH04_RS05035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05035;old_locus_tag=SH04_05030 NZ_CP010443.1 Protein Homology CDS 1030250 1031401 . + 0 ID=cds961;Parent=gene1004;Dbxref=Genbank:WP_001254938.1;Name=WP_001254938.1;gbkey=CDS;product=transposase;protein_id=WP_001254938.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1031477 1031902 . + . ID=gene1005;Name=SH04_RS05040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05040;old_locus_tag=SH04_05035 NZ_CP010443.1 Protein Homology CDS 1031477 1031902 . + 0 ID=cds962;Parent=gene1005;Dbxref=Genbank:WP_000212151.1;Name=WP_000212151.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_000212151.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1031832 1032200 . - . ID=gene1006;Name=SH04_RS05045;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS05045;partial=true;pseudo=true;start_range=.,1031832 NZ_CP010443.1 Protein Homology CDS 1031832 1032200 . - 0 ID=cds963;Parent=gene1006;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1031832;transl_table=11 NZ_CP010443.1 RefSeq gene 1032115 1032540 . - . ID=gene1007;Name=SH04_RS05050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05050;old_locus_tag=SH04_05045 NZ_CP010443.1 Protein Homology CDS 1032115 1032540 . - 0 ID=cds964;Parent=gene1007;Dbxref=Genbank:WP_001323220.1;Name=WP_001323220.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001323220.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1032509 1033638 . + . ID=gene1008;Name=SH04_RS05055;end_range=1033638,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS05055;partial=true;pseudo=true NZ_CP010443.1 Protein Homology CDS 1032509 1033638 . + 0 ID=cds965;Parent=gene1008;end_range=1033638,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1033595 1034796 . + . ID=id67;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1033748 1034728 . - . ID=gene1009;Name=SH04_RS05060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05060;old_locus_tag=SH04_05055 NZ_CP010443.1 Protein Homology CDS 1033748 1034728 . - 0 ID=cds966;Parent=gene1009;Dbxref=Genbank:WP_000019403.1;Name=WP_000019403.1;gbkey=CDS;product=transposase;protein_id=WP_000019403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1034972 1036375 . + . ID=gene1010;Name=SH04_RS05065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05065;old_locus_tag=SH04_05060 NZ_CP010443.1 Protein Homology CDS 1034972 1036375 . + 0 ID=cds967;Parent=gene1010;Dbxref=Genbank:WP_001393629.1;Name=WP_001393629.1;gbkey=CDS;product=S-methylmethionine permease;protein_id=WP_001393629.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1036362 1037294 . + . ID=gene1011;Name=SH04_RS05070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05070;old_locus_tag=SH04_05065 NZ_CP010443.1 Protein Homology CDS 1036362 1037294 . + 0 ID=cds968;Parent=gene1011;Dbxref=Genbank:WP_000081352.1;Name=WP_000081352.1;gbkey=CDS;product=homocysteine S-methyltransferase;protein_id=WP_000081352.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1037403 1038449 . - . ID=gene1012;Name=fbpC;gbkey=Gene;gene=fbpC;gene_biotype=protein_coding;locus_tag=SH04_RS05075;old_locus_tag=SH04_05070 NZ_CP010443.1 Protein Homology CDS 1037403 1038449 . - 0 ID=cds969;Parent=gene1012;Dbxref=Genbank:WP_000192349.1;Name=WP_000192349.1;Note=Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import;gbkey=CDS;gene=fbpC;product=Fe(3+) ions import ATP-binding protein FbpC;protein_id=WP_000192349.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1038461 1038823 . - . ID=gene1013;Name=SH04_RS05080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05080;old_locus_tag=SH04_05075 NZ_CP010443.1 GeneMarkS+ CDS 1038461 1038823 . - 0 ID=cds970;Parent=gene1013;Dbxref=Genbank:WP_001295711.1;Name=WP_001295711.1;gbkey=CDS;product=iron ABC transporter permease;protein_id=WP_001295711.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1038807 1039759 . + . ID=id68;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1038825 1039328 . - . ID=gene1014;Name=SH04_RS05085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05085;old_locus_tag=SH04_05080 NZ_CP010443.1 Protein Homology CDS 1038825 1039328 . - 0 ID=cds971;Parent=gene1014;Dbxref=Genbank:WP_001119292.1;Name=WP_001119292.1;gbkey=CDS;product=transposase;protein_id=WP_001119292.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1039247 1039522 . - . ID=gene1015;Name=SH04_RS05090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05090;old_locus_tag=SH04_05085 NZ_CP010443.1 Protein Homology CDS 1039247 1039522 . - 0 ID=cds972;Parent=gene1015;Dbxref=Genbank:WP_000179210.1;Name=WP_000179210.1;gbkey=CDS;product=repressor TnpA;protein_id=WP_000179210.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1039671 1040009 . - . ID=gene1016;Name=SH04_RS05095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05095;old_locus_tag=SH04_05090 NZ_CP010443.1 Protein Homology CDS 1039671 1040009 . - 0 ID=cds973;Parent=gene1016;Dbxref=Genbank:WP_000015532.1;Name=WP_000015532.1;gbkey=CDS;product=transposase;protein_id=WP_000015532.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1040032 1040382 . - . ID=gene1017;Name=SH04_RS05100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05100;old_locus_tag=SH04_05095 NZ_CP010443.1 Protein Homology CDS 1040032 1040382 . - 0 ID=cds974;Parent=gene1017;Dbxref=Genbank:WP_001030800.1;Name=WP_001030800.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001030800.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1040476 1041618 . - . ID=gene1018;Name=SH04_RS05105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05105;old_locus_tag=SH04_05100 NZ_CP010443.1 Protein Homology CDS 1040476 1041618 . - 0 ID=cds975;Parent=gene1018;Dbxref=Genbank:WP_001350483.1;Name=WP_001350483.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001350483.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1041925 1042833 . + . ID=gene1019;Name=SH04_RS05110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05110;old_locus_tag=SH04_05105 NZ_CP010443.1 Protein Homology CDS 1041925 1042833 . + 0 ID=cds976;Parent=gene1019;Dbxref=Genbank:WP_001136613.1;Name=WP_001136613.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001136613.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1042848 1044815 . + . ID=gene1020;Name=SH04_RS05115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05115;old_locus_tag=SH04_05110 NZ_CP010443.1 Protein Homology CDS 1042848 1044815 . + 0 ID=cds977;Parent=gene1020;Dbxref=Genbank:WP_000151261.1;Name=WP_000151261.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000151261.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1045042 1046424 . + . ID=gene1021;Name=SH04_RS05120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05120;old_locus_tag=SH04_05115 NZ_CP010443.1 Protein Homology CDS 1045042 1046424 . + 0 ID=cds978;Parent=gene1021;Dbxref=Genbank:WP_000192863.1;Name=WP_000192863.1;Note=uncharacterized member of the GPH family of galactose-pentose-hexuronide transporters;gbkey=CDS;product=hypothetical protein;protein_id=WP_000192863.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1046436 1048046 . + . ID=gene1022;Name=SH04_RS05125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05125;old_locus_tag=SH04_05120 NZ_CP010443.1 Protein Homology CDS 1046436 1048046 . + 0 ID=cds979;Parent=gene1022;Dbxref=Genbank:WP_000406871.1;Name=WP_000406871.1;gbkey=CDS;product=arabinosidase;protein_id=WP_000406871.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1048051 1048809 . - . ID=gene1023;Name=SH04_RS05130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05130;old_locus_tag=SH04_05125 NZ_CP010443.1 Protein Homology CDS 1048051 1048809 . - 0 ID=cds980;Parent=gene1023;Dbxref=Genbank:WP_001121657.1;Name=WP_001121657.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001121657.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1048948 1049952 . - . ID=gene1024;Name=SH04_RS05135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05135;old_locus_tag=SH04_05130 NZ_CP010443.1 Protein Homology CDS 1048948 1049952 . - 0 ID=cds981;Parent=gene1024;Dbxref=Genbank:WP_001281825.1;Name=WP_001281825.1;Note=catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway;gbkey=CDS;product=ornithine carbamoyltransferase chain F;protein_id=WP_001281825.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1050075 1051050 . + . ID=id69;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1050296 1050799 . - . ID=gene1025;Name=SH04_RS05140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05140;old_locus_tag=SH04_05135 NZ_CP010443.1 Protein Homology CDS 1050296 1050799 . - 0 ID=cds982;Parent=gene1025;Dbxref=Genbank:WP_001119292.1;Name=WP_001119292.1;gbkey=CDS;product=transposase;protein_id=WP_001119292.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1051147 1051878 . + . ID=gene1026;Name=SH04_RS05145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05145;old_locus_tag=SH04_05140 NZ_CP010443.1 Protein Homology CDS 1051147 1051878 . + 0 ID=cds983;Parent=gene1026;Dbxref=Genbank:WP_000388269.1;Name=WP_000388269.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000388269.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1051969 1052595 . - . ID=gene1027;Name=SH04_RS05150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05150;old_locus_tag=SH04_05145 NZ_CP010443.1 Protein Homology CDS 1051969 1052595 . - 0 ID=cds984;Parent=gene1027;Dbxref=Genbank:WP_000860996.1;Name=WP_000860996.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000860996.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1052867 1053565 . - . ID=gene1028;Name=SH04_RS05155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05155;old_locus_tag=SH04_05150 NZ_CP010443.1 Protein Homology CDS 1052867 1053565 . - 0 ID=cds985;Parent=gene1028;Dbxref=Genbank:WP_001214248.1;Name=WP_001214248.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001214248.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1053592 1054446 . - . ID=gene1029;Name=SH04_RS05160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05160;old_locus_tag=SH04_05155 NZ_CP010443.1 Protein Homology CDS 1053592 1054446 . - 0 ID=cds986;Parent=gene1029;Dbxref=Genbank:WP_000072039.1;Name=WP_000072039.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000072039.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1054565 1054789 . - . ID=gene1030;Name=SH04_RS05165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05165;old_locus_tag=SH04_05160 NZ_CP010443.1 Protein Homology CDS 1054565 1054789 . - 0 ID=cds987;Parent=gene1030;Dbxref=Genbank:WP_001272156.1;Name=WP_001272156.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001272156.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1054786 1055226 . - . ID=gene1031;Name=SH04_RS05170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05170;old_locus_tag=SH04_05165 NZ_CP010443.1 Protein Homology CDS 1054786 1055226 . - 0 ID=cds988;Parent=gene1031;Dbxref=Genbank:WP_000224818.1;Name=WP_000224818.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000224818.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1055343 1056668 . - . ID=gene1032;Name=SH04_RS05175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05175;old_locus_tag=SH04_05170 NZ_CP010443.1 Protein Homology CDS 1055343 1056668 . - 0 ID=cds989;Parent=gene1032;Dbxref=Genbank:WP_001218563.1;Name=WP_001218563.1;gbkey=CDS;product=preprotein translocase;protein_id=WP_001218563.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1056825 1056901 . + . ID=gene1033;Name=SH04_RS05180;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS05180;old_locus_tag=SH04_05175 NZ_CP010443.1 tRNAscan-SE tRNA 1056825 1056901 . + . ID=rna43;Parent=gene1033;anticodon=(pos:1056859..1056861);gbkey=tRNA;product=tRNA-Thr NZ_CP010443.1 tRNAscan-SE exon 1056825 1056901 . + . ID=id70;Parent=rna43;anticodon=(pos:1056859..1056861);gbkey=tRNA;product=tRNA-Thr NZ_CP010443.1 RefSeq gene 1057028 1057438 . - . ID=gene1034;Name=SH04_RS05185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05185;old_locus_tag=SH04_05180 NZ_CP010443.1 Protein Homology CDS 1057028 1057438 . - 0 ID=cds990;Parent=gene1034;Dbxref=Genbank:WP_001111342.1;Name=WP_001111342.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001111342.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1057417 1058373 . - . ID=gene1035;Name=SH04_RS05190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05190;old_locus_tag=SH04_05185 NZ_CP010443.1 Protein Homology CDS 1057417 1058373 . - 0 ID=cds991;Parent=gene1035;Dbxref=Genbank:WP_000121359.1;Name=WP_000121359.1;gbkey=CDS;product=moco insertion factor for PaoABC aldehyde oxidoreductase;protein_id=WP_000121359.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1058383 1060581 . - . ID=gene1036;Name=SH04_RS05195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05195;old_locus_tag=SH04_05190 NZ_CP010443.1 Protein Homology CDS 1058383 1060581 . - 0 ID=cds992;Parent=gene1036;Dbxref=Genbank:WP_000667026.1;Name=WP_000667026.1;gbkey=CDS;product=PaoABC aldehyde oxidoreductase Moco-containing subunit;protein_id=WP_000667026.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1060578 1061534 . - . ID=gene1037;Name=SH04_RS05200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05200;old_locus_tag=SH04_05195 NZ_CP010443.1 Protein Homology CDS 1060578 1061534 . - 0 ID=cds993;Parent=gene1037;Dbxref=Genbank:WP_000643333.1;Name=WP_000643333.1;gbkey=CDS;product=PaoABC aldehyde oxidoreductase FAD-containing subunit;protein_id=WP_000643333.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1061531 1062220 . - . ID=gene1038;Name=SH04_RS05205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05205;old_locus_tag=SH04_05200 NZ_CP010443.1 Protein Homology CDS 1061531 1062220 . - 0 ID=cds994;Parent=gene1038;Dbxref=Genbank:WP_000070700.1;Name=WP_000070700.1;gbkey=CDS;product=PaoABC aldehyde oxidoreductase 2Fe-2S subunit;protein_id=WP_000070700.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1062638 1063252 . + . ID=gene1039;Name=SH04_RS05210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05210;old_locus_tag=SH04_05205 NZ_CP010443.1 Protein Homology CDS 1062638 1063252 . + 0 ID=cds995;Parent=gene1039;Dbxref=Genbank:WP_001019920.1;Name=WP_001019920.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001019920.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1063500 1063829 . - . ID=gene1040;Name=SH04_RS05215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05215;old_locus_tag=SH04_05210 NZ_CP010443.1 Protein Homology CDS 1063500 1063829 . - 0 ID=cds996;Parent=gene1040;Dbxref=Genbank:WP_001303809.1;Name=WP_001303809.1;gbkey=CDS;product=ferredoxin;protein_id=WP_001303809.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1064142 1064852 . - . ID=gene1041;Name=SH04_RS05220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05220;old_locus_tag=SH04_05215 NZ_CP010443.1 Protein Homology CDS 1064142 1064852 . - 0 ID=cds997;Parent=gene1041;Dbxref=Genbank:WP_001350485.1;Name=WP_001350485.1;gbkey=CDS;product=fimbrial chaperone EcpE;protein_id=WP_001350485.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1064821 1066464 . - . ID=gene1042;Name=SH04_RS05225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05225;old_locus_tag=SH04_05220 NZ_CP010443.1 Protein Homology CDS 1064821 1066464 . - 0 ID=cds998;Parent=gene1042;Dbxref=Genbank:WP_001310578.1;Name=WP_001310578.1;gbkey=CDS;product=fimbria adhesin EcpD;protein_id=WP_001310578.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1066454 1068979 . - . ID=gene1043;Name=SH04_RS05230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05230;old_locus_tag=SH04_05225 NZ_CP010443.1 Protein Homology CDS 1066454 1068979 . - 0 ID=cds999;Parent=gene1043;Dbxref=Genbank:WP_001131096.1;Name=WP_001131096.1;gbkey=CDS;product=usher protein EcpC;protein_id=WP_001131096.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1069005 1069673 . - . ID=gene1044;Name=SH04_RS05235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05235;old_locus_tag=SH04_05230 NZ_CP010443.1 Protein Homology CDS 1069005 1069673 . - 0 ID=cds1000;Parent=gene1044;Dbxref=Genbank:WP_000716398.1;Name=WP_000716398.1;gbkey=CDS;product=fimbrial chaperone EcpB;protein_id=WP_000716398.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1069731 1070318 . - . ID=gene1045;Name=SH04_RS05240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05240;old_locus_tag=SH04_05235 NZ_CP010443.1 Protein Homology CDS 1069731 1070318 . - 0 ID=cds1001;Parent=gene1045;Dbxref=Genbank:WP_000730972.1;Name=WP_000730972.1;gbkey=CDS;product=common pilus major fimbrillin subunit EcpA;protein_id=WP_000730972.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1070393 1070935 . - . ID=gene1046;Name=SH04_RS05245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05245;old_locus_tag=SH04_05240 NZ_CP010443.1 Protein Homology CDS 1070393 1070935 . - 0 ID=cds1002;Parent=gene1046;Dbxref=Genbank:WP_001301257.1;Name=WP_001301257.1;gbkey=CDS;product=LuxR family transcriptional regulator;protein_id=WP_001301257.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1071759 1071986 . + . ID=gene1047;Name=SH04_RS05250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05250;old_locus_tag=SH04_05245 NZ_CP010443.1 Protein Homology CDS 1071759 1071986 . + 0 ID=cds1003;Parent=gene1047;Dbxref=Genbank:WP_001147279.1;Name=WP_001147279.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001147279.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1072021 1072161 . - . ID=gene1048;Name=rpmJ;gbkey=Gene;gene=rpmJ;gene_biotype=protein_coding;locus_tag=SH04_RS05255;old_locus_tag=SH04_05250 NZ_CP010443.1 Protein Homology CDS 1072021 1072161 . - 0 ID=cds1004;Parent=gene1048;Dbxref=Genbank:WP_000866436.1;Name=WP_000866436.1;Note=smallest protein in the large subunit%3B similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc%3B the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion%3B the proteins in this group do not have the motif;gbkey=CDS;gene=rpmJ;product=50S ribosomal protein L36;protein_id=WP_000866436.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1072161 1072424 . - . ID=gene1049;Name=SH04_RS05260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05260;old_locus_tag=SH04_05255 NZ_CP010443.1 Protein Homology CDS 1072161 1072424 . - 0 ID=cds1005;Parent=gene1049;Dbxref=Genbank:WP_000803998.1;Name=WP_000803998.1;gbkey=CDS;product=50S ribosomal protein L31 type B;protein_id=WP_000803998.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1072788 1072889 . - . ID=gene1050;Name=SH04_RS05265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05265;old_locus_tag=SH04_05260 NZ_CP010443.1 Protein Homology CDS 1072788 1072889 . - 0 ID=cds1006;Parent=gene1050;Dbxref=Genbank:WP_000662258.1;Name=WP_000662258.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000662258.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1074004 1074891 . + . ID=gene1051;Name=SH04_RS05270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05270;old_locus_tag=SH04_05265 NZ_CP010443.1 Protein Homology CDS 1074004 1074891 . + 0 ID=cds1007;Parent=gene1051;Dbxref=Genbank:WP_000020224.1;Name=WP_000020224.1;gbkey=CDS;product=attachment protein;protein_id=WP_000020224.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1074876 1076130 . + . ID=id71;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1074938 1075237 . + . ID=gene1052;Name=SH04_RS05275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05275;old_locus_tag=SH04_05270 NZ_CP010443.1 Protein Homology CDS 1074938 1075237 . + 0 ID=cds1008;Parent=gene1052;Dbxref=Genbank:WP_000169527.1;Name=WP_000169527.1;gbkey=CDS;product=transposase;protein_id=WP_000169527.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1075234 1076100 . + . ID=gene1053;Name=SH04_RS05280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05280;old_locus_tag=SH04_05275 NZ_CP010443.1 Protein Homology CDS 1075234 1076100 . + 0 ID=cds1009;Parent=gene1053;Dbxref=Genbank:WP_000878218.1;Name=WP_000878218.1;gbkey=CDS;product=transposase;protein_id=WP_000878218.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1076097 1076783 . - . ID=gene1054;Name=SH04_RS05285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05285;old_locus_tag=SH04_05280 NZ_CP010443.1 Protein Homology CDS 1076097 1076783 . - 0 ID=cds1010;Parent=gene1054;Dbxref=Genbank:WP_000621011.1;Name=WP_000621011.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000621011.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1077373 1077966 . - . ID=gene1055;Name=SH04_RS05290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05290;old_locus_tag=SH04_05285 NZ_CP010443.1 Protein Homology CDS 1077373 1077966 . - 0 ID=cds1011;Parent=gene1055;Dbxref=Genbank:WP_001299021.1;Name=WP_001299021.1;gbkey=CDS;product=protein RclC;protein_id=WP_001299021.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1077978 1078214 . - . ID=gene1056;Name=SH04_RS05295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05295;old_locus_tag=SH04_05290 NZ_CP010443.1 Protein Homology CDS 1077978 1078214 . - 0 ID=cds1012;Parent=gene1056;Dbxref=Genbank:WP_000474084.1;Name=WP_000474084.1;gbkey=CDS;product=reactive chlorine species (RCS) stress resistance periplasmic protein;protein_id=WP_000474084.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1078323 1079648 . - . ID=gene1057;Name=SH04_RS05300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05300;old_locus_tag=SH04_05295 NZ_CP010443.1 Protein Homology CDS 1078323 1079648 . - 0 ID=cds1013;Parent=gene1057;Dbxref=Genbank:WP_001046307.1;Name=WP_001046307.1;Note=Involved in disulfide oxidoreductase activity and electron transport;gbkey=CDS;product=pyridine nucleotide-disulfide oxidoreductase;protein_id=WP_001046307.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1079874 1080728 . + . ID=gene1058;Name=SH04_RS05305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05305;old_locus_tag=SH04_05300 NZ_CP010443.1 Protein Homology CDS 1079874 1080728 . + 0 ID=cds1014;Parent=gene1058;Dbxref=Genbank:WP_000339594.1;Name=WP_000339594.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000339594.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1081255 1081974 . + . ID=gene1059;Name=SH04_RS05310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05310;old_locus_tag=SH04_05305 NZ_CP010443.1 Protein Homology CDS 1081255 1081974 . + 0 ID=cds1015;Parent=gene1059;Dbxref=Genbank:WP_001102108.1;Name=WP_001102108.1;gbkey=CDS;product=cysteine-rich LutA family protein%3B electron transport chain YkgEFG component;protein_id=WP_001102108.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1081985 1083412 . + . ID=gene1060;Name=SH04_RS05315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05315;old_locus_tag=SH04_05310 NZ_CP010443.1 Protein Homology CDS 1081985 1083412 . + 0 ID=cds1016;Parent=gene1060;Dbxref=Genbank:WP_000023927.1;Name=WP_000023927.1;gbkey=CDS;product=ferridoxin-like LutB family protein%3B electron transport chain YkgEFG component;protein_id=WP_000023927.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1083405 1084100 . + . ID=gene1061;Name=SH04_RS05320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05320;old_locus_tag=SH04_05315 NZ_CP010443.1 Protein Homology CDS 1083405 1084100 . + 0 ID=cds1017;Parent=gene1061;Dbxref=Genbank:WP_000370307.1;Name=WP_000370307.1;gbkey=CDS;product=LutC family protein%3B electron transport chain YkgEFG component;protein_id=WP_000370307.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1084174 1084296 . - . ID=gene1062;Name=SH04_RS05325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05325;old_locus_tag=SH04_05320 NZ_CP010443.1 Protein Homology CDS 1084174 1084296 . - 0 ID=cds1018;Parent=gene1062;Dbxref=Genbank:WP_001301262.1;Name=WP_001301262.1;gbkey=CDS;product=universal stress protein;protein_id=WP_001301262.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1084343 1085011 . - . ID=gene1063;Name=SH04_RS05330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05330;old_locus_tag=SH04_05325 NZ_CP010443.1 Protein Homology CDS 1084343 1085011 . - 0 ID=cds1019;Parent=gene1063;Dbxref=Genbank:WP_001209100.1;Name=WP_001209100.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001209100.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1085224 1086894 . - . ID=gene1064;Name=SH04_RS05335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05335;old_locus_tag=SH04_05330 NZ_CP010443.1 Protein Homology CDS 1085224 1086894 . - 0 ID=cds1020;Parent=gene1064;Dbxref=Genbank:WP_001159094.1;Name=WP_001159094.1;Note=catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine;gbkey=CDS;product=oxygen-dependent choline dehydrogenase;protein_id=WP_001159094.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1086908 1088380 . - . ID=gene1065;Name=SH04_RS05340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05340;old_locus_tag=SH04_05335 NZ_CP010443.1 Protein Homology CDS 1086908 1088380 . - 0 ID=cds1021;Parent=gene1065;Dbxref=Genbank:WP_000089110.1;Name=WP_000089110.1;gbkey=CDS;product=NAD/NADP-dependent betaine aldehyde dehydrogenase;protein_id=WP_000089110.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1088394 1088981 . - . ID=gene1066;Name=SH04_RS05345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05345;old_locus_tag=SH04_05340 NZ_CP010443.1 Protein Homology CDS 1088394 1088981 . - 0 ID=cds1022;Parent=gene1066;Dbxref=Genbank:WP_001335745.1;Name=WP_001335745.1;Note=HTH-type%3B bet1%3B Repressor involved in choline regulation of the bet genes;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001335745.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1089110 1091143 . + . ID=gene1067;Name=SH04_RS05350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05350;old_locus_tag=SH04_05345 NZ_CP010443.1 Protein Homology CDS 1089110 1091143 . + 0 ID=cds1023;Parent=gene1067;Dbxref=Genbank:WP_000131044.1;Name=WP_000131044.1;Note=proton-motive-force-driven choline transporter;gbkey=CDS;product=choline transporter;protein_id=WP_000131044.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1091513 1091698 . - . ID=gene1068;Name=SH04_RS05355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05355;old_locus_tag=SH04_05350 NZ_CP010443.1 Protein Homology CDS 1091513 1091698 . - 0 ID=cds1024;Parent=gene1068;Dbxref=Genbank:WP_001323767.1;Name=WP_001323767.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001323767.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1092018 1093106 . + . ID=gene1069;Name=SH04_RS05360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05360;old_locus_tag=SH04_05355 NZ_CP010443.1 Protein Homology CDS 1092018 1093106 . + 0 ID=cds1025;Parent=gene1069;Dbxref=Genbank:WP_001301264.1;Name=WP_001301264.1;gbkey=CDS;product=cyclic di-GMP phosphodiesterase YahA;protein_id=WP_001301264.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1093148 1094080 . - . ID=gene1070;Name=SH04_RS05365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05365;old_locus_tag=SH04_05360 NZ_CP010443.1 Protein Homology CDS 1093148 1094080 . - 0 ID=cds1026;Parent=gene1070;Dbxref=Genbank:WP_001084394.1;Name=WP_001084394.1;gbkey=CDS;product=DNA-bindng transcriptional regulator;protein_id=WP_001084394.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1094172 1094669 . - . ID=gene1071;Name=SH04_RS05370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05370;old_locus_tag=SH04_05365 NZ_CP010443.1 Protein Homology CDS 1094172 1094669 . - 0 ID=cds1027;Parent=gene1071;Dbxref=Genbank:WP_001013892.1;Name=WP_001013892.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001013892.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1094927 1095532 . + . ID=gene1072;Name=SH04_RS05375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05375;old_locus_tag=SH04_05370 NZ_CP010443.1 Protein Homology CDS 1094927 1095532 . + 0 ID=cds1028;Parent=gene1072;Dbxref=Genbank:WP_000023635.1;Name=WP_000023635.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000023635.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1095572 1096435 . + . ID=gene1073;Name=SH04_RS05380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05380;old_locus_tag=SH04_05375 NZ_CP010443.1 Protein Homology CDS 1095572 1096435 . + 0 ID=cds1029;Parent=gene1073;Dbxref=Genbank:WP_001310582.1;Name=WP_001310582.1;gbkey=CDS;product=DUF2877 domain-containing protein;protein_id=WP_001310582.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1096425 1097972 . + . ID=gene1074;Name=SH04_RS05385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05385;old_locus_tag=SH04_05380 NZ_CP010443.1 Protein Homology CDS 1096425 1097972 . + 0 ID=cds1030;Parent=gene1074;Dbxref=Genbank:WP_000111836.1;Name=WP_000111836.1;gbkey=CDS;product=NAD(P)-binding succinyl-CoA synthase;protein_id=WP_000111836.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1097972 1099390 . + . ID=gene1075;Name=SH04_RS05390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05390;old_locus_tag=SH04_05385 NZ_CP010443.1 Protein Homology CDS 1097972 1099390 . + 0 ID=cds1031;Parent=gene1075;Dbxref=Genbank:WP_000083429.1;Name=WP_000083429.1;gbkey=CDS;product=DUF1116 domain-containing protein;protein_id=WP_000083429.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1099362 1099643 . + . ID=gene1076;Name=SH04_RS05395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05395 NZ_CP010443.1 Protein Homology CDS 1099362 1099643 . + 0 ID=cds1032;Parent=gene1076;Dbxref=Genbank:WP_046377548.1;Name=WP_046377548.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_046377548.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1099403 1099669 . + . ID=id72;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1099719 1100669 . + . ID=gene1077;Name=SH04_RS05400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05400;old_locus_tag=SH04_05395 NZ_CP010443.1 Protein Homology CDS 1099719 1100669 . + 0 ID=cds1033;Parent=gene1077;Dbxref=Genbank:WP_000661672.1;Name=WP_000661672.1;gbkey=CDS;product=carbamate kinase-like protein YahI;protein_id=WP_000661672.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1100679 1102061 . + . ID=gene1078;Name=SH04_RS05405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05405;old_locus_tag=SH04_05400 NZ_CP010443.1 Protein Homology CDS 1100679 1102061 . + 0 ID=cds1034;Parent=gene1078;Dbxref=Genbank:WP_000665120.1;Name=WP_000665120.1;Note=metallo-dependent hydrolase superfamily%3B deaminase with metallo-dependent hydrolase domain;gbkey=CDS;product=metallo-dependent hydrolase domain deaminase;protein_id=WP_000665120.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1102438 1103487 . + . ID=gene1079;Name=SH04_RS05410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05410;old_locus_tag=SH04_05405 NZ_CP010443.1 Protein Homology CDS 1102438 1103487 . + 0 ID=cds1035;Parent=gene1079;Dbxref=Genbank:WP_000692754.1;Name=WP_000692754.1;gbkey=CDS;product=aldehyde reductase YahK;protein_id=WP_000692754.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1103730 1104545 . + . ID=gene1080;Name=SH04_RS05415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05415;old_locus_tag=SH04_05410 NZ_CP010443.1 Protein Homology CDS 1103730 1104545 . + 0 ID=cds1036;Parent=gene1080;Dbxref=Genbank:WP_001301260.1;Name=WP_001301260.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001301260.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1104958 1105203 . + . ID=gene1081;Name=SH04_RS05420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05420;old_locus_tag=SH04_05415 NZ_CP010443.1 Protein Homology CDS 1104958 1105203 . + 0 ID=cds1037;Parent=gene1081;Dbxref=Genbank:WP_000290616.1;Name=WP_000290616.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000290616.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1105220 1105852 . - . ID=gene1082;Name=SH04_RS05425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05425;old_locus_tag=SH04_05420 NZ_CP010443.1 Protein Homology CDS 1105220 1105852 . - 0 ID=cds1038;Parent=gene1082;Dbxref=Genbank:WP_001299549.1;Name=WP_001299549.1;gbkey=CDS;product=membrane protein;protein_id=WP_001299549.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1106038 1106313 . + . ID=gene1083;Name=SH04_RS05430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05430;old_locus_tag=SH04_05425 NZ_CP010443.1 Protein Homology CDS 1106038 1106313 . + 0 ID=cds1039;Parent=gene1083;Dbxref=Genbank:WP_000691956.1;Name=WP_000691956.1;gbkey=CDS;product=periplasmic protein%2C function unknown%2C YhcN family;protein_id=WP_000691956.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1106411 1107997 . - . ID=gene1084;Name=SH04_RS05435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05435;old_locus_tag=SH04_05430 NZ_CP010443.1 Protein Homology CDS 1106411 1107997 . - 0 ID=cds1040;Parent=gene1084;Dbxref=Genbank:WP_000941041.1;Name=WP_000941041.1;Note=sigma-54 dependent activator family protein%3B activates the prpBCDE operon;gbkey=CDS;product=propionate catabolism operon regulatory protein PrpR;protein_id=WP_000941041.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1108236 1109126 . + . ID=gene1085;Name=prpB;gbkey=Gene;gene=prpB;gene_biotype=protein_coding;locus_tag=SH04_RS05440;old_locus_tag=SH04_05435 NZ_CP010443.1 Protein Homology CDS 1108236 1109126 . + 0 ID=cds1041;Parent=gene1085;Dbxref=Genbank:WP_000052206.1;Name=WP_000052206.1;Note=catalyzes the formation of pyruvate and succinate from 2-methylisocitrate;gbkey=CDS;gene=prpB;product=methylisocitrate lyase;protein_id=WP_000052206.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1109154 1109526 . + . ID=id73;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1109566 1110735 . + . ID=gene1086;Name=SH04_RS05445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05445;old_locus_tag=SH04_05440 NZ_CP010443.1 Protein Homology CDS 1109566 1110735 . + 0 ID=cds1042;Parent=gene1086;Dbxref=Genbank:WP_001285927.1;Name=WP_001285927.1;Note=catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate%3B also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity;gbkey=CDS;product=2-methylcitrate synthase;protein_id=WP_001285927.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1110769 1112220 . + . ID=gene1087;Name=prpD;gbkey=Gene;gene=prpD;gene_biotype=pseudogene;gene_synonym=mmgE;locus_tag=SH04_RS05450;pseudo=true NZ_CP010443.1 Protein Homology CDS 1110769 1112220 . + 0 ID=cds1043;Parent=gene1087;Note=functions in propionate metabolism%3B involved in isomerization of (2S%2C3S)-methylcitrate to (2R%2C3S)-methylisocitrate%3B also encodes minor aconitase or dehydratase activity%3B aconitase C;gbkey=CDS;gene=prpD;product=2-methylcitrate dehydratase;pseudo=true;transl_except=(pos:1112020..1112022%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 1112260 1114146 . + . ID=gene1088;Name=prpE;gbkey=Gene;gene=prpE;gene_biotype=protein_coding;gene_synonym=yahU;locus_tag=SH04_RS05455;old_locus_tag=SH04_05450 NZ_CP010443.1 Protein Homology CDS 1112260 1114146 . + 0 ID=cds1044;Parent=gene1088;Dbxref=Genbank:WP_000010288.1;Name=WP_000010288.1;Note=catalyzes the formation of propionyl-CoA using propionate as a substrate%3B PrpE from Ralstonia solanacearum can produce acetyl-%2C propionyl-%2C butyryl- and acrylyl-coenzyme A%2C and Salmonella enterica produces propionyl- and butyryl-coenzyme A%3B not expressed in Escherichia coli when grown on propionate/minimal media%3B ATP-dependent;gbkey=CDS;gene=prpE;product=propionate--CoA ligase;protein_id=WP_000010288.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1114476 1115735 . + . ID=gene1089;Name=codB;gbkey=Gene;gene=codB;gene_biotype=protein_coding;locus_tag=SH04_RS05460;old_locus_tag=SH04_05455 NZ_CP010443.1 Protein Homology CDS 1114476 1115735 . + 0 ID=cds1045;Parent=gene1089;Dbxref=Genbank:WP_000076233.1;Name=WP_000076233.1;gbkey=CDS;gene=codB;product=cytosine permease;protein_id=WP_000076233.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1115725 1117008 . + . ID=gene1090;Name=SH04_RS05465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05465;old_locus_tag=SH04_05460 NZ_CP010443.1 Protein Homology CDS 1115725 1117008 . + 0 ID=cds1046;Parent=gene1090;Dbxref=Genbank:WP_001301240.1;Name=WP_001301240.1;Note=Catalyzes the deamination of cytosine to uracil and ammonia;gbkey=CDS;product=cytosine deaminase;protein_id=WP_001301240.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1117030 1117228 . + . ID=id74;gbkey=repeat_region NZ_CP010443.1 RefSeq repeat_region 1117230 1117428 . + . ID=id75;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1117345 1118244 . - . ID=gene1091;Name=SH04_RS05470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05470;old_locus_tag=SH04_05465 NZ_CP010443.1 Protein Homology CDS 1117345 1118244 . - 0 ID=cds1047;Parent=gene1091;Dbxref=Genbank:WP_000952503.1;Name=WP_000952503.1;Note=controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000952503.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1118353 1119012 . + . ID=gene1092;Name=SH04_RS05475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05475;old_locus_tag=SH04_05470 NZ_CP010443.1 Protein Homology CDS 1118353 1119012 . + 0 ID=cds1048;Parent=gene1092;Dbxref=Genbank:WP_000658652.1;Name=WP_000658652.1;gbkey=CDS;product=carbonic anhydrase;protein_id=WP_000658652.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1119043 1119513 . + . ID=gene1093;Name=SH04_RS05480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05480;old_locus_tag=SH04_05475 NZ_CP010443.1 Protein Homology CDS 1119043 1119513 . + 0 ID=cds1049;Parent=gene1093;Dbxref=Genbank:WP_000616243.1;Name=WP_000616243.1;gbkey=CDS;product=cyanate hydratase;protein_id=WP_000616243.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1119519 1120700 . + . ID=gene1094;Name=cynX;gbkey=Gene;gene=cynX;gene_biotype=protein_coding;locus_tag=SH04_RS05485;old_locus_tag=SH04_05480 NZ_CP010443.1 Protein Homology CDS 1119519 1120700 . + 0 ID=cds1050;Parent=gene1094;Dbxref=Genbank:WP_001301263.1;Name=WP_001301263.1;Note=MFS transporter family member induced in the presence of cyanate as part of a 3 gene operon%3B not essential;gbkey=CDS;gene=cynX;product=MFS transporter;protein_id=WP_001301263.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1120803 1121414 . - . ID=gene1095;Name=lacA;gbkey=Gene;gene=lacA;gene_biotype=protein_coding;locus_tag=SH04_RS05490;old_locus_tag=SH04_05485 NZ_CP010443.1 Protein Homology CDS 1120803 1121414 . - 0 ID=cds1051;Parent=gene1095;Dbxref=Genbank:WP_001335915.1;Name=WP_001335915.1;Note=transfers acetyl group from acetyl-CoA to the 6-hydroxyl of galactopyranosides%3B exact physiological role is unknown;gbkey=CDS;gene=lacA;product=galactoside O-acetyltransferase;protein_id=WP_001335915.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1121480 1122733 . - . ID=gene1096;Name=lacY;gbkey=Gene;gene=lacY;gene_biotype=protein_coding;locus_tag=SH04_RS05495;old_locus_tag=SH04_05490 NZ_CP010443.1 Protein Homology CDS 1121480 1122733 . - 0 ID=cds1052;Parent=gene1096;Dbxref=Genbank:WP_000291549.1;Name=WP_000291549.1;Note=lactose/proton symporter%3B mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides%3B member of major facilitator superfamily%3B functions as a monomer with 12 transmembrane segments;gbkey=CDS;gene=lacY;product=lactose permease;protein_id=WP_000291549.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1122785 1125859 . - . ID=gene1097;Name=lacZ;gbkey=Gene;gene=lacZ;gene_biotype=protein_coding;locus_tag=SH04_RS05500;old_locus_tag=SH04_05495 NZ_CP010443.1 Protein Homology CDS 1122785 1125859 . - 0 ID=cds1053;Parent=gene1097;Dbxref=Genbank:WP_000177906.1;Name=WP_000177906.1;Note=forms a homotetramer%3B hydrolyzes lactose disaccharide to galactose and glucose%3B converts lactose to allolactose which is the natural inducer of the lac operon;gbkey=CDS;gene=lacZ;product=beta-galactosidase;protein_id=WP_000177906.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1125982 1126941 . - . ID=gene1098;Name=lacI;gbkey=Gene;gene=lacI;gene_biotype=protein_coding;locus_tag=SH04_RS05505;old_locus_tag=SH04_05500 NZ_CP010443.1 Protein Homology CDS 1125982 1126941 . - 0 ID=cds1054;Parent=gene1098;Dbxref=Genbank:WP_014640691.1;Name=WP_014640691.1;Note=transcriptional repressor of lac operon%3B forms a homotetramer as a dimer of dimers%3B binds specific sites in lac operon resulting in DNA looping between the operators%3B binds allolactose as inducer;gbkey=CDS;gene=lacI;product=lac repressor;protein_id=WP_014640691.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1127141 1127974 . - . ID=gene1099;Name=SH04_RS05510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05510;old_locus_tag=SH04_05505 NZ_CP010443.1 Protein Homology CDS 1127141 1127974 . - 0 ID=cds1055;Parent=gene1099;Dbxref=Genbank:WP_001301325.1;Name=WP_001301325.1;Note=activator of 3-phenylpropionic acid catabolism;gbkey=CDS;product=mhp operon transcriptional activator;protein_id=WP_001301325.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1128165 1129829 . + . ID=gene1100;Name=mhpA;gbkey=Gene;gene=mhpA;gene_biotype=protein_coding;locus_tag=SH04_RS05515;old_locus_tag=SH04_05510 NZ_CP010443.1 Protein Homology CDS 1128165 1129829 . + 0 ID=cds1056;Parent=gene1100;Dbxref=Genbank:WP_001007407.1;Name=WP_001007407.1;Note=catalyzes the formation of 3-(2%2C3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate;gbkey=CDS;gene=mhpA;product=3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;protein_id=WP_001007407.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1129831 1130775 . + . ID=gene1101;Name=mhpB;gbkey=Gene;gene=mhpB;gene_biotype=protein_coding;locus_tag=SH04_RS05520;old_locus_tag=SH04_05515 NZ_CP010443.1 Protein Homology CDS 1129831 1130775 . + 0 ID=cds1057;Parent=gene1101;Dbxref=Genbank:WP_000543457.1;Name=WP_000543457.1;Note=catalyzes the cleavage of 3-(2%2C3-dihydroxyphenyl) propionate into 2-hydroxy-6-oxonona-2%2C4-diene-1%2C9-dioate%3B part of the 3-phenylpropionic acid degradation pathway%3B member of the protocatechuate 4%2C5-dioxygenase family;gbkey=CDS;gene=mhpB;product=2%2C3-dihydroxyphenylpropionate/2%2C3-dihydroxicinnamic acid 1%2C2-dioxygenase;protein_id=WP_000543457.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1130793 1131659 . + . ID=gene1102;Name=SH04_RS05525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05525;old_locus_tag=SH04_05520 NZ_CP010443.1 Protein Homology CDS 1130793 1131659 . + 0 ID=cds1058;Parent=gene1102;Dbxref=Genbank:WP_000121907.1;Name=WP_000121907.1;gbkey=CDS;product=2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase;protein_id=WP_000121907.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1131669 1132478 . + . ID=gene1103;Name=SH04_RS05530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05530;old_locus_tag=SH04_05525 NZ_CP010443.1 Protein Homology CDS 1131669 1132478 . + 0 ID=cds1059;Parent=gene1103;Dbxref=Genbank:WP_000160710.1;Name=WP_000160710.1;gbkey=CDS;product=2-keto-4-pentenoate hydratase;protein_id=WP_000160710.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1132475 1133425 . + . ID=gene1104;Name=SH04_RS05535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05535;old_locus_tag=SH04_05530 NZ_CP010443.1 Protein Homology CDS 1132475 1133425 . + 0 ID=cds1060;Parent=gene1104;Dbxref=Genbank:WP_000044314.1;Name=WP_000044314.1;Note=catalyzes the formation of acetyl-CoA from acetalaldehyde;gbkey=CDS;product=acetaldehyde dehydrogenase;protein_id=WP_000044314.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1133422 1134435 . + . ID=gene1105;Name=SH04_RS05540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05540;old_locus_tag=SH04_05535 NZ_CP010443.1 Protein Homology CDS 1133422 1134435 . + 0 ID=cds1061;Parent=gene1105;Dbxref=Genbank:WP_001013499.1;Name=WP_001013499.1;Note=catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid%3B involved in the degradation of phenylpropionate;gbkey=CDS;product=4-hydroxy-2-oxovalerate aldolase;protein_id=WP_001013499.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1134476 1134897 . + . ID=id76;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1135013 1136224 . + . ID=gene1106;Name=SH04_RS05545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05545;old_locus_tag=SH04_05540 NZ_CP010443.1 Protein Homology CDS 1135013 1136224 . + 0 ID=cds1062;Parent=gene1106;Dbxref=Genbank:WP_000107627.1;Name=WP_000107627.1;gbkey=CDS;product=3-(3-hydroxy-phenyl)propionate transporter;protein_id=WP_000107627.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1136326 1136865 . + . ID=gene1107;Name=SH04_RS05550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05550;old_locus_tag=SH04_05545 NZ_CP010443.1 Protein Homology CDS 1136326 1136865 . + 0 ID=cds1063;Parent=gene1107;Dbxref=Genbank:WP_001096705.1;Name=WP_001096705.1;gbkey=CDS;product=DUF2058 domain-containing protein;protein_id=WP_001096705.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1137089 1137922 . - . ID=gene1108;Name=SH04_RS05555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05555;old_locus_tag=SH04_05550 NZ_CP010443.1 Protein Homology CDS 1137089 1137922 . - 0 ID=cds1064;Parent=gene1108;Dbxref=Genbank:WP_000419081.1;Name=WP_000419081.1;gbkey=CDS;product=S-formylglutathione hydrolase FrmB;protein_id=WP_000419081.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1138016 1139125 . - . ID=gene1109;Name=SH04_RS05560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05560;old_locus_tag=SH04_05555 NZ_CP010443.1 Protein Homology CDS 1138016 1139125 . - 0 ID=cds1065;Parent=gene1109;Dbxref=Genbank:WP_000842106.1;Name=WP_000842106.1;Note=catalyzes the formation of S-formylglutathione from S-(hydroxymethyl)glutathione%3B also catalyzes the formation of aldehyde or ketone from alcohols;gbkey=CDS;product=S-(hydroxymethyl)glutathione dehydrogenase;protein_id=WP_000842106.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1139160 1139435 . - . ID=gene1110;Name=SH04_RS05565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05565;old_locus_tag=SH04_05560 NZ_CP010443.1 Protein Homology CDS 1139160 1139435 . - 0 ID=cds1066;Parent=gene1110;Dbxref=Genbank:WP_001141271.1;Name=WP_001141271.1;Note=formaldehyde-induced negative regulator of the frmRAB operon;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001141271.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1139623 1140396 . - . ID=gene1111;Name=SH04_RS05570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05570;old_locus_tag=SH04_05565 NZ_CP010443.1 Protein Homology CDS 1139623 1140396 . - 0 ID=cds1067;Parent=gene1111;Dbxref=Genbank:WP_000596084.1;Name=WP_000596084.1;gbkey=CDS;product=outer membrane protein;protein_id=WP_000596084.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1140398 1140841 . - . ID=gene1112;Name=SH04_RS05575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05575;old_locus_tag=SH04_05570 NZ_CP010443.1 Protein Homology CDS 1140398 1140841 . - 0 ID=cds1068;Parent=gene1112;Dbxref=Genbank:WP_000012218.1;Name=WP_000012218.1;gbkey=CDS;product=transferase;protein_id=WP_000012218.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1140812 1142146 . + . ID=id77;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1140905 1141270 . + . ID=gene1113;Name=SH04_RS05580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05580;old_locus_tag=SH04_05575 NZ_CP010443.1 Protein Homology CDS 1140905 1141270 . + 0 ID=cds1069;Parent=gene1113;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1141228 1142133 . + . ID=gene1114;Name=SH04_RS05585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05585;old_locus_tag=SH04_05580 NZ_CP010443.1 Protein Homology CDS 1141228 1142133 . + 0 ID=cds1070;Parent=gene1114;Dbxref=Genbank:WP_000376502.1;Name=WP_000376502.1;gbkey=CDS;product=integrase;protein_id=WP_000376502.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1142293 1143489 . - . ID=gene1115;Name=SH04_RS05590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05590;old_locus_tag=SH04_05585 NZ_CP010443.1 Protein Homology CDS 1142293 1143489 . - 0 ID=cds1071;Parent=gene1115;Dbxref=Genbank:WP_000860444.1;Name=WP_000860444.1;gbkey=CDS;product=family 2 glycosyltransferase;protein_id=WP_000860444.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1143613 1144170 . - . ID=gene1116;Name=SH04_RS05595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05595;old_locus_tag=SH04_05590 NZ_CP010443.1 Protein Homology CDS 1143613 1144170 . - 0 ID=cds1072;Parent=gene1116;Dbxref=Genbank:WP_000362028.1;Name=WP_000362028.1;gbkey=CDS;product=PIG-L family deacetylase;protein_id=WP_000362028.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1144786 1145748 . + . ID=gene1117;Name=tauA;gbkey=Gene;gene=tauA;gene_biotype=protein_coding;locus_tag=SH04_RS05600;old_locus_tag=SH04_05595 NZ_CP010443.1 Protein Homology CDS 1144786 1145748 . + 0 ID=cds1073;Parent=gene1117;Dbxref=Genbank:WP_001018417.1;Name=WP_001018417.1;Note=with TauB and TauC is responsible for taurine uptake.;gbkey=CDS;gene=tauA;product=taurine-binding periplasmic protein;protein_id=WP_001018417.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1145761 1146528 . + . ID=gene1118;Name=tauB;gbkey=Gene;gene=tauB;gene_biotype=protein_coding;locus_tag=SH04_RS05605;old_locus_tag=SH04_05600 NZ_CP010443.1 Protein Homology CDS 1145761 1146528 . + 0 ID=cds1074;Parent=gene1118;Dbxref=Genbank:WP_000939375.1;Name=WP_000939375.1;Note=Part of the ABC transporter complex tauABC involved in taurine import;gbkey=CDS;gene=tauB;product=taurine import ATP-binding protein TauB;protein_id=WP_000939375.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1146525 1147352 . + . ID=gene1119;Name=SH04_RS05610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05610;old_locus_tag=SH04_05605 NZ_CP010443.1 Protein Homology CDS 1146525 1147352 . + 0 ID=cds1075;Parent=gene1119;Dbxref=Genbank:WP_000114620.1;Name=WP_000114620.1;gbkey=CDS;product=taurine ABC transporter permease;protein_id=WP_000114620.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1147349 1148200 . + . ID=gene1120;Name=tauD;gbkey=Gene;gene=tauD;gene_biotype=protein_coding;locus_tag=SH04_RS05615;old_locus_tag=SH04_05610 NZ_CP010443.1 Protein Homology CDS 1147349 1148200 . + 0 ID=cds1076;Parent=gene1120;Dbxref=Genbank:WP_000004027.1;Name=WP_000004027.1;Note=catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide%3B non-heme iron oxidase%3B allows the use of taurine as an alternative sulfur source%3B forms homodimers;gbkey=CDS;gene=tauD;product=alpha-ketoglutarate-dependent taurine dioxygenase;protein_id=WP_000004027.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1148307 1149281 . - . ID=gene1121;Name=SH04_RS05620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05620;old_locus_tag=SH04_05615 NZ_CP010443.1 Protein Homology CDS 1148307 1149281 . - 0 ID=cds1077;Parent=gene1121;Dbxref=Genbank:WP_001295337.1;Name=WP_001295337.1;gbkey=CDS;product=delta-aminolevulinic acid dehydratase;protein_id=WP_001295337.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1149451 1149702 . - . ID=gene1122;Name=SH04_RS05625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05625;old_locus_tag=SH04_05620 NZ_CP010443.1 Protein Homology CDS 1149451 1149702 . - 0 ID=cds1078;Parent=gene1122;Dbxref=Genbank:WP_000250375.1;Name=WP_000250375.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000250375.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1149805 1151331 . + . ID=gene1123;Name=SH04_RS05630;end_range=1151331,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS05630;partial=true;pseudo=true NZ_CP010443.1 Protein Homology CDS 1149805 1151331 . + 0 ID=cds1079;Parent=gene1123;end_range=1151331,.;gbkey=CDS;partial=true;product=pertactin;pseudo=true;transl_except=(pos:1151263..1151265%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1151262 1152526 . + . ID=id78;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1151293 1152159 . - . ID=gene1124;Name=SH04_RS05635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05635;old_locus_tag=SH04_05630 NZ_CP010443.1 Protein Homology CDS 1151293 1152159 . - 0 ID=cds1080;Parent=gene1124;Dbxref=Genbank:WP_000878218.1;Name=WP_000878218.1;gbkey=CDS;product=transposase;protein_id=WP_000878218.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1152156 1152455 . - . ID=gene1125;Name=SH04_RS05640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05640;old_locus_tag=SH04_05635 NZ_CP010443.1 Protein Homology CDS 1152156 1152455 . - 0 ID=cds1081;Parent=gene1125;Dbxref=Genbank:WP_000169527.1;Name=WP_000169527.1;gbkey=CDS;product=transposase;protein_id=WP_000169527.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1152530 1153972 . + . ID=gene1126;Name=SH04_RS05645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS05645;partial=true;pseudo=true;start_range=.,1152530 NZ_CP010443.1 Protein Homology CDS 1152530 1153972 . + 0 ID=cds1082;Parent=gene1126;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=pertactin;pseudo=true;start_range=.,1152530;transl_table=11 NZ_CP010443.1 RefSeq gene 1154060 1154683 . + . ID=gene1127;Name=SH04_RS05650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05650;old_locus_tag=SH04_05645 NZ_CP010443.1 Protein Homology CDS 1154060 1154683 . + 0 ID=cds1083;Parent=gene1127;Dbxref=Genbank:WP_001295335.1;Name=WP_001295335.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001295335.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1154684 1155841 . - . ID=gene1128;Name=SH04_RS05655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05655;old_locus_tag=SH04_05650 NZ_CP010443.1 Protein Homology CDS 1154684 1155841 . - 0 ID=cds1084;Parent=gene1128;Dbxref=Genbank:WP_000830741.1;Name=WP_000830741.1;Note=this protein has no known enzymatic function;gbkey=CDS;product=D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH;protein_id=WP_000830741.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1155979 1156173 . + . ID=gene1129;Name=SH04_RS05660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05660;old_locus_tag=SH04_05655 NZ_CP010443.1 Protein Homology CDS 1155979 1156173 . + 0 ID=cds1085;Parent=gene1129;Dbxref=Genbank:WP_001110751.1;Name=WP_001110751.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001110751.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1156193 1157413 . + . ID=gene1130;Name=SH04_RS05665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05665;old_locus_tag=SH04_05660 NZ_CP010443.1 Protein Homology CDS 1156193 1157413 . + 0 ID=cds1086;Parent=gene1130;Dbxref=Genbank:WP_001301663.1;Name=WP_001301663.1;Note=in Escherichia coli SbmA is involved in uptake of microcin J25%3B functions along with FhuA%2C TonB%2C and ExbB/D in this capacity%3B in Sinorhizobium meliloti%2C BacA is essential and required for symbiosis%3B defects appear to affect the cell envelope;gbkey=CDS;product=peptide antibiotic transporter SbmA;protein_id=WP_001301663.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1157426 1158520 . + . ID=gene1131;Name=SH04_RS05670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05670;old_locus_tag=SH04_05665 NZ_CP010443.1 Protein Homology CDS 1157426 1158520 . + 0 ID=cds1087;Parent=gene1131;Dbxref=Genbank:WP_000092067.1;Name=WP_000092067.1;gbkey=CDS;product=microcin transporter;protein_id=WP_000092067.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1158579 1158887 . - . ID=gene1132;Name=SH04_RS05675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05675;old_locus_tag=SH04_05670 NZ_CP010443.1 Protein Homology CDS 1158579 1158887 . - 0 ID=cds1088;Parent=gene1132;Dbxref=Genbank:WP_000763151.1;Name=WP_000763151.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000763151.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1159147 1159359 . + . ID=gene1133;Name=SH04_RS05680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05680;old_locus_tag=SH04_05675 NZ_CP010443.1 Protein Homology CDS 1159147 1159359 . + 0 ID=cds1089;Parent=gene1133;Dbxref=Genbank:WP_001295334.1;Name=WP_001295334.1;gbkey=CDS;product=DUF2754 domain-containing protein;protein_id=WP_001295334.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1159383 1160477 . - . ID=gene1134;Name=SH04_RS05685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05685;old_locus_tag=SH04_05680 NZ_CP010443.1 Protein Homology CDS 1159383 1160477 . - 0 ID=cds1090;Parent=gene1134;Dbxref=Genbank:WP_000413677.1;Name=WP_000413677.1;gbkey=CDS;product=D-alanine--D-alanine ligase A;protein_id=WP_000413677.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1160558 1160758 . + . ID=gene1135;Name=SH04_RS05690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05690;old_locus_tag=SH04_05685 NZ_CP010443.1 Protein Homology CDS 1160558 1160758 . + 0 ID=cds1091;Parent=gene1135;Dbxref=Genbank:WP_001299112.1;Name=WP_001299112.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001299112.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1160940 1161200 . + . ID=gene1136;Name=SH04_RS05695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05695;old_locus_tag=SH04_05690 NZ_CP010443.1 Protein Homology CDS 1160940 1161200 . + 0 ID=cds1092;Parent=gene1136;Dbxref=Genbank:WP_000792970.1;Name=WP_000792970.1;Note=RpoS stabilzer during Pi starvation%3B anti-adapter protein;gbkey=CDS;product=anti-adapter protein IraP;protein_id=WP_000792970.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1161301 1162716 . + . ID=gene1137;Name=SH04_RS05700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05700;old_locus_tag=SH04_05695 NZ_CP010443.1 Protein Homology CDS 1161301 1162716 . + 0 ID=cds1093;Parent=gene1137;Dbxref=Genbank:WP_000814403.1;Name=WP_000814403.1;gbkey=CDS;product=alkaline phosphatase;protein_id=WP_000814403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1162835 1163155 . + . ID=gene1138;Name=SH04_RS05705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05705;old_locus_tag=SH04_05700 NZ_CP010443.1 Protein Homology CDS 1162835 1163155 . + 0 ID=cds1094;Parent=gene1138;Dbxref=Genbank:WP_001295332.1;Name=WP_001295332.1;gbkey=CDS;product=phosphate starvation-inducible protein PsiF;protein_id=WP_001295332.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1163257 1164372 . + . ID=gene1139;Name=adrA;gbkey=Gene;gene=adrA;gene_biotype=protein_coding;gene_synonym=yaiC;locus_tag=SH04_RS05710;old_locus_tag=SH04_05705 NZ_CP010443.1 Protein Homology CDS 1163257 1164372 . + 0 ID=cds1095;Parent=gene1139;Dbxref=Genbank:WP_000484048.1;Name=WP_000484048.1;Note=catalyzes the conversion of 2 GTP into c-di-GMP%3B adrA overexpression induces cellulose biosynthesis%2C cell adherence to abiotic surfaces and swimming and swarming motility%3B AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis;gbkey=CDS;gene=adrA;product=diguanylate cyclase;protein_id=WP_000484048.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1164389 1165198 . - . ID=gene1140;Name=SH04_RS05715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05715;old_locus_tag=SH04_05710 NZ_CP010443.1 Protein Homology CDS 1164389 1165198 . - 0 ID=cds1096;Parent=gene1140;Dbxref=Genbank:WP_001295331.1;Name=WP_001295331.1;Note=catalyzes the formation of L-proline from pyrroline-5-carboxylate;gbkey=CDS;product=pyrroline-5-carboxylate reductase;protein_id=WP_001295331.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1165318 1165776 . + . ID=gene1141;Name=SH04_RS05720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05720;old_locus_tag=SH04_05715 NZ_CP010443.1 Protein Homology CDS 1165318 1165776 . + 0 ID=cds1097;Parent=gene1141;Dbxref=Genbank:WP_000158159.1;Name=WP_000158159.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000158159.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1165959 1166483 . + . ID=gene1142;Name=aroL;gbkey=Gene;gene=aroL;gene_biotype=protein_coding;locus_tag=SH04_RS05725;old_locus_tag=SH04_05720 NZ_CP010443.1 Protein Homology CDS 1165959 1166483 . + 0 ID=cds1098;Parent=gene1142;Dbxref=Genbank:WP_000193393.1;Name=WP_000193393.1;Note=type II enzyme similar to type I but differentially regulated and with a lower Km%3B catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis;gbkey=CDS;gene=aroL;product=shikimate kinase;protein_id=WP_000193393.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1166533 1166724 . + . ID=gene1143;Name=SH04_RS05730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05730;old_locus_tag=SH04_05725 NZ_CP010443.1 Protein Homology CDS 1166533 1166724 . + 0 ID=cds1099;Parent=gene1143;Dbxref=Genbank:WP_001142439.1;Name=WP_001142439.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001142439.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1166755 1166952 . + . ID=gene1144;Name=SH04_RS05735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05735;old_locus_tag=SH04_05730 NZ_CP010443.1 Protein Homology CDS 1166755 1166952 . + 0 ID=cds1100;Parent=gene1144;Dbxref=Genbank:WP_001333307.1;Name=WP_001333307.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001333307.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1166982 1167659 . + . ID=gene1145;Name=SH04_RS05740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05740;old_locus_tag=SH04_05735 NZ_CP010443.1 Protein Homology CDS 1166982 1167659 . + 0 ID=cds1101;Parent=gene1145;Dbxref=Genbank:WP_001276420.1;Name=WP_001276420.1;gbkey=CDS;product=protein AroM;protein_id=WP_001276420.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1167731 1168015 . + . ID=gene1146;Name=SH04_RS05745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05745;old_locus_tag=SH04_05740 NZ_CP010443.1 Protein Homology CDS 1167731 1168015 . + 0 ID=cds1102;Parent=gene1146;Dbxref=Genbank:WP_000941942.1;Name=WP_000941942.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000941942.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1168223 1168504 . + . ID=gene1147;Name=SH04_RS05750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05750;old_locus_tag=SH04_05745 NZ_CP010443.1 Protein Homology CDS 1168223 1168504 . + 0 ID=cds1103;Parent=gene1147;Dbxref=Genbank:WP_000941997.1;Name=WP_000941997.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000941997.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1168662 1169573 . - . ID=gene1148;Name=SH04_RS05755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05755;old_locus_tag=SH04_05750 NZ_CP010443.1 Protein Homology CDS 1168662 1169573 . - 0 ID=cds1104;Parent=gene1148;Dbxref=Genbank:WP_001298537.1;Name=WP_001298537.1;Note=Required for efficient pilin antigenic variation;gbkey=CDS;product=recombination-associated protein RdgC;protein_id=WP_001298537.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1169698 1170606 . + . ID=gene1149;Name=SH04_RS05760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05760;old_locus_tag=SH04_05755 NZ_CP010443.1 Protein Homology CDS 1169698 1170606 . + 0 ID=cds1105;Parent=gene1149;Dbxref=Genbank:WP_001219309.1;Name=WP_001219309.1;Note=catalyzes phosphorylation of fructose%3B cytosolic enzyme;gbkey=CDS;product=fructokinase;protein_id=WP_001219309.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1170851 1172035 . - . ID=gene1150;Name=SH04_RS05765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05765;old_locus_tag=SH04_05760 NZ_CP010443.1 Protein Homology CDS 1170851 1172035 . - 0 ID=cds1106;Parent=gene1150;Dbxref=Genbank:WP_001326926.1;Name=WP_001326926.1;Note=member of the major facilitator superfamily (MFS) of transporters%3B unknown function%3B may be associated with transport or processing of arabinose polymers;gbkey=CDS;product=protein AraJ;protein_id=WP_001326926.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1172161 1175307 . - . ID=gene1151;Name=SH04_RS05770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05770;old_locus_tag=SH04_05765 NZ_CP010443.1 Protein Homology CDS 1172161 1175307 . - 0 ID=cds1107;Parent=gene1151;Dbxref=Genbank:WP_000698951.1;Name=WP_000698951.1;Note=with SbcD cleaves DNA hairpin structures%3B also has 5' single-strand endonuclease activity;gbkey=CDS;product=nuclease SbcCD subunit C;protein_id=WP_000698951.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1175304 1176506 . - . ID=gene1152;Name=SH04_RS05775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05775;old_locus_tag=SH04_05770 NZ_CP010443.1 Protein Homology CDS 1175304 1176506 . - 0 ID=cds1108;Parent=gene1152;Dbxref=Genbank:WP_001221319.1;Name=WP_001221319.1;Note=with SbcC cleaves DNA hairpin structure%2C also has 5' single-strand endonuclease activity;gbkey=CDS;product=nuclease SbcCD subunit D;protein_id=WP_001221319.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1176696 1177385 . + . ID=gene1153;Name=SH04_RS05780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05780;old_locus_tag=SH04_05775 NZ_CP010443.1 Protein Homology CDS 1176696 1177385 . + 0 ID=cds1109;Parent=gene1153;Dbxref=Genbank:WP_000113933.1;Name=WP_000113933.1;Note=two component response regulator for the phosphate regulon%3B PhoR phosphorylates PhoB;gbkey=CDS;product=two-component system response regulator;protein_id=WP_000113933.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1177443 1178738 . + . ID=gene1154;Name=phoR;gbkey=Gene;gene=phoR;gene_biotype=protein_coding;locus_tag=SH04_RS05785;old_locus_tag=SH04_05780 NZ_CP010443.1 Protein Homology CDS 1177443 1178738 . + 0 ID=cds1110;Parent=gene1154;Dbxref=Genbank:WP_000893623.1;Name=WP_000893623.1;Note=membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB;gbkey=CDS;gene=phoR;product=phosphate regulon sensor protein PhoR;protein_id=WP_000893623.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1179145 1180464 . + . ID=gene1155;Name=SH04_RS05790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05790;old_locus_tag=SH04_05785 NZ_CP010443.1 Protein Homology CDS 1179145 1180464 . + 0 ID=cds1111;Parent=gene1155;Dbxref=Genbank:WP_000149639.1;Name=WP_000149639.1;Note=sodium:branched-chain amino acid symporter;gbkey=CDS;product=branched-chain amino acid transport system 2 carrier protein;protein_id=WP_000149639.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1180540 1181913 . + . ID=gene1156;Name=proY;gbkey=Gene;gene=proY;gene_biotype=protein_coding;locus_tag=SH04_RS05795;old_locus_tag=SH04_05790 NZ_CP010443.1 Protein Homology CDS 1180540 1181913 . + 0 ID=cds1112;Parent=gene1156;Dbxref=Genbank:WP_001295329.1;Name=WP_001295329.1;Note=cryptic permease that may be involved in the transport of proline across the inner membrane%3B in Salmonella typhimurium%2C the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation;gbkey=CDS;gene=proY;product=proline-specific permease ProY;protein_id=WP_001295329.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1182069 1183886 . + . ID=gene1157;Name=SH04_RS05800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05800;old_locus_tag=SH04_05795 NZ_CP010443.1 Protein Homology CDS 1182069 1183886 . + 0 ID=cds1113;Parent=gene1157;Dbxref=Genbank:WP_001310597.1;Name=WP_001310597.1;gbkey=CDS;product=maltodextrin glucosidase;protein_id=WP_001310597.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1183891 1184472 . - . ID=gene1158;Name=SH04_RS05805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05805;old_locus_tag=SH04_05800 NZ_CP010443.1 Protein Homology CDS 1183891 1184472 . - 0 ID=cds1114;Parent=gene1158;Dbxref=Genbank:WP_001009885.1;Name=WP_001009885.1;Note=Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP;gbkey=CDS;product=ACP phosphodiesterase;protein_id=WP_001009885.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1184565 1185635 . + . ID=gene1159;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=SH04_RS05810;old_locus_tag=SH04_05805 NZ_CP010443.1 Protein Homology CDS 1184565 1185635 . + 0 ID=cds1115;Parent=gene1159;Dbxref=Genbank:WP_001266503.1;Name=WP_001266503.1;Note=Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step;gbkey=CDS;gene=queA;product=S-adenosylmethionine:tRNA ribosyltransferase-isomerase;protein_id=WP_001266503.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1185691 1186818 . + . ID=gene1160;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=SH04_RS05815;old_locus_tag=SH04_05810 NZ_CP010443.1 Protein Homology CDS 1185691 1186818 . + 0 ID=cds1116;Parent=gene1160;Dbxref=Genbank:WP_000667319.1;Name=WP_000667319.1;Note=Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp%2C -Asn%2C -His and -Tyr);gbkey=CDS;gene=tgt;product=queuine tRNA-ribosyltransferase;protein_id=WP_000667319.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1186841 1187173 . + . ID=gene1161;Name=yajC;gbkey=Gene;gene=yajC;gene_biotype=protein_coding;locus_tag=SH04_RS05820;old_locus_tag=SH04_05815 NZ_CP010443.1 Protein Homology CDS 1186841 1187173 . + 0 ID=cds1117;Parent=gene1161;Dbxref=Genbank:WP_000007629.1;Name=WP_000007629.1;Note=member of preprotein translocase%3B forms a heterotrimer with SecD and SecF%3B links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex;gbkey=CDS;gene=yajC;product=preprotein translocase subunit YajC;protein_id=WP_000007629.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1187201 1189048 . + . ID=gene1162;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;locus_tag=SH04_RS05825;old_locus_tag=SH04_05820 NZ_CP010443.1 Protein Homology CDS 1187201 1189048 . + 0 ID=cds1118;Parent=gene1162;Dbxref=Genbank:WP_000934822.1;Name=WP_000934822.1;Note=part of the preprotein secretory system%3B when complexed with proteins SecF and YajC%2C SecDFyajC stimulates the proton motive force-driven protein translocation%2C and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane;gbkey=CDS;gene=secD;product=preprotein translocase subunit SecD;protein_id=WP_000934822.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1189059 1190030 . + . ID=gene1163;Name=SH04_RS05830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05830;old_locus_tag=SH04_05825 NZ_CP010443.1 Protein Homology CDS 1189059 1190030 . + 0 ID=cds1119;Parent=gene1163;Dbxref=Genbank:WP_000046637.1;Name=WP_000046637.1;gbkey=CDS;product=protein translocase subunit SecF;protein_id=WP_000046637.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1190159 1190506 . + . ID=gene1164;Name=SH04_RS05835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05835;old_locus_tag=SH04_05830 NZ_CP010443.1 Protein Homology CDS 1190159 1190506 . + 0 ID=cds1120;Parent=gene1164;Dbxref=Genbank:WP_000974813.1;Name=WP_000974813.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000974813.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1190520 1190642 . + . ID=gene1165;Name=SH04_RS05840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05840;old_locus_tag=SH04_05835 NZ_CP010443.1 Protein Homology CDS 1190520 1190642 . + 0 ID=cds1121;Parent=gene1165;Dbxref=Genbank:WP_001326928.1;Name=WP_001326928.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001326928.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1190683 1191567 . - . ID=gene1166;Name=SH04_RS05845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05845;old_locus_tag=SH04_05840 NZ_CP010443.1 Protein Homology CDS 1190683 1191567 . - 0 ID=cds1122;Parent=gene1166;Dbxref=Genbank:WP_001295328.1;Name=WP_001295328.1;Note=receptor of phage T6 and colicin K%3B involved in the transfer of deoxyribo- and ribo-nucleotides across the outer membrane;gbkey=CDS;product=nucleoside-specific channel-forming protein tsx;protein_id=WP_001295328.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1191866 1192405 . - . ID=gene1167;Name=SH04_RS05850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05850;old_locus_tag=SH04_05845 NZ_CP010443.1 Protein Homology CDS 1191866 1192405 . - 0 ID=cds1123;Parent=gene1167;Dbxref=Genbank:WP_001326929.1;Name=WP_001326929.1;gbkey=CDS;product=lipoprotein;protein_id=WP_001326929.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1192556 1193005 . + . ID=gene1168;Name=SH04_RS05855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05855;old_locus_tag=SH04_05850 NZ_CP010443.1 Protein Homology CDS 1192556 1193005 . + 0 ID=cds1124;Parent=gene1168;Dbxref=Genbank:WP_000543535.1;Name=WP_000543535.1;gbkey=CDS;product=NrdR family transcriptional regulator;protein_id=WP_000543535.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1193009 1194112 . + . ID=gene1169;Name=ribD;gbkey=Gene;gene=ribD;gene_biotype=protein_coding;locus_tag=SH04_RS05860;old_locus_tag=SH04_05855 NZ_CP010443.1 Protein Homology CDS 1193009 1194112 . + 0 ID=cds1125;Parent=gene1169;Dbxref=Genbank:WP_001150457.1;Name=WP_001150457.1;Note=riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway%3B catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil;gbkey=CDS;gene=ribD;product=riboflavin biosynthesis protein RibD;protein_id=WP_001150457.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1194201 1194671 . + . ID=gene1170;Name=ribH;gbkey=Gene;gene=ribH;gene_biotype=protein_coding;locus_tag=SH04_RS05865;old_locus_tag=SH04_05860 NZ_CP010443.1 Protein Homology CDS 1194201 1194671 . + 0 ID=cds1126;Parent=gene1170;Dbxref=Genbank:WP_001021161.1;Name=WP_001021161.1;Note=RibE%3B 6%2C7-diimethyl-8-ribityllumazine synthase%3B DMRL synthase%3B lumazine synthase%3B beta subunit of riboflavin synthase%3B condenses 5-amino-6-(1'-D)-ribityl-amino-2%2C4(1H%2C3H)-pyrimidinedione with L-3%2C4-dihydrohy-2-butanone-4-phosphate to generate 6%2C6-dimethyl-8-lumazine (DMRL)%3B riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12)%3B involved in the last steps of riboflavin biosynthesis%3B forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli%3B in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not;gbkey=CDS;gene=ribH;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=WP_001021161.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1194691 1195110 . + . ID=gene1171;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;locus_tag=SH04_RS05870;old_locus_tag=SH04_05865 NZ_CP010443.1 Protein Homology CDS 1194691 1195110 . + 0 ID=cds1127;Parent=gene1171;Dbxref=Genbank:WP_000801125.1;Name=WP_000801125.1;Note=Regulates rRNA biosynthesis by transcriptional antitermination;gbkey=CDS;gene=nusB;product=transcription antitermination protein NusB;protein_id=WP_000801125.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1195188 1196165 . + . ID=gene1172;Name=SH04_RS05875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05875;old_locus_tag=SH04_05870 NZ_CP010443.1 Protein Homology CDS 1195188 1196165 . + 0 ID=cds1128;Parent=gene1172;Dbxref=Genbank:WP_000742109.1;Name=WP_000742109.1;Note=catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP;gbkey=CDS;product=thiamine-monophosphate kinase;protein_id=WP_000742109.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1196143 1196661 . + . ID=gene1173;Name=SH04_RS05880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05880;old_locus_tag=SH04_05875 NZ_CP010443.1 Protein Homology CDS 1196143 1196661 . + 0 ID=cds1129;Parent=gene1173;Dbxref=Genbank:WP_000154044.1;Name=WP_000154044.1;Note=hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate;gbkey=CDS;product=phosphatidylglycerophosphatase A;protein_id=WP_000154044.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1196715 1197689 . - . ID=gene1174;Name=SH04_RS05885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05885;old_locus_tag=SH04_05880 NZ_CP010443.1 Protein Homology CDS 1196715 1197689 . - 0 ID=cds1130;Parent=gene1174;Dbxref=Genbank:WP_001199800.1;Name=WP_001199800.1;gbkey=CDS;product=2-carboxybenzaldehyde reductase;protein_id=WP_001199800.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1197704 1197827 . + . ID=id79;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1197869 1199731 . - . ID=gene1175;Name=SH04_RS05890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05890;old_locus_tag=SH04_05885 NZ_CP010443.1 Protein Homology CDS 1197869 1199731 . - 0 ID=cds1131;Parent=gene1175;Dbxref=Genbank:WP_000006797.1;Name=WP_000006797.1;Note=catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate;gbkey=CDS;product=1-deoxy-D-xylulose-5-phosphate synthase;protein_id=WP_000006797.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1199756 1200655 . - . ID=gene1176;Name=SH04_RS05895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05895;old_locus_tag=SH04_05890 NZ_CP010443.1 Protein Homology CDS 1199756 1200655 . - 0 ID=cds1132;Parent=gene1176;Dbxref=Genbank:WP_000347217.1;Name=WP_000347217.1;gbkey=CDS;product=farnesyl-diphosphate synthase;protein_id=WP_000347217.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1200655 1200897 . - . ID=gene1177;Name=SH04_RS05900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05900;old_locus_tag=SH04_05895 NZ_CP010443.1 Protein Homology CDS 1200655 1200897 . - 0 ID=cds1133;Parent=gene1177;Dbxref=Genbank:WP_001124935.1;Name=WP_001124935.1;Note=catalyzes the bidirectional exonucleolytic cleavage of DNA;gbkey=CDS;product=exodeoxyribonuclease 7 small subunit;protein_id=WP_001124935.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1201103 1202551 . + . ID=gene1178;Name=SH04_RS05905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05905;old_locus_tag=SH04_05900 NZ_CP010443.1 Protein Homology CDS 1201103 1202551 . + 0 ID=cds1134;Parent=gene1178;Dbxref=Genbank:WP_000668662.1;Name=WP_000668662.1;Note=catalyzes the conversion of uridine to 4-thiouridinine tRNA%3B also required for the synthesis of the thiazole moiety;gbkey=CDS;product=tRNA sulfurtransferase;protein_id=WP_000668662.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1202605 1203195 . - . ID=gene1179;Name=SH04_RS05910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05910;old_locus_tag=SH04_05905 NZ_CP010443.1 Protein Homology CDS 1202605 1203195 . - 0 ID=cds1135;Parent=gene1179;Dbxref=Genbank:WP_001276305.1;Name=WP_001276305.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001276305.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1203158 1204069 . - . ID=gene1180;Name=SH04_RS05915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05915;old_locus_tag=SH04_05910 NZ_CP010443.1 Protein Homology CDS 1203158 1204069 . - 0 ID=cds1136;Parent=gene1180;Dbxref=Genbank:WP_000705865.1;Name=WP_000705865.1;Note=ketopantoate reductase%3B catalyzes the NADPH reduction of ketopantoate to pantoate%3B functions in pantothenate (vitamin B5) biosynthesis;gbkey=CDS;product=2-dehydropantoate 2-reductase;protein_id=WP_000705865.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1204237 1204728 . + . ID=gene1181;Name=SH04_RS05920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05920;old_locus_tag=SH04_05915 NZ_CP010443.1 Protein Homology CDS 1204237 1204728 . + 0 ID=cds1137;Parent=gene1181;Dbxref=Genbank:WP_001138904.1;Name=WP_001138904.1;Note=nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ%3B the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription;gbkey=CDS;product=nucleotide-binding protein;protein_id=WP_001138904.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1204856 1206220 . - . ID=gene1182;Name=SH04_RS05925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05925;old_locus_tag=SH04_05920 NZ_CP010443.1 Protein Homology CDS 1204856 1206220 . - 0 ID=cds1138;Parent=gene1182;Dbxref=Genbank:WP_001000963.1;Name=WP_001000963.1;gbkey=CDS;product=transporter;protein_id=WP_001000963.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1206369 1207259 . - . ID=gene1183;Name=SH04_RS05930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05930;old_locus_tag=SH04_05925 NZ_CP010443.1 Protein Homology CDS 1206369 1207259 . - 0 ID=cds1139;Parent=gene1183;Dbxref=Genbank:WP_000971336.1;Name=WP_000971336.1;Note=converts protoheme IX and farnesyl diphosphate to heme O;gbkey=CDS;product=protoheme IX farnesyltransferase;protein_id=WP_000971336.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1207271 1207600 . - . ID=gene1184;Name=SH04_RS05935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05935;old_locus_tag=SH04_05930 NZ_CP010443.1 Protein Homology CDS 1207271 1207600 . - 0 ID=cds1140;Parent=gene1184;Dbxref=Genbank:WP_000019869.1;Name=WP_000019869.1;gbkey=CDS;product=cytochrome bo(3) ubiquinol oxidase subunit 4;protein_id=WP_000019869.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1207600 1208214 . - . ID=gene1185;Name=SH04_RS05940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05940;old_locus_tag=SH04_05935 NZ_CP010443.1 Protein Homology CDS 1207600 1208214 . - 0 ID=cds1141;Parent=gene1185;Dbxref=Genbank:WP_000179819.1;Name=WP_000179819.1;gbkey=CDS;product=cytochrome bo(3) ubiquinol oxidase subunit 3;protein_id=WP_000179819.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1208204 1210195 . - . ID=gene1186;Name=SH04_RS05945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05945;old_locus_tag=SH04_05940 NZ_CP010443.1 Protein Homology CDS 1208204 1210195 . - 0 ID=cds1142;Parent=gene1186;Dbxref=Genbank:WP_000467180.1;Name=WP_000467180.1;gbkey=CDS;product=cytochrome bo(3) ubiquinol oxidase subunit 1;protein_id=WP_000467180.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1210217 1211164 . - . ID=gene1187;Name=SH04_RS05950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05950;old_locus_tag=SH04_05945 NZ_CP010443.1 Protein Homology CDS 1210217 1211164 . - 0 ID=cds1143;Parent=gene1187;Dbxref=Genbank:WP_001239436.1;Name=WP_001239436.1;gbkey=CDS;product=cytochrome bo(3) ubiquinol oxidase subunit 2;protein_id=WP_001239436.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1211624 1213099 . - . ID=gene1188;Name=ampG;gbkey=Gene;gene=ampG;gene_biotype=protein_coding;locus_tag=SH04_RS05955;old_locus_tag=SH04_05950 NZ_CP010443.1 Protein Homology CDS 1211624 1213099 . - 0 ID=cds1144;Parent=gene1188;Dbxref=Genbank:WP_000098429.1;Name=WP_000098429.1;Note=in Escherichia coli this protein is a permease involved in peptidoglycan recycling%3B member of major facilitator superfamily%3B MFS%3B inner membrane protein;gbkey=CDS;gene=ampG;product=muropeptide MFS transporter AmpG;protein_id=WP_000098429.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1213143 1213721 . - . ID=gene1189;Name=SH04_RS05960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05960;old_locus_tag=SH04_05955 NZ_CP010443.1 Protein Homology CDS 1213143 1213721 . - 0 ID=cds1145;Parent=gene1189;Dbxref=Genbank:WP_001295326.1;Name=WP_001295326.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295326.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1214026 1214343 . + . ID=gene1190;Name=SH04_RS05965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05965;old_locus_tag=SH04_05960 NZ_CP010443.1 Protein Homology CDS 1214026 1214343 . + 0 ID=cds1146;Parent=gene1190;Dbxref=Genbank:WP_000973448.1;Name=WP_000973448.1;Note=positive transcriptional regulator of morphogenetic pathway%3B controlling several genes involved in oxidative stress%2C acid stress%2C heat shock%2C osmotic shock%2C and carbon-starvation stress;gbkey=CDS;product=protein BolA;protein_id=WP_000973448.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1214352 1214540 . + . ID=gene1191;Name=SH04_RS05970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05970;old_locus_tag=SH04_05965 NZ_CP010443.1 Protein Homology CDS 1214352 1214540 . + 0 ID=cds1147;Parent=gene1191;Dbxref=Genbank:WP_001177122.1;Name=WP_001177122.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001177122.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1214687 1215985 . + . ID=gene1192;Name=SH04_RS05975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05975;old_locus_tag=SH04_05970 NZ_CP010443.1 Protein Homology CDS 1214687 1215985 . + 0 ID=cds1148;Parent=gene1192;Dbxref=Genbank:WP_001198386.1;Name=WP_001198386.1;gbkey=CDS;product=trigger factor;protein_id=WP_001198386.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1216231 1216854 . + . ID=gene1193;Name=SH04_RS05980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05980;old_locus_tag=SH04_05975 NZ_CP010443.1 Protein Homology CDS 1216231 1216854 . + 0 ID=cds1149;Parent=gene1193;Dbxref=Genbank:WP_000122253.1;Name=WP_000122253.1;gbkey=CDS;product=ATP-dependent Clp protease proteolytic subunit;protein_id=WP_000122253.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1216980 1218254 . + . ID=gene1194;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;locus_tag=SH04_RS05985;old_locus_tag=SH04_05980 NZ_CP010443.1 Protein Homology CDS 1216980 1218254 . + 0 ID=cds1150;Parent=gene1194;Dbxref=Genbank:WP_000130305.1;Name=WP_000130305.1;Note=binds and unfolds substrates as part of the ClpXP protease;gbkey=CDS;gene=clpX;product=ATP-dependent Clp protease ATP-binding subunit ClpX;protein_id=WP_000130305.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1218442 1220796 . + . ID=gene1195;Name=SH04_RS05990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05990;old_locus_tag=SH04_05985 NZ_CP010443.1 Protein Homology CDS 1218442 1220796 . + 0 ID=cds1151;Parent=gene1195;Dbxref=Genbank:WP_001295325.1;Name=WP_001295325.1;gbkey=CDS;product=lon protease;protein_id=WP_001295325.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1221005 1221277 . + . ID=gene1196;Name=SH04_RS05995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS05995;old_locus_tag=SH04_05990 NZ_CP010443.1 Protein Homology CDS 1221005 1221277 . + 0 ID=cds1152;Parent=gene1196;Dbxref=Genbank:WP_001043542.1;Name=WP_001043542.1;Note=histone-like DNA-binding protein;gbkey=CDS;product=DNA-binding protein HU-beta;protein_id=WP_001043542.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1221469 1223340 . + . ID=gene1197;Name=SH04_RS06000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06000;old_locus_tag=SH04_05995 NZ_CP010443.1 Protein Homology CDS 1221469 1223340 . + 0 ID=cds1153;Parent=gene1197;Dbxref=Genbank:WP_000969372.1;Name=WP_000969372.1;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_000969372.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1223491 1223862 . + . ID=gene1198;Name=SH04_RS06005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06005;old_locus_tag=SH04_06000 NZ_CP010443.1 Protein Homology CDS 1223491 1223862 . + 0 ID=cds1154;Parent=gene1198;Dbxref=Genbank:WP_000680312.1;Name=WP_000680312.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000680312.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1223956 1224354 . + . ID=gene1199;Name=SH04_RS06010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06010;old_locus_tag=SH04_06005 NZ_CP010443.1 Protein Homology CDS 1223956 1224354 . + 0 ID=cds1155;Parent=gene1199;Dbxref=Genbank:WP_001194534.1;Name=WP_001194534.1;gbkey=CDS;product=long-chain acyl-CoA thioesterase FadM;protein_id=WP_001194534.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1224406 1225101 . - . ID=gene1200;Name=SH04_RS06015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06015;old_locus_tag=SH04_06010 NZ_CP010443.1 Protein Homology CDS 1224406 1225101 . - 0 ID=cds1156;Parent=gene1200;Dbxref=Genbank:WP_000817220.1;Name=WP_000817220.1;Note=YbaX%3B catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0)%2C as one of the early reactions of quenosine biosynthesis%3B quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn%2C Asp%2C Tyr%2C and His;gbkey=CDS;product=7-cyano-7-deazaguanine synthase;protein_id=WP_000817220.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1225166 1226866 . - . ID=gene1201;Name=SH04_RS06020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06020;old_locus_tag=SH04_06015 NZ_CP010443.1 Protein Homology CDS 1225166 1226866 . - 0 ID=cds1157;Parent=gene1201;Dbxref=Genbank:WP_001238234.1;Name=WP_001238234.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_001238234.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1226966 1227784 . + . ID=gene1202;Name=SH04_RS06025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06025;old_locus_tag=SH04_06020 NZ_CP010443.1 Protein Homology CDS 1226966 1227784 . + 0 ID=cds1158;Parent=gene1202;Dbxref=Genbank:WP_001336137.1;Name=WP_001336137.1;Note=HMP-PP phosphatase%3B catalyzes the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate (HMP-PP) to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate (HMP-P);gbkey=CDS;product=HMP-PP phosphatase;protein_id=WP_001336137.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1227937 1228395 . + . ID=gene1203;Name=SH04_RS06030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06030;old_locus_tag=SH04_06025 NZ_CP010443.1 Protein Homology CDS 1227937 1228395 . + 0 ID=cds1159;Parent=gene1203;Dbxref=Genbank:WP_000884589.1;Name=WP_000884589.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000884589.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1228425 1230197 . + . ID=gene1204;Name=SH04_RS06035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06035;old_locus_tag=SH04_06030 NZ_CP010443.1 Protein Homology CDS 1228425 1230197 . + 0 ID=cds1160;Parent=gene1204;Dbxref=Genbank:WP_001235649.1;Name=WP_001235649.1;gbkey=CDS;product=multidrug resistance-like ATP-binding protein MdlA;protein_id=WP_001235649.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1230190 1231971 . + . ID=gene1205;Name=SH04_RS06040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06040;old_locus_tag=SH04_06035 NZ_CP010443.1 Protein Homology CDS 1230190 1231971 . + 0 ID=cds1161;Parent=gene1205;Dbxref=Genbank:WP_001256201.1;Name=WP_001256201.1;gbkey=CDS;product=multidrug resistance-like ATP-binding protein MdlB;protein_id=WP_001256201.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1232152 1232490 . + . ID=gene1206;Name=SH04_RS06045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06045;old_locus_tag=SH04_06040 NZ_CP010443.1 Protein Homology CDS 1232152 1232490 . + 0 ID=cds1162;Parent=gene1206;Dbxref=Genbank:WP_000780338.1;Name=WP_000780338.1;Note=indirectly regulates nitrogen metabolism%3B at high nitrogen levels P-II prevents the phosphorylation of NR-I%2C the transcriptional activator of the glutamine synthetase gene (glnA)%3B at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA;gbkey=CDS;product=nitrogen regulatory protein P-II 2;protein_id=WP_000780338.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1232520 1233806 . + . ID=gene1207;Name=SH04_RS06050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06050;old_locus_tag=SH04_06045 NZ_CP010443.1 Protein Homology CDS 1232520 1233806 . + 0 ID=cds1163;Parent=gene1207;Dbxref=Genbank:WP_000685029.1;Name=WP_000685029.1;gbkey=CDS;product=ammonia channel;protein_id=WP_000685029.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1233855 1234715 . - . ID=gene1208;Name=SH04_RS06055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06055;old_locus_tag=SH04_06050 NZ_CP010443.1 Protein Homology CDS 1233855 1234715 . - 0 ID=cds1164;Parent=gene1208;Dbxref=Genbank:WP_000075876.1;Name=WP_000075876.1;gbkey=CDS;product=acyl-CoA thioesterase 2;protein_id=WP_000075876.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1234933 1235505 . + . ID=gene1209;Name=SH04_RS06060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06060;old_locus_tag=SH04_06055 NZ_CP010443.1 Protein Homology CDS 1234933 1235505 . + 0 ID=cds1165;Parent=gene1209;Dbxref=Genbank:WP_000779842.1;Name=WP_000779842.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000779842.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1235536 1235847 . - . ID=gene1210;Name=SH04_RS06065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06065;old_locus_tag=SH04_06060 NZ_CP010443.1 Protein Homology CDS 1235536 1235847 . - 0 ID=cds1166;Parent=gene1210;Dbxref=Genbank:WP_000409911.1;Name=WP_000409911.1;gbkey=CDS;product=methylated-DNA--protein-cysteine methyltransferase;protein_id=WP_000409911.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1236226 1236579 . + . ID=gene1211;Name=SH04_RS06070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06070;old_locus_tag=SH04_06065 NZ_CP010443.1 Protein Homology CDS 1236226 1236579 . + 0 ID=cds1167;Parent=gene1211;Dbxref=Genbank:WP_000878140.1;Name=WP_000878140.1;gbkey=CDS;product=DUF1428 domain-containing protein;protein_id=WP_000878140.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1236621 1238171 . - . ID=gene1212;Name=SH04_RS06075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06075;old_locus_tag=SH04_06070 NZ_CP010443.1 Protein Homology CDS 1236621 1238171 . - 0 ID=cds1168;Parent=gene1212;Dbxref=Genbank:WP_001310610.1;Name=WP_001310610.1;gbkey=CDS;product=cyclic-di-GMP phosphodiesterase;protein_id=WP_001310610.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1238335 1238805 . - . ID=gene1213;Name=SH04_RS06080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06080;old_locus_tag=SH04_06075 NZ_CP010443.1 Protein Homology CDS 1238335 1238805 . - 0 ID=cds1169;Parent=gene1213;Dbxref=Genbank:WP_000136192.1;Name=WP_000136192.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000136192.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1238921 1239472 . - . ID=gene1214;Name=SH04_RS06085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06085;old_locus_tag=SH04_06080 NZ_CP010443.1 Protein Homology CDS 1238921 1239472 . - 0 ID=cds1170;Parent=gene1214;Dbxref=Genbank:WP_000102564.1;Name=WP_000102564.1;gbkey=CDS;product=maltose O-acetyltransferase;protein_id=WP_000102564.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1239644 1239862 . - . ID=gene1215;Name=SH04_RS06090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06090;old_locus_tag=SH04_06085 NZ_CP010443.1 Protein Homology CDS 1239644 1239862 . - 0 ID=cds1171;Parent=gene1215;Dbxref=Genbank:WP_001290581.1;Name=WP_001290581.1;Note=with Hns involved in transcriptional regulation of hemolysin%3B non-specific DNA-binding protein which affects the production of multiple proteins;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001290581.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1239888 1240262 . - . ID=gene1216;Name=SH04_RS06095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06095;old_locus_tag=SH04_06090 NZ_CP010443.1 Protein Homology CDS 1239888 1240262 . - 0 ID=cds1172;Parent=gene1216;Dbxref=Genbank:WP_000344800.1;Name=WP_000344800.1;gbkey=CDS;product=Hha toxicity modulator TomB;protein_id=WP_000344800.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1240808 1243957 . - . ID=gene1217;Name=SH04_RS06100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06100;old_locus_tag=SH04_06095 NZ_CP010443.1 Protein Homology CDS 1240808 1243957 . - 0 ID=cds1173;Parent=gene1217;Dbxref=Genbank:WP_001132469.1;Name=WP_001132469.1;gbkey=CDS;product=multidrug efflux RND transporter permease subunit;protein_id=WP_001132469.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1243980 1245173 . - . ID=gene1218;Name=SH04_RS06105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06105;old_locus_tag=SH04_06100 NZ_CP010443.1 Protein Homology CDS 1243980 1245173 . - 0 ID=cds1174;Parent=gene1218;Dbxref=Genbank:WP_001295324.1;Name=WP_001295324.1;Note=with AcrD and TolC forms a transport system involved in resistance to a number of compounds including lipophilic antibiotics;gbkey=CDS;product=MexE family multidrug efflux RND transporter periplasmic adaptor subunit;protein_id=WP_001295324.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1245315 1245962 . + . ID=gene1219;Name=SH04_RS06110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06110;old_locus_tag=SH04_06105 NZ_CP010443.1 Protein Homology CDS 1245315 1245962 . + 0 ID=cds1175;Parent=gene1219;Dbxref=Genbank:WP_000101737.1;Name=WP_000101737.1;Note=regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000101737.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1246090 1249452 . + . ID=gene1220;Name=SH04_RS06115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06115;old_locus_tag=SH04_06110 NZ_CP010443.1 Protein Homology CDS 1246090 1249452 . + 0 ID=cds1176;Parent=gene1220;Dbxref=Genbank:WP_000177732.1;Name=WP_000177732.1;gbkey=CDS;product=mechanosensitive channel MscK;protein_id=WP_000177732.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1249490 1249630 . - . ID=gene1221;Name=SH04_RS06120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06120;old_locus_tag=SH04_06115 NZ_CP010443.1 Protein Homology CDS 1249490 1249630 . - 0 ID=cds1177;Parent=gene1221;Dbxref=Genbank:WP_001442340.1;Name=WP_001442340.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001442340.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1249664 1249825 . - . ID=gene1222;Name=SH04_RS06125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06125;old_locus_tag=SH04_06120 NZ_CP010443.1 Protein Homology CDS 1249664 1249825 . - 0 ID=cds1178;Parent=gene1222;Dbxref=Genbank:WP_000051153.1;Name=WP_000051153.1;gbkey=CDS;product=DUF2496 domain-containing protein;protein_id=WP_000051153.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1249839 1250366 . - . ID=gene1223;Name=SH04_RS06130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06130;old_locus_tag=SH04_06125 NZ_CP010443.1 Protein Homology CDS 1249839 1250366 . - 0 ID=cds1179;Parent=gene1223;Dbxref=Genbank:WP_000844874.1;Name=WP_000844874.1;Note=PriC%3B protein involved in DNA replication%3B part of the primosome%2C a protein complex required to restart stalled replication forks%3B binds the complex formed by PriA%2C PriB and DNA%3B PriC-dependent primosome requires a gap to restart DNA replication%3B stimulates Rep activity at stalled forks;gbkey=CDS;product=primosomal replication protein N'';protein_id=WP_000844874.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1250436 1250813 . + . ID=gene1224;Name=SH04_RS06135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06135;old_locus_tag=SH04_06130 NZ_CP010443.1 Protein Homology CDS 1250436 1250813 . + 0 ID=cds1180;Parent=gene1224;Dbxref=Genbank:WP_001188905.1;Name=WP_001188905.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001188905.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1250966 1251517 . + . ID=gene1225;Name=SH04_RS06140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06140;old_locus_tag=SH04_06135 NZ_CP010443.1 Protein Homology CDS 1250966 1251517 . + 0 ID=cds1181;Parent=gene1225;Dbxref=Genbank:WP_000127356.1;Name=WP_000127356.1;Note=catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis;gbkey=CDS;product=adenine phosphoribosyltransferase;protein_id=WP_000127356.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1251646 1253577 . + . ID=gene1226;Name=SH04_RS06145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06145;old_locus_tag=SH04_06140 NZ_CP010443.1 Protein Homology CDS 1251646 1253577 . + 0 ID=cds1182;Parent=gene1226;Dbxref=Genbank:WP_000122013.1;Name=WP_000122013.1;Note=catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the tau chain serves as a scaffold to help in the dimerizaton of the alpha%2Cepsilon and theta core complex%3B the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA;gbkey=CDS;product=DNA polymerase III subunit tau;protein_id=WP_000122013.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1253630 1253959 . + . ID=gene1227;Name=SH04_RS06150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06150;old_locus_tag=SH04_06145 NZ_CP010443.1 Protein Homology CDS 1253630 1253959 . + 0 ID=cds1183;Parent=gene1227;Dbxref=Genbank:WP_000467098.1;Name=WP_000467098.1;gbkey=CDS;product=nucleoid-associated protein;protein_id=WP_000467098.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1253959 1254564 . + . ID=gene1228;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=SH04_RS06155;old_locus_tag=SH04_06150 NZ_CP010443.1 Protein Homology CDS 1253959 1254564 . + 0 ID=cds1184;Parent=gene1228;Dbxref=Genbank:WP_001195025.1;Name=WP_001195025.1;Note=involved in a recombinational process of DNA repair%2C independent of the recBC complex;gbkey=CDS;gene=recR;product=recombination protein RecR;protein_id=WP_001195025.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1254674 1256548 . + . ID=gene1229;Name=SH04_RS06160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06160;old_locus_tag=SH04_06155 NZ_CP010443.1 Protein Homology CDS 1254674 1256548 . + 0 ID=cds1185;Parent=gene1229;Dbxref=Genbank:WP_000678201.1;Name=WP_000678201.1;Note=molecular chaperone;gbkey=CDS;product=chaperone protein HtpG;protein_id=WP_000678201.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1256729 1257373 . + . ID=gene1230;Name=adk;gbkey=Gene;gene=adk;gene_biotype=protein_coding;locus_tag=SH04_RS06165;old_locus_tag=SH04_06160 NZ_CP010443.1 Protein Homology CDS 1256729 1257373 . + 0 ID=cds1186;Parent=gene1230;Dbxref=Genbank:WP_001220233.1;Name=WP_001220233.1;Note=essential enzyme that recycles AMP in active cells%3B converts ATP and AMP to two molecules of ADP;gbkey=CDS;gene=adk;product=adenylate kinase;protein_id=WP_001220233.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1257609 1258571 . + . ID=gene1231;Name=SH04_RS06170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06170;old_locus_tag=SH04_06165 NZ_CP010443.1 Protein Homology CDS 1257609 1258571 . + 0 ID=cds1187;Parent=gene1231;Dbxref=Genbank:WP_001250103.1;Name=WP_001250103.1;gbkey=CDS;product=ferrochelatase;protein_id=WP_001250103.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1258568 1259527 . - . ID=gene1232;Name=SH04_RS06175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06175;old_locus_tag=SH04_06170 NZ_CP010443.1 Protein Homology CDS 1258568 1259527 . - 0 ID=cds1188;Parent=gene1232;Dbxref=Genbank:WP_000801813.1;Name=WP_000801813.1;gbkey=CDS;product=acetyl esterase;protein_id=WP_000801813.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1259679 1260983 . + . ID=gene1233;Name=SH04_RS06180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06180;old_locus_tag=SH04_06175 NZ_CP010443.1 Protein Homology CDS 1259679 1260983 . + 0 ID=cds1189;Parent=gene1233;Dbxref=Genbank:WP_000671574.1;Name=WP_000671574.1;Note=catalyzes the formation of inosine/guanosine monophosphate from inosine or guanosine and ATP;gbkey=CDS;product=inosine-guanosine kinase;protein_id=WP_000671574.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1261116 1262792 . - . ID=gene1234;Name=SH04_RS06185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06185;old_locus_tag=SH04_06180 NZ_CP010443.1 Protein Homology CDS 1261116 1262792 . - 0 ID=cds1190;Parent=gene1234;Dbxref=Genbank:WP_000546237.1;Name=WP_000546237.1;Note=YbaL%3B member of the CPA-2 family of antiporters%3B uncharacterized protein;gbkey=CDS;product=hypothetical protein;protein_id=WP_000546237.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1263030 1264250 . - . ID=gene1235;Name=SH04_RS06190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06190;old_locus_tag=SH04_06185 NZ_CP010443.1 Protein Homology CDS 1263030 1264250 . - 0 ID=cds1191;Parent=gene1235;Dbxref=Genbank:WP_001251608.1;Name=WP_001251608.1;gbkey=CDS;product=fosmidomycin resistance protein;protein_id=WP_001251608.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1264468 1266120 . + . ID=gene1236;Name=ushA;gbkey=Gene;gene=ushA;gene_biotype=protein_coding;locus_tag=SH04_RS06195;old_locus_tag=SH04_06190 NZ_CP010443.1 Protein Homology CDS 1264468 1266120 . + 0 ID=cds1192;Parent=gene1236;Dbxref=Genbank:WP_000771748.1;Name=WP_000771748.1;Note=catalyzes the degradation of periplasmic UDP-glucose to uridine%2C glucose-1-phosphate and inorganic phosphate%3B specific for uridine nucleotides;gbkey=CDS;gene=ushA;product=protein UshA;protein_id=WP_000771748.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1266157 1266636 . - . ID=gene1237;Name=SH04_RS06200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06200;old_locus_tag=SH04_06195 NZ_CP010443.1 Protein Homology CDS 1266157 1266636 . - 0 ID=cds1193;Parent=gene1237;Dbxref=Genbank:WP_000186631.1;Name=WP_000186631.1;gbkey=CDS;product=cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK;protein_id=WP_000186631.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1266840 1267634 . - . ID=gene1238;Name=SH04_RS06205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06205;old_locus_tag=SH04_06200 NZ_CP010443.1 Protein Homology CDS 1266840 1267634 . - 0 ID=cds1194;Parent=gene1238;Dbxref=Genbank:WP_000365173.1;Name=WP_000365173.1;gbkey=CDS;product=TraB family protein;protein_id=WP_000365173.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1267772 1268113 . + . ID=gene1239;Name=SH04_RS06210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06210;old_locus_tag=SH04_06205 NZ_CP010443.1 Protein Homology CDS 1267772 1268113 . + 0 ID=cds1195;Parent=gene1239;Dbxref=Genbank:WP_000806442.1;Name=WP_000806442.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000806442.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1268135 1268372 . + . ID=id80;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1268429 1270933 . - . ID=gene1240;Name=copA;gbkey=Gene;gene=copA;gene_biotype=protein_coding;locus_tag=SH04_RS06215;old_locus_tag=SH04_06210 NZ_CP010443.1 Protein Homology CDS 1268429 1270933 . - 0 ID=cds1196;Parent=gene1240;Dbxref=Genbank:WP_000083955.1;Name=WP_000083955.1;gbkey=CDS;gene=copA;product=copper-exporting P-type ATPase A;protein_id=WP_000083955.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1271195 1272127 . + . ID=gene1241;Name=SH04_RS06220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06220;old_locus_tag=SH04_06215 NZ_CP010443.1 Protein Homology CDS 1271195 1272127 . + 0 ID=cds1197;Parent=gene1241;Dbxref=Genbank:WP_000883034.1;Name=WP_000883034.1;Note=catalyzes the formation of glutamate from glutamine;gbkey=CDS;product=glutaminase 1;protein_id=WP_000883034.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1272130 1273422 . + . ID=gene1242;Name=SH04_RS06225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06225;old_locus_tag=SH04_06220 NZ_CP010443.1 Protein Homology CDS 1272130 1273422 . + 0 ID=cds1198;Parent=gene1242;Dbxref=Genbank:WP_000982172.1;Name=WP_000982172.1;gbkey=CDS;product=transporter;protein_id=WP_000982172.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1273547 1273954 . + . ID=gene1243;Name=SH04_RS06230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06230;old_locus_tag=SH04_06225 NZ_CP010443.1 Protein Homology CDS 1273547 1273954 . + 0 ID=cds1199;Parent=gene1243;Dbxref=Genbank:WP_001026747.1;Name=WP_001026747.1;Note=activator of copper-responsive regulon genes;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001026747.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1273955 1274413 . - . ID=gene1244;Name=SH04_RS06235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06235;old_locus_tag=SH04_06230 NZ_CP010443.1 Protein Homology CDS 1273955 1274413 . - 0 ID=cds1200;Parent=gene1244;Dbxref=Genbank:WP_000970323.1;Name=WP_000970323.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000970323.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1274410 1275327 . - . ID=gene1245;Name=SH04_RS06240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06240;old_locus_tag=SH04_06235 NZ_CP010443.1 Protein Homology CDS 1274410 1275327 . - 0 ID=cds1201;Parent=gene1245;Dbxref=Genbank:WP_000904502.1;Name=WP_000904502.1;gbkey=CDS;product=protein QmcA;protein_id=WP_000904502.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1275473 1276150 . + . ID=gene1246;Name=SH04_RS06245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06245;old_locus_tag=SH04_06240 NZ_CP010443.1 Protein Homology CDS 1275473 1276150 . + 0 ID=cds1202;Parent=gene1246;Dbxref=Genbank:WP_001157540.1;Name=WP_001157540.1;gbkey=CDS;product=iron export ATP-binding protein FetA;protein_id=WP_001157540.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1276137 1276916 . + . ID=gene1247;Name=SH04_RS06250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06250;old_locus_tag=SH04_06245 NZ_CP010443.1 Protein Homology CDS 1276137 1276916 . + 0 ID=cds1203;Parent=gene1247;Dbxref=Genbank:WP_001295323.1;Name=WP_001295323.1;gbkey=CDS;product=iron export permease FetB;protein_id=WP_001295323.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1276979 1277833 . - . ID=gene1248;Name=SH04_RS06255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06255;old_locus_tag=SH04_06250 NZ_CP010443.1 Protein Homology CDS 1276979 1277833 . - 0 ID=cds1204;Parent=gene1248;Dbxref=Genbank:WP_001300573.1;Name=WP_001300573.1;gbkey=CDS;product=molecular chaperone DnaK;protein_id=WP_001300573.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1277894 1278664 . - . ID=gene1249;Name=SH04_RS06260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06260;old_locus_tag=SH04_06255 NZ_CP010443.1 Protein Homology CDS 1277894 1278664 . - 0 ID=cds1205;Parent=gene1249;Dbxref=Genbank:WP_001298340.1;Name=WP_001298340.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_001298340.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1278693 1279316 . - . ID=gene1250;Name=SH04_RS06265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06265;old_locus_tag=SH04_06260 NZ_CP010443.1 Protein Homology CDS 1278693 1279316 . - 0 ID=cds1206;Parent=gene1250;Dbxref=Genbank:WP_001295836.1;Name=WP_001295836.1;gbkey=CDS;product=multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1;protein_id=WP_001295836.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1279287 1279973 . + . ID=gene1251;Name=SH04_RS06270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06270;old_locus_tag=SH04_06265 NZ_CP010443.1 Protein Homology CDS 1279287 1279973 . + 0 ID=cds1207;Parent=gene1251;Dbxref=Genbank:WP_001110573.1;Name=WP_001110573.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_001110573.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1279970 1282384 . + . ID=gene1252;Name=SH04_RS06275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06275;old_locus_tag=SH04_06270 NZ_CP010443.1 Protein Homology CDS 1279970 1282384 . + 0 ID=cds1208;Parent=gene1252;Dbxref=Genbank:WP_000561872.1;Name=WP_000561872.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_000561872.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1282815 1287095 . + . ID=gene1253;Name=SH04_RS06280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06280;old_locus_tag=SH04_06275 NZ_CP010443.1 Protein Homology CDS 1282815 1287095 . + 0 ID=cds1209;Parent=gene1253;Dbxref=Genbank:WP_000014739.1;Name=WP_000014739.1;gbkey=CDS;product=RHS element protein;protein_id=WP_000014739.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1285044 1286551 . + . ID=id81;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1287135 1287503 . + . ID=gene1254;Name=SH04_RS06285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06285;old_locus_tag=SH04_06280 NZ_CP010443.1 Protein Homology CDS 1287135 1287503 . + 0 ID=cds1210;Parent=gene1254;Dbxref=Genbank:WP_000877768.1;Name=WP_000877768.1;gbkey=CDS;product=immunity protein;protein_id=WP_000877768.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1287503 1288213 . + . ID=gene1255;Name=SH04_RS06290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06290;old_locus_tag=SH04_06285 NZ_CP010443.1 Protein Homology CDS 1287503 1288213 . + 0 ID=cds1211;Parent=gene1255;Dbxref=Genbank:WP_001300714.1;Name=WP_001300714.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001300714.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1288194 1288454 . + . ID=gene1256;Name=SH04_RS06295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06295;old_locus_tag=SH04_06290 NZ_CP010443.1 Protein Homology CDS 1288194 1288454 . + 0 ID=cds1212;Parent=gene1256;Dbxref=Genbank:WP_001320180.1;Name=WP_001320180.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001320180.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1289199 1289570 . - . ID=gene1257;Name=SH04_RS06300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06300;old_locus_tag=SH04_06295 NZ_CP010443.1 Protein Homology CDS 1289199 1289570 . - 0 ID=cds1213;Parent=gene1257;Dbxref=Genbank:WP_000903287.1;Name=WP_000903287.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000903287.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1289686 1290780 . - . ID=gene1258;Name=SH04_RS06305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06305;old_locus_tag=SH04_06300 NZ_CP010443.1 Protein Homology CDS 1289686 1290780 . - 0 ID=cds1214;Parent=gene1258;Dbxref=Genbank:WP_001157938.1;Name=WP_001157938.1;Note=catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA;gbkey=CDS;product=tRNA 2-selenouridine synthase;protein_id=WP_001157938.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1290849 1291775 . - . ID=gene1259;Name=SH04_RS06310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06310;old_locus_tag=SH04_06305 NZ_CP010443.1 Protein Homology CDS 1290849 1291775 . - 0 ID=cds1215;Parent=gene1259;Dbxref=Genbank:WP_000460145.1;Name=WP_000460145.1;Note=activator of the allDC-ylbA operon involved in allantoin utilization;gbkey=CDS;product=HTH-type transcriptional activator AllS;protein_id=WP_000460145.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1292005 1292487 . + . ID=gene1260;Name=SH04_RS06315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06315;old_locus_tag=SH04_06310 NZ_CP010443.1 Protein Homology CDS 1292005 1292487 . + 0 ID=cds1216;Parent=gene1260;Dbxref=Genbank:WP_000776377.1;Name=WP_000776377.1;gbkey=CDS;product=ureidoglycolate lyase;protein_id=WP_000776377.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1292565 1293380 . + . ID=gene1261;Name=SH04_RS06320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06320;old_locus_tag=SH04_06315 NZ_CP010443.1 Protein Homology CDS 1292565 1293380 . + 0 ID=cds1217;Parent=gene1261;Dbxref=Genbank:WP_000141275.1;Name=WP_000141275.1;Note=regulates operons involved in the utilization of allantoin;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000141275.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1293470 1295251 . + . ID=gene1262;Name=SH04_RS06325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06325;old_locus_tag=SH04_06320 NZ_CP010443.1 Protein Homology CDS 1293470 1295251 . + 0 ID=cds1218;Parent=gene1262;Dbxref=Genbank:WP_001096881.1;Name=WP_001096881.1;Note=catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate;gbkey=CDS;product=glyoxylate carboligase;protein_id=WP_001096881.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1295264 1296040 . + . ID=gene1263;Name=SH04_RS06330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06330;old_locus_tag=SH04_06325 NZ_CP010443.1 Protein Homology CDS 1295264 1296040 . + 0 ID=cds1219;Parent=gene1263;Dbxref=Genbank:WP_000943544.1;Name=WP_000943544.1;gbkey=CDS;product=hydroxypyruvate isomerase;protein_id=WP_000943544.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1296140 1297018 . + . ID=gene1264;Name=SH04_RS06335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06335;old_locus_tag=SH04_06330 NZ_CP010443.1 Protein Homology CDS 1296140 1297018 . + 0 ID=cds1220;Parent=gene1264;Dbxref=Genbank:WP_000765839.1;Name=WP_000765839.1;Note=NADH-dependent%3B catalyzed the reversible formation of glycerate from tartronate semialdehyde;gbkey=CDS;product=2-hydroxy-3-oxopropionate reductase;protein_id=WP_000765839.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1297187 1298641 . + . ID=gene1265;Name=SH04_RS06340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06340;old_locus_tag=SH04_06335 NZ_CP010443.1 Protein Homology CDS 1297187 1298641 . + 0 ID=cds1221;Parent=gene1265;Dbxref=Genbank:WP_000401100.1;Name=WP_000401100.1;gbkey=CDS;product=allantoin transporter;protein_id=WP_000401100.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1298701 1300062 . + . ID=gene1266;Name=SH04_RS06345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06345;old_locus_tag=SH04_06340 NZ_CP010443.1 Protein Homology CDS 1298701 1300062 . + 0 ID=cds1222;Parent=gene1266;Dbxref=Genbank:WP_000006900.1;Name=WP_000006900.1;Note=Plays a crucial role on both purine and pyrimidine metabolism;gbkey=CDS;product=allantoinase;protein_id=WP_000006900.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1300119 1301420 . + . ID=gene1267;Name=SH04_RS06350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06350;old_locus_tag=SH04_06345 NZ_CP010443.1 Protein Homology CDS 1300119 1301420 . + 0 ID=cds1223;Parent=gene1267;Dbxref=Genbank:WP_001302767.1;Name=WP_001302767.1;gbkey=CDS;product=uracil/xanthine transporter;protein_id=WP_001302767.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1301442 1302587 . + . ID=gene1268;Name=SH04_RS06355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06355;old_locus_tag=SH04_06350 NZ_CP010443.1 Protein Homology CDS 1301442 1302587 . + 0 ID=cds1224;Parent=gene1268;Dbxref=Genbank:WP_001333621.1;Name=WP_001333621.1;gbkey=CDS;product=glycerate kinase;protein_id=WP_001333621.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1302815 1303600 . - . ID=gene1269;Name=SH04_RS06360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06360;old_locus_tag=SH04_06355 NZ_CP010443.1 Protein Homology CDS 1302815 1303600 . - 0 ID=cds1225;Parent=gene1269;Dbxref=Genbank:WP_000540997.1;Name=WP_000540997.1;gbkey=CDS;product=(S)-ureidoglycine aminohydrolase;protein_id=WP_000540997.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1303611 1304846 . - . ID=gene1270;Name=SH04_RS06365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06365;old_locus_tag=SH04_06360 NZ_CP010443.1 Protein Homology CDS 1303611 1304846 . - 0 ID=cds1226;Parent=gene1270;Dbxref=Genbank:WP_001310618.1;Name=WP_001310618.1;gbkey=CDS;product=allantoate amidohydrolase;protein_id=WP_001310618.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1304868 1305917 . - . ID=gene1271;Name=SH04_RS06370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06370;old_locus_tag=SH04_06365 NZ_CP010443.1 Protein Homology CDS 1304868 1305917 . - 0 ID=cds1227;Parent=gene1271;Dbxref=Genbank:WP_000703900.1;Name=WP_000703900.1;Note=catalyzes the formation of oxalurate from ureidoglycolate;gbkey=CDS;product=ureidoglycolate dehydrogenase (NAD+);protein_id=WP_000703900.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1306234 1307901 . + . ID=gene1272;Name=SH04_RS06375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06375;old_locus_tag=SH04_06370 NZ_CP010443.1 Protein Homology CDS 1306234 1307901 . + 0 ID=cds1228;Parent=gene1272;Dbxref=Genbank:WP_000580829.1;Name=WP_000580829.1;Note=multicopy suppressor of dominant negative ftsH mutations%3B putative acyl-CoA synthetase;gbkey=CDS;product=protein FdrA;protein_id=WP_000580829.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1307911 1309170 . + . ID=gene1273;Name=SH04_RS06380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06380;old_locus_tag=SH04_06375 NZ_CP010443.1 Protein Homology CDS 1307911 1309170 . + 0 ID=cds1229;Parent=gene1273;Dbxref=Genbank:WP_000495367.1;Name=WP_000495367.1;gbkey=CDS;product=DUF1116 domain-containing protein;protein_id=WP_000495367.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1309181 1309996 . + . ID=gene1274;Name=SH04_RS06385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06385;old_locus_tag=SH04_06380 NZ_CP010443.1 Protein Homology CDS 1309181 1309996 . + 0 ID=cds1230;Parent=gene1274;Dbxref=Genbank:WP_000152519.1;Name=WP_000152519.1;gbkey=CDS;product=anaerobic allantoin catabolic oxamate carbamoyltransferase%3B DUF2877 family protein;protein_id=WP_000152519.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1309993 1310886 . + . ID=gene1275;Name=SH04_RS06390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06390;old_locus_tag=SH04_06385 NZ_CP010443.1 Protein Homology CDS 1309993 1310886 . + 0 ID=cds1231;Parent=gene1275;Dbxref=Genbank:WP_000855379.1;Name=WP_000855379.1;Note=reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP;gbkey=CDS;product=carbamate kinase;protein_id=WP_000855379.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1311081 1312148 . - . ID=gene1276;Name=SH04_RS06395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06395;old_locus_tag=SH04_06390 NZ_CP010443.1 Protein Homology CDS 1311081 1312148 . - 0 ID=cds1232;Parent=gene1276;Dbxref=Genbank:WP_000815571.1;Name=WP_000815571.1;gbkey=CDS;product=N5-carboxyaminoimidazole ribonucleotide synthase;protein_id=WP_000815571.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1312145 1312654 . - . ID=gene1277;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;locus_tag=SH04_RS06400;old_locus_tag=SH04_06395 NZ_CP010443.1 Protein Homology CDS 1312145 1312654 . - 0 ID=cds1233;Parent=gene1277;Dbxref=Genbank:WP_001295318.1;Name=WP_001295318.1;Note=catalyzes the formation of 4-carboxy-5-aminoimidazole ribonucleotide from N5-carboxyaminoimidazole ribonucleotide;gbkey=CDS;gene=purE;product=N5-carboxyaminoimidazole ribonucleotide mutase;protein_id=WP_001295318.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1312772 1313494 . - . ID=gene1278;Name=SH04_RS06405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06405;old_locus_tag=SH04_06400 NZ_CP010443.1 Protein Homology CDS 1312772 1313494 . - 0 ID=cds1234;Parent=gene1278;Dbxref=Genbank:WP_000212247.1;Name=WP_000212247.1;Note=catalyzes the formation of 2%2C3%3Ddiacylglucosamine 1-phosphate from UDP-2%2C3%3Ddiacylglucosamine;gbkey=CDS;product=UDP-2%2C3-diacylglucosamine hydrolase;protein_id=WP_000212247.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1313497 1313991 . - . ID=gene1279;Name=SH04_RS06410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06410;old_locus_tag=SH04_06405 NZ_CP010443.1 Protein Homology CDS 1313497 1313991 . - 0 ID=cds1235;Parent=gene1279;Dbxref=Genbank:WP_000255997.1;Name=WP_000255997.1;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_000255997.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1314165 1315550 . + . ID=gene1280;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=SH04_RS06415;old_locus_tag=SH04_06410 NZ_CP010443.1 Protein Homology CDS 1314165 1315550 . + 0 ID=cds1236;Parent=gene1280;Dbxref=Genbank:WP_000912385.1;Name=WP_000912385.1;Note=catalyzes a two-step reaction%3B charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA;gbkey=CDS;gene=cysS;product=cysteine--tRNA ligase;protein_id=WP_000912385.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1315586 1316107 . - . ID=gene1281;Name=SH04_RS06420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06420;old_locus_tag=SH04_06415 NZ_CP010443.1 Protein Homology CDS 1315586 1316107 . - 0 ID=cds1237;Parent=gene1281;Dbxref=Genbank:WP_001143542.1;Name=WP_001143542.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001143542.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1316215 1316427 . - . ID=gene1282;Name=SH04_RS06425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06425;old_locus_tag=SH04_06420 NZ_CP010443.1 Protein Homology CDS 1316215 1316427 . - 0 ID=cds1238;Parent=gene1282;Dbxref=Genbank:WP_000190288.1;Name=WP_000190288.1;gbkey=CDS;product=ribosome-associated protein;protein_id=WP_000190288.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1316429 1317295 . - . ID=gene1283;Name=SH04_RS06430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06430;old_locus_tag=SH04_06425 NZ_CP010443.1 Protein Homology CDS 1316429 1317295 . - 0 ID=cds1239;Parent=gene1283;Dbxref=Genbank:WP_000729160.1;Name=WP_000729160.1;gbkey=CDS;product=bifunctional protein FolD;protein_id=WP_000729160.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1317766 1318308 . + . ID=gene1284;Name=SH04_RS06435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06435;old_locus_tag=SH04_06430 NZ_CP010443.1 Protein Homology CDS 1317766 1318308 . + 0 ID=cds1240;Parent=gene1284;Dbxref=Genbank:WP_000776555.1;Name=WP_000776555.1;gbkey=CDS;product=FimA homolog%2C function unknown;protein_id=WP_000776555.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1318528 1319220 . + . ID=gene1285;Name=SH04_RS06440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06440;old_locus_tag=SH04_06435 NZ_CP010443.1 Protein Homology CDS 1318528 1319220 . + 0 ID=cds1241;Parent=gene1285;Dbxref=Genbank:WP_000988364.1;Name=WP_000988364.1;gbkey=CDS;product=fimbrial chaperone SfmC;protein_id=WP_000988364.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1319251 1321854 . + . ID=gene1286;Name=SH04_RS06445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06445;old_locus_tag=SH04_06440 NZ_CP010443.1 Protein Homology CDS 1319251 1321854 . + 0 ID=cds1242;Parent=gene1286;Dbxref=Genbank:WP_001333622.1;Name=WP_001333622.1;gbkey=CDS;product=outer membrane usher protein SfmD;protein_id=WP_001333622.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1321896 1322873 . + . ID=gene1287;Name=fimH;gbkey=Gene;gene=fimH;gene_biotype=protein_coding;locus_tag=SH04_RS06450;old_locus_tag=SH04_06445 NZ_CP010443.1 Protein Homology CDS 1321896 1322873 . + 0 ID=cds1243;Parent=gene1287;Dbxref=Genbank:WP_001301128.1;Name=WP_001301128.1;Note=involved in the regulation of fimbriae length and mediates adhesion of type 1 fimbriae;gbkey=CDS;gene=fimH;product=adhesin;protein_id=WP_001301128.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1322884 1323399 . + . ID=gene1288;Name=SH04_RS06455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06455;old_locus_tag=SH04_06450 NZ_CP010443.1 Protein Homology CDS 1322884 1323399 . + 0 ID=cds1244;Parent=gene1288;Dbxref=Genbank:WP_001255230.1;Name=WP_001255230.1;gbkey=CDS;product=FimA homolog%2C function unknown;protein_id=WP_001255230.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1323402 1324034 . - . ID=gene1289;Name=SH04_RS06460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06460;old_locus_tag=SH04_06455 NZ_CP010443.1 Protein Homology CDS 1323402 1324034 . - 0 ID=cds1245;Parent=gene1289;Dbxref=Genbank:WP_000805428.1;Name=WP_000805428.1;Note=activates the production of the major fimbrae protein FimA;gbkey=CDS;product=fimbriae Z protein;protein_id=WP_000805428.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1324277 1324353 . + . ID=gene1290;Name=SH04_RS06465;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS06465;old_locus_tag=SH04_06460 NZ_CP010443.1 tRNAscan-SE tRNA 1324277 1324353 . + . ID=rna44;Parent=gene1290;anticodon=(pos:1324311..1324313);gbkey=tRNA;product=tRNA-Arg NZ_CP010443.1 tRNAscan-SE exon 1324277 1324353 . + . ID=id82;Parent=rna44;anticodon=(pos:1324311..1324313);gbkey=tRNA;product=tRNA-Arg NZ_CP010443.1 RefSeq gene 1324369 1325532 . - . ID=gene1291;Name=SH04_RS06470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06470;old_locus_tag=SH04_06465 NZ_CP010443.1 Protein Homology CDS 1324369 1325532 . - 0 ID=cds1246;Parent=gene1291;Dbxref=Genbank:WP_001350488.1;Name=WP_001350488.1;gbkey=CDS;product=integrase;protein_id=WP_001350488.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1325652 1325915 . - . ID=gene1292;Name=SH04_RS06475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06475;old_locus_tag=SH04_06470 NZ_CP010443.1 Protein Homology CDS 1325652 1325915 . - 0 ID=cds1247;Parent=gene1292;Dbxref=Genbank:WP_000672150.1;Name=WP_000672150.1;gbkey=CDS;product=exonuclease;protein_id=WP_000672150.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1326005 1326241 . + . ID=gene1293;Name=SH04_RS06480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06480;old_locus_tag=SH04_06475 NZ_CP010443.1 Protein Homology CDS 1326005 1326241 . + 0 ID=cds1248;Parent=gene1293;Dbxref=Genbank:WP_000258409.1;Name=WP_000258409.1;gbkey=CDS;product=replication protein;protein_id=WP_000258409.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1326238 1326333 . + . ID=gene1294;Name=SH04_RS06485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06485;old_locus_tag=SH04_06480 NZ_CP010443.1 Protein Homology CDS 1326238 1326333 . + 0 ID=cds1249;Parent=gene1294;Dbxref=Genbank:WP_000145909.1;Name=WP_000145909.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000145909.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1326325 1327589 . + . ID=id83;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1326396 1326695 . + . ID=gene1295;Name=SH04_RS06490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06490;old_locus_tag=SH04_06485 NZ_CP010443.1 Protein Homology CDS 1326396 1326695 . + 0 ID=cds1250;Parent=gene1295;Dbxref=Genbank:WP_000169527.1;Name=WP_000169527.1;gbkey=CDS;product=transposase;protein_id=WP_000169527.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1326692 1327558 . + . ID=gene1296;Name=SH04_RS06495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06495;old_locus_tag=SH04_06490 NZ_CP010443.1 Protein Homology CDS 1326692 1327558 . + 0 ID=cds1251;Parent=gene1296;Dbxref=Genbank:WP_000878218.1;Name=WP_000878218.1;gbkey=CDS;product=transposase;protein_id=WP_000878218.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1327589 1327801 . + . ID=gene1297;Name=SH04_RS06500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS06500;partial=true;pseudo=true;start_range=.,1327589 NZ_CP010443.1 Protein Homology CDS 1327589 1327801 . + 0 ID=cds1252;Parent=gene1297;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=protein ren;pseudo=true;start_range=.,1327589;transl_table=11 NZ_CP010443.1 RefSeq gene 1327869 1328201 . + . ID=gene1298;Name=SH04_RS06505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06505;old_locus_tag=SH04_06500 NZ_CP010443.1 Protein Homology CDS 1327869 1328201 . + 0 ID=cds1253;Parent=gene1298;Dbxref=Genbank:WP_001070439.1;Name=WP_001070439.1;gbkey=CDS;product=multidrug SMR transporter;protein_id=WP_001070439.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1328249 1328398 . + . ID=gene1299;Name=SH04_RS06510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06510;old_locus_tag=SH04_06505 NZ_CP010443.1 Protein Homology CDS 1328249 1328398 . + 0 ID=cds1254;Parent=gene1299;Dbxref=Genbank:WP_001372443.1;Name=WP_001372443.1;gbkey=CDS;product=membrane protein;protein_id=WP_001372443.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1328456 1329982 . + . ID=gene1300;Name=SH04_RS06515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06515;old_locus_tag=SH04_06510 NZ_CP010443.1 Protein Homology CDS 1328456 1329982 . + 0 ID=cds1255;Parent=gene1300;Dbxref=Genbank:WP_000709082.1;Name=WP_000709082.1;gbkey=CDS;product=DLP12 prophage%3B recombinase;protein_id=WP_000709082.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1330447 1330998 . + . ID=gene1301;Name=SH04_RS06520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06520;old_locus_tag=SH04_06515 NZ_CP010443.1 Protein Homology CDS 1330447 1330998 . + 0 ID=cds1256;Parent=gene1301;Dbxref=Genbank:WP_001306955.1;Name=WP_001306955.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001306955.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1331008 1331805 . + . ID=gene1302;Name=SH04_RS06525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06525;old_locus_tag=SH04_06520 NZ_CP010443.1 Protein Homology CDS 1331008 1331805 . + 0 ID=cds1257;Parent=gene1302;Dbxref=Genbank:WP_000881075.1;Name=WP_000881075.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000881075.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1332020 1332475 . + . ID=gene1303;Name=SH04_RS06530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06530;old_locus_tag=SH04_06525 NZ_CP010443.1 Protein Homology CDS 1332020 1332475 . + 0 ID=cds1258;Parent=gene1303;Dbxref=Genbank:WP_001054340.1;Name=WP_001054340.1;Note=DLP12 prophage;gbkey=CDS;product=DLP12 prophage%3B uncharacterized protein;protein_id=WP_001054340.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1332475 1332645 . + . ID=gene1304;Name=SH04_RS06535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06535;old_locus_tag=SH04_06530 NZ_CP010443.1 Protein Homology CDS 1332475 1332645 . + 0 ID=cds1259;Parent=gene1304;Dbxref=Genbank:WP_000224915.1;Name=WP_000224915.1;Note=DLP12 prophage%3B conserved protein similar to phage 82 and lambda proteins;gbkey=CDS;product=protein NinE from lambdoid prophage DLP12;protein_id=WP_000224915.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1332638 1332928 . + . ID=gene1305;Name=SH04_RS06540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06540;old_locus_tag=SH04_06535 NZ_CP010443.1 Protein Homology CDS 1332638 1332928 . + 0 ID=cds1260;Parent=gene1305;Dbxref=Genbank:WP_000774486.1;Name=WP_000774486.1;gbkey=CDS;product=DLP12 prophage%3B uncharacterized protein;protein_id=WP_000774486.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1332925 1333287 . + . ID=gene1306;Name=SH04_RS06545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06545;old_locus_tag=SH04_06540 NZ_CP010443.1 Protein Homology CDS 1332925 1333287 . + 0 ID=cds1261;Parent=gene1306;Dbxref=Genbank:WP_001099712.1;Name=WP_001099712.1;gbkey=CDS;product=crossover junction endodeoxyribonuclease RusA;protein_id=WP_001099712.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1333284 1333424 . + . ID=gene1307;Name=SH04_RS06550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06550;old_locus_tag=SH04_06545 NZ_CP010443.1 Protein Homology CDS 1333284 1333424 . + 0 ID=cds1262;Parent=gene1307;Dbxref=Genbank:WP_000971055.1;Name=WP_000971055.1;gbkey=CDS;product=protein%2C DLP12 prophage;protein_id=WP_000971055.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1333510 1333893 . + . ID=gene1308;Name=SH04_RS06555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06555;old_locus_tag=SH04_06550 NZ_CP010443.1 Protein Homology CDS 1333510 1333893 . + 0 ID=cds1263;Parent=gene1308;Dbxref=Genbank:WP_001204791.1;Name=WP_001204791.1;gbkey=CDS;product=Antitermination protein Q homolog from lambdoid prophage DLP12;protein_id=WP_001204791.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1334035 1334253 . + . ID=gene1309;Name=SH04_RS06560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06560;old_locus_tag=SH04_06555 NZ_CP010443.1 Protein Homology CDS 1334035 1334253 . + 0 ID=cds1264;Parent=gene1309;Dbxref=Genbank:WP_000901484.1;Name=WP_000901484.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000901484.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1334140 1335344 . + . ID=id84;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1334291 1335271 . - . ID=gene1310;Name=SH04_RS06565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06565;old_locus_tag=SH04_06560 NZ_CP010443.1 Protein Homology CDS 1334291 1335271 . - 0 ID=cds1265;Parent=gene1310;Dbxref=Genbank:WP_000019403.1;Name=WP_000019403.1;gbkey=CDS;product=transposase;protein_id=WP_000019403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1335312 1336379 . - . ID=gene1311;Name=SH04_RS06570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06570;old_locus_tag=SH04_06565 NZ_CP010443.1 Protein Homology CDS 1335312 1336379 . - 0 ID=cds1266;Parent=gene1311;Dbxref=Genbank:WP_000737282.1;Name=WP_000737282.1;gbkey=CDS;product=porin;protein_id=WP_000737282.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1336952 1337167 . + . ID=gene1312;Name=SH04_RS06575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06575;old_locus_tag=SH04_06570 NZ_CP010443.1 Protein Homology CDS 1336952 1337167 . + 0 ID=cds1267;Parent=gene1312;Dbxref=Genbank:WP_000839596.1;Name=WP_000839596.1;gbkey=CDS;product=Lysis protein S homolog from lambdoid prophage DLP12;protein_id=WP_000839596.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1337167 1337664 . + . ID=gene1313;Name=SH04_RS06580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06580;old_locus_tag=SH04_06575 NZ_CP010443.1 Protein Homology CDS 1337167 1337664 . + 0 ID=cds1268;Parent=gene1313;Dbxref=Genbank:WP_001135281.1;Name=WP_001135281.1;gbkey=CDS;product=lysozyme RrrD;protein_id=WP_001135281.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1337661 1338122 . + . ID=gene1314;Name=SH04_RS06585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06585;old_locus_tag=SH04_06580 NZ_CP010443.1 Protein Homology CDS 1337661 1338122 . + 0 ID=cds1269;Parent=gene1314;Dbxref=Genbank:WP_000092242.1;Name=WP_000092242.1;gbkey=CDS;product=DLP12 prophage%3B murein endopeptidase;protein_id=WP_000092242.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1337685 1338050 . + . ID=id85;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1338154 1338447 . - . ID=gene1315;Name=SH04_RS06590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06590;old_locus_tag=SH04_06585 NZ_CP010443.1 Protein Homology CDS 1338154 1338447 . - 0 ID=cds1270;Parent=gene1315;Dbxref=Genbank:WP_000738500.1;Name=WP_000738500.1;gbkey=CDS;product=Lipoprotein bor homolog from lambdoid prophage DLP12;protein_id=WP_000738500.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1338598 1338693 . - . ID=gene1316;Name=SH04_RS06595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS06595;partial=true;pseudo=true;start_range=.,1338598 NZ_CP010443.1 Protein Homology CDS 1338598 1338693 . - 0 ID=cds1271;Parent=gene1316;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1338598;transl_table=11 NZ_CP010443.1 RefSeq gene 1338738 1339148 . - . ID=gene1317;Name=SH04_RS06600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06600;old_locus_tag=SH04_06590 NZ_CP010443.1 Protein Homology CDS 1338738 1339148 . - 0 ID=cds1272;Parent=gene1317;Dbxref=Genbank:WP_000079503.1;Name=WP_000079503.1;gbkey=CDS;product=DLP12 prophage%3B uncharacterized protein;protein_id=WP_000079503.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1339434 1339640 . + . ID=gene1318;Name=SH04_RS06605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06605;old_locus_tag=SH04_06595 NZ_CP010443.1 Protein Homology CDS 1339434 1339640 . + 0 ID=cds1273;Parent=gene1318;Dbxref=Genbank:WP_001031427.1;Name=WP_001031427.1;gbkey=CDS;product=DLP12 prophage%3B uncharacterized protein;protein_id=WP_001031427.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1339805 1339999 . - . ID=gene1319;Name=SH04_RS06610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06610;old_locus_tag=SH04_06600 NZ_CP010443.1 Protein Homology CDS 1339805 1339999 . - 0 ID=cds1274;Parent=gene1319;Dbxref=Genbank:WP_001421937.1;Name=WP_001421937.1;gbkey=CDS;product=DUF3950 domain-containing protein;protein_id=WP_001421937.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1339863 1340916 . + . ID=id86;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1340147 1340248 . + . ID=gene1320;Name=SH04_RS06615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06615;old_locus_tag=SH04_06605 NZ_CP010443.1 Protein Homology CDS 1340147 1340248 . + 0 ID=cds1275;Parent=gene1320;Dbxref=Genbank:WP_032143627.1;Name=WP_032143627.1;gbkey=CDS;product=DNA-packaging protein;protein_id=WP_032143627.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1340388 1340933 . + . ID=gene1321;Name=SH04_RS06620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06620;old_locus_tag=SH04_06610 NZ_CP010443.1 Protein Homology CDS 1340388 1340933 . + 0 ID=cds1276;Parent=gene1321;Dbxref=Genbank:WP_000453566.1;Name=WP_000453566.1;gbkey=CDS;product=DNA-packaging protein NU1 homolog;protein_id=WP_000453566.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1340908 1341651 . + . ID=gene1322;Name=SH04_RS06625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06625;old_locus_tag=SH04_06615 NZ_CP010443.1 Protein Homology CDS 1340908 1341651 . + 0 ID=cds1277;Parent=gene1322;Dbxref=Genbank:WP_001027248.1;Name=WP_001027248.1;gbkey=CDS;product=tail assembly protein;protein_id=WP_001027248.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1341213 1341613 . + . ID=id87;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1341706 1342137 . - . ID=gene1323;Name=SH04_RS06630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06630;old_locus_tag=SH04_06620 NZ_CP010443.1 Protein Homology CDS 1341706 1342137 . - 0 ID=cds1278;Parent=gene1323;Dbxref=Genbank:WP_000365231.1;Name=WP_000365231.1;gbkey=CDS;product=SAM-dependent methyltransferase;protein_id=WP_000365231.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1342429 1342689 . + . ID=gene1324;Name=SH04_RS06635;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS06635;pseudo=true NZ_CP010443.1 Protein Homology CDS 1342429 1342689 . + 0 ID=cds1279;Parent=gene1324;gbkey=CDS;product=phage tail protein;pseudo=true;transl_except=(pos:1342612..1342614%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 1343235 1343984 . + . ID=gene1325;Name=SH04_RS06640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06640;old_locus_tag=SH04_06630 NZ_CP010443.1 Protein Homology CDS 1343235 1343984 . + 0 ID=cds1280;Parent=gene1325;Dbxref=Genbank:WP_000386784.1;Name=WP_000386784.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000386784.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1344234 1345187 . - . ID=gene1326;Name=SH04_RS06645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06645;old_locus_tag=SH04_06635 NZ_CP010443.1 Protein Homology CDS 1344234 1345187 . - 0 ID=cds1281;Parent=gene1326;Dbxref=Genbank:WP_001201845.1;Name=WP_001201845.1;gbkey=CDS;product=protease 7;protein_id=WP_001201845.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1345591 1345707 . - . ID=gene1327;Name=SH04_RS06650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06650;old_locus_tag=SH04_06640 NZ_CP010443.1 Protein Homology CDS 1345591 1345707 . - 0 ID=cds1282;Parent=gene1327;Dbxref=Genbank:WP_001443680.1;Name=WP_001443680.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001443680.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1345701 1346462 . - . ID=gene1328;Name=SH04_RS06655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06655;old_locus_tag=SH04_06645 NZ_CP010443.1 Protein Homology CDS 1345701 1346462 . - 0 ID=cds1283;Parent=gene1328;Dbxref=Genbank:WP_001177471.1;Name=WP_001177471.1;Note=involved in the thermoregulation of ompA%2C ompC%2C lamB and envelope proteins;gbkey=CDS;product=porin thermoregulatory protein EnvY;protein_id=WP_001177471.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1346645 1347535 . - . ID=gene1329;Name=SH04_RS06660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06660;old_locus_tag=SH04_06650 NZ_CP010443.1 Protein Homology CDS 1346645 1347535 . - 0 ID=cds1284;Parent=gene1329;Dbxref=Genbank:WP_001224604.1;Name=WP_001224604.1;gbkey=CDS;product=PRK09936 family protein;protein_id=WP_001224604.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1347536 1350508 . - . ID=gene1330;Name=SH04_RS06665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06665;old_locus_tag=SH04_06655 NZ_CP010443.1 Protein Homology CDS 1347536 1350508 . - 0 ID=cds1285;Parent=gene1330;Dbxref=Genbank:WP_000662357.1;Name=WP_000662357.1;gbkey=CDS;product=bacteriophage N4 adsorption protein A;protein_id=WP_000662357.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1350495 1352732 . - . ID=gene1331;Name=nfrB;gbkey=Gene;gene=nfrB;gene_biotype=protein_coding;locus_tag=SH04_RS06670;old_locus_tag=SH04_06660 NZ_CP010443.1 Protein Homology CDS 1350495 1352732 . - 0 ID=cds1286;Parent=gene1331;Dbxref=Genbank:WP_000383932.1;Name=WP_000383932.1;gbkey=CDS;gene=nfrB;product=bacteriophage N4 adsorption protein B;protein_id=WP_000383932.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1352882 1354324 . - . ID=gene1332;Name=SH04_RS06675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06675;old_locus_tag=SH04_06665 NZ_CP010443.1 Protein Homology CDS 1352882 1354324 . - 0 ID=cds1287;Parent=gene1332;Dbxref=Genbank:WP_000253839.1;Name=WP_000253839.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_000253839.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1354314 1354997 . - . ID=gene1333;Name=SH04_RS06680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06680;old_locus_tag=SH04_06670 NZ_CP010443.1 Protein Homology CDS 1354314 1354997 . - 0 ID=cds1288;Parent=gene1333;Dbxref=Genbank:WP_000770953.1;Name=WP_000770953.1;Note=response regulator in two-component regulatory system with CusS%3B regulates the copper efflux system;gbkey=CDS;product=two-component system response regulator;protein_id=WP_000770953.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1355154 1356527 . + . ID=gene1334;Name=SH04_RS06685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06685;old_locus_tag=SH04_06675 NZ_CP010443.1 Protein Homology CDS 1355154 1356527 . + 0 ID=cds1289;Parent=gene1334;Dbxref=Genbank:WP_000074234.1;Name=WP_000074234.1;Note=with CusA%2C CusB and CusF is part of a cation efflux system that mediates resistance to copper and silver;gbkey=CDS;product=cation efflux system protein CusC;protein_id=WP_000074234.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1356534 1356661 . + . ID=id88;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1356685 1357017 . + . ID=gene1335;Name=SH04_RS06690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06690;old_locus_tag=SH04_06680 NZ_CP010443.1 Protein Homology CDS 1356685 1357017 . + 0 ID=cds1290;Parent=gene1335;Dbxref=Genbank:WP_000709870.1;Name=WP_000709870.1;gbkey=CDS;product=cation efflux system protein CusF;protein_id=WP_000709870.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1357033 1358256 . + . ID=gene1336;Name=SH04_RS06695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06695;old_locus_tag=SH04_06685 NZ_CP010443.1 Protein Homology CDS 1357033 1358256 . + 0 ID=cds1291;Parent=gene1336;Dbxref=Genbank:WP_000717157.1;Name=WP_000717157.1;Note=with CusA%2C CusC and CusF is part of a cation efflux system that mediates resistance to copper and silver;gbkey=CDS;product=cation efflux system protein CusB;protein_id=WP_000717157.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1358268 1361411 . + . ID=gene1337;Name=SH04_RS06700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06700;old_locus_tag=SH04_06690 NZ_CP010443.1 Protein Homology CDS 1358268 1361411 . + 0 ID=cds1292;Parent=gene1337;Dbxref=Genbank:WP_000573945.1;Name=WP_000573945.1;gbkey=CDS;product=cation efflux system protein CusA;protein_id=WP_000573945.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1361513 1362889 . + . ID=gene1338;Name=SH04_RS06705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06705;old_locus_tag=SH04_06695 NZ_CP010443.1 Protein Homology CDS 1361513 1362889 . + 0 ID=cds1293;Parent=gene1338;Dbxref=Genbank:WP_000786319.1;Name=WP_000786319.1;gbkey=CDS;product=phenylalanine-specific permease;protein_id=WP_000786319.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1362970 1364217 . - . ID=gene1339;Name=SH04_RS06710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06710;old_locus_tag=SH04_06700 NZ_CP010443.1 Protein Homology CDS 1362970 1364217 . - 0 ID=cds1294;Parent=gene1339;Dbxref=Genbank:WP_001153148.1;Name=WP_001153148.1;gbkey=CDS;product=miniconductance mechanosensitive channel YbdG;protein_id=WP_001153148.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1364325 1364978 . - . ID=gene1340;Name=SH04_RS06715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06715;old_locus_tag=SH04_06705 NZ_CP010443.1 Protein Homology CDS 1364325 1364978 . - 0 ID=cds1295;Parent=gene1340;Dbxref=Genbank:WP_000351487.1;Name=WP_000351487.1;Note=catalyzes the reduction of nitroaromatic compounds such as nitrofurazone%2C quinones and the anti-tumor agent CB1954%3B NAD(P)H-dependent%3B oxygen insensitive;gbkey=CDS;product=oxygen-insensitive NAD(P)H nitroreductase;protein_id=WP_000351487.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1365072 1365440 . - . ID=gene1341;Name=SH04_RS06720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06720;old_locus_tag=SH04_06710 NZ_CP010443.1 Protein Homology CDS 1365072 1365440 . - 0 ID=cds1296;Parent=gene1341;Dbxref=Genbank:WP_000360951.1;Name=WP_000360951.1;gbkey=CDS;product=DUF419 domain-containing protein;protein_id=WP_000360951.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1365505 1365753 . - . ID=gene1342;Name=SH04_RS06725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06725;old_locus_tag=SH04_06715 NZ_CP010443.1 Protein Homology CDS 1365505 1365753 . - 0 ID=cds1297;Parent=gene1342;Dbxref=Genbank:WP_000682509.1;Name=WP_000682509.1;gbkey=CDS;product=DUF1158 domain-containing protein;protein_id=WP_000682509.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1365819 1366937 . - . ID=gene1343;Name=SH04_RS06730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06730;old_locus_tag=SH04_06720 NZ_CP010443.1 Protein Homology CDS 1365819 1366937 . - 0 ID=cds1298;Parent=gene1343;Dbxref=Genbank:WP_001130654.1;Name=WP_001130654.1;gbkey=CDS;product=weak gamma-glutamyl:cysteine ligase;protein_id=WP_001130654.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1366949 1367098 . + . ID=gene1344;Name=SH04_RS06735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06735;old_locus_tag=SH04_06725 NZ_CP010443.1 Protein Homology CDS 1366949 1367098 . + 0 ID=cds1299;Parent=gene1344;Dbxref=Genbank:WP_001324624.1;Name=WP_001324624.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001324624.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1367390 1367542 . + . ID=gene1345;Name=SH04_RS06740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06740;old_locus_tag=SH04_06730 NZ_CP010443.1 Protein Homology CDS 1367390 1367542 . + 0 ID=cds1300;Parent=gene1345;Dbxref=Genbank:WP_000956455.1;Name=WP_000956455.1;gbkey=CDS;product=protein HokE;protein_id=WP_000956455.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1367561 1368905 . + . ID=id89;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1367619 1368731 . + . ID=gene1346;Name=SH04_RS06745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06745;old_locus_tag=SH04_06735 NZ_CP010443.1 Protein Homology CDS 1367619 1368731 . + 0 ID=cds1301;Parent=gene1346;Dbxref=Genbank:WP_001300563.1;Name=WP_001300563.1;gbkey=CDS;product=transposase;protein_id=WP_001300563.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1369013 1369642 . - . ID=gene1347;Name=SH04_RS06750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06750;old_locus_tag=SH04_06740 NZ_CP010443.1 Protein Homology CDS 1369013 1369642 . - 0 ID=cds1302;Parent=gene1347;Dbxref=Genbank:WP_000228136.1;Name=WP_000228136.1;gbkey=CDS;product=4'-phosphopantetheinyl transferase;protein_id=WP_000228136.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1369808 1372048 . - . ID=gene1348;Name=SH04_RS06755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06755;old_locus_tag=SH04_06745 NZ_CP010443.1 Protein Homology CDS 1369808 1372048 . - 0 ID=cds1303;Parent=gene1348;Dbxref=Genbank:WP_001034943.1;Name=WP_001034943.1;Note=Fep%3B Cbt%3B Cbr%3B FeuB%3B FepA%3B PfeA%3B IroN%3B BfeA%3B outer membrane receptor of ferric enterobactin and colicins B and D%3B interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space;gbkey=CDS;product=ferrienterobactin receptor;protein_id=WP_001034943.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1372291 1373493 . + . ID=gene1349;Name=SH04_RS06760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06760;old_locus_tag=SH04_06750 NZ_CP010443.1 Protein Homology CDS 1372291 1373493 . + 0 ID=cds1304;Parent=gene1349;Dbxref=Genbank:WP_000125843.1;Name=WP_000125843.1;gbkey=CDS;product=enterochelin esterase;protein_id=WP_000125843.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1373496 1373714 . + . ID=gene1350;Name=SH04_RS06765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06765;old_locus_tag=SH04_06755 NZ_CP010443.1 Protein Homology CDS 1373496 1373714 . + 0 ID=cds1305;Parent=gene1350;Dbxref=Genbank:WP_000885798.1;Name=WP_000885798.1;gbkey=CDS;product=enterobactin biosynthesis protein YbdZ;protein_id=WP_000885798.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1373711 1377592 . + . ID=gene1351;Name=entF;gbkey=Gene;gene=entF;gene_biotype=protein_coding;locus_tag=SH04_RS06770;old_locus_tag=SH04_06760 NZ_CP010443.1 Protein Homology CDS 1373711 1377592 . + 0 ID=cds1306;Parent=gene1351;Dbxref=Genbank:WP_000077805.1;Name=WP_000077805.1;Note=with EntB%2C EntD%2C and EntE forms the multienzyme complex enterobactin synthase%3B EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin;gbkey=CDS;gene=entF;product=enterobactin synthase component F;protein_id=WP_000077805.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1377808 1378941 . + . ID=gene1352;Name=SH04_RS06775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06775;old_locus_tag=SH04_06765 NZ_CP010443.1 Protein Homology CDS 1377808 1378941 . + 0 ID=cds1307;Parent=gene1352;Dbxref=Genbank:WP_000096692.1;Name=WP_000096692.1;Note=in Salmonella is responsible for long O-antigen polymerization%3B may be part of the ferric enterobactin transport system%3B necessary for enetrobactin uptake;gbkey=CDS;product=ferric enterobactin transporter FepE;protein_id=WP_000096692.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1378938 1379753 . - . ID=gene1353;Name=SH04_RS06780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06780;old_locus_tag=SH04_06770 NZ_CP010443.1 Protein Homology CDS 1378938 1379753 . - 0 ID=cds1308;Parent=gene1353;Dbxref=Genbank:WP_000140647.1;Name=WP_000140647.1;Note=with FepBDE is involved in the transport of ferric enterobactin;gbkey=CDS;product=ferric enterobactin transport ATP-binding protein FepC;protein_id=WP_000140647.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1379750 1380742 . - . ID=gene1354;Name=SH04_RS06785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06785;old_locus_tag=SH04_06775 NZ_CP010443.1 Protein Homology CDS 1379750 1380742 . - 0 ID=cds1309;Parent=gene1354;Dbxref=Genbank:WP_000640988.1;Name=WP_000640988.1;Note=with FepBCD is involved in the transport of ferric enterobactin;gbkey=CDS;product=ferric anguibactin ABC transporter permease;protein_id=WP_000640988.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1380739 1381743 . - . ID=gene1355;Name=SH04_RS06790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06790;old_locus_tag=SH04_06780 NZ_CP010443.1 Protein Homology CDS 1380739 1381743 . - 0 ID=cds1310;Parent=gene1355;Dbxref=Genbank:WP_000016947.1;Name=WP_000016947.1;Note=with FepBCG is involved in the transport of ferric enterobactin;gbkey=CDS;product=ferric anguibactin ABC transporter permease;protein_id=WP_000016947.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1381854 1383104 . + . ID=gene1356;Name=SH04_RS06795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06795;old_locus_tag=SH04_06785 NZ_CP010443.1 Protein Homology CDS 1381854 1383104 . + 0 ID=cds1311;Parent=gene1356;Dbxref=Genbank:WP_001041786.1;Name=WP_001041786.1;Note=protein p43%3B inner membrane protein that exports enterobactin to the periplasmic space%3B member of the major facilitator superfamily (MFS) of transporters;gbkey=CDS;product=enterobactin exporter EntS;protein_id=WP_001041786.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1383108 1384064 . - . ID=gene1357;Name=SH04_RS06800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06800;old_locus_tag=SH04_06790 NZ_CP010443.1 Protein Homology CDS 1383108 1384064 . - 0 ID=cds1312;Parent=gene1357;Dbxref=Genbank:WP_001234311.1;Name=WP_001234311.1;Note=with FepCDG is involved in the transport of ferric enterobactin;gbkey=CDS;product=ferrienterobactin-binding periplasmic protein;protein_id=WP_001234311.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1384439 1385614 . + . ID=gene1358;Name=SH04_RS06805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06805;old_locus_tag=SH04_06795 NZ_CP010443.1 Protein Homology CDS 1384439 1385614 . + 0 ID=cds1313;Parent=gene1358;Dbxref=Genbank:WP_000381303.1;Name=WP_000381303.1;gbkey=CDS;product=isochorismate synthase EntC;protein_id=WP_000381303.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1385624 1387234 . + . ID=gene1359;Name=entE;gbkey=Gene;gene=entE;gene_biotype=protein_coding;locus_tag=SH04_RS06810;old_locus_tag=SH04_06800 NZ_CP010443.1 Protein Homology CDS 1385624 1387234 . + 0 ID=cds1314;Parent=gene1359;Dbxref=Genbank:WP_000026812.1;Name=WP_000026812.1;Note=bifunctional 2%2C3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase%3B activates the carboxylate group of 2%2C3-dihydroxy-benzoate forming (2%2C3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2%2C3-dihydroxy-benzoate adenylate;gbkey=CDS;gene=entE;product=enterobactin synthase component E;protein_id=WP_000026812.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1387248 1388105 . + . ID=gene1360;Name=SH04_RS06815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06815;old_locus_tag=SH04_06805 NZ_CP010443.1 Protein Homology CDS 1387248 1388105 . + 0 ID=cds1315;Parent=gene1360;Dbxref=Genbank:WP_001007138.1;Name=WP_001007138.1;Note=2%2C3 dihydro-2%2C3 dihydroxybenzoate synthase%3B catalyzes the formation of 2%2C3 dihydro-2%2C3 dihydroxybenzoate and pyruvate from isochorismate%3B with Ent DEF is involved in enterobactin synthesis;gbkey=CDS;product=enterobactin synthase component B;protein_id=WP_001007138.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1388105 1388851 . + . ID=gene1361;Name=SH04_RS06820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06820;old_locus_tag=SH04_06810 NZ_CP010443.1 Protein Homology CDS 1388105 1388851 . + 0 ID=cds1316;Parent=gene1361;Dbxref=Genbank:WP_000347651.1;Name=WP_000347651.1;Note=catalyzes the formation of 2%2C3-dihydroxybenzoate from 2%2C3-dihydro-2%2C3-dihydroxybenzoate%3B involved in the biosynthesis of siderophores%2C enterobactin%2C bacillibactin or vibriobactin;gbkey=CDS;product=2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase;protein_id=WP_000347651.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1388854 1389267 . + . ID=gene1362;Name=SH04_RS06825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06825;old_locus_tag=SH04_06815 NZ_CP010443.1 Protein Homology CDS 1388854 1389267 . + 0 ID=cds1317;Parent=gene1362;Dbxref=Genbank:WP_000637953.1;Name=WP_000637953.1;Note=required for efficient enterobactin production;gbkey=CDS;product=proofreading thioesterase EntH;protein_id=WP_000637953.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1389448 1391553 . + . ID=gene1363;Name=SH04_RS06830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06830;old_locus_tag=SH04_06820 NZ_CP010443.1 Protein Homology CDS 1389448 1391553 . + 0 ID=cds1318;Parent=gene1363;Dbxref=Genbank:WP_001043156.1;Name=WP_001043156.1;gbkey=CDS;product=carbon starvation protein A;protein_id=WP_001043156.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1391736 1391933 . + . ID=gene1364;Name=SH04_RS06835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06835;old_locus_tag=SH04_06825 NZ_CP010443.1 Protein Homology CDS 1391736 1391933 . + 0 ID=cds1319;Parent=gene1364;Dbxref=Genbank:WP_000460431.1;Name=WP_000460431.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000460431.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1391943 1393031 . - . ID=gene1365;Name=SH04_RS06840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06840;old_locus_tag=SH04_06830 NZ_CP010443.1 Protein Homology CDS 1391943 1393031 . - 0 ID=cds1320;Parent=gene1365;Dbxref=Genbank:WP_001120441.1;Name=WP_001120441.1;Note=member of the iron-containing alcohol dehydrogenase family;gbkey=CDS;product=oxidoreductase;protein_id=WP_001120441.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1393140 1394300 . + . ID=gene1366;Name=SH04_RS06845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06845;old_locus_tag=SH04_06835 NZ_CP010443.1 Protein Homology CDS 1393140 1394300 . + 0 ID=cds1321;Parent=gene1366;Dbxref=Genbank:WP_000183907.1;Name=WP_000183907.1;Note=catalyzes the transfer of an amino moiety%3B preference for methionine followed by histidine and phenylalanine;gbkey=CDS;product=methionine aminotransferase;protein_id=WP_000183907.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1394301 1394918 . - . ID=gene1367;Name=SH04_RS06850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06850;old_locus_tag=SH04_06840 NZ_CP010443.1 Protein Homology CDS 1394301 1394918 . - 0 ID=cds1322;Parent=gene1367;Dbxref=Genbank:WP_001187469.1;Name=WP_001187469.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001187469.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1394903 1396123 . - . ID=gene1368;Name=SH04_RS06855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06855;old_locus_tag=SH04_06845 NZ_CP010443.1 Protein Homology CDS 1394903 1396123 . - 0 ID=cds1323;Parent=gene1368;Dbxref=Genbank:WP_000029814.1;Name=WP_000029814.1;gbkey=CDS;product=PAPS reductase-like domain protein;protein_id=WP_000029814.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1396270 1397172 . - . ID=gene1369;Name=SH04_RS06860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06860;old_locus_tag=SH04_06850 NZ_CP010443.1 Protein Homology CDS 1396270 1397172 . - 0 ID=cds1324;Parent=gene1369;Dbxref=Genbank:WP_000002474.1;Name=WP_000002474.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000002474.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1397381 1398127 . - . ID=gene1370;Name=dsbG;gbkey=Gene;gene=dsbG;gene_biotype=protein_coding;locus_tag=SH04_RS06865;old_locus_tag=SH04_06855 NZ_CP010443.1 Protein Homology CDS 1397381 1398127 . - 0 ID=cds1325;Parent=gene1370;Dbxref=Genbank:WP_000913829.1;Name=WP_000913829.1;Note=Involved in disulfide bond formation;gbkey=CDS;gene=dsbG;product=thiol:disulfide interchange protein DsbG;protein_id=WP_000913829.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1398499 1399062 . + . ID=gene1371;Name=SH04_RS06870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06870;old_locus_tag=SH04_06860 NZ_CP010443.1 Protein Homology CDS 1398499 1399062 . + 0 ID=cds1326;Parent=gene1371;Dbxref=Genbank:WP_000052796.1;Name=WP_000052796.1;Note=with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols%3B AhpC reduced the hydroperoxide substrate;gbkey=CDS;product=alkyl hydroperoxide reductase subunit C;protein_id=WP_000052796.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1399307 1400872 . + . ID=gene1372;Name=SH04_RS06875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06875;old_locus_tag=SH04_06865 NZ_CP010443.1 Protein Homology CDS 1399307 1400872 . + 0 ID=cds1327;Parent=gene1372;Dbxref=Genbank:WP_000887629.1;Name=WP_000887629.1;gbkey=CDS;product=alkyl hydroperoxide reductase subunit F;protein_id=WP_000887629.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1400993 1401421 . - . ID=gene1373;Name=SH04_RS06880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06880;old_locus_tag=SH04_06870 NZ_CP010443.1 Protein Homology CDS 1400993 1401421 . - 0 ID=cds1328;Parent=gene1373;Dbxref=Genbank:WP_000278509.1;Name=WP_000278509.1;Note=interacts with GroEL%3B is induced by starvation%2C heat shock and toxic agents;gbkey=CDS;product=universal stress protein G;protein_id=WP_000278509.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1401642 1402880 . + . ID=gene1374;Name=SH04_RS06885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06885;old_locus_tag=SH04_06875 NZ_CP010443.1 Protein Homology CDS 1401642 1402880 . + 0 ID=cds1329;Parent=gene1374;Dbxref=Genbank:WP_000646173.1;Name=WP_000646173.1;gbkey=CDS;product=Zn-dependent NAD(P)-binding oxidoreductase;protein_id=WP_000646173.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1402884 1403072 . - . ID=gene1375;Name=SH04_RS06890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06890 NZ_CP010443.1 Protein Homology CDS 1402884 1403072 . - 0 ID=cds1330;Parent=gene1375;Dbxref=Genbank:WP_001301130.1;Name=WP_001301130.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001301130.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1403111 1403521 . - . ID=gene1376;Name=SH04_RS06895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06895;old_locus_tag=SH04_06885 NZ_CP010443.1 Protein Homology CDS 1403111 1403521 . - 0 ID=cds1331;Parent=gene1376;Dbxref=Genbank:WP_000089731.1;Name=WP_000089731.1;Note=Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis%2C CTP for lipid synthesis%2C and GTP for protein elongation;gbkey=CDS;product=nucleoside diphosphate kinase regulator;protein_id=WP_000089731.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1403751 1404557 . - . ID=gene1377;Name=SH04_RS06900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06900;old_locus_tag=SH04_06890 NZ_CP010443.1 Protein Homology CDS 1403751 1404557 . - 0 ID=cds1332;Parent=gene1377;Dbxref=Genbank:WP_000643397.1;Name=WP_000643397.1;gbkey=CDS;product=ribonuclease I;protein_id=WP_000643397.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1404671 1406134 . - . ID=gene1378;Name=SH04_RS06905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06905;old_locus_tag=SH04_06895 NZ_CP010443.1 Protein Homology CDS 1404671 1406134 . - 0 ID=cds1333;Parent=gene1378;Dbxref=Genbank:WP_000050323.1;Name=WP_000050323.1;Note=involved in the transport of citrate into the cell along with the export of succinate out of the cell;gbkey=CDS;product=citrate carrier;protein_id=WP_000050323.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1406185 1407063 . - . ID=gene1379;Name=citG;gbkey=Gene;gene=citG;gene_biotype=protein_coding;locus_tag=SH04_RS06910;old_locus_tag=SH04_06900 NZ_CP010443.1 Protein Homology CDS 1406185 1407063 . - 0 ID=cds1334;Parent=gene1379;Dbxref=Genbank:WP_000062457.1;Name=WP_000062457.1;Note=catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA;gbkey=CDS;gene=citG;product=2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase;protein_id=WP_000062457.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1407038 1407589 . - . ID=gene1380;Name=citX;gbkey=Gene;gene=citX;gene_biotype=protein_coding;locus_tag=SH04_RS06915;old_locus_tag=SH04_06905 NZ_CP010443.1 Protein Homology CDS 1407038 1407589 . - 0 ID=cds1335;Parent=gene1380;Dbxref=Genbank:WP_000550422.1;Name=WP_000550422.1;Note=2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase%3B holo-citrate lyase synthase%3B CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate;gbkey=CDS;gene=citX;product=apo-citrate lyase phosphoribosyl-dephospho-CoA transferase;protein_id=WP_000550422.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1407593 1409125 . - . ID=gene1381;Name=SH04_RS06920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06920;old_locus_tag=SH04_06910 NZ_CP010443.1 Protein Homology CDS 1407593 1409125 . - 0 ID=cds1336;Parent=gene1381;Dbxref=Genbank:WP_000192242.1;Name=WP_000192242.1;Note=citrate-ACP transferase%2C the alpha subunit catalyzes the formation of (3S)-citryl-CoA from acetyl-CoA and citrate;gbkey=CDS;product=citrate lyase alpha chain;protein_id=WP_000192242.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1409136 1410044 . - . ID=gene1382;Name=SH04_RS06925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06925;old_locus_tag=SH04_06915 NZ_CP010443.1 Protein Homology CDS 1409136 1410044 . - 0 ID=cds1337;Parent=gene1382;Dbxref=Genbank:WP_000622357.1;Name=WP_000622357.1;Note=citryl-ACP lyase%3B catalyzes the formation of acetate and oxaloacetate from citrate;gbkey=CDS;product=citrate lyase subunit beta;protein_id=WP_000622357.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1410041 1410337 . - . ID=gene1383;Name=SH04_RS06930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06930;old_locus_tag=SH04_06920 NZ_CP010443.1 Protein Homology CDS 1410041 1410337 . - 0 ID=cds1338;Parent=gene1383;Dbxref=Genbank:WP_000700703.1;Name=WP_000700703.1;gbkey=CDS;product=citrate lyase ACP;protein_id=WP_000700703.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1410352 1411410 . - . ID=gene1384;Name=SH04_RS06935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06935;old_locus_tag=SH04_06925 NZ_CP010443.1 Protein Homology CDS 1410352 1411410 . - 0 ID=cds1339;Parent=gene1384;Dbxref=Genbank:WP_000467705.1;Name=WP_000467705.1;Note=activates citrate lyase by acetylation of the gamma subunit;gbkey=CDS;product=[Citrate [pro-3S]-lyase] ligase;protein_id=WP_000467705.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1411789 1413447 . + . ID=gene1385;Name=dpiB;gbkey=Gene;gene=dpiB;gene_biotype=protein_coding;gene_synonym=citA;locus_tag=SH04_RS06940;old_locus_tag=SH04_06930 NZ_CP010443.1 Protein Homology CDS 1411789 1413447 . + 0 ID=cds1340;Parent=gene1385;Dbxref=Genbank:WP_000939767.1;Name=WP_000939767.1;Note=regulates the expression of citrate fermentation genes;gbkey=CDS;gene=dpiB;product=sensor histidine kinase;protein_id=WP_000939767.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1413416 1414096 . + . ID=gene1386;Name=dpiA;gbkey=Gene;gene=dpiA;gene_biotype=protein_coding;gene_synonym=citB;locus_tag=SH04_RS06945;old_locus_tag=SH04_06935 NZ_CP010443.1 Protein Homology CDS 1413416 1414096 . + 0 ID=cds1341;Parent=gene1386;Dbxref=Genbank:WP_000126500.1;Name=WP_000126500.1;Note=regulates the expression of citrate fermentation genes;gbkey=CDS;gene=dpiA;product=transcriptional regulator;protein_id=WP_000126500.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1414137 1415522 . - . ID=gene1387;Name=dcuC;gbkey=Gene;gene=dcuC;gene_biotype=protein_coding;locus_tag=SH04_RS06950;old_locus_tag=SH04_06940 NZ_CP010443.1 Protein Homology CDS 1414137 1415522 . - 0 ID=cds1342;Parent=gene1387;Dbxref=Genbank:WP_000955063.1;Name=WP_000955063.1;Note=responsible for the transport of C4-dicarboxylates during anaerobic growth;gbkey=CDS;gene=dcuC;product=anaerobic C4-dicarboxylate transporter DcuC;protein_id=WP_000955063.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1416111 1416671 . + . ID=gene1388;Name=pagP;gbkey=Gene;gene=pagP;gene_biotype=protein_coding;locus_tag=SH04_RS06955;old_locus_tag=SH04_06945 NZ_CP010443.1 Protein Homology CDS 1416111 1416671 . + 0 ID=cds1343;Parent=gene1388;Dbxref=Genbank:WP_001103094.1;Name=WP_001103094.1;Note=catalyzes the transfer of palmitate to lipid A;gbkey=CDS;gene=pagP;product=lipid A palmitoyltransferase PagP;protein_id=WP_001103094.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1416846 1417055 . + . ID=gene1389;Name=SH04_RS06960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06960;old_locus_tag=SH04_06950 NZ_CP010443.1 Protein Homology CDS 1416846 1417055 . + 0 ID=cds1344;Parent=gene1389;Dbxref=Genbank:WP_000034825.1;Name=WP_000034825.1;gbkey=CDS;product=cold-shock protein CspE;protein_id=WP_000034825.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1417109 1417492 . - . ID=gene1390;Name=SH04_RS06965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06965;old_locus_tag=SH04_06955 NZ_CP010443.1 Protein Homology CDS 1417109 1417492 . - 0 ID=cds1345;Parent=gene1390;Dbxref=Genbank:WP_000939747.1;Name=WP_000939747.1;Note=camphor resistance protein CrcB%3B may be involved in chromosome condensation%3B overexpression in Escherichia coli protects against decondensation by camphor%3B overexpressing the protein results in an increase in supercoiling;gbkey=CDS;product=fluoride efflux channel%2C dual topology membrane protein;protein_id=WP_000939747.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1417585 1418372 . + . ID=gene1391;Name=SH04_RS06970;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS06970;pseudo=true NZ_CP010443.1 Protein Homology CDS 1417585 1418372 . + 0 ID=cds1346;Parent=gene1391;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hydrolase;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 1418501 1418704 . + . ID=gene1392;Name=tatE;gbkey=Gene;gene=tatE;gene_biotype=protein_coding;locus_tag=SH04_RS06975;old_locus_tag=SH04_06965 NZ_CP010443.1 Protein Homology CDS 1418501 1418704 . + 0 ID=cds1347;Parent=gene1392;Dbxref=Genbank:WP_000503931.1;Name=WP_000503931.1;Note=TatE%3B similar to TatA and found in some proteobacteria%3B part of system that translocates proteins with a conserved twin arginine motif across the inner membrane%3B capable of translocating folded substrates typically those with bound cofactors%3B similar to a protein import system in thylakoid membranes;gbkey=CDS;gene=tatE;product=preprotein translocase subunit TatE;protein_id=WP_000503931.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1418805 1419770 . - . ID=gene1393;Name=SH04_RS06980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06980;old_locus_tag=SH04_06970 NZ_CP010443.1 Protein Homology CDS 1418805 1419770 . - 0 ID=cds1348;Parent=gene1393;Dbxref=Genbank:WP_000042632.1;Name=WP_000042632.1;Note=catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group;gbkey=CDS;product=lipoyl synthase;protein_id=WP_000042632.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1419979 1420932 . - . ID=gene1394;Name=SH04_RS06985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06985;old_locus_tag=SH04_06975 NZ_CP010443.1 Protein Homology CDS 1419979 1420932 . - 0 ID=cds1349;Parent=gene1394;Dbxref=Genbank:WP_000378026.1;Name=WP_000378026.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000378026.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1420990 1421139 . + . ID=gene1395;Name=SH04_RS06990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06990;old_locus_tag=SH04_06980 NZ_CP010443.1 Protein Homology CDS 1420990 1421139 . + 0 ID=cds1350;Parent=gene1395;Dbxref=Genbank:WP_000073523.1;Name=WP_000073523.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000073523.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1421191 1421832 . - . ID=gene1396;Name=SH04_RS06995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS06995;old_locus_tag=SH04_06985 NZ_CP010443.1 Protein Homology CDS 1421191 1421832 . - 0 ID=cds1351;Parent=gene1396;Dbxref=Genbank:WP_000284027.1;Name=WP_000284027.1;Note=lipoyl/octanoyltransferase%3B catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein;gbkey=CDS;product=octanoyltransferase;protein_id=WP_000284027.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1421933 1422196 . - . ID=gene1397;Name=SH04_RS07000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07000;old_locus_tag=SH04_06990 NZ_CP010443.1 Protein Homology CDS 1421933 1422196 . - 0 ID=cds1352;Parent=gene1397;Dbxref=Genbank:WP_000850550.1;Name=WP_000850550.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000850550.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1422306 1423517 . - . ID=gene1398;Name=SH04_RS07005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07005;old_locus_tag=SH04_06995 NZ_CP010443.1 Protein Homology CDS 1422306 1423517 . - 0 ID=cds1353;Parent=gene1398;Dbxref=Genbank:WP_001092082.1;Name=WP_001092082.1;Note=penicillin-binding protein 5%3B removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors;gbkey=CDS;product=D-alanyl-D-alanine carboxypeptidase;protein_id=WP_001092082.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1423656 1424744 . - . ID=gene1399;Name=SH04_RS07010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07010;old_locus_tag=SH04_07000 NZ_CP010443.1 Protein Homology CDS 1423656 1424744 . - 0 ID=cds1354;Parent=gene1399;Dbxref=Genbank:WP_001231430.1;Name=WP_001231430.1;Note=septal ring protein%2C suppressor of prc%2C minor lipoprotein;gbkey=CDS;product=hypothetical protein;protein_id=WP_001231430.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1424755 1425867 . - . ID=gene1400;Name=SH04_RS07015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07015;old_locus_tag=SH04_07005 NZ_CP010443.1 Protein Homology CDS 1424755 1425867 . - 0 ID=cds1355;Parent=gene1400;Dbxref=Genbank:WP_000131719.1;Name=WP_000131719.1;gbkey=CDS;product=rod shape-determining protein RodA;protein_id=WP_000131719.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1425870 1427771 . - . ID=gene1401;Name=SH04_RS07020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07020;old_locus_tag=SH04_07010 NZ_CP010443.1 Protein Homology CDS 1425870 1427771 . - 0 ID=cds1356;Parent=gene1401;Dbxref=Genbank:WP_000776191.1;Name=WP_000776191.1;gbkey=CDS;product=penicillin-binding protein 2;protein_id=WP_000776191.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1427802 1428269 . - . ID=gene1402;Name=SH04_RS07025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07025;old_locus_tag=SH04_07015 NZ_CP010443.1 Protein Homology CDS 1427802 1428269 . - 0 ID=cds1357;Parent=gene1402;Dbxref=Genbank:WP_000776104.1;Name=WP_000776104.1;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase H;protein_id=WP_000776104.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1428273 1428590 . - . ID=gene1403;Name=SH04_RS07030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07030;old_locus_tag=SH04_07020 NZ_CP010443.1 Protein Homology CDS 1428273 1428590 . - 0 ID=cds1358;Parent=gene1403;Dbxref=Genbank:WP_001161664.1;Name=WP_001161664.1;gbkey=CDS;product=ribosome silencing factor RsfS;protein_id=WP_001161664.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1428850 1429461 . - . ID=gene1404;Name=SH04_RS07035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07035;old_locus_tag=SH04_07025 NZ_CP010443.1 Protein Homology CDS 1428850 1429461 . - 0 ID=cds1359;Parent=gene1404;Dbxref=Genbank:WP_001241872.1;Name=WP_001241872.1;gbkey=CDS;product=adenosylcobalamin/alpha-ribazole phosphatase;protein_id=WP_001241872.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1429485 1430126 . - . ID=gene1405;Name=SH04_RS07040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07040;old_locus_tag=SH04_07030 NZ_CP010443.1 Protein Homology CDS 1429485 1430126 . - 0 ID=cds1360;Parent=gene1405;Dbxref=Genbank:WP_000838889.1;Name=WP_000838889.1;gbkey=CDS;product=nicotinate-nucleotide adenylyltransferase;protein_id=WP_000838889.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1430128 1431159 . - . ID=gene1406;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=SH04_RS07045;old_locus_tag=SH04_07035 NZ_CP010443.1 Protein Homology CDS 1430128 1431159 . - 0 ID=cds1361;Parent=gene1406;Dbxref=Genbank:WP_000620535.1;Name=WP_000620535.1;Note=required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA;gbkey=CDS;gene=holA;product=DNA polymerase III subunit delta;protein_id=WP_000620535.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1431159 1431740 . - . ID=gene1407;Name=SH04_RS07050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07050;old_locus_tag=SH04_07040 NZ_CP010443.1 Protein Homology CDS 1431159 1431740 . - 0 ID=cds1362;Parent=gene1407;Dbxref=Genbank:WP_001269673.1;Name=WP_001269673.1;Note=rare lipoprotein B%3B involved in the assembly of LPS in the outer membrane;gbkey=CDS;product=hypothetical protein;protein_id=WP_001269673.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1431755 1434337 . - . ID=gene1408;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=SH04_RS07055;old_locus_tag=SH04_07045 NZ_CP010443.1 Protein Homology CDS 1431755 1434337 . - 0 ID=cds1363;Parent=gene1408;Dbxref=Genbank:WP_001340834.1;Name=WP_001340834.1;Note=leucine--tRNA ligase%3B LeuRS%3B class-I aminoacyl-tRNA synthetase%3B charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA%3B due to the large number of codons that tRNA(Leu) recognizes%2C the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA%2C but instead recognition is dependent on a conserved discriminator base A37 and a long arm%3B an editing domain hydrolyzes misformed products%3B in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase;gbkey=CDS;gene=leuS;product=leucine--tRNA ligase;protein_id=WP_001340834.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1434572 1435054 . + . ID=gene1409;Name=SH04_RS07060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07060;old_locus_tag=SH04_07050 NZ_CP010443.1 Protein Homology CDS 1434572 1435054 . + 0 ID=cds1364;Parent=gene1409;Dbxref=Genbank:WP_001044880.1;Name=WP_001044880.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001044880.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1435124 1436101 . - . ID=gene1410;Name=SH04_RS07065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07065;old_locus_tag=SH04_07055 NZ_CP010443.1 Protein Homology CDS 1435124 1436101 . - 0 ID=cds1365;Parent=gene1410;Dbxref=Genbank:WP_000578178.1;Name=WP_000578178.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000578178.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1436265 1436972 . + . ID=gene1411;Name=SH04_RS07070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07070;old_locus_tag=SH04_07060 NZ_CP010443.1 Protein Homology CDS 1436265 1436972 . + 0 ID=cds1366;Parent=gene1411;Dbxref=Genbank:WP_000367023.1;Name=WP_000367023.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000367023.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1436969 1438396 . + . ID=gene1412;Name=SH04_RS07075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07075;old_locus_tag=SH04_07065 NZ_CP010443.1 Protein Homology CDS 1436969 1438396 . + 0 ID=cds1367;Parent=gene1412;Dbxref=Genbank:WP_000786572.1;Name=WP_000786572.1;gbkey=CDS;product=HscC co-chaperone%2C uncharacterized J domain-containing protein;protein_id=WP_000786572.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1438406 1438960 . - . ID=gene1413;Name=SH04_RS07080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07080;old_locus_tag=SH04_07070 NZ_CP010443.1 Protein Homology CDS 1438406 1438960 . - 0 ID=cds1368;Parent=gene1413;Dbxref=Genbank:WP_001035674.1;Name=WP_001035674.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001035674.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1439062 1439769 . + . ID=gene1414;Name=SH04_RS07085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07085;old_locus_tag=SH04_07075 NZ_CP010443.1 Protein Homology CDS 1439062 1439769 . + 0 ID=cds1369;Parent=gene1414;Dbxref=Genbank:WP_001030934.1;Name=WP_001030934.1;gbkey=CDS;product=DUF1266 domain-containing protein;protein_id=WP_001030934.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1439766 1441217 . + . ID=gene1415;Name=SH04_RS07090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07090;old_locus_tag=SH04_07080 NZ_CP010443.1 Protein Homology CDS 1439766 1441217 . + 0 ID=cds1370;Parent=gene1415;Dbxref=Genbank:WP_001300403.1;Name=WP_001300403.1;gbkey=CDS;product=J domain-containing HscC co-chaperone%3B Hsc56;protein_id=WP_001300403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1441277 1442947 . - . ID=gene1416;Name=SH04_RS07095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07095;old_locus_tag=SH04_07085 NZ_CP010443.1 Protein Homology CDS 1441277 1442947 . - 0 ID=cds1371;Parent=gene1416;Dbxref=Genbank:WP_000367875.1;Name=WP_000367875.1;gbkey=CDS;product=chaperone protein HscC;protein_id=WP_000367875.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1443031 1443966 . - . ID=gene1417;Name=rihA;gbkey=Gene;gene=rihA;gene_biotype=protein_coding;locus_tag=SH04_RS07100;old_locus_tag=SH04_07090 NZ_CP010443.1 Protein Homology CDS 1443031 1443966 . - 0 ID=cds1372;Parent=gene1417;Dbxref=Genbank:WP_001207520.1;Name=WP_001207520.1;Note=Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil%2C respectively%3B pyrimidine-specific;gbkey=CDS;gene=rihA;product=pyrimidine-specific ribonucleoside hydrolase RihA;protein_id=WP_001207520.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1444084 1444809 . - . ID=gene1418;Name=artP;gbkey=Gene;gene=artP;gene_biotype=protein_coding;locus_tag=SH04_RS07105;old_locus_tag=SH04_07095 NZ_CP010443.1 Protein Homology CDS 1444084 1444809 . - 0 ID=cds1373;Parent=gene1418;Dbxref=Genbank:WP_000631384.1;Name=WP_000631384.1;Note=With ArtMQJI transports arginine across the inner membrane;gbkey=CDS;gene=artP;product=glutamate/aspartate transport ATP-binding protein GltL;protein_id=WP_000631384.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1444809 1445483 . - . ID=gene1419;Name=SH04_RS07110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07110;old_locus_tag=SH04_07100 NZ_CP010443.1 Protein Homology CDS 1444809 1445483 . - 0 ID=cds1374;Parent=gene1419;Dbxref=Genbank:WP_000272824.1;Name=WP_000272824.1;Note=with GltJLPS and GadC for glutamate and GltJLP%2C DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate;gbkey=CDS;product=glutamate ABC transporter permease;protein_id=WP_000272824.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1445483 1446223 . - . ID=gene1420;Name=SH04_RS07115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07115;old_locus_tag=SH04_07105 NZ_CP010443.1 Protein Homology CDS 1445483 1446223 . - 0 ID=cds1375;Parent=gene1420;Dbxref=Genbank:WP_000020941.1;Name=WP_000020941.1;Note=with GltIKL is involved in the transport of glutamate and aspartate;gbkey=CDS;product=glutamate ABC transporter permease;protein_id=WP_000020941.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1446393 1447301 . - . ID=gene1421;Name=SH04_RS07120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07120;old_locus_tag=SH04_07110 NZ_CP010443.1 Protein Homology CDS 1446393 1447301 . - 0 ID=cds1376;Parent=gene1421;Dbxref=Genbank:WP_001177086.1;Name=WP_001177086.1;gbkey=CDS;product=glutamate/aspartate periplasmic-binding protein;protein_id=WP_001177086.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1447398 1448605 . + . ID=id90;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1447551 1448531 . - . ID=gene1422;Name=SH04_RS07125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07125;old_locus_tag=SH04_07115 NZ_CP010443.1 Protein Homology CDS 1447551 1448531 . - 0 ID=cds1377;Parent=gene1422;Dbxref=Genbank:WP_000019403.1;Name=WP_000019403.1;gbkey=CDS;product=transposase;protein_id=WP_000019403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1448897 1450435 . - . ID=gene1423;Name=lnt;gbkey=Gene;gene=lnt;gene_biotype=protein_coding;locus_tag=SH04_RS07130;old_locus_tag=SH04_07120 NZ_CP010443.1 Protein Homology CDS 1448897 1450435 . - 0 ID=cds1378;Parent=gene1423;Dbxref=Genbank:WP_000853021.1;Name=WP_000853021.1;Note=Transfers the fatty acyl group on membrane lipoproteins;gbkey=CDS;gene=lnt;product=apolipoprotein N-acyltransferase;protein_id=WP_000853021.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1450460 1451338 . - . ID=gene1424;Name=SH04_RS07135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07135;old_locus_tag=SH04_07125 NZ_CP010443.1 Protein Homology CDS 1450460 1451338 . - 0 ID=cds1379;Parent=gene1424;Dbxref=Genbank:WP_001278605.1;Name=WP_001278605.1;Note=involved in the transport of magnesium and cobalt ions;gbkey=CDS;product=magnesium and cobalt efflux protein CorC;protein_id=WP_001278605.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1451428 1451895 . - . ID=gene1425;Name=SH04_RS07140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07140;old_locus_tag=SH04_07130 NZ_CP010443.1 Protein Homology CDS 1451428 1451895 . - 0 ID=cds1380;Parent=gene1425;Dbxref=Genbank:WP_000084469.1;Name=WP_000084469.1;gbkey=CDS;product=endoribonuclease YbeY;protein_id=WP_000084469.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1451892 1452932 . - . ID=gene1426;Name=SH04_RS07145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07145;old_locus_tag=SH04_07135 NZ_CP010443.1 Protein Homology CDS 1451892 1452932 . - 0 ID=cds1381;Parent=gene1426;Dbxref=Genbank:WP_001018040.1;Name=WP_001018040.1;gbkey=CDS;product=phoH-like protein;protein_id=WP_001018040.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1453085 1454509 . - . ID=gene1427;Name=SH04_RS07150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07150;old_locus_tag=SH04_07140 NZ_CP010443.1 Protein Homology CDS 1453085 1454509 . - 0 ID=cds1382;Parent=gene1427;Dbxref=Genbank:WP_000162740.1;Name=WP_000162740.1;Note=catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A);gbkey=CDS;product=tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase;protein_id=WP_000162740.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1454655 1455830 . + . ID=gene1428;Name=ubiF;gbkey=Gene;gene=ubiF;gene_biotype=protein_coding;gene_synonym=yleB;locus_tag=SH04_RS07155;old_locus_tag=SH04_07145 NZ_CP010443.1 Protein Homology CDS 1454655 1455830 . + 0 ID=cds1383;Parent=gene1428;Dbxref=Genbank:WP_000184541.1;Name=WP_000184541.1;Note=catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1%2C4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol%3B functions in the biosynthesis of ubiquinone or coenzyme Q;gbkey=CDS;gene=ubiF;product=2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase;protein_id=WP_000184541.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1455984 1456058 . - . ID=gene1429;Name=SH04_RS07160;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS07160;old_locus_tag=SH04_07150 NZ_CP010443.1 tRNAscan-SE tRNA 1455984 1456058 . - . ID=rna45;Parent=gene1429;anticodon=(pos:complement(1456024..1456026));gbkey=tRNA;product=tRNA-Gln NZ_CP010443.1 tRNAscan-SE exon 1455984 1456058 . - . ID=id91;Parent=rna45;anticodon=(pos:complement(1456024..1456026));gbkey=tRNA;product=tRNA-Gln NZ_CP010443.1 RefSeq gene 1456096 1456170 . - . ID=gene1430;Name=SH04_RS07165;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS07165;old_locus_tag=SH04_07155 NZ_CP010443.1 tRNAscan-SE tRNA 1456096 1456170 . - . ID=rna46;Parent=gene1430;anticodon=(pos:complement(1456136..1456138));gbkey=tRNA;product=tRNA-Gln NZ_CP010443.1 tRNAscan-SE exon 1456096 1456170 . - . ID=id92;Parent=rna46;anticodon=(pos:complement(1456136..1456138));gbkey=tRNA;product=tRNA-Gln NZ_CP010443.1 RefSeq gene 1456218 1456294 . - . ID=gene1431;Name=SH04_RS07170;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS07170;old_locus_tag=SH04_07160 NZ_CP010443.1 tRNAscan-SE tRNA 1456218 1456294 . - . ID=rna47;Parent=gene1431;anticodon=(pos:complement(1456258..1456260));gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 tRNAscan-SE exon 1456218 1456294 . - . ID=id93;Parent=rna47;anticodon=(pos:complement(1456258..1456260));gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 RefSeq gene 1456310 1456384 . - . ID=gene1432;Name=SH04_RS07175;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS07175;old_locus_tag=SH04_07165 NZ_CP010443.1 tRNAscan-SE tRNA 1456310 1456384 . - . ID=rna48;Parent=gene1432;anticodon=(pos:complement(1456350..1456352));gbkey=tRNA;product=tRNA-Gln NZ_CP010443.1 tRNAscan-SE exon 1456310 1456384 . - . ID=id94;Parent=rna48;anticodon=(pos:complement(1456350..1456352));gbkey=tRNA;product=tRNA-Gln NZ_CP010443.1 RefSeq gene 1456419 1456493 . - . ID=gene1433;Name=SH04_RS07180;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS07180;old_locus_tag=SH04_07170 NZ_CP010443.1 tRNAscan-SE tRNA 1456419 1456493 . - . ID=rna49;Parent=gene1433;anticodon=(pos:complement(1456459..1456461));gbkey=tRNA;product=tRNA-Gln NZ_CP010443.1 tRNAscan-SE exon 1456419 1456493 . - . ID=id95;Parent=rna49;anticodon=(pos:complement(1456459..1456461));gbkey=tRNA;product=tRNA-Gln NZ_CP010443.1 RefSeq gene 1456517 1456601 . - . ID=gene1434;Name=SH04_RS07185;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS07185;old_locus_tag=SH04_07175 NZ_CP010443.1 tRNAscan-SE tRNA 1456517 1456601 . - . ID=rna50;Parent=gene1434;anticodon=(pos:complement(1456565..1456567));gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 tRNAscan-SE exon 1456517 1456601 . - . ID=id96;Parent=rna50;anticodon=(pos:complement(1456565..1456567));gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 RefSeq gene 1456611 1456687 . - . ID=gene1435;Name=SH04_RS07190;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS07190;old_locus_tag=SH04_07180 NZ_CP010443.1 tRNAscan-SE tRNA 1456611 1456687 . - . ID=rna51;Parent=gene1435;anticodon=(pos:complement(1456651..1456653));gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 tRNAscan-SE exon 1456611 1456687 . - . ID=id97;Parent=rna51;anticodon=(pos:complement(1456651..1456653));gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 RefSeq gene 1457067 1458731 . - . ID=gene1436;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;locus_tag=SH04_RS07195;old_locus_tag=SH04_07185 NZ_CP010443.1 Protein Homology CDS 1457067 1458731 . - 0 ID=cds1384;Parent=gene1436;Dbxref=Genbank:WP_000337077.1;Name=WP_000337077.1;Note=functions in asparagine biosynthesis%3B converts glutamine%2C aspartate%2C ATP%2C and water to glutamate%2C asparagine%2C pyrophosphate and AMP;gbkey=CDS;gene=asnB;product=asparagine synthetase B [glutamine-hydrolyzing];protein_id=WP_000337077.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1459128 1459880 . - . ID=gene1437;Name=SH04_RS07200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07200;old_locus_tag=SH04_07190 NZ_CP010443.1 Protein Homology CDS 1459128 1459880 . - 0 ID=cds1385;Parent=gene1437;Dbxref=Genbank:WP_000153136.1;Name=WP_000153136.1;gbkey=CDS;product=UMP phosphatase;protein_id=WP_000153136.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1459928 1461148 . - . ID=gene1438;Name=SH04_RS07205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07205;old_locus_tag=SH04_07195 NZ_CP010443.1 Protein Homology CDS 1459928 1461148 . - 0 ID=cds1386;Parent=gene1438;Dbxref=Genbank:WP_000187594.1;Name=WP_000187594.1;Note=regulates the synthesis of glucosamine and N-acetylglucosamine by acting as a repressor of the nagEBACD operon and both a repressor and activator of the glmSU operon;gbkey=CDS;product=N-acetylglucosamine repressor;protein_id=WP_000187594.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1461157 1462305 . - . ID=gene1439;Name=nagA;gbkey=Gene;gene=nagA;gene_biotype=protein_coding;locus_tag=SH04_RS07210;old_locus_tag=SH04_07200 NZ_CP010443.1 Protein Homology CDS 1461157 1462305 . - 0 ID=cds1387;Parent=gene1439;Dbxref=Genbank:WP_000271153.1;Name=WP_000271153.1;Note=catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate;gbkey=CDS;gene=nagA;product=N-acetylglucosamine-6-phosphate deacetylase;protein_id=WP_000271153.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1462365 1463165 . - . ID=gene1440;Name=nagB;gbkey=Gene;gene=nagB;gene_biotype=protein_coding;locus_tag=SH04_RS07215;old_locus_tag=SH04_07205 NZ_CP010443.1 Protein Homology CDS 1462365 1463165 . - 0 ID=cds1388;Parent=gene1440;Dbxref=Genbank:WP_001237072.1;Name=WP_001237072.1;Note=catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate;gbkey=CDS;gene=nagB;product=glucosamine-6-phosphate deaminase;protein_id=WP_001237072.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1463498 1465444 . + . ID=gene1441;Name=SH04_RS07220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07220;old_locus_tag=SH04_07210 NZ_CP010443.1 Protein Homology CDS 1463498 1465444 . + 0 ID=cds1389;Parent=gene1441;Dbxref=Genbank:WP_001023093.1;Name=WP_001023093.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS N-acetylglucosamine EIICBA component;protein_id=WP_001023093.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1465647 1467311 . + . ID=gene1442;Name=SH04_RS07225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07225;old_locus_tag=SH04_07215 NZ_CP010443.1 Protein Homology CDS 1465647 1467311 . + 0 ID=cds1390;Parent=gene1442;Dbxref=Genbank:WP_001287154.1;Name=WP_001287154.1;Note=catalyzes a two-step reaction%2C first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA;gbkey=CDS;product=glutamine--tRNA ligase;protein_id=WP_001287154.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1467386 1467489 . + . ID=id98;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1467888 1469294 . + . ID=gene1443;Name=chiP;gbkey=Gene;gene=chiP;gene_biotype=protein_coding;locus_tag=SH04_RS07230;old_locus_tag=SH04_07220 NZ_CP010443.1 Protein Homology CDS 1467888 1469294 . + 0 ID=cds1391;Parent=gene1443;Dbxref=Genbank:WP_001258819.1;Name=WP_001258819.1;Note=outer membrane porin involved in the transport of chitooligosaccharides;gbkey=CDS;gene=chiP;product=chitoporin;protein_id=WP_001258819.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1469344 1469670 . + . ID=gene1444;Name=SH04_RS07235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07235;old_locus_tag=SH04_07225 NZ_CP010443.1 Protein Homology CDS 1469344 1469670 . + 0 ID=cds1392;Parent=gene1444;Dbxref=Genbank:WP_000733579.1;Name=WP_000733579.1;gbkey=CDS;product=chitosugar-induced verified lipoprotein;protein_id=WP_000733579.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1469754 1470200 . - . ID=gene1445;Name=fur;gbkey=Gene;gene=fur;gene_biotype=protein_coding;locus_tag=SH04_RS07240;old_locus_tag=SH04_07230 NZ_CP010443.1 Protein Homology CDS 1469754 1470200 . - 0 ID=cds1393;Parent=gene1445;Dbxref=Genbank:WP_000131702.1;Name=WP_000131702.1;Note=negatively regulates a number of operons that encode enzymes involved in iron transport%3B activated by manganese%3B forms a homodimer;gbkey=CDS;gene=fur;product=ferric uptake regulation protein;protein_id=WP_000131702.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1470193 1470279 . - . ID=gene1446;Name=SH04_RS07245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07245;old_locus_tag=SH04_07235 NZ_CP010443.1 Protein Homology CDS 1470193 1470279 . - 0 ID=cds1394;Parent=gene1446;Dbxref=Genbank:WP_001406816.1;Name=WP_001406816.1;gbkey=CDS;product=Fur leader peptide;protein_id=WP_001406816.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1470245 1470499 . + . ID=gene1447;Name=SH04_RS07250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07250;old_locus_tag=SH04_07240 NZ_CP010443.1 Protein Homology CDS 1470245 1470499 . + 0 ID=cds1395;Parent=gene1447;Dbxref=Genbank:WP_001323354.1;Name=WP_001323354.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001323354.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1470489 1471019 . - . ID=gene1448;Name=SH04_RS07255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07255;old_locus_tag=SH04_07245 NZ_CP010443.1 Protein Homology CDS 1470489 1471019 . - 0 ID=cds1396;Parent=gene1448;Dbxref=Genbank:WP_001018618.1;Name=WP_001018618.1;Note=An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group;gbkey=CDS;product=flavodoxin-1;protein_id=WP_001018618.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1471159 1471452 . - . ID=gene1449;Name=SH04_RS07260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07260;old_locus_tag=SH04_07250 NZ_CP010443.1 Protein Homology CDS 1471159 1471452 . - 0 ID=cds1397;Parent=gene1449;Dbxref=Genbank:WP_001300829.1;Name=WP_001300829.1;gbkey=CDS;product=LexA-regulated protein%2C CopB family;protein_id=WP_001300829.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1471592 1472356 . - . ID=gene1450;Name=SH04_RS07265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07265;old_locus_tag=SH04_07255 NZ_CP010443.1 Protein Homology CDS 1471592 1472356 . - 0 ID=cds1398;Parent=gene1450;Dbxref=Genbank:WP_000773288.1;Name=WP_000773288.1;gbkey=CDS;product=esterase;protein_id=WP_000773288.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1472541 1473086 . + . ID=gene1451;Name=SH04_RS07270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07270;old_locus_tag=SH04_07260 NZ_CP010443.1 Protein Homology CDS 1472541 1473086 . + 0 ID=cds1399;Parent=gene1451;Dbxref=Genbank:WP_000848387.1;Name=WP_000848387.1;Note=negative modulator of the initiation of chromosome replication;gbkey=CDS;product=negative modulator of initiation of replication;protein_id=WP_000848387.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1473112 1474752 . + . ID=gene1452;Name=SH04_RS07275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07275;old_locus_tag=SH04_07265 NZ_CP010443.1 Protein Homology CDS 1473112 1474752 . + 0 ID=cds1400;Parent=gene1452;Dbxref=Genbank:WP_001297249.1;Name=WP_001297249.1;Note=catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate;gbkey=CDS;product=phosphoglucomutase;protein_id=WP_001297249.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1474966 1475460 . + . ID=gene1453;Name=SH04_RS07280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07280;old_locus_tag=SH04_07270 NZ_CP010443.1 Protein Homology CDS 1474966 1475460 . + 0 ID=cds1401;Parent=gene1453;Dbxref=Genbank:WP_000856353.1;Name=WP_000856353.1;gbkey=CDS;product=lipoprotein;protein_id=WP_000856353.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1475501 1476151 . - . ID=gene1454;Name=SH04_RS07285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS07285;pseudo=true NZ_CP010443.1 Protein Homology CDS 1475501 1476151 . - 0 ID=cds1402;Parent=gene1454;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(1475942..1475944)%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 1476275 1476472 . - . ID=gene1455;Name=SH04_RS07290;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS07290;pseudo=true NZ_CP010443.1 Protein Homology CDS 1476275 1476472 . - 0 ID=cds1403;Parent=gene1455;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(1476410..1476412)%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 1476500 1477819 . - . ID=gene1456;Name=potE;gbkey=Gene;gene=potE;gene_biotype=protein_coding;locus_tag=SH04_RS07295;old_locus_tag=SH04_07285 NZ_CP010443.1 Protein Homology CDS 1476500 1477819 . - 0 ID=cds1404;Parent=gene1456;Dbxref=Genbank:WP_000075845.1;Name=WP_000075845.1;Note=catalyzes the uptake of putrescine via a proton symport mechanism%2C as well as the efflux of putrescine by a putrescine/ornithine antiport system;gbkey=CDS;gene=potE;product=putrescine-ornithine antiporter;protein_id=WP_000075845.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1477816 1480014 . - . ID=gene1457;Name=SH04_RS07300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07300;old_locus_tag=SH04_07290 NZ_CP010443.1 Protein Homology CDS 1477816 1480014 . - 0 ID=cds1405;Parent=gene1457;Dbxref=Genbank:WP_000040195.1;Name=WP_000040195.1;gbkey=CDS;product=ornithine decarboxylase;protein_id=WP_000040195.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1480137 1480394 . + . ID=gene1458;Name=SH04_RS07305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07305;old_locus_tag=SH04_07295 NZ_CP010443.1 Protein Homology CDS 1480137 1480394 . + 0 ID=cds1406;Parent=gene1458;Dbxref=Genbank:WP_001171592.1;Name=WP_001171592.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001171592.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1480610 1481287 . - . ID=gene1459;Name=SH04_RS07310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07310;old_locus_tag=SH04_07300 NZ_CP010443.1 Protein Homology CDS 1480610 1481287 . - 0 ID=cds1407;Parent=gene1459;Dbxref=Genbank:WP_000186076.1;Name=WP_000186076.1;Note=response regulator in two-component regulatory system with KdpD%3B regulates the kdp operon involved in potassium transport;gbkey=CDS;product=two-component system response regulator;protein_id=WP_000186076.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1481284 1483968 . - . ID=gene1460;Name=SH04_RS07315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07315;old_locus_tag=SH04_07305 NZ_CP010443.1 Protein Homology CDS 1481284 1483968 . - 0 ID=cds1408;Parent=gene1460;Dbxref=Genbank:WP_001310640.1;Name=WP_001310640.1;Note=sensory histidine kinase in two-component regulatory system with KdpE%3B signal sensing protein;gbkey=CDS;product=two-component system sensor histidine kinase KdpD;protein_id=WP_001310640.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1483961 1484533 . - . ID=gene1461;Name=SH04_RS07320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07320;old_locus_tag=SH04_07310 NZ_CP010443.1 Protein Homology CDS 1483961 1484533 . - 0 ID=cds1409;Parent=gene1461;Dbxref=Genbank:WP_001300431.1;Name=WP_001300431.1;Note=One of the components of the high-affinity ATP-driven potassium transport (or KDP)system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex;gbkey=CDS;product=potassium-transporting ATPase C chain;protein_id=WP_001300431.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1484542 1486590 . - . ID=gene1462;Name=SH04_RS07325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07325;old_locus_tag=SH04_07315 NZ_CP010443.1 Protein Homology CDS 1484542 1486590 . - 0 ID=cds1410;Parent=gene1462;Dbxref=Genbank:WP_000087939.1;Name=WP_000087939.1;Note=One of the components of the high-affinity ATP-driven potassium transport (or KDP) system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions;gbkey=CDS;product=potassium-transporting ATPase B chain;protein_id=WP_000087939.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1486613 1488286 . - . ID=gene1463;Name=SH04_RS07330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07330;old_locus_tag=SH04_07320 NZ_CP010443.1 Protein Homology CDS 1486613 1488286 . - 0 ID=cds1411;Parent=gene1463;Dbxref=Genbank:WP_000741129.1;Name=WP_000741129.1;Note=catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions;gbkey=CDS;product=potassium-transporting ATPase A chain;protein_id=WP_000741129.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1488286 1488375 . - . ID=gene1464;Name=kdpF;gbkey=Gene;gene=kdpF;gene_biotype=protein_coding;locus_tag=SH04_RS07335;old_locus_tag=SH04_07325 NZ_CP010443.1 Protein Homology CDS 1488286 1488375 . - 0 ID=cds1412;Parent=gene1464;Dbxref=Genbank:WP_001272653.1;Name=WP_001272653.1;Note=one of the components of the high-affinity ATP-driven potassium transport (or KDP) system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions;gbkey=CDS;gene=kdpF;product=protein KdpF;protein_id=WP_001272653.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1488688 1488894 . + . ID=gene1465;Name=SH04_RS07340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07340;old_locus_tag=SH04_07330 NZ_CP010443.1 Protein Homology CDS 1488688 1488894 . + 0 ID=cds1413;Parent=gene1465;Dbxref=Genbank:WP_000424924.1;Name=WP_000424924.1;gbkey=CDS;product=DUF2517 domain-containing protein;protein_id=WP_000424924.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1489053 1491358 . + . ID=id99;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1489137 1493330 . + . ID=gene1466;Name=SH04_RS07345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07345;old_locus_tag=SH04_07335 NZ_CP010443.1 Protein Homology CDS 1489137 1493330 . + 0 ID=cds1414;Parent=gene1466;Dbxref=Genbank:WP_000015200.1;Name=WP_000015200.1;gbkey=CDS;product=RHS element protein;protein_id=WP_000015200.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1491401 1492850 . + . ID=id100;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1493330 1493656 . + . ID=gene1467;Name=SH04_RS07350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07350;old_locus_tag=SH04_07340 NZ_CP010443.1 Protein Homology CDS 1493330 1493656 . + 0 ID=cds1415;Parent=gene1467;Dbxref=Genbank:WP_000873944.1;Name=WP_000873944.1;gbkey=CDS;product=membrane protein;protein_id=WP_000873944.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1493702 1494723 . + . ID=id101;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1493774 1495207 . + . ID=gene1468;Name=SH04_RS07355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07355;old_locus_tag=SH04_07345 NZ_CP010443.1 Protein Homology CDS 1493774 1495207 . + 0 ID=cds1416;Parent=gene1468;Dbxref=Genbank:WP_000267514.1;Name=WP_000267514.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000267514.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1495204 1495773 . + . ID=gene1469;Name=SH04_RS07360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07360;old_locus_tag=SH04_07350 NZ_CP010443.1 Protein Homology CDS 1495204 1495773 . + 0 ID=cds1417;Parent=gene1469;Dbxref=Genbank:WP_000832338.1;Name=WP_000832338.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000832338.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1495999 1496253 . + . ID=gene1470;Name=SH04_RS07365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07365;old_locus_tag=SH04_07355 NZ_CP010443.1 Protein Homology CDS 1495999 1496253 . + 0 ID=cds1418;Parent=gene1470;Dbxref=Genbank:WP_000421001.1;Name=WP_000421001.1;gbkey=CDS;product=transposase;protein_id=WP_000421001.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1496261 1497519 . + . ID=id102;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1496472 1497515 . + . ID=gene1471;Name=SH04_RS07370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07370;old_locus_tag=SH04_07360 NZ_CP010443.1 Protein Homology CDS 1496472 1497515 . + 0 ID=cds1419;Parent=gene1471;Dbxref=Genbank:WP_032265581.1;Name=WP_032265581.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032265581.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1497526 1498414 . + . ID=id103;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1497646 1498407 . + . ID=gene1472;Name=SH04_RS07375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07375;old_locus_tag=SH04_07365 NZ_CP010443.1 Protein Homology CDS 1497646 1498407 . + 0 ID=cds1420;Parent=gene1472;Dbxref=Genbank:WP_000420862.1;Name=WP_000420862.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000420862.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1498555 1499064 . + . ID=gene1473;Name=SH04_RS07380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07380;old_locus_tag=SH04_07370 NZ_CP010443.1 Protein Homology CDS 1498555 1499064 . + 0 ID=cds1421;Parent=gene1473;Dbxref=Genbank:WP_001053305.1;Name=WP_001053305.1;gbkey=CDS;product=DUF1722 domain-containing protein;protein_id=WP_001053305.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1499061 1500479 . + . ID=gene1474;Name=SH04_RS07385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07385;old_locus_tag=SH04_07375 NZ_CP010443.1 Protein Homology CDS 1499061 1500479 . + 0 ID=cds1422;Parent=gene1474;Dbxref=Genbank:WP_000207142.1;Name=WP_000207142.1;Note=UV-induced DNA repair%3B converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers%3B light dependent;gbkey=CDS;product=deoxyribodipyrimidine photolyase;protein_id=WP_000207142.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1500629 1502110 . - . ID=gene1475;Name=SH04_RS07390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07390;old_locus_tag=SH04_07380 NZ_CP010443.1 Protein Homology CDS 1500629 1502110 . - 0 ID=cds1423;Parent=gene1475;Dbxref=Genbank:WP_001032689.1;Name=WP_001032689.1;gbkey=CDS;product=dipeptide permease D;protein_id=WP_001032689.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1502381 1503124 . + . ID=gene1476;Name=SH04_RS07395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07395;old_locus_tag=SH04_07385 NZ_CP010443.1 Protein Homology CDS 1502381 1503124 . + 0 ID=cds1424;Parent=gene1476;Dbxref=Genbank:WP_000798871.1;Name=WP_000798871.1;gbkey=CDS;product=Nif3-like dinuclear metal center hexameric protein;protein_id=WP_000798871.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1503147 1503803 . + . ID=gene1477;Name=SH04_RS07400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07400;old_locus_tag=SH04_07390 NZ_CP010443.1 Protein Homology CDS 1503147 1503803 . + 0 ID=cds1425;Parent=gene1477;Dbxref=Genbank:WP_001188343.1;Name=WP_001188343.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001188343.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1503797 1504729 . + . ID=gene1478;Name=SH04_RS07405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07405;old_locus_tag=SH04_07395 NZ_CP010443.1 Protein Homology CDS 1503797 1504729 . + 0 ID=cds1426;Parent=gene1478;Dbxref=Genbank:WP_000912724.1;Name=WP_000912724.1;gbkey=CDS;product=allophanate hydrolase;protein_id=WP_000912724.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1504719 1505453 . + . ID=gene1479;Name=SH04_RS07410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07410;old_locus_tag=SH04_07400 NZ_CP010443.1 Protein Homology CDS 1504719 1505453 . + 0 ID=cds1427;Parent=gene1479;Dbxref=Genbank:WP_000687112.1;Name=WP_000687112.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000687112.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1505489 1506280 . + . ID=gene1480;Name=SH04_RS07415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07415;old_locus_tag=SH04_07405 NZ_CP010443.1 Protein Homology CDS 1505489 1506280 . + 0 ID=cds1428;Parent=gene1480;Dbxref=Genbank:WP_001113989.1;Name=WP_001113989.1;Note=5-formyluracil/5-hydroxymethyluracil DNA glycosylase%3B involved in base excision repair of DNA damaged by oxidation or by mutagenic agents%3B acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines%3B has apurinic/apyrimidinic lyase activity;gbkey=CDS;product=endonuclease VII;protein_id=WP_001113989.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1506277 1507323 . - . ID=gene1481;Name=SH04_RS07420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07420;old_locus_tag=SH04_07410 NZ_CP010443.1 Protein Homology CDS 1506277 1507323 . - 0 ID=cds1429;Parent=gene1481;Dbxref=Genbank:WP_001336221.1;Name=WP_001336221.1;gbkey=CDS;product=protein AbrB;protein_id=WP_001336221.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1507475 1508536 . - . ID=gene1482;Name=SH04_RS07425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07425;old_locus_tag=SH04_07415 NZ_CP010443.1 Protein Homology CDS 1507475 1508536 . - 0 ID=cds1430;Parent=gene1482;Dbxref=Genbank:WP_001272410.1;Name=WP_001272410.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_001272410.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1508533 1509261 . - . ID=gene1483;Name=SH04_RS07430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07430;old_locus_tag=SH04_07420 NZ_CP010443.1 Protein Homology CDS 1508533 1509261 . - 0 ID=cds1431;Parent=gene1483;Dbxref=Genbank:WP_000142799.1;Name=WP_000142799.1;gbkey=CDS;product=periplasmic pilin chaperone;protein_id=WP_000142799.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1509276 1511723 . - . ID=gene1484;Name=SH04_RS07435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07435;old_locus_tag=SH04_07425 NZ_CP010443.1 Protein Homology CDS 1509276 1511723 . - 0 ID=cds1432;Parent=gene1484;Dbxref=Genbank:WP_001350492.1;Name=WP_001350492.1;gbkey=CDS;product=outer membrane protein;protein_id=WP_001350492.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1511783 1512349 . - . ID=gene1485;Name=SH04_RS07440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07440;old_locus_tag=SH04_07430 NZ_CP010443.1 Protein Homology CDS 1511783 1512349 . - 0 ID=cds1433;Parent=gene1485;Dbxref=Genbank:WP_000472412.1;Name=WP_000472412.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_000472412.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1512739 1514022 . - . ID=gene1486;Name=gltA;gbkey=Gene;gene=gltA;gene_biotype=protein_coding;locus_tag=SH04_RS07445;old_locus_tag=SH04_07435 NZ_CP010443.1 Protein Homology CDS 1512739 1514022 . - 0 ID=cds1434;Parent=gene1486;Dbxref=Genbank:WP_000785834.1;Name=WP_000785834.1;Note=type II enzyme%3B in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate%3B allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation%3B forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A%3B functions in TCA cycle%2C glyoxylate cycle and respiration%3B enzyme from Helicobacter pylori is not inhibited by NADH;gbkey=CDS;gene=gltA;product=citrate synthase;protein_id=WP_000785834.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1514010 1514195 . + . ID=gene1487;Name=SH04_RS07450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07450;old_locus_tag=SH04_07440 NZ_CP010443.1 Protein Homology CDS 1514010 1514195 . + 0 ID=cds1435;Parent=gene1487;Dbxref=Genbank:WP_001336219.1;Name=WP_001336219.1;gbkey=CDS;product=citrate synthase;protein_id=WP_001336219.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1514716 1515120 . + . ID=gene1488;Name=sdhC;gbkey=Gene;gene=sdhC;gene_biotype=protein_coding;locus_tag=SH04_RS07455;old_locus_tag=SH04_07445 NZ_CP010443.1 Protein Homology CDS 1514716 1515120 . + 0 ID=cds1436;Parent=gene1488;Dbxref=Genbank:WP_000263347.1;Name=WP_000263347.1;gbkey=CDS;gene=sdhC;product=succinate dehydrogenase cytochrome b556 large membrane subunit;protein_id=WP_000263347.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1515114 1515461 . + . ID=gene1489;Name=sdhD;gbkey=Gene;gene=sdhD;gene_biotype=protein_coding;locus_tag=SH04_RS07460;old_locus_tag=SH04_07450 NZ_CP010443.1 Protein Homology CDS 1515114 1515461 . + 0 ID=cds1437;Parent=gene1489;Dbxref=Genbank:WP_000254365.1;Name=WP_000254365.1;gbkey=CDS;gene=sdhD;product=succinate dehydrogenase hydrophobic membrane anchor subunit;protein_id=WP_000254365.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1515461 1517227 . + . ID=gene1490;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;locus_tag=SH04_RS07465;old_locus_tag=SH04_07455 NZ_CP010443.1 Protein Homology CDS 1515461 1517227 . + 0 ID=cds1438;Parent=gene1490;Dbxref=Genbank:WP_000775540.1;Name=WP_000775540.1;Note=part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol;gbkey=CDS;gene=sdhA;product=succinate dehydrogenase flavoprotein subunit;protein_id=WP_000775540.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1517243 1517959 . + . ID=gene1491;Name=sdhB;gbkey=Gene;gene=sdhB;gene_biotype=protein_coding;locus_tag=SH04_RS07470;old_locus_tag=SH04_07460 NZ_CP010443.1 Protein Homology CDS 1517243 1517959 . + 0 ID=cds1439;Parent=gene1491;Dbxref=Genbank:WP_001235254.1;Name=WP_001235254.1;Note=part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol%3B the catalytic subunits are similar to fumarate reductase;gbkey=CDS;gene=sdhB;product=succinate dehydrogenase iron-sulfur subunit;protein_id=WP_001235254.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1518018 1518278 . + . ID=gene1492;Name=SH04_RS07475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07475;old_locus_tag=SH04_07465 NZ_CP010443.1 Protein Homology CDS 1518018 1518278 . + 0 ID=cds1440;Parent=gene1492;Dbxref=Genbank:WP_001303843.1;Name=WP_001303843.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303843.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1518260 1521061 . + . ID=gene1493;Name=SH04_RS07480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07480;old_locus_tag=SH04_07470 NZ_CP010443.1 Protein Homology CDS 1518260 1521061 . + 0 ID=cds1441;Parent=gene1493;Dbxref=Genbank:WP_001181473.1;Name=WP_001181473.1;gbkey=CDS;product=2-oxoglutarate dehydrogenase E1 component;protein_id=WP_001181473.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1521076 1522293 . + . ID=gene1494;Name=SH04_RS07485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07485;old_locus_tag=SH04_07475 NZ_CP010443.1 Protein Homology CDS 1521076 1522293 . + 0 ID=cds1442;Parent=gene1494;Dbxref=Genbank:WP_000099823.1;Name=WP_000099823.1;Note=component of 2-oxoglutarate dehydrogenase complex%3B catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA;gbkey=CDS;product=dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex;protein_id=WP_000099823.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1522568 1523734 . + . ID=gene1495;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=SH04_RS07490;old_locus_tag=SH04_07480 NZ_CP010443.1 Protein Homology CDS 1522568 1523734 . + 0 ID=cds1443;Parent=gene1495;Dbxref=Genbank:WP_001048602.1;Name=WP_001048602.1;Note=catalyzes the interconversion of succinyl-CoA and succinate;gbkey=CDS;gene=sucC;product=succinyl-CoA ligase subunit beta;protein_id=WP_001048602.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1523734 1524603 . + . ID=gene1496;Name=SH04_RS07495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07495;old_locus_tag=SH04_07485 NZ_CP010443.1 Protein Homology CDS 1523734 1524603 . + 0 ID=cds1444;Parent=gene1496;Dbxref=Genbank:WP_000025458.1;Name=WP_000025458.1;Note=Catalyzes the only substrate-level phosphorylation in the TCA cycle;gbkey=CDS;product=succinyl-CoA ligase subunit alpha;protein_id=WP_000025458.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1524707 1525429 . - . ID=gene1497;Name=SH04_RS07500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07500;old_locus_tag=SH04_07490 NZ_CP010443.1 Protein Homology CDS 1524707 1525429 . - 0 ID=cds1445;Parent=gene1497;Dbxref=Genbank:WP_000509902.1;Name=WP_000509902.1;Note=regulates the succiny-lCoA synthetase operon;gbkey=CDS;product=mannosyl-D-glycerate transport/metabolism system repressor MngR;protein_id=WP_000509902.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1525598 1527514 . + . ID=gene1498;Name=SH04_RS07505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07505;old_locus_tag=SH04_07495 NZ_CP010443.1 Protein Homology CDS 1525598 1527514 . + 0 ID=cds1446;Parent=gene1498;Dbxref=Genbank:WP_001054864.1;Name=WP_001054864.1;Note=involved in the phosphorylation and transport of sugars across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=PTS 2-O-a-mannosyl-D-glycerate transporter subunit IIABC;protein_id=WP_001054864.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1527532 1530165 . + . ID=gene1499;Name=SH04_RS07510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07510;old_locus_tag=SH04_07500 NZ_CP010443.1 Protein Homology CDS 1527532 1530165 . + 0 ID=cds1447;Parent=gene1499;Dbxref=Genbank:WP_000648976.1;Name=WP_000648976.1;gbkey=CDS;product=mannosylglycerate hydrolase;protein_id=WP_000648976.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1530190 1530417 . + . ID=gene1500;Name=SH04_RS07515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07515;old_locus_tag=SH04_07505 NZ_CP010443.1 Protein Homology CDS 1530190 1530417 . + 0 ID=cds1448;Parent=gene1500;Dbxref=Genbank:WP_001324497.1;Name=WP_001324497.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001324497.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1531012 1532580 . + . ID=gene1501;Name=SH04_RS07520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07520;old_locus_tag=SH04_07510 NZ_CP010443.1 Protein Homology CDS 1531012 1532580 . + 0 ID=cds1449;Parent=gene1501;Dbxref=Genbank:WP_000884361.1;Name=WP_000884361.1;Note=part of the aerobic respiratory chain%3B catalyzes the ubiquinol to ubiquinone;gbkey=CDS;product=cytochrome bd-I ubiquinol oxidase subunit 1;protein_id=WP_000884361.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1532596 1533735 . + . ID=gene1502;Name=SH04_RS07525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07525;old_locus_tag=SH04_07515 NZ_CP010443.1 Protein Homology CDS 1532596 1533735 . + 0 ID=cds1450;Parent=gene1502;Dbxref=Genbank:WP_000568275.1;Name=WP_000568275.1;gbkey=CDS;product=cytochrome bd-I ubiquinol oxidase subunit 2;protein_id=WP_000568275.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1533750 1533863 . + . ID=gene1503;Name=SH04_RS07530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07530;old_locus_tag=SH04_07520 NZ_CP010443.1 Protein Homology CDS 1533750 1533863 . + 0 ID=cds1451;Parent=gene1503;Dbxref=Genbank:WP_000270282.1;Name=WP_000270282.1;gbkey=CDS;product=cytochrome bd-I ubiquinol oxidase subunit X;protein_id=WP_000270282.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1533863 1534156 . + . ID=gene1504;Name=SH04_RS07535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07535;old_locus_tag=SH04_07525 NZ_CP010443.1 Protein Homology CDS 1533863 1534156 . + 0 ID=cds1452;Parent=gene1504;Dbxref=Genbank:WP_000034602.1;Name=WP_000034602.1;gbkey=CDS;product=cyd operon protein YbgE;protein_id=WP_000034602.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1534306 1534710 . + . ID=gene1505;Name=SH04_RS07540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07540;old_locus_tag=SH04_07530 NZ_CP010443.1 Protein Homology CDS 1534306 1534710 . + 0 ID=cds1453;Parent=gene1505;Dbxref=Genbank:WP_001098384.1;Name=WP_001098384.1;Note=catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters%3B physiological role remains unknown%3B involved in phospholipid metabolism%3B part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components;gbkey=CDS;product=acyl-CoA thioester hydrolase YbgC;protein_id=WP_001098384.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1534716 1535399 . + . ID=gene1506;Name=SH04_RS07545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07545;old_locus_tag=SH04_07535 NZ_CP010443.1 Protein Homology CDS 1534716 1535399 . + 0 ID=cds1454;Parent=gene1506;Dbxref=Genbank:WP_001307062.1;Name=WP_001307062.1;Note=membrane spanning protein in TolA-TolQ-TolR complex%3B involved in the tonB-independent uptake of group A colicins;gbkey=CDS;product=colicin transporter;protein_id=WP_001307062.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1535403 1535831 . + . ID=gene1507;Name=SH04_RS07550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07550;old_locus_tag=SH04_07540 NZ_CP010443.1 Protein Homology CDS 1535403 1535831 . + 0 ID=cds1455;Parent=gene1507;Dbxref=Genbank:WP_000090097.1;Name=WP_000090097.1;Note=membrane spanning protein in TolA-TolQ-TolR complex%3B involved in the tonB-independent uptake of group A colicins;gbkey=CDS;product=protein TolR;protein_id=WP_000090097.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1535896 1537161 . + . ID=gene1508;Name=tolA;gbkey=Gene;gene=tolA;gene_biotype=protein_coding;locus_tag=SH04_RS07555;old_locus_tag=SH04_07545 NZ_CP010443.1 Protein Homology CDS 1535896 1537161 . + 0 ID=cds1456;Parent=gene1508;Dbxref=Genbank:WP_000030637.1;Name=WP_000030637.1;Note=inner membrane component of 7 member Tol-Pal envelope-spanning complex%3B involved in maintaining cell envelope integrity%3B utilized by colicins and filamentous phages for import%3B interacts with TolB%2C Pal%2C and through TolB to various outer membrane porins;gbkey=CDS;gene=tolA;product=cell envelope integrity/translocation protein TolA;protein_id=WP_000030637.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1537294 1538586 . + . ID=gene1509;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=SH04_RS07560;old_locus_tag=SH04_07550 NZ_CP010443.1 Protein Homology CDS 1537294 1538586 . + 0 ID=cds1457;Parent=gene1509;Dbxref=Genbank:WP_001295307.1;Name=WP_001295307.1;Note=forms dimers%3B may be involved in cell envelope integrity%3B interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA;gbkey=CDS;gene=tolB;product=protein TolB;protein_id=WP_001295307.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1538621 1539142 . + . ID=gene1510;Name=SH04_RS07565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07565;old_locus_tag=SH04_07555 NZ_CP010443.1 Protein Homology CDS 1538621 1539142 . + 0 ID=cds1458;Parent=gene1510;Dbxref=Genbank:WP_001295306.1;Name=WP_001295306.1;gbkey=CDS;product=peptidoglycan-associated lipoprotein;protein_id=WP_001295306.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1539152 1539943 . + . ID=gene1511;Name=SH04_RS07570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07570;old_locus_tag=SH04_07560 NZ_CP010443.1 Protein Homology CDS 1539152 1539943 . + 0 ID=cds1459;Parent=gene1511;Dbxref=Genbank:WP_000097571.1;Name=WP_000097571.1;Note=periplasmic protein that interacts with TolA%3B the tol-pal system is probably involved in maintaining cell envelope integrity;gbkey=CDS;product=periplasmic TolA-binding protein;protein_id=WP_000097571.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1540108 1540183 . + . ID=gene1512;Name=SH04_RS07575;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS07575;old_locus_tag=SH04_07565 NZ_CP010443.1 tRNAscan-SE tRNA 1540108 1540183 . + . ID=rna52;Parent=gene1512;anticodon=(pos:1540141..1540143);gbkey=tRNA;product=tRNA-Lys NZ_CP010443.1 tRNAscan-SE exon 1540108 1540183 . + . ID=id104;Parent=rna52;anticodon=(pos:1540141..1540143);gbkey=tRNA;product=tRNA-Lys NZ_CP010443.1 RefSeq repeat_region 1540297 1540570 . + . ID=id105;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1540319 1540394 . + . ID=gene1513;Name=SH04_RS07580;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS07580;old_locus_tag=SH04_07570 NZ_CP010443.1 tRNAscan-SE tRNA 1540319 1540394 . + . ID=rna53;Parent=gene1513;anticodon=(pos:1540352..1540354);gbkey=tRNA;product=tRNA-Val NZ_CP010443.1 tRNAscan-SE exon 1540319 1540394 . + . ID=id106;Parent=rna53;anticodon=(pos:1540352..1540354);gbkey=tRNA;product=tRNA-Val NZ_CP010443.1 RefSeq gene 1540397 1540472 . + . ID=gene1514;Name=SH04_RS07585;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS07585;old_locus_tag=SH04_07575 NZ_CP010443.1 tRNAscan-SE tRNA 1540397 1540472 . + . ID=rna54;Parent=gene1514;anticodon=(pos:1540430..1540432);gbkey=tRNA;product=tRNA-Lys NZ_CP010443.1 tRNAscan-SE exon 1540397 1540472 . + . ID=id107;Parent=rna54;anticodon=(pos:1540430..1540432);gbkey=tRNA;product=tRNA-Lys NZ_CP010443.1 RefSeq repeat_region 1540600 1540874 . + . ID=id108;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1540622 1540697 . + . ID=gene1515;Name=SH04_RS07590;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS07590;old_locus_tag=SH04_07580 NZ_CP010443.1 tRNAscan-SE tRNA 1540622 1540697 . + . ID=rna55;Parent=gene1515;anticodon=(pos:1540655..1540657);gbkey=tRNA;product=tRNA-Val NZ_CP010443.1 tRNAscan-SE exon 1540622 1540697 . + . ID=id109;Parent=rna55;anticodon=(pos:1540655..1540657);gbkey=tRNA;product=tRNA-Val NZ_CP010443.1 RefSeq gene 1540701 1540776 . + . ID=gene1516;Name=SH04_RS07595;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS07595;old_locus_tag=SH04_07585 NZ_CP010443.1 tRNAscan-SE tRNA 1540701 1540776 . + . ID=rna56;Parent=gene1516;anticodon=(pos:1540734..1540736);gbkey=tRNA;product=tRNA-Lys NZ_CP010443.1 tRNAscan-SE exon 1540701 1540776 . + . ID=id110;Parent=rna56;anticodon=(pos:1540734..1540736);gbkey=tRNA;product=tRNA-Lys NZ_CP010443.1 RefSeq gene 1540923 1540998 . + . ID=gene1517;Name=SH04_RS07600;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS07600;old_locus_tag=SH04_07590 NZ_CP010443.1 tRNAscan-SE tRNA 1540923 1540998 . + . ID=rna57;Parent=gene1517;anticodon=(pos:1540956..1540958);gbkey=tRNA;product=tRNA-Lys NZ_CP010443.1 tRNAscan-SE exon 1540923 1540998 . + . ID=id111;Parent=rna57;anticodon=(pos:1540956..1540958);gbkey=tRNA;product=tRNA-Lys NZ_CP010443.1 RefSeq repeat_region 1541131 1541398 . + . ID=id112;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1541131 1541206 . + . ID=gene1518;Name=SH04_RS07605;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS07605;old_locus_tag=SH04_07595 NZ_CP010443.1 tRNAscan-SE tRNA 1541131 1541206 . + . ID=rna58;Parent=gene1518;anticodon=(pos:1541164..1541166);gbkey=tRNA;product=tRNA-Lys NZ_CP010443.1 tRNAscan-SE exon 1541131 1541206 . + . ID=id113;Parent=rna58;anticodon=(pos:1541164..1541166);gbkey=tRNA;product=tRNA-Lys NZ_CP010443.1 RefSeq gene 1541639 1542682 . + . ID=gene1519;Name=SH04_RS07610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07610;old_locus_tag=SH04_07600 NZ_CP010443.1 Protein Homology CDS 1541639 1542682 . + 0 ID=cds1460;Parent=gene1519;Dbxref=Genbank:WP_000115290.1;Name=WP_000115290.1;Note=3 different subfamilies%3B catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate;gbkey=CDS;product=quinolinate synthase A;protein_id=WP_000115290.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1542720 1543439 . + . ID=gene1520;Name=SH04_RS07615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07615;old_locus_tag=SH04_07605 NZ_CP010443.1 Protein Homology CDS 1542720 1543439 . + 0 ID=cds1461;Parent=gene1520;Dbxref=Genbank:WP_000345410.1;Name=WP_000345410.1;Note=involved in nicotinamide riboside transport;gbkey=CDS;product=nicotinamide riboside transporter PnuC;protein_id=WP_000345410.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1543436 1544377 . - . ID=gene1521;Name=SH04_RS07620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07620;old_locus_tag=SH04_07610 NZ_CP010443.1 Protein Homology CDS 1543436 1544377 . - 0 ID=cds1462;Parent=gene1521;Dbxref=Genbank:WP_000951292.1;Name=WP_000951292.1;Note=involved in zinc efflux across the cytoplasmic membrane;gbkey=CDS;product=zinc transporter ZitB;protein_id=WP_000951292.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1544491 1544871 . - . ID=gene1522;Name=SH04_RS07625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07625;old_locus_tag=SH04_07615 NZ_CP010443.1 Protein Homology CDS 1544491 1544871 . - 0 ID=cds1463;Parent=gene1522;Dbxref=Genbank:WP_000784351.1;Name=WP_000784351.1;gbkey=CDS;product=periplasmic protein;protein_id=WP_000784351.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1544966 1545079 . - . ID=gene1523;Name=SH04_RS07630;end_range=1545079,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS07630;partial=true;pseudo=true NZ_CP010443.1 Protein Homology CDS 1544966 1545079 . - 0 ID=cds1464;Parent=gene1523;end_range=1545079,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=glutamate decarboxylase;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 1545187 1546239 . + . ID=gene1524;Name=SH04_RS07635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07635;old_locus_tag=SH04_07625 NZ_CP010443.1 Protein Homology CDS 1545187 1546239 . + 0 ID=cds1465;Parent=gene1524;Dbxref=Genbank:WP_001109196.1;Name=WP_001109196.1;Note=catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C phenylalanine sensitive;gbkey=CDS;product=phospho-2-dehydro-3-deoxyheptonate aldolase Phe-sensitive;protein_id=WP_001109196.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1546397 1547149 . - . ID=gene1525;Name=gpmA;gbkey=Gene;gene=gpmA;gene_biotype=protein_coding;locus_tag=SH04_RS07640;old_locus_tag=SH04_07630 NZ_CP010443.1 Protein Homology CDS 1546397 1547149 . - 0 ID=cds1466;Parent=gene1525;Dbxref=Genbank:WP_001295305.1;Name=WP_001295305.1;Note=2%2C3-bisphosphoglycerate-dependent%3B catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate;gbkey=CDS;gene=gpmA;product=2%2C3-bisphosphoglycerate-dependent phosphoglycerate mutase;protein_id=WP_001295305.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1547351 1548391 . - . ID=gene1526;Name=galM;gbkey=Gene;gene=galM;gene_biotype=protein_coding;locus_tag=SH04_RS07645;old_locus_tag=SH04_07635 NZ_CP010443.1 Protein Homology CDS 1547351 1548391 . - 0 ID=cds1467;Parent=gene1526;Dbxref=Genbank:WP_000931389.1;Name=WP_000931389.1;Note=mutarotase%3B catalyzes the conversion of beta-galactose to the alpha-anomer%3B links the metabolism of lactose and galactose;gbkey=CDS;gene=galM;product=aldose 1-epimerase;protein_id=WP_000931389.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1548385 1549533 . - . ID=gene1527;Name=SH04_RS07650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07650;old_locus_tag=SH04_07640 NZ_CP010443.1 Protein Homology CDS 1548385 1549533 . - 0 ID=cds1468;Parent=gene1527;Dbxref=Genbank:WP_000053415.1;Name=WP_000053415.1;Note=catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism;gbkey=CDS;product=galactokinase;protein_id=WP_000053415.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1549537 1550583 . - . ID=gene1528;Name=SH04_RS07655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07655;old_locus_tag=SH04_07645 NZ_CP010443.1 Protein Homology CDS 1549537 1550583 . - 0 ID=cds1469;Parent=gene1528;Dbxref=Genbank:WP_000191497.1;Name=WP_000191497.1;Note=catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P;gbkey=CDS;product=galactose-1-phosphate uridylyltransferase;protein_id=WP_000191497.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1550593 1551609 . - . ID=gene1529;Name=SH04_RS07660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07660;old_locus_tag=SH04_07650 NZ_CP010443.1 Protein Homology CDS 1550593 1551609 . - 0 ID=cds1470;Parent=gene1529;Dbxref=Genbank:WP_001265438.1;Name=WP_001265438.1;gbkey=CDS;product=UDP-glucose 4-epimerase;protein_id=WP_001265438.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1551870 1553342 . - . ID=gene1530;Name=SH04_RS07665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07665;old_locus_tag=SH04_07655 NZ_CP010443.1 Protein Homology CDS 1551870 1553342 . - 0 ID=cds1471;Parent=gene1530;Dbxref=Genbank:WP_000096869.1;Name=WP_000096869.1;Note=contains 2 ATP-binding cassettes%3B involved in the transport of molybdenum;gbkey=CDS;product=molybdate ABC transporter ATPase;protein_id=WP_000096869.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1553410 1554198 . - . ID=gene1531;Name=SH04_RS07670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07670;old_locus_tag=SH04_07665 NZ_CP010443.1 Protein Homology CDS 1553410 1554198 . - 0 ID=cds1472;Parent=gene1531;Dbxref=Genbank:WP_001147439.1;Name=WP_001147439.1;Note=represses the modABCD operon and activates the moaABCD and napFDAGHBC operons;gbkey=CDS;product=transcriptional regulator ModE;protein_id=WP_001147439.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1554327 1554476 . + . ID=gene1532;Name=SH04_RS07675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07675;old_locus_tag=SH04_07670 NZ_CP010443.1 Protein Homology CDS 1554327 1554476 . + 0 ID=cds1473;Parent=gene1532;Dbxref=Genbank:WP_000891515.1;Name=WP_000891515.1;gbkey=CDS;product=multidrug efflux pump accessory protein AcrZ;protein_id=WP_000891515.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1554643 1555416 . + . ID=gene1533;Name=modA;gbkey=Gene;gene=modA;gene_biotype=protein_coding;locus_tag=SH04_RS07680;old_locus_tag=SH04_07675 NZ_CP010443.1 Protein Homology CDS 1554643 1555416 . + 0 ID=cds1474;Parent=gene1533;Dbxref=Genbank:WP_000101984.1;Name=WP_000101984.1;Note=with ModCB is involved in the high-affinity transport of molybdate;gbkey=CDS;gene=modA;product=molybdate-binding periplasmic protein;protein_id=WP_000101984.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1555416 1556105 . + . ID=gene1534;Name=modB;gbkey=Gene;gene=modB;gene_biotype=protein_coding;gene_synonym=chlJ;locus_tag=SH04_RS07685;old_locus_tag=SH04_07680 NZ_CP010443.1 Protein Homology CDS 1555416 1556105 . + 0 ID=cds1475;Parent=gene1534;Dbxref=Genbank:WP_000604034.1;Name=WP_000604034.1;Note=part of ModCBA molybdate transporter%3B member of ABC superfamily%3B inner membrane component%3B regulated by repressor protein ModE;gbkey=CDS;gene=modB;product=molybdenum ABC transporter permease;protein_id=WP_000604034.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1556108 1557166 . + . ID=gene1535;Name=modC;gbkey=Gene;gene=modC;gene_biotype=protein_coding;locus_tag=SH04_RS07690;old_locus_tag=SH04_07685 NZ_CP010443.1 Protein Homology CDS 1556108 1557166 . + 0 ID=cds1476;Parent=gene1535;Dbxref=Genbank:WP_000891692.1;Name=WP_000891692.1;Note=Part of the ABC transporter complex modABC involved in molybdenum import;gbkey=CDS;gene=modC;product=molybdenum import ATP-binding protein ModC;protein_id=WP_000891692.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1557167 1557985 . - . ID=gene1536;Name=SH04_RS07695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07695;old_locus_tag=SH04_07690 NZ_CP010443.1 Protein Homology CDS 1557167 1557985 . - 0 ID=cds1477;Parent=gene1536;Dbxref=Genbank:WP_001300666.1;Name=WP_001300666.1;gbkey=CDS;product=pyridoxal phosphate phosphatase YbhA;protein_id=WP_001300666.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1558140 1559135 . + . ID=gene1537;Name=SH04_RS07700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07700;old_locus_tag=SH04_07695 NZ_CP010443.1 Protein Homology CDS 1558140 1559135 . + 0 ID=cds1478;Parent=gene1537;Dbxref=Genbank:WP_000815435.1;Name=WP_000815435.1;Note=catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate;gbkey=CDS;product=6-phosphogluconolactonase;protein_id=WP_000815435.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1559176 1560129 . - . ID=gene1538;Name=SH04_RS07705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07705;old_locus_tag=SH04_07700 NZ_CP010443.1 Protein Homology CDS 1559176 1560129 . - 0 ID=cds1479;Parent=gene1538;Dbxref=Genbank:WP_001350493.1;Name=WP_001350493.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001350493.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1560313 1561365 . + . ID=gene1539;Name=SH04_RS07710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07710;old_locus_tag=SH04_07705 NZ_CP010443.1 Protein Homology CDS 1560313 1561365 . + 0 ID=cds1480;Parent=gene1539;Dbxref=Genbank:WP_000723652.1;Name=WP_000723652.1;gbkey=CDS;product=PrpF family isomerase;protein_id=WP_000723652.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1561441 1562874 . + . ID=gene1540;Name=SH04_RS07715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07715;old_locus_tag=SH04_07710 NZ_CP010443.1 Protein Homology CDS 1561441 1562874 . + 0 ID=cds1481;Parent=gene1540;Dbxref=Genbank:WP_001036475.1;Name=WP_001036475.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001036475.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1562880 1563003 . + . ID=id114;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1563057 1565318 . + . ID=gene1541;Name=SH04_RS07720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07720;old_locus_tag=SH04_07715 NZ_CP010443.1 Protein Homology CDS 1563057 1565318 . + 0 ID=cds1482;Parent=gene1541;Dbxref=Genbank:WP_000593938.1;Name=WP_000593938.1;gbkey=CDS;product=aconitase;protein_id=WP_000593938.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1565552 1566835 . - . ID=gene1542;Name=SH04_RS07725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07725;old_locus_tag=SH04_07720 NZ_CP010443.1 Protein Homology CDS 1565552 1566835 . - 0 ID=cds1483;Parent=gene1542;Dbxref=Genbank:WP_001091569.1;Name=WP_001091569.1;gbkey=CDS;product=acyl-CoA thioesterase;protein_id=WP_001091569.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1566987 1567463 . - . ID=gene1543;Name=SH04_RS07730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07730;old_locus_tag=SH04_07725 NZ_CP010443.1 Protein Homology CDS 1566987 1567463 . - 0 ID=cds1484;Parent=gene1543;Dbxref=Genbank:WP_000767389.1;Name=WP_000767389.1;Note=YbhB%3B similar to rat and human kinase inhibitory proteins;gbkey=CDS;product=kinase inhibitor homolog%2C UPF0098 family;protein_id=WP_000767389.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1567522 1568754 . - . ID=gene1544;Name=SH04_RS07735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07735;old_locus_tag=SH04_07730 NZ_CP010443.1 Protein Homology CDS 1567522 1568754 . - 0 ID=cds1485;Parent=gene1544;Dbxref=Genbank:WP_000203682.1;Name=WP_000203682.1;Note=catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7%2C8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate;gbkey=CDS;product=adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA;protein_id=WP_000203682.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1568898 1569938 . + . ID=gene1545;Name=SH04_RS07740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07740;old_locus_tag=SH04_07735 NZ_CP010443.1 Protein Homology CDS 1568898 1569938 . + 0 ID=cds1486;Parent=gene1545;Dbxref=Genbank:WP_000951213.1;Name=WP_000951213.1;Note=catalyzes the formation of biotin from dethiobiotin;gbkey=CDS;product=biotin synthase;protein_id=WP_000951213.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1569935 1571089 . + . ID=gene1546;Name=SH04_RS07745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07745;old_locus_tag=SH04_07740 NZ_CP010443.1 Protein Homology CDS 1569935 1571089 . + 0 ID=cds1487;Parent=gene1546;Dbxref=Genbank:WP_000118826.1;Name=WP_000118826.1;Note=catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine;gbkey=CDS;product=8-amino-7-oxononanoate synthase;protein_id=WP_000118826.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1571076 1571831 . + . ID=gene1547;Name=SH04_RS07750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07750;old_locus_tag=SH04_07745 NZ_CP010443.1 Protein Homology CDS 1571076 1571831 . + 0 ID=cds1488;Parent=gene1547;Dbxref=Genbank:WP_000246761.1;Name=WP_000246761.1;Note=methyltransferase%3B acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA%2C a biotin precursor%3B member of the bio operon (bioABFCD)%3B in Escherichia coli%2C bioC-null mutants require biotin for growth;gbkey=CDS;product=malonyl-[acyl-carrier protein] O-methyltransferase BioC;protein_id=WP_000246761.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1571824 1572501 . + . ID=gene1548;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=SH04_RS07755;old_locus_tag=SH04_07750 NZ_CP010443.1 Protein Homology CDS 1571824 1572501 . + 0 ID=cds1489;Parent=gene1548;Dbxref=Genbank:WP_000044843.1;Name=WP_000044843.1;Note=DTB synthetase%3B dethiobiotin synthase%3B involved in production of dethiobiotin from ATP and 7%2C8-diaminononanoate and carbon dioxide%3B contains magnesium;gbkey=CDS;gene=bioD;product=ATP-dependent dethiobiotin synthetase BioD 1;protein_id=WP_000044843.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1573080 1575101 . + . ID=gene1549;Name=SH04_RS07760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07760;old_locus_tag=SH04_07755 NZ_CP010443.1 Protein Homology CDS 1573080 1575101 . + 0 ID=cds1490;Parent=gene1549;Dbxref=Genbank:WP_000042533.1;Name=WP_000042533.1;Note=The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands%2C where it probes for the presence of a lesion;gbkey=CDS;product=UvrABC system protein B;protein_id=WP_000042533.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1575293 1576201 . - . ID=gene1550;Name=SH04_RS07765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07765;old_locus_tag=SH04_07760 NZ_CP010443.1 Protein Homology CDS 1575293 1576201 . - 0 ID=cds1491;Parent=gene1550;Dbxref=Genbank:WP_001295302.1;Name=WP_001295302.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295302.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1576444 1576599 . - . ID=gene1551;Name=SH04_RS07770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07770;old_locus_tag=SH04_07765 NZ_CP010443.1 Protein Homology CDS 1576444 1576599 . - 0 ID=cds1492;Parent=gene1551;Dbxref=Genbank:WP_001321721.1;Name=WP_001321721.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001321721.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1576598 1577587 . + . ID=gene1552;Name=moaA;gbkey=Gene;gene=moaA;gene_biotype=protein_coding;locus_tag=SH04_RS07775;old_locus_tag=SH04_07770 NZ_CP010443.1 Protein Homology CDS 1576598 1577587 . + 0 ID=cds1493;Parent=gene1552;Dbxref=Genbank:WP_001350494.1;Name=WP_001350494.1;Note=together with moaC%2C is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z;gbkey=CDS;gene=moaA;product=cyclic pyranopterin monophosphate synthase;protein_id=WP_001350494.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1577609 1578121 . + . ID=gene1553;Name=SH04_RS07780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07780;old_locus_tag=SH04_07775 NZ_CP010443.1 Protein Homology CDS 1577609 1578121 . + 0 ID=cds1494;Parent=gene1553;Dbxref=Genbank:WP_000084639.1;Name=WP_000084639.1;gbkey=CDS;product=molybdenum cofactor biosynthesis protein B;protein_id=WP_000084639.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1578124 1578609 . + . ID=gene1554;Name=moaC;gbkey=Gene;gene=moaC;gene_biotype=protein_coding;locus_tag=SH04_RS07785;old_locus_tag=SH04_07780 NZ_CP010443.1 Protein Homology CDS 1578124 1578609 . + 0 ID=cds1495;Parent=gene1554;Dbxref=Genbank:WP_000080885.1;Name=WP_000080885.1;Note=MoaC%3B along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z%3B involved in molybdenum cofactor biosynthesis;gbkey=CDS;gene=moaC;product=cyclic pyranopterin monophosphate synthase accessory protein;protein_id=WP_000080885.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1578602 1578847 . + . ID=gene1555;Name=moaD;gbkey=Gene;gene=moaD;gene_biotype=protein_coding;locus_tag=SH04_RS07790;old_locus_tag=SH04_07785 NZ_CP010443.1 Protein Homology CDS 1578602 1578847 . + 0 ID=cds1496;Parent=gene1555;Dbxref=Genbank:WP_000598619.1;Name=WP_000598619.1;Note=catalyzes the conversion of molybdopterin precursor Z into molybdopterin;gbkey=CDS;gene=moaD;product=molybdopterin synthase sulfur carrier subunit;protein_id=WP_000598619.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1578849 1579301 . + . ID=gene1556;Name=moaE;gbkey=Gene;gene=moaE;gene_biotype=protein_coding;locus_tag=SH04_RS07795;old_locus_tag=SH04_07790 NZ_CP010443.1 Protein Homology CDS 1578849 1579301 . + 0 ID=cds1497;Parent=gene1556;Dbxref=Genbank:WP_000852296.1;Name=WP_000852296.1;Note=catalyzes the conversion of molybdopterin precursor Z into molybdopterin;gbkey=CDS;gene=moaE;product=molybdopterin synthase catalytic subunit;protein_id=WP_000852296.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1579438 1580142 . + . ID=gene1557;Name=SH04_RS07800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07800;old_locus_tag=SH04_07795 NZ_CP010443.1 Protein Homology CDS 1579438 1580142 . + 0 ID=cds1498;Parent=gene1557;Dbxref=Genbank:WP_000373624.1;Name=WP_000373624.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000373624.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1580347 1581060 . + . ID=gene1558;Name=SH04_RS07805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07805;old_locus_tag=SH04_07800 NZ_CP010443.1 Protein Homology CDS 1580347 1581060 . + 0 ID=cds1499;Parent=gene1558;Dbxref=Genbank:WP_000446911.1;Name=WP_000446911.1;gbkey=CDS;product=Bax protein;protein_id=WP_000446911.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1581096 1582052 . - . ID=gene1559;Name=SH04_RS07810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07810;old_locus_tag=SH04_07805 NZ_CP010443.1 Protein Homology CDS 1581096 1582052 . - 0 ID=cds1500;Parent=gene1559;Dbxref=Genbank:WP_000045450.1;Name=WP_000045450.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000045450.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1582052 1583293 . - . ID=gene1560;Name=SH04_RS07815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07815;old_locus_tag=SH04_07810 NZ_CP010443.1 Protein Homology CDS 1582052 1583293 . - 0 ID=cds1501;Parent=gene1560;Dbxref=Genbank:WP_000650337.1;Name=WP_000650337.1;gbkey=CDS;product=cardiolipin synthase B;protein_id=WP_000650337.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1583290 1584051 . - . ID=gene1561;Name=SH04_RS07820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07820;old_locus_tag=SH04_07815 NZ_CP010443.1 Protein Homology CDS 1583290 1584051 . - 0 ID=cds1502;Parent=gene1561;Dbxref=Genbank:WP_001113348.1;Name=WP_001113348.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001113348.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1584184 1584594 . + . ID=gene1562;Name=SH04_RS07825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07825;old_locus_tag=SH04_07820 NZ_CP010443.1 Protein Homology CDS 1584184 1584594 . + 0 ID=cds1503;Parent=gene1562;Dbxref=Genbank:WP_000871982.1;Name=WP_000871982.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000871982.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1584556 1585662 . - . ID=gene1563;Name=SH04_RS07830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07830;old_locus_tag=SH04_07825 NZ_CP010443.1 Protein Homology CDS 1584556 1585662 . - 0 ID=cds1504;Parent=gene1563;Dbxref=Genbank:WP_000469031.1;Name=WP_000469031.1;gbkey=CDS;product=inner membrane transport permease YbhR;protein_id=WP_000469031.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1585673 1586806 . - . ID=gene1564;Name=SH04_RS07835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07835;old_locus_tag=SH04_07830 NZ_CP010443.1 Protein Homology CDS 1585673 1586806 . - 0 ID=cds1505;Parent=gene1564;Dbxref=Genbank:WP_000070131.1;Name=WP_000070131.1;gbkey=CDS;product=inner membrane transport permease YbhS;protein_id=WP_000070131.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1586799 1588535 . - . ID=gene1565;Name=SH04_RS07840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07840;old_locus_tag=SH04_07835 NZ_CP010443.1 Protein Homology CDS 1586799 1588535 . - 0 ID=cds1506;Parent=gene1565;Dbxref=Genbank:WP_000996107.1;Name=WP_000996107.1;gbkey=CDS;product=ABC transporter ATPase;protein_id=WP_000996107.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1588528 1589523 . - . ID=gene1566;Name=SH04_RS07845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07845;old_locus_tag=SH04_07840 NZ_CP010443.1 Protein Homology CDS 1588528 1589523 . - 0 ID=cds1507;Parent=gene1566;Dbxref=Genbank:WP_001393495.1;Name=WP_001393495.1;gbkey=CDS;product=transporter;protein_id=WP_001393495.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1589526 1590197 . - . ID=gene1567;Name=SH04_RS07850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07850;old_locus_tag=SH04_07845 NZ_CP010443.1 Protein Homology CDS 1589526 1590197 . - 0 ID=cds1508;Parent=gene1567;Dbxref=Genbank:WP_001296991.1;Name=WP_001296991.1;gbkey=CDS;product=DUF1956 domain-containing tetR family transcriptional regulator;protein_id=WP_001296991.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1590426 1591790 . + . ID=gene1568;Name=SH04_RS07855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07855;old_locus_tag=SH04_07850 NZ_CP010443.1 Protein Homology CDS 1590426 1591790 . + 0 ID=cds1509;Parent=gene1568;Dbxref=Genbank:WP_000007101.1;Name=WP_000007101.1;Note=this helicase is not essential cell growth;gbkey=CDS;product=ATP-dependent RNA helicase RhlE;protein_id=WP_000007101.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1591842 1591941 . + . ID=id115;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1592022 1592471 . - . ID=gene1569;Name=SH04_RS07860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07860;old_locus_tag=SH04_07855 NZ_CP010443.1 Protein Homology CDS 1592022 1592471 . - 0 ID=cds1510;Parent=gene1569;Dbxref=Genbank:WP_001154308.1;Name=WP_001154308.1;gbkey=CDS;product=swarming motility protein;protein_id=WP_001154308.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1592624 1594774 . + . ID=gene1570;Name=dinG;gbkey=Gene;gene=dinG;gene_biotype=protein_coding;locus_tag=SH04_RS07865;old_locus_tag=SH04_07860 NZ_CP010443.1 Protein Homology CDS 1592624 1594774 . + 0 ID=cds1511;Parent=gene1570;Dbxref=Genbank:WP_001340191.1;Name=WP_001340191.1;Note=helicase involved in DNA repair and perhaps also replication;gbkey=CDS;gene=dinG;product=ATP-dependent helicase DinG;protein_id=WP_001340191.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1594802 1595764 . + . ID=gene1571;Name=SH04_RS07870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07870;old_locus_tag=SH04_07865 NZ_CP010443.1 Protein Homology CDS 1594802 1595764 . + 0 ID=cds1512;Parent=gene1571;Dbxref=Genbank:WP_000386551.1;Name=WP_000386551.1;gbkey=CDS;product=family 3 glycosyltransferase;protein_id=WP_000386551.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1595905 1596990 . + . ID=gene1572;Name=SH04_RS07875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07875;old_locus_tag=SH04_07870 NZ_CP010443.1 Protein Homology CDS 1595905 1596990 . + 0 ID=cds1513;Parent=gene1572;Dbxref=Genbank:WP_000443530.1;Name=WP_000443530.1;gbkey=CDS;product=dehydrogenase;protein_id=WP_000443530.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1597219 1597479 . - . ID=gene1573;Name=SH04_RS07880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07880;old_locus_tag=SH04_07875 NZ_CP010443.1 Protein Homology CDS 1597219 1597479 . - 0 ID=cds1514;Parent=gene1573;Dbxref=Genbank:WP_000849301.1;Name=WP_000849301.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000849301.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1597744 1598010 . - . ID=gene1574;Name=SH04_RS07885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07885;old_locus_tag=SH04_07880 NZ_CP010443.1 Protein Homology CDS 1597744 1598010 . - 0 ID=cds1515;Parent=gene1574;Dbxref=Genbank:WP_000146343.1;Name=WP_000146343.1;gbkey=CDS;product=RNA polymerase-binding protein DksA;protein_id=WP_000146343.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1598084 1598761 . - . ID=gene1575;Name=SH04_RS07890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07890;old_locus_tag=SH04_07885 NZ_CP010443.1 Protein Homology CDS 1598084 1598761 . - 0 ID=cds1516;Parent=gene1575;Dbxref=Genbank:WP_000990177.1;Name=WP_000990177.1;gbkey=CDS;product=PKHD-type hydroxylase;protein_id=WP_000990177.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1598803 1601085 . - . ID=gene1576;Name=SH04_RS07895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07895;old_locus_tag=SH04_07890 NZ_CP010443.1 Protein Homology CDS 1598803 1601085 . - 0 ID=cds1517;Parent=gene1576;Dbxref=Genbank:WP_000430057.1;Name=WP_000430057.1;Note=Fiu%3B YbiL%3B porin involved in the uptake of iron complexed with catecholate siderophores (e.g. dihydroxybenzoylserine%2C dihydroxybenzoate) and beta lactam agents%3B Fiu interacts with TonB which provides the energy required for transport across the outer membrane%3B acts as a receptor for iron-siderophores and microcins E492%2C M%2C and H47%3B outer membrane protein;gbkey=CDS;product=catecholate siderophore receptor Fiu;protein_id=WP_000430057.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1601350 1601610 . - . ID=gene1577;Name=SH04_RS07900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07900;old_locus_tag=SH04_07895 NZ_CP010443.1 Protein Homology CDS 1601350 1601610 . - 0 ID=cds1518;Parent=gene1577;Dbxref=Genbank:WP_000710619.1;Name=WP_000710619.1;gbkey=CDS;product=colanic acid mucoidy stimulation protein;protein_id=WP_000710619.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1601886 1602812 . + . ID=gene1578;Name=SH04_RS07905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07905;old_locus_tag=SH04_07900 NZ_CP010443.1 Protein Homology CDS 1601886 1602812 . + 0 ID=cds1519;Parent=gene1578;Dbxref=Genbank:WP_001295299.1;Name=WP_001295299.1;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase F;protein_id=WP_001295299.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1602809 1605034 . - . ID=gene1579;Name=SH04_RS07910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07910;old_locus_tag=SH04_07905 NZ_CP010443.1 Protein Homology CDS 1602809 1605034 . - 0 ID=cds1520;Parent=gene1579;Dbxref=Genbank:WP_001267253.1;Name=WP_001267253.1;gbkey=CDS;product=moderate conductance mechanosensitive channel YbiO;protein_id=WP_001267253.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1605295 1606017 . - . ID=gene1580;Name=glnQ;gbkey=Gene;gene=glnQ;gene_biotype=protein_coding;locus_tag=SH04_RS07915;old_locus_tag=SH04_07910 NZ_CP010443.1 Protein Homology CDS 1605295 1606017 . - 0 ID=cds1521;Parent=gene1580;Dbxref=Genbank:WP_000569083.1;Name=WP_000569083.1;Note=similar to ATP-binding component of ABC transporters;gbkey=CDS;gene=glnQ;product=glutamine transport ATP-binding protein GlnQ;protein_id=WP_000569083.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1606014 1606673 . - . ID=gene1581;Name=glnP;gbkey=Gene;gene=glnP;gene_biotype=protein_coding;locus_tag=SH04_RS07920;old_locus_tag=SH04_07915 NZ_CP010443.1 Protein Homology CDS 1606014 1606673 . - 0 ID=cds1522;Parent=gene1581;Dbxref=Genbank:WP_001159065.1;Name=WP_001159065.1;Note=similar to permease component of ABC transporters%3B mutations impair ability of Escherichia coli to transport and utilize glutamine;gbkey=CDS;gene=glnP;product=glutamine ABC transporter permease;protein_id=WP_001159065.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1606812 1607558 . - . ID=gene1582;Name=glnH;gbkey=Gene;gene=glnH;gene_biotype=protein_coding;locus_tag=SH04_RS07925;old_locus_tag=SH04_07920 NZ_CP010443.1 Protein Homology CDS 1606812 1607558 . - 0 ID=cds1523;Parent=gene1582;Dbxref=Genbank:WP_000843866.1;Name=WP_000843866.1;Note=similar to periplasmic-binding component of ABC transporters;gbkey=CDS;gene=glnH;product=glutamine-binding periplasmic protein;protein_id=WP_000843866.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1607604 1607897 . - . ID=gene1583;Name=SH04_RS07930;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS07930;pseudo=true NZ_CP010443.1 Protein Homology CDS 1607604 1607897 . - 0 ID=cds1524;Parent=gene1583;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(1607838..1607840)%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 1607962 1608465 . - . ID=gene1584;Name=SH04_RS07935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07935;old_locus_tag=SH04_07930 NZ_CP010443.1 Protein Homology CDS 1607962 1608465 . - 0 ID=cds1525;Parent=gene1584;Dbxref=Genbank:WP_000100800.1;Name=WP_000100800.1;Note=binds DNA in a non-sequence-specific manner and is abundant during stationary phase%3B forms a DNA-protein crystal that protects DNA from damage%3B required for normal starvation response and long-term stationary viability%3B forms a homododecameric complex and sequesters iron which provides protection against oxidative damage;gbkey=CDS;product=DNA protection during starvation protein;protein_id=WP_000100800.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1608764 1609651 . - . ID=gene1585;Name=SH04_RS07940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07940;old_locus_tag=SH04_07935 NZ_CP010443.1 Protein Homology CDS 1608764 1609651 . - 0 ID=cds1526;Parent=gene1585;Dbxref=Genbank:WP_001295297.1;Name=WP_001295297.1;gbkey=CDS;product=threonine/homoserine exporter RhtA;protein_id=WP_001295297.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1610004 1610519 . + . ID=gene1586;Name=ompX;gbkey=Gene;gene=ompX;gene_biotype=protein_coding;locus_tag=SH04_RS07945;old_locus_tag=SH04_07940 NZ_CP010443.1 Protein Homology CDS 1610004 1610519 . + 0 ID=cds1527;Parent=gene1586;Dbxref=Genbank:WP_001295296.1;Name=WP_001295296.1;Note=OmpX%3B involved in cell adhesion%3B forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface%3B mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains;gbkey=CDS;gene=ompX;product=outer membrane protein X;protein_id=WP_001295296.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1610568 1612151 . - . ID=gene1587;Name=SH04_RS07950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07950;old_locus_tag=SH04_07945 NZ_CP010443.1 Protein Homology CDS 1610568 1612151 . - 0 ID=cds1528;Parent=gene1587;Dbxref=Genbank:WP_001054678.1;Name=WP_001054678.1;gbkey=CDS;product=phosphoethanolamine transferase OpgE;protein_id=WP_001054678.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1612423 1612551 . - . ID=gene1588;Name=SH04_RS07955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07955;old_locus_tag=SH04_07950 NZ_CP010443.1 Protein Homology CDS 1612423 1612551 . - 0 ID=cds1529;Parent=gene1588;Dbxref=Genbank:WP_001001761.1;Name=WP_001001761.1;gbkey=CDS;product=small protein MntS;protein_id=WP_001001761.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1612737 1613204 . + . ID=gene1589;Name=SH04_RS07960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07960;old_locus_tag=SH04_07955 NZ_CP010443.1 Protein Homology CDS 1612737 1613204 . + 0 ID=cds1530;Parent=gene1589;Dbxref=Genbank:WP_000091016.1;Name=WP_000091016.1;Note=Transcriptional regulator that represses the manganese transporter MntH when manganese is present;gbkey=CDS;product=transcriptional regulator MntR;protein_id=WP_000091016.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1613201 1614319 . + . ID=gene1590;Name=SH04_RS07965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07965;old_locus_tag=SH04_07960 NZ_CP010443.1 Protein Homology CDS 1613201 1614319 . + 0 ID=cds1531;Parent=gene1590;Dbxref=Genbank:WP_000056457.1;Name=WP_000056457.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000056457.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1614378 1615298 . - . ID=gene1591;Name=SH04_RS07970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07970;old_locus_tag=SH04_07965 NZ_CP010443.1 Protein Homology CDS 1614378 1615298 . - 0 ID=cds1532;Parent=gene1591;Dbxref=Genbank:WP_001056384.1;Name=WP_001056384.1;gbkey=CDS;product=transpeptidase;protein_id=WP_001056384.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1615517 1617109 . + . ID=gene1592;Name=SH04_RS07975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07975;old_locus_tag=SH04_07970 NZ_CP010443.1 Protein Homology CDS 1615517 1617109 . + 0 ID=cds1533;Parent=gene1592;Dbxref=Genbank:WP_000961458.1;Name=WP_000961458.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_000961458.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1617350 1618615 . - . ID=gene1593;Name=SH04_RS07980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07980;old_locus_tag=SH04_07975 NZ_CP010443.1 Protein Homology CDS 1617350 1618615 . - 0 ID=cds1534;Parent=gene1593;Dbxref=Genbank:WP_000168797.1;Name=WP_000168797.1;gbkey=CDS;product=DUF1479 domain-containing protein;protein_id=WP_000168797.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1618767 1619582 . - . ID=gene1594;Name=SH04_RS07985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07985;old_locus_tag=SH04_07980 NZ_CP010443.1 Protein Homology CDS 1618767 1619582 . - 0 ID=cds1535;Parent=gene1594;Dbxref=Genbank:WP_000114272.1;Name=WP_000114272.1;gbkey=CDS;product=sugar phosphatase YbiV;protein_id=WP_000114272.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1619728 1622160 . - . ID=gene1595;Name=SH04_RS07990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07990;old_locus_tag=SH04_07985 NZ_CP010443.1 Protein Homology CDS 1619728 1622160 . - 0 ID=cds1536;Parent=gene1595;Dbxref=Genbank:WP_000209309.1;Name=WP_000209309.1;gbkey=CDS;product=pyruvate formate lyase;protein_id=WP_000209309.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1622166 1623065 . - . ID=gene1596;Name=SH04_RS07995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS07995;old_locus_tag=SH04_07990 NZ_CP010443.1 Protein Homology CDS 1622166 1623065 . - 0 ID=cds1537;Parent=gene1596;Dbxref=Genbank:WP_001295295.1;Name=WP_001295295.1;gbkey=CDS;product=pyruvate formate lyase activating enzyme;protein_id=WP_001295295.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1623196 1623858 . + . ID=gene1597;Name=SH04_RS08000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08000;old_locus_tag=SH04_07995 NZ_CP010443.1 Protein Homology CDS 1623196 1623858 . + 0 ID=cds1538;Parent=gene1597;Dbxref=Genbank:WP_001336208.1;Name=WP_001336208.1;Note=similar to transaldolase from Escherichia coli%3B many organisms have multiple copies;gbkey=CDS;product=fructose-6-phosphate aldolase 1;protein_id=WP_001336208.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1623934 1624683 . - . ID=gene1598;Name=SH04_RS08005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08005;old_locus_tag=SH04_08000 NZ_CP010443.1 Protein Homology CDS 1623934 1624683 . - 0 ID=cds1539;Parent=gene1598;Dbxref=Genbank:WP_000829217.1;Name=WP_000829217.1;gbkey=CDS;product=molybdopterin-synthase adenylyltransferase;protein_id=WP_000829217.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1624683 1625918 . - . ID=gene1599;Name=SH04_RS08010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08010;old_locus_tag=SH04_08005 NZ_CP010443.1 Protein Homology CDS 1624683 1625918 . - 0 ID=cds1540;Parent=gene1599;Dbxref=Genbank:WP_000397340.1;Name=WP_000397340.1;Note=is involved in the formation of active molybdenum cofactor and the chelation of molybdenum;gbkey=CDS;product=molybdopterin molybdenumtransferase;protein_id=WP_000397340.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1626122 1627087 . + . ID=gene1600;Name=SH04_RS08015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08015;old_locus_tag=SH04_08010 NZ_CP010443.1 Protein Homology CDS 1626122 1627087 . + 0 ID=cds1541;Parent=gene1600;Dbxref=Genbank:WP_000513781.1;Name=WP_000513781.1;gbkey=CDS;product=isoaspartyl peptidase;protein_id=WP_000513781.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1627074 1628945 . + . ID=gene1601;Name=SH04_RS08020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08020;old_locus_tag=SH04_08015 NZ_CP010443.1 Protein Homology CDS 1627074 1628945 . + 0 ID=cds1542;Parent=gene1601;Dbxref=Genbank:WP_001301279.1;Name=WP_001301279.1;Note=with GsiBCD is involved in glutathione import%3B GsiA contains 2 ATP-binding domains;gbkey=CDS;product=glutathione import ATP-binding protein GsiA;protein_id=WP_001301279.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1628965 1630503 . + . ID=gene1602;Name=SH04_RS08025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08025;old_locus_tag=SH04_08020 NZ_CP010443.1 Protein Homology CDS 1628965 1630503 . + 0 ID=cds1543;Parent=gene1602;Dbxref=Genbank:WP_000090140.1;Name=WP_000090140.1;Note=with GsiACD is involved in the transport of glutathione into the cell;gbkey=CDS;product=glutathione-binding protein GsiB;protein_id=WP_000090140.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1630521 1631441 . + . ID=gene1603;Name=SH04_RS08030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08030;old_locus_tag=SH04_08025 NZ_CP010443.1 Protein Homology CDS 1630521 1631441 . + 0 ID=cds1544;Parent=gene1603;Dbxref=Genbank:WP_000936043.1;Name=WP_000936043.1;Note=with GsiABD is involved in the transport of glutathione into the cell;gbkey=CDS;product=glutathione ABC transporter permease;protein_id=WP_000936043.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1631444 1632355 . + . ID=gene1604;Name=SH04_RS08035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08035;old_locus_tag=SH04_08030 NZ_CP010443.1 Protein Homology CDS 1631444 1632355 . + 0 ID=cds1545;Parent=gene1604;Dbxref=Genbank:WP_001236051.1;Name=WP_001236051.1;Note=with GsiABD is involved in the transport of glutathione into the cell;gbkey=CDS;product=glutathione ABC transporter permease;protein_id=WP_001236051.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1632533 1634881 . + . ID=gene1605;Name=SH04_RS08040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08040;old_locus_tag=SH04_08035 NZ_CP010443.1 Protein Homology CDS 1632533 1634881 . + 0 ID=cds1546;Parent=gene1605;Dbxref=Genbank:WP_001360263.1;Name=WP_001360263.1;gbkey=CDS;product=cyclic-di-GMP phosphodiesterase;protein_id=WP_001360263.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1634889 1636217 . + . ID=gene1606;Name=SH04_RS08045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08045;old_locus_tag=SH04_08040 NZ_CP010443.1 Protein Homology CDS 1634889 1636217 . + 0 ID=cds1547;Parent=gene1606;Dbxref=Genbank:WP_000086904.1;Name=WP_000086904.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_000086904.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1636264 1637589 . - . ID=gene1607;Name=rimO;gbkey=Gene;gene=rimO;gene_biotype=protein_coding;locus_tag=SH04_RS08050;old_locus_tag=SH04_08045 NZ_CP010443.1 Protein Homology CDS 1636264 1637589 . - 0 ID=cds1548;Parent=gene1607;Dbxref=Genbank:WP_000049367.1;Name=WP_000049367.1;Note=catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit;gbkey=CDS;gene=rimO;product=ribosomal protein S12 methylthiotransferase RimO;protein_id=WP_000049367.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1637802 1638185 . + . ID=gene1608;Name=bssR;gbkey=Gene;gene=bssR;gene_biotype=protein_coding;gene_synonym=yliH;locus_tag=SH04_RS08055;old_locus_tag=SH04_08050 NZ_CP010443.1 Protein Homology CDS 1637802 1638185 . + 0 ID=cds1549;Parent=gene1608;Dbxref=Genbank:WP_000497137.1;Name=WP_000497137.1;Note=BssS%3B regulator of biofilm through signal secretion%3B disruption of this gene in Escherichia coli led to effects on biofilm formation%2C alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing;gbkey=CDS;gene=bssR;product=biofilm regulator BssR;protein_id=WP_000497137.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1638296 1639411 . + . ID=gene1609;Name=SH04_RS08060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08060;old_locus_tag=SH04_08055 NZ_CP010443.1 Protein Homology CDS 1638296 1639411 . + 0 ID=cds1550;Parent=gene1609;Dbxref=Genbank:WP_000555031.1;Name=WP_000555031.1;gbkey=CDS;product=soluble aldose sugar dehydrogenase YliI;protein_id=WP_000555031.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1639408 1640034 . - . ID=gene1610;Name=SH04_RS08065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08065;old_locus_tag=SH04_08060 NZ_CP010443.1 Protein Homology CDS 1639408 1640034 . - 0 ID=cds1551;Parent=gene1610;Dbxref=Genbank:WP_001295292.1;Name=WP_001295292.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_001295292.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1640281 1641483 . + . ID=gene1611;Name=SH04_RS08070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08070;old_locus_tag=SH04_08065 NZ_CP010443.1 Protein Homology CDS 1640281 1641483 . + 0 ID=cds1552;Parent=gene1611;Dbxref=Genbank:WP_001300708.1;Name=WP_001300708.1;gbkey=CDS;product=D-alanyl-D-alanine carboxypeptidase;protein_id=WP_001300708.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1641530 1642288 . - . ID=gene1612;Name=SH04_RS08075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08075;old_locus_tag=SH04_08070 NZ_CP010443.1 Protein Homology CDS 1641530 1642288 . - 0 ID=cds1553;Parent=gene1612;Dbxref=Genbank:WP_000450121.1;Name=WP_000450121.1;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_000450121.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1642346 1642942 . - . ID=gene1613;Name=SH04_RS08080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08080;old_locus_tag=SH04_08075 NZ_CP010443.1 Protein Homology CDS 1642346 1642942 . - 0 ID=cds1554;Parent=gene1613;Dbxref=Genbank:WP_001295291.1;Name=WP_001295291.1;gbkey=CDS;product=undecaprenyl pyrophosphate phosphatase;protein_id=WP_001295291.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1643227 1644459 . + . ID=gene1614;Name=SH04_RS08085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08085;old_locus_tag=SH04_08080 NZ_CP010443.1 Protein Homology CDS 1643227 1644459 . + 0 ID=cds1555;Parent=gene1614;Dbxref=Genbank:WP_001180089.1;Name=WP_001180089.1;gbkey=CDS;product=multidrug transporter MdfA;protein_id=WP_001180089.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1644500 1644778 . - . ID=gene1615;Name=SH04_RS08090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08090;old_locus_tag=SH04_08085 NZ_CP010443.1 Protein Homology CDS 1644500 1644778 . - 0 ID=cds1556;Parent=gene1615;Dbxref=Genbank:WP_001295900.1;Name=WP_001295900.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295900.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1644870 1645685 . - . ID=gene1616;Name=SH04_RS08095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08095;old_locus_tag=SH04_08090 NZ_CP010443.1 Protein Homology CDS 1644870 1645685 . - 0 ID=cds1557;Parent=gene1616;Dbxref=Genbank:WP_000023565.1;Name=WP_000023565.1;gbkey=CDS;product=flavin mononucleotide phosphatase YbjI;protein_id=WP_000023565.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1645685 1646893 . - . ID=gene1617;Name=SH04_RS08100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08100;old_locus_tag=SH04_08095 NZ_CP010443.1 Protein Homology CDS 1645685 1646893 . - 0 ID=cds1558;Parent=gene1617;Dbxref=Genbank:WP_000217859.1;Name=WP_000217859.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000217859.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1646977 1647513 . + . ID=gene1618;Name=SH04_RS08105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08105;old_locus_tag=SH04_08100 NZ_CP010443.1 Protein Homology CDS 1646977 1647513 . + 0 ID=cds1559;Parent=gene1618;Dbxref=Genbank:WP_001295289.1;Name=WP_001295289.1;gbkey=CDS;product=DNA-binding transcriptional regulator;protein_id=WP_001295289.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1647688 1649373 . - . ID=gene1619;Name=SH04_RS08110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08110;old_locus_tag=SH04_08105 NZ_CP010443.1 Protein Homology CDS 1647688 1649373 . - 0 ID=cds1560;Parent=gene1619;Dbxref=Genbank:WP_001024876.1;Name=WP_001024876.1;gbkey=CDS;product=transporter;protein_id=WP_001024876.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1649643 1650020 . + . ID=gene1620;Name=SH04_RS08115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08115;old_locus_tag=SH04_08110 NZ_CP010443.1 Protein Homology CDS 1649643 1650020 . + 0 ID=cds1561;Parent=gene1620;Dbxref=Genbank:WP_000681108.1;Name=WP_000681108.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000681108.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1650050 1650307 . - . ID=gene1621;Name=SH04_RS08120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08120;old_locus_tag=SH04_08115 NZ_CP010443.1 Protein Homology CDS 1650050 1650307 . - 0 ID=cds1562;Parent=gene1621;Dbxref=Genbank:WP_001195240.1;Name=WP_001195240.1;Note=functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase%3B also involved in reducing some disulfides in a coupled system with glutathione reductase;gbkey=CDS;product=glutaredoxin;protein_id=WP_001195240.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1650467 1650754 . + . ID=gene1622;Name=SH04_RS08125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08125;old_locus_tag=SH04_08120 NZ_CP010443.1 Protein Homology CDS 1650467 1650754 . + 0 ID=cds1563;Parent=gene1622;Dbxref=Genbank:WP_001201560.1;Name=WP_001201560.1;Note=YbjC%3B located in the same operon as the nfsA gene%3B member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress%3B induced by paraquat%3B regulated by SoxS%3B unknown function;gbkey=CDS;product=DUF1418 domain-containing protein;protein_id=WP_001201560.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1650738 1651460 . + . ID=gene1623;Name=SH04_RS08130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08130;old_locus_tag=SH04_08125 NZ_CP010443.1 Protein Homology CDS 1650738 1651460 . + 0 ID=cds1564;Parent=gene1623;Dbxref=Genbank:WP_000189159.1;Name=WP_000189159.1;Note=NADPH-dependent%3B oxygen-insensitive%3B catalyzes the reduction of nitroaromatic compounds;gbkey=CDS;product=oxygen-insensitive NADPH nitroreductase;protein_id=WP_000189159.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1651521 1652423 . + . ID=gene1624;Name=SH04_RS08135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08135;old_locus_tag=SH04_08130 NZ_CP010443.1 Protein Homology CDS 1651521 1652423 . + 0 ID=cds1565;Parent=gene1624;Dbxref=Genbank:WP_000684321.1;Name=WP_000684321.1;Note=responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6;gbkey=CDS;product=ribosomal protein S6--L-glutamate ligase;protein_id=WP_000684321.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1652511 1652987 . + . ID=gene1625;Name=SH04_RS08140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08140;old_locus_tag=SH04_08135 NZ_CP010443.1 Protein Homology CDS 1652511 1652987 . + 0 ID=cds1566;Parent=gene1625;Dbxref=Genbank:WP_000203025.1;Name=WP_000203025.1;gbkey=CDS;product=negative regulator of motility%3B multicopy suppressor of coaA(Ts);protein_id=WP_000203025.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1653193 1653354 . + . ID=gene1626;Name=SH04_RS08145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08145;old_locus_tag=SH04_08140 NZ_CP010443.1 Protein Homology CDS 1653193 1653354 . + 0 ID=cds1567;Parent=gene1626;Dbxref=Genbank:WP_001303977.1;Name=WP_001303977.1;gbkey=CDS;product=putrescine/spermidine ABC transporter substrate-binding protein;protein_id=WP_001303977.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1653338 1654450 . + . ID=gene1627;Name=SH04_RS08150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08150;old_locus_tag=SH04_08145 NZ_CP010443.1 Protein Homology CDS 1653338 1654450 . + 0 ID=cds1568;Parent=gene1627;Dbxref=Genbank:WP_000126072.1;Name=WP_000126072.1;gbkey=CDS;product=putrescine-binding periplasmic protein;protein_id=WP_000126072.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1654545 1655678 . + . ID=gene1628;Name=potG;gbkey=Gene;gene=potG;gene_biotype=protein_coding;locus_tag=SH04_RS08155;old_locus_tag=SH04_08150 NZ_CP010443.1 Protein Homology CDS 1654545 1655678 . + 0 ID=cds1569;Parent=gene1628;Dbxref=Genbank:WP_000996005.1;Name=WP_000996005.1;Note=part of the PotFGHI ATP-dependent putrescine transporter;gbkey=CDS;gene=potG;product=putrescine transport ATP-binding protein PotG;protein_id=WP_000996005.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1655688 1656641 . + . ID=gene1629;Name=SH04_RS08160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08160;old_locus_tag=SH04_08155 NZ_CP010443.1 Protein Homology CDS 1655688 1656641 . + 0 ID=cds1570;Parent=gene1629;Dbxref=Genbank:WP_000105430.1;Name=WP_000105430.1;gbkey=CDS;product=spermidine/putrescine ABC transporter permease;protein_id=WP_000105430.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1656638 1657483 . + . ID=gene1630;Name=SH04_RS08165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08165;old_locus_tag=SH04_08160 NZ_CP010443.1 Protein Homology CDS 1656638 1657483 . + 0 ID=cds1571;Parent=gene1630;Dbxref=Genbank:WP_001061658.1;Name=WP_001061658.1;gbkey=CDS;product=spermidine/putrescine ABC transporter permease;protein_id=WP_001061658.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1657543 1658031 . + . ID=gene1631;Name=SH04_RS08170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08170;old_locus_tag=SH04_08165 NZ_CP010443.1 Protein Homology CDS 1657543 1658031 . + 0 ID=cds1572;Parent=gene1631;Dbxref=Genbank:WP_000389260.1;Name=WP_000389260.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000389260.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1658072 1659199 . + . ID=gene1632;Name=rumB;gbkey=Gene;gene=rumB;gene_biotype=protein_coding;locus_tag=SH04_RS08175;old_locus_tag=SH04_08170 NZ_CP010443.1 Protein Homology CDS 1658072 1659199 . + 0 ID=cds1573;Parent=gene1632;Dbxref=Genbank:WP_001149682.1;Name=WP_001149682.1;Note=RNA uridine methyltransferase B%3B catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA;gbkey=CDS;gene=rumB;product=23S rRNA (uracil(747)-C(5))-methyltransferase RlmC;protein_id=WP_001149682.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1659398 1660129 . - . ID=gene1633;Name=SH04_RS08180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08180;old_locus_tag=SH04_08175 NZ_CP010443.1 Protein Homology CDS 1659398 1660129 . - 0 ID=cds1574;Parent=gene1633;Dbxref=Genbank:WP_001295339.1;Name=WP_001295339.1;Note=with ArtPMQI is involved in arginine transport;gbkey=CDS;product=ABC transporter arginine-binding protein 1;protein_id=WP_001295339.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1660420 1661088 . - . ID=gene1634;Name=artM;gbkey=Gene;gene=artM;gene_biotype=protein_coding;locus_tag=SH04_RS08185;old_locus_tag=SH04_08180 NZ_CP010443.1 Protein Homology CDS 1660420 1661088 . - 0 ID=cds1575;Parent=gene1634;Dbxref=Genbank:WP_000464491.1;Name=WP_000464491.1;Note=with ArtPQJI acts to transport arginine across the inner membrane;gbkey=CDS;gene=artM;product=arginine ABC transporter permease ArtM;protein_id=WP_000464491.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1661088 1661804 . - . ID=gene1635;Name=SH04_RS08190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08190;old_locus_tag=SH04_08185 NZ_CP010443.1 Protein Homology CDS 1661088 1661804 . - 0 ID=cds1576;Parent=gene1635;Dbxref=Genbank:WP_001001691.1;Name=WP_001001691.1;Note=with ArtPMJI transports arginine across the inner membrane;gbkey=CDS;product=arginine ABC transporter permease ArtQ;protein_id=WP_001001691.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1661811 1662542 . - . ID=gene1636;Name=SH04_RS08195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08195;old_locus_tag=SH04_08190 NZ_CP010443.1 Protein Homology CDS 1661811 1662542 . - 0 ID=cds1577;Parent=gene1636;Dbxref=Genbank:WP_000756569.1;Name=WP_000756569.1;Note=with ArtPMQI is involved in arginine transport;gbkey=CDS;product=arginine ABC transporter substrate-binding protein;protein_id=WP_000756569.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1662560 1663288 . - . ID=gene1637;Name=SH04_RS08200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08200;old_locus_tag=SH04_08195 NZ_CP010443.1 Protein Homology CDS 1662560 1663288 . - 0 ID=cds1578;Parent=gene1637;Dbxref=Genbank:WP_000027205.1;Name=WP_000027205.1;gbkey=CDS;product=arginine transport ATP-binding protein ArtP;protein_id=WP_000027205.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1663506 1664021 . - . ID=gene1638;Name=SH04_RS08205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08205;old_locus_tag=SH04_08200 NZ_CP010443.1 Protein Homology CDS 1663506 1664021 . - 0 ID=cds1579;Parent=gene1638;Dbxref=Genbank:WP_001270734.1;Name=WP_001270734.1;Note=induced during stationary phase and by acivicin (a glutamine analog)%3B regulated by Lrp and RpoS;gbkey=CDS;product=lipoprotein;protein_id=WP_001270734.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1664147 1664470 . + . ID=gene1639;Name=SH04_RS08210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08210;old_locus_tag=SH04_08205 NZ_CP010443.1 Protein Homology CDS 1664147 1664470 . + 0 ID=cds1580;Parent=gene1639;Dbxref=Genbank:WP_001160737.1;Name=WP_001160737.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001160737.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1664467 1665297 . + . ID=gene1640;Name=SH04_RS08215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08215;old_locus_tag=SH04_08210 NZ_CP010443.1 Protein Homology CDS 1664467 1665297 . + 0 ID=cds1581;Parent=gene1640;Dbxref=Genbank:WP_001252135.1;Name=WP_001252135.1;Note=catalyzes the cleavage of the bond between muamic acid and l-alanine;gbkey=CDS;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_001252135.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1665294 1666307 . - . ID=gene1641;Name=SH04_RS08220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08220;old_locus_tag=SH04_08215 NZ_CP010443.1 Protein Homology CDS 1665294 1666307 . - 0 ID=cds1582;Parent=gene1641;Dbxref=Genbank:WP_001338420.1;Name=WP_001338420.1;gbkey=CDS;product=NAD(P)H-dependent oxidoreductase;protein_id=WP_001338420.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1666406 1667836 . - . ID=gene1642;Name=SH04_RS08225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08225;old_locus_tag=SH04_08220 NZ_CP010443.1 Protein Homology CDS 1666406 1667836 . - 0 ID=cds1583;Parent=gene1642;Dbxref=Genbank:WP_001136554.1;Name=WP_001136554.1;gbkey=CDS;product=NAD-dependent oxidoreductase;protein_id=WP_001136554.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1667847 1668848 . - . ID=gene1643;Name=SH04_RS08230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08230;old_locus_tag=SH04_08225 NZ_CP010443.1 Protein Homology CDS 1667847 1668848 . - 0 ID=cds1584;Parent=gene1643;Dbxref=Genbank:WP_000566376.1;Name=WP_000566376.1;Note=low- specificity%3B catalyzes the formation of acetaldehyde and glycine from L-threonine%3B acts on L-threonine%2C L-allo-threonine%2C L-threo-phenylserine%2C and L-erythro-phenylserine;gbkey=CDS;product=low specificity L-threonine aldolase;protein_id=WP_000566376.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1668885 1670603 . - . ID=gene1644;Name=SH04_RS08235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08235;old_locus_tag=SH04_08230 NZ_CP010443.1 Protein Homology CDS 1668885 1670603 . - 0 ID=cds1585;Parent=gene1644;Dbxref=Genbank:WP_000815337.1;Name=WP_000815337.1;Note=catalyzes the formation of acetate from pyruvate;gbkey=CDS;product=pyruvate dehydrogenase [ubiquinone];protein_id=WP_000815337.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1670736 1671704 . - . ID=gene1645;Name=SH04_RS08240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08240;old_locus_tag=SH04_08235 NZ_CP010443.1 Protein Homology CDS 1670736 1671704 . - 0 ID=cds1586;Parent=gene1645;Dbxref=Genbank:WP_000178677.1;Name=WP_000178677.1;gbkey=CDS;product=NADH oxidoreductase HCR;protein_id=WP_000178677.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1671716 1673368 . - . ID=gene1646;Name=SH04_RS08245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08245;old_locus_tag=SH04_08240 NZ_CP010443.1 Protein Homology CDS 1671716 1673368 . - 0 ID=cds1587;Parent=gene1646;Dbxref=Genbank:WP_000458809.1;Name=WP_000458809.1;gbkey=CDS;product=hydroxylamine reductase;protein_id=WP_000458809.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1673512 1674411 . - . ID=gene1647;Name=SH04_RS08250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08250;old_locus_tag=SH04_08245 NZ_CP010443.1 Protein Homology CDS 1673512 1674411 . - 0 ID=cds1588;Parent=gene1647;Dbxref=Genbank:WP_000491142.1;Name=WP_000491142.1;gbkey=CDS;product=transporter;protein_id=WP_000491142.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1674581 1674800 . + . ID=id116;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1674906 1675601 . - . ID=gene1648;Name=SH04_RS08255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08255;old_locus_tag=SH04_08250 NZ_CP010443.1 Protein Homology CDS 1674906 1675601 . - 0 ID=cds1589;Parent=gene1648;Dbxref=Genbank:WP_001298299.1;Name=WP_001298299.1;Note=porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure;gbkey=CDS;product=aquaporin Z;protein_id=WP_001298299.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1675814 1675969 . - . ID=gene1649;Name=SH04_RS08260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08260;old_locus_tag=SH04_08255 NZ_CP010443.1 Protein Homology CDS 1675814 1675969 . - 0 ID=cds1590;Parent=gene1649;Dbxref=Genbank:WP_000908266.1;Name=WP_000908266.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000908266.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1676027 1677685 . + . ID=gene1650;Name=SH04_RS08265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08265;old_locus_tag=SH04_08260 NZ_CP010443.1 Protein Homology CDS 1676027 1677685 . + 0 ID=cds1591;Parent=gene1650;Dbxref=Genbank:WP_000599802.1;Name=WP_000599802.1;gbkey=CDS;product=OLD family ATP-dependent endonuclease%3B DUF2813 family protein;protein_id=WP_000599802.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1677682 1678674 . - . ID=gene1651;Name=SH04_RS08270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08270;old_locus_tag=SH04_08265 NZ_CP010443.1 Protein Homology CDS 1677682 1678674 . - 0 ID=cds1592;Parent=gene1651;Dbxref=Genbank:WP_000241033.1;Name=WP_000241033.1;gbkey=CDS;product=DUF535 domain-containing protein;protein_id=WP_000241033.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1678789 1679904 . + . ID=gene1652;Name=SH04_RS08275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08275;old_locus_tag=SH04_08270 NZ_CP010443.1 Protein Homology CDS 1678789 1679904 . + 0 ID=cds1593;Parent=gene1652;Dbxref=Genbank:WP_000746442.1;Name=WP_000746442.1;Note=confers macrolide resistance via active drug efflux;gbkey=CDS;product=MacA family efflux pump subunit;protein_id=WP_000746442.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1679901 1681847 . + . ID=gene1653;Name=SH04_RS08280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08280;old_locus_tag=SH04_08275 NZ_CP010443.1 Protein Homology CDS 1679901 1681847 . + 0 ID=cds1594;Parent=gene1653;Dbxref=Genbank:WP_000188144.1;Name=WP_000188144.1;Note=with MacA is involved in the export of macrolide;gbkey=CDS;product=macrolide export ATP-binding/permease MacB;protein_id=WP_000188144.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1681920 1682144 . - . ID=gene1654;Name=SH04_RS08285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08285;old_locus_tag=SH04_08280 NZ_CP010443.1 Protein Homology CDS 1681920 1682144 . - 0 ID=cds1595;Parent=gene1654;Dbxref=Genbank:WP_000410785.1;Name=WP_000410785.1;Note=inhibits DNA replication at both initiation and elongation steps%3B stationary phase and starvation inducible;gbkey=CDS;product=cold-shock protein CspD;protein_id=WP_000410785.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1682467 1682787 . + . ID=gene1655;Name=clpS;gbkey=Gene;gene=clpS;gene_biotype=protein_coding;locus_tag=SH04_RS08290;old_locus_tag=SH04_08285 NZ_CP010443.1 Protein Homology CDS 1682467 1682787 . + 0 ID=cds1596;Parent=gene1655;Dbxref=Genbank:WP_000520781.1;Name=WP_000520781.1;Note=involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation%3B binds to the N-terminal domain of the chaperone ClpA;gbkey=CDS;gene=clpS;product=ATP-dependent Clp protease adapter protein ClpS;protein_id=WP_000520781.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1682818 1685094 . + . ID=gene1656;Name=clpA;gbkey=Gene;gene=clpA;gene_biotype=protein_coding;locus_tag=SH04_RS08295;old_locus_tag=SH04_08290 NZ_CP010443.1 Protein Homology CDS 1682818 1685094 . + 0 ID=cds1597;Parent=gene1656;Dbxref=Genbank:WP_000934041.1;Name=WP_000934041.1;Note=ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease%3B directs protease to specific substrates;gbkey=CDS;gene=clpA;product=ATP-dependent Clp protease ATP-binding subunit ClpA;protein_id=WP_000934041.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1685395 1685532 . + . ID=id117;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1685438 1685525 . - . ID=gene1657;Name=SH04_RS08300;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS08300;old_locus_tag=SH04_08295 NZ_CP010443.1 tRNAscan-SE tRNA 1685438 1685525 . - . ID=rna59;Parent=gene1657;anticodon=(pos:complement(1685489..1685491));gbkey=tRNA;product=tRNA-Ser NZ_CP010443.1 tRNAscan-SE exon 1685438 1685525 . - . ID=id118;Parent=rna59;anticodon=(pos:complement(1685489..1685491));gbkey=tRNA;product=tRNA-Ser NZ_CP010443.1 RefSeq gene 1685779 1685997 . - . ID=gene1658;Name=SH04_RS08305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08305;old_locus_tag=SH04_08300 NZ_CP010443.1 Protein Homology CDS 1685779 1685997 . - 0 ID=cds1598;Parent=gene1658;Dbxref=Genbank:WP_001040187.1;Name=WP_001040187.1;gbkey=CDS;product=translation initiation factor IF-1;protein_id=WP_001040187.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1686282 1686986 . - . ID=gene1659;Name=aat;gbkey=Gene;gene=aat;gene_biotype=protein_coding;locus_tag=SH04_RS08310;old_locus_tag=SH04_08305 NZ_CP010443.1 Protein Homology CDS 1686282 1686986 . - 0 ID=cds1599;Parent=gene1659;Dbxref=Genbank:WP_001241678.1;Name=WP_001241678.1;Note=leucyltransferase%3B phenylalanyltransferse%3B functions in the N-end rule pathway%3B transfers Leu%2C Phe%2C Met%2C from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys;gbkey=CDS;gene=aat;product=leucyl/phenylalanyl-tRNA--protein transferase;protein_id=WP_001241678.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1687028 1688749 . - . ID=gene1660;Name=SH04_RS08315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08315;old_locus_tag=SH04_08310 NZ_CP010443.1 Protein Homology CDS 1687028 1688749 . - 0 ID=cds1600;Parent=gene1660;Dbxref=Genbank:WP_001202177.1;Name=WP_001202177.1;Note=in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance%3B important for cytochrome bd and c;gbkey=CDS;product=ATP-binding/permease CydC;protein_id=WP_001202177.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1688750 1690516 . - . ID=gene1661;Name=SH04_RS08320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08320;old_locus_tag=SH04_08315 NZ_CP010443.1 Protein Homology CDS 1688750 1690516 . - 0 ID=cds1601;Parent=gene1661;Dbxref=Genbank:WP_001043598.1;Name=WP_001043598.1;Note=in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance%3B important for cytochrome bd and c;gbkey=CDS;product=ATP-binding/permease CydD;protein_id=WP_001043598.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1690639 1691604 . - . ID=gene1662;Name=SH04_RS08325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08325;old_locus_tag=SH04_08320 NZ_CP010443.1 Protein Homology CDS 1690639 1691604 . - 0 ID=cds1602;Parent=gene1662;Dbxref=Genbank:WP_000537418.1;Name=WP_000537418.1;Note=catalyzes the transfer of electrons from NADPH to thioredoxin%3B FAD/NAD(P) binding;gbkey=CDS;product=thioredoxin reductase;protein_id=WP_000537418.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1692149 1692643 . + . ID=gene1663;Name=SH04_RS08330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08330;old_locus_tag=SH04_08325 NZ_CP010443.1 Protein Homology CDS 1692149 1692643 . + 0 ID=cds1603;Parent=gene1663;Dbxref=Genbank:WP_000228473.1;Name=WP_000228473.1;Note=mediates a global response to leucine%3B acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system;gbkey=CDS;product=leucine-responsive regulatory protein;protein_id=WP_000228473.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1692778 1696767 . + . ID=gene1664;Name=SH04_RS08335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08335;old_locus_tag=SH04_08330 NZ_CP010443.1 Protein Homology CDS 1692778 1696767 . + 0 ID=cds1604;Parent=gene1664;Dbxref=Genbank:WP_000076967.1;Name=WP_000076967.1;Note=DNA-binding membrane protein required for chromosome resolution and partitioning;gbkey=CDS;product=cell division protein FtsK;protein_id=WP_000076967.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1696926 1697537 . + . ID=gene1665;Name=lolA;gbkey=Gene;gene=lolA;gene_biotype=protein_coding;locus_tag=SH04_RS08340;old_locus_tag=SH04_08335 NZ_CP010443.1 Protein Homology CDS 1696926 1697537 . + 0 ID=cds1605;Parent=gene1665;Dbxref=Genbank:WP_001295343.1;Name=WP_001295343.1;Note=participates with LolB in the incorporation of lipoprotein into the outer membrane;gbkey=CDS;gene=lolA;product=outer membrane lipoprotein carrier protein LolA;protein_id=WP_001295343.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1697548 1698891 . + . ID=gene1666;Name=SH04_RS08345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08345;old_locus_tag=SH04_08340 NZ_CP010443.1 Protein Homology CDS 1697548 1698891 . + 0 ID=cds1606;Parent=gene1666;Dbxref=Genbank:WP_000067755.1;Name=WP_000067755.1;gbkey=CDS;product=replication-associated recombination protein A;protein_id=WP_000067755.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1698982 1700274 . + . ID=gene1667;Name=SH04_RS08350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08350;old_locus_tag=SH04_08345 NZ_CP010443.1 Protein Homology CDS 1698982 1700274 . + 0 ID=cds1607;Parent=gene1667;Dbxref=Genbank:WP_000886683.1;Name=WP_000886683.1;gbkey=CDS;product=serine--tRNA ligase;protein_id=WP_000886683.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1700513 1702957 . + . ID=gene1668;Name=SH04_RS08355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08355;old_locus_tag=SH04_08350 NZ_CP010443.1 Protein Homology CDS 1700513 1702957 . + 0 ID=cds1608;Parent=gene1668;Dbxref=Genbank:WP_000850303.1;Name=WP_000850303.1;gbkey=CDS;product=dimethyl sulfoxide reductase DmsA;protein_id=WP_000850303.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1702968 1703585 . + . ID=gene1669;Name=SH04_RS08360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08360;old_locus_tag=SH04_08355 NZ_CP010443.1 Protein Homology CDS 1702968 1703585 . + 0 ID=cds1609;Parent=gene1669;Dbxref=Genbank:WP_000213098.1;Name=WP_000213098.1;Note=oxidoreductase%2C Fe-S subunit%3B terminal electron transfer protein for the reduction of DMSO;gbkey=CDS;product=dimethyl sulfoxide reductase subunit B;protein_id=WP_000213098.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1703587 1704450 . + . ID=gene1670;Name=SH04_RS08365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08365;old_locus_tag=SH04_08360 NZ_CP010443.1 Protein Homology CDS 1703587 1704450 . + 0 ID=cds1610;Parent=gene1670;Dbxref=Genbank:WP_000534637.1;Name=WP_000534637.1;gbkey=CDS;product=dimethyl sulfoxide reductase subunit C;protein_id=WP_000534637.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1704485 1705111 . - . ID=gene1671;Name=SH04_RS08370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08370;old_locus_tag=SH04_08365 NZ_CP010443.1 Protein Homology CDS 1704485 1705111 . - 0 ID=cds1611;Parent=gene1671;Dbxref=Genbank:WP_000165879.1;Name=WP_000165879.1;gbkey=CDS;product=isochorismatase;protein_id=WP_000165879.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1705425 1706573 . + . ID=gene1672;Name=SH04_RS08375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08375;old_locus_tag=SH04_08370 NZ_CP010443.1 Protein Homology CDS 1705425 1706573 . + 0 ID=cds1612;Parent=gene1672;Dbxref=Genbank:WP_000109259.1;Name=WP_000109259.1;gbkey=CDS;product=MFS transporter inner membrane protein;protein_id=WP_000109259.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1706783 1708213 . + . ID=gene1673;Name=SH04_RS08380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08380;old_locus_tag=SH04_08375 NZ_CP010443.1 Protein Homology CDS 1706783 1708213 . + 0 ID=cds1613;Parent=gene1673;Dbxref=Genbank:WP_000918506.1;Name=WP_000918506.1;gbkey=CDS;product=inner membrane transporter YcaM;protein_id=WP_000918506.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1708214 1709122 . - . ID=gene1674;Name=SH04_RS08385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08385;old_locus_tag=SH04_08380 NZ_CP010443.1 Protein Homology CDS 1708214 1709122 . - 0 ID=cds1614;Parent=gene1674;Dbxref=Genbank:WP_001242684.1;Name=WP_001242684.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_001242684.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1709222 1709812 . + . ID=gene1675;Name=SH04_RS08390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08390;old_locus_tag=SH04_08385 NZ_CP010443.1 Protein Homology CDS 1709222 1709812 . + 0 ID=cds1615;Parent=gene1675;Dbxref=Genbank:WP_001190363.1;Name=WP_001190363.1;gbkey=CDS;product=NAD(P)H-dependent oxidoreductase;protein_id=WP_001190363.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1709894 1710634 . - . ID=gene1676;Name=pflA;gbkey=Gene;gene=pflA;gene_biotype=protein_coding;locus_tag=SH04_RS08395;old_locus_tag=SH04_08390 NZ_CP010443.1 Protein Homology CDS 1709894 1710634 . - 0 ID=cds1616;Parent=gene1676;Dbxref=Genbank:WP_000111043.1;Name=WP_000111043.1;Note=activates pyruvate formate-lyase 1 under anaerobic conditions;gbkey=CDS;gene=pflA;product=pyruvate formate-lyase 1-activating enzyme;protein_id=WP_000111043.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1710826 1713108 . - . ID=gene1677;Name=SH04_RS08400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08400;old_locus_tag=SH04_08395 NZ_CP010443.1 Protein Homology CDS 1710826 1713108 . - 0 ID=cds1617;Parent=gene1677;Dbxref=Genbank:WP_001292822.1;Name=WP_001292822.1;Note=formate acetyltransferase%3B catalyzes the formation of formate and acetyl-CoA from pyruvate;gbkey=CDS;product=formate acetyltransferase 1;protein_id=WP_001292822.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1713163 1714020 . - . ID=gene1678;Name=SH04_RS08405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08405;old_locus_tag=SH04_08400 NZ_CP010443.1 Protein Homology CDS 1713163 1714020 . - 0 ID=cds1618;Parent=gene1678;Dbxref=Genbank:WP_000642546.1;Name=WP_000642546.1;gbkey=CDS;product=formate transporter FocA;protein_id=WP_000642546.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1714426 1716186 . - . ID=gene1679;Name=SH04_RS08410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08410;old_locus_tag=SH04_08405 NZ_CP010443.1 Protein Homology CDS 1714426 1716186 . - 0 ID=cds1619;Parent=gene1679;Dbxref=Genbank:WP_001295344.1;Name=WP_001295344.1;gbkey=CDS;product=ribosomal protein S12 methylthiotransferase accessory factor YcaO;protein_id=WP_001295344.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1716316 1717008 . + . ID=gene1680;Name=SH04_RS08415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08415;old_locus_tag=SH04_08410 NZ_CP010443.1 Protein Homology CDS 1716316 1717008 . + 0 ID=cds1620;Parent=gene1680;Dbxref=Genbank:WP_000642849.1;Name=WP_000642849.1;gbkey=CDS;product=UPF0702 family inner membrane protein;protein_id=WP_000642849.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1717207 1718295 . + . ID=gene1681;Name=SH04_RS08420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08420;old_locus_tag=SH04_08415 NZ_CP010443.1 Protein Homology CDS 1717207 1718295 . + 0 ID=cds1621;Parent=gene1681;Dbxref=Genbank:WP_000057138.1;Name=WP_000057138.1;Note=catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate%3B catalyzes 4 phosphohydroxy L-threonine from 2-oxo 3 hydroxy 4- phosphobutanoate%3B required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine;gbkey=CDS;product=phosphoserine aminotransferase;protein_id=WP_000057138.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1718366 1719649 . + . ID=gene1682;Name=SH04_RS08425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08425;old_locus_tag=SH04_08420 NZ_CP010443.1 Protein Homology CDS 1718366 1719649 . + 0 ID=cds1622;Parent=gene1682;Dbxref=Genbank:WP_000445231.1;Name=WP_000445231.1;gbkey=CDS;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=WP_000445231.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1719818 1720582 . + . ID=gene1683;Name=SH04_RS08430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08430;old_locus_tag=SH04_08425 NZ_CP010443.1 Protein Homology CDS 1719818 1720582 . + 0 ID=cds1623;Parent=gene1683;Dbxref=Genbank:WP_001350496.1;Name=WP_001350496.1;gbkey=CDS;product=molecular chaperone;protein_id=WP_001350496.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1720755 1721438 . + . ID=gene1684;Name=cmk;gbkey=Gene;gene=cmk;gene_biotype=protein_coding;locus_tag=SH04_RS08435;old_locus_tag=SH04_08430 NZ_CP010443.1 Protein Homology CDS 1720755 1721438 . + 0 ID=cds1624;Parent=gene1684;Dbxref=Genbank:WP_000125016.1;Name=WP_000125016.1;Note=Catalyzes the formation of (d)CDP from ATP and (d)CMP;gbkey=CDS;gene=cmk;product=cytidylate kinase;protein_id=WP_000125016.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1721549 1723222 . + . ID=gene1685;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;locus_tag=SH04_RS08440;old_locus_tag=SH04_08435 NZ_CP010443.1 Protein Homology CDS 1721549 1723222 . + 0 ID=cds1625;Parent=gene1685;Dbxref=Genbank:WP_000140327.1;Name=WP_000140327.1;Note=in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit%3B autoregulates expression via a C-terminal domain%3B in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats%3B the S1 nucleic acid-binding domain is found associated with other proteins;gbkey=CDS;gene=rpsA;product=30S ribosomal protein S1;protein_id=WP_000140327.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1723382 1723666 . + . ID=gene1686;Name=ihfB;gbkey=Gene;gene=ihfB;gene_biotype=protein_coding;locus_tag=SH04_RS08445;old_locus_tag=SH04_08440 NZ_CP010443.1 Protein Homology CDS 1723382 1723666 . + 0 ID=cds1626;Parent=gene1686;Dbxref=Genbank:WP_000167336.1;Name=WP_000167336.1;Note=This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control;gbkey=CDS;gene=ihfB;product=integration host factor subunit beta;protein_id=WP_000167336.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1723874 1726138 . + . ID=gene1687;Name=SH04_RS08450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08450;old_locus_tag=SH04_08445 NZ_CP010443.1 Protein Homology CDS 1723874 1726138 . + 0 ID=cds1627;Parent=gene1687;Dbxref=Genbank:WP_000705764.1;Name=WP_000705764.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000705764.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1726175 1727923 . + . ID=gene1688;Name=SH04_RS08455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08455;old_locus_tag=SH04_08450 NZ_CP010443.1 Protein Homology CDS 1726175 1727923 . + 0 ID=cds1628;Parent=gene1688;Dbxref=Genbank:WP_000551270.1;Name=WP_000551270.1;Note=involved in the transport of lipid A across the inner membrane;gbkey=CDS;product=lipid A export ATP-binding/permease MsbA;protein_id=WP_000551270.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1727920 1728906 . + . ID=gene1689;Name=lpxK;gbkey=Gene;gene=lpxK;gene_biotype=protein_coding;locus_tag=SH04_RS08460;old_locus_tag=SH04_08455 NZ_CP010443.1 Protein Homology CDS 1727920 1728906 . + 0 ID=cds1629;Parent=gene1689;Dbxref=Genbank:WP_000570544.1;Name=WP_000570544.1;Note=transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1%2C4'-bis-phosphate;gbkey=CDS;gene=lpxK;product=tetraacyldisaccharide 4'-kinase;protein_id=WP_000570544.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1728943 1730175 . + . ID=gene1690;Name=SH04_RS08465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08465;old_locus_tag=SH04_08460 NZ_CP010443.1 Protein Homology CDS 1728943 1730175 . + 0 ID=cds1630;Parent=gene1690;Dbxref=Genbank:WP_000056538.1;Name=WP_000056538.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000056538.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1730227 1730409 . + . ID=gene1691;Name=SH04_RS08470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08470;old_locus_tag=SH04_08465 NZ_CP010443.1 Protein Homology CDS 1730227 1730409 . + 0 ID=cds1631;Parent=gene1691;Dbxref=Genbank:WP_000350058.1;Name=WP_000350058.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000350058.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1730406 1731152 . + . ID=gene1692;Name=SH04_RS08475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08475;old_locus_tag=SH04_08470 NZ_CP010443.1 Protein Homology CDS 1730406 1731152 . + 0 ID=cds1632;Parent=gene1692;Dbxref=Genbank:WP_000011603.1;Name=WP_000011603.1;Note=CMP-2-keto-3-deoxyoctulosonic acid synthetase%3B catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS;gbkey=CDS;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=WP_000011603.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1731306 1732199 . + . ID=gene1693;Name=SH04_RS08480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08480;old_locus_tag=SH04_08475 NZ_CP010443.1 Protein Homology CDS 1731306 1732199 . + 0 ID=cds1633;Parent=gene1693;Dbxref=Genbank:WP_000436922.1;Name=WP_000436922.1;gbkey=CDS;product=protein kinase-like domain protein;protein_id=WP_000436922.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1732176 1732955 . - . ID=gene1694;Name=SH04_RS08485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08485;old_locus_tag=SH04_08480 NZ_CP010443.1 Protein Homology CDS 1732176 1732955 . - 0 ID=cds1634;Parent=gene1694;Dbxref=Genbank:WP_000899600.1;Name=WP_000899600.1;gbkey=CDS;product=envelope biogenesis factor ElyC;protein_id=WP_000899600.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1733091 1733876 . + . ID=gene1695;Name=SH04_RS08490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08490;old_locus_tag=SH04_08485 NZ_CP010443.1 Protein Homology CDS 1733091 1733876 . + 0 ID=cds1635;Parent=gene1695;Dbxref=Genbank:WP_001298300.1;Name=WP_001298300.1;gbkey=CDS;product=protein SmtA;protein_id=WP_001298300.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1733873 1735195 . + . ID=gene1696;Name=SH04_RS08495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08495;old_locus_tag=SH04_08490 NZ_CP010443.1 Protein Homology CDS 1733873 1735195 . + 0 ID=cds1636;Parent=gene1696;Dbxref=Genbank:WP_001288850.1;Name=WP_001288850.1;Note=acts with MukB and MukE to condense the chromosome and allow for segregation during cell division;gbkey=CDS;product=chromosome partition protein MukF;protein_id=WP_001288850.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1735176 1735880 . + . ID=gene1697;Name=SH04_RS08500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08500;old_locus_tag=SH04_08495 NZ_CP010443.1 Protein Homology CDS 1735176 1735880 . + 0 ID=cds1637;Parent=gene1697;Dbxref=Genbank:WP_001295347.1;Name=WP_001295347.1;Note=acts with MukB and MukF to condense the chromosome and allow for segregation during cell division;gbkey=CDS;product=chromosome partition protein MukE;protein_id=WP_001295347.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1735880 1740340 . + . ID=gene1698;Name=mukB;gbkey=Gene;gene=mukB;gene_biotype=protein_coding;locus_tag=SH04_RS08505;old_locus_tag=SH04_08500 NZ_CP010443.1 Protein Homology CDS 1735880 1740340 . + 0 ID=cds1638;Parent=gene1698;Dbxref=Genbank:WP_000572698.1;Name=WP_000572698.1;Note=SMC (structural maintenance of chromosomes) family of proteins%3B involved in chromosome condensatin and partitioning%3B forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ%3B mutations result in cell division defects;gbkey=CDS;gene=mukB;product=chromosome partition protein MukB;protein_id=WP_000572698.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1740601 1742448 . + . ID=gene1699;Name=SH04_RS08510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08510;old_locus_tag=SH04_08505 NZ_CP010443.1 Protein Homology CDS 1740601 1742448 . + 0 ID=cds1639;Parent=gene1699;Dbxref=Genbank:WP_000925969.1;Name=WP_000925969.1;Note=catalyzes the formation of a meso-diaminopimelyl- meso-diaminopimelyl crosslink;gbkey=CDS;product=transpeptidase;protein_id=WP_000925969.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1742629 1743177 . + . ID=gene1700;Name=SH04_RS08515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08515;old_locus_tag=SH04_08510 NZ_CP010443.1 Protein Homology CDS 1742629 1743177 . + 0 ID=cds1640;Parent=gene1700;Dbxref=Genbank:WP_001295932.1;Name=WP_001295932.1;gbkey=CDS;product=M15A protease-related family periplasmic protein;protein_id=WP_001295932.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1743204 1743851 . + . ID=gene1701;Name=SH04_RS08520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08520;old_locus_tag=SH04_08515 NZ_CP010443.1 Protein Homology CDS 1743204 1743851 . + 0 ID=cds1641;Parent=gene1701;Dbxref=Genbank:WP_001109486.1;Name=WP_001109486.1;gbkey=CDS;product=metal-binding enzyme;protein_id=WP_001109486.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1744073 1745263 . - . ID=gene1702;Name=SH04_RS08525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08525;old_locus_tag=SH04_08520 NZ_CP010443.1 Protein Homology CDS 1744073 1745263 . - 0 ID=cds1642;Parent=gene1702;Dbxref=Genbank:WP_000462687.1;Name=WP_000462687.1;gbkey=CDS;product=aspartate aminotransferase;protein_id=WP_000462687.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1745262 1745432 . + . ID=gene1703;Name=SH04_RS08530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08530;old_locus_tag=SH04_08525 NZ_CP010443.1 Protein Homology CDS 1745262 1745432 . + 0 ID=cds1643;Parent=gene1703;Dbxref=Genbank:WP_000196604.1;Name=WP_000196604.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000196604.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1745448 1746536 . - . ID=gene1704;Name=SH04_RS08535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08535;old_locus_tag=SH04_08530 NZ_CP010443.1 Protein Homology CDS 1745448 1746536 . - 0 ID=cds1644;Parent=gene1704;Dbxref=Genbank:WP_000977920.1;Name=WP_000977920.1;gbkey=CDS;product=outer membrane protein F;protein_id=WP_000977920.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1747139 1748539 . - . ID=gene1705;Name=SH04_RS08540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08540;old_locus_tag=SH04_08535 NZ_CP010443.1 Protein Homology CDS 1747139 1748539 . - 0 ID=cds1645;Parent=gene1705;Dbxref=Genbank:WP_000117881.1;Name=WP_000117881.1;gbkey=CDS;product=asparagine--tRNA ligase;protein_id=WP_000117881.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1748708 1749910 . - . ID=gene1706;Name=SH04_RS08545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08545;old_locus_tag=SH04_08540 NZ_CP010443.1 Protein Homology CDS 1748708 1749910 . - 0 ID=cds1646;Parent=gene1706;Dbxref=Genbank:WP_001307697.1;Name=WP_001307697.1;Note=catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate;gbkey=CDS;product=nicotinate phosphoribosyltransferase;protein_id=WP_001307697.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1750176 1752788 . + . ID=gene1707;Name=pepN;gbkey=Gene;gene=pepN;gene_biotype=protein_coding;locus_tag=SH04_RS08550;old_locus_tag=SH04_08545 NZ_CP010443.1 Protein Homology CDS 1750176 1752788 . + 0 ID=cds1647;Parent=gene1707;Dbxref=Genbank:WP_000193841.1;Name=WP_000193841.1;gbkey=CDS;gene=pepN;product=aminopeptidase N;protein_id=WP_000193841.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1752831 1753598 . - . ID=gene1708;Name=ssuB;gbkey=Gene;gene=ssuB;gene_biotype=protein_coding;locus_tag=SH04_RS08555;old_locus_tag=SH04_08550 NZ_CP010443.1 Protein Homology CDS 1752831 1753598 . - 0 ID=cds1648;Parent=gene1708;Dbxref=Genbank:WP_001090506.1;Name=WP_001090506.1;Note=part of the ABC type transport system SsuABC for aliphatic sulfonates%3B with SsuA being the periplasmic substrate-binding subunit%2C SsuB the ATP-binding subunit and SsuC the permease;gbkey=CDS;gene=ssuB;product=aliphatic sulfonate ABC transporter ATP-binding protein;protein_id=WP_001090506.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1753595 1754386 . - . ID=gene1709;Name=ssuC;gbkey=Gene;gene=ssuC;gene_biotype=protein_coding;locus_tag=SH04_RS08560;old_locus_tag=SH04_08555 NZ_CP010443.1 Protein Homology CDS 1753595 1754386 . - 0 ID=cds1649;Parent=gene1709;Dbxref=Genbank:WP_000235203.1;Name=WP_000235203.1;Note=part of the ABC type transport system for alkanesulfonate SsuABC%3B SsuB the ATP-binding subunit and SsuC the permease;gbkey=CDS;gene=ssuC;product=aliphatic sulfonate ABC transporter permease;protein_id=WP_000235203.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1754397 1755542 . - . ID=gene1710;Name=SH04_RS08565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08565;old_locus_tag=SH04_08560 NZ_CP010443.1 Protein Homology CDS 1754397 1755542 . - 0 ID=cds1650;Parent=gene1710;Dbxref=Genbank:WP_000056006.1;Name=WP_000056006.1;Note=catalyzes the release of sulfite from alkanesulfonates;gbkey=CDS;product=alkanesulfonate monooxygenase;protein_id=WP_000056006.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1755539 1756498 . - . ID=gene1711;Name=SH04_RS08570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08570;old_locus_tag=SH04_08565 NZ_CP010443.1 Protein Homology CDS 1755539 1756498 . - 0 ID=cds1651;Parent=gene1711;Dbxref=Genbank:WP_001244308.1;Name=WP_001244308.1;Note=part of the ABC type transport system SsuABC for aliphatic sulfonates%3B with SsuA being the periplasmic subunit SsuB the ATP-binding subunit and SsuC the permease;gbkey=CDS;product=aliphatic sulfonate ABC transporter substrate-binding protein;protein_id=WP_001244308.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1756491 1757066 . - . ID=gene1712;Name=SH04_RS08575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08575;old_locus_tag=SH04_08570 NZ_CP010443.1 Protein Homology CDS 1756491 1757066 . - 0 ID=cds1652;Parent=gene1712;Dbxref=Genbank:WP_001263933.1;Name=WP_001263933.1;gbkey=CDS;product=FMN reductase;protein_id=WP_001263933.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1757422 1757961 . + . ID=gene1713;Name=SH04_RS08580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08580;old_locus_tag=SH04_08575 NZ_CP010443.1 Protein Homology CDS 1757422 1757961 . + 0 ID=cds1653;Parent=gene1713;Dbxref=Genbank:WP_000750293.1;Name=WP_000750293.1;gbkey=CDS;product=fimbrial subunit ElfA;protein_id=WP_000750293.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1758071 1758745 . + . ID=gene1714;Name=SH04_RS08585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08585;old_locus_tag=SH04_08580 NZ_CP010443.1 Protein Homology CDS 1758071 1758745 . + 0 ID=cds1654;Parent=gene1714;Dbxref=Genbank:WP_000218743.1;Name=WP_000218743.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_000218743.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1758770 1761370 . + . ID=gene1715;Name=SH04_RS08590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08590;old_locus_tag=SH04_08585 NZ_CP010443.1 Protein Homology CDS 1758770 1761370 . + 0 ID=cds1655;Parent=gene1715;Dbxref=Genbank:WP_000286312.1;Name=WP_000286312.1;Note=involved in fimbria production;gbkey=CDS;product=usher protein ElfC;protein_id=WP_000286312.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1761361 1762431 . + . ID=gene1716;Name=SH04_RS08595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08595;old_locus_tag=SH04_08590 NZ_CP010443.1 Protein Homology CDS 1761361 1762431 . + 0 ID=cds1656;Parent=gene1716;Dbxref=Genbank:WP_001165668.1;Name=WP_001165668.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_001165668.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1762533 1762985 . + . ID=gene1717;Name=SH04_RS08600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08600;old_locus_tag=SH04_08595 NZ_CP010443.1 Protein Homology CDS 1762533 1762985 . + 0 ID=cds1657;Parent=gene1717;Dbxref=Genbank:WP_000548456.1;Name=WP_000548456.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_000548456.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1762993 1763508 . + . ID=gene1718;Name=SH04_RS08605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08605;old_locus_tag=SH04_08600 NZ_CP010443.1 Protein Homology CDS 1762993 1763508 . + 0 ID=cds1658;Parent=gene1718;Dbxref=Genbank:WP_000919497.1;Name=WP_000919497.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_000919497.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1763501 1764211 . + . ID=gene1719;Name=SH04_RS08610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08610;old_locus_tag=SH04_08605 NZ_CP010443.1 Protein Homology CDS 1763501 1764211 . + 0 ID=cds1659;Parent=gene1719;Dbxref=Genbank:WP_001307699.1;Name=WP_001307699.1;gbkey=CDS;product=periplasmic pilin chaperone;protein_id=WP_001307699.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1764322 1765332 . + . ID=gene1720;Name=SH04_RS08615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08615;old_locus_tag=SH04_08610 NZ_CP010443.1 Protein Homology CDS 1764322 1765332 . + 0 ID=cds1660;Parent=gene1720;Dbxref=Genbank:WP_001295352.1;Name=WP_001295352.1;Note=catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway%3B uses a flavin nucleotide as an essential cofactor%3B class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus%2C which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors;gbkey=CDS;product=dihydroorotate dehydrogenase;protein_id=WP_001295352.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1765506 1766048 . + . ID=gene1721;Name=SH04_RS08620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08620;old_locus_tag=SH04_08615 NZ_CP010443.1 Protein Homology CDS 1765506 1766048 . + 0 ID=cds1661;Parent=gene1721;Dbxref=Genbank:WP_001295353.1;Name=WP_001295353.1;gbkey=CDS;product=cell division protein ZapC;protein_id=WP_001295353.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1766045 1767154 . - . ID=gene1722;Name=SH04_RS08625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08625;old_locus_tag=SH04_08620 NZ_CP010443.1 Protein Homology CDS 1766045 1767154 . - 0 ID=cds1662;Parent=gene1722;Dbxref=Genbank:WP_000212426.1;Name=WP_000212426.1;gbkey=CDS;product=6-N-hydroxylaminopurine detoxification oxidoreductase;protein_id=WP_000212426.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1767398 1769506 . + . ID=gene1723;Name=rlmL;gbkey=Gene;gene=rlmL;gene_biotype=protein_coding;locus_tag=SH04_RS08630;old_locus_tag=SH04_08625 NZ_CP010443.1 Protein Homology CDS 1767398 1769506 . + 0 ID=cds1663;Parent=gene1723;Dbxref=Genbank:WP_001086539.1;Name=WP_001086539.1;Note=catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA;gbkey=CDS;gene=rlmL;product=ribosomal RNA large subunit methyltransferase K/L;protein_id=WP_001086539.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1769518 1771425 . + . ID=gene1724;Name=SH04_RS08635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08635;old_locus_tag=SH04_08630 NZ_CP010443.1 Protein Homology CDS 1769518 1771425 . + 0 ID=cds1664;Parent=gene1724;Dbxref=Genbank:WP_000053099.1;Name=WP_000053099.1;Note=Uup%3B in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity%3B mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_000053099.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1771555 1772808 . + . ID=gene1725;Name=SH04_RS08640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08640;old_locus_tag=SH04_08635 NZ_CP010443.1 Protein Homology CDS 1771555 1772808 . + 0 ID=cds1665;Parent=gene1725;Dbxref=Genbank:WP_000333176.1;Name=WP_000333176.1;gbkey=CDS;product=paraquat-inducible protein A;protein_id=WP_000333176.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1772813 1774453 . + . ID=gene1726;Name=SH04_RS08645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08645;old_locus_tag=SH04_08640 NZ_CP010443.1 Protein Homology CDS 1772813 1774453 . + 0 ID=cds1666;Parent=gene1726;Dbxref=Genbank:WP_000445533.1;Name=WP_000445533.1;gbkey=CDS;product=paraquat-inducible protein B;protein_id=WP_000445533.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1774450 1775013 . + . ID=gene1727;Name=SH04_RS08650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08650;old_locus_tag=SH04_08645 NZ_CP010443.1 Protein Homology CDS 1774450 1775013 . + 0 ID=cds1667;Parent=gene1727;Dbxref=Genbank:WP_000759120.1;Name=WP_000759120.1;gbkey=CDS;product=DUF330 domain-containing protein;protein_id=WP_000759120.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1775269 1775436 . + . ID=gene1728;Name=SH04_RS08655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08655;old_locus_tag=SH04_08650 NZ_CP010443.1 Protein Homology CDS 1775269 1775436 . + 0 ID=cds1668;Parent=gene1728;Dbxref=Genbank:WP_000828648.1;Name=WP_000828648.1;gbkey=CDS;product=ribosome modulation factor;protein_id=WP_000828648.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1775506 1776024 . - . ID=gene1729;Name=SH04_RS08660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08660;old_locus_tag=SH04_08655 NZ_CP010443.1 Protein Homology CDS 1775506 1776024 . - 0 ID=cds1669;Parent=gene1729;Dbxref=Genbank:WP_000227927.1;Name=WP_000227927.1;Note=catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2%2C3-decenoyl-ACP or 3%2C4-decenoyl-ACP;gbkey=CDS;product=3-hydroxydecanoyl-ACP dehydratase;protein_id=WP_000227927.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1776093 1777853 . - . ID=gene1730;Name=SH04_RS08665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08665;old_locus_tag=SH04_08660 NZ_CP010443.1 Protein Homology CDS 1776093 1777853 . - 0 ID=cds1670;Parent=gene1730;Dbxref=Genbank:WP_000156518.1;Name=WP_000156518.1;gbkey=CDS;product=peptidase;protein_id=WP_000156518.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1778039 1778491 . + . ID=gene1731;Name=SH04_RS08670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08670;old_locus_tag=SH04_08665 NZ_CP010443.1 Protein Homology CDS 1778039 1778491 . + 0 ID=cds1671;Parent=gene1731;Dbxref=Genbank:WP_000877161.1;Name=WP_000877161.1;gbkey=CDS;product=macrodomain Ter protein;protein_id=WP_000877161.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1778567 1779607 . - . ID=gene1732;Name=SH04_RS08675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08675;old_locus_tag=SH04_08670 NZ_CP010443.1 Protein Homology CDS 1778567 1779607 . - 0 ID=cds1672;Parent=gene1732;Dbxref=Genbank:WP_000750416.1;Name=WP_000750416.1;Note=OmpA is believed to be a porin%2C involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli%2C and it is known to play a role as a phage receptor%2C a mediator of F-factor dependent conjugation%2C and in maintaining the structural shape of the outer membrane%3B 3a%3B II*%3B G%3B d;gbkey=CDS;product=outer membrane protein A;protein_id=WP_000750416.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1779810 1779980 . + . ID=gene1733;Name=SH04_RS08680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08680;old_locus_tag=SH04_08675 NZ_CP010443.1 Protein Homology CDS 1779810 1779980 . + 0 ID=cds1673;Parent=gene1733;Dbxref=Genbank:WP_032083270.1;Name=WP_032083270.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032083270.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1779964 1780473 . - . ID=gene1734;Name=SH04_RS08685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08685;old_locus_tag=SH04_08680 NZ_CP010443.1 Protein Homology CDS 1779964 1780473 . - 0 ID=cds1674;Parent=gene1734;Dbxref=Genbank:WP_000288710.1;Name=WP_000288710.1;gbkey=CDS;product=cell division inhibitor SulA;protein_id=WP_000288710.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1780692 1781321 . + . ID=gene1735;Name=SH04_RS08690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08690;old_locus_tag=SH04_08685 NZ_CP010443.1 Protein Homology CDS 1780692 1781321 . + 0 ID=cds1675;Parent=gene1735;Dbxref=Genbank:WP_000839153.1;Name=WP_000839153.1;gbkey=CDS;product=protein Sxy;protein_id=WP_000839153.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1781284 1783437 . - . ID=gene1736;Name=SH04_RS08695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08695;old_locus_tag=SH04_08690 NZ_CP010443.1 Protein Homology CDS 1781284 1783437 . - 0 ID=cds1676;Parent=gene1736;Dbxref=Genbank:WP_001382153.1;Name=WP_001382153.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001382153.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1783456 1783902 . - . ID=gene1737;Name=SH04_RS08700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08700;old_locus_tag=SH04_08695 NZ_CP010443.1 Protein Homology CDS 1783456 1783902 . - 0 ID=cds1677;Parent=gene1737;Dbxref=Genbank:WP_001261235.1;Name=WP_001261235.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001261235.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1784025 1786079 . + . ID=gene1738;Name=helD;gbkey=Gene;gene=helD;gene_biotype=protein_coding;locus_tag=SH04_RS08705;old_locus_tag=SH04_08700 NZ_CP010443.1 Protein Homology CDS 1784025 1786079 . + 0 ID=cds1678;Parent=gene1738;Dbxref=Genbank:WP_001295354.1;Name=WP_001295354.1;Note=catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand;gbkey=CDS;gene=helD;product=helicase IV;protein_id=WP_001295354.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1786111 1786569 . - . ID=gene1739;Name=mgsA;gbkey=Gene;gene=mgsA;gene_biotype=protein_coding;locus_tag=SH04_RS08710;old_locus_tag=SH04_08705 NZ_CP010443.1 Protein Homology CDS 1786111 1786569 . - 0 ID=cds1679;Parent=gene1739;Dbxref=Genbank:WP_000424181.1;Name=WP_000424181.1;Note=catalyzes the formation of methylglyoxal from glycerone phosphate;gbkey=CDS;gene=mgsA;product=methylglyoxal synthase;protein_id=WP_000424181.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1786665 1787327 . - . ID=gene1740;Name=SH04_RS08715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08715;old_locus_tag=SH04_08710 NZ_CP010443.1 Protein Homology CDS 1786665 1787327 . - 0 ID=cds1680;Parent=gene1740;Dbxref=Genbank:WP_000847791.1;Name=WP_000847791.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000847791.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1787367 1787537 . - . ID=gene1741;Name=SH04_RS08720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08720;old_locus_tag=SH04_08715 NZ_CP010443.1 Protein Homology CDS 1787367 1787537 . - 0 ID=cds1681;Parent=gene1741;Dbxref=Genbank:WP_001301416.1;Name=WP_001301416.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001301416.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1787500 1787913 . + . ID=gene1742;Name=SH04_RS08725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08725;old_locus_tag=SH04_08720 NZ_CP010443.1 Protein Homology CDS 1787500 1787913 . + 0 ID=cds1682;Parent=gene1742;Dbxref=Genbank:WP_001301418.1;Name=WP_001301418.1;gbkey=CDS;product=CoA-binding protein;protein_id=WP_001301418.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1787958 1788275 . - . ID=gene1743;Name=SH04_RS08730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08730;old_locus_tag=SH04_08725 NZ_CP010443.1 Protein Homology CDS 1787958 1788275 . - 0 ID=cds1683;Parent=gene1743;Dbxref=Genbank:WP_001295356.1;Name=WP_001295356.1;gbkey=CDS;product=heat-shock protein HspQ;protein_id=WP_001295356.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1788333 1789523 . - . ID=gene1744;Name=SH04_RS08735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08735;old_locus_tag=SH04_08730 NZ_CP010443.1 Protein Homology CDS 1788333 1789523 . - 0 ID=cds1684;Parent=gene1744;Dbxref=Genbank:WP_000116297.1;Name=WP_000116297.1;Note=SAM-dependent%3Bcatalyzes the methylation of cytosine at position 1962 of the 23S rRNA;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase I;protein_id=WP_000116297.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1789618 1789896 . + . ID=gene1745;Name=SH04_RS08740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08740;old_locus_tag=SH04_08735 NZ_CP010443.1 Protein Homology CDS 1789618 1789896 . + 0 ID=cds1685;Parent=gene1745;Dbxref=Genbank:WP_000048252.1;Name=WP_000048252.1;Note=catalyzes the hydrolysis of acylphosphate;gbkey=CDS;product=acylphosphatase;protein_id=WP_000048252.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1789893 1790222 . - . ID=gene1746;Name=SH04_RS08745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08745;old_locus_tag=SH04_08740 NZ_CP010443.1 Protein Homology CDS 1789893 1790222 . - 0 ID=cds1686;Parent=gene1746;Dbxref=Genbank:WP_000904442.1;Name=WP_000904442.1;Note=transfers sulfur from TusBCD complex to MnmA%3B involved in thiouridation of U34 position of some tRNAs;gbkey=CDS;product=sulfurtransferase TusE;protein_id=WP_000904442.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1790313 1790972 . - . ID=gene1747;Name=SH04_RS08750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08750;old_locus_tag=SH04_08745 NZ_CP010443.1 Protein Homology CDS 1790313 1790972 . - 0 ID=cds1687;Parent=gene1747;Dbxref=Genbank:WP_000375136.1;Name=WP_000375136.1;Note=binds to the HflBKC complex which modulates FtsH activity;gbkey=CDS;product=Modulator of FtsH protease inner membrane protein;protein_id=WP_000375136.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1791179 1791266 . - . ID=gene1748;Name=SH04_RS08755;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS08755;old_locus_tag=SH04_08750 NZ_CP010443.1 tRNAscan-SE tRNA 1791179 1791266 . - . ID=rna60;Parent=gene1748;anticodon=(pos:complement(1791230..1791232));gbkey=tRNA;product=tRNA-Ser NZ_CP010443.1 tRNAscan-SE exon 1791179 1791266 . - . ID=id119;Parent=rna60;anticodon=(pos:complement(1791230..1791232));gbkey=tRNA;product=tRNA-Ser NZ_CP010443.1 RefSeq gene 1791693 1792811 . + . ID=gene1749;Name=SH04_RS08760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08760;old_locus_tag=SH04_08755 NZ_CP010443.1 Protein Homology CDS 1791693 1792811 . + 0 ID=cds1688;Parent=gene1749;Dbxref=Genbank:WP_001058323.1;Name=WP_001058323.1;gbkey=CDS;product=hydrogenase-1 small chain;protein_id=WP_001058323.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1792808 1794601 . + . ID=gene1750;Name=SH04_RS08765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08765;old_locus_tag=SH04_08760 NZ_CP010443.1 Protein Homology CDS 1792808 1794601 . + 0 ID=cds1689;Parent=gene1750;Dbxref=Genbank:WP_000107384.1;Name=WP_000107384.1;gbkey=CDS;product=hydrogenase-1 large chain;protein_id=WP_000107384.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1794620 1795327 . + . ID=gene1751;Name=SH04_RS08770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08770;old_locus_tag=SH04_08765 NZ_CP010443.1 Protein Homology CDS 1794620 1795327 . + 0 ID=cds1690;Parent=gene1751;Dbxref=Genbank:WP_001186424.1;Name=WP_001186424.1;gbkey=CDS;product=Ni/Fe-hydrogenase B-type cytochrome subunit;protein_id=WP_001186424.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1795324 1795911 . + . ID=gene1752;Name=SH04_RS08775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08775;old_locus_tag=SH04_08770 NZ_CP010443.1 Protein Homology CDS 1795324 1795911 . + 0 ID=cds1691;Parent=gene1752;Dbxref=Genbank:WP_000003671.1;Name=WP_000003671.1;Note=HyaD%3B endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1);gbkey=CDS;product=hydrogenase 1 maturation protease;protein_id=WP_000003671.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1795908 1796306 . + . ID=gene1753;Name=SH04_RS08780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08780;old_locus_tag=SH04_08775 NZ_CP010443.1 Protein Homology CDS 1795908 1796306 . + 0 ID=cds1692;Parent=gene1753;Dbxref=Genbank:WP_000063978.1;Name=WP_000063978.1;Note=involved in processing hydrogenase proteins HyaA and HyaB;gbkey=CDS;product=hydrogenase-1 operon protein HyaE;protein_id=WP_000063978.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1796303 1797160 . + . ID=gene1754;Name=SH04_RS08785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08785;old_locus_tag=SH04_08780 NZ_CP010443.1 Protein Homology CDS 1796303 1797160 . + 0 ID=cds1693;Parent=gene1754;Dbxref=Genbank:WP_000004899.1;Name=WP_000004899.1;gbkey=CDS;product=hydrogenase-1 operon protein HyaF;protein_id=WP_000004899.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1797294 1798838 . + . ID=gene1755;Name=SH04_RS08790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08790;old_locus_tag=SH04_08785 NZ_CP010443.1 Protein Homology CDS 1797294 1798838 . + 0 ID=cds1694;Parent=gene1755;Dbxref=Genbank:WP_000263582.1;Name=WP_000263582.1;Note=part of the aerobic respiratory chain%3B catalyzes the ubiquinol to ubiquinone;gbkey=CDS;product=cytochrome bd-II ubiquinol oxidase subunit 1;protein_id=WP_000263582.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1798850 1799986 . + . ID=gene1756;Name=SH04_RS08795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08795;old_locus_tag=SH04_08790 NZ_CP010443.1 Protein Homology CDS 1798850 1799986 . + 0 ID=cds1695;Parent=gene1756;Dbxref=Genbank:WP_000460803.1;Name=WP_000460803.1;gbkey=CDS;product=cytochrome bd-II ubiquinol oxidase subunit 2;protein_id=WP_000460803.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1799999 1800091 . + . ID=gene1757;Name=SH04_RS08800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08800;old_locus_tag=SH04_08795 NZ_CP010443.1 Protein Homology CDS 1799999 1800091 . + 0 ID=cds1696;Parent=gene1757;Dbxref=Genbank:WP_000270305.1;Name=WP_000270305.1;gbkey=CDS;product=cytochrome bd-II oxidase subunit;protein_id=WP_000270305.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1800171 1801469 . + . ID=gene1758;Name=SH04_RS08805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08805;old_locus_tag=SH04_08800 NZ_CP010443.1 Protein Homology CDS 1800171 1801469 . + 0 ID=cds1697;Parent=gene1758;Dbxref=Genbank:WP_001300464.1;Name=WP_001300464.1;gbkey=CDS;product=periplasmic AppA protein;protein_id=WP_001300464.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1801584 1803764 . - . ID=gene1759;Name=SH04_RS08810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08810;old_locus_tag=SH04_08805 NZ_CP010443.1 Protein Homology CDS 1801584 1803764 . - 0 ID=cds1698;Parent=gene1759;Dbxref=Genbank:WP_000208650.1;Name=WP_000208650.1;gbkey=CDS;product=tyrosine-protein kinase etk;protein_id=WP_000208650.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1803784 1804230 . - . ID=gene1760;Name=SH04_RS08815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08815;old_locus_tag=SH04_08810 NZ_CP010443.1 Protein Homology CDS 1803784 1804230 . - 0 ID=cds1699;Parent=gene1760;Dbxref=Genbank:WP_000057871.1;Name=WP_000057871.1;Note=Wzb shows phosphatase activity towards the autophosphorylated Wzc protein%2C which induces colanic acid biosynthesis%3B catalyzes the phosphorylation of UDP-glucose dehydrogenase%2C an enzyme involved in colanic acid biosynthesis;gbkey=CDS;product=protein-tyrosine phosphatase;protein_id=WP_000057871.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1804218 1805357 . - . ID=gene1761;Name=SH04_RS08820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08820;old_locus_tag=SH04_08815 NZ_CP010443.1 Protein Homology CDS 1804218 1805357 . - 0 ID=cds1700;Parent=gene1761;Dbxref=Genbank:WP_001295357.1;Name=WP_001295357.1;Note=required for the translocation of capsular polysaccharide through the outer membrane;gbkey=CDS;product=O-antigen capsule outer membrane auxillary protein export channel;protein_id=WP_001295357.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1805403 1807499 . - . ID=gene1762;Name=SH04_RS08825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08825;old_locus_tag=SH04_08820 NZ_CP010443.1 Protein Homology CDS 1805403 1807499 . - 0 ID=cds1701;Parent=gene1762;Dbxref=Genbank:WP_000742328.1;Name=WP_000742328.1;gbkey=CDS;product=O-antigen capsule production periplasmic protein;protein_id=WP_000742328.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1807499 1808245 . - . ID=gene1763;Name=SH04_RS08830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08830;old_locus_tag=SH04_08825 NZ_CP010443.1 Protein Homology CDS 1807499 1808245 . - 0 ID=cds1702;Parent=gene1763;Dbxref=Genbank:WP_001038079.1;Name=WP_001038079.1;gbkey=CDS;product=O-antigen capsule production periplasmic protein;protein_id=WP_001038079.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1808242 1808886 . - . ID=gene1764;Name=SH04_RS08835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08835;old_locus_tag=SH04_08830 NZ_CP010443.1 Protein Homology CDS 1808242 1808886 . - 0 ID=cds1703;Parent=gene1764;Dbxref=Genbank:WP_001247610.1;Name=WP_001247610.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001247610.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1808993 1809298 . - . ID=gene1765;Name=SH04_RS08840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08840;old_locus_tag=SH04_08835 NZ_CP010443.1 Protein Homology CDS 1808993 1809298 . - 0 ID=cds1704;Parent=gene1765;Dbxref=Genbank:WP_001295358.1;Name=WP_001295358.1;gbkey=CDS;product=threonine-rich inner membrane protein GfcA;protein_id=WP_001295358.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1809332 1810103 . + . ID=id120;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1809420 1809635 . - . ID=gene1766;Name=SH04_RS08845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08845;old_locus_tag=SH04_08840 NZ_CP010443.1 Protein Homology CDS 1809420 1809635 . - 0 ID=cds1705;Parent=gene1766;Dbxref=Genbank:WP_001360189.1;Name=WP_001360189.1;gbkey=CDS;product=transposase;protein_id=WP_001360189.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1809581 1810084 . + . ID=gene1767;Name=SH04_RS08850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08850;old_locus_tag=SH04_08845 NZ_CP010443.1 Protein Homology CDS 1809581 1810084 . + 0 ID=cds1706;Parent=gene1767;Dbxref=Genbank:WP_001119339.1;Name=WP_001119339.1;gbkey=CDS;product=Insertion element IS1 4 protein InsB;protein_id=WP_001119339.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1810517 1810729 . - . ID=gene1768;Name=SH04_RS08855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08855;old_locus_tag=SH04_08850 NZ_CP010443.1 Protein Homology CDS 1810517 1810729 . - 0 ID=cds1707;Parent=gene1768;Dbxref=Genbank:WP_000087763.1;Name=WP_000087763.1;gbkey=CDS;product=cold-shock protein CspH;protein_id=WP_000087763.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1811015 1811227 . + . ID=gene1769;Name=SH04_RS08860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08860;old_locus_tag=SH04_08855 NZ_CP010443.1 Protein Homology CDS 1811015 1811227 . + 0 ID=cds1708;Parent=gene1769;Dbxref=Genbank:WP_000066490.1;Name=WP_000066490.1;gbkey=CDS;product=cold-shock protein CspG;protein_id=WP_000066490.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1811401 1811631 . + . ID=gene1770;Name=SH04_RS08865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08865;old_locus_tag=SH04_08860 NZ_CP010443.1 Protein Homology CDS 1811401 1811631 . + 0 ID=cds1709;Parent=gene1770;Dbxref=Genbank:WP_001309400.1;Name=WP_001309400.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_001309400.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1811621 1811794 . + . ID=gene1771;Name=SH04_RS08870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08870;old_locus_tag=SH04_08865 NZ_CP010443.1 Protein Homology CDS 1811621 1811794 . + 0 ID=cds1710;Parent=gene1771;Dbxref=Genbank:WP_001019197.1;Name=WP_001019197.1;gbkey=CDS;product=protein GnsA;protein_id=WP_001019197.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1811843 1812916 . - . ID=gene1772;Name=SH04_RS08875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08875;old_locus_tag=SH04_08870 NZ_CP010443.1 Protein Homology CDS 1811843 1812916 . - 0 ID=cds1711;Parent=gene1772;Dbxref=Genbank:WP_000829662.1;Name=WP_000829662.1;gbkey=CDS;product=4Fe-4S membrane protein;protein_id=WP_000829662.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1812988 1815702 . - . ID=gene1773;Name=SH04_RS08880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08880;old_locus_tag=SH04_08875 NZ_CP010443.1 Protein Homology CDS 1812988 1815702 . - 0 ID=cds1712;Parent=gene1773;Dbxref=Genbank:WP_000505119.1;Name=WP_000505119.1;Note=Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide;gbkey=CDS;product=sensor histidine kinase;protein_id=WP_000505119.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1815815 1816843 . + . ID=gene1774;Name=SH04_RS08885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08885;old_locus_tag=SH04_08880 NZ_CP010443.1 Protein Homology CDS 1815815 1816843 . + 0 ID=cds1713;Parent=gene1774;Dbxref=Genbank:WP_001264933.1;Name=WP_001264933.1;Note=periplasmic sensory protein associated with the TorRS two-component regulatory system;gbkey=CDS;product=periplasmic protein TorT;protein_id=WP_001264933.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1816816 1817508 . - . ID=gene1775;Name=SH04_RS08890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08890;old_locus_tag=SH04_08885 NZ_CP010443.1 Protein Homology CDS 1816816 1817508 . - 0 ID=cds1714;Parent=gene1775;Dbxref=Genbank:WP_001120125.1;Name=WP_001120125.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001120125.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1817638 1818810 . + . ID=gene1776;Name=SH04_RS08895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08895;old_locus_tag=SH04_08890 NZ_CP010443.1 Protein Homology CDS 1817638 1818810 . + 0 ID=cds1715;Parent=gene1776;Dbxref=Genbank:WP_001230242.1;Name=WP_001230242.1;Note=with TorA forms the inducible trimethylamine N-oxide reductase which transfers electrons from menaquinones first to TorC then to TorA;gbkey=CDS;product=cytochrome c-type protein TorC;protein_id=WP_001230242.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1818810 1821356 . + . ID=gene1777;Name=SH04_RS08900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08900;old_locus_tag=SH04_08895 NZ_CP010443.1 Protein Homology CDS 1818810 1821356 . + 0 ID=cds1716;Parent=gene1777;Dbxref=Genbank:WP_001062091.1;Name=WP_001062091.1;Note=catalyzes the reduction of trimethylamine-N-oxide to form trimethylamine;gbkey=CDS;product=trimethylamine-N-oxide reductase 1;protein_id=WP_001062091.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1821353 1821952 . + . ID=gene1778;Name=torD;gbkey=Gene;gene=torD;gene_biotype=protein_coding;locus_tag=SH04_RS08905;old_locus_tag=SH04_08900 NZ_CP010443.1 Protein Homology CDS 1821353 1821952 . + 0 ID=cds1717;Parent=gene1778;Dbxref=Genbank:WP_000209861.1;Name=WP_000209861.1;Note=TorD%3B involved in the biogenesis of torA%3B acts on torA before the insertion of the molybdenum cofactor and%2C as a result%2C probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor;gbkey=CDS;gene=torD;product=chaperone protein TorD;protein_id=WP_000209861.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1822104 1822409 . - . ID=gene1779;Name=SH04_RS08910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08910;old_locus_tag=SH04_08905 NZ_CP010443.1 Protein Homology CDS 1822104 1822409 . - 0 ID=cds1718;Parent=gene1779;Dbxref=Genbank:WP_000024560.1;Name=WP_000024560.1;Note=with CpbA modulates the activity of the dnaK chaperone system%3B interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA;gbkey=CDS;product=chaperone modulatory protein CbpM;protein_id=WP_000024560.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1822409 1823329 . - . ID=gene1780;Name=SH04_RS08915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08915;old_locus_tag=SH04_08910 NZ_CP010443.1 Protein Homology CDS 1822409 1823329 . - 0 ID=cds1719;Parent=gene1780;Dbxref=Genbank:WP_000420621.1;Name=WP_000420621.1;Note=functional analog of DnaJ%3B co-chaperone with DnaK%2C molecular chaperone in an adaptive response to environmental stresses other than heat shock;gbkey=CDS;product=curved DNA-binding protein;protein_id=WP_000420621.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1823590 1824846 . + . ID=gene1781;Name=SH04_RS08920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08920;old_locus_tag=SH04_08915 NZ_CP010443.1 Protein Homology CDS 1823590 1824846 . + 0 ID=cds1720;Parent=gene1781;Dbxref=Genbank:WP_000535346.1;Name=WP_000535346.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000535346.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1825139 1826380 . + . ID=gene1782;Name=SH04_RS08925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08925;old_locus_tag=SH04_08920 NZ_CP010443.1 Protein Homology CDS 1825139 1826380 . + 0 ID=cds1721;Parent=gene1782;Dbxref=Genbank:WP_001044279.1;Name=WP_001044279.1;gbkey=CDS;product=glucose-1-phosphatase;protein_id=WP_001044279.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1826418 1826645 . - . ID=gene1783;Name=SH04_RS08930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08930;old_locus_tag=SH04_08925 NZ_CP010443.1 Protein Homology CDS 1826418 1826645 . - 0 ID=cds1722;Parent=gene1783;Dbxref=Genbank:WP_001143120.1;Name=WP_001143120.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001143120.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1826666 1827262 . - . ID=gene1784;Name=SH04_RS08935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08935;old_locus_tag=SH04_08930 NZ_CP010443.1 Protein Homology CDS 1826666 1827262 . - 0 ID=cds1723;Parent=gene1784;Dbxref=Genbank:WP_001151437.1;Name=WP_001151437.1;Note=catalyzes the transfer of electrons from NADH to ubiquinone;gbkey=CDS;product=NAD(P)H dehydrogenase (quinone);protein_id=WP_001151437.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1827466 1827702 . + . ID=gene1785;Name=SH04_RS08940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08940;old_locus_tag=SH04_08935 NZ_CP010443.1 Protein Homology CDS 1827466 1827702 . + 0 ID=cds1724;Parent=gene1785;Dbxref=Genbank:WP_012601452.1;Name=WP_012601452.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012601452.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1827635 1827808 . + . ID=gene1786;Name=SH04_RS08945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08945;old_locus_tag=SH04_08940 NZ_CP010443.1 Protein Homology CDS 1827635 1827808 . + 0 ID=cds1725;Parent=gene1786;Dbxref=Genbank:WP_001273658.1;Name=WP_001273658.1;gbkey=CDS;product=KGG family protein;protein_id=WP_001273658.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1828065 1829393 . - . ID=gene1787;Name=SH04_RS08950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08950;old_locus_tag=SH04_08945 NZ_CP010443.1 Protein Homology CDS 1828065 1829393 . - 0 ID=cds1726;Parent=gene1787;Dbxref=Genbank:WP_001326838.1;Name=WP_001326838.1;gbkey=CDS;product=transporter;protein_id=WP_001326838.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1829414 1829908 . - . ID=gene1788;Name=SH04_RS08955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08955;old_locus_tag=SH04_08950 NZ_CP010443.1 Protein Homology CDS 1829414 1829908 . - 0 ID=cds1727;Parent=gene1788;Dbxref=Genbank:WP_001028083.1;Name=WP_001028083.1;gbkey=CDS;product=FMN reductase;protein_id=WP_001028083.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1829919 1830509 . - . ID=gene1789;Name=SH04_RS08960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08960;old_locus_tag=SH04_08955 NZ_CP010443.1 Protein Homology CDS 1829919 1830509 . - 0 ID=cds1728;Parent=gene1789;Dbxref=Genbank:WP_001001176.1;Name=WP_001001176.1;gbkey=CDS;product=malonic semialdehyde reductase RutE;protein_id=WP_001001176.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1830519 1831319 . - . ID=gene1790;Name=SH04_RS08965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08965;old_locus_tag=SH04_08960 NZ_CP010443.1 Protein Homology CDS 1830519 1831319 . - 0 ID=cds1729;Parent=gene1790;Dbxref=Genbank:WP_000777653.1;Name=WP_000777653.1;gbkey=CDS;product=reactive intermediate detoxifying aminoacrylate hydrolase;protein_id=WP_000777653.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1831327 1831713 . - . ID=gene1791;Name=SH04_RS08970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08970;old_locus_tag=SH04_08965 NZ_CP010443.1 Protein Homology CDS 1831327 1831713 . - 0 ID=cds1730;Parent=gene1791;Dbxref=Genbank:WP_001126780.1;Name=WP_001126780.1;gbkey=CDS;product=aminoacrylate deaminase reactive intermediate detoxification%3B weak enamine/imine deaminase activity;protein_id=WP_001126780.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1831725 1832417 . - . ID=gene1792;Name=SH04_RS08975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08975;old_locus_tag=SH04_08970 NZ_CP010443.1 Protein Homology CDS 1831725 1832417 . - 0 ID=cds1731;Parent=gene1792;Dbxref=Genbank:WP_001393558.1;Name=WP_001393558.1;gbkey=CDS;product=peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB;protein_id=WP_001393558.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1832417 1833508 . - . ID=gene1793;Name=SH04_RS08980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08980;old_locus_tag=SH04_08975 NZ_CP010443.1 Protein Homology CDS 1832417 1833508 . - 0 ID=cds1732;Parent=gene1793;Dbxref=Genbank:WP_001340618.1;Name=WP_001340618.1;gbkey=CDS;product=pyrimidine monooxygenase RutA;protein_id=WP_001340618.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1833796 1834434 . + . ID=gene1794;Name=SH04_RS08985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08985;old_locus_tag=SH04_08980 NZ_CP010443.1 Protein Homology CDS 1833796 1834434 . + 0 ID=cds1733;Parent=gene1794;Dbxref=Genbank:WP_000191701.1;Name=WP_000191701.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000191701.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1834474 1838436 . - . ID=gene1795;Name=putA;gbkey=Gene;gene=putA;gene_biotype=protein_coding;locus_tag=SH04_RS08990;old_locus_tag=SH04_08985 NZ_CP010443.1 Protein Homology CDS 1834474 1838436 . - 0 ID=cds1734;Parent=gene1795;Dbxref=Genbank:WP_001326840.1;Name=WP_001326840.1;Note=proline utilization protein A%3B multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate%3B in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus%3B forms dimers and is a peripherally membrane-associated protein;gbkey=CDS;gene=putA;product=bifunctional protein PutA;protein_id=WP_001326840.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1838491 1838700 . + . ID=gene1796;Name=SH04_RS08995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS08995;old_locus_tag=SH04_08990 NZ_CP010443.1 Protein Homology CDS 1838491 1838700 . + 0 ID=cds1735;Parent=gene1796;Dbxref=Genbank:WP_000979516.1;Name=WP_000979516.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000979516.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1838859 1840367 . + . ID=gene1797;Name=SH04_RS09000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09000;old_locus_tag=SH04_08995 NZ_CP010443.1 Protein Homology CDS 1838859 1840367 . + 0 ID=cds1736;Parent=gene1797;Dbxref=Genbank:WP_001018479.1;Name=WP_001018479.1;Note=involved in the sodium dependent uptake of proline;gbkey=CDS;product=sodium/proline symporter;protein_id=WP_001018479.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1840553 1840874 . - . ID=gene1798;Name=SH04_RS09005;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS09005;old_locus_tag=SH04_09000;pseudo=true NZ_CP010443.1 Protein Homology CDS 1840553 1840874 . - 0 ID=cds1737;Parent=gene1798;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 1840910 1841739 . + . ID=gene1799;Name=SH04_RS09010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS09010;pseudo=true NZ_CP010443.1 Protein Homology CDS 1840910 1841739 . + 0 ID=cds1738;Parent=gene1799;exception=annotated by transcript or proteomic data;gbkey=CDS;product=iron permease;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 1841797 1842924 . + . ID=gene1800;Name=SH04_RS09015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09015;old_locus_tag=SH04_09010 NZ_CP010443.1 Protein Homology CDS 1841797 1842924 . + 0 ID=cds1739;Parent=gene1800;Dbxref=Genbank:WP_000154398.1;Name=WP_000154398.1;Note=with EfeUB forms an iron transport system which is silent in E. coli K-12 due to a mutation in EfeU;gbkey=CDS;product=iron uptake system component EfeO;protein_id=WP_000154398.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1842930 1844201 . + . ID=gene1801;Name=SH04_RS09020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09020;old_locus_tag=SH04_09015 NZ_CP010443.1 Protein Homology CDS 1842930 1844201 . + 0 ID=cds1740;Parent=gene1801;Dbxref=Genbank:WP_001199471.1;Name=WP_001199471.1;gbkey=CDS;product=deferrochelatase/peroxidase EfeB;protein_id=WP_001199471.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1844119 1844466 . - . ID=gene1802;Name=SH04_RS09025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09025;old_locus_tag=SH04_09020 NZ_CP010443.1 Protein Homology CDS 1844119 1844466 . - 0 ID=cds1741;Parent=gene1802;Dbxref=Genbank:WP_001326842.1;Name=WP_001326842.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001326842.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1844822 1845610 . + . ID=gene1803;Name=SH04_RS09030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09030;old_locus_tag=SH04_09025 NZ_CP010443.1 Protein Homology CDS 1844822 1845610 . + 0 ID=cds1742;Parent=gene1803;Dbxref=Genbank:WP_000533522.1;Name=WP_000533522.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000533522.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1845660 1846073 . - . ID=gene1804;Name=pgaD;gbkey=Gene;gene=pgaD;gene_biotype=protein_coding;locus_tag=SH04_RS09035;old_locus_tag=SH04_09030 NZ_CP010443.1 Protein Homology CDS 1845660 1846073 . - 0 ID=cds1743;Parent=gene1804;Dbxref=Genbank:WP_001061095.1;Name=WP_001061095.1;Note=in Yersinia this gene is involved in biofilm formation and hemin adsorption%3B in Escherichia coli it is involved in PGA biosynthesis and export;gbkey=CDS;gene=pgaD;product=poly-beta-1%2C6-N-acetyl-D-glucosamine biosynthesis protein PgaD;protein_id=WP_001061095.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1846075 1847313 . - . ID=gene1805;Name=SH04_RS09040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09040;old_locus_tag=SH04_09035 NZ_CP010443.1 Protein Homology CDS 1846075 1847313 . - 0 ID=cds1744;Parent=gene1805;Dbxref=Genbank:WP_000984477.1;Name=WP_000984477.1;Note=predicted polysaccharide polymerase involved in biofilm formation%3B required for the synthesis of the beta-1%2C6-N-acetylglucosamine polysaccharide%3B PgaC%3B in Yersinia the HmsR protein is an inner membrane protein;gbkey=CDS;product=N-glycosyltransferase;protein_id=WP_000984477.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1847393 1849411 . - . ID=gene1806;Name=pgaB;gbkey=Gene;gene=pgaB;gene_biotype=protein_coding;locus_tag=SH04_RS09045;old_locus_tag=SH04_09040 NZ_CP010443.1 Protein Homology CDS 1847393 1849411 . - 0 ID=cds1745;Parent=gene1806;Dbxref=Genbank:WP_000945561.1;Name=WP_000945561.1;Note=in Yersinia this protein is involved in biofilm formation and hemin adsorption%3B related protein PgaB in Escherichia coli is an outer membrane N-deacetylase involved in poly-beta-1%2C6-N-acetyl-D-glucosamine (PGA) export;gbkey=CDS;gene=pgaB;product=poly-beta-1%2C6-N-acetyl-D-glucosamine N-deacetylase;protein_id=WP_000945561.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1849420 1851843 . - . ID=gene1807;Name=pgaA;gbkey=Gene;gene=pgaA;gene_biotype=protein_coding;gene_synonym=hmsH,ycdS;locus_tag=SH04_RS09050;old_locus_tag=SH04_09045 NZ_CP010443.1 Protein Homology CDS 1849420 1851843 . - 0 ID=cds1746;Parent=gene1807;Dbxref=Genbank:WP_000287458.1;Name=WP_000287458.1;Note=outer membrane protein essential for the synthesis of poly-beta-1%2C6-N-acetyl-D-glucosamine (PGA)%3B adhesin required for biofilm formation%3B PgaA (HmsH) seems to translocate and/or dock PGA to the cell surface%3B member of the hmsHFRS (ycdSRQP or pgaABCD in Escherichia coli) operon in Yersinia;gbkey=CDS;gene=pgaA;product=poly-beta-1%2C6-N-acetyl-D-glucosamine export protein;protein_id=WP_000287458.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1852430 1853788 . + . ID=gene1808;Name=SH04_RS09055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09055;old_locus_tag=SH04_09050 NZ_CP010443.1 Protein Homology CDS 1852430 1853788 . + 0 ID=cds1747;Parent=gene1808;Dbxref=Genbank:WP_000409873.1;Name=WP_000409873.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_000409873.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1853798 1855057 . + . ID=id121;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1853829 1854695 . - . ID=gene1809;Name=SH04_RS09060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09060;old_locus_tag=SH04_09055 NZ_CP010443.1 Protein Homology CDS 1853829 1854695 . - 0 ID=cds1748;Parent=gene1809;Dbxref=Genbank:WP_000878218.1;Name=WP_000878218.1;gbkey=CDS;product=transposase;protein_id=WP_000878218.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1854692 1854991 . - . ID=gene1810;Name=SH04_RS09065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09065;old_locus_tag=SH04_09060 NZ_CP010443.1 Protein Homology CDS 1854692 1854991 . - 0 ID=cds1749;Parent=gene1810;Dbxref=Genbank:WP_000169527.1;Name=WP_000169527.1;gbkey=CDS;product=transposase;protein_id=WP_000169527.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1855077 1855400 . + . ID=gene1811;Name=SH04_RS09070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09070;old_locus_tag=SH04_09065 NZ_CP010443.1 Protein Homology CDS 1855077 1855400 . + 0 ID=cds1750;Parent=gene1811;Dbxref=Genbank:WP_000389396.1;Name=WP_000389396.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000389396.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1855397 1856383 . + . ID=gene1812;Name=SH04_RS09075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09075;old_locus_tag=SH04_09070 NZ_CP010443.1 Protein Homology CDS 1855397 1856383 . + 0 ID=cds1751;Parent=gene1812;Dbxref=Genbank:WP_000611859.1;Name=WP_000611859.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000611859.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1856515 1857394 . + . ID=id122;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1856655 1856753 . + . ID=gene1813;Name=SH04_RS09080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09080;old_locus_tag=SH04_09075 NZ_CP010443.1 Protein Homology CDS 1856655 1856753 . + 0 ID=cds1752;Parent=gene1813;Dbxref=Genbank:WP_032144031.1;Name=WP_032144031.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032144031.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1857300 1857387 . - . ID=gene1814;Name=SH04_RS09085;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS09085;old_locus_tag=SH04_09080 NZ_CP010443.1 tRNAscan-SE tRNA 1857300 1857387 . - . ID=rna61;Parent=gene1814;anticodon=(pos:complement(1857351..1857353));gbkey=tRNA;product=tRNA-Ser NZ_CP010443.1 tRNAscan-SE exon 1857300 1857387 . - . ID=id123;Parent=rna61;anticodon=(pos:complement(1857351..1857353));gbkey=tRNA;product=tRNA-Ser NZ_CP010443.1 RefSeq gene 1857621 1858559 . + . ID=gene1815;Name=ghrA;gbkey=Gene;gene=ghrA;gene_biotype=protein_coding;locus_tag=SH04_RS09090;old_locus_tag=SH04_09085 NZ_CP010443.1 Protein Homology CDS 1857621 1858559 . + 0 ID=cds1753;Parent=gene1815;Dbxref=Genbank:WP_000351317.1;Name=WP_000351317.1;Note=catalyzes the formation of glycolate and glycerate from glyoxylate and hydroxypyruvate%2C respectively;gbkey=CDS;gene=ghrA;product=glyoxylate/hydroxypyruvate reductase A;protein_id=WP_000351317.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1858614 1859351 . + . ID=gene1816;Name=SH04_RS09095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09095;old_locus_tag=SH04_09090 NZ_CP010443.1 Protein Homology CDS 1858614 1859351 . + 0 ID=cds1754;Parent=gene1816;Dbxref=Genbank:WP_000283667.1;Name=WP_000283667.1;gbkey=CDS;product=phosphatase;protein_id=WP_000283667.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1859375 1859929 . + . ID=gene1817;Name=SH04_RS09100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09100;old_locus_tag=SH04_09095 NZ_CP010443.1 Protein Homology CDS 1859375 1859929 . + 0 ID=cds1755;Parent=gene1817;Dbxref=Genbank:WP_001001921.1;Name=WP_001001921.1;gbkey=CDS;product=chaperone protein YcdY;protein_id=WP_001001921.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1860031 1860522 . + . ID=gene1818;Name=SH04_RS09105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09105;old_locus_tag=SH04_09100 NZ_CP010443.1 Protein Homology CDS 1860031 1860522 . + 0 ID=cds1756;Parent=gene1818;Dbxref=Genbank:WP_001300785.1;Name=WP_001300785.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001300785.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1860586 1861419 . - . ID=gene1819;Name=SH04_RS09110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09110;old_locus_tag=SH04_09105 NZ_CP010443.1 Protein Homology CDS 1860586 1861419 . - 0 ID=cds1757;Parent=gene1819;Dbxref=Genbank:WP_001189321.1;Name=WP_001189321.1;Note=involved in the stability of the curlin proteins during assembly%3B involved in the secretion of the major curlin subunit CsgA across the outer membrane;gbkey=CDS;product=curli production assembly/transport component CsgG;protein_id=WP_001189321.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1861446 1861862 . - . ID=gene1820;Name=SH04_RS09115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09115;old_locus_tag=SH04_09110 NZ_CP010443.1 Protein Homology CDS 1861446 1861862 . - 0 ID=cds1758;Parent=gene1820;Dbxref=Genbank:WP_001264088.1;Name=WP_001264088.1;Note=nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation)%3B part of the curli secretion and assembly protein complex;gbkey=CDS;product=curli production assembly/transport component CsgF;protein_id=WP_001264088.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1861887 1862276 . - . ID=gene1821;Name=SH04_RS09120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09120;old_locus_tag=SH04_09115 NZ_CP010443.1 Protein Homology CDS 1861887 1862276 . - 0 ID=cds1759;Parent=gene1821;Dbxref=Genbank:WP_000833288.1;Name=WP_000833288.1;Note=chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation)%3B part of the curli secretion and assembly protein complex;gbkey=CDS;product=curli production assembly/transport component CsgE;protein_id=WP_000833288.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1862281 1862931 . - . ID=gene1822;Name=SH04_RS09125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09125;old_locus_tag=SH04_09120 NZ_CP010443.1 Protein Homology CDS 1862281 1862931 . - 0 ID=cds1760;Parent=gene1822;Dbxref=Genbank:WP_000481509.1;Name=WP_000481509.1;Note=activates the csgBA and csgDEFG operons involved in biofilm formation;gbkey=CDS;product=CsgBAC operon transcriptional regulatory protein;protein_id=WP_000481509.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1863398 1863583 . - . ID=gene1823;Name=SH04_RS09130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09130;old_locus_tag=SH04_09125 NZ_CP010443.1 Protein Homology CDS 1863398 1863583 . - 0 ID=cds1761;Parent=gene1823;Dbxref=Genbank:WP_001310711.1;Name=WP_001310711.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001310711.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1863686 1864141 . + . ID=gene1824;Name=csgB;gbkey=Gene;gene=csgB;gene_biotype=protein_coding;locus_tag=SH04_RS09135;old_locus_tag=SH04_09130 NZ_CP010443.1 Protein Homology CDS 1863686 1864141 . + 0 ID=cds1762;Parent=gene1824;Dbxref=Genbank:WP_000791650.1;Name=WP_000791650.1;Note=CsgB%3B functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface;gbkey=CDS;gene=csgB;product=minor curlin subunit;protein_id=WP_000791650.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1864182 1864637 . + . ID=gene1825;Name=csgA;gbkey=Gene;gene=csgA;gene_biotype=protein_coding;locus_tag=SH04_RS09140;old_locus_tag=SH04_09135 NZ_CP010443.1 Protein Homology CDS 1864182 1864637 . + 0 ID=cds1763;Parent=gene1825;Dbxref=Genbank:WP_000771437.1;Name=WP_000771437.1;Note=the major structural subunit of curlin which assemble to form curli which can bind to fibronectin;gbkey=CDS;gene=csgA;product=major curlin subunit;protein_id=WP_000771437.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1864696 1865028 . + . ID=gene1826;Name=csgC;gbkey=Gene;gene=csgC;gene_biotype=protein_coding;locus_tag=SH04_RS09145;old_locus_tag=SH04_09140 NZ_CP010443.1 Protein Homology CDS 1864696 1865028 . + 0 ID=cds1764;Parent=gene1826;Dbxref=Genbank:WP_001094300.1;Name=WP_001094300.1;Note=involved in autoagglutination of curliated cells%3B not involved in production of curli fibers;gbkey=CDS;gene=csgC;product=curli assembly protein CsgC;protein_id=WP_001094300.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1865149 1865460 . + . ID=gene1827;Name=SH04_RS09150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09150;old_locus_tag=SH04_09145 NZ_CP010443.1 Protein Homology CDS 1865149 1865460 . + 0 ID=cds1765;Parent=gene1827;Dbxref=Genbank:WP_000489587.1;Name=WP_000489587.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000489587.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1865555 1866088 . + . ID=gene1828;Name=SH04_RS09155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09155;old_locus_tag=SH04_09150 NZ_CP010443.1 Protein Homology CDS 1865555 1866088 . + 0 ID=cds1766;Parent=gene1828;Dbxref=Genbank:WP_000857405.1;Name=WP_000857405.1;Note=interacts and inactivates RNase III during cold shock;gbkey=CDS;product=O-acetyl-ADP-ribose deacetylase;protein_id=WP_000857405.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1866090 1867511 . + . ID=gene1829;Name=SH04_RS09160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09160;old_locus_tag=SH04_09155 NZ_CP010443.1 Protein Homology CDS 1866090 1867511 . + 0 ID=cds1767;Parent=gene1829;Dbxref=Genbank:WP_001299031.1;Name=WP_001299031.1;gbkey=CDS;product=cardiolipin synthase C;protein_id=WP_001299031.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1867519 1868676 . - . ID=gene1830;Name=opgC;gbkey=Gene;gene=opgC;gene_biotype=protein_coding;gene_synonym=mdoC;locus_tag=SH04_RS09165;old_locus_tag=SH04_09160 NZ_CP010443.1 Protein Homology CDS 1867519 1868676 . - 0 ID=cds1768;Parent=gene1830;Dbxref=Genbank:WP_001070375.1;Name=WP_001070375.1;Note=required for the transfer of succinyl residues to osmoregulated periplasmic glucans;gbkey=CDS;gene=opgC;product=glucan biosynthesis protein C;protein_id=WP_001070375.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1868721 1868864 . - . ID=gene1831;Name=SH04_RS09170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09170;old_locus_tag=SH04_09165 NZ_CP010443.1 Protein Homology CDS 1868721 1868864 . - 0 ID=cds1769;Parent=gene1831;Dbxref=Genbank:WP_001111219.1;Name=WP_001111219.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001111219.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1868868 1868999 . - . ID=gene1832;Name=SH04_RS09175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09175;old_locus_tag=SH04_09170 NZ_CP010443.1 Protein Homology CDS 1868868 1868999 . - 0 ID=cds1770;Parent=gene1832;Dbxref=Genbank:WP_001299036.1;Name=WP_001299036.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001299036.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1869052 1870605 . + . ID=gene1833;Name=mdoG;gbkey=Gene;gene=mdoG;gene_biotype=protein_coding;gene_synonym=opgG;locus_tag=SH04_RS09180;old_locus_tag=SH04_09175 NZ_CP010443.1 Protein Homology CDS 1869052 1870605 . + 0 ID=cds1771;Parent=gene1833;Dbxref=Genbank:WP_000681072.1;Name=WP_000681072.1;Note=involved in the biosynthesis of osmoregulated periplasmic glucans%3B required for the assembly of the polyglucose structure of glucan;gbkey=CDS;gene=mdoG;product=glucan biosynthesis protein G;protein_id=WP_000681072.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1870628 1873141 . + . ID=gene1834;Name=SH04_RS09185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09185;old_locus_tag=SH04_09180 NZ_CP010443.1 Protein Homology CDS 1870628 1873141 . + 0 ID=cds1772;Parent=gene1834;Dbxref=Genbank:WP_024181919.1;Name=WP_024181919.1;Note=necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space;gbkey=CDS;product=glucosyltransferase MdoH;protein_id=WP_024181919.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1873314 1873541 . + . ID=gene1835;Name=SH04_RS09190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09190;old_locus_tag=SH04_09185 NZ_CP010443.1 Protein Homology CDS 1873314 1873541 . + 0 ID=cds1773;Parent=gene1835;Dbxref=Genbank:WP_001237205.1;Name=WP_001237205.1;gbkey=CDS;product=outer membrane integrity lipoprotein;protein_id=WP_001237205.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1873542 1873916 . - . ID=gene1836;Name=SH04_RS09195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09195;old_locus_tag=SH04_09190 NZ_CP010443.1 Protein Homology CDS 1873542 1873916 . - 0 ID=cds1774;Parent=gene1836;Dbxref=Genbank:WP_000180056.1;Name=WP_000180056.1;gbkey=CDS;product=acidic protein MsyB;protein_id=WP_000180056.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1873946 1874044 . - . ID=gene1837;Name=SH04_RS09200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09200;old_locus_tag=SH04_09195 NZ_CP010443.1 Protein Homology CDS 1873946 1874044 . - 0 ID=cds1775;Parent=gene1837;Dbxref=Genbank:WP_001303909.1;Name=WP_001303909.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303909.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1873999 1875225 . - . ID=gene1838;Name=SH04_RS09205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09205;old_locus_tag=SH04_09200 NZ_CP010443.1 Protein Homology CDS 1873999 1875225 . - 0 ID=cds1776;Parent=gene1838;Dbxref=Genbank:WP_000074172.1;Name=WP_000074172.1;Note=Confers resistance to fosfomycin and deoxycholate;gbkey=CDS;product=multidrug resistance protein MdtG;protein_id=WP_000074172.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1875397 1876317 . - . ID=gene1839;Name=SH04_RS09210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09210;old_locus_tag=SH04_09205 NZ_CP010443.1 Protein Homology CDS 1875397 1876317 . - 0 ID=cds1777;Parent=gene1839;Dbxref=Genbank:WP_000183364.1;Name=WP_000183364.1;Note=Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA;gbkey=CDS;product=lipid A biosynthesis lauroyltransferase;protein_id=WP_000183364.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1876542 1877594 . + . ID=gene1840;Name=SH04_RS09215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09215;old_locus_tag=SH04_09210 NZ_CP010443.1 Protein Homology CDS 1876542 1877594 . + 0 ID=cds1778;Parent=gene1840;Dbxref=Genbank:WP_001144615.1;Name=WP_001144615.1;gbkey=CDS;product=rhodanese-related sulfurtransferase;protein_id=WP_001144615.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1877636 1878211 . - . ID=gene1841;Name=SH04_RS09220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09220;old_locus_tag=SH04_09215 NZ_CP010443.1 Protein Homology CDS 1877636 1878211 . - 0 ID=cds1779;Parent=gene1841;Dbxref=Genbank:WP_000749261.1;Name=WP_000749261.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000749261.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1878215 1878781 . - . ID=gene1842;Name=SH04_RS09225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09225;old_locus_tag=SH04_09220 NZ_CP010443.1 Protein Homology CDS 1878215 1878781 . - 0 ID=cds1780;Parent=gene1842;Dbxref=Genbank:WP_000011114.1;Name=WP_000011114.1;gbkey=CDS;product=cytochrome b561 homolog 2;protein_id=WP_000011114.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1879042 1879155 . - . ID=gene1843;Name=SH04_RS09230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09230;old_locus_tag=SH04_09225 NZ_CP010443.1 Protein Homology CDS 1879042 1879155 . - 0 ID=cds1781;Parent=gene1843;Dbxref=Genbank:WP_001253418.1;Name=WP_001253418.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001253418.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1879203 1880321 . - . ID=gene1844;Name=solA;gbkey=Gene;gene=solA;gene_biotype=protein_coding;locus_tag=SH04_RS09235;old_locus_tag=SH04_09230 NZ_CP010443.1 Protein Homology CDS 1879203 1880321 . - 0 ID=cds1782;Parent=gene1844;Dbxref=Genbank:WP_000872833.1;Name=WP_000872833.1;Note=catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde%3B FAD-binding%3B can also catalyze the demethylation of other N-methyl amino acids;gbkey=CDS;gene=solA;product=N-methyl-L-tryptophan oxidase;protein_id=WP_000872833.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1880436 1880690 . - . ID=gene1845;Name=bssS;gbkey=Gene;gene=bssS;gene_biotype=protein_coding;gene_synonym=yceP;locus_tag=SH04_RS09240;old_locus_tag=SH04_09235 NZ_CP010443.1 Protein Homology CDS 1880436 1880690 . - 0 ID=cds1783;Parent=gene1845;Dbxref=Genbank:WP_000414438.1;Name=WP_000414438.1;Note=BssS%3B regulator of biofilm through signal secretion%3B disruption of this gene in Escherichia coli led to effects on biofilm formation%2C alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing;gbkey=CDS;gene=bssS;product=biofilm regulator BssS;protein_id=WP_000414438.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1880977 1881222 . - . ID=gene1846;Name=SH04_RS09245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09245;old_locus_tag=SH04_09240 NZ_CP010443.1 Protein Homology CDS 1880977 1881222 . - 0 ID=cds1784;Parent=gene1846;Dbxref=Genbank:WP_001217754.1;Name=WP_001217754.1;gbkey=CDS;product=DNA-damage-inducible protein I;protein_id=WP_001217754.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1881296 1882342 . - . ID=gene1847;Name=SH04_RS09250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09250;old_locus_tag=SH04_09245 NZ_CP010443.1 Protein Homology CDS 1881296 1882342 . - 0 ID=cds1785;Parent=gene1847;Dbxref=Genbank:WP_000126534.1;Name=WP_000126534.1;gbkey=CDS;product=dihydroorotase;protein_id=WP_000126534.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1882448 1883008 . - . ID=gene1848;Name=SH04_RS09255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09255;old_locus_tag=SH04_09250 NZ_CP010443.1 Protein Homology CDS 1882448 1883008 . - 0 ID=cds1786;Parent=gene1848;Dbxref=Genbank:WP_001295443.1;Name=WP_001295443.1;gbkey=CDS;product=lipoprotein;protein_id=WP_001295443.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1883142 1883789 . - . ID=gene1849;Name=SH04_RS09260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09260;old_locus_tag=SH04_09255 NZ_CP010443.1 Protein Homology CDS 1883142 1883789 . - 0 ID=cds1787;Parent=gene1849;Dbxref=Genbank:WP_000780912.1;Name=WP_000780912.1;Note=cofactor involved in the reduction of disulfides;gbkey=CDS;product=glutaredoxin;protein_id=WP_000780912.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1883853 1885061 . - . ID=gene1850;Name=SH04_RS09265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09265;old_locus_tag=SH04_09260 NZ_CP010443.1 Protein Homology CDS 1883853 1885061 . - 0 ID=cds1788;Parent=gene1850;Dbxref=Genbank:WP_000092206.1;Name=WP_000092206.1;Note=Confers resistance to norfloxacin and enoxacin;gbkey=CDS;product=multidrug resistance protein MdtH;protein_id=WP_000092206.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1885297 1885881 . + . ID=gene1851;Name=SH04_RS09270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09270;old_locus_tag=SH04_09265 NZ_CP010443.1 Protein Homology CDS 1885297 1885881 . + 0 ID=cds1789;Parent=gene1851;Dbxref=Genbank:WP_000468186.1;Name=WP_000468186.1;gbkey=CDS;product=ribosomal-protein-alanine acetyltransferase;protein_id=WP_000468186.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1885892 1886539 . + . ID=gene1852;Name=SH04_RS09275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09275;old_locus_tag=SH04_09270 NZ_CP010443.1 Protein Homology CDS 1885892 1886539 . + 0 ID=cds1790;Parent=gene1852;Dbxref=Genbank:WP_000877107.1;Name=WP_000877107.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000877107.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1886541 1887464 . + . ID=gene1853;Name=SH04_RS09280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09280;old_locus_tag=SH04_09275 NZ_CP010443.1 Protein Homology CDS 1886541 1887464 . + 0 ID=cds1791;Parent=gene1853;Dbxref=Genbank:WP_000736158.1;Name=WP_000736158.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000736158.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1887574 1889109 . + . ID=gene1854;Name=SH04_RS09285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09285;old_locus_tag=SH04_09280 NZ_CP010443.1 Protein Homology CDS 1887574 1889109 . + 0 ID=cds1792;Parent=gene1854;Dbxref=Genbank:WP_001050683.1;Name=WP_001050683.1;gbkey=CDS;product=lipid II flippase MurJ;protein_id=WP_001050683.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1889149 1889565 . - . ID=gene1855;Name=SH04_RS09290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09290;old_locus_tag=SH04_09285 NZ_CP010443.1 Protein Homology CDS 1889149 1889565 . - 0 ID=cds1793;Parent=gene1855;Dbxref=Genbank:WP_000197363.1;Name=WP_000197363.1;Note=export chaperone for FlgK and FlgL;gbkey=CDS;product=flagella synthesis protein FlgN;protein_id=WP_000197363.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1889570 1889863 . - . ID=gene1856;Name=SH04_RS09295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09295;old_locus_tag=SH04_09290 NZ_CP010443.1 Protein Homology CDS 1889570 1889863 . - 0 ID=cds1794;Parent=gene1856;Dbxref=Genbank:WP_000020880.1;Name=WP_000020880.1;Note=regulates the flagellar specific sigma28 transcription factor;gbkey=CDS;product=negative regulator of flagellin synthesis;protein_id=WP_000020880.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1889939 1890598 . - . ID=gene1857;Name=flgA;gbkey=Gene;gene=flgA;gene_biotype=protein_coding;locus_tag=SH04_RS09300;old_locus_tag=SH04_09295 NZ_CP010443.1 Protein Homology CDS 1889939 1890598 . - 0 ID=cds1795;Parent=gene1857;Dbxref=Genbank:WP_000905458.1;Name=WP_000905458.1;Note=required for the assembly of the flagellar basal body P-ring;gbkey=CDS;gene=flgA;product=flagella basal body P-ring formation protein FlgA;protein_id=WP_000905458.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1890753 1891169 . + . ID=gene1858;Name=flgB;gbkey=Gene;gene=flgB;gene_biotype=protein_coding;locus_tag=SH04_RS09305;old_locus_tag=SH04_09300 NZ_CP010443.1 Protein Homology CDS 1890753 1891169 . + 0 ID=cds1796;Parent=gene1858;Dbxref=Genbank:WP_000884702.1;Name=WP_000884702.1;Note=with FlgF and C makes up the proximal portion of the flagellar basal body rod%3B Vibrio parahaemolyticus protein is associated with the polar flagella;gbkey=CDS;gene=flgB;product=flagellar biosynthesis protein FlgB;protein_id=WP_000884702.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1891173 1891577 . + . ID=gene1859;Name=flgC;gbkey=Gene;gene=flgC;gene_biotype=protein_coding;locus_tag=SH04_RS09310;old_locus_tag=SH04_09305 NZ_CP010443.1 Protein Homology CDS 1891173 1891577 . + 0 ID=cds1797;Parent=gene1859;Dbxref=Genbank:WP_001196460.1;Name=WP_001196460.1;Note=with FlgF and B makes up the proximal portion of the flagellar basal body rod;gbkey=CDS;gene=flgC;product=flagellar basal-body rod protein FlgC;protein_id=WP_001196460.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1891589 1892284 . + . ID=gene1860;Name=flgD;gbkey=Gene;gene=flgD;gene_biotype=protein_coding;locus_tag=SH04_RS09315;old_locus_tag=SH04_09310 NZ_CP010443.1 Protein Homology CDS 1891589 1892284 . + 0 ID=cds1798;Parent=gene1860;Dbxref=Genbank:WP_000020486.1;Name=WP_000020486.1;Note=acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of some flagellar genes%3B in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production;gbkey=CDS;gene=flgD;product=flagellar basal body rod modification protein FlgD;protein_id=WP_000020486.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1892309 1893517 . + . ID=gene1861;Name=flgE;gbkey=Gene;gene=flgE;gene_biotype=protein_coding;locus_tag=SH04_RS09320;old_locus_tag=SH04_09315 NZ_CP010443.1 Protein Homology CDS 1892309 1893517 . + 0 ID=cds1799;Parent=gene1861;Dbxref=Genbank:WP_000885873.1;Name=WP_000885873.1;Note=the hook connects flagellar basal body to the flagellar filament;gbkey=CDS;gene=flgE;product=flagellar hook protein FlgE;protein_id=WP_000885873.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1893537 1894292 . + . ID=gene1862;Name=flgF;gbkey=Gene;gene=flgF;gene_biotype=protein_coding;locus_tag=SH04_RS09325;old_locus_tag=SH04_09320 NZ_CP010443.1 Protein Homology CDS 1893537 1894292 . + 0 ID=cds1800;Parent=gene1862;Dbxref=Genbank:WP_000349316.1;Name=WP_000349316.1;Note=FlgF%2C with FlgB and C%2C makes up the proximal portion of the flagellar basal body rod;gbkey=CDS;gene=flgF;product=flagellar basal-body rod protein FlgF;protein_id=WP_000349316.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1894464 1895246 . + . ID=gene1863;Name=flgG;gbkey=Gene;gene=flgG;gene_biotype=protein_coding;locus_tag=SH04_RS09330;old_locus_tag=SH04_09325 NZ_CP010443.1 Protein Homology CDS 1894464 1895246 . + 0 ID=cds1801;Parent=gene1863;Dbxref=Genbank:WP_000625837.1;Name=WP_000625837.1;Note=makes up the distal portion of the flagellar basal body rod;gbkey=CDS;gene=flgG;product=flagellar basal body rod protein FlgG;protein_id=WP_000625837.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1895299 1895997 . + . ID=gene1864;Name=flgH;gbkey=Gene;gene=flgH;gene_biotype=protein_coding;locus_tag=SH04_RS09335;old_locus_tag=SH04_09330 NZ_CP010443.1 Protein Homology CDS 1895299 1895997 . + 0 ID=cds1802;Parent=gene1864;Dbxref=Genbank:WP_001295442.1;Name=WP_001295442.1;Note=part of the flagellar basal body which consists of four rings L%2CP%2C S and M mounted on a central rod;gbkey=CDS;gene=flgH;product=flagellar L-ring protein;protein_id=WP_001295442.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1896009 1897106 . + . ID=gene1865;Name=flgI;gbkey=Gene;gene=flgI;gene_biotype=protein_coding;locus_tag=SH04_RS09340;old_locus_tag=SH04_09335 NZ_CP010443.1 Protein Homology CDS 1896009 1897106 . + 0 ID=cds1803;Parent=gene1865;Dbxref=Genbank:WP_000589326.1;Name=WP_000589326.1;Note=part of the basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod%3B Vibrio parahaemolyticus%2C Yersinia%2C Bradyrhizobium and other bacteria have two copies of this and other flagellar genes%3B the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum;gbkey=CDS;gene=flgI;product=flagellar P-ring protein;protein_id=WP_000589326.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1897106 1898047 . + . ID=gene1866;Name=flgJ;gbkey=Gene;gene=flgJ;gene_biotype=protein_coding;locus_tag=SH04_RS09345;old_locus_tag=SH04_09340 NZ_CP010443.1 Protein Homology CDS 1897106 1898047 . + 0 ID=cds1804;Parent=gene1866;Dbxref=Genbank:WP_001295441.1;Name=WP_001295441.1;Note=Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space;gbkey=CDS;gene=flgJ;product=peptidoglycan hydrolase FlgJ;protein_id=WP_001295441.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1898113 1899756 . + . ID=gene1867;Name=flgK;gbkey=Gene;gene=flgK;gene_biotype=protein_coding;locus_tag=SH04_RS09350;old_locus_tag=SH04_09345 NZ_CP010443.1 Protein Homology CDS 1898113 1899756 . + 0 ID=cds1805;Parent=gene1867;Dbxref=Genbank:WP_000096479.1;Name=WP_000096479.1;Note=with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook;gbkey=CDS;gene=flgK;product=flagellar hook-associated protein 1;protein_id=WP_000096479.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1899768 1900721 . + . ID=gene1868;Name=flgL;gbkey=Gene;gene=flgL;gene_biotype=protein_coding;locus_tag=SH04_RS09355;old_locus_tag=SH04_09350 NZ_CP010443.1 Protein Homology CDS 1899768 1900721 . + 0 ID=cds1806;Parent=gene1868;Dbxref=Genbank:WP_001212782.1;Name=WP_001212782.1;Note=with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes;gbkey=CDS;gene=flgL;product=flagellar hook-associated protein;protein_id=WP_001212782.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1900917 1904102 . - . ID=gene1869;Name=rne;gbkey=Gene;gene=rne;gene_biotype=protein_coding;locus_tag=SH04_RS09360;old_locus_tag=SH04_09355 NZ_CP010443.1 Protein Homology CDS 1900917 1904102 . - 0 ID=cds1807;Parent=gene1869;Dbxref=Genbank:WP_000827360.1;Name=WP_000827360.1;Note=bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein%3B forms part of the membrane-associated degradosome complex along with PNPase%2C RhlB%2C and enolase;gbkey=CDS;gene=rne;product=ribonuclease E;protein_id=WP_000827360.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1904237 1904557 . + . ID=gene1870;Name=SH04_RS09365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09365;old_locus_tag=SH04_09360 NZ_CP010443.1 Protein Homology CDS 1904237 1904557 . + 0 ID=cds1808;Parent=gene1870;Dbxref=Genbank:WP_001295962.1;Name=WP_001295962.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295962.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1904675 1905634 . + . ID=gene1871;Name=SH04_RS09370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09370;old_locus_tag=SH04_09365 NZ_CP010443.1 Protein Homology CDS 1904675 1905634 . + 0 ID=cds1809;Parent=gene1871;Dbxref=Genbank:WP_000846343.1;Name=WP_000846343.1;Note=catalyzes the transformation of uracil to pseudouracil at nucleotides U955%2C U2504%2C and U2580 in 23S rRNA;gbkey=CDS;product=ribosomal large subunit pseudouridine synthase C;protein_id=WP_000846343.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1905746 1906330 . - . ID=gene1872;Name=SH04_RS09375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09375;old_locus_tag=SH04_09370 NZ_CP010443.1 Protein Homology CDS 1905746 1906330 . - 0 ID=cds1810;Parent=gene1872;Dbxref=Genbank:WP_001125202.1;Name=WP_001125202.1;Note=Maf%3B overexpression in Bacillus subtilis inhibits septation in the dividing cell;gbkey=CDS;product=m(7)GTP pyrophosphatase;protein_id=WP_001125202.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1906529 1907050 . + . ID=gene1873;Name=SH04_RS09380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09380;old_locus_tag=SH04_09375 NZ_CP010443.1 Protein Homology CDS 1906529 1907050 . + 0 ID=cds1811;Parent=gene1873;Dbxref=Genbank:WP_001174481.1;Name=WP_001174481.1;gbkey=CDS;product=DUF177 domain-containing protein;protein_id=WP_001174481.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1907102 1907275 . + . ID=gene1874;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=SH04_RS09385;old_locus_tag=SH04_09380 NZ_CP010443.1 Protein Homology CDS 1907102 1907275 . + 0 ID=cds1812;Parent=gene1874;Dbxref=Genbank:WP_000290727.1;Name=WP_000290727.1;Note=some L32 proteins have zinc finger motifs consisting of CXXC while others do not;gbkey=CDS;gene=rpmF;product=50S ribosomal protein L32;protein_id=WP_000290727.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1907386 1908426 . + . ID=gene1875;Name=SH04_RS09390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09390;old_locus_tag=SH04_09385 NZ_CP010443.1 Protein Homology CDS 1907386 1908426 . + 0 ID=cds1813;Parent=gene1875;Dbxref=Genbank:WP_014639043.1;Name=WP_014639043.1;gbkey=CDS;product=phosphate acyltransferase;protein_id=WP_014639043.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1908494 1909447 . + . ID=gene1876;Name=SH04_RS09395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09395;old_locus_tag=SH04_09390 NZ_CP010443.1 Protein Homology CDS 1908494 1909447 . + 0 ID=cds1814;Parent=gene1876;Dbxref=Genbank:WP_000288132.1;Name=WP_000288132.1;Note=FabH%3B beta-ketoacyl-acyl carrier protein synthase III%3B catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation%3B differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs;gbkey=CDS;product=3-oxoacyl-ACP synthase III;protein_id=WP_000288132.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1909463 1910392 . + . ID=gene1877;Name=SH04_RS09400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09400;old_locus_tag=SH04_09395 NZ_CP010443.1 Protein Homology CDS 1909463 1910392 . + 0 ID=cds1815;Parent=gene1877;Dbxref=Genbank:WP_000191372.1;Name=WP_000191372.1;gbkey=CDS;product=malonyl CoA-ACP transacylase;protein_id=WP_000191372.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1910405 1911139 . + . ID=gene1878;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=SH04_RS09405;old_locus_tag=SH04_09400 NZ_CP010443.1 Protein Homology CDS 1910405 1911139 . + 0 ID=cds1816;Parent=gene1878;Dbxref=Genbank:WP_001008535.1;Name=WP_001008535.1;Note=catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis;gbkey=CDS;gene=fabG;product=3-oxoacyl-ACP reductase;protein_id=WP_001008535.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1911350 1911586 . + . ID=gene1879;Name=SH04_RS09410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09410;old_locus_tag=SH04_09405 NZ_CP010443.1 Protein Homology CDS 1911350 1911586 . + 0 ID=cds1817;Parent=gene1879;Dbxref=Genbank:WP_000103754.1;Name=WP_000103754.1;Note=carries the fatty acid chain in fatty acid biosynthesis;gbkey=CDS;product=acyl carrier protein;protein_id=WP_000103754.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1911674 1912915 . + . ID=gene1880;Name=SH04_RS09415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09415;old_locus_tag=SH04_09410 NZ_CP010443.1 Protein Homology CDS 1911674 1912915 . + 0 ID=cds1818;Parent=gene1880;Dbxref=Genbank:WP_000044679.1;Name=WP_000044679.1;Note=FabF%3B beta-ketoacyl-ACP synthase II%2C KASII%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP;gbkey=CDS;product=3-oxoacyl-ACP synthase II;protein_id=WP_000044679.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1913035 1913844 . + . ID=gene1881;Name=SH04_RS09420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09420;old_locus_tag=SH04_09415 NZ_CP010443.1 Protein Homology CDS 1913035 1913844 . + 0 ID=cds1819;Parent=gene1881;Dbxref=Genbank:WP_000478681.1;Name=WP_000478681.1;Note=catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate;gbkey=CDS;product=aminodeoxychorismate lyase;protein_id=WP_000478681.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1913847 1914869 . + . ID=gene1882;Name=SH04_RS09425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09425;old_locus_tag=SH04_09420 NZ_CP010443.1 Protein Homology CDS 1913847 1914869 . + 0 ID=cds1820;Parent=gene1882;Dbxref=Genbank:WP_000756827.1;Name=WP_000756827.1;gbkey=CDS;product=septation protein%2C ampicillin sensitivity;protein_id=WP_000756827.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1914859 1915500 . + . ID=gene1883;Name=SH04_RS09430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09430;old_locus_tag=SH04_09425 NZ_CP010443.1 Protein Homology CDS 1914859 1915500 . + 0 ID=cds1821;Parent=gene1883;Dbxref=Genbank:WP_001257000.1;Name=WP_001257000.1;gbkey=CDS;product=thymidylate kinase;protein_id=WP_001257000.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1915497 1916501 . + . ID=gene1884;Name=SH04_RS09435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09435;old_locus_tag=SH04_09430 NZ_CP010443.1 Protein Homology CDS 1915497 1916501 . + 0 ID=cds1822;Parent=gene1884;Dbxref=Genbank:WP_001267956.1;Name=WP_001267956.1;Note=catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA;gbkey=CDS;product=DNA polymerase III subunit delta';protein_id=WP_001267956.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1916512 1917309 . + . ID=gene1885;Name=SH04_RS09440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09440;old_locus_tag=SH04_09435 NZ_CP010443.1 Protein Homology CDS 1916512 1917309 . + 0 ID=cds1823;Parent=gene1885;Dbxref=Genbank:WP_000480245.1;Name=WP_000480245.1;gbkey=CDS;product=DNAse;protein_id=WP_000480245.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1917604 1919037 . + . ID=gene1886;Name=SH04_RS09445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09445;old_locus_tag=SH04_09440 NZ_CP010443.1 Protein Homology CDS 1917604 1919037 . + 0 ID=cds1824;Parent=gene1886;Dbxref=Genbank:WP_000475719.1;Name=WP_000475719.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS glucose EIICB component;protein_id=WP_000475719.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1919097 1921286 . - . ID=gene1887;Name=SH04_RS09450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09450;old_locus_tag=SH04_09445 NZ_CP010443.1 Protein Homology CDS 1919097 1921286 . - 0 ID=cds1825;Parent=gene1887;Dbxref=Genbank:WP_000953441.1;Name=WP_000953441.1;gbkey=CDS;product=fhuE receptor;protein_id=WP_000953441.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1921620 1921979 . + . ID=gene1888;Name=SH04_RS09455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09455;old_locus_tag=SH04_09450 NZ_CP010443.1 Protein Homology CDS 1921620 1921979 . + 0 ID=cds1826;Parent=gene1888;Dbxref=Genbank:WP_000807125.1;Name=WP_000807125.1;gbkey=CDS;product=HIT-like protein HinT;protein_id=WP_000807125.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1921982 1922359 . + . ID=gene1889;Name=SH04_RS09460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09460;old_locus_tag=SH04_09455 NZ_CP010443.1 Protein Homology CDS 1921982 1922359 . + 0 ID=cds1827;Parent=gene1889;Dbxref=Genbank:WP_001225295.1;Name=WP_001225295.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001225295.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1922373 1923014 . + . ID=gene1890;Name=SH04_RS09465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09465;old_locus_tag=SH04_09460 NZ_CP010443.1 Protein Homology CDS 1922373 1923014 . + 0 ID=cds1828;Parent=gene1890;Dbxref=Genbank:WP_000164439.1;Name=WP_000164439.1;gbkey=CDS;product=penicillin-binding protein activator LpoB;protein_id=WP_000164439.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1922995 1923819 . + . ID=gene1891;Name=thiK;gbkey=Gene;gene=thiK;gene_biotype=protein_coding;locus_tag=SH04_RS09470;old_locus_tag=SH04_09465 NZ_CP010443.1 Protein Homology CDS 1922995 1923819 . + 0 ID=cds1829;Parent=gene1891;Dbxref=Genbank:WP_001116592.1;Name=WP_001116592.1;Note=catalyzes the phosphorylation of thiamine to thiamine phosphate;gbkey=CDS;gene=thiK;product=thiamine kinase;protein_id=WP_001116592.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1923830 1924855 . + . ID=gene1892;Name=SH04_RS09475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09475;old_locus_tag=SH04_09470 NZ_CP010443.1 Protein Homology CDS 1923830 1924855 . + 0 ID=cds1830;Parent=gene1892;Dbxref=Genbank:WP_000529320.1;Name=WP_000529320.1;Note=hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides;gbkey=CDS;product=beta-hexosaminidase;protein_id=WP_000529320.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1924878 1925420 . + . ID=gene1893;Name=SH04_RS09480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09480;old_locus_tag=SH04_09475 NZ_CP010443.1 Protein Homology CDS 1924878 1925420 . + 0 ID=cds1831;Parent=gene1893;Dbxref=Genbank:WP_000587933.1;Name=WP_000587933.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000587933.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1925820 1927124 . + . ID=gene1894;Name=SH04_RS09485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09485;old_locus_tag=SH04_09480 NZ_CP010443.1 Protein Homology CDS 1925820 1927124 . + 0 ID=cds1832;Parent=gene1894;Dbxref=Genbank:WP_000211045.1;Name=WP_000211045.1;gbkey=CDS;product=NADH dehydrogenase;protein_id=WP_000211045.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1927334 1927873 . + . ID=gene1895;Name=SH04_RS09490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09490;old_locus_tag=SH04_09485 NZ_CP010443.1 Protein Homology CDS 1927334 1927873 . + 0 ID=cds1833;Parent=gene1895;Dbxref=Genbank:WP_001043459.1;Name=WP_001043459.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001043459.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1927935 1928567 . - . ID=gene1896;Name=SH04_RS09495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09495;old_locus_tag=SH04_09490 NZ_CP010443.1 Protein Homology CDS 1927935 1928567 . - 0 ID=cds1834;Parent=gene1896;Dbxref=Genbank:WP_001336528.1;Name=WP_001336528.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001336528.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1928808 1929065 . + . ID=gene1897;Name=SH04_RS09500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09500;old_locus_tag=SH04_09495 NZ_CP010443.1 Protein Homology CDS 1928808 1929065 . + 0 ID=cds1835;Parent=gene1897;Dbxref=Genbank:WP_000800153.1;Name=WP_000800153.1;gbkey=CDS;product=multiple stress resistance protein BhsA;protein_id=WP_000800153.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1929147 1930106 . - . ID=gene1898;Name=SH04_RS09505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09505;old_locus_tag=SH04_09500 NZ_CP010443.1 Protein Homology CDS 1929147 1930106 . - 0 ID=cds1836;Parent=gene1898;Dbxref=Genbank:WP_000598207.1;Name=WP_000598207.1;gbkey=CDS;product=peptidoglycan-binding protein LysM;protein_id=WP_000598207.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1930253 1933699 . - . ID=gene1899;Name=SH04_RS09510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09510;old_locus_tag=SH04_09505 NZ_CP010443.1 Protein Homology CDS 1930253 1933699 . - 0 ID=cds1837;Parent=gene1899;Dbxref=Genbank:WP_001115094.1;Name=WP_001115094.1;gbkey=CDS;product=transcription-repair-coupling factor;protein_id=WP_001115094.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1933827 1934900 . - . ID=gene1900;Name=SH04_RS09515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09515;old_locus_tag=SH04_09510 NZ_CP010443.1 Protein Homology CDS 1933827 1934900 . - 0 ID=cds1838;Parent=gene1900;Dbxref=Genbank:WP_000810253.1;Name=WP_000810253.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000810253.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1935162 1936361 . + . ID=gene1901;Name=SH04_RS09520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09520;old_locus_tag=SH04_09515 NZ_CP010443.1 Protein Homology CDS 1935162 1936361 . + 0 ID=cds1839;Parent=gene1901;Dbxref=Genbank:WP_000284714.1;Name=WP_000284714.1;Note=part of the ATP-dependent transport system LolCDE%3B responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane;gbkey=CDS;product=lipoprotein-releasing system protein LolC;protein_id=WP_000284714.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1936354 1937055 . + . ID=gene1902;Name=lolD;gbkey=Gene;gene=lolD;gene_biotype=protein_coding;locus_tag=SH04_RS09525;old_locus_tag=SH04_09520 NZ_CP010443.1 Protein Homology CDS 1936354 1937055 . + 0 ID=cds1840;Parent=gene1902;Dbxref=Genbank:WP_001033694.1;Name=WP_001033694.1;Note=outer membrane specific%3B part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins%2C from the inner membrane to the periplasmic chaperone;gbkey=CDS;gene=lolD;product=lipoprotein-releasing system ATP-binding protein LolD;protein_id=WP_001033694.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1937055 1938299 . + . ID=gene1903;Name=SH04_RS09530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09530;old_locus_tag=SH04_09525 NZ_CP010443.1 Protein Homology CDS 1937055 1938299 . + 0 ID=cds1841;Parent=gene1903;Dbxref=Genbank:WP_001251348.1;Name=WP_001251348.1;Note=part of the ATP-dependent transport system LolCDE%3B responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane;gbkey=CDS;product=lipoprotein-releasing system protein LolE;protein_id=WP_001251348.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1938328 1939239 . + . ID=gene1904;Name=SH04_RS09535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09535;old_locus_tag=SH04_09530 NZ_CP010443.1 Protein Homology CDS 1938328 1939239 . + 0 ID=cds1842;Parent=gene1904;Dbxref=Genbank:WP_000291270.1;Name=WP_000291270.1;Note=catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine;gbkey=CDS;product=N-acetyl-D-glucosamine kinase;protein_id=WP_000291270.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1939255 1940094 . + . ID=gene1905;Name=SH04_RS09540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09540;old_locus_tag=SH04_09535 NZ_CP010443.1 Protein Homology CDS 1939255 1940094 . + 0 ID=cds1843;Parent=gene1905;Dbxref=Genbank:WP_000952737.1;Name=WP_000952737.1;Note=Modulates the activities of several enzymes which are inactive in their acetylated form;gbkey=CDS;product=NAD-dependent deacetylase;protein_id=WP_000952737.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1940214 1941002 . - . ID=gene1906;Name=SH04_RS09545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09545;old_locus_tag=SH04_09540 NZ_CP010443.1 Protein Homology CDS 1940214 1941002 . - 0 ID=cds1844;Parent=gene1906;Dbxref=Genbank:WP_000713462.1;Name=WP_000713462.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000713462.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1940999 1941460 . - . ID=gene1907;Name=SH04_RS09550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09550;old_locus_tag=SH04_09545 NZ_CP010443.1 Protein Homology CDS 1940999 1941460 . - 0 ID=cds1845;Parent=gene1907;Dbxref=Genbank:WP_000076376.1;Name=WP_000076376.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000076376.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1941518 1942564 . - . ID=gene1908;Name=potD;gbkey=Gene;gene=potD;gene_biotype=protein_coding;locus_tag=SH04_RS09555;old_locus_tag=SH04_09550 NZ_CP010443.1 Protein Homology CDS 1941518 1942564 . - 0 ID=cds1846;Parent=gene1908;Dbxref=Genbank:WP_000759317.1;Name=WP_000759317.1;Note=can transport spermidine and putrescine but affinity is higher for spermidine%3B forms a complex of PotA2BCD%3B PotD is a periplasmic component that binds the substrate;gbkey=CDS;gene=potD;product=spermidine/putrescine-binding periplasmic protein;protein_id=WP_000759317.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1942561 1943355 . - . ID=gene1909;Name=potC;gbkey=Gene;gene=potC;gene_biotype=protein_coding;locus_tag=SH04_RS09560;old_locus_tag=SH04_09555 NZ_CP010443.1 Protein Homology CDS 1942561 1943355 . - 0 ID=cds1847;Parent=gene1909;Dbxref=Genbank:WP_000580316.1;Name=WP_000580316.1;Note=can transport spermidine and putrescine but affinity is higher for spermidine%3B forms a complex of PotA2BCD%3B PotC is a membrane component;gbkey=CDS;gene=potC;product=spermidine/putrescine ABC transporter permease;protein_id=WP_000580316.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1943352 1944209 . - . ID=gene1910;Name=potB;gbkey=Gene;gene=potB;gene_biotype=protein_coding;locus_tag=SH04_RS09565;old_locus_tag=SH04_09560 NZ_CP010443.1 Protein Homology CDS 1943352 1944209 . - 0 ID=cds1848;Parent=gene1910;Dbxref=Genbank:WP_000799401.1;Name=WP_000799401.1;Note=can transport spermidine and putrescine but affinity is higher for spermidine%3B forms a complex of PotA2BCD%3B PotB is a membrane component;gbkey=CDS;gene=potB;product=spermidine/putrescine ABC transporter permease;protein_id=WP_000799401.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1944193 1945329 . - . ID=gene1911;Name=potA;gbkey=Gene;gene=potA;gene_biotype=protein_coding;locus_tag=SH04_RS09570;old_locus_tag=SH04_09565 NZ_CP010443.1 Protein Homology CDS 1944193 1945329 . - 0 ID=cds1849;Parent=gene1911;Dbxref=Genbank:WP_000531594.1;Name=WP_000531594.1;Note=functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport%3B PotA is the membrane-associated ATPase;gbkey=CDS;gene=potA;product=Fe3+/spermidine/putrescine ABC transporter ATP-binding protein;protein_id=WP_000531594.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1945308 1945523 . - . ID=gene1912;Name=SH04_RS09575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09575;old_locus_tag=SH04_09570 NZ_CP010443.1 Protein Homology CDS 1945308 1945523 . - 0 ID=cds1850;Parent=gene1912;Dbxref=Genbank:WP_001299275.1;Name=WP_001299275.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001299275.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1945579 1946805 . + . ID=gene1913;Name=SH04_RS09580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09580;old_locus_tag=SH04_09575 NZ_CP010443.1 Protein Homology CDS 1945579 1946805 . + 0 ID=cds1851;Parent=gene1913;Dbxref=Genbank:WP_000359434.1;Name=WP_000359434.1;gbkey=CDS;product=peptidase T;protein_id=WP_000359434.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1946854 1947975 . - . ID=gene1914;Name=SH04_RS09585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09585;old_locus_tag=SH04_09580 NZ_CP010443.1 Protein Homology CDS 1946854 1947975 . - 0 ID=cds1852;Parent=gene1914;Dbxref=Genbank:WP_000456506.1;Name=WP_000456506.1;gbkey=CDS;product=50S ribosomal protein L16 arginine hydroxylase;protein_id=WP_000456506.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1948051 1949511 . - . ID=gene1915;Name=SH04_RS09590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09590;old_locus_tag=SH04_09585 NZ_CP010443.1 Protein Homology CDS 1948051 1949511 . - 0 ID=cds1853;Parent=gene1915;Dbxref=Genbank:WP_000735412.1;Name=WP_000735412.1;gbkey=CDS;product=sensor protein PhoQ;protein_id=WP_000735412.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1949511 1950182 . - . ID=gene1916;Name=SH04_RS09595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09595;old_locus_tag=SH04_09590 NZ_CP010443.1 Protein Homology CDS 1949511 1950182 . - 0 ID=cds1854;Parent=gene1916;Dbxref=Genbank:WP_001265471.1;Name=WP_001265471.1;Note=response regulator in two-component regulatory system with PhoQ%3B involved in magnesium starvation and stress;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001265471.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1950351 1951721 . - . ID=gene1917;Name=SH04_RS09600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09600;old_locus_tag=SH04_09595 NZ_CP010443.1 Protein Homology CDS 1950351 1951721 . - 0 ID=cds1855;Parent=gene1917;Dbxref=Genbank:WP_000423742.1;Name=WP_000423742.1;Note=Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide;gbkey=CDS;product=adenylosuccinate lyase;protein_id=WP_000423742.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1951725 1952366 . - . ID=gene1918;Name=SH04_RS09605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09605;old_locus_tag=SH04_09600 NZ_CP010443.1 Protein Homology CDS 1951725 1952366 . - 0 ID=cds1856;Parent=gene1918;Dbxref=Genbank:WP_001297479.1;Name=WP_001297479.1;Note=HflD%3B UPF0274%3B in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein%3B in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis;gbkey=CDS;product=lysogenization regulator;protein_id=WP_001297479.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1952402 1953508 . - . ID=gene1919;Name=mnmA;gbkey=Gene;gene=mnmA;gene_biotype=protein_coding;locus_tag=SH04_RS09610;old_locus_tag=SH04_09605 NZ_CP010443.1 Protein Homology CDS 1952402 1953508 . - 0 ID=cds1857;Parent=gene1919;Dbxref=Genbank:WP_001297484.1;Name=WP_001297484.1;Note=catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs;gbkey=CDS;gene=mnmA;product=tRNA-specific 2-thiouridylase MnmA;protein_id=WP_001297484.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1953562 1954023 . - . ID=gene1920;Name=SH04_RS09615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09615;old_locus_tag=SH04_09610 NZ_CP010443.1 Protein Homology CDS 1953562 1954023 . - 0 ID=cds1858;Parent=gene1920;Dbxref=Genbank:WP_000476093.1;Name=WP_000476093.1;gbkey=CDS;product=phosphatase;protein_id=WP_000476093.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1954033 1954686 . - . ID=gene1921;Name=SH04_RS09620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09620;old_locus_tag=SH04_09615 NZ_CP010443.1 Protein Homology CDS 1954033 1954686 . - 0 ID=cds1859;Parent=gene1921;Dbxref=Genbank:WP_001248691.1;Name=WP_001248691.1;Note=catalyzes the formation of pseudouridine from uracil-2457 in 23S ribosomal RNA;gbkey=CDS;product=ribosomal large subunit pseudouridine synthase E;protein_id=WP_001248691.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1954858 1956108 . + . ID=gene1922;Name=SH04_RS09625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09625;old_locus_tag=SH04_09620 NZ_CP010443.1 Protein Homology CDS 1954858 1956108 . + 0 ID=cds1860;Parent=gene1922;Dbxref=Genbank:WP_000444488.1;Name=WP_000444488.1;Note=Converts isocitrate to alpha ketoglutarate;gbkey=CDS;product=isocitrate dehydrogenase;protein_id=WP_000444488.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1956211 1956534 . - . ID=gene1923;Name=SH04_RS09630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09630;old_locus_tag=SH04_09625 NZ_CP010443.1 Protein Homology CDS 1956211 1956534 . - 0 ID=cds1861;Parent=gene1923;Dbxref=Genbank:WP_001295666.1;Name=WP_001295666.1;Note=interacts RssB preventing the degradation of the stress sigma factor RpoS;gbkey=CDS;product=anti-adapter protein IraM;protein_id=WP_001295666.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1957071 1957181 . - . ID=gene1924;Name=SH04_RS09635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09635;old_locus_tag=SH04_09630 NZ_CP010443.1 Protein Homology CDS 1957071 1957181 . - 0 ID=cds1862;Parent=gene1924;Dbxref=Genbank:WP_032082692.1;Name=WP_032082692.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032082692.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1957234 1957638 . - . ID=gene1925;Name=SH04_RS09640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09640;old_locus_tag=SH04_09635 NZ_CP010443.1 Protein Homology CDS 1957234 1957638 . - 0 ID=cds1863;Parent=gene1925;Dbxref=Genbank:WP_000373101.1;Name=WP_000373101.1;gbkey=CDS;product=DUF1398 domain-containing protein;protein_id=WP_000373101.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1957859 1958590 . - . ID=gene1926;Name=SH04_RS09645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09645;old_locus_tag=SH04_09640 NZ_CP010443.1 Protein Homology CDS 1957859 1958590 . - 0 ID=cds1864;Parent=gene1926;Dbxref=Genbank:WP_000332303.1;Name=WP_000332303.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000332303.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1958795 1960006 . - . ID=gene1927;Name=SH04_RS09650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09650;old_locus_tag=SH04_09645 NZ_CP010443.1 Protein Homology CDS 1958795 1960006 . - 0 ID=cds1865;Parent=gene1927;Dbxref=Genbank:WP_001299269.1;Name=WP_001299269.1;gbkey=CDS;product=blue light- and temperature-regulated antirepressor BluF;protein_id=WP_001299269.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1960320 1960556 . + . ID=gene1928;Name=SH04_RS09655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09655;old_locus_tag=SH04_09650 NZ_CP010443.1 Protein Homology CDS 1960320 1960556 . + 0 ID=cds1866;Parent=gene1928;Dbxref=Genbank:WP_000554140.1;Name=WP_000554140.1;gbkey=CDS;product=two-component-system connector protein YcgZ;protein_id=WP_000554140.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1960599 1960871 . + . ID=gene1929;Name=SH04_RS09660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09660;old_locus_tag=SH04_09655 NZ_CP010443.1 Protein Homology CDS 1960599 1960871 . + 0 ID=cds1867;Parent=gene1929;Dbxref=Genbank:WP_000858002.1;Name=WP_000858002.1;gbkey=CDS;product=two-component-system connector protein YmgA;protein_id=WP_000858002.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1960900 1961166 . + . ID=gene1930;Name=SH04_RS09665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09665;old_locus_tag=SH04_09660 NZ_CP010443.1 Protein Homology CDS 1960900 1961166 . + 0 ID=cds1868;Parent=gene1930;Dbxref=Genbank:WP_000888772.1;Name=WP_000888772.1;gbkey=CDS;product=RcsB connector protein for regulation of biofilm and acid-resistance;protein_id=WP_000888772.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1961279 1961527 . + . ID=gene1931;Name=SH04_RS09670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09670;old_locus_tag=SH04_09665 NZ_CP010443.1 Protein Homology CDS 1961279 1961527 . + 0 ID=cds1869;Parent=gene1931;Dbxref=Genbank:WP_001065752.1;Name=WP_001065752.1;gbkey=CDS;product=Blue light%2C low temperature and stress induced protein;protein_id=WP_001065752.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1961859 1963382 . + . ID=gene1932;Name=SH04_RS09675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09675;old_locus_tag=SH04_09670 NZ_CP010443.1 Protein Homology CDS 1961859 1963382 . + 0 ID=cds1870;Parent=gene1932;Dbxref=Genbank:WP_001246499.1;Name=WP_001246499.1;gbkey=CDS;product=cyclic-di-GMP phosphodiesterase;protein_id=WP_001246499.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1963514 1963732 . + . ID=gene1933;Name=SH04_RS09680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09680;old_locus_tag=SH04_09675 NZ_CP010443.1 Protein Homology CDS 1963514 1963732 . + 0 ID=cds1871;Parent=gene1933;Dbxref=Genbank:WP_001065861.1;Name=WP_001065861.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001065861.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1963737 1963865 . - . ID=gene1934;Name=SH04_RS09685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09685;old_locus_tag=SH04_09680 NZ_CP010443.1 Protein Homology CDS 1963737 1963865 . - 0 ID=cds1872;Parent=gene1934;Dbxref=Genbank:WP_001299268.1;Name=WP_001299268.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001299268.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1964132 1966779 . + . ID=gene1935;Name=SH04_RS22860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS22860;pseudo=true NZ_CP010443.1 Protein Homology CDS 1964132 1966779 . + 0 ID=cds1873;Parent=gene1935;exception=annotated by transcript or proteomic data;gbkey=CDS;product=autotransporter;pseudo=true;transl_except=(pos:1965650..1965652%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 1966836 1967165 . - . ID=gene1936;Name=SH04_RS09700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09700;old_locus_tag=SH04_09695 NZ_CP010443.1 Protein Homology CDS 1966836 1967165 . - 0 ID=cds1874;Parent=gene1936;Dbxref=Genbank:WP_001295611.1;Name=WP_001295611.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295611.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1967175 1967519 . - . ID=gene1937;Name=SH04_RS09705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09705;old_locus_tag=SH04_09700 NZ_CP010443.1 Protein Homology CDS 1967175 1967519 . - 0 ID=cds1875;Parent=gene1937;Dbxref=Genbank:WP_000726974.1;Name=WP_000726974.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000726974.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1967521 1967694 . - . ID=gene1938;Name=SH04_RS09710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09710;old_locus_tag=SH04_09705 NZ_CP010443.1 Protein Homology CDS 1967521 1967694 . - 0 ID=cds1876;Parent=gene1938;Dbxref=Genbank:WP_000122462.1;Name=WP_000122462.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000122462.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 1968095 1968448 . + . ID=id124;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 1968113 1968438 . + . ID=gene1939;Name=SH04_RS09715;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS09715;pseudo=true NZ_CP010443.1 Protein Homology CDS 1968113 1968438 . + 0 ID=cds1877;Parent=gene1939;exception=annotated by transcript or proteomic data;gbkey=CDS;product=ATPase;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 1968810 1969076 . - . ID=gene1940;Name=minE;gbkey=Gene;gene=minE;gene_biotype=protein_coding;locus_tag=SH04_RS09720;old_locus_tag=SH04_09715 NZ_CP010443.1 Protein Homology CDS 1968810 1969076 . - 0 ID=cds1878;Parent=gene1940;Dbxref=Genbank:WP_001185665.1;Name=WP_001185665.1;Note=works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell;gbkey=CDS;gene=minE;product=cell division topological specificity factor;protein_id=WP_001185665.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1969080 1969892 . - . ID=gene1941;Name=SH04_RS09725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09725;old_locus_tag=SH04_09720 NZ_CP010443.1 Protein Homology CDS 1969080 1969892 . - 0 ID=cds1879;Parent=gene1941;Dbxref=Genbank:WP_000101055.1;Name=WP_000101055.1;Note=ATPase%3B with MinC inhibits cell division by blocking formation of the polar Z ring septums;gbkey=CDS;product=septum site-determining protein MinD;protein_id=WP_000101055.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1969916 1970611 . - . ID=gene1942;Name=minC;gbkey=Gene;gene=minC;gene_biotype=protein_coding;locus_tag=SH04_RS09730;old_locus_tag=SH04_09725 NZ_CP010443.1 Protein Homology CDS 1969916 1970611 . - 0 ID=cds1880;Parent=gene1942;Dbxref=Genbank:WP_001301105.1;Name=WP_001301105.1;Note=blocks the formation of polar Z-ring septums;gbkey=CDS;gene=minC;product=septum site-determining protein MinC;protein_id=WP_001301105.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1971131 1971499 . + . ID=gene1943;Name=SH04_RS09735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09735;old_locus_tag=SH04_09730 NZ_CP010443.1 Protein Homology CDS 1971131 1971499 . + 0 ID=cds1881;Parent=gene1943;Dbxref=Genbank:WP_001056840.1;Name=WP_001056840.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001056840.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1971602 1972003 . - . ID=gene1944;Name=SH04_RS09740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09740;old_locus_tag=SH04_09735 NZ_CP010443.1 Protein Homology CDS 1971602 1972003 . - 0 ID=cds1882;Parent=gene1944;Dbxref=Genbank:WP_000695215.1;Name=WP_000695215.1;gbkey=CDS;product=inhibitor of g-type lysozyme;protein_id=WP_000695215.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1971987 1972202 . + . ID=gene1945;Name=SH04_RS09745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09745;old_locus_tag=SH04_09740 NZ_CP010443.1 Protein Homology CDS 1971987 1972202 . + 0 ID=cds1883;Parent=gene1945;Dbxref=Genbank:WP_001350504.1;Name=WP_001350504.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001350504.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1972212 1972538 . + . ID=gene1946;Name=SH04_RS09750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09750;old_locus_tag=SH04_09745 NZ_CP010443.1 Protein Homology CDS 1972212 1972538 . + 0 ID=cds1884;Parent=gene1946;Dbxref=Genbank:WP_001125720.1;Name=WP_001125720.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001125720.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1972610 1973269 . + . ID=gene1947;Name=SH04_RS09755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09755;old_locus_tag=SH04_09750 NZ_CP010443.1 Protein Homology CDS 1972610 1973269 . + 0 ID=cds1885;Parent=gene1947;Dbxref=Genbank:WP_000284280.1;Name=WP_000284280.1;gbkey=CDS;product=isomerase/hydrolase;protein_id=WP_000284280.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1973346 1973807 . + . ID=gene1948;Name=SH04_RS09760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09760;old_locus_tag=SH04_09755 NZ_CP010443.1 Protein Homology CDS 1973346 1973807 . + 0 ID=cds1886;Parent=gene1948;Dbxref=Genbank:WP_000807626.1;Name=WP_000807626.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000807626.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1974014 1974925 . - . ID=gene1949;Name=hlyE;gbkey=Gene;gene=hlyE;gene_biotype=protein_coding;locus_tag=SH04_RS09765;old_locus_tag=SH04_09760 NZ_CP010443.1 Protein Homology CDS 1974014 1974925 . - 0 ID=cds1887;Parent=gene1949;Dbxref=Genbank:WP_001336523.1;Name=WP_001336523.1;Note=Acts by forming a pore-like structure upon contact with mammalian cells;gbkey=CDS;gene=hlyE;product=hemolysin E%2C chromosomal;protein_id=WP_001336523.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1975298 1975717 . + . ID=gene1950;Name=SH04_RS09770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09770;old_locus_tag=SH04_09765 NZ_CP010443.1 Protein Homology CDS 1975298 1975717 . + 0 ID=cds1888;Parent=gene1950;Dbxref=Genbank:WP_000897378.1;Name=WP_000897378.1;Note=binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC)%3B involved in translesion polymerization;gbkey=CDS;product=protein UmuD;protein_id=WP_000897378.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1975717 1976985 . + . ID=gene1951;Name=SH04_RS09775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09775;old_locus_tag=SH04_09770 NZ_CP010443.1 Protein Homology CDS 1975717 1976985 . + 0 ID=cds1889;Parent=gene1951;Dbxref=Genbank:WP_000457616.1;Name=WP_000457616.1;Note=binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC)%3B involved in translesion polymerization;gbkey=CDS;product=protein UmuC;protein_id=WP_000457616.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1977031 1977561 . - . ID=gene1952;Name=SH04_RS09780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09780;old_locus_tag=SH04_09775 NZ_CP010443.1 Protein Homology CDS 1977031 1977561 . - 0 ID=cds1890;Parent=gene1952;Dbxref=Genbank:WP_000943459.1;Name=WP_000943459.1;Note=disulfide oxidoreductase%3B integral membrane protein%3B required for perioplasmic disulfide bond formation%3B oxidizes DsbA protein;gbkey=CDS;product=disulfide bond formation protein B;protein_id=WP_000943459.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1977707 1979248 . - . ID=gene1953;Name=nhaB;gbkey=Gene;gene=nhaB;gene_biotype=protein_coding;locus_tag=SH04_RS09785;old_locus_tag=SH04_09780 NZ_CP010443.1 Protein Homology CDS 1977707 1979248 . - 0 ID=cds1891;Parent=gene1953;Dbxref=Genbank:WP_000406391.1;Name=WP_000406391.1;Note=involved in regulation of intracellular pH under alkaline conditions;gbkey=CDS;gene=nhaB;product=Na+/H+ antiporter NhaB;protein_id=WP_000406391.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1979469 1980188 . + . ID=gene1954;Name=SH04_RS09790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09790;old_locus_tag=SH04_09785 NZ_CP010443.1 Protein Homology CDS 1979469 1980188 . + 0 ID=cds1892;Parent=gene1954;Dbxref=Genbank:WP_000234823.1;Name=WP_000234823.1;Note=Multifunctional regulator of fatty acid metabolism;gbkey=CDS;product=fatty acid metabolism regulator protein;protein_id=WP_000234823.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1980240 1981772 . - . ID=gene1955;Name=SH04_RS09795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09795;old_locus_tag=SH04_09790 NZ_CP010443.1 Protein Homology CDS 1980240 1981772 . - 0 ID=cds1893;Parent=gene1955;Dbxref=Genbank:WP_000190854.1;Name=WP_000190854.1;gbkey=CDS;product=SpoVR family stationary phase;protein_id=WP_000190854.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1982102 1983400 . + . ID=gene1956;Name=SH04_RS09800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09800;old_locus_tag=SH04_09795 NZ_CP010443.1 Protein Homology CDS 1982102 1983400 . + 0 ID=cds1894;Parent=gene1956;Dbxref=Genbank:WP_001266908.1;Name=WP_001266908.1;Note=catalyzes the oxidative deamination of D-amino acids;gbkey=CDS;product=D-amino acid dehydrogenase;protein_id=WP_001266908.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1983410 1984480 . + . ID=gene1957;Name=SH04_RS09805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09805;old_locus_tag=SH04_09800 NZ_CP010443.1 Protein Homology CDS 1983410 1984480 . + 0 ID=cds1895;Parent=gene1957;Dbxref=Genbank:WP_000197881.1;Name=WP_000197881.1;Note=converts L-alanine to D-alanine which is used in cell wall biosynthesis%3B binds one pyridoxal phosphate per monomer%3B forms a homodimer;gbkey=CDS;product=alanine racemase catabolic;protein_id=WP_000197881.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1984866 1986602 . - . ID=gene1958;Name=cvrA;gbkey=Gene;gene=cvrA;gene_biotype=protein_coding;gene_synonym=nhaP2,ycgO;locus_tag=SH04_RS09810;old_locus_tag=SH04_09805 NZ_CP010443.1 Protein Homology CDS 1984866 1986602 . - 0 ID=cds1896;Parent=gene1958;Dbxref=Genbank:WP_000340194.1;Name=WP_000340194.1;Note=the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter%3B can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli;gbkey=CDS;gene=cvrA;product=K+/H+ antiporter NhaP2;protein_id=WP_000340194.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1986697 1987611 . - . ID=gene1959;Name=ldcA;gbkey=Gene;gene=ldcA;gene_biotype=protein_coding;locus_tag=SH04_RS09815;old_locus_tag=SH04_09810 NZ_CP010443.1 Protein Homology CDS 1986697 1987611 . - 0 ID=cds1897;Parent=gene1959;Dbxref=Genbank:WP_000051560.1;Name=WP_000051560.1;Note=catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine;gbkey=CDS;gene=ldcA;product=murein tetrapeptide carboxypeptidase;protein_id=WP_000051560.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1987711 1988322 . + . ID=gene1960;Name=emtA;gbkey=Gene;gene=emtA;gene_biotype=protein_coding;locus_tag=SH04_RS09820;old_locus_tag=SH04_09815 NZ_CP010443.1 Protein Homology CDS 1987711 1988322 . + 0 ID=cds1898;Parent=gene1960;Dbxref=Genbank:WP_001301104.1;Name=WP_001301104.1;Note=catalyzes the cleavage of 1-4 beta-glycoside linkaged between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan;gbkey=CDS;gene=emtA;product=murein transglycosylase;protein_id=WP_001301104.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1988324 1989058 . - . ID=gene1961;Name=SH04_RS09825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09825;old_locus_tag=SH04_09820 NZ_CP010443.1 Protein Homology CDS 1988324 1989058 . - 0 ID=cds1899;Parent=gene1961;Dbxref=Genbank:WP_000020169.1;Name=WP_000020169.1;gbkey=CDS;product=flagellar brake protein YcgR;protein_id=WP_000020169.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1989259 1989513 . + . ID=gene1962;Name=SH04_RS09830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09830;old_locus_tag=SH04_09825 NZ_CP010443.1 Protein Homology CDS 1989259 1989513 . + 0 ID=cds1900;Parent=gene1962;Dbxref=Genbank:WP_001310727.1;Name=WP_001310727.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001310727.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1989691 1990131 . + . ID=gene1963;Name=SH04_RS09835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09835;old_locus_tag=SH04_09830 NZ_CP010443.1 Protein Homology CDS 1989691 1990131 . + 0 ID=cds1901;Parent=gene1963;Dbxref=Genbank:WP_000615067.1;Name=WP_000615067.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000615067.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1990210 1991907 . - . ID=gene1964;Name=treA;gbkey=Gene;gene=treA;gene_biotype=protein_coding;locus_tag=SH04_RS09840;old_locus_tag=SH04_09835 NZ_CP010443.1 Protein Homology CDS 1990210 1991907 . - 0 ID=cds1902;Parent=gene1964;Dbxref=Genbank:WP_000841714.1;Name=WP_000841714.1;Note=periplasmic%3B catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell;gbkey=CDS;gene=treA;product=periplasmic trehalase;protein_id=WP_000841714.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1992227 1993645 . - . ID=gene1965;Name=SH04_RS09845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09845;old_locus_tag=SH04_09840 NZ_CP010443.1 Protein Homology CDS 1992227 1993645 . - 0 ID=cds1903;Parent=gene1965;Dbxref=Genbank:WP_001301101.1;Name=WP_001301101.1;Note=phosphotransferaese subunit%3B phosphorylates dihydroxyacetone along with DhaK/DhaL;gbkey=CDS;product=dihydroxyacetone kinase subunit DhaM;protein_id=WP_001301101.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1993656 1994288 . - . ID=gene1966;Name=SH04_RS09850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09850;old_locus_tag=SH04_09845 NZ_CP010443.1 Protein Homology CDS 1993656 1994288 . - 0 ID=cds1904;Parent=gene1966;Dbxref=Genbank:WP_000059411.1;Name=WP_000059411.1;Note=with DhaK and DhaM catalyzes the phosphorylation of dihydroxyacetone;gbkey=CDS;product=dihydroxyacetone kinase subunit DhaL;protein_id=WP_000059411.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1994299 1995369 . - . ID=gene1967;Name=SH04_RS09855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09855;old_locus_tag=SH04_09850 NZ_CP010443.1 Protein Homology CDS 1994299 1995369 . - 0 ID=cds1905;Parent=gene1967;Dbxref=Genbank:WP_000733715.1;Name=WP_000733715.1;Note=with DhaL and DhaM forms dihydroxyacetone kinase%2C which is responsible for phosphorylating dihydroxyacetone%3B DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase;gbkey=CDS;product=dihydroxyacetone kinase subunit DhaK;protein_id=WP_000733715.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1995597 1997516 . + . ID=gene1968;Name=SH04_RS09860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09860;old_locus_tag=SH04_09855 NZ_CP010443.1 Protein Homology CDS 1995597 1997516 . + 0 ID=cds1906;Parent=gene1968;Dbxref=Genbank:WP_001350505.1;Name=WP_001350505.1;Note=Positively regulates the dhaKLM operon from a sigma-70 promoter;gbkey=CDS;product=dihydroxyacetone kinase subunit DhaR;protein_id=WP_001350505.1;transl_table=11 NZ_CP010443.1 RefSeq gene 1997616 2000483 . - . ID=gene1969;Name=SH04_RS09865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09865;old_locus_tag=SH04_09860 NZ_CP010443.1 Protein Homology CDS 1997616 2000483 . - 0 ID=cds1907;Parent=gene1969;Dbxref=Genbank:WP_001334788.1;Name=WP_001334788.1;gbkey=CDS;product=adhesin;protein_id=WP_001334788.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2000828 2001007 . + . ID=gene1970;Name=SH04_RS09870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09870;old_locus_tag=SH04_09865 NZ_CP010443.1 Protein Homology CDS 2000828 2001007 . + 0 ID=cds1908;Parent=gene1970;Dbxref=Genbank:WP_000280737.1;Name=WP_000280737.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000280737.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2001252 2002343 . - . ID=gene1971;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=SH04_RS09875;old_locus_tag=SH04_09870 NZ_CP010443.1 Protein Homology CDS 2001252 2002343 . - 0 ID=cds1909;Parent=gene1971;Dbxref=Genbank:WP_000505866.1;Name=WP_000505866.1;Note=EngD%3B translation-associated GTPase%3B the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3)%3B fluorescence spectroscopy revealed nucleic acid binding%3B the yeast protein YBR025c interacts with the translation elongation factor eEF1;gbkey=CDS;gene=ychF;product=ribosome-binding ATPase YchF;protein_id=WP_000505866.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2002460 2003044 . - . ID=gene1972;Name=SH04_RS09880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09880;old_locus_tag=SH04_09875 NZ_CP010443.1 Protein Homology CDS 2002460 2003044 . - 0 ID=cds1910;Parent=gene1972;Dbxref=Genbank:WP_000152933.1;Name=WP_000152933.1;gbkey=CDS;product=peptidyl-tRNA hydrolase;protein_id=WP_000152933.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2003322 2003600 . + . ID=gene1973;Name=SH04_RS09885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09885;old_locus_tag=SH04_09880 NZ_CP010443.1 Protein Homology CDS 2003322 2003600 . + 0 ID=cds1911;Parent=gene1973;Dbxref=Genbank:WP_000823885.1;Name=WP_000823885.1;Note=YchH%3B transcription activated by CRP (cyclic AMP receptor protein)%2C a global transcription factor involved in regulation of metabolism in enteric bacteria%3B ychH presents a class II promoter to bind CRP%3B unknown function;gbkey=CDS;product=membrane protein;protein_id=WP_000823885.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2003655 2005307 . - . ID=gene1974;Name=SH04_RS09890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09890;old_locus_tag=SH04_09885 NZ_CP010443.1 Protein Homology CDS 2003655 2005307 . - 0 ID=cds1912;Parent=gene1974;Dbxref=Genbank:WP_001300632.1;Name=WP_001300632.1;Note=role in sulfate transport across the inner membrane%3B member of the SulP family of sulfate transporters%3B seems to mediate transport via sulfate/proton symport;gbkey=CDS;product=transporter;protein_id=WP_001300632.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2005459 2006406 . - . ID=gene1975;Name=SH04_RS09895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09895;old_locus_tag=SH04_09890 NZ_CP010443.1 Protein Homology CDS 2005459 2006406 . - 0 ID=cds1913;Parent=gene1975;Dbxref=Genbank:WP_001298109.1;Name=WP_001298109.1;Note=catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP;gbkey=CDS;product=ribose-phosphate pyrophosphokinase;protein_id=WP_001298109.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2006557 2007408 . - . ID=gene1976;Name=SH04_RS09900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09900;old_locus_tag=SH04_09895 NZ_CP010443.1 Protein Homology CDS 2006557 2007408 . - 0 ID=cds1914;Parent=gene1976;Dbxref=Genbank:WP_001260332.1;Name=WP_001260332.1;gbkey=CDS;product=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;protein_id=WP_001260332.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2007408 2008031 . - . ID=gene1977;Name=lolB;gbkey=Gene;gene=lolB;gene_biotype=protein_coding;locus_tag=SH04_RS09905;old_locus_tag=SH04_09900 NZ_CP010443.1 Protein Homology CDS 2007408 2008031 . - 0 ID=cds1915;Parent=gene1977;Dbxref=Genbank:WP_001130692.1;Name=WP_001130692.1;Note=Incorporates lipoproteins in the outer membrane after they are released by the LolA protein;gbkey=CDS;gene=lolB;product=outer membrane lipoprotein LolB;protein_id=WP_001130692.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2008245 2009501 . + . ID=gene1978;Name=hemA;gbkey=Gene;gene=hemA;gene_biotype=protein_coding;locus_tag=SH04_RS09910;old_locus_tag=SH04_09905 NZ_CP010443.1 Protein Homology CDS 2008245 2009501 . + 0 ID=cds1916;Parent=gene1978;Dbxref=Genbank:WP_001299679.1;Name=WP_001299679.1;Note=catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH%3B the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid%3B functions in porphyrin (tetrapyrroles) biosynthesis%3B the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins;gbkey=CDS;gene=hemA;product=glutamyl-tRNA reductase;protein_id=WP_001299679.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2009543 2010625 . + . ID=gene1979;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=SH04_RS09915;old_locus_tag=SH04_09910 NZ_CP010443.1 Protein Homology CDS 2009543 2010625 . + 0 ID=cds1917;Parent=gene1979;Dbxref=Genbank:WP_000804726.1;Name=WP_000804726.1;Note=recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1%3B this protein is similar to release factor 2;gbkey=CDS;gene=prfA;product=peptide chain release factor 1;protein_id=WP_000804726.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2010625 2011458 . + . ID=gene1980;Name=SH04_RS09920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09920;old_locus_tag=SH04_09915 NZ_CP010443.1 Protein Homology CDS 2010625 2011458 . + 0 ID=cds1918;Parent=gene1980;Dbxref=Genbank:WP_000456467.1;Name=WP_000456467.1;Note=HemK%3B PrmC%3B transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB;gbkey=CDS;product=release factor glutamine methyltransferase;protein_id=WP_000456467.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2011455 2011847 . + . ID=gene1981;Name=SH04_RS09925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09925;old_locus_tag=SH04_09920 NZ_CP010443.1 Protein Homology CDS 2011455 2011847 . + 0 ID=cds1919;Parent=gene1981;Dbxref=Genbank:WP_000200374.1;Name=WP_000200374.1;gbkey=CDS;product=protein sirB2;protein_id=WP_000200374.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2011851 2012660 . + . ID=gene1982;Name=SH04_RS09930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09930;old_locus_tag=SH04_09925 NZ_CP010443.1 Protein Homology CDS 2011851 2012660 . + 0 ID=cds1920;Parent=gene1982;Dbxref=Genbank:WP_001257044.1;Name=WP_001257044.1;gbkey=CDS;product=protein sirB1;protein_id=WP_001257044.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2012696 2013550 . + . ID=gene1983;Name=SH04_RS09935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09935;old_locus_tag=SH04_09930 NZ_CP010443.1 Protein Homology CDS 2012696 2013550 . + 0 ID=cds1921;Parent=gene1983;Dbxref=Genbank:WP_000811065.1;Name=WP_000811065.1;Note=catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis;gbkey=CDS;product=2-dehydro-3-deoxyphosphooctonate aldolase;protein_id=WP_000811065.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2013616 2014076 . + . ID=id125;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2013699 2013833 . - . ID=gene1984;Name=SH04_RS09940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09940;old_locus_tag=SH04_09935 NZ_CP010443.1 Protein Homology CDS 2013699 2013833 . - 0 ID=cds1922;Parent=gene1984;Dbxref=Genbank:WP_000950183.1;Name=WP_000950183.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000950183.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2014151 2014610 . + . ID=id126;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2014234 2014368 . - . ID=gene1985;Name=SH04_RS09945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09945;old_locus_tag=SH04_09940 NZ_CP010443.1 Protein Homology CDS 2014234 2014368 . - 0 ID=cds1923;Parent=gene1985;Dbxref=Genbank:WP_000950182.1;Name=WP_000950182.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000950182.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2014745 2015845 . - . ID=gene1986;Name=SH04_RS09950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09950;old_locus_tag=SH04_09945 NZ_CP010443.1 Protein Homology CDS 2014745 2015845 . - 0 ID=cds1924;Parent=gene1986;Dbxref=Genbank:WP_000063607.1;Name=WP_000063607.1;gbkey=CDS;product=sodium/proton antiporter ChaA;protein_id=WP_000063607.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2016115 2016345 . + . ID=gene1987;Name=chaB;gbkey=Gene;gene=chaB;gene_biotype=protein_coding;locus_tag=SH04_RS09955;old_locus_tag=SH04_09950 NZ_CP010443.1 Protein Homology CDS 2016115 2016345 . + 0 ID=cds1925;Parent=gene1987;Dbxref=Genbank:WP_001146444.1;Name=WP_001146444.1;Note=in Escherichia coli this protein putatively regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA%3B has weak affinity for calcium and magnesium ions;gbkey=CDS;gene=chaB;product=cation transport regulator ChaB;protein_id=WP_001146444.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2016503 2017198 . + . ID=gene1988;Name=SH04_RS09960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09960;old_locus_tag=SH04_09955 NZ_CP010443.1 Protein Homology CDS 2016503 2017198 . + 0 ID=cds1926;Parent=gene1988;Dbxref=Genbank:WP_001336325.1;Name=WP_001336325.1;gbkey=CDS;product=glutathione-specific gamma-glutamylcyclotransferase;protein_id=WP_001336325.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2017242 2017595 . - . ID=gene1989;Name=SH04_RS09965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09965;old_locus_tag=SH04_09960 NZ_CP010443.1 Protein Homology CDS 2017242 2017595 . - 0 ID=cds1927;Parent=gene1989;Dbxref=Genbank:WP_001169669.1;Name=WP_001169669.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001169669.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2017780 2019174 . + . ID=gene1990;Name=SH04_RS09970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09970;old_locus_tag=SH04_09965 NZ_CP010443.1 Protein Homology CDS 2017780 2019174 . + 0 ID=cds1928;Parent=gene1990;Dbxref=Genbank:WP_000086217.1;Name=WP_000086217.1;gbkey=CDS;product=invasin;protein_id=WP_000086217.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2019175 2019825 . - . ID=gene1991;Name=SH04_RS09975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09975;old_locus_tag=SH04_09970 NZ_CP010443.1 Protein Homology CDS 2019175 2019825 . - 0 ID=cds1929;Parent=gene1991;Dbxref=Genbank:WP_000070491.1;Name=WP_000070491.1;Note=two-component response regulator NarL%3B phosphorylated by NarQ%3B activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000070491.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2019818 2021614 . - . ID=gene1992;Name=SH04_RS09980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09980;old_locus_tag=SH04_09975 NZ_CP010443.1 Protein Homology CDS 2019818 2021614 . - 0 ID=cds1930;Parent=gene1992;Dbxref=Genbank:WP_000918073.1;Name=WP_000918073.1;gbkey=CDS;product=nitrate/nitrite two-component system sensor histidine kinase;protein_id=WP_000918073.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2021640 2021858 . + . ID=gene1993;Name=SH04_RS09985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09985;old_locus_tag=SH04_09980 NZ_CP010443.1 Protein Homology CDS 2021640 2021858 . + 0 ID=cds1931;Parent=gene1993;Dbxref=Genbank:WP_000069500.1;Name=WP_000069500.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000069500.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2021953 2023344 . + . ID=gene1994;Name=SH04_RS09990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS09990;old_locus_tag=SH04_09985 NZ_CP010443.1 Protein Homology CDS 2021953 2023344 . + 0 ID=cds1932;Parent=gene1994;Dbxref=Genbank:WP_000019827.1;Name=WP_000019827.1;Note=involved in the transport of nitrate and nitrite;gbkey=CDS;product=nitrate/nitrite transporter NarK;protein_id=WP_000019827.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2023860 2027603 . + . ID=gene1995;Name=narZ;gbkey=Gene;gene=narZ;gene_biotype=protein_coding;locus_tag=SH04_RS09995;old_locus_tag=SH04_09990 NZ_CP010443.1 Protein Homology CDS 2023860 2027603 . + 0 ID=cds1933;Parent=gene1995;Dbxref=Genbank:WP_000032939.1;Name=WP_000032939.1;Note=with NarYV catalyzes the reduction of nitrate%3B the beta subunit is an iron sulfur cluster containing electron transfer subunit%3B one of 3 nitrate reductases in E. coli%3B expression of nitrate reductase Z is not dependent on nitrate levels;gbkey=CDS;gene=narZ;product=respiratory nitrate reductase 1 alpha chain;protein_id=WP_000032939.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2027600 2029138 . + . ID=gene1996;Name=narH;gbkey=Gene;gene=narH;gene_biotype=protein_coding;locus_tag=SH04_RS10000;old_locus_tag=SH04_09995 NZ_CP010443.1 Protein Homology CDS 2027600 2029138 . + 0 ID=cds1934;Parent=gene1996;Dbxref=Genbank:WP_000702650.1;Name=WP_000702650.1;Note=with NarGJI catalyzes the reduction of nitrate%3B the beta subunit is an iron sulfur cluster containing electron transfer subunit%3B one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high;gbkey=CDS;gene=narH;product=nitrate reductase subunit beta;protein_id=WP_000702650.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2029135 2029845 . + . ID=gene1997;Name=SH04_RS10005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10005;old_locus_tag=SH04_10000 NZ_CP010443.1 Protein Homology CDS 2029135 2029845 . + 0 ID=cds1935;Parent=gene1997;Dbxref=Genbank:WP_000571681.1;Name=WP_000571681.1;Note=delta subunit of nitrate reductase 1%3B chaperone for the insertion of the molybdenum cofactor and assembly of nitrate reductase 1;gbkey=CDS;product=nitrate reductase molybdenum cofactor assembly chaperone NarJ;protein_id=WP_000571681.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2029845 2030522 . + . ID=gene1998;Name=narI;gbkey=Gene;gene=narI;gene_biotype=protein_coding;locus_tag=SH04_RS10010;old_locus_tag=SH04_10005 NZ_CP010443.1 Protein Homology CDS 2029845 2030522 . + 0 ID=cds1936;Parent=gene1998;Dbxref=Genbank:WP_001160108.1;Name=WP_001160108.1;Note=with NarGJH catalyzes the reduction of nitrate%3B the gamma subunit localizes NarGHI to the membrane%3B one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high;gbkey=CDS;gene=narI;product=respiratory nitrate reductase subunit gamma;protein_id=WP_001160108.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2030704 2031258 . + . ID=id127;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2030705 2030980 . + . ID=gene1999;Name=SH04_RS10015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10015;old_locus_tag=SH04_10010 NZ_CP010443.1 Protein Homology CDS 2030705 2030980 . + 0 ID=cds1937;Parent=gene1999;Dbxref=Genbank:WP_000260154.1;Name=WP_000260154.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000260154.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2031240 2031324 . - . ID=gene2000;Name=SH04_RS10020;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS10020;old_locus_tag=SH04_10015 NZ_CP010443.1 tRNAscan-SE tRNA 2031240 2031324 . - . ID=rna62;Parent=gene2000;anticodon=(pos:complement(2031288..2031290));gbkey=tRNA;product=tRNA-Tyr NZ_CP010443.1 tRNAscan-SE exon 2031240 2031324 . - . ID=id128;Parent=rna62;anticodon=(pos:complement(2031288..2031290));gbkey=tRNA;product=tRNA-Tyr NZ_CP010443.1 RefSeq gene 2031534 2031618 . - . ID=gene2001;Name=SH04_RS10025;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS10025;old_locus_tag=SH04_10020 NZ_CP010443.1 tRNAscan-SE tRNA 2031534 2031618 . - . ID=rna63;Parent=gene2001;anticodon=(pos:complement(2031582..2031584));gbkey=tRNA;product=tRNA-Tyr NZ_CP010443.1 tRNAscan-SE exon 2031534 2031618 . - . ID=id129;Parent=rna63;anticodon=(pos:complement(2031582..2031584));gbkey=tRNA;product=tRNA-Tyr NZ_CP010443.1 RefSeq gene 2031778 2032620 . - . ID=gene2002;Name=SH04_RS10030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10030;old_locus_tag=SH04_10025 NZ_CP010443.1 Protein Homology CDS 2031778 2032620 . - 0 ID=cds1938;Parent=gene2002;Dbxref=Genbank:WP_000555857.1;Name=WP_000555857.1;gbkey=CDS;product=formyltetrahydrofolate deformylase;protein_id=WP_000555857.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2032670 2033128 . - . ID=gene2003;Name=SH04_RS10035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10035;old_locus_tag=SH04_10030 NZ_CP010443.1 Protein Homology CDS 2032670 2033128 . - 0 ID=cds1939;Parent=gene2003;Dbxref=Genbank:WP_001307143.1;Name=WP_001307143.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001307143.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2033241 2034146 . + . ID=gene2004;Name=SH04_RS10040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10040;old_locus_tag=SH04_10035 NZ_CP010443.1 Protein Homology CDS 2033241 2034146 . + 0 ID=cds1940;Parent=gene2004;Dbxref=Genbank:WP_001295622.1;Name=WP_001295622.1;gbkey=CDS;product=NTE family protein RssA;protein_id=WP_001295622.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2034238 2035251 . + . ID=gene2005;Name=SH04_RS10045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10045;old_locus_tag=SH04_10040 NZ_CP010443.1 Protein Homology CDS 2034238 2035251 . + 0 ID=cds1941;Parent=gene2005;Dbxref=Genbank:WP_000193447.1;Name=WP_000193447.1;gbkey=CDS;product=regulator of RpoS;protein_id=WP_000193447.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2035453 2036361 . + . ID=gene2006;Name=SH04_RS10050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10050;old_locus_tag=SH04_10045 NZ_CP010443.1 Protein Homology CDS 2035453 2036361 . + 0 ID=cds1942;Parent=gene2006;Dbxref=Genbank:WP_000718995.1;Name=WP_000718995.1;Note=together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase%2C an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate%3B regulates cellular levels of UDP-glucose;gbkey=CDS;product=UTP--glucose-1-phosphate uridylyltransferase;protein_id=WP_000718995.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2036505 2036918 . - . ID=gene2007;Name=SH04_RS10055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10055;old_locus_tag=SH04_10050 NZ_CP010443.1 Protein Homology CDS 2036505 2036918 . - 0 ID=cds1943;Parent=gene2007;Dbxref=Genbank:WP_001287378.1;Name=WP_001287378.1;gbkey=CDS;product=DNA-binding protein H-NS;protein_id=WP_001287378.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2037523 2038140 . + . ID=gene2008;Name=SH04_RS10060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10060;old_locus_tag=SH04_10055 NZ_CP010443.1 Protein Homology CDS 2037523 2038140 . + 0 ID=cds1944;Parent=gene2008;Dbxref=Genbank:WP_000068077.1;Name=WP_000068077.1;Note=catalyzes the formation of thymidine 5'-phosphate from thymidine;gbkey=CDS;product=thymidine kinase;protein_id=WP_000068077.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2038422 2039012 . - . ID=gene2009;Name=SH04_RS10065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10065;old_locus_tag=SH04_10060 NZ_CP010443.1 Protein Homology CDS 2038422 2039012 . - 0 ID=cds1945;Parent=gene2009;Dbxref=Genbank:WP_001326299.1;Name=WP_001326299.1;gbkey=CDS;product=transposase;protein_id=WP_001326299.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2038957 2039273 . - . ID=gene2010;Name=SH04_RS10070;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS10070;pseudo=true NZ_CP010443.1 Protein Homology CDS 2038957 2039273 . - 0 ID=cds1946;Parent=gene2010;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(2039133..2039135)%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 2039442 2042117 . - . ID=gene2011;Name=SH04_RS10075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10075;old_locus_tag=SH04_10070 NZ_CP010443.1 Protein Homology CDS 2039442 2042117 . - 0 ID=cds1947;Parent=gene2011;Dbxref=Genbank:WP_000301651.1;Name=WP_000301651.1;gbkey=CDS;product=aldehyde-alcohol dehydrogenase;protein_id=WP_000301651.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2042594 2043241 . + . ID=gene2012;Name=SH04_RS10080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10080;old_locus_tag=SH04_10075 NZ_CP010443.1 Protein Homology CDS 2042594 2043241 . + 0 ID=cds1948;Parent=gene2012;Dbxref=Genbank:WP_000616554.1;Name=WP_000616554.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000616554.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2043979 2045610 . + . ID=gene2013;Name=SH04_RS10085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10085;old_locus_tag=SH04_10080 NZ_CP010443.1 Protein Homology CDS 2043979 2045610 . + 0 ID=cds1949;Parent=gene2013;Dbxref=Genbank:WP_001407612.1;Name=WP_001407612.1;Note=is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_001407612.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2045696 2046616 . + . ID=gene2014;Name=oppB;gbkey=Gene;gene=oppB;gene_biotype=protein_coding;locus_tag=SH04_RS10090;old_locus_tag=SH04_10085 NZ_CP010443.1 Protein Homology CDS 2045696 2046616 . + 0 ID=cds1950;Parent=gene2014;Dbxref=Genbank:WP_000911112.1;Name=WP_000911112.1;gbkey=CDS;gene=oppB;product=peptide ABC transporter permease;protein_id=WP_000911112.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2046631 2047539 . + . ID=gene2015;Name=SH04_RS10095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10095;old_locus_tag=SH04_10090 NZ_CP010443.1 Protein Homology CDS 2046631 2047539 . + 0 ID=cds1951;Parent=gene2015;Dbxref=Genbank:WP_000979661.1;Name=WP_000979661.1;Note=with OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_000979661.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2047551 2048564 . + . ID=gene2016;Name=oppD;gbkey=Gene;gene=oppD;gene_biotype=protein_coding;locus_tag=SH04_RS10100;old_locus_tag=SH04_10095 NZ_CP010443.1 Protein Homology CDS 2047551 2048564 . + 0 ID=cds1952;Parent=gene2016;Dbxref=Genbank:WP_000110948.1;Name=WP_000110948.1;gbkey=CDS;gene=oppD;product=oligopeptide transport ATP-binding protein OppD;protein_id=WP_000110948.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2048561 2049565 . + . ID=gene2017;Name=SH04_RS10105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10105;old_locus_tag=SH04_10100 NZ_CP010443.1 Protein Homology CDS 2048561 2049565 . + 0 ID=cds1953;Parent=gene2017;Dbxref=Genbank:WP_000994905.1;Name=WP_000994905.1;Note=with OppABCD is involved in the transport of oligopeptides%3B OppF and OppD are ATP-binding proteins;gbkey=CDS;product=oligopeptide transport ATP-binding protein OppF;protein_id=WP_000994905.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2049618 2049947 . - . ID=gene2018;Name=SH04_RS10110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10110;old_locus_tag=SH04_10105 NZ_CP010443.1 Protein Homology CDS 2049618 2049947 . - 0 ID=cds1954;Parent=gene2018;Dbxref=Genbank:WP_000366959.1;Name=WP_000366959.1;Note=highly acidic protein%3B the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi)%3B binds heat-unstable protein (HU-alpha) which is a histone-like protein;gbkey=CDS;product=hypothetical protein;protein_id=WP_000366959.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2049982 2051442 . - . ID=gene2019;Name=cls;gbkey=Gene;gene=cls;gene_biotype=protein_coding;locus_tag=SH04_RS10115;old_locus_tag=SH04_10110 NZ_CP010443.1 Protein Homology CDS 2049982 2051442 . - 0 ID=cds1955;Parent=gene2019;Dbxref=Genbank:WP_000214516.1;Name=WP_000214516.1;Note=catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol);gbkey=CDS;gene=cls;product=cardiolipin synthase;protein_id=WP_000214516.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2051474 2051758 . + . ID=gene2020;Name=SH04_RS10120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10120;old_locus_tag=SH04_10115 NZ_CP010443.1 Protein Homology CDS 2051474 2051758 . + 0 ID=cds1956;Parent=gene2020;Dbxref=Genbank:WP_001303937.1;Name=WP_001303937.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303937.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2051813 2053066 . - . ID=gene2021;Name=SH04_RS10125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10125;old_locus_tag=SH04_10120 NZ_CP010443.1 Protein Homology CDS 2051813 2053066 . - 0 ID=cds1957;Parent=gene2021;Dbxref=Genbank:WP_001295624.1;Name=WP_001295624.1;gbkey=CDS;product=voltage-gated potassium channel Kch;protein_id=WP_001295624.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2053366 2053662 . - . ID=gene2022;Name=SH04_RS10130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10130;old_locus_tag=SH04_10125 NZ_CP010443.1 Protein Homology CDS 2053366 2053662 . - 0 ID=cds1958;Parent=gene2022;Dbxref=Genbank:WP_000967595.1;Name=WP_000967595.1;Note=unknown function%3B YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase%2C but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity;gbkey=CDS;product=hypothetical protein;protein_id=WP_000967595.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2053886 2054605 . + . ID=gene2023;Name=SH04_RS10135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10135;old_locus_tag=SH04_10130 NZ_CP010443.1 Protein Homology CDS 2053886 2054605 . + 0 ID=cds1959;Parent=gene2023;Dbxref=Genbank:WP_001360141.1;Name=WP_001360141.1;Note=membrane spanning protein in TonB-ExbB-ExbD complex%3B transduces proton motive force of the cytoplasmic membrane to outer membrane transporters%3B involved in the transport of ron-siderophore complexes%2C vitamin B12 and colicins;gbkey=CDS;product=protein TonB;protein_id=WP_001360141.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2054645 2055043 . - . ID=gene2024;Name=SH04_RS10140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10140;old_locus_tag=SH04_10135 NZ_CP010443.1 Protein Homology CDS 2054645 2055043 . - 0 ID=cds1960;Parent=gene2024;Dbxref=Genbank:WP_000108160.1;Name=WP_000108160.1;gbkey=CDS;product=acyl-CoA thioester hydrolase YciA;protein_id=WP_000108160.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2055148 2055687 . - . ID=gene2025;Name=SH04_RS10145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10145;old_locus_tag=SH04_10140 NZ_CP010443.1 Protein Homology CDS 2055148 2055687 . - 0 ID=cds1961;Parent=gene2025;Dbxref=Genbank:WP_000808667.1;Name=WP_000808667.1;Note=Involved in cell division%3B probably involved in intracellular septation;gbkey=CDS;product=intracellular septation protein A;protein_id=WP_000808667.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2055717 2056460 . - . ID=gene2026;Name=SH04_RS10150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10150;old_locus_tag=SH04_10145 NZ_CP010443.1 Protein Homology CDS 2055717 2056460 . - 0 ID=cds1962;Parent=gene2026;Dbxref=Genbank:WP_000028545.1;Name=WP_000028545.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000028545.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2056817 2057455 . + . ID=gene2027;Name=SH04_RS10155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10155;old_locus_tag=SH04_10150 NZ_CP010443.1 Protein Homology CDS 2056817 2057455 . + 0 ID=cds1963;Parent=gene2027;Dbxref=Genbank:WP_000737226.1;Name=WP_000737226.1;Note=receptor for colicin S4;gbkey=CDS;product=outer membrane protein W;protein_id=WP_000737226.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2057515 2058021 . - . ID=gene2028;Name=SH04_RS10160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10160;old_locus_tag=SH04_10155 NZ_CP010443.1 Protein Homology CDS 2057515 2058021 . - 0 ID=cds1964;Parent=gene2028;Dbxref=Genbank:WP_001079505.1;Name=WP_001079505.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001079505.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2058067 2058567 . - . ID=gene2029;Name=SH04_RS10165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10165;old_locus_tag=SH04_10160 NZ_CP010443.1 Protein Homology CDS 2058067 2058567 . - 0 ID=cds1965;Parent=gene2029;Dbxref=Genbank:WP_001056490.1;Name=WP_001056490.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001056490.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2058653 2058832 . - . ID=gene2030;Name=SH04_RS10170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10170;old_locus_tag=SH04_10165 NZ_CP010443.1 Protein Homology CDS 2058653 2058832 . - 0 ID=cds1966;Parent=gene2030;Dbxref=Genbank:WP_000807651.1;Name=WP_000807651.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000807651.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2059213 2060019 . - . ID=gene2031;Name=SH04_RS10175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10175;old_locus_tag=SH04_10170 NZ_CP010443.1 Protein Homology CDS 2059213 2060019 . - 0 ID=cds1967;Parent=gene2031;Dbxref=Genbank:WP_000443067.1;Name=WP_000443067.1;gbkey=CDS;product=tryptophan synthase subunit alpha;protein_id=WP_000443067.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2060019 2061212 . - . ID=gene2032;Name=SH04_RS10180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10180;old_locus_tag=SH04_10175 NZ_CP010443.1 Protein Homology CDS 2060019 2061212 . - 0 ID=cds1968;Parent=gene2032;Dbxref=Genbank:WP_000209520.1;Name=WP_000209520.1;Note=catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate;gbkey=CDS;product=tryptophan synthase subunit beta;protein_id=WP_000209520.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2061224 2062582 . - . ID=gene2033;Name=SH04_RS10185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10185;old_locus_tag=SH04_10180 NZ_CP010443.1 Protein Homology CDS 2061224 2062582 . - 0 ID=cds1969;Parent=gene2033;Dbxref=Genbank:WP_001340286.1;Name=WP_001340286.1;Note=monomeric bifunctional protein%3B functions in tryptophan biosynthesis pathway%3B phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate;gbkey=CDS;product=phosphoribosylanthranilate isomerase;protein_id=WP_001340286.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2062586 2064181 . - . ID=gene2034;Name=SH04_RS10190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10190;old_locus_tag=SH04_10185 NZ_CP010443.1 Protein Homology CDS 2062586 2064181 . - 0 ID=cds1970;Parent=gene2034;Dbxref=Genbank:WP_000763511.1;Name=WP_000763511.1;Note=bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase%3B TrpD%3B forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine%3B also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate%3B functions in tryptophan biosynthesis;gbkey=CDS;product=bifunctional protein TrpGD;protein_id=WP_000763511.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2064181 2065743 . - . ID=gene2035;Name=SH04_RS10195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10195;old_locus_tag=SH04_10190 NZ_CP010443.1 Protein Homology CDS 2064181 2065743 . - 0 ID=cds1971;Parent=gene2035;Dbxref=Genbank:WP_001194582.1;Name=WP_001194582.1;gbkey=CDS;product=anthranilate synthase component 1;protein_id=WP_001194582.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2066017 2066898 . + . ID=gene2036;Name=SH04_RS10200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10200;old_locus_tag=SH04_10195 NZ_CP010443.1 Protein Homology CDS 2066017 2066898 . + 0 ID=cds1972;Parent=gene2036;Dbxref=Genbank:WP_001285661.1;Name=WP_001285661.1;gbkey=CDS;product=PHP domain-containing protein YciV;protein_id=WP_001285661.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2066895 2067515 . + . ID=gene2037;Name=SH04_RS10205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10205;old_locus_tag=SH04_10200 NZ_CP010443.1 Protein Homology CDS 2066895 2067515 . + 0 ID=cds1973;Parent=gene2037;Dbxref=Genbank:WP_001295575.1;Name=WP_001295575.1;gbkey=CDS;product=RNA binding protein;protein_id=WP_001295575.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2067543 2069438 . + . ID=gene2038;Name=SH04_RS10210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10210;old_locus_tag=SH04_10205 NZ_CP010443.1 Protein Homology CDS 2067543 2069438 . + 0 ID=cds1974;Parent=gene2038;Dbxref=Genbank:WP_001326916.1;Name=WP_001326916.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001326916.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2069649 2070524 . + . ID=gene2039;Name=SH04_RS10215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10215;old_locus_tag=SH04_10210 NZ_CP010443.1 Protein Homology CDS 2069649 2070524 . + 0 ID=cds1975;Parent=gene2039;Dbxref=Genbank:WP_001291217.1;Name=WP_001291217.1;Note=catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA;gbkey=CDS;product=ribosomal large subunit pseudouridine synthase B;protein_id=WP_001291217.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2070564 2071154 . - . ID=gene2040;Name=SH04_RS10220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10220;old_locus_tag=SH04_10215 NZ_CP010443.1 Protein Homology CDS 2070564 2071154 . - 0 ID=cds1976;Parent=gene2040;Dbxref=Genbank:WP_001278906.1;Name=WP_001278906.1;Note=catalyzes the formation of adenosylcobalamide from cobinamide and the formation of coenzyme B12 from cob(I)alamin;gbkey=CDS;product=cob(I)yrinic acid a%2Cc-diamide adenosyltransferase;protein_id=WP_001278906.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2071151 2071909 . - . ID=gene2041;Name=SH04_RS10225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10225;old_locus_tag=SH04_10220 NZ_CP010443.1 Protein Homology CDS 2071151 2071909 . - 0 ID=cds1977;Parent=gene2041;Dbxref=Genbank:WP_000559286.1;Name=WP_000559286.1;gbkey=CDS;product=oxoacyl-ACP reductase;protein_id=WP_000559286.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2071953 2072117 . - . ID=gene2042;Name=SH04_RS10230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10230;old_locus_tag=SH04_10225 NZ_CP010443.1 Protein Homology CDS 2071953 2072117 . - 0 ID=cds1978;Parent=gene2042;Dbxref=Genbank:WP_001303289.1;Name=WP_001303289.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303289.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2072129 2073178 . + . ID=gene2043;Name=SH04_RS10235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10235;old_locus_tag=SH04_10230 NZ_CP010443.1 Protein Homology CDS 2072129 2073178 . + 0 ID=cds1979;Parent=gene2043;Dbxref=Genbank:WP_000422045.1;Name=WP_000422045.1;Note=multicopy suppressor of htrA(degP);gbkey=CDS;product=protease;protein_id=WP_000422045.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2073214 2073465 . - . ID=gene2044;Name=SH04_RS10240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10240;old_locus_tag=SH04_10235 NZ_CP010443.1 Protein Homology CDS 2073214 2073465 . - 0 ID=cds1980;Parent=gene2044;Dbxref=Genbank:WP_001031530.1;Name=WP_001031530.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001031530.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2073570 2073722 . + . ID=gene2045;Name=SH04_RS10245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10245;old_locus_tag=SH04_10240 NZ_CP010443.1 Protein Homology CDS 2073570 2073722 . + 0 ID=cds1981;Parent=gene2045;Dbxref=Genbank:WP_014640285.1;Name=WP_014640285.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014640285.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2073845 2076442 . + . ID=gene2046;Name=SH04_RS10250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10250;old_locus_tag=SH04_10245 NZ_CP010443.1 Protein Homology CDS 2073845 2076442 . + 0 ID=cds1982;Parent=gene2046;Dbxref=Genbank:WP_001297122.1;Name=WP_001297122.1;Note=catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining%2C maintains net negative superhelicity;gbkey=CDS;product=DNA topoisomerase 1;protein_id=WP_001297122.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2076652 2077626 . + . ID=gene2047;Name=cysB;gbkey=Gene;gene=cysB;gene_biotype=protein_coding;locus_tag=SH04_RS10255;old_locus_tag=SH04_10250 NZ_CP010443.1 Protein Homology CDS 2076652 2077626 . + 0 ID=cds1983;Parent=gene2047;Dbxref=Genbank:WP_000776253.1;Name=WP_000776253.1;Note=LysR-type transcriptional regulator%3B contains helix-turn-helix (HTH) motif%3B in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon%3B autoregulates expression%3B crystal structure of Klebsiella aerogenes showed tetramer formation;gbkey=CDS;gene=cysB;product=transcriptional regulator;protein_id=WP_000776253.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2077957 2078085 . + . ID=gene2048;Name=SH04_RS10260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10260;old_locus_tag=SH04_10255 NZ_CP010443.1 Protein Homology CDS 2077957 2078085 . + 0 ID=cds1984;Parent=gene2048;Dbxref=Genbank:WP_001295577.1;Name=WP_001295577.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295577.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2078088 2078255 . + . ID=gene2049;Name=SH04_RS10265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10265;old_locus_tag=SH04_10260 NZ_CP010443.1 Protein Homology CDS 2078088 2078255 . + 0 ID=cds1985;Parent=gene2049;Dbxref=Genbank:WP_001297116.1;Name=WP_001297116.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001297116.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2078329 2078454 . - . ID=gene2050;Name=SH04_RS10270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10270;old_locus_tag=SH04_10265 NZ_CP010443.1 Protein Homology CDS 2078329 2078454 . - 0 ID=cds1986;Parent=gene2050;Dbxref=Genbank:WP_000616081.1;Name=WP_000616081.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000616081.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2078628 2081303 . + . ID=gene2051;Name=SH04_RS10275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10275;old_locus_tag=SH04_10275 NZ_CP010443.1 Protein Homology CDS 2078628 2081303 . + 0 ID=cds1987;Parent=gene2051;Dbxref=Genbank:WP_000099534.1;Name=WP_000099534.1;Note=Catalyzes the conversion of citrate to isocitrate;gbkey=CDS;product=aconitate hydratase;protein_id=WP_000099534.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2081367 2081957 . - . ID=gene2052;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=SH04_RS10280;old_locus_tag=SH04_10280 NZ_CP010443.1 Protein Homology CDS 2081367 2081957 . - 0 ID=cds1988;Parent=gene2052;Dbxref=Genbank:WP_001176295.1;Name=WP_001176295.1;Note=catalyzes the conversion of GTP to formate and 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate;gbkey=CDS;gene=ribA;product=GTP cyclohydrolase-2;protein_id=WP_001176295.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2082127 2082891 . + . ID=gene2053;Name=SH04_RS10285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10285;old_locus_tag=SH04_10285 NZ_CP010443.1 Protein Homology CDS 2082127 2082891 . + 0 ID=cds1989;Parent=gene2053;Dbxref=Genbank:WP_001256538.1;Name=WP_001256538.1;gbkey=CDS;product=phosphatidylglycerophosphatase B;protein_id=WP_001256538.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2083040 2083348 . + . ID=gene2054;Name=SH04_RS10290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10290;old_locus_tag=SH04_10290 NZ_CP010443.1 Protein Homology CDS 2083040 2083348 . + 0 ID=cds1990;Parent=gene2054;Dbxref=Genbank:WP_000876286.1;Name=WP_000876286.1;gbkey=CDS;product=LPS assembly protein A;protein_id=WP_000876286.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2083355 2084524 . + . ID=gene2055;Name=SH04_RS10295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10295;old_locus_tag=SH04_10295 NZ_CP010443.1 Protein Homology CDS 2083355 2084524 . + 0 ID=cds1991;Parent=gene2055;Dbxref=Genbank:WP_000891353.1;Name=WP_000891353.1;gbkey=CDS;product=LPS assembly protein B;protein_id=WP_000891353.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2084718 2085455 . + . ID=gene2056;Name=SH04_RS10300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10300;old_locus_tag=SH04_10300 NZ_CP010443.1 Protein Homology CDS 2084718 2085455 . + 0 ID=cds1992;Parent=gene2056;Dbxref=Genbank:WP_000176270.1;Name=WP_000176270.1;gbkey=CDS;product=orotidine 5'-phosphate decarboxylase;protein_id=WP_000176270.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2085455 2085781 . + . ID=gene2057;Name=SH04_RS10305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10305;old_locus_tag=SH04_10305 NZ_CP010443.1 Protein Homology CDS 2085455 2085781 . + 0 ID=cds1993;Parent=gene2057;Dbxref=Genbank:WP_001295580.1;Name=WP_001295580.1;Note=involved in start site selection during the initiation of translation;gbkey=CDS;product=initiation factor function;protein_id=WP_001295580.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2085907 2086125 . - . ID=gene2058;Name=SH04_RS10310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10310;old_locus_tag=SH04_10310 NZ_CP010443.1 Protein Homology CDS 2085907 2086125 . - 0 ID=cds1994;Parent=gene2058;Dbxref=Genbank:WP_000498253.1;Name=WP_000498253.1;gbkey=CDS;product=osmotically-inducible lipoprotein B;protein_id=WP_000498253.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2086394 2087143 . - . ID=gene2059;Name=SH04_RS10315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10315;old_locus_tag=SH04_10315 NZ_CP010443.1 Protein Homology CDS 2086394 2087143 . - 0 ID=cds1995;Parent=gene2059;Dbxref=Genbank:WP_001088620.1;Name=WP_001088620.1;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_001088620.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2087233 2087406 . - . ID=gene2060;Name=SH04_RS10320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10320;old_locus_tag=SH04_10320 NZ_CP010443.1 Protein Homology CDS 2087233 2087406 . - 0 ID=cds1996;Parent=gene2060;Dbxref=Genbank:WP_001288368.1;Name=WP_001288368.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001288368.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2087554 2089539 . - . ID=gene2061;Name=SH04_RS10325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10325;old_locus_tag=SH04_10325 NZ_CP010443.1 Protein Homology CDS 2087554 2089539 . - 0 ID=cds1997;Parent=gene2061;Dbxref=Genbank:WP_000859945.1;Name=WP_000859945.1;Note=c-di-GMP phosphodiesterase%3B probably degrades signalling molecule c-di-GMP;gbkey=CDS;product=cyclic di-GMP phosphodiesterase Gmr;protein_id=WP_000859945.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2089593 2089697 . + . ID=gene2062;Name=SH04_RS10330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10330;old_locus_tag=SH04_10330 NZ_CP010443.1 Protein Homology CDS 2089593 2089697 . + 0 ID=cds1998;Parent=gene2062;Dbxref=Genbank:WP_000221855.1;Name=WP_000221855.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000221855.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2089775 2091709 . - . ID=gene2063;Name=SH04_RS10335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10335;old_locus_tag=SH04_10335 NZ_CP010443.1 Protein Homology CDS 2089775 2091709 . - 0 ID=cds1999;Parent=gene2063;Dbxref=Genbank:WP_000484984.1;Name=WP_000484984.1;Note=Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction;gbkey=CDS;product=exoribonuclease 2;protein_id=WP_000484984.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2091777 2092904 . - . ID=gene2064;Name=SH04_RS10340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10340;old_locus_tag=SH04_10340 NZ_CP010443.1 Protein Homology CDS 2091777 2092904 . - 0 ID=cds2000;Parent=gene2064;Dbxref=Genbank:WP_001335988.1;Name=WP_001335988.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_001335988.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2093048 2093836 . - . ID=gene2065;Name=SH04_RS10345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10345;old_locus_tag=SH04_10345 NZ_CP010443.1 Protein Homology CDS 2093048 2093836 . - 0 ID=cds2001;Parent=gene2065;Dbxref=Genbank:WP_000506490.1;Name=WP_000506490.1;Note=Catalyzes a key regulatory step in fatty acid biosynthesis;gbkey=CDS;product=enoyl-ACP reductase [NADH];protein_id=WP_000506490.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2094204 2094554 . - . ID=gene2066;Name=SH04_RS10350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10350;old_locus_tag=SH04_10355 NZ_CP010443.1 Protein Homology CDS 2094204 2094554 . - 0 ID=cds2002;Parent=gene2066;Dbxref=Genbank:WP_024168544.1;Name=WP_024168544.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024168544.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2094625 2095431 . - . ID=gene2067;Name=SH04_RS10355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10355;old_locus_tag=SH04_10360 NZ_CP010443.1 Protein Homology CDS 2094625 2095431 . - 0 ID=cds2003;Parent=gene2067;Dbxref=Genbank:WP_000573407.1;Name=WP_000573407.1;gbkey=CDS;product=peptide transport system ATP-binding protein SapF;protein_id=WP_000573407.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2095433 2096425 . - . ID=gene2068;Name=SH04_RS10360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10360;old_locus_tag=SH04_10365 NZ_CP010443.1 Protein Homology CDS 2095433 2096425 . - 0 ID=cds2004;Parent=gene2068;Dbxref=Genbank:WP_001128858.1;Name=WP_001128858.1;Note=involved in resistance to antimibial peptides;gbkey=CDS;product=peptide transport system ATP-binding protein SapD;protein_id=WP_001128858.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2096425 2097315 . - . ID=gene2069;Name=SH04_RS10365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10365;old_locus_tag=SH04_10370 NZ_CP010443.1 Protein Homology CDS 2096425 2097315 . - 0 ID=cds2005;Parent=gene2069;Dbxref=Genbank:WP_001146163.1;Name=WP_001146163.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_001146163.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2097302 2098267 . - . ID=gene2070;Name=SH04_RS10370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10370;old_locus_tag=SH04_10375 NZ_CP010443.1 Protein Homology CDS 2097302 2098267 . - 0 ID=cds2006;Parent=gene2070;Dbxref=Genbank:WP_000583277.1;Name=WP_000583277.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_000583277.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2098264 2099907 . - . ID=gene2071;Name=SH04_RS10375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10375;old_locus_tag=SH04_10380 NZ_CP010443.1 Protein Homology CDS 2098264 2099907 . - 0 ID=cds2007;Parent=gene2071;Dbxref=Genbank:WP_001250216.1;Name=WP_001250216.1;gbkey=CDS;product=peptide transport periplasmic protein SapA;protein_id=WP_001250216.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2099950 2100150 . - . ID=gene2072;Name=SH04_RS10380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10380;old_locus_tag=SH04_10385 NZ_CP010443.1 Protein Homology CDS 2099950 2100150 . - 0 ID=cds2008;Parent=gene2072;Dbxref=Genbank:WP_032339682.1;Name=WP_032339682.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032339682.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2100220 2100465 . - . ID=gene2073;Name=SH04_RS10385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10385;old_locus_tag=SH04_10390 NZ_CP010443.1 Protein Homology CDS 2100220 2100465 . - 0 ID=cds2009;Parent=gene2073;Dbxref=Genbank:WP_001015110.1;Name=WP_001015110.1;gbkey=CDS;product=DUF2543 domain-containing protein;protein_id=WP_001015110.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2100599 2101984 . - . ID=gene2074;Name=SH04_RS10390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10390;old_locus_tag=SH04_10395 NZ_CP010443.1 Protein Homology CDS 2100599 2101984 . - 0 ID=cds2010;Parent=gene2074;Dbxref=Genbank:WP_001395398.1;Name=WP_001395398.1;gbkey=CDS;product=putrescine importer;protein_id=WP_001395398.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2102287 2103705 . - . ID=gene2075;Name=SH04_RS10395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10395;old_locus_tag=SH04_10400 NZ_CP010443.1 Protein Homology CDS 2102287 2103705 . - 0 ID=cds2011;Parent=gene2075;Dbxref=Genbank:WP_001296746.1;Name=WP_001296746.1;gbkey=CDS;product=gamma-glutamylputrescine synthetase PuuA;protein_id=WP_001296746.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2103917 2104681 . + . ID=gene2076;Name=puuD;gbkey=Gene;gene=puuD;gene_biotype=protein_coding;locus_tag=SH04_RS10400;old_locus_tag=SH04_10405 NZ_CP010443.1 Protein Homology CDS 2103917 2104681 . + 0 ID=cds2012;Parent=gene2076;Dbxref=Genbank:WP_001300506.1;Name=WP_001300506.1;Note=catalyzes the degradation of gamma-glutamyl-gamma-aminobutyrate into glutamate and gamma-aminobutyrate;gbkey=CDS;gene=puuD;product=gamma-glutamyl-gamma-aminobutyrate hydrolase;protein_id=WP_001300506.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2104708 2105265 . + . ID=gene2077;Name=SH04_RS10405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10405;old_locus_tag=SH04_10410 NZ_CP010443.1 Protein Homology CDS 2104708 2105265 . + 0 ID=cds2013;Parent=gene2077;Dbxref=Genbank:WP_001278727.1;Name=WP_001278727.1;Note=regulates genes involved in putrescine degradation;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001278727.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2105540 2107027 . + . ID=gene2078;Name=SH04_RS10410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10410;old_locus_tag=SH04_10415 NZ_CP010443.1 Protein Homology CDS 2105540 2107027 . + 0 ID=cds2014;Parent=gene2078;Dbxref=Genbank:WP_001009090.1;Name=WP_001009090.1;gbkey=CDS;product=aldehyde dehydrogenase PuuC;protein_id=WP_001009090.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2107029 2108309 . + . ID=gene2079;Name=SH04_RS10415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10415;old_locus_tag=SH04_10420 NZ_CP010443.1 Protein Homology CDS 2107029 2108309 . + 0 ID=cds2015;Parent=gene2079;Dbxref=Genbank:WP_000134870.1;Name=WP_000134870.1;Note=catalyzes the formation of gamma-glutamyl-gamma-aminobutyraldehyde from gamma-glutamylputrescine;gbkey=CDS;product=gamma-glutamylputrescine oxidoreductase;protein_id=WP_000134870.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2108347 2109612 . + . ID=gene2080;Name=SH04_RS10420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10420;old_locus_tag=SH04_10425 NZ_CP010443.1 Protein Homology CDS 2108347 2109612 . + 0 ID=cds2016;Parent=gene2080;Dbxref=Genbank:WP_000069229.1;Name=WP_000069229.1;Note=catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate;gbkey=CDS;product=4-aminobutyrate aminotransferase PuuE;protein_id=WP_000069229.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2109732 2110709 . - . ID=gene2081;Name=pspF;gbkey=Gene;gene=pspF;gene_biotype=protein_coding;locus_tag=SH04_RS10425;old_locus_tag=SH04_10430 NZ_CP010443.1 Protein Homology CDS 2109732 2110709 . - 0 ID=cds2017;Parent=gene2081;Dbxref=Genbank:WP_001301108.1;Name=WP_001301108.1;Note=transcriptional activator for pspABCE which are induced in response to phage proteins%2C membrane altering stresses%2C and impaired proton expor;gbkey=CDS;gene=pspF;product=psp operon transcriptional activator;protein_id=WP_001301108.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2110876 2111544 . + . ID=gene2082;Name=SH04_RS10430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10430;old_locus_tag=SH04_10435 NZ_CP010443.1 Protein Homology CDS 2110876 2111544 . + 0 ID=cds2018;Parent=gene2082;Dbxref=Genbank:WP_000511025.1;Name=WP_000511025.1;Note=involved in maintaining membrane potential under membrane stress conditions%3B also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF;gbkey=CDS;product=phage shock protein A;protein_id=WP_000511025.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2111598 2111822 . + . ID=gene2083;Name=pspB;gbkey=Gene;gene=pspB;gene_biotype=protein_coding;locus_tag=SH04_RS10435;old_locus_tag=SH04_10440 NZ_CP010443.1 Protein Homology CDS 2111598 2111822 . + 0 ID=cds2019;Parent=gene2083;Dbxref=Genbank:WP_046377549.1;Name=WP_046377549.1;Note=DNA-binding transcriptional regulator%3B acts together with PspC to induce psp operon during infection with phage%2C exposure to ethanol or osmotic shock%3B forms a complex with PspA and C%3B PspC is required for PspAB binding;gbkey=CDS;gene=pspB;product=phage shock protein;protein_id=WP_046377549.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2111822 2112181 . + . ID=gene2084;Name=SH04_RS10440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10440;old_locus_tag=SH04_10445 NZ_CP010443.1 Protein Homology CDS 2111822 2112181 . + 0 ID=cds2020;Parent=gene2084;Dbxref=Genbank:WP_000907387.1;Name=WP_000907387.1;Note=with PsbB forms toxin/antitoxin pair%3B activates the psp operon in response to phage infection%2C exposure to ethanol or osmotic shock;gbkey=CDS;product=phage shock protein C;protein_id=WP_000907387.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2112190 2112411 . + . ID=gene2085;Name=SH04_RS10445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10445;old_locus_tag=SH04_10450 NZ_CP010443.1 Protein Homology CDS 2112190 2112411 . + 0 ID=cds2021;Parent=gene2085;Dbxref=Genbank:WP_001295585.1;Name=WP_001295585.1;gbkey=CDS;product=phage shock protein D;protein_id=WP_001295585.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2112486 2112800 . + . ID=gene2086;Name=SH04_RS10450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10450;old_locus_tag=SH04_10455 NZ_CP010443.1 Protein Homology CDS 2112486 2112800 . + 0 ID=cds2022;Parent=gene2086;Dbxref=Genbank:WP_000473109.1;Name=WP_000473109.1;Note=rhodanese%3B catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide;gbkey=CDS;product=thiosulfate sulfurtransferase PspE;protein_id=WP_000473109.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2113013 2114692 . + . ID=gene2087;Name=SH04_RS10455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10455;old_locus_tag=SH04_10460 NZ_CP010443.1 Protein Homology CDS 2113013 2114692 . + 0 ID=cds2023;Parent=gene2087;Dbxref=Genbank:WP_000810499.1;Name=WP_000810499.1;gbkey=CDS;product=alpha amylase catalytic domain family protein;protein_id=WP_000810499.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2114706 2115998 . + . ID=gene2088;Name=SH04_RS10460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10460;old_locus_tag=SH04_10465 NZ_CP010443.1 Protein Homology CDS 2114706 2115998 . + 0 ID=cds2024;Parent=gene2088;Dbxref=Genbank:WP_000597466.1;Name=WP_000597466.1;gbkey=CDS;product=sugar ABC transporter substrate-binding protein;protein_id=WP_000597466.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2116019 2116900 . + . ID=gene2089;Name=SH04_RS10465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10465;old_locus_tag=SH04_10470 NZ_CP010443.1 Protein Homology CDS 2116019 2116900 . + 0 ID=cds2025;Parent=gene2089;Dbxref=Genbank:WP_001080790.1;Name=WP_001080790.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_001080790.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2116887 2117729 . + . ID=gene2090;Name=SH04_RS10470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10470;old_locus_tag=SH04_10475 NZ_CP010443.1 Protein Homology CDS 2116887 2117729 . + 0 ID=cds2026;Parent=gene2090;Dbxref=Genbank:WP_000224659.1;Name=WP_000224659.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_000224659.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2117760 2118812 . + . ID=gene2091;Name=SH04_RS10475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10475;old_locus_tag=SH04_10480 NZ_CP010443.1 Protein Homology CDS 2117760 2118812 . + 0 ID=cds2027;Parent=gene2091;Dbxref=Genbank:WP_000737347.1;Name=WP_000737347.1;gbkey=CDS;product=Zn-dependent NAD(P)-binding oxidoreductase;protein_id=WP_000737347.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2118831 2119619 . + . ID=gene2092;Name=SH04_RS10480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10480;old_locus_tag=SH04_10485 NZ_CP010443.1 Protein Homology CDS 2118831 2119619 . + 0 ID=cds2028;Parent=gene2092;Dbxref=Genbank:WP_000690229.1;Name=WP_000690229.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000690229.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2119629 2120684 . + . ID=gene2093;Name=SH04_RS10485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10485;old_locus_tag=SH04_10490 NZ_CP010443.1 Protein Homology CDS 2119629 2120684 . + 0 ID=cds2029;Parent=gene2093;Dbxref=Genbank:WP_001395397.1;Name=WP_001395397.1;gbkey=CDS;product=NADH-binding oxidoreductase;protein_id=WP_001395397.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2120681 2122948 . + . ID=gene2094;Name=SH04_RS10490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10490;old_locus_tag=SH04_10495 NZ_CP010443.1 Protein Homology CDS 2120681 2122948 . + 0 ID=cds2030;Parent=gene2094;Dbxref=Genbank:WP_000198036.1;Name=WP_000198036.1;gbkey=CDS;product=family 65 glycosyl hydrolase;protein_id=WP_000198036.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2122945 2123604 . + . ID=gene2095;Name=SH04_RS10495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10495;old_locus_tag=SH04_10500 NZ_CP010443.1 Protein Homology CDS 2122945 2123604 . + 0 ID=cds2031;Parent=gene2095;Dbxref=Genbank:WP_000775794.1;Name=WP_000775794.1;Note=catalyzes the interconversion of beta-D-glucose 6-phosphate to beta-D-glucose 1-phosphate;gbkey=CDS;product=beta-phosphoglucomutase;protein_id=WP_000775794.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2123618 2124699 . + . ID=gene2096;Name=SH04_RS10500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS10500;pseudo=true NZ_CP010443.1 Protein Homology CDS 2123618 2124699 . + 0 ID=cds2032;Parent=gene2096;exception=annotated by transcript or proteomic data;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 2124744 2125649 . + . ID=gene2097;Name=SH04_RS10505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10505;old_locus_tag=SH04_10510 NZ_CP010443.1 Protein Homology CDS 2124744 2125649 . + 0 ID=cds2033;Parent=gene2097;Dbxref=Genbank:WP_000735257.1;Name=WP_000735257.1;gbkey=CDS;product=outer membrane protein G;protein_id=WP_000735257.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2125760 2126758 . - . ID=gene2098;Name=SH04_RS10510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10510;old_locus_tag=SH04_10515 NZ_CP010443.1 Protein Homology CDS 2125760 2126758 . - 0 ID=cds2034;Parent=gene2098;Dbxref=Genbank:WP_000075375.1;Name=WP_000075375.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_000075375.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2126914 2128311 . + . ID=gene2099;Name=SH04_RS10515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10515;old_locus_tag=SH04_10520 NZ_CP010443.1 Protein Homology CDS 2126914 2128311 . + 0 ID=cds2035;Parent=gene2099;Dbxref=Genbank:WP_000825775.1;Name=WP_000825775.1;gbkey=CDS;product=DUF463 domain-containing protein;protein_id=WP_000825775.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2128308 2129369 . + . ID=gene2100;Name=SH04_RS10520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10520;old_locus_tag=SH04_10525 NZ_CP010443.1 Protein Homology CDS 2128308 2129369 . + 0 ID=cds2036;Parent=gene2100;Dbxref=Genbank:WP_000138728.1;Name=WP_000138728.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000138728.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2129517 2131058 . + . ID=gene2101;Name=SH04_RS10525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10525;old_locus_tag=SH04_10530 NZ_CP010443.1 Protein Homology CDS 2129517 2131058 . + 0 ID=cds2037;Parent=gene2101;Dbxref=Genbank:WP_001300658.1;Name=WP_001300658.1;Note=regulates genes involved in the biosynthesis and transport of aromatic amino acids;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001300658.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2131102 2131608 . - . ID=gene2102;Name=tpx;gbkey=Gene;gene=tpx;gene_biotype=protein_coding;locus_tag=SH04_RS10530;old_locus_tag=SH04_10535 NZ_CP010443.1 Protein Homology CDS 2131102 2131608 . - 0 ID=cds2038;Parent=gene2102;Dbxref=Genbank:WP_000084387.1;Name=WP_000084387.1;Note=antioxidant activity%3B thioredoxin-dependent thiol peroxidase%3B forms homodimers in solution%3B shows substrate specificity to alkyl hydroperoxides%3B periplasmic protein;gbkey=CDS;gene=tpx;product=thiol peroxidase;protein_id=WP_000084387.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2131727 2132692 . + . ID=gene2103;Name=SH04_RS10535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10535;old_locus_tag=SH04_10540 NZ_CP010443.1 Protein Homology CDS 2131727 2132692 . + 0 ID=cds2039;Parent=gene2103;Dbxref=Genbank:WP_001261211.1;Name=WP_001261211.1;Note=catalyzes the epimerization of L-alanyl-D-glutamate to L-alanyl-L-glutamate;gbkey=CDS;product=L-Ala-D/L-Glu epimerase;protein_id=WP_001261211.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2132667 2133395 . - . ID=gene2104;Name=SH04_RS10540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10540;old_locus_tag=SH04_10545 NZ_CP010443.1 Protein Homology CDS 2132667 2133395 . - 0 ID=cds2040;Parent=gene2104;Dbxref=Genbank:WP_000219122.1;Name=WP_000219122.1;gbkey=CDS;product=protein MpaA;protein_id=WP_000219122.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2133477 2133659 . - . ID=gene2105;Name=SH04_RS10545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10545;old_locus_tag=SH04_10550 NZ_CP010443.1 Protein Homology CDS 2133477 2133659 . - 0 ID=cds2041;Parent=gene2105;Dbxref=Genbank:WP_000800171.1;Name=WP_000800171.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000800171.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2133730 2134650 . - . ID=gene2106;Name=SH04_RS10550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10550;old_locus_tag=SH04_10555 NZ_CP010443.1 Protein Homology CDS 2133730 2134650 . - 0 ID=cds2042;Parent=gene2106;Dbxref=Genbank:WP_001300523.1;Name=WP_001300523.1;gbkey=CDS;product=S9 homolog non-peptidase;protein_id=WP_001300523.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2134788 2135687 . + . ID=gene2107;Name=SH04_RS10555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10555;old_locus_tag=SH04_10560 NZ_CP010443.1 Protein Homology CDS 2134788 2135687 . + 0 ID=cds2043;Parent=gene2107;Dbxref=Genbank:WP_000817708.1;Name=WP_000817708.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000817708.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2135776 2135901 . + . ID=gene2108;Name=SH04_RS10560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10560;old_locus_tag=SH04_10565 NZ_CP010443.1 Protein Homology CDS 2135776 2135901 . + 0 ID=cds2044;Parent=gene2108;Dbxref=Genbank:WP_001308630.1;Name=WP_001308630.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001308630.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2136024 2137637 . + . ID=gene2109;Name=SH04_RS10565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10565;old_locus_tag=SH04_10570 NZ_CP010443.1 Protein Homology CDS 2136024 2137637 . + 0 ID=cds2045;Parent=gene2109;Dbxref=Genbank:WP_000683020.1;Name=WP_000683020.1;Note=is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate;gbkey=CDS;product=periplasmic murein peptide-binding protein;protein_id=WP_000683020.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2137688 2138719 . - . ID=gene2110;Name=SH04_RS10570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10570;old_locus_tag=SH04_10575 NZ_CP010443.1 Protein Homology CDS 2137688 2138719 . - 0 ID=cds2046;Parent=gene2110;Dbxref=Genbank:WP_000559900.1;Name=WP_000559900.1;gbkey=CDS;product=low conductance mechanosensitive channel YnaI;protein_id=WP_000559900.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2138837 2140040 . + . ID=id130;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2138909 2139889 . + . ID=gene2111;Name=SH04_RS10575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10575;old_locus_tag=SH04_10580 NZ_CP010443.1 Protein Homology CDS 2138909 2139889 . + 0 ID=cds2047;Parent=gene2111;Dbxref=Genbank:WP_000019403.1;Name=WP_000019403.1;gbkey=CDS;product=transposase;protein_id=WP_000019403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2140162 2140419 . + . ID=gene2112;Name=SH04_RS10580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10580;old_locus_tag=SH04_10585 NZ_CP010443.1 Protein Homology CDS 2140162 2140419 . + 0 ID=cds2048;Parent=gene2112;Dbxref=Genbank:WP_000605090.1;Name=WP_000605090.1;gbkey=CDS;product=DUF2534 domain-containing protein;protein_id=WP_000605090.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2140469 2141419 . - . ID=gene2113;Name=SH04_RS10585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10585;old_locus_tag=SH04_10590 NZ_CP010443.1 Protein Homology CDS 2140469 2141419 . - 0 ID=cds2049;Parent=gene2113;Dbxref=Genbank:WP_001262123.1;Name=WP_001262123.1;Note=with UspC and UspD is involved in resistance to UV irradiation;gbkey=CDS;product=universal stress protein E;protein_id=WP_001262123.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2141571 2142323 . - . ID=gene2114;Name=SH04_RS10590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10590;old_locus_tag=SH04_10595 NZ_CP010443.1 Protein Homology CDS 2141571 2142323 . - 0 ID=cds2050;Parent=gene2114;Dbxref=Genbank:WP_000611911.1;Name=WP_000611911.1;Note=Global transcription factor that controls the expression of over 100 target genes in response to anoxia;gbkey=CDS;product=fumarate and nitrate reduction regulatory protein;protein_id=WP_000611911.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2142518 2143033 . - . ID=gene2115;Name=SH04_RS10595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10595;old_locus_tag=SH04_10600 NZ_CP010443.1 Protein Homology CDS 2142518 2143033 . - 0 ID=cds2051;Parent=gene2115;Dbxref=Genbank:WP_000945011.1;Name=WP_000945011.1;gbkey=CDS;product=methylated-DNA--protein-cysteine methyltransferase;protein_id=WP_000945011.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2143044 2144570 . - . ID=gene2116;Name=SH04_RS10600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10600;old_locus_tag=SH04_10605 NZ_CP010443.1 Protein Homology CDS 2143044 2144570 . - 0 ID=cds2052;Parent=gene2116;Dbxref=Genbank:WP_000062973.1;Name=WP_000062973.1;gbkey=CDS;product=p-aminobenzoyl-glutamate transporter;protein_id=WP_000062973.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2144500 2144694 . - . ID=gene2117;Name=SH04_RS10605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10605;old_locus_tag=SH04_10610 NZ_CP010443.1 Protein Homology CDS 2144500 2144694 . - 0 ID=cds2053;Parent=gene2117;Dbxref=Genbank:WP_032082751.1;Name=WP_032082751.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032082751.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2144607 2146052 . - . ID=gene2118;Name=SH04_RS10610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10610;old_locus_tag=SH04_10615 NZ_CP010443.1 Protein Homology CDS 2144607 2146052 . - 0 ID=cds2054;Parent=gene2118;Dbxref=Genbank:WP_001156451.1;Name=WP_001156451.1;gbkey=CDS;product=p-aminobenzoyl-glutamate hydrolase subunit B;protein_id=WP_001156451.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2146052 2147362 . - . ID=gene2119;Name=SH04_RS10615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10615;old_locus_tag=SH04_10620 NZ_CP010443.1 Protein Homology CDS 2146052 2147362 . - 0 ID=cds2055;Parent=gene2119;Dbxref=Genbank:WP_000444929.1;Name=WP_000444929.1;gbkey=CDS;product=p-aminobenzoyl-glutamate hydrolase subunit A;protein_id=WP_000444929.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2147538 2148446 . + . ID=gene2120;Name=SH04_RS10620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10620;old_locus_tag=SH04_10625 NZ_CP010443.1 Protein Homology CDS 2147538 2148446 . + 0 ID=cds2056;Parent=gene2120;Dbxref=Genbank:WP_000885458.1;Name=WP_000885458.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000885458.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2148518 2148628 . - . ID=gene2121;Name=SH04_RS10625;end_range=2148628,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS10625;partial=true;pseudo=true NZ_CP010443.1 Protein Homology CDS 2148518 2148628 . - 0 ID=cds2057;Parent=gene2121;end_range=2148628,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=glutamate decarboxylase;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 2148776 2149339 . + . ID=gene2122;Name=SH04_RS10630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10630;old_locus_tag=SH04_10635 NZ_CP010443.1 Protein Homology CDS 2148776 2149339 . + 0 ID=cds2058;Parent=gene2122;Dbxref=Genbank:WP_001046829.1;Name=WP_001046829.1;gbkey=CDS;product=DNA endonuclease SmrA;protein_id=WP_001046829.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2149360 2150592 . - . ID=gene2123;Name=SH04_RS10635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10635;old_locus_tag=SH04_10640 NZ_CP010443.1 Protein Homology CDS 2149360 2150592 . - 0 ID=cds2059;Parent=gene2123;Dbxref=Genbank:WP_000628058.1;Name=WP_000628058.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_000628058.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2150847 2151830 . + . ID=gene2124;Name=zntB;gbkey=Gene;gene=zntB;gene_biotype=protein_coding;locus_tag=SH04_RS10640;old_locus_tag=SH04_10645 NZ_CP010443.1 Protein Homology CDS 2150847 2151830 . + 0 ID=cds2060;Parent=gene2124;Dbxref=Genbank:WP_000387388.1;Name=WP_000387388.1;gbkey=CDS;gene=zntB;product=zinc transporter ZntB;protein_id=WP_000387388.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2152105 2152278 . + . ID=gene2125;Name=SH04_RS10645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10645;old_locus_tag=SH04_10650 NZ_CP010443.1 Protein Homology CDS 2152105 2152278 . + 0 ID=cds2061;Parent=gene2125;Dbxref=Genbank:WP_001296046.1;Name=WP_001296046.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296046.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2152308 2153681 . + . ID=gene2126;Name=SH04_RS10650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10650;old_locus_tag=SH04_10655 NZ_CP010443.1 Protein Homology CDS 2152308 2153681 . + 0 ID=cds2062;Parent=gene2126;Dbxref=Genbank:WP_000123737.1;Name=WP_000123737.1;Note=exhibits an RNA-dependent ATPase activity%2C specifically stimulated by bacterial 23S rRNA;gbkey=CDS;product=ATP-dependent RNA helicase DbpA;protein_id=WP_000123737.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2153810 2154745 . - . ID=gene2127;Name=SH04_RS10655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10655;old_locus_tag=SH04_10660 NZ_CP010443.1 Protein Homology CDS 2153810 2154745 . - 0 ID=cds2063;Parent=gene2127;Dbxref=Genbank:WP_001157406.1;Name=WP_001157406.1;Note=TtcA%3B YdaO%3B catalyzes the thiolation of cytosine 32 in specific tRNAs%3B forms 2-thiocytidine (s(2)C);gbkey=CDS;product=tRNA 2-thiocytidine biosynthesis protein TtcA;protein_id=WP_001157406.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2154797 2154937 . - . ID=gene2128;Name=SH04_RS10660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10660;old_locus_tag=SH04_10665 NZ_CP010443.1 Protein Homology CDS 2154797 2154937 . - 0 ID=cds2064;Parent=gene2128;Dbxref=Genbank:WP_005023097.1;Name=WP_005023097.1;gbkey=CDS;product=integrase;protein_id=WP_005023097.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2156034 2156249 . - . ID=gene2129;Name=SH04_RS10665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10665;old_locus_tag=SH04_10670 NZ_CP010443.1 Protein Homology CDS 2156034 2156249 . - 0 ID=cds2065;Parent=gene2129;Dbxref=Genbank:WP_000079604.1;Name=WP_000079604.1;gbkey=CDS;product=Rac prophage%3B conserved protein;protein_id=WP_000079604.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2156328 2156537 . - . ID=gene2130;Name=SH04_RS10670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10670;old_locus_tag=SH04_10675 NZ_CP010443.1 Protein Homology CDS 2156328 2156537 . - 0 ID=cds2066;Parent=gene2130;Dbxref=Genbank:WP_000276809.1;Name=WP_000276809.1;Note=Rac prophage;gbkey=CDS;product=double-strand break reduction protein;protein_id=WP_000276809.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2156530 2156724 . - . ID=gene2131;Name=lar;gbkey=Gene;gene=lar;gene_biotype=protein_coding;locus_tag=SH04_RS10675;old_locus_tag=SH04_10680 NZ_CP010443.1 Protein Homology CDS 2156530 2156724 . - 0 ID=cds2067;Parent=gene2131;Dbxref=Genbank:WP_001317028.1;Name=WP_001317028.1;Note=seems to be involved in restriction alleviation and enhancement of modification by EcoKI%2C but not in restriction alleviation of type III restriction systems%3B Rac prophage;gbkey=CDS;gene=lar;product=restriction alleviation and modification enhancement protein;protein_id=WP_001317028.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2156781 2157590 . - . ID=gene2132;Name=recT;gbkey=Gene;gene=recT;gene_biotype=protein_coding;locus_tag=SH04_RS10680;old_locus_tag=SH04_10685 NZ_CP010443.1 Protein Homology CDS 2156781 2157590 . - 0 ID=cds2068;Parent=gene2132;Dbxref=Genbank:WP_000166319.1;Name=WP_000166319.1;gbkey=CDS;gene=recT;product=DNA recombination protein RecT;protein_id=WP_000166319.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2157583 2160183 . - . ID=gene2133;Name=SH04_RS10685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10685;old_locus_tag=SH04_10690 NZ_CP010443.1 Protein Homology CDS 2157583 2160183 . - 0 ID=cds2069;Parent=gene2133;Dbxref=Genbank:WP_000105143.1;Name=WP_000105143.1;Note=The RecE (also known as exonuclease VIII) pathway is an alternative pathway for the initiation of homologous recombination in Escherichia coli. The RecE pathway is activated in recB%2C recC sbcA (suppressors of recB and recC) mutants. Activation of the RecE pathway results in the production of at least two phage proteins relevant for recombinational repair. RecE is a duplex DNA-specific exonuclease which produces 3' overhangs in duplex DNA by preferentially degrading the 5'-ending strands. Recombinational repair of E.coli chromosomal DNA involves as well other proteins: RecA%2C RecF%2C RecJ%2C RecO%2C RecR%2C and RuvC.;gbkey=CDS;product=exodeoxyribonuclease 8;protein_id=WP_000105143.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2160285 2160560 . - . ID=gene2134;Name=SH04_RS10690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10690;old_locus_tag=SH04_10695 NZ_CP010443.1 Protein Homology CDS 2160285 2160560 . - 0 ID=cds2070;Parent=gene2134;Dbxref=Genbank:WP_000632297.1;Name=WP_000632297.1;Note=Rac prophage hypothetical protein;gbkey=CDS;product=protein RacC;protein_id=WP_000632297.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2160635 2160811 . - . ID=gene2135;Name=SH04_RS10695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10695;old_locus_tag=SH04_10700 NZ_CP010443.1 Protein Homology CDS 2160635 2160811 . - 0 ID=cds2071;Parent=gene2135;Dbxref=Genbank:WP_000245524.1;Name=WP_000245524.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000245524.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2160805 2161026 . - . ID=gene2136;Name=kil;gbkey=Gene;gene=kil;gene_biotype=protein_coding;locus_tag=SH04_RS10700;old_locus_tag=SH04_10705 NZ_CP010443.1 Protein Homology CDS 2160805 2161026 . - 0 ID=cds2072;Parent=gene2136;Dbxref=Genbank:WP_000560225.1;Name=WP_000560225.1;Note=Rac prophage Kil protein%3B Kil overexpression leads to morphological defects and inhibits cell division;gbkey=CDS;gene=kil;product=killing protein KilR;protein_id=WP_000560225.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2161468 2161956 . + . ID=gene2137;Name=SH04_RS10705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10705;old_locus_tag=SH04_10710 NZ_CP010443.1 Protein Homology CDS 2161468 2161956 . + 0 ID=cds2073;Parent=gene2137;Dbxref=Genbank:WP_001312793.1;Name=WP_001312793.1;gbkey=CDS;product=superinfection exclusion protein B;protein_id=WP_001312793.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2161953 2162108 . - . ID=gene2138;Name=SH04_RS22865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22865 NZ_CP010443.1 Protein Homology CDS 2161953 2162108 . - 0 ID=cds2074;Parent=gene2138;Dbxref=Genbank:WP_001169151.1;Name=WP_001169151.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001169151.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2162562 2163038 . - . ID=gene2139;Name=SH04_RS10710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10710;old_locus_tag=SH04_10715 NZ_CP010443.1 Protein Homology CDS 2162562 2163038 . - 0 ID=cds2075;Parent=gene2139;Dbxref=Genbank:WP_000948459.1;Name=WP_000948459.1;gbkey=CDS;product=Rac prophage repressor;protein_id=WP_000948459.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2163162 2163458 . + . ID=gene2140;Name=SH04_RS10715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10715;old_locus_tag=SH04_10720 NZ_CP010443.1 Protein Homology CDS 2163162 2163458 . + 0 ID=cds2076;Parent=gene2140;Dbxref=Genbank:WP_000712069.1;Name=WP_000712069.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000712069.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2163481 2163903 . + . ID=gene2141;Name=SH04_RS10720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10720;old_locus_tag=SH04_10725 NZ_CP010443.1 Protein Homology CDS 2163481 2163903 . + 0 ID=cds2077;Parent=gene2141;Dbxref=Genbank:WP_000693797.1;Name=WP_000693797.1;gbkey=CDS;product=Rac prophage%3B uncharacterized protein;protein_id=WP_000693797.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2163916 2164773 . + . ID=gene2142;Name=SH04_RS10725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10725;old_locus_tag=SH04_10730 NZ_CP010443.1 Protein Homology CDS 2163916 2164773 . + 0 ID=cds2078;Parent=gene2142;Dbxref=Genbank:WP_000899748.1;Name=WP_000899748.1;gbkey=CDS;product=Rac prophage%3B conserved protein;protein_id=WP_000899748.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2164780 2165526 . + . ID=gene2143;Name=SH04_RS10730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10730;old_locus_tag=SH04_10735 NZ_CP010443.1 Protein Homology CDS 2164780 2165526 . + 0 ID=cds2079;Parent=gene2143;Dbxref=Genbank:WP_000788970.1;Name=WP_000788970.1;gbkey=CDS;product=Rac prophage%3B DNA replication protein;protein_id=WP_000788970.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2165549 2166001 . + . ID=gene2144;Name=SH04_RS10735;end_range=2166001,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS10735;partial=true;pseudo=true NZ_CP010443.1 Protein Homology CDS 2165549 2166001 . + 0 ID=cds2080;Parent=gene2144;end_range=2166001,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 2165992 2166441 . + . ID=gene2145;Name=SH04_RS10740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10740;old_locus_tag=SH04_10745 NZ_CP010443.1 Protein Homology CDS 2165992 2166441 . + 0 ID=cds2081;Parent=gene2145;Dbxref=Genbank:WP_024262039.1;Name=WP_024262039.1;gbkey=CDS;product=endopeptidase;protein_id=WP_024262039.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2166001 2166366 . + . ID=id131;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2166579 2168036 . + . ID=gene2146;Name=SH04_RS10745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10745;old_locus_tag=SH04_10750 NZ_CP010443.1 Protein Homology CDS 2166579 2168036 . + 0 ID=cds2082;Parent=gene2146;Dbxref=Genbank:WP_001097895.1;Name=WP_001097895.1;gbkey=CDS;product=Trk system potassium uptake protein TrkG;protein_id=WP_001097895.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2168174 2168437 . + . ID=gene2147;Name=SH04_RS10750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10750;old_locus_tag=SH04_10755 NZ_CP010443.1 Protein Homology CDS 2168174 2168437 . + 0 ID=cds2083;Parent=gene2147;Dbxref=Genbank:WP_001350510.1;Name=WP_001350510.1;gbkey=CDS;product=Rac prophage%3B conserved protein;protein_id=WP_001350510.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2168418 2168777 . + . ID=gene2148;Name=SH04_RS10755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10755;old_locus_tag=SH04_10760 NZ_CP010443.1 Protein Homology CDS 2168418 2168777 . + 0 ID=cds2084;Parent=gene2148;Dbxref=Genbank:WP_000091628.1;Name=WP_000091628.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000091628.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2168885 2169085 . + . ID=gene2149;Name=SH04_RS10760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10760;old_locus_tag=SH04_10765 NZ_CP010443.1 Protein Homology CDS 2168885 2169085 . + 0 ID=cds2085;Parent=gene2149;Dbxref=Genbank:WP_001755909.1;Name=WP_001755909.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001755909.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2169251 2170279 . + . ID=gene2150;Name=SH04_RS10765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10765;old_locus_tag=SH04_10770 NZ_CP010443.1 Protein Homology CDS 2169251 2170279 . + 0 ID=cds2086;Parent=gene2150;Dbxref=Genbank:WP_000840614.1;Name=WP_000840614.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000840614.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2170186 2170401 . + . ID=gene2151;Name=SH04_RS10770;end_range=2170401,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS10770;partial=true;pseudo=true;start_range=.,2170186 NZ_CP010443.1 Protein Homology CDS 2170186 2170401 . + 0 ID=cds2087;Parent=gene2151;end_range=2170401,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=enterobacterial Ail/Lom family protein;pseudo=true;start_range=.,2170186;transl_table=11 NZ_CP010443.1 RefSeq gene 2170543 2171523 . - . ID=gene2152;Name=SH04_RS10775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10775;old_locus_tag=SH04_10780 NZ_CP010443.1 Protein Homology CDS 2170543 2171523 . - 0 ID=cds2088;Parent=gene2152;Dbxref=Genbank:WP_000019448.1;Name=WP_000019448.1;gbkey=CDS;product=transposase;protein_id=WP_000019448.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2171593 2171781 . + . ID=gene2153;Name=SH04_RS10780;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS10780;partial=true;pseudo=true;start_range=.,2171593 NZ_CP010443.1 Protein Homology CDS 2171593 2171781 . + 0 ID=cds2089;Parent=gene2153;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=enterobacterial Ail/Lom family protein;pseudo=true;start_range=.,2171593;transl_table=11 NZ_CP010443.1 RefSeq gene 2171782 2171955 . - . ID=gene2154;Name=SH04_RS10785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10785;old_locus_tag=SH04_10790 NZ_CP010443.1 Protein Homology CDS 2171782 2171955 . - 0 ID=cds2090;Parent=gene2154;Dbxref=Genbank:WP_000495484.1;Name=WP_000495484.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000495484.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2172343 2173080 . - . ID=gene2155;Name=SH04_RS10790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10790;old_locus_tag=SH04_10795 NZ_CP010443.1 Protein Homology CDS 2172343 2173080 . - 0 ID=cds2091;Parent=gene2155;Dbxref=Genbank:WP_001186025.1;Name=WP_001186025.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001186025.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2173211 2175208 . + . ID=gene2156;Name=SH04_RS10795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10795;old_locus_tag=SH04_10800 NZ_CP010443.1 Protein Homology CDS 2173211 2175208 . + 0 ID=cds2092;Parent=gene2156;Dbxref=Genbank:WP_001407603.1;Name=WP_001407603.1;gbkey=CDS;product=membrane protein;protein_id=WP_001407603.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2174558 2174862 . + . ID=id132;gbkey=repeat_region NZ_CP010443.1 RefSeq repeat_region 2175023 2177560 . + . ID=id133;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2175208 2175783 . + . ID=gene2157;Name=SH04_RS10800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10800;old_locus_tag=SH04_10805 NZ_CP010443.1 Protein Homology CDS 2175208 2175783 . + 0 ID=cds2093;Parent=gene2157;Dbxref=Genbank:WP_001698950.1;Name=WP_001698950.1;gbkey=CDS;product=Tail fiber assembly protein homolog from lambdoid prophage Rac;protein_id=WP_001698950.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2175881 2176471 . - . ID=gene2158;Name=SH04_RS10805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10805;old_locus_tag=SH04_10810 NZ_CP010443.1 Protein Homology CDS 2175881 2176471 . - 0 ID=cds2094;Parent=gene2158;Dbxref=Genbank:WP_000086527.1;Name=WP_000086527.1;gbkey=CDS;product=Rac prophage%3B site-specific recombinase;protein_id=WP_000086527.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2176788 2177021 . - . ID=gene2159;Name=SH04_RS10810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10810;old_locus_tag=SH04_10815 NZ_CP010443.1 Protein Homology CDS 2176788 2177021 . - 0 ID=cds2095;Parent=gene2159;Dbxref=Genbank:WP_000836770.1;Name=WP_000836770.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_000836770.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2177982 2178416 . - . ID=gene2160;Name=SH04_RS10815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10815;old_locus_tag=SH04_10820 NZ_CP010443.1 Protein Homology CDS 2177982 2178416 . - 0 ID=cds2096;Parent=gene2160;Dbxref=Genbank:WP_001300461.1;Name=WP_001300461.1;gbkey=CDS;product=universal stress protein F;protein_id=WP_001300461.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2178557 2179690 . - . ID=gene2161;Name=SH04_RS10820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10820;old_locus_tag=SH04_10825 NZ_CP010443.1 Protein Homology CDS 2178557 2179690 . - 0 ID=cds2097;Parent=gene2161;Dbxref=Genbank:WP_000837921.1;Name=WP_000837921.1;Note=allows for ions and hydrophilic solutes to cross the outer membrane;gbkey=CDS;product=outer membrane protein N;protein_id=WP_000837921.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2180057 2183581 . - . ID=gene2162;Name=SH04_RS10825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10825;old_locus_tag=SH04_10830 NZ_CP010443.1 Protein Homology CDS 2180057 2183581 . - 0 ID=cds2098;Parent=gene2162;Dbxref=Genbank:WP_000628244.1;Name=WP_000628244.1;gbkey=CDS;product=pyruvate-flavodoxin oxidoreductase;protein_id=WP_000628244.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2183855 2184121 . + . ID=gene2163;Name=SH04_RS10830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10830;old_locus_tag=SH04_10835 NZ_CP010443.1 Protein Homology CDS 2183855 2184121 . + 0 ID=cds2099;Parent=gene2163;Dbxref=Genbank:WP_001295715.1;Name=WP_001295715.1;gbkey=CDS;product=DUF333 domain-containing protein;protein_id=WP_001295715.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2184118 2184540 . - . ID=gene2164;Name=SH04_RS10835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10835;old_locus_tag=SH04_10840 NZ_CP010443.1 Protein Homology CDS 2184118 2184540 . - 0 ID=cds2100;Parent=gene2164;Dbxref=Genbank:WP_001298828.1;Name=WP_001298828.1;gbkey=CDS;product=heat-shock protein HslJ;protein_id=WP_001298828.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2184651 2185640 . - . ID=gene2165;Name=SH04_RS10840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10840;old_locus_tag=SH04_10845 NZ_CP010443.1 Protein Homology CDS 2184651 2185640 . - 0 ID=cds2101;Parent=gene2165;Dbxref=Genbank:WP_000762236.1;Name=WP_000762236.1;Note=fermentative%3B catalyzes the formationof pyruvate from lactate;gbkey=CDS;product=lactate dehydrogenase;protein_id=WP_000762236.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2185848 2188487 . + . ID=gene2166;Name=SH04_RS10845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10845;old_locus_tag=SH04_10850 NZ_CP010443.1 Protein Homology CDS 2185848 2188487 . + 0 ID=cds2102;Parent=gene2166;Dbxref=Genbank:WP_000900941.1;Name=WP_000900941.1;gbkey=CDS;product=membrane-anchored protein%2C function unknown;protein_id=WP_000900941.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2188484 2188669 . + . ID=gene2167;Name=SH04_RS10850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10850;old_locus_tag=SH04_10855 NZ_CP010443.1 Protein Homology CDS 2188484 2188669 . + 0 ID=cds2103;Parent=gene2167;Dbxref=Genbank:WP_000698145.1;Name=WP_000698145.1;gbkey=CDS;product=lipoprotein;protein_id=WP_000698145.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2188677 2189003 . + . ID=gene2168;Name=SH04_RS10855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10855;old_locus_tag=SH04_10860 NZ_CP010443.1 Protein Homology CDS 2188677 2189003 . + 0 ID=cds2104;Parent=gene2168;Dbxref=Genbank:WP_001300734.1;Name=WP_001300734.1;gbkey=CDS;product=DUF1318 domain-containing protein;protein_id=WP_001300734.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2189175 2190080 . - . ID=gene2169;Name=SH04_RS10860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10860;old_locus_tag=SH04_10865 NZ_CP010443.1 Protein Homology CDS 2189175 2190080 . - 0 ID=cds2105;Parent=gene2169;Dbxref=Genbank:WP_001067514.1;Name=WP_001067514.1;Note=activator of genes involved in phenylacetic acid catabolism;gbkey=CDS;product=transcriptional activator FeaR;protein_id=WP_001067514.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2190316 2191815 . + . ID=gene2170;Name=SH04_RS10865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10865;old_locus_tag=SH04_10870 NZ_CP010443.1 Protein Homology CDS 2190316 2191815 . + 0 ID=cds2106;Parent=gene2170;Dbxref=Genbank:WP_000138615.1;Name=WP_000138615.1;gbkey=CDS;product=phenylacetaldehyde dehydrogenase;protein_id=WP_000138615.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2191873 2194146 . - . ID=gene2171;Name=tynA;gbkey=Gene;gene=tynA;gene_biotype=protein_coding;locus_tag=SH04_RS10870;old_locus_tag=SH04_10875 NZ_CP010443.1 Protein Homology CDS 2191873 2194146 . - 0 ID=cds2107;Parent=gene2171;Dbxref=Genbank:WP_000535469.1;Name=WP_000535469.1;Note=catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine;gbkey=CDS;gene=tynA;product=primary amine oxidase;protein_id=WP_000535469.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2194394 2196439 . - . ID=gene2172;Name=SH04_RS10875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10875;old_locus_tag=SH04_10880 NZ_CP010443.1 Protein Homology CDS 2194394 2196439 . - 0 ID=cds2108;Parent=gene2172;Dbxref=Genbank:WP_001186469.1;Name=WP_001186469.1;Note=catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA;gbkey=CDS;product=bifunctional protein PaaZ;protein_id=WP_001186469.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2196724 2197653 . + . ID=gene2173;Name=paaA;gbkey=Gene;gene=paaA;gene_biotype=protein_coding;locus_tag=SH04_RS10880;old_locus_tag=SH04_10885 NZ_CP010443.1 Protein Homology CDS 2196724 2197653 . + 0 ID=cds2109;Parent=gene2173;Dbxref=Genbank:WP_000191077.1;Name=WP_000191077.1;Note=with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA;gbkey=CDS;gene=paaA;product=1%2C2-phenylacetyl-CoA epoxidase subunit A;protein_id=WP_000191077.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2197665 2197952 . + . ID=gene2174;Name=paaB;gbkey=Gene;gene=paaB;gene_biotype=protein_coding;locus_tag=SH04_RS10885;old_locus_tag=SH04_10890 NZ_CP010443.1 Protein Homology CDS 2197665 2197952 . + 0 ID=cds2110;Parent=gene2174;Dbxref=Genbank:WP_000073393.1;Name=WP_000073393.1;Note=with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA%3B involved in phenylacetate degradation;gbkey=CDS;gene=paaB;product=1%2C2-phenylacetyl-CoA epoxidase subunit B;protein_id=WP_000073393.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2197961 2198707 . + . ID=gene2175;Name=SH04_RS10890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10890;old_locus_tag=SH04_10895 NZ_CP010443.1 Protein Homology CDS 2197961 2198707 . + 0 ID=cds2111;Parent=gene2175;Dbxref=Genbank:WP_001072837.1;Name=WP_001072837.1;gbkey=CDS;product=1%2C2-phenylacetyl-CoA epoxidase subunit C;protein_id=WP_001072837.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2198722 2199219 . + . ID=gene2176;Name=SH04_RS10895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10895;old_locus_tag=SH04_10900 NZ_CP010443.1 Protein Homology CDS 2198722 2199219 . + 0 ID=cds2112;Parent=gene2176;Dbxref=Genbank:WP_001189201.1;Name=WP_001189201.1;gbkey=CDS;product=1%2C2-phenylacetyl-CoA epoxidase;protein_id=WP_001189201.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2199227 2200297 . + . ID=gene2177;Name=SH04_RS10900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10900;old_locus_tag=SH04_10905 NZ_CP010443.1 Protein Homology CDS 2199227 2200297 . + 0 ID=cds2113;Parent=gene2177;Dbxref=Genbank:WP_000206388.1;Name=WP_000206388.1;gbkey=CDS;product=1%2C2-phenylacetyl-CoA epoxidase subunit E;protein_id=WP_000206388.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2200294 2201061 . + . ID=gene2178;Name=SH04_RS10905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10905;old_locus_tag=SH04_10910 NZ_CP010443.1 Protein Homology CDS 2200294 2201061 . + 0 ID=cds2114;Parent=gene2178;Dbxref=Genbank:WP_001292353.1;Name=WP_001292353.1;gbkey=CDS;product=2%2C3-dehydroadipyl-CoA hydratase;protein_id=WP_001292353.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2201061 2201849 . + . ID=gene2179;Name=SH04_RS10910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10910;old_locus_tag=SH04_10915 NZ_CP010443.1 Protein Homology CDS 2201061 2201849 . + 0 ID=cds2115;Parent=gene2179;Dbxref=Genbank:WP_000969784.1;Name=WP_000969784.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;product=1%2C2-epoxyphenylacetyl-CoA isomerase;protein_id=WP_000969784.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2201851 2203278 . + . ID=gene2180;Name=SH04_RS10915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10915;old_locus_tag=SH04_10920 NZ_CP010443.1 Protein Homology CDS 2201851 2203278 . + 0 ID=cds2116;Parent=gene2180;Dbxref=Genbank:WP_000973360.1;Name=WP_000973360.1;gbkey=CDS;product=3-hydroxyadipyl-CoA dehydrogenase;protein_id=WP_000973360.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2203268 2203690 . + . ID=gene2181;Name=SH04_RS10920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10920;old_locus_tag=SH04_10925 NZ_CP010443.1 Protein Homology CDS 2203268 2203690 . + 0 ID=cds2117;Parent=gene2181;Dbxref=Genbank:WP_000018413.1;Name=WP_000018413.1;gbkey=CDS;product=acyl-CoA thioesterase;protein_id=WP_000018413.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2203690 2204895 . + . ID=gene2182;Name=SH04_RS10925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10925;old_locus_tag=SH04_10930 NZ_CP010443.1 Protein Homology CDS 2203690 2204895 . + 0 ID=cds2118;Parent=gene2182;Dbxref=Genbank:WP_001206197.1;Name=WP_001206197.1;Note=catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA;gbkey=CDS;product=3-oxoadipyl-CoA/3-oxo-5%2C6-dehydrosuberyl-CoA thiolase;protein_id=WP_001206197.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2204922 2206235 . + . ID=gene2183;Name=SH04_RS10930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10930;old_locus_tag=SH04_10935 NZ_CP010443.1 Protein Homology CDS 2204922 2206235 . + 0 ID=cds2119;Parent=gene2183;Dbxref=Genbank:WP_000632280.1;Name=WP_000632280.1;gbkey=CDS;product=phenylacetate-CoA ligase;protein_id=WP_000632280.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2206336 2207286 . + . ID=gene2184;Name=SH04_RS10935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10935;old_locus_tag=SH04_10940 NZ_CP010443.1 Protein Homology CDS 2206336 2207286 . + 0 ID=cds2120;Parent=gene2184;Dbxref=Genbank:WP_000039887.1;Name=WP_000039887.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000039887.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2207268 2207858 . + . ID=gene2185;Name=SH04_RS10940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10940;old_locus_tag=SH04_10945 NZ_CP010443.1 Protein Homology CDS 2207268 2207858 . + 0 ID=cds2121;Parent=gene2185;Dbxref=Genbank:WP_001123464.1;Name=WP_001123464.1;Note=involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities;gbkey=CDS;product=phenylacetic acid degradation protein PaaY;protein_id=WP_001123464.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2208189 2210714 . + . ID=gene2186;Name=SH04_RS10945;end_range=2210714,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS10945;partial=true;pseudo=true NZ_CP010443.1 Protein Homology CDS 2208189 2210714 . + 0 ID=cds2122;Parent=gene2186;end_range=2210714,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2210706 2212040 . + . ID=id134;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2210718 2211623 . - . ID=gene2187;Name=SH04_RS10950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10950;old_locus_tag=SH04_10955 NZ_CP010443.1 Protein Homology CDS 2210718 2211623 . - 0 ID=cds2123;Parent=gene2187;Dbxref=Genbank:WP_000376502.1;Name=WP_000376502.1;gbkey=CDS;product=integrase;protein_id=WP_000376502.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2211581 2211946 . - . ID=gene2188;Name=SH04_RS10955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10955;old_locus_tag=SH04_10960 NZ_CP010443.1 Protein Homology CDS 2211581 2211946 . - 0 ID=cds2124;Parent=gene2188;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2212093 2213313 . + . ID=id135;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2212155 2213306 . + . ID=gene2189;Name=SH04_RS10960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10960;old_locus_tag=SH04_10965 NZ_CP010443.1 Protein Homology CDS 2212155 2213306 . + 0 ID=cds2125;Parent=gene2189;Dbxref=Genbank:WP_001254932.1;Name=WP_001254932.1;gbkey=CDS;product=transposase;protein_id=WP_001254932.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2213487 2216810 . + . ID=gene2190;Name=SH04_RS10965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10965;old_locus_tag=SH04_10970 NZ_CP010443.1 Protein Homology CDS 2213487 2216810 . + 0 ID=cds2126;Parent=gene2190;Dbxref=Genbank:WP_001491951.1;Name=WP_001491951.1;gbkey=CDS;product=autotransporter subunit beta;protein_id=WP_001491951.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2217018 2217878 . + . ID=gene2191;Name=SH04_RS10970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10970;old_locus_tag=SH04_10975 NZ_CP010443.1 Protein Homology CDS 2217018 2217878 . + 0 ID=cds2127;Parent=gene2191;Dbxref=Genbank:WP_000097801.1;Name=WP_000097801.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000097801.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2217941 2220247 . + . ID=gene2192;Name=SH04_RS10975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10975;old_locus_tag=SH04_10980 NZ_CP010443.1 Protein Homology CDS 2217941 2220247 . + 0 ID=cds2128;Parent=gene2192;Dbxref=Genbank:WP_000910026.1;Name=WP_000910026.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000910026.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2220418 2221023 . + . ID=gene2193;Name=SH04_RS10980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10980;old_locus_tag=SH04_10985 NZ_CP010443.1 Protein Homology CDS 2220418 2221023 . + 0 ID=cds2129;Parent=gene2193;Dbxref=Genbank:WP_000177515.1;Name=WP_000177515.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000177515.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2221023 2221919 . + . ID=gene2194;Name=SH04_RS10985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10985;old_locus_tag=SH04_10990 NZ_CP010443.1 Protein Homology CDS 2221023 2221919 . + 0 ID=cds2130;Parent=gene2194;Dbxref=Genbank:WP_000890941.1;Name=WP_000890941.1;gbkey=CDS;product=CDP-diglyceride synthase;protein_id=WP_000890941.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2221935 2223692 . + . ID=gene2195;Name=SH04_RS10990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10990;old_locus_tag=SH04_10995 NZ_CP010443.1 Protein Homology CDS 2221935 2223692 . + 0 ID=cds2131;Parent=gene2195;Dbxref=Genbank:WP_000431845.1;Name=WP_000431845.1;gbkey=CDS;product=esterase;protein_id=WP_000431845.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2223682 2224998 . + . ID=gene2196;Name=SH04_RS10995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS10995;old_locus_tag=SH04_11000 NZ_CP010443.1 Protein Homology CDS 2223682 2224998 . + 0 ID=cds2132;Parent=gene2196;Dbxref=Genbank:WP_000627368.1;Name=WP_000627368.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000627368.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2225052 2225657 . - . ID=gene2197;Name=SH04_RS11000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11000;old_locus_tag=SH04_11005 NZ_CP010443.1 Protein Homology CDS 2225052 2225657 . - 0 ID=cds2133;Parent=gene2197;Dbxref=Genbank:WP_000048950.1;Name=WP_000048950.1;Note=FMN-dependent%3B requires NADH%3B catalyzes the cleavage of azo bond in aromatic azo compounds;gbkey=CDS;product=FMN-dependent NADH-azoreductase;protein_id=WP_000048950.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2225858 2229760 . + . ID=gene2198;Name=SH04_RS11005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11005;old_locus_tag=SH04_11010 NZ_CP010443.1 Protein Homology CDS 2225858 2229760 . + 0 ID=cds2134;Parent=gene2198;Dbxref=Genbank:WP_000139543.1;Name=WP_000139543.1;Note=involved in the post-transcriptional processing of the daa operon mRNA%2C which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain;gbkey=CDS;product=ATP-dependent RNA helicase HrpA;protein_id=WP_000139543.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2230032 2230832 . + . ID=gene2199;Name=SH04_RS11010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11010;old_locus_tag=SH04_11015 NZ_CP010443.1 Protein Homology CDS 2230032 2230832 . + 0 ID=cds2135;Parent=gene2199;Dbxref=Genbank:WP_001027942.1;Name=WP_001027942.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001027942.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2231029 2232468 . + . ID=gene2200;Name=SH04_RS11015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11015;old_locus_tag=SH04_11020 NZ_CP010443.1 Protein Homology CDS 2231029 2232468 . + 0 ID=cds2136;Parent=gene2200;Dbxref=Genbank:WP_000115943.1;Name=WP_000115943.1;Note=NAD-linked;gbkey=CDS;product=lactaldehyde dehydrogenase;protein_id=WP_000115943.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2232510 2232761 . - . ID=gene2201;Name=SH04_RS11020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11020;old_locus_tag=SH04_11025 NZ_CP010443.1 Protein Homology CDS 2232510 2232761 . - 0 ID=cds2137;Parent=gene2201;Dbxref=Genbank:WP_001310792.1;Name=WP_001310792.1;gbkey=CDS;product=glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_001310792.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2232758 2233135 . - . ID=gene2202;Name=SH04_RS11025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11025;old_locus_tag=SH04_11030 NZ_CP010443.1 Protein Homology CDS 2232758 2233135 . - 0 ID=cds2138;Parent=gene2202;Dbxref=Genbank:WP_001326906.1;Name=WP_001326906.1;gbkey=CDS;product=glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_001326906.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2233394 2233510 . - . ID=gene2203;Name=SH04_RS11030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11030;old_locus_tag=SH04_11035 NZ_CP010443.1 Protein Homology CDS 2233394 2233510 . - 0 ID=cds2139;Parent=gene2203;Dbxref=Genbank:WP_000048641.1;Name=WP_000048641.1;gbkey=CDS;product=glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_000048641.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2233699 2234229 . + . ID=gene2204;Name=SH04_RS11035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11035;old_locus_tag=SH04_11040 NZ_CP010443.1 Protein Homology CDS 2233699 2234229 . + 0 ID=cds2140;Parent=gene2204;Dbxref=Genbank:WP_000428998.1;Name=WP_000428998.1;Note=B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm;gbkey=CDS;product=cytochrome B561;protein_id=WP_000428998.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2234474 2234647 . + . ID=gene2205;Name=SH04_RS11040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11040;old_locus_tag=SH04_11045 NZ_CP010443.1 Protein Homology CDS 2234474 2234647 . + 0 ID=cds2141;Parent=gene2205;Dbxref=Genbank:WP_000731833.1;Name=WP_000731833.1;gbkey=CDS;product=periplasmic protein;protein_id=WP_000731833.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2234719 2234868 . - . ID=gene2206;Name=SH04_RS11045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11045;old_locus_tag=SH04_11050 NZ_CP010443.1 Protein Homology CDS 2234719 2234868 . - 0 ID=cds2142;Parent=gene2206;Dbxref=Genbank:WP_001320773.1;Name=WP_001320773.1;gbkey=CDS;product=protein HokB;protein_id=WP_001320773.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2235267 2236907 . + . ID=gene2207;Name=SH04_RS11050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11050;old_locus_tag=SH04_11055 NZ_CP010443.1 Protein Homology CDS 2235267 2236907 . + 0 ID=cds2143;Parent=gene2207;Dbxref=Genbank:WP_001098559.1;Name=WP_001098559.1;gbkey=CDS;product=methyl-accepting chemotaxis protein III;protein_id=WP_001098559.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2236945 2237868 . - . ID=gene2208;Name=SH04_RS11055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11055;old_locus_tag=SH04_11060 NZ_CP010443.1 Protein Homology CDS 2236945 2237868 . - 0 ID=cds2144;Parent=gene2208;Dbxref=Genbank:WP_000414567.1;Name=WP_000414567.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000414567.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2238085 2239428 . + . ID=gene2209;Name=SH04_RS11060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11060;old_locus_tag=SH04_11065 NZ_CP010443.1 Protein Homology CDS 2238085 2239428 . + 0 ID=cds2145;Parent=gene2209;Dbxref=Genbank:WP_000013789.1;Name=WP_000013789.1;gbkey=CDS;product=metalloenzyme;protein_id=WP_000013789.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2239689 2241308 . + . ID=gene2210;Name=mdoD;gbkey=Gene;gene=mdoD;gene_biotype=protein_coding;gene_synonym=opgD;locus_tag=SH04_RS11065;old_locus_tag=SH04_11070 NZ_CP010443.1 Protein Homology CDS 2239689 2241308 . + 0 ID=cds2146;Parent=gene2210;Dbxref=Genbank:WP_001301029.1;Name=WP_001301029.1;Note=involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans;gbkey=CDS;gene=mdoD;product=glucan biosynthesis protein D;protein_id=WP_001301029.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2241229 2241432 . - . ID=gene2211;Name=SH04_RS11070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11070;old_locus_tag=SH04_11075 NZ_CP010443.1 Protein Homology CDS 2241229 2241432 . - 0 ID=cds2147;Parent=gene2211;Dbxref=Genbank:WP_001303281.1;Name=WP_001303281.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303281.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2241448 2241672 . + . ID=gene2212;Name=SH04_RS11075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11075;old_locus_tag=SH04_11080 NZ_CP010443.1 Protein Homology CDS 2241448 2241672 . + 0 ID=cds2148;Parent=gene2212;Dbxref=Genbank:WP_001296778.1;Name=WP_001296778.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296778.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2241735 2242274 . + . ID=gene2213;Name=SH04_RS11080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11080;old_locus_tag=SH04_11085 NZ_CP010443.1 Protein Homology CDS 2241735 2242274 . + 0 ID=cds2149;Parent=gene2213;Dbxref=Genbank:WP_000140873.1;Name=WP_000140873.1;gbkey=CDS;product=ribosomal-protein-serine acetyltransferase;protein_id=WP_000140873.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2242266 2243246 . - . ID=gene2214;Name=SH04_RS11085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11085;old_locus_tag=SH04_11090 NZ_CP010443.1 Protein Homology CDS 2242266 2243246 . - 0 ID=cds2150;Parent=gene2214;Dbxref=Genbank:WP_001234042.1;Name=WP_001234042.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001234042.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2243358 2244362 . + . ID=gene2215;Name=SH04_RS11090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11090;old_locus_tag=SH04_11095 NZ_CP010443.1 Protein Homology CDS 2243358 2244362 . + 0 ID=cds2151;Parent=gene2215;Dbxref=Genbank:WP_001326905.1;Name=WP_001326905.1;gbkey=CDS;product=tellurite resistance protein TehA;protein_id=WP_001326905.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2244359 2244952 . + . ID=gene2216;Name=SH04_RS11095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11095;old_locus_tag=SH04_11100 NZ_CP010443.1 Protein Homology CDS 2244359 2244952 . + 0 ID=cds2152;Parent=gene2216;Dbxref=Genbank:WP_000586732.1;Name=WP_000586732.1;Note=with TehA confers resistance to tellurite;gbkey=CDS;product=tellurite methyltransferase;protein_id=WP_000586732.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2245254 2245922 . + . ID=gene2217;Name=SH04_RS11100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11100;old_locus_tag=SH04_11105 NZ_CP010443.1 Protein Homology CDS 2245254 2245922 . + 0 ID=cds2153;Parent=gene2217;Dbxref=Genbank:WP_001261013.1;Name=WP_001261013.1;gbkey=CDS;product=lipoprotein;protein_id=WP_001261013.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2245955 2246158 . + . ID=gene2218;Name=SH04_RS11105;end_range=2246158,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS11105;partial=true;pseudo=true;start_range=.,2245955 NZ_CP010443.1 Protein Homology CDS 2245955 2246158 . + 0 ID=cds2154;Parent=gene2218;end_range=2246158,.;gbkey=CDS;partial=true;product=TetR family transcriptional regulator;pseudo=true;start_range=.,2245955;transl_except=(pos:2245997..2245999%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 2246159 2246446 . - . ID=gene2219;Name=SH04_RS11110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11110;old_locus_tag=SH04_11115 NZ_CP010443.1 Protein Homology CDS 2246159 2246446 . - 0 ID=cds2155;Parent=gene2219;Dbxref=Genbank:WP_000604906.1;Name=WP_000604906.1;gbkey=CDS;product=transposase;protein_id=WP_000604906.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2246514 2247662 . + . ID=gene2220;Name=SH04_RS11115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11115;old_locus_tag=SH04_11120 NZ_CP010443.1 Protein Homology CDS 2246514 2247662 . + 0 ID=cds2156;Parent=gene2220;Dbxref=Genbank:WP_001251043.1;Name=WP_001251043.1;gbkey=CDS;product=transposase;protein_id=WP_001251043.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2247702 2248877 . - . ID=gene2221;Name=SH04_RS11120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11120;old_locus_tag=SH04_11125 NZ_CP010443.1 Protein Homology CDS 2247702 2248877 . - 0 ID=cds2157;Parent=gene2221;Dbxref=Genbank:WP_001236265.1;Name=WP_001236265.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001236265.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2248969 2249505 . + . ID=gene2222;Name=SH04_RS11125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11125;old_locus_tag=SH04_11130 NZ_CP010443.1 Protein Homology CDS 2248969 2249505 . + 0 ID=cds2158;Parent=gene2222;Dbxref=Genbank:WP_000429155.1;Name=WP_000429155.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000429155.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2249578 2251539 . + . ID=gene2223;Name=SH04_RS11130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11130;old_locus_tag=SH04_11135 NZ_CP010443.1 Protein Homology CDS 2249578 2251539 . + 0 ID=cds2159;Parent=gene2223;Dbxref=Genbank:WP_001303492.1;Name=WP_001303492.1;gbkey=CDS;product=peptidase;protein_id=WP_001303492.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2251631 2251801 . - . ID=gene2224;Name=SH04_RS11135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11135;old_locus_tag=SH04_11140 NZ_CP010443.1 Protein Homology CDS 2251631 2251801 . - 0 ID=cds2160;Parent=gene2224;Dbxref=Genbank:WP_000907221.1;Name=WP_000907221.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000907221.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2252083 2252259 . + . ID=gene2225;Name=SH04_RS11140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11140;old_locus_tag=SH04_11145 NZ_CP010443.1 Protein Homology CDS 2252083 2252259 . + 0 ID=cds2161;Parent=gene2225;Dbxref=Genbank:WP_000813794.1;Name=WP_000813794.1;gbkey=CDS;product=mRNA interferase HicA;protein_id=WP_000813794.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2252284 2252721 . + . ID=gene2226;Name=SH04_RS11145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11145;old_locus_tag=SH04_11150 NZ_CP010443.1 Protein Homology CDS 2252284 2252721 . + 0 ID=cds2162;Parent=gene2226;Dbxref=Genbank:WP_001209405.1;Name=WP_001209405.1;gbkey=CDS;product=antitoxin;protein_id=WP_001209405.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2252800 2254206 . + . ID=gene2227;Name=SH04_RS11150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11150;old_locus_tag=SH04_11155 NZ_CP010443.1 Protein Homology CDS 2252800 2254206 . + 0 ID=cds2163;Parent=gene2227;Dbxref=Genbank:WP_000760626.1;Name=WP_000760626.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000760626.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2254451 2255596 . + . ID=gene2228;Name=SH04_RS11155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11155;old_locus_tag=SH04_11160 NZ_CP010443.1 Protein Homology CDS 2254451 2255596 . + 0 ID=cds2164;Parent=gene2228;Dbxref=Genbank:WP_000047424.1;Name=WP_000047424.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_000047424.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2255614 2256627 . + . ID=gene2229;Name=SH04_RS11160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11160;old_locus_tag=SH04_11165 NZ_CP010443.1 Protein Homology CDS 2255614 2256627 . + 0 ID=cds2165;Parent=gene2229;Dbxref=Genbank:WP_000220396.1;Name=WP_000220396.1;gbkey=CDS;product=ABC transporter ATPase;protein_id=WP_000220396.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2256628 2257569 . + . ID=gene2230;Name=SH04_RS11165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11165;old_locus_tag=SH04_11170 NZ_CP010443.1 Protein Homology CDS 2256628 2257569 . + 0 ID=cds2166;Parent=gene2230;Dbxref=Genbank:WP_001251304.1;Name=WP_001251304.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_001251304.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2257559 2258353 . + . ID=gene2231;Name=SH04_RS11170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11170;old_locus_tag=SH04_11175 NZ_CP010443.1 Protein Homology CDS 2257559 2258353 . + 0 ID=cds2167;Parent=gene2231;Dbxref=Genbank:WP_000555458.1;Name=WP_000555458.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_000555458.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2258375 2259799 . + . ID=gene2232;Name=SH04_RS11175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11175;old_locus_tag=SH04_11180 NZ_CP010443.1 Protein Homology CDS 2258375 2259799 . + 0 ID=cds2168;Parent=gene2232;Dbxref=Genbank:WP_001163872.1;Name=WP_001163872.1;Note=catalyzes the formation of 4-aminobutanoate from 4-aminobutanal%3B involved in putrescine degradation;gbkey=CDS;product=gamma-aminobutyraldehyde dehydrogenase;protein_id=WP_001163872.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2259830 2260027 . + . ID=gene2233;Name=SH04_RS11180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11180;old_locus_tag=SH04_11185 NZ_CP010443.1 Protein Homology CDS 2259830 2260027 . + 0 ID=cds2169;Parent=gene2233;Dbxref=Genbank:WP_023150035.1;Name=WP_023150035.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023150035.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2260186 2260359 . + . ID=gene2234;Name=SH04_RS11185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11185;old_locus_tag=SH04_11190 NZ_CP010443.1 Protein Homology CDS 2260186 2260359 . + 0 ID=cds2170;Parent=gene2234;Dbxref=Genbank:WP_000061178.1;Name=WP_000061178.1;gbkey=CDS;product=DUF2566 domain-containing protein;protein_id=WP_000061178.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2260445 2260678 . + . ID=gene2235;Name=SH04_RS11190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11190;old_locus_tag=SH04_11195 NZ_CP010443.1 Protein Homology CDS 2260445 2260678 . + 0 ID=cds2171;Parent=gene2235;Dbxref=Genbank:WP_000018633.1;Name=WP_000018633.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000018633.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2260679 2261128 . - . ID=gene2236;Name=SH04_RS11195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11195;old_locus_tag=SH04_11200 NZ_CP010443.1 Protein Homology CDS 2260679 2261128 . - 0 ID=cds2172;Parent=gene2236;Dbxref=Genbank:WP_001076535.1;Name=WP_001076535.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001076535.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2261125 2261643 . - . ID=gene2237;Name=SH04_RS11200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11200;old_locus_tag=SH04_11205 NZ_CP010443.1 Protein Homology CDS 2261125 2261643 . - 0 ID=cds2173;Parent=gene2237;Dbxref=Genbank:WP_001310799.1;Name=WP_001310799.1;gbkey=CDS;product=L-amino acid N-acyltransferase MnaT;protein_id=WP_001310799.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2261824 2262861 . + . ID=gene2238;Name=SH04_RS11205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11205;old_locus_tag=SH04_11210 NZ_CP010443.1 Protein Homology CDS 2261824 2262861 . + 0 ID=cds2174;Parent=gene2238;Dbxref=Genbank:WP_000531462.1;Name=WP_000531462.1;gbkey=CDS;product=NADPH-dependent curcumin reductase;protein_id=WP_000531462.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2263059 2263724 . + . ID=gene2239;Name=SH04_RS11210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11210;old_locus_tag=SH04_11215 NZ_CP010443.1 Protein Homology CDS 2263059 2263724 . + 0 ID=cds2175;Parent=gene2239;Dbxref=Genbank:WP_001300742.1;Name=WP_001300742.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001300742.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2263760 2265862 . - . ID=gene2240;Name=SH04_RS11215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11215;old_locus_tag=SH04_11220 NZ_CP010443.1 Protein Homology CDS 2263760 2265862 . - 0 ID=cds2176;Parent=gene2240;Dbxref=Genbank:WP_000689363.1;Name=WP_000689363.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_000689363.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2266104 2267165 . + . ID=gene2241;Name=SH04_RS11220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11220;old_locus_tag=SH04_11225 NZ_CP010443.1 Protein Homology CDS 2266104 2267165 . + 0 ID=cds2177;Parent=gene2241;Dbxref=Genbank:WP_000550695.1;Name=WP_000550695.1;gbkey=CDS;product=ATP-binding protein%2C periplasmic%2C function unknown;protein_id=WP_000550695.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2267278 2268777 . - . ID=gene2242;Name=SH04_RS11225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11225;old_locus_tag=SH04_11230 NZ_CP010443.1 Protein Homology CDS 2267278 2268777 . - 0 ID=cds2178;Parent=gene2242;Dbxref=Genbank:WP_001300590.1;Name=WP_001300590.1;Note=involved in the transporte of L-asparagine;gbkey=CDS;product=L-asparagine permease;protein_id=WP_001300590.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2269044 2269661 . + . ID=gene2243;Name=SH04_RS11230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11230;old_locus_tag=SH04_11235 NZ_CP010443.1 Protein Homology CDS 2269044 2269661 . + 0 ID=cds2179;Parent=gene2243;Dbxref=Genbank:WP_000598857.1;Name=WP_000598857.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_000598857.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2269737 2269949 . + . ID=gene2244;Name=SH04_RS11235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11235;old_locus_tag=SH04_11240 NZ_CP010443.1 Protein Homology CDS 2269737 2269949 . + 0 ID=cds2180;Parent=gene2244;Dbxref=Genbank:WP_000226995.1;Name=WP_000226995.1;gbkey=CDS;product=IPR020099 family protein;protein_id=WP_000226995.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2270741 2272248 . + . ID=id136;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2270936 2272735 . + . ID=gene2245;Name=SH04_RS11240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11240;old_locus_tag=SH04_11245 NZ_CP010443.1 Protein Homology CDS 2270936 2272735 . + 0 ID=cds2181;Parent=gene2245;Dbxref=Genbank:WP_042405549.1;Name=WP_042405549.1;gbkey=CDS;product=type IV secretion protein Rhs;protein_id=WP_042405549.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2272719 2273201 . + . ID=gene2246;Name=SH04_RS11245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11245;old_locus_tag=SH04_11250 NZ_CP010443.1 Protein Homology CDS 2272719 2273201 . + 0 ID=cds2182;Parent=gene2246;Dbxref=Genbank:WP_000939263.1;Name=WP_000939263.1;gbkey=CDS;product=immunity protein for RhsE;protein_id=WP_000939263.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2273383 2274129 . + . ID=gene2247;Name=SH04_RS11250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11250;old_locus_tag=SH04_11255 NZ_CP010443.1 Protein Homology CDS 2273383 2274129 . + 0 ID=cds2183;Parent=gene2247;Dbxref=Genbank:WP_001310803.1;Name=WP_001310803.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001310803.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2274469 2275759 . + . ID=id137;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2274613 2275749 . + . ID=gene2248;Name=SH04_RS11255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11255;old_locus_tag=SH04_11260 NZ_CP010443.1 Protein Homology CDS 2274613 2275749 . + 0 ID=cds2184;Parent=gene2248;Dbxref=Genbank:WP_000421020.1;Name=WP_000421020.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000421020.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2275849 2276082 . + . ID=gene2249;Name=SH04_RS11260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11260;old_locus_tag=SH04_11265 NZ_CP010443.1 Protein Homology CDS 2275849 2276082 . + 0 ID=cds2185;Parent=gene2249;Dbxref=Genbank:WP_001120143.1;Name=WP_001120143.1;Note=4-OT%3B member of subfamily 5%3B forms a dimer%3B the function in the Escherichia coli cell is unknown;gbkey=CDS;product=tautomerase PptA;protein_id=WP_001120143.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2276079 2276648 . - . ID=gene2250;Name=SH04_RS11265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11265;old_locus_tag=SH04_11270 NZ_CP010443.1 Protein Homology CDS 2276079 2276648 . - 0 ID=cds2186;Parent=gene2250;Dbxref=Genbank:WP_000085899.1;Name=WP_000085899.1;gbkey=CDS;product=flavin reductase like-protein;protein_id=WP_000085899.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2276821 2277666 . + . ID=gene2251;Name=SH04_RS11270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11270;old_locus_tag=SH04_11275 NZ_CP010443.1 Protein Homology CDS 2276821 2277666 . + 0 ID=cds2187;Parent=gene2251;Dbxref=Genbank:WP_000187925.1;Name=WP_000187925.1;Note=catalyzes the addition of the acetyl moity of acetyl-CoA to an N-hydroxy-arylamine to form an N-acetoxyarylamine;gbkey=CDS;product=N-hydroxyarylamine O-acetyltransferase;protein_id=WP_000187925.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2277762 2278655 . - . ID=gene2252;Name=SH04_RS11275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11275;old_locus_tag=SH04_11280 NZ_CP010443.1 Protein Homology CDS 2277762 2278655 . - 0 ID=cds2188;Parent=gene2252;Dbxref=Genbank:WP_000804385.1;Name=WP_000804385.1;gbkey=CDS;product=PhzC-PhzF family protein;protein_id=WP_000804385.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2278734 2279414 . - . ID=gene2253;Name=narI;gbkey=Gene;gene=narI;gene_biotype=protein_coding;locus_tag=SH04_RS11280;old_locus_tag=SH04_11285 NZ_CP010443.1 Protein Homology CDS 2278734 2279414 . - 0 ID=cds2189;Parent=gene2253;Dbxref=Genbank:WP_000617115.1;Name=WP_000617115.1;Note=with NarGJH catalyzes the reduction of nitrate%3B the gamma subunit localizes NarGHI to the membrane%3B one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high;gbkey=CDS;gene=narI;product=respiratory nitrate reductase subunit gamma;protein_id=WP_000617115.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2279411 2280106 . - . ID=gene2254;Name=SH04_RS11285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11285;old_locus_tag=SH04_11290 NZ_CP010443.1 Protein Homology CDS 2279411 2280106 . - 0 ID=cds2190;Parent=gene2254;Dbxref=Genbank:WP_001166353.1;Name=WP_001166353.1;Note=delta subunit of nitrate reductase 1%3B chaperone for the insertion of the molybdenum cofactor and assembly of nitrate reductase 1;gbkey=CDS;product=nitrate reductase molybdenum cofactor assembly chaperone NarW;protein_id=WP_001166353.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2280106 2281650 . - . ID=gene2255;Name=narH;gbkey=Gene;gene=narH;gene_biotype=protein_coding;locus_tag=SH04_RS11290;old_locus_tag=SH04_11295 NZ_CP010443.1 Protein Homology CDS 2280106 2281650 . - 0 ID=cds2191;Parent=gene2255;Dbxref=Genbank:WP_000702535.1;Name=WP_000702535.1;Note=with NarGJI catalyzes the reduction of nitrate%3B the beta subunit is an iron sulfur cluster containing electron transfer subunit%3B one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high;gbkey=CDS;gene=narH;product=nitrate reductase subunit beta;protein_id=WP_000702535.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2281647 2285387 . - . ID=gene2256;Name=narZ;gbkey=Gene;gene=narZ;gene_biotype=protein_coding;locus_tag=SH04_RS11295;old_locus_tag=SH04_11300 NZ_CP010443.1 Protein Homology CDS 2281647 2285387 . - 0 ID=cds2192;Parent=gene2256;Dbxref=Genbank:WP_000040458.1;Name=WP_000040458.1;Note=with NarYV catalyzes the reduction of nitrate%3B the beta subunit is an iron sulfur cluster containing electron transfer subunit%3B one of 3 nitrate reductases in E. coli%3B expression of nitrate reductase Z is not dependent on nitrate levels;gbkey=CDS;gene=narZ;product=respiratory nitrate reductase 2 alpha chain;protein_id=WP_000040458.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2285469 2286857 . - . ID=gene2257;Name=SH04_RS11300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11300;old_locus_tag=SH04_11305 NZ_CP010443.1 Protein Homology CDS 2285469 2286857 . - 0 ID=cds2193;Parent=gene2257;Dbxref=Genbank:WP_001207901.1;Name=WP_001207901.1;Note=involved in the transport of nitrate and nitrite;gbkey=CDS;product=nitrate/nitrite transporter NarU;protein_id=WP_001207901.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2287181 2288511 . - . ID=gene2258;Name=SH04_RS11305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS11305;pseudo=true NZ_CP010443.1 Protein Homology CDS 2287181 2288511 . - 0 ID=cds2194;Parent=gene2258;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 2288535 2288825 . - . ID=gene2259;Name=SH04_RS11310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11310;old_locus_tag=SH04_11315 NZ_CP010443.1 Protein Homology CDS 2288535 2288825 . - 0 ID=cds2195;Parent=gene2259;Dbxref=Genbank:WP_000768384.1;Name=WP_000768384.1;gbkey=CDS;product=lipoprotein;protein_id=WP_000768384.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2289085 2289909 . - . ID=gene2260;Name=SH04_RS11315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11315;old_locus_tag=SH04_11320 NZ_CP010443.1 Protein Homology CDS 2289085 2289909 . - 0 ID=cds2196;Parent=gene2260;Dbxref=Genbank:WP_001340254.1;Name=WP_001340254.1;gbkey=CDS;product=aromatic amino acid exporter;protein_id=WP_001340254.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2290198 2290785 . + . ID=gene2261;Name=SH04_RS11320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11320;old_locus_tag=SH04_11325 NZ_CP010443.1 Protein Homology CDS 2290198 2290785 . + 0 ID=cds2197;Parent=gene2261;Dbxref=Genbank:WP_000383354.1;Name=WP_000383354.1;gbkey=CDS;product=sulfate ABC transporter substrate-binding protein;protein_id=WP_000383354.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2290834 2293245 . + . ID=gene2262;Name=SH04_RS11325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11325;old_locus_tag=SH04_11330 NZ_CP010443.1 Protein Homology CDS 2290834 2293245 . + 0 ID=cds2198;Parent=gene2262;Dbxref=Genbank:WP_000181668.1;Name=WP_000181668.1;gbkey=CDS;product=formate dehydrogenase subunit alpha;protein_id=WP_000181668.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2293258 2294142 . + . ID=gene2263;Name=SH04_RS11330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11330;old_locus_tag=SH04_11335 NZ_CP010443.1 Protein Homology CDS 2293258 2294142 . + 0 ID=cds2199;Parent=gene2263;Dbxref=Genbank:WP_001240582.1;Name=WP_001240582.1;Note=beta subunit%3B involved in the use of formate as an electron donor during aerobic respiration%3B acts to transfer electrons from the major(alpha subunit) to the cytochrome b556(gamma subunit);gbkey=CDS;product=formate dehydrogenase nitrate-inducible iron-sulfur subunit;protein_id=WP_001240582.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2294135 2294788 . + . ID=gene2264;Name=SH04_RS11335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11335;old_locus_tag=SH04_11340 NZ_CP010443.1 Protein Homology CDS 2294135 2294788 . + 0 ID=cds2200;Parent=gene2264;Dbxref=Genbank:WP_000045648.1;Name=WP_000045648.1;Note=cytochrome b556(FDO) component%3B heme containing;gbkey=CDS;product=formate dehydrogenase nitrate-inducible cytochrome b556(Fdn) subunit;protein_id=WP_000045648.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2294811 2294986 . + . ID=id138;gbkey=repeat_region NZ_CP010443.1 RefSeq repeat_region 2294989 2295164 . + . ID=id139;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2295195 2295479 . - . ID=gene2265;Name=SH04_RS11340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11340;old_locus_tag=SH04_11345 NZ_CP010443.1 Protein Homology CDS 2295195 2295479 . - 0 ID=cds2201;Parent=gene2265;Dbxref=Genbank:WP_000781370.1;Name=WP_000781370.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000781370.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2295625 2296635 . - . ID=gene2266;Name=adhP;gbkey=Gene;gene=adhP;gene_biotype=protein_coding;gene_synonym=adhA;locus_tag=SH04_RS11345;old_locus_tag=SH04_11350 NZ_CP010443.1 Protein Homology CDS 2295625 2296635 . - 0 ID=cds2202;Parent=gene2266;Dbxref=Genbank:WP_000642433.1;Name=WP_000642433.1;Note=similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs;gbkey=CDS;gene=adhP;product=alcohol dehydrogenase;protein_id=WP_000642433.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2296769 2298466 . - . ID=gene2267;Name=SH04_RS11350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11350;old_locus_tag=SH04_11355 NZ_CP010443.1 Protein Homology CDS 2296769 2298466 . - 0 ID=cds2203;Parent=gene2267;Dbxref=Genbank:WP_000433476.1;Name=WP_000433476.1;gbkey=CDS;product=NAD-dependent malic enzyme;protein_id=WP_000433476.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2298623 2298760 . - . ID=gene2268;Name=rpsV;gbkey=Gene;gene=rpsV;gene_biotype=protein_coding;gene_synonym=sra;locus_tag=SH04_RS11355;old_locus_tag=SH04_11360 NZ_CP010443.1 Protein Homology CDS 2298623 2298760 . - 0 ID=cds2204;Parent=gene2268;Dbxref=Genbank:WP_000841554.1;Name=WP_000841554.1;Note=protein D%3B stationary-phase-induced ribosome-associated%3B in Escherichia coli this protein becomes associated with the ribosome%3B expression increases during stationary phase;gbkey=CDS;gene=rpsV;product=stationary-phase-induced ribosome-associated protein;protein_id=WP_000841554.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2298862 2299077 . - . ID=gene2269;Name=SH04_RS11360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11360;old_locus_tag=SH04_11365 NZ_CP010443.1 Protein Homology CDS 2298862 2299077 . - 0 ID=cds2205;Parent=gene2269;Dbxref=Genbank:WP_000495771.1;Name=WP_000495771.1;gbkey=CDS;product=protein bdm;protein_id=WP_000495771.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2299422 2299853 . + . ID=gene2270;Name=SH04_RS11365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11365;old_locus_tag=SH04_11370 NZ_CP010443.1 Protein Homology CDS 2299422 2299853 . + 0 ID=cds2206;Parent=gene2270;Dbxref=Genbank:WP_000152305.1;Name=WP_000152305.1;gbkey=CDS;product=peroxiredoxin OsmC;protein_id=WP_000152305.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2299909 2300835 . - . ID=gene2271;Name=SH04_RS11370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11370;old_locus_tag=SH04_11375 NZ_CP010443.1 Protein Homology CDS 2299909 2300835 . - 0 ID=cds2207;Parent=gene2271;Dbxref=Genbank:WP_001285536.1;Name=WP_001285536.1;gbkey=CDS;product=peptide ABC transporter ATP-binding protein;protein_id=WP_001285536.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2300828 2301814 . - . ID=gene2272;Name=SH04_RS11375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11375;old_locus_tag=SH04_11380 NZ_CP010443.1 Protein Homology CDS 2300828 2301814 . - 0 ID=cds2208;Parent=gene2272;Dbxref=Genbank:WP_000193547.1;Name=WP_000193547.1;gbkey=CDS;product=peptide ABC transporter ATP-binding protein;protein_id=WP_000193547.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2301811 2302707 . - . ID=gene2273;Name=SH04_RS11380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11380;old_locus_tag=SH04_11385 NZ_CP010443.1 Protein Homology CDS 2301811 2302707 . - 0 ID=cds2209;Parent=gene2273;Dbxref=Genbank:WP_000979626.1;Name=WP_000979626.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_000979626.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2302704 2303726 . - . ID=gene2274;Name=SH04_RS11385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11385;old_locus_tag=SH04_11390 NZ_CP010443.1 Protein Homology CDS 2302704 2303726 . - 0 ID=cds2210;Parent=gene2274;Dbxref=Genbank:WP_000145123.1;Name=WP_000145123.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_000145123.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2303728 2305278 . - . ID=gene2275;Name=SH04_RS11390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11390;old_locus_tag=SH04_11395 NZ_CP010443.1 Protein Homology CDS 2303728 2305278 . - 0 ID=cds2211;Parent=gene2275;Dbxref=Genbank:WP_000830550.1;Name=WP_000830550.1;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_000830550.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2305292 2305873 . - . ID=gene2276;Name=SH04_RS11395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11395;old_locus_tag=SH04_11400 NZ_CP010443.1 Protein Homology CDS 2305292 2305873 . - 0 ID=cds2212;Parent=gene2276;Dbxref=Genbank:WP_001285833.1;Name=WP_001285833.1;Note=catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent%3B involved in peptidoglycan synthesis;gbkey=CDS;product=D-alanyl-D-alanine dipeptidase;protein_id=WP_001285833.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2306131 2308554 . - . ID=gene2277;Name=SH04_RS11400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11400;old_locus_tag=SH04_11405 NZ_CP010443.1 Protein Homology CDS 2306131 2308554 . - 0 ID=cds2213;Parent=gene2277;Dbxref=Genbank:WP_001248237.1;Name=WP_001248237.1;Note=heme-regulated phosphodiesterase with phosphodiesterase activity with cGMP%3B cold- and stationary phase-induced bioflim regulator%3B oxygen sensor;gbkey=CDS;product=diguanylate phosphodiesterase;protein_id=WP_001248237.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2308555 2309937 . - . ID=gene2278;Name=SH04_RS11405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11405;old_locus_tag=SH04_11410 NZ_CP010443.1 Protein Homology CDS 2308555 2309937 . - 0 ID=cds2214;Parent=gene2278;Dbxref=Genbank:WP_000426292.1;Name=WP_000426292.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_000426292.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2310301 2311455 . - . ID=gene2279;Name=SH04_RS11410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11410;old_locus_tag=SH04_11415 NZ_CP010443.1 Protein Homology CDS 2310301 2311455 . - 0 ID=cds2215;Parent=gene2279;Dbxref=Genbank:WP_001324546.1;Name=WP_001324546.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001324546.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2311751 2313286 . - . ID=gene2280;Name=SH04_RS11415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11415;old_locus_tag=SH04_11420 NZ_CP010443.1 Protein Homology CDS 2311751 2313286 . - 0 ID=cds2216;Parent=gene2280;Dbxref=Genbank:WP_000246019.1;Name=WP_000246019.1;gbkey=CDS;product=glutamate/gamma-aminobutyrate antiporter;protein_id=WP_000246019.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2313438 2314809 . + . ID=id140;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2313442 2314842 . - . ID=gene2281;Name=SH04_RS11420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11420;old_locus_tag=SH04_11425 NZ_CP010443.1 Protein Homology CDS 2313442 2314842 . - 0 ID=cds2217;Parent=gene2281;Dbxref=Genbank:WP_000358930.1;Name=WP_000358930.1;gbkey=CDS;product=glutamate decarboxylase beta;protein_id=WP_000358930.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2314853 2314951 . - . ID=gene2282;Name=SH04_RS11425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11425;old_locus_tag=SH04_11430 NZ_CP010443.1 Protein Homology CDS 2314853 2314951 . - 0 ID=cds2218;Parent=gene2282;Dbxref=Genbank:WP_032083229.1;Name=WP_032083229.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032083229.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2315204 2317987 . - . ID=gene2283;Name=SH04_RS11430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11430;old_locus_tag=SH04_11435 NZ_CP010443.1 Protein Homology CDS 2315204 2317987 . - 0 ID=cds2219;Parent=gene2283;Dbxref=Genbank:WP_001244968.1;Name=WP_001244968.1;gbkey=CDS;product=zinc protease;protein_id=WP_001244968.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2318044 2320416 . - . ID=gene2284;Name=SH04_RS11435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11435;old_locus_tag=SH04_11440 NZ_CP010443.1 Protein Homology CDS 2318044 2320416 . - 0 ID=cds2220;Parent=gene2284;Dbxref=Genbank:WP_000832437.1;Name=WP_000832437.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_000832437.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2320454 2322139 . - . ID=gene2285;Name=SH04_RS11440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11440;old_locus_tag=SH04_11445 NZ_CP010443.1 Protein Homology CDS 2320454 2322139 . - 0 ID=cds2221;Parent=gene2285;Dbxref=Genbank:WP_000628576.1;Name=WP_000628576.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_000628576.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2322430 2323587 . - . ID=gene2286;Name=SH04_RS11445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11445;old_locus_tag=SH04_11450 NZ_CP010443.1 Protein Homology CDS 2322430 2323587 . - 0 ID=cds2222;Parent=gene2286;Dbxref=Genbank:WP_001301030.1;Name=WP_001301030.1;gbkey=CDS;product=anaerobic sulfatase maturase;protein_id=WP_001301030.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2323639 2325321 . - . ID=gene2287;Name=SH04_RS11450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11450;old_locus_tag=SH04_11455 NZ_CP010443.1 Protein Homology CDS 2323639 2325321 . - 0 ID=cds2223;Parent=gene2287;Dbxref=Genbank:WP_001295684.1;Name=WP_001295684.1;gbkey=CDS;product=Ser-type periplasmic non-aryl sulfatase;protein_id=WP_001295684.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2325723 2326484 . - . ID=gene2288;Name=SH04_RS11455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11455;old_locus_tag=SH04_11460 NZ_CP010443.1 Protein Homology CDS 2325723 2326484 . - 0 ID=cds2224;Parent=gene2288;Dbxref=Genbank:WP_000060495.1;Name=WP_000060495.1;Note=regulates the cellular response to acid resistance;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000060495.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2326559 2326756 . - . ID=gene2289;Name=SH04_RS11460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11460;old_locus_tag=SH04_11465 NZ_CP010443.1 Protein Homology CDS 2326559 2326756 . - 0 ID=cds2225;Parent=gene2289;Dbxref=Genbank:WP_000543384.1;Name=WP_000543384.1;gbkey=CDS;product=two-component-system connector protein SafA;protein_id=WP_000543384.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2327004 2329283 . - . ID=gene2290;Name=SH04_RS11465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11465;old_locus_tag=SH04_11470 NZ_CP010443.1 Protein Homology CDS 2327004 2329283 . - 0 ID=cds2226;Parent=gene2290;Dbxref=Genbank:WP_000726691.1;Name=WP_000726691.1;Note=in Escherichia coli it may be involved in repression of type III secretion system (TTSS) genes of the host cell%3B involved with increased resistance to low pH%3B member of the prokaryotic molybdopterin-containing oxidoreductase family;gbkey=CDS;product=hypothetical protein;protein_id=WP_000726691.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2329617 2330531 . - . ID=gene2291;Name=SH04_RS11470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11470;old_locus_tag=SH04_11475 NZ_CP010443.1 Protein Homology CDS 2329617 2330531 . - 0 ID=cds2227;Parent=gene2291;Dbxref=Genbank:WP_000520676.1;Name=WP_000520676.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_000520676.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2330590 2331093 . - . ID=gene2292;Name=SH04_RS11475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11475;old_locus_tag=SH04_11480 NZ_CP010443.1 Protein Homology CDS 2330590 2331093 . - 0 ID=cds2228;Parent=gene2292;Dbxref=Genbank:WP_000825452.1;Name=WP_000825452.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_000825452.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2331106 2331636 . - . ID=gene2293;Name=SH04_RS11480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11480;old_locus_tag=SH04_11485 NZ_CP010443.1 Protein Homology CDS 2331106 2331636 . - 0 ID=cds2229;Parent=gene2293;Dbxref=Genbank:WP_000876763.1;Name=WP_000876763.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_000876763.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2331650 2332798 . - . ID=gene2294;Name=SH04_RS11485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11485;old_locus_tag=SH04_11490 NZ_CP010443.1 Protein Homology CDS 2331650 2332798 . - 0 ID=cds2230;Parent=gene2294;Dbxref=Genbank:WP_000017447.1;Name=WP_000017447.1;gbkey=CDS;product=fimbrial protein FimD;protein_id=WP_000017447.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2333154 2333333 . - . ID=gene2295;Name=SH04_RS11490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11490;old_locus_tag=SH04_11495 NZ_CP010443.1 Protein Homology CDS 2333154 2333333 . - 0 ID=cds2231;Parent=gene2295;Dbxref=Genbank:WP_001310818.1;Name=WP_001310818.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001310818.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2333651 2334973 . - . ID=gene2296;Name=SH04_RS11495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11495;old_locus_tag=SH04_11500 NZ_CP010443.1 Protein Homology CDS 2333651 2334973 . - 0 ID=cds2232;Parent=gene2296;Dbxref=Genbank:WP_001125439.1;Name=WP_001125439.1;gbkey=CDS;product=serine/threonine protein kinase;protein_id=WP_001125439.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2334973 2335239 . - . ID=gene2297;Name=SH04_RS11500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11500;old_locus_tag=SH04_11505 NZ_CP010443.1 Protein Homology CDS 2334973 2335239 . - 0 ID=cds2233;Parent=gene2297;Dbxref=Genbank:WP_001301023.1;Name=WP_001301023.1;gbkey=CDS;product=antitoxin HipB;protein_id=WP_001301023.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2335462 2336862 . - . ID=gene2298;Name=SH04_RS11505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11505;old_locus_tag=SH04_11510 NZ_CP010443.1 Protein Homology CDS 2335462 2336862 . - 0 ID=cds2234;Parent=gene2298;Dbxref=Genbank:WP_001083595.1;Name=WP_001083595.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001083595.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2336906 2340883 . - . ID=gene2299;Name=SH04_RS11510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11510;old_locus_tag=SH04_11515 NZ_CP010443.1 Protein Homology CDS 2336906 2340883 . - 0 ID=cds2235;Parent=gene2299;Dbxref=Genbank:WP_011443591.1;Name=WP_011443591.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011443591.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2341414 2343006 . - . ID=gene2300;Name=SH04_RS11515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11515;old_locus_tag=SH04_11520 NZ_CP010443.1 Protein Homology CDS 2341414 2343006 . - 0 ID=cds2236;Parent=gene2300;Dbxref=Genbank:WP_000113108.1;Name=WP_000113108.1;gbkey=CDS;product=autoinducer 2 kinase LsrK;protein_id=WP_000113108.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2343085 2344038 . - . ID=gene2301;Name=SH04_RS11520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11520;old_locus_tag=SH04_11525 NZ_CP010443.1 Protein Homology CDS 2343085 2344038 . - 0 ID=cds2237;Parent=gene2301;Dbxref=Genbank:WP_038432569.1;Name=WP_038432569.1;Note=regulates the transcription of lsr genes%3B involved in autoinducer 2 uptake%2C biofilm formation and stress responses;gbkey=CDS;product=LsrR family transcriptional regulator;protein_id=WP_038432569.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2344287 2345822 . + . ID=gene2302;Name=SH04_RS11525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11525;old_locus_tag=SH04_11530 NZ_CP010443.1 Protein Homology CDS 2344287 2345822 . + 0 ID=cds2238;Parent=gene2302;Dbxref=Genbank:WP_001194860.1;Name=WP_001194860.1;gbkey=CDS;product=autoinducer 2 import ATP-binding protein LsrA;protein_id=WP_001194860.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2345816 2346844 . + . ID=gene2303;Name=SH04_RS11530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11530;old_locus_tag=SH04_11535 NZ_CP010443.1 Protein Homology CDS 2345816 2346844 . + 0 ID=cds2239;Parent=gene2303;Dbxref=Genbank:WP_000911184.1;Name=WP_000911184.1;Note=with LsrADB is involved in the transport of autoindiuce 2;gbkey=CDS;product=autoinducer 2 import system permease LsrC;protein_id=WP_000911184.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2346844 2347836 . + . ID=gene2304;Name=SH04_RS11535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11535;old_locus_tag=SH04_11540 NZ_CP010443.1 Protein Homology CDS 2346844 2347836 . + 0 ID=cds2240;Parent=gene2304;Dbxref=Genbank:WP_001222721.1;Name=WP_001222721.1;gbkey=CDS;product=autoinducer 2 import system permease LsrD;protein_id=WP_001222721.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2347848 2348870 . + . ID=gene2305;Name=SH04_RS11540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11540;old_locus_tag=SH04_11545 NZ_CP010443.1 Protein Homology CDS 2347848 2348870 . + 0 ID=cds2241;Parent=gene2305;Dbxref=Genbank:WP_000172465.1;Name=WP_000172465.1;Note=with lsrACD is involved in the transport of autoinducer 2 into the cell;gbkey=CDS;product=autoinducer 2-binding protein LsrB;protein_id=WP_000172465.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2348897 2349772 . + . ID=gene2306;Name=SH04_RS11545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11545;old_locus_tag=SH04_11550 NZ_CP010443.1 Protein Homology CDS 2348897 2349772 . + 0 ID=cds2242;Parent=gene2306;Dbxref=Genbank:WP_000774165.1;Name=WP_000774165.1;Note=involved in autoinducer 2 transport and processing;gbkey=CDS;product=autoinducer-2 (AI-2) aldolase;protein_id=WP_000774165.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2349796 2350086 . + . ID=gene2307;Name=SH04_RS11550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11550;old_locus_tag=SH04_11555 NZ_CP010443.1 Protein Homology CDS 2349796 2350086 . + 0 ID=cds2243;Parent=gene2307;Dbxref=Genbank:WP_000558527.1;Name=WP_000558527.1;gbkey=CDS;product=autoinducer 2-degrading protein LsrG;protein_id=WP_000558527.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2350143 2350901 . + . ID=gene2308;Name=SH04_RS11555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11555;old_locus_tag=SH04_11560 NZ_CP010443.1 Protein Homology CDS 2350143 2350901 . + 0 ID=cds2244;Parent=gene2308;Dbxref=Genbank:WP_001286597.1;Name=WP_001286597.1;Note=catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate;gbkey=CDS;product=trans-aconitate 2-methyltransferase;protein_id=WP_001286597.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2350905 2351819 . - . ID=gene2309;Name=SH04_RS11560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11560;old_locus_tag=SH04_11565 NZ_CP010443.1 Protein Homology CDS 2350905 2351819 . - 0 ID=cds2245;Parent=gene2309;Dbxref=Genbank:WP_038432571.1;Name=WP_038432571.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_038432571.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2351769 2351969 . + . ID=gene2310;Name=SH04_RS11565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11565 NZ_CP010443.1 Protein Homology CDS 2351769 2351969 . + 0 ID=cds2246;Parent=gene2310;Dbxref=Genbank:WP_001326603.1;Name=WP_001326603.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001326603.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2352026 2353477 . - . ID=gene2311;Name=SH04_RS11570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11570;old_locus_tag=SH04_11575 NZ_CP010443.1 Protein Homology CDS 2352026 2353477 . - 0 ID=cds2247;Parent=gene2311;Dbxref=Genbank:WP_000854633.1;Name=WP_000854633.1;Note=catalyzes the formation of D-tagaturonate from D-altronate;gbkey=CDS;product=altronate oxidoreductase;protein_id=WP_000854633.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2353704 2354651 . - . ID=gene2312;Name=SH04_RS11575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11575;old_locus_tag=SH04_11580 NZ_CP010443.1 Protein Homology CDS 2353704 2354651 . - 0 ID=cds2248;Parent=gene2312;Dbxref=Genbank:WP_000878968.1;Name=WP_000878968.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_000878968.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2354763 2355122 . - . ID=gene2313;Name=SH04_RS11580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11580;old_locus_tag=SH04_11585 NZ_CP010443.1 Protein Homology CDS 2354763 2355122 . - 0 ID=cds2249;Parent=gene2313;Dbxref=Genbank:WP_001191027.1;Name=WP_001191027.1;gbkey=CDS;product=DUF4186 domain-containing protein;protein_id=WP_001191027.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2355122 2356048 . - . ID=gene2314;Name=SH04_RS11585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11585;old_locus_tag=SH04_11590 NZ_CP010443.1 Protein Homology CDS 2355122 2356048 . - 0 ID=cds2250;Parent=gene2314;Dbxref=Genbank:WP_000257409.1;Name=WP_000257409.1;Note=catalyzes the formation of glutamate from glutamine;gbkey=CDS;product=glutaminase 2;protein_id=WP_000257409.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2356112 2357500 . - . ID=gene2315;Name=SH04_RS11590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11590;old_locus_tag=SH04_11595 NZ_CP010443.1 Protein Homology CDS 2356112 2357500 . - 0 ID=cds2251;Parent=gene2315;Dbxref=Genbank:WP_000156615.1;Name=WP_000156615.1;gbkey=CDS;product=succinate semialdehyde dehydrogenase [NAD(P)+] Sad;protein_id=WP_000156615.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2357601 2358482 . + . ID=gene2316;Name=SH04_RS11595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11595;old_locus_tag=SH04_11600 NZ_CP010443.1 Protein Homology CDS 2357601 2358482 . + 0 ID=cds2252;Parent=gene2316;Dbxref=Genbank:WP_000366501.1;Name=WP_000366501.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000366501.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2358560 2359675 . + . ID=gene2317;Name=SH04_RS11600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11600;old_locus_tag=SH04_11605 NZ_CP010443.1 Protein Homology CDS 2358560 2359675 . + 0 ID=cds2253;Parent=gene2317;Dbxref=Genbank:WP_000258599.1;Name=WP_000258599.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000258599.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2359825 2361015 . + . ID=gene2318;Name=SH04_RS11605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11605;old_locus_tag=SH04_11610 NZ_CP010443.1 Protein Homology CDS 2359825 2361015 . + 0 ID=cds2254;Parent=gene2318;Dbxref=Genbank:WP_000210799.1;Name=WP_000210799.1;gbkey=CDS;product=sugar efflux transporter;protein_id=WP_000210799.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2361040 2361705 . - . ID=gene2319;Name=SH04_RS11610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11610;old_locus_tag=SH04_11615 NZ_CP010443.1 Protein Homology CDS 2361040 2361705 . - 0 ID=cds2255;Parent=gene2319;Dbxref=Genbank:WP_000885033.1;Name=WP_000885033.1;gbkey=CDS;product=membrane protein;protein_id=WP_000885033.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2361917 2362351 . + . ID=gene2320;Name=SH04_RS11615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11615;old_locus_tag=SH04_11620 NZ_CP010443.1 Protein Homology CDS 2361917 2362351 . + 0 ID=cds2256;Parent=gene2320;Dbxref=Genbank:WP_000843414.1;Name=WP_000843414.1;Note=Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes;gbkey=CDS;product=MarR family transcriptional regulator;protein_id=WP_000843414.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2362365 2362754 . + . ID=gene2321;Name=SH04_RS11620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11620;old_locus_tag=SH04_11625 NZ_CP010443.1 Protein Homology CDS 2362365 2362754 . + 0 ID=cds2257;Parent=gene2321;Dbxref=Genbank:WP_001307812.1;Name=WP_001307812.1;Note=transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype%3B also activates sodA%2C zwf and micF;gbkey=CDS;product=MDR efflux pump AcrAB transcriptional activator MarA;protein_id=WP_001307812.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2362786 2363004 . + . ID=gene2322;Name=SH04_RS11625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11625;old_locus_tag=SH04_11630 NZ_CP010443.1 Protein Homology CDS 2362786 2363004 . + 0 ID=cds2258;Parent=gene2322;Dbxref=Genbank:WP_000803657.1;Name=WP_000803657.1;gbkey=CDS;product=multiple antibiotic resistance protein MarB;protein_id=WP_000803657.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2363035 2363934 . - . ID=gene2323;Name=SH04_RS11630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11630;old_locus_tag=SH04_11635 NZ_CP010443.1 Protein Homology CDS 2363035 2363934 . - 0 ID=cds2259;Parent=gene2323;Dbxref=Genbank:WP_000087187.1;Name=WP_000087187.1;gbkey=CDS;product=amino acid metabolite efflux pump;protein_id=WP_000087187.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2364129 2365316 . + . ID=gene2324;Name=SH04_RS11635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11635;old_locus_tag=SH04_11640 NZ_CP010443.1 Protein Homology CDS 2364129 2365316 . + 0 ID=cds2260;Parent=gene2324;Dbxref=Genbank:WP_001054204.1;Name=WP_001054204.1;Note=YdeF%3B uncharacterized member of the major facilitator superfamily (MFS) of transporters;gbkey=CDS;product=transporter;protein_id=WP_001054204.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2365443 2365538 . + . ID=gene2325;Name=SH04_RS11640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11640;old_locus_tag=SH04_11645 NZ_CP010443.1 Protein Homology CDS 2365443 2365538 . + 0 ID=cds2261;Parent=gene2325;Dbxref=Genbank:WP_000901367.1;Name=WP_000901367.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000901367.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2365757 2366647 . - . ID=gene2326;Name=SH04_RS11645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11645;old_locus_tag=SH04_11650 NZ_CP010443.1 Protein Homology CDS 2365757 2366647 . - 0 ID=cds2262;Parent=gene2326;Dbxref=Genbank:WP_000592814.1;Name=WP_000592814.1;Note=required for pgaD induction;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_000592814.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2366902 2367294 . - . ID=gene2327;Name=SH04_RS11650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11650;old_locus_tag=SH04_11655 NZ_CP010443.1 Protein Homology CDS 2366902 2367294 . - 0 ID=cds2263;Parent=gene2327;Dbxref=Genbank:WP_000671737.1;Name=WP_000671737.1;gbkey=CDS;product=hydrogen peroxide resistance protein;protein_id=WP_000671737.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2367570 2368088 . + . ID=gene2328;Name=SH04_RS11655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11655;old_locus_tag=SH04_11660 NZ_CP010443.1 Protein Homology CDS 2367570 2368088 . + 0 ID=cds2264;Parent=gene2328;Dbxref=Genbank:WP_001024746.1;Name=WP_001024746.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001024746.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2368132 2370177 . - . ID=gene2329;Name=SH04_RS11660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11660;old_locus_tag=SH04_11665 NZ_CP010443.1 Protein Homology CDS 2368132 2370177 . - 0 ID=cds2265;Parent=gene2329;Dbxref=Genbank:WP_000210373.1;Name=WP_000210373.1;gbkey=CDS;product=peptidyl-dipeptidase dcp;protein_id=WP_000210373.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2370314 2371060 . + . ID=gene2330;Name=SH04_RS11665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11665;old_locus_tag=SH04_11670 NZ_CP010443.1 Protein Homology CDS 2370314 2371060 . + 0 ID=cds2266;Parent=gene2330;Dbxref=Genbank:WP_000636571.1;Name=WP_000636571.1;Note=NADP(+)-dependent%3B catalyzes the formation of 3-hydroxypropionate from the toxic malonic semialdehyde%2C catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine%3B can also use 3-hydroxybutyrate%2C 3-hydroxy-isobutyrate%2C D-threonine%2C L-allo-threonine%2CD-serine;gbkey=CDS;product=NADP-dependent 3-hydroxy acid dehydrogenase YdfG;protein_id=WP_000636571.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2371149 2371835 . + . ID=gene2331;Name=SH04_RS11670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11670;old_locus_tag=SH04_11675 NZ_CP010443.1 Protein Homology CDS 2371149 2371835 . + 0 ID=cds2267;Parent=gene2331;Dbxref=Genbank:WP_000215549.1;Name=WP_000215549.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000215549.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2372012 2372215 . + . ID=gene2332;Name=SH04_RS11675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11675;old_locus_tag=SH04_11680 NZ_CP010443.1 Protein Homology CDS 2372012 2372215 . + 0 ID=cds2268;Parent=gene2332;Dbxref=Genbank:WP_000214712.1;Name=WP_000214712.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000214712.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2372250 2373710 . - . ID=gene2333;Name=SH04_RS11680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11680;old_locus_tag=SH04_11685 NZ_CP010443.1 Protein Homology CDS 2372250 2373710 . - 0 ID=cds2269;Parent=gene2333;Dbxref=Genbank:WP_000527743.1;Name=WP_000527743.1;gbkey=CDS;product=NAD-dependent D-mannonate oxidoreductase;protein_id=WP_000527743.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2373799 2375082 . - . ID=gene2334;Name=SH04_RS11685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11685;old_locus_tag=SH04_11690 NZ_CP010443.1 Protein Homology CDS 2373799 2375082 . - 0 ID=cds2270;Parent=gene2334;Dbxref=Genbank:WP_000347482.1;Name=WP_000347482.1;gbkey=CDS;product=transporter;protein_id=WP_000347482.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2375330 2377867 . + . ID=id141;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2375869 2376102 . + . ID=gene2335;Name=SH04_RS11690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11690;old_locus_tag=SH04_11695 NZ_CP010443.1 Protein Homology CDS 2375869 2376102 . + 0 ID=cds2271;Parent=gene2335;Dbxref=Genbank:WP_000836770.1;Name=WP_000836770.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_000836770.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2376419 2377009 . + . ID=gene2336;Name=SH04_RS11695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11695;old_locus_tag=SH04_11700 NZ_CP010443.1 Protein Homology CDS 2376419 2377009 . + 0 ID=cds2272;Parent=gene2336;Dbxref=Genbank:WP_000078177.1;Name=WP_000078177.1;gbkey=CDS;product=Qin prophage%3B site-specific recombinase;protein_id=WP_000078177.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2377107 2377682 . - . ID=gene2337;Name=SH04_RS11700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11700;old_locus_tag=SH04_11705 NZ_CP010443.1 Protein Homology CDS 2377107 2377682 . - 0 ID=cds2273;Parent=gene2337;Dbxref=Genbank:WP_000885611.1;Name=WP_000885611.1;gbkey=CDS;product=Tail fiber assembly protein homolog from lambdoid prophage Qin;protein_id=WP_000885611.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2377682 2378644 . - . ID=gene2338;Name=SH04_RS11705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11705;old_locus_tag=SH04_11710 NZ_CP010443.1 Protein Homology CDS 2377682 2378644 . - 0 ID=cds2274;Parent=gene2338;Dbxref=Genbank:WP_001027733.1;Name=WP_001027733.1;gbkey=CDS;product=Side tail fiber protein homolog from lambdoid prophage Qin;protein_id=WP_001027733.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2378067 2378371 . + . ID=id142;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2378595 2379164 . - . ID=gene2339;Name=SH04_RS11710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11710;old_locus_tag=SH04_11715 NZ_CP010443.1 Protein Homology CDS 2378595 2379164 . - 0 ID=cds2275;Parent=gene2339;Dbxref=Genbank:WP_000453612.1;Name=WP_000453612.1;gbkey=CDS;product=protein convertase;protein_id=WP_000453612.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2378636 2379689 . + . ID=id143;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2379553 2379786 . + . ID=gene2340;Name=SH04_RS11715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11715;old_locus_tag=SH04_11720 NZ_CP010443.1 Protein Homology CDS 2379553 2379786 . + 0 ID=cds2276;Parent=gene2340;Dbxref=Genbank:WP_001368374.1;Name=WP_001368374.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001368374.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2379844 2380254 . + . ID=gene2341;Name=SH04_RS11720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11720;old_locus_tag=SH04_11725 NZ_CP010443.1 Protein Homology CDS 2379844 2380254 . + 0 ID=cds2277;Parent=gene2341;Dbxref=Genbank:WP_000373090.1;Name=WP_000373090.1;gbkey=CDS;product=Qin prophage%3B uncharacterized protein;protein_id=WP_000373090.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2380406 2380579 . - . ID=gene2342;Name=SH04_RS11725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11725;old_locus_tag=SH04_11730 NZ_CP010443.1 Protein Homology CDS 2380406 2380579 . - 0 ID=cds2278;Parent=gene2342;Dbxref=Genbank:WP_001019606.1;Name=WP_001019606.1;gbkey=CDS;product=protein GnsB;protein_id=WP_001019606.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2380751 2380927 . - . ID=gene2343;Name=SH04_RS11730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11730;old_locus_tag=SH04_11735 NZ_CP010443.1 Protein Homology CDS 2380751 2380927 . - 0 ID=cds2279;Parent=gene2343;Dbxref=Genbank:WP_012304871.1;Name=WP_012304871.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012304871.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2381252 2381464 . - . ID=gene2344;Name=SH04_RS11735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11735;old_locus_tag=SH04_11740 NZ_CP010443.1 Protein Homology CDS 2381252 2381464 . - 0 ID=cds2280;Parent=gene2344;Dbxref=Genbank:WP_000066495.1;Name=WP_000066495.1;gbkey=CDS;product=cold-shock protein CspI;protein_id=WP_000066495.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2381827 2382324 . - . ID=gene2345;Name=SH04_RS11740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11740;old_locus_tag=SH04_11745 NZ_CP010443.1 Protein Homology CDS 2381827 2382324 . - 0 ID=cds2281;Parent=gene2345;Dbxref=Genbank:WP_001071769.1;Name=WP_001071769.1;gbkey=CDS;product=Rz-like protein%2C Qin prophage;protein_id=WP_001071769.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2382321 2382854 . - . ID=gene2346;Name=SH04_RS11745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11745;old_locus_tag=SH04_11750 NZ_CP010443.1 Protein Homology CDS 2382321 2382854 . - 0 ID=cds2282;Parent=gene2346;Dbxref=Genbank:WP_001092971.1;Name=WP_001092971.1;gbkey=CDS;product=lysozyme from lambdoid prophage Qin;protein_id=WP_001092971.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2382851 2383162 . - . ID=gene2347;Name=SH04_RS11750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11750;old_locus_tag=SH04_11755 NZ_CP010443.1 Protein Homology CDS 2382851 2383162 . - 0 ID=cds2283;Parent=gene2347;Dbxref=Genbank:WP_000189916.1;Name=WP_000189916.1;gbkey=CDS;product=Qin prophage%3B uncharacterized protein;protein_id=WP_000189916.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2383167 2383382 . - . ID=gene2348;Name=SH04_RS11755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11755;old_locus_tag=SH04_11760 NZ_CP010443.1 Protein Homology CDS 2383167 2383382 . - 0 ID=cds2284;Parent=gene2348;Dbxref=Genbank:WP_000839590.1;Name=WP_000839590.1;gbkey=CDS;product=Lysis protein S homolog from lambdoid prophage Qin;protein_id=WP_000839590.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2384136 2384351 . - . ID=gene2349;Name=SH04_RS11760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11760;old_locus_tag=SH04_11765 NZ_CP010443.1 Protein Homology CDS 2384136 2384351 . - 0 ID=cds2285;Parent=gene2349;Dbxref=Genbank:WP_000066484.1;Name=WP_000066484.1;gbkey=CDS;product=cold-shock protein CspB;protein_id=WP_000066484.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2384652 2384864 . + . ID=gene2350;Name=SH04_RS11765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11765;old_locus_tag=SH04_11770 NZ_CP010443.1 Protein Homology CDS 2384652 2384864 . + 0 ID=cds2286;Parent=gene2350;Dbxref=Genbank:WP_000087756.1;Name=WP_000087756.1;gbkey=CDS;product=cold-shock protein CspF;protein_id=WP_000087756.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2385286 2386038 . - . ID=gene2351;Name=SH04_RS11770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11770;old_locus_tag=SH04_11775 NZ_CP010443.1 Protein Homology CDS 2385286 2386038 . - 0 ID=cds2287;Parent=gene2351;Dbxref=Genbank:WP_001047135.1;Name=WP_001047135.1;gbkey=CDS;product=Antitermination protein Q homolog from lambdoid prophage Qin;protein_id=WP_001047135.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2386052 2387101 . - . ID=gene2352;Name=SH04_RS11775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11775;old_locus_tag=SH04_11780 NZ_CP010443.1 Protein Homology CDS 2386052 2387101 . - 0 ID=cds2288;Parent=gene2352;Dbxref=Genbank:WP_001265198.1;Name=WP_001265198.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001265198.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2387103 2387381 . - . ID=gene2353;Name=SH04_RS11780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11780;old_locus_tag=SH04_11785 NZ_CP010443.1 Protein Homology CDS 2387103 2387381 . - 0 ID=cds2289;Parent=gene2353;Dbxref=Genbank:WP_012304870.1;Name=WP_012304870.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012304870.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2387448 2387699 . - . ID=gene2354;Name=SH04_RS11785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11785;old_locus_tag=SH04_11790 NZ_CP010443.1 Protein Homology CDS 2387448 2387699 . - 0 ID=cds2290;Parent=gene2354;Dbxref=Genbank:WP_000980994.1;Name=WP_000980994.1;gbkey=CDS;product=Qin prophage%3B uncharacterized protein;protein_id=WP_000980994.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2387916 2388071 . - . ID=gene2355;Name=SH04_RS11790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11790;old_locus_tag=SH04_11795 NZ_CP010443.1 Protein Homology CDS 2387916 2388071 . - 0 ID=cds2291;Parent=gene2355;Dbxref=Genbank:WP_000813254.1;Name=WP_000813254.1;gbkey=CDS;product=protein HokD;protein_id=WP_000813254.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2388143 2388430 . - . ID=gene2356;Name=SH04_RS11795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11795;old_locus_tag=SH04_11800 NZ_CP010443.1 Protein Homology CDS 2388143 2388430 . - 0 ID=cds2292;Parent=gene2356;Dbxref=Genbank:WP_000323025.1;Name=WP_000323025.1;gbkey=CDS;product=mRNA interferase RelE;protein_id=WP_000323025.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2388430 2388669 . - . ID=gene2357;Name=SH04_RS11800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11800;old_locus_tag=SH04_11805 NZ_CP010443.1 Protein Homology CDS 2388430 2388669 . - 0 ID=cds2293;Parent=gene2357;Dbxref=Genbank:WP_000534858.1;Name=WP_000534858.1;Note=Qin prophage%3B bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor;gbkey=CDS;product=antitoxin RelB;protein_id=WP_000534858.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2389202 2389534 . + . ID=gene2358;Name=SH04_RS11805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11805;old_locus_tag=SH04_11810 NZ_CP010443.1 Protein Homology CDS 2389202 2389534 . + 0 ID=cds2294;Parent=gene2358;Dbxref=Genbank:WP_001301033.1;Name=WP_001301033.1;gbkey=CDS;product=protein FlxA;protein_id=WP_001301033.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2390136 2390433 . - . ID=gene2359;Name=SH04_RS11810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS11810;partial=true;pseudo=true;start_range=.,2390136 NZ_CP010443.1 Protein Homology CDS 2390136 2390433 . - 0 ID=cds2295;Parent=gene2359;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2390136;transl_table=11 NZ_CP010443.1 RefSeq gene 2390417 2390647 . - . ID=gene2360;Name=SH04_RS11815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11815;old_locus_tag=SH04_11820 NZ_CP010443.1 Protein Homology CDS 2390417 2390647 . - 0 ID=cds2296;Parent=gene2360;Dbxref=Genbank:WP_000920568.1;Name=WP_000920568.1;gbkey=CDS;product=repressor protein of division inhibition gene dicB;protein_id=WP_000920568.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2390731 2391138 . + . ID=gene2361;Name=SH04_RS11820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11820;old_locus_tag=SH04_11825 NZ_CP010443.1 Protein Homology CDS 2390731 2391138 . + 0 ID=cds2297;Parent=gene2361;Dbxref=Genbank:WP_000448564.1;Name=WP_000448564.1;Note=The transcriptional repressor of DicA (divison cell) has a hypothetical DNA binding domain. It represses the transcription of dicB and dicC%2C but its specific role in cellular replication and mode of action are still unknown.;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000448564.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2391305 2391460 . + . ID=gene2362;Name=SH04_RS11825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11825;old_locus_tag=SH04_11830 NZ_CP010443.1 Protein Homology CDS 2391305 2391460 . + 0 ID=cds2298;Parent=gene2362;Dbxref=Genbank:WP_000379575.1;Name=WP_000379575.1;gbkey=CDS;product=Qin prophage%3B uncharacterized protein;protein_id=WP_000379575.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2391620 2391838 . + . ID=gene2363;Name=SH04_RS11830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11830;old_locus_tag=SH04_11835 NZ_CP010443.1 Protein Homology CDS 2391620 2391838 . + 0 ID=cds2299;Parent=gene2363;Dbxref=Genbank:WP_001171942.1;Name=WP_001171942.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001171942.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2391842 2392135 . - . ID=gene2364;Name=SH04_RS11835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11835;old_locus_tag=SH04_11840 NZ_CP010443.1 Protein Homology CDS 2391842 2392135 . - 0 ID=cds2300;Parent=gene2364;Dbxref=Genbank:WP_032243558.1;Name=WP_032243558.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032243558.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2392406 2392594 . + . ID=gene2365;Name=SH04_RS11840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11840;old_locus_tag=SH04_11845 NZ_CP010443.1 Protein Homology CDS 2392406 2392594 . + 0 ID=cds2301;Parent=gene2365;Dbxref=Genbank:WP_000854559.1;Name=WP_000854559.1;gbkey=CDS;product=division inhibition protein DicB;protein_id=WP_000854559.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2392591 2392782 . + . ID=gene2366;Name=SH04_RS11845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11845;old_locus_tag=SH04_11850 NZ_CP010443.1 Protein Homology CDS 2392591 2392782 . + 0 ID=cds2302;Parent=gene2366;Dbxref=Genbank:WP_038432577.1;Name=WP_038432577.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_038432577.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2393094 2393405 . - . ID=gene2367;Name=SH04_RS11850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11850;old_locus_tag=SH04_11855 NZ_CP010443.1 Protein Homology CDS 2393094 2393405 . - 0 ID=cds2303;Parent=gene2367;Dbxref=Genbank:WP_024181921.1;Name=WP_024181921.1;gbkey=CDS;product=cell surface protein;protein_id=WP_024181921.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2393609 2394334 . + . ID=gene2368;Name=SH04_RS11855;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS11855;partial=true;pseudo=true;start_range=.,2393609 NZ_CP010443.1 Protein Homology CDS 2393609 2394334 . + 0 ID=cds2304;Parent=gene2368;gbkey=CDS;partial=true;product=transposase;pseudo=true;start_range=.,2393609;transl_except=(pos:2393627..2393629%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2393640 2394346 . + . ID=id144;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2394309 2395505 . + . ID=gene2369;Name=SH04_RS11860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11860;old_locus_tag=SH04_11865 NZ_CP010443.1 Protein Homology CDS 2394309 2395505 . + 0 ID=cds2305;Parent=gene2369;Dbxref=Genbank:WP_000627182.1;Name=WP_000627182.1;gbkey=CDS;product=integrase;protein_id=WP_000627182.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2395693 2396712 . - . ID=gene2370;Name=SH04_RS11865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11865;old_locus_tag=SH04_11870 NZ_CP010443.1 Protein Homology CDS 2395693 2396712 . - 0 ID=cds2306;Parent=gene2370;Dbxref=Genbank:WP_000836066.1;Name=WP_000836066.1;gbkey=CDS;product=starvation-sensing protein RspB;protein_id=WP_000836066.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2396724 2397938 . - . ID=gene2371;Name=SH04_RS11870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11870;old_locus_tag=SH04_11875 NZ_CP010443.1 Protein Homology CDS 2396724 2397938 . - 0 ID=cds2307;Parent=gene2371;Dbxref=Genbank:WP_001295394.1;Name=WP_001295394.1;Note=starvation-sensing protein%3B maybe involved in homoserine lactone degradation;gbkey=CDS;product=starvation-sensing protein RspA;protein_id=WP_001295394.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2398144 2398470 . - . ID=gene2372;Name=SH04_RS11875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11875;old_locus_tag=SH04_11880 NZ_CP010443.1 Protein Homology CDS 2398144 2398470 . - 0 ID=cds2308;Parent=gene2372;Dbxref=Genbank:WP_000598292.1;Name=WP_000598292.1;gbkey=CDS;product=membrane protein;protein_id=WP_000598292.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2398605 2398946 . + . ID=gene2373;Name=SH04_RS11880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11880;old_locus_tag=SH04_11885 NZ_CP010443.1 Protein Homology CDS 2398605 2398946 . + 0 ID=cds2309;Parent=gene2373;Dbxref=Genbank:WP_000705211.1;Name=WP_000705211.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000705211.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2398981 2399541 . + . ID=gene2374;Name=SH04_RS11885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11885;old_locus_tag=SH04_11890 NZ_CP010443.1 Protein Homology CDS 2398981 2399541 . + 0 ID=cds2310;Parent=gene2374;Dbxref=Genbank:WP_001138581.1;Name=WP_001138581.1;Note=catalyzes the formation of N(1)- and N(8)-acetylspermidine from spermidine;gbkey=CDS;product=spermidine N(1)-acetyltransferase;protein_id=WP_001138581.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2399544 2400290 . - . ID=gene2375;Name=SH04_RS11890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11890;old_locus_tag=SH04_11895 NZ_CP010443.1 Protein Homology CDS 2399544 2400290 . - 0 ID=cds2311;Parent=gene2375;Dbxref=Genbank:WP_000571984.1;Name=WP_000571984.1;gbkey=CDS;product=lipoprotein;protein_id=WP_000571984.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2400362 2400667 . + . ID=gene2376;Name=SH04_RS11895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11895;old_locus_tag=SH04_11900 NZ_CP010443.1 Protein Homology CDS 2400362 2400667 . + 0 ID=cds2312;Parent=gene2376;Dbxref=Genbank:WP_001300836.1;Name=WP_001300836.1;gbkey=CDS;product=DUF1161 domain-containing protein;protein_id=WP_001300836.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2400866 2403292 . + . ID=gene2377;Name=SH04_RS11900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11900;old_locus_tag=SH04_11905 NZ_CP010443.1 Protein Homology CDS 2400866 2403292 . + 0 ID=cds2313;Parent=gene2377;Dbxref=Genbank:WP_000041675.1;Name=WP_000041675.1;gbkey=CDS;product=selenate reductase periplasmic;protein_id=WP_000041675.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2403380 2405776 . + . ID=gene2378;Name=SH04_RS11905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11905;old_locus_tag=SH04_11910 NZ_CP010443.1 Protein Homology CDS 2403380 2405776 . + 0 ID=cds2314;Parent=gene2378;Dbxref=Genbank:WP_001299397.1;Name=WP_001299397.1;gbkey=CDS;product=dimethyl sulfoxide reductase subunit A;protein_id=WP_001299397.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2405787 2406404 . + . ID=gene2379;Name=SH04_RS11910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11910;old_locus_tag=SH04_11915 NZ_CP010443.1 Protein Homology CDS 2405787 2406404 . + 0 ID=cds2315;Parent=gene2379;Dbxref=Genbank:WP_000213028.1;Name=WP_000213028.1;Note=oxidoreductase%2C Fe-S subunit%3B terminal electron transfer protein for the reduction of DMSO;gbkey=CDS;product=dimethyl sulfoxide reductase;protein_id=WP_000213028.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2406406 2407260 . + . ID=gene2380;Name=SH04_RS11915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11915;old_locus_tag=SH04_11920 NZ_CP010443.1 Protein Homology CDS 2406406 2407260 . + 0 ID=cds2316;Parent=gene2380;Dbxref=Genbank:WP_000526503.1;Name=WP_000526503.1;gbkey=CDS;product=dimethyl sulfoxide reductase;protein_id=WP_000526503.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2407303 2407917 . + . ID=gene2381;Name=SH04_RS11920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11920;old_locus_tag=SH04_11925 NZ_CP010443.1 Protein Homology CDS 2407303 2407917 . + 0 ID=cds2317;Parent=gene2381;Dbxref=Genbank:WP_000148710.1;Name=WP_000148710.1;Note=binds to the twin-arginine signal peptides of certain proteins%2C including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane;gbkey=CDS;product=Tat proofreading chaperone DmsD;protein_id=WP_000148710.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2408112 2409368 . + . ID=gene2382;Name=SH04_RS11925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11925;old_locus_tag=SH04_11930 NZ_CP010443.1 Protein Homology CDS 2408112 2409368 . + 0 ID=cds2318;Parent=gene2382;Dbxref=Genbank:WP_001350514.1;Name=WP_001350514.1;gbkey=CDS;product=voltage-gated ClC-type chloride channel ClcB;protein_id=WP_001350514.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2409321 2410016 . - . ID=gene2383;Name=SH04_RS11930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11930;old_locus_tag=SH04_11935 NZ_CP010443.1 Protein Homology CDS 2409321 2410016 . - 0 ID=cds2319;Parent=gene2383;Dbxref=Genbank:WP_000919231.1;Name=WP_000919231.1;Note=DTB synthetase%3B dethiobiotin synthase%3B involved in production of dethiobiotin from ATP and 7%2C8-diaminononanoate and carbon dioxide%3B contains magnesium;gbkey=CDS;product=ATP-dependent dethiobiotin synthetase BioD 2;protein_id=WP_000919231.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2410141 2411361 . - . ID=gene2384;Name=SH04_RS11935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11935;old_locus_tag=SH04_11940 NZ_CP010443.1 Protein Homology CDS 2410141 2411361 . - 0 ID=cds2320;Parent=gene2384;Dbxref=Genbank:WP_000225262.1;Name=WP_000225262.1;Note=mlc%2C controls the expression of genes involved in the phosphotransferase and phosphoenolpyruvate systems%2C regulates genes involved in the uptake of sugars;gbkey=CDS;product=protein mlc;protein_id=WP_000225262.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2411496 2412389 . - . ID=gene2385;Name=SH04_RS11940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11940;old_locus_tag=SH04_11945 NZ_CP010443.1 Protein Homology CDS 2411496 2412389 . - 0 ID=cds2321;Parent=gene2385;Dbxref=Genbank:WP_001019525.1;Name=WP_001019525.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_001019525.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2412496 2413749 . + . ID=gene2386;Name=SH04_RS11945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11945;old_locus_tag=SH04_11950 NZ_CP010443.1 Protein Homology CDS 2412496 2413749 . + 0 ID=cds2322;Parent=gene2386;Dbxref=Genbank:WP_000091840.1;Name=WP_000091840.1;gbkey=CDS;product=transporter;protein_id=WP_000091840.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2414146 2414481 . + . ID=gene2387;Name=SH04_RS11950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11950;old_locus_tag=SH04_11955 NZ_CP010443.1 Protein Homology CDS 2414146 2414481 . + 0 ID=cds2323;Parent=gene2387;Dbxref=Genbank:WP_038432580.1;Name=WP_038432580.1;Note=required for growth and survival under moderately acid conditions;gbkey=CDS;product=hypothetical protein;protein_id=WP_038432580.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2414574 2414657 . + . ID=gene2388;Name=SH04_RS11955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11955;old_locus_tag=SH04_11960 NZ_CP010443.1 Protein Homology CDS 2414574 2414657 . + 0 ID=cds2324;Parent=gene2388;Dbxref=Genbank:WP_000233093.1;Name=WP_000233093.1;gbkey=CDS;product=stationary phase-induced protein;protein_id=WP_000233093.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2414757 2415578 . + . ID=gene2389;Name=SH04_RS11960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11960;old_locus_tag=SH04_11965 NZ_CP010443.1 Protein Homology CDS 2414757 2415578 . + 0 ID=cds2325;Parent=gene2389;Dbxref=Genbank:WP_001260865.1;Name=WP_001260865.1;gbkey=CDS;product=peptidase;protein_id=WP_001260865.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2415617 2415946 . - . ID=gene2390;Name=SH04_RS11965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11965;old_locus_tag=SH04_11970 NZ_CP010443.1 Protein Homology CDS 2415617 2415946 . - 0 ID=cds2326;Parent=gene2390;Dbxref=Genbank:WP_000046661.1;Name=WP_000046661.1;Note=with MdtJ is involved in resistance to deoxycholate%2C nalidixic acid%2C fosfomycin%2C and SDS;gbkey=CDS;product=spermidine export protein MdtI;protein_id=WP_000046661.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2415933 2416298 . - . ID=gene2391;Name=SH04_RS11970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11970;old_locus_tag=SH04_11975 NZ_CP010443.1 Protein Homology CDS 2415933 2416298 . - 0 ID=cds2327;Parent=gene2391;Dbxref=Genbank:WP_000276149.1;Name=WP_000276149.1;Note=with MdtI is involved in resistance to deoxycholate%2C nalidixic acid%2C fosfomycin%2C and SDS;gbkey=CDS;product=spermidine export protein MdtJ;protein_id=WP_000276149.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2416710 2417744 . + . ID=gene2392;Name=tqsA;gbkey=Gene;gene=tqsA;gene_biotype=protein_coding;gene_synonym=ydgG;locus_tag=SH04_RS11975;old_locus_tag=SH04_11980 NZ_CP010443.1 Protein Homology CDS 2416710 2417744 . + 0 ID=cds2328;Parent=gene2392;Dbxref=Genbank:WP_001118241.1;Name=WP_001118241.1;Note=transport of quorum-sensing signal%3B mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes;gbkey=CDS;gene=tqsA;product=AI-2 transporter TqsA;protein_id=WP_001118241.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2417769 2419157 . - . ID=gene2393;Name=pntB;gbkey=Gene;gene=pntB;gene_biotype=protein_coding;locus_tag=SH04_RS11980;old_locus_tag=SH04_11985 NZ_CP010443.1 Protein Homology CDS 2417769 2419157 . - 0 ID=cds2329;Parent=gene2393;Dbxref=Genbank:WP_000014036.1;Name=WP_000014036.1;Note=catalyzes reversible transfer of hydride ion equivalent between NAD and NADP%3B membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane%3B forms a tetramer composed of two alpha and 2 beta subunits%3B AB-stereospecific enzyme;gbkey=CDS;gene=pntB;product=NAD(P) transhydrogenase subunit beta;protein_id=WP_000014036.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2419168 2420700 . - . ID=gene2394;Name=pntA;gbkey=Gene;gene=pntA;gene_biotype=protein_coding;locus_tag=SH04_RS11985;old_locus_tag=SH04_11990 NZ_CP010443.1 Protein Homology CDS 2419168 2420700 . - 0 ID=cds2330;Parent=gene2394;Dbxref=Genbank:WP_001300486.1;Name=WP_001300486.1;Note=forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane%3B involved in catalyzing transfer of hydride ion equivalents between NAD and NADP%3B stereospecific (AB-specific)%3B functions as a proton pump by translocating protons from cytoplasm to periplasm;gbkey=CDS;gene=pntA;product=NAD(P) transhydrogenase subunit alpha;protein_id=WP_001300486.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2421224 2422168 . + . ID=gene2395;Name=SH04_RS11990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11990;old_locus_tag=SH04_11995 NZ_CP010443.1 Protein Homology CDS 2421224 2422168 . + 0 ID=cds2331;Parent=gene2395;Dbxref=Genbank:WP_000769303.1;Name=WP_000769303.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000769303.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2422354 2423736 . + . ID=gene2396;Name=SH04_RS11995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS11995;old_locus_tag=SH04_12000 NZ_CP010443.1 Protein Homology CDS 2422354 2423736 . + 0 ID=cds2332;Parent=gene2396;Dbxref=Genbank:WP_000412379.1;Name=WP_000412379.1;gbkey=CDS;product=arginine/ornithine antiporter transporter;protein_id=WP_000412379.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2423773 2424495 . + . ID=gene2397;Name=SH04_RS12000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12000;old_locus_tag=SH04_12005 NZ_CP010443.1 Protein Homology CDS 2423773 2424495 . + 0 ID=cds2333;Parent=gene2397;Dbxref=Genbank:WP_000520804.1;Name=WP_000520804.1;gbkey=CDS;product=dihydrofolate reductase FolM;protein_id=WP_000520804.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2424492 2424827 . - . ID=gene2398;Name=SH04_RS12005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12005;old_locus_tag=SH04_12010 NZ_CP010443.1 Protein Homology CDS 2424492 2424827 . - 0 ID=cds2334;Parent=gene2398;Dbxref=Genbank:WP_038432582.1;Name=WP_038432582.1;gbkey=CDS;product=membrane protein;protein_id=WP_038432582.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2424956 2425675 . + . ID=gene2399;Name=SH04_RS12010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12010;old_locus_tag=SH04_12015 NZ_CP010443.1 Protein Homology CDS 2424956 2425675 . + 0 ID=cds2335;Parent=gene2399;Dbxref=Genbank:WP_001092508.1;Name=WP_001092508.1;Note=response regulator in two-component regulatory system with RstB;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001092508.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2425679 2426980 . + . ID=gene2400;Name=SH04_RS12015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12015;old_locus_tag=SH04_12020 NZ_CP010443.1 Protein Homology CDS 2425679 2426980 . + 0 ID=cds2336;Parent=gene2400;Dbxref=Genbank:WP_000732512.1;Name=WP_000732512.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_000732512.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2427056 2427985 . + . ID=gene2401;Name=SH04_RS12020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12020;old_locus_tag=SH04_12025 NZ_CP010443.1 Protein Homology CDS 2427056 2427985 . + 0 ID=cds2337;Parent=gene2401;Dbxref=Genbank:WP_000135181.1;Name=WP_000135181.1;Note=binds to DNA replication terminator sequences to prevent passage of replication forks;gbkey=CDS;product=DNA replication terminus site-binding protein;protein_id=WP_000135181.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2427982 2429385 . - . ID=gene2402;Name=fumC;gbkey=Gene;gene=fumC;gene_biotype=protein_coding;locus_tag=SH04_RS12025;old_locus_tag=SH04_12030 NZ_CP010443.1 Protein Homology CDS 2427982 2429385 . - 0 ID=cds2338;Parent=gene2402;Dbxref=Genbank:WP_001099085.1;Name=WP_001099085.1;Note=class II family (does not require metal)%3B tetrameric enzyme%3B fumarase C%3B reversibly converts (S)-malate to fumarate and water%3B functions in the TCA cycle;gbkey=CDS;gene=fumC;product=fumarate hydratase class II;protein_id=WP_001099085.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2429528 2431174 . - . ID=gene2403;Name=SH04_RS12030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12030;old_locus_tag=SH04_12035 NZ_CP010443.1 Protein Homology CDS 2429528 2431174 . - 0 ID=cds2339;Parent=gene2403;Dbxref=Genbank:WP_000066639.1;Name=WP_000066639.1;Note=catalyzes the formation of malate from fumerate;gbkey=CDS;product=fumarate hydratase class I%2C aerobic;protein_id=WP_000066639.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2431373 2432548 . + . ID=gene2404;Name=SH04_RS12035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12035;old_locus_tag=SH04_12040 NZ_CP010443.1 Protein Homology CDS 2431373 2432548 . + 0 ID=cds2340;Parent=gene2404;Dbxref=Genbank:WP_001170664.1;Name=WP_001170664.1;Note=catalyzes the formation of of fructose 6-phosphate from mannose 6-phosphate;gbkey=CDS;product=mannose-6-phosphate isomerase;protein_id=WP_001170664.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2432649 2434157 . + . ID=gene2405;Name=SH04_RS12040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12040;old_locus_tag=SH04_12045 NZ_CP010443.1 Protein Homology CDS 2432649 2434157 . + 0 ID=cds2341;Parent=gene2405;Dbxref=Genbank:WP_001043339.1;Name=WP_001043339.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001043339.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2434383 2435648 . - . ID=gene2406;Name=SH04_RS12045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12045;old_locus_tag=SH04_12050 NZ_CP010443.1 Protein Homology CDS 2434383 2435648 . - 0 ID=cds2342;Parent=gene2406;Dbxref=Genbank:WP_001227023.1;Name=WP_001227023.1;gbkey=CDS;product=porin;protein_id=WP_001227023.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2435687 2437060 . - . ID=gene2407;Name=SH04_RS12050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12050;old_locus_tag=SH04_12055 NZ_CP010443.1 Protein Homology CDS 2435687 2437060 . - 0 ID=cds2343;Parent=gene2407;Dbxref=Genbank:WP_001075849.1;Name=WP_001075849.1;gbkey=CDS;product=glucuronide carrier protein;protein_id=WP_001075849.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2437057 2438868 . - . ID=gene2408;Name=SH04_RS12055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12055;old_locus_tag=SH04_12060 NZ_CP010443.1 Protein Homology CDS 2437057 2438868 . - 0 ID=cds2344;Parent=gene2408;Dbxref=Genbank:WP_000945878.1;Name=WP_000945878.1;gbkey=CDS;product=beta-glucuronidase;protein_id=WP_000945878.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2439259 2439849 . - . ID=gene2409;Name=SH04_RS12060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12060;old_locus_tag=SH04_12065 NZ_CP010443.1 Protein Homology CDS 2439259 2439849 . - 0 ID=cds2345;Parent=gene2409;Dbxref=Genbank:WP_000969092.1;Name=WP_000969092.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000969092.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2440070 2440837 . - . ID=gene2410;Name=SH04_RS12065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12065;old_locus_tag=SH04_12070 NZ_CP010443.1 Protein Homology CDS 2440070 2440837 . - 0 ID=cds2346;Parent=gene2410;Dbxref=Genbank:WP_000483353.1;Name=WP_000483353.1;Note=Acts on the hydroxyl group at position 7 of the steroid frame;gbkey=CDS;product=7-alpha-hydroxysteroid dehydrogenase;protein_id=WP_000483353.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2440949 2441977 . - . ID=gene2411;Name=SH04_RS12070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12070;old_locus_tag=SH04_12075 NZ_CP010443.1 Protein Homology CDS 2440949 2441977 . - 0 ID=cds2347;Parent=gene2411;Dbxref=Genbank:WP_000179510.1;Name=WP_000179510.1;Note=regulates malXY which are involved in maltose-glucose transport;gbkey=CDS;product=maltose regulon regulatory protein MalI;protein_id=WP_000179510.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2442152 2443744 . + . ID=gene2412;Name=SH04_RS12075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12075;old_locus_tag=SH04_12080 NZ_CP010443.1 Protein Homology CDS 2442152 2443744 . + 0 ID=cds2348;Parent=gene2412;Dbxref=Genbank:WP_000125583.1;Name=WP_000125583.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%3B catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane%3B component IIB catalyzes the phosphorylation of the sugar molecule%3B IIC forms the translocation channel and contains the substrate specific binding site;gbkey=CDS;product=PTS maltose- and glucose EIICB component;protein_id=WP_000125583.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2443754 2444926 . + . ID=gene2413;Name=SH04_RS12080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12080;old_locus_tag=SH04_12085 NZ_CP010443.1 Protein Homology CDS 2443754 2444926 . + 0 ID=cds2349;Parent=gene2413;Dbxref=Genbank:WP_000459379.1;Name=WP_000459379.1;Note=catalyzes the formation of homocysteine and pyruvate from cystathionine%3B also acts a a negative regulator for the mal regulon but interacting with the transcriptional activator MalT;gbkey=CDS;product=protein MalY;protein_id=WP_000459379.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2445030 2446031 . + . ID=gene2414;Name=SH04_RS12085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12085;old_locus_tag=SH04_12090 NZ_CP010443.1 Protein Homology CDS 2445030 2446031 . + 0 ID=cds2350;Parent=gene2414;Dbxref=Genbank:WP_000567490.1;Name=WP_000567490.1;gbkey=CDS;product=adenosine deaminase;protein_id=WP_000567490.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2446065 2447105 . - . ID=gene2415;Name=SH04_RS12090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12090;old_locus_tag=SH04_12095 NZ_CP010443.1 Protein Homology CDS 2446065 2447105 . - 0 ID=cds2351;Parent=gene2415;Dbxref=Genbank:WP_001282550.1;Name=WP_001282550.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_001282550.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2447348 2447473 . + . ID=gene2416;Name=SH04_RS12095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12095;old_locus_tag=SH04_12100 NZ_CP010443.1 Protein Homology CDS 2447348 2447473 . + 0 ID=cds2352;Parent=gene2416;Dbxref=Genbank:WP_001300888.1;Name=WP_001300888.1;gbkey=CDS;product=divisome-associated membrane protein Blr;protein_id=WP_001300888.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2447746 2447961 . + . ID=gene2417;Name=SH04_RS12100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12100;old_locus_tag=SH04_12105 NZ_CP010443.1 Protein Homology CDS 2447746 2447961 . + 0 ID=cds2353;Parent=gene2417;Dbxref=Genbank:WP_000217950.1;Name=WP_000217950.1;Note=YdgT%3B in E. coli%2C when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC%3B seems to play a role in optimizing the activity of oriC%3B non-essential%3B Hha protein paralog%3B in an hha mutant background%2C cnu is overexpressed and can compensate hha-induced phenotypes;gbkey=CDS;product=nucleoid-associated protein;protein_id=WP_000217950.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2448047 2448487 . + . ID=gene2418;Name=SH04_RS12105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12105;old_locus_tag=SH04_12110 NZ_CP010443.1 Protein Homology CDS 2448047 2448487 . + 0 ID=cds2354;Parent=gene2418;Dbxref=Genbank:WP_001310854.1;Name=WP_001310854.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001310854.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2448564 2449145 . + . ID=gene2419;Name=SH04_RS12110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12110;old_locus_tag=SH04_12115 NZ_CP010443.1 Protein Homology CDS 2448564 2449145 . + 0 ID=cds2355;Parent=gene2419;Dbxref=Genbank:WP_000133193.1;Name=WP_000133193.1;gbkey=CDS;product=electron transport complex subunit RsxA;protein_id=WP_000133193.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2449145 2449723 . + . ID=gene2420;Name=SH04_RS12115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12115;old_locus_tag=SH04_12120 NZ_CP010443.1 Protein Homology CDS 2449145 2449723 . + 0 ID=cds2356;Parent=gene2420;Dbxref=Genbank:WP_000991805.1;Name=WP_000991805.1;Note=part of membrane-bound complex thought to be involved in electron transport to nitrogen;gbkey=CDS;product=electron transport complex subunit RsxB;protein_id=WP_000991805.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2449716 2451938 . + . ID=gene2421;Name=SH04_RS12120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12120;old_locus_tag=SH04_12125 NZ_CP010443.1 Protein Homology CDS 2449716 2451938 . + 0 ID=cds2357;Parent=gene2421;Dbxref=Genbank:WP_000915778.1;Name=WP_000915778.1;Note=part of membrane-bound complex thought to be involved in electron transport to nitrogen;gbkey=CDS;product=electron transporter RsxC;protein_id=WP_000915778.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2451939 2452997 . + . ID=gene2422;Name=rnfD;gbkey=Gene;gene=rnfD;gene_biotype=protein_coding;locus_tag=SH04_RS12125;old_locus_tag=SH04_12130 NZ_CP010443.1 Protein Homology CDS 2451939 2452997 . + 0 ID=cds2358;Parent=gene2422;Dbxref=Genbank:WP_000231927.1;Name=WP_000231927.1;Note=RnfD%3B RsxD%3B required for nitrogen fixation in Rhodobacter capsulatus%3B part of a membrane-bound complex thought to be involved in electron transport to nitrogenase%3B in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents;gbkey=CDS;gene=rnfD;product=electron transport complex subunit RsxD;protein_id=WP_000231927.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2453001 2453621 . + . ID=gene2423;Name=SH04_RS12130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12130;old_locus_tag=SH04_12135 NZ_CP010443.1 Protein Homology CDS 2453001 2453621 . + 0 ID=cds2359;Parent=gene2423;Dbxref=Genbank:WP_000920784.1;Name=WP_000920784.1;Note=part of membrane-bound complex hought to be involved in electron transport to nitrogen;gbkey=CDS;product=electron transport complex subunit RsxG;protein_id=WP_000920784.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2453625 2454320 . + . ID=gene2424;Name=SH04_RS12135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12135;old_locus_tag=SH04_12140 NZ_CP010443.1 Protein Homology CDS 2453625 2454320 . + 0 ID=cds2360;Parent=gene2424;Dbxref=Genbank:WP_001289652.1;Name=WP_001289652.1;gbkey=CDS;product=electron transporter RsxE;protein_id=WP_001289652.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2454320 2454955 . + . ID=gene2425;Name=SH04_RS12140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12140;old_locus_tag=SH04_12145 NZ_CP010443.1 Protein Homology CDS 2454320 2454955 . + 0 ID=cds2361;Parent=gene2425;Dbxref=Genbank:WP_001030339.1;Name=WP_001030339.1;Note=DNA-(apurinic or apyrimidinic site) lyase%3B has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity%3B removed damaged DNA at cytosines%2C thymines and guanines;gbkey=CDS;product=endonuclease III;protein_id=WP_001030339.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2455083 2455283 . + . ID=gene2426;Name=SH04_RS12145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12145;old_locus_tag=SH04_12150 NZ_CP010443.1 Protein Homology CDS 2455083 2455283 . + 0 ID=cds2362;Parent=gene2426;Dbxref=Genbank:WP_001197983.1;Name=WP_001197983.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001197983.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2455566 2457068 . + . ID=gene2427;Name=tppB;gbkey=Gene;gene=tppB;gene_biotype=protein_coding;gene_synonym=ydgR;locus_tag=SH04_RS12150;old_locus_tag=SH04_12155 NZ_CP010443.1 Protein Homology CDS 2455566 2457068 . + 0 ID=cds2363;Parent=gene2427;Dbxref=Genbank:WP_000100932.1;Name=WP_000100932.1;Note=mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium%3B member of proton-dependent oligopeptide transport (POT) system family%3B in Escherichia coli this gene is regulated by OmpR although not via osmoregulation;gbkey=CDS;gene=tppB;product=dipeptide and tripeptide permease A;protein_id=WP_000100932.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2457174 2457779 . + . ID=gene2428;Name=SH04_RS12155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12155;old_locus_tag=SH04_12160 NZ_CP010443.1 Protein Homology CDS 2457174 2457779 . + 0 ID=cds2364;Parent=gene2428;Dbxref=Genbank:WP_000765749.1;Name=WP_000765749.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_000765749.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2457823 2458683 . - . ID=gene2429;Name=SH04_RS12160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12160;old_locus_tag=SH04_12165 NZ_CP010443.1 Protein Homology CDS 2457823 2458683 . - 0 ID=cds2365;Parent=gene2429;Dbxref=Genbank:WP_000789751.1;Name=WP_000789751.1;Note=catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal;gbkey=CDS;product=pyridoxamine kinase;protein_id=WP_000789751.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2458745 2460019 . - . ID=gene2430;Name=SH04_RS12165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12165;old_locus_tag=SH04_12170 NZ_CP010443.1 Protein Homology CDS 2458745 2460019 . - 0 ID=cds2366;Parent=gene2430;Dbxref=Genbank:WP_001295400.1;Name=WP_001295400.1;gbkey=CDS;product=tyrosine--tRNA ligase;protein_id=WP_001295400.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2460148 2460804 . - . ID=gene2431;Name=SH04_RS12170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12170;old_locus_tag=SH04_12175 NZ_CP010443.1 Protein Homology CDS 2460148 2460804 . - 0 ID=cds2367;Parent=gene2431;Dbxref=Genbank:WP_001282319.1;Name=WP_001282319.1;Note=catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate;gbkey=CDS;product=pyridoxine/pyridoxamine 5'-phosphate oxidase;protein_id=WP_001282319.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2460863 2461192 . - . ID=gene2432;Name=SH04_RS12175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12175;old_locus_tag=SH04_12180 NZ_CP010443.1 Protein Homology CDS 2460863 2461192 . - 0 ID=cds2368;Parent=gene2432;Dbxref=Genbank:WP_000178044.1;Name=WP_000178044.1;Note=MliC%3B membrane-bound lysozyme inhibitor of c-type lysozyme;gbkey=CDS;product=lysozyme inhibitor;protein_id=WP_000178044.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2461290 2462399 . - . ID=gene2433;Name=anmK;gbkey=Gene;gene=anmK;gene_biotype=protein_coding;gene_synonym=ydhH;locus_tag=SH04_RS12180;old_locus_tag=SH04_12185 NZ_CP010443.1 Protein Homology CDS 2461290 2462399 . - 0 ID=cds2369;Parent=gene2433;Dbxref=Genbank:WP_000835039.1;Name=WP_000835039.1;Note=catalyzes hydrolysis of 1%2C6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate%3B involved in murein recycling;gbkey=CDS;gene=anmK;product=anhydro-N-acetylmuramic acid kinase;protein_id=WP_000835039.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2462673 2463140 . + . ID=gene2434;Name=SH04_RS12185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12185;old_locus_tag=SH04_12190 NZ_CP010443.1 Protein Homology CDS 2462673 2463140 . + 0 ID=cds2370;Parent=gene2434;Dbxref=Genbank:WP_000597196.1;Name=WP_000597196.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000597196.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2463187 2463621 . - . ID=gene2435;Name=SH04_RS12190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12190;old_locus_tag=SH04_12195 NZ_CP010443.1 Protein Homology CDS 2463187 2463621 . - 0 ID=cds2371;Parent=gene2435;Dbxref=Genbank:WP_001296943.1;Name=WP_001296943.1;Note=Transcription regulator that can both activate or repress expression;gbkey=CDS;product=SlyA family transcriptional regulator;protein_id=WP_001296943.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2463822 2464058 . + . ID=gene2436;Name=SH04_RS12195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12195;old_locus_tag=SH04_12200 NZ_CP010443.1 Protein Homology CDS 2463822 2464058 . + 0 ID=cds2372;Parent=gene2436;Dbxref=Genbank:WP_000670998.1;Name=WP_000670998.1;gbkey=CDS;product=membrane protein;protein_id=WP_000670998.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2464061 2464918 . + . ID=gene2437;Name=SH04_RS12200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12200;old_locus_tag=SH04_12205 NZ_CP010443.1 Protein Homology CDS 2464061 2464918 . + 0 ID=cds2373;Parent=gene2437;Dbxref=Genbank:WP_001300356.1;Name=WP_001300356.1;gbkey=CDS;product=membrane fusion protein (MFP) of YdhJK efflux pump;protein_id=WP_001300356.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2464918 2466930 . + . ID=gene2438;Name=SH04_RS12205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12205;old_locus_tag=SH04_12210 NZ_CP010443.1 Protein Homology CDS 2464918 2466930 . + 0 ID=cds2374;Parent=gene2438;Dbxref=Genbank:WP_000994333.1;Name=WP_000994333.1;gbkey=CDS;product=efflux protein (PET) component of YdhJK efflux pump;protein_id=WP_000994333.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2466931 2467452 . - . ID=gene2439;Name=SH04_RS12210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12210;old_locus_tag=SH04_12215 NZ_CP010443.1 Protein Homology CDS 2466931 2467452 . - 0 ID=cds2375;Parent=gene2439;Dbxref=Genbank:WP_001296937.1;Name=WP_001296937.1;Note=SodC%3B copper and zinc binding%3B converts superoxide radicals to hydrogen peroxide and water;gbkey=CDS;product=superoxide dismutase [Cu-Zn];protein_id=WP_001296937.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2467533 2468429 . - . ID=gene2440;Name=SH04_RS12215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12215;old_locus_tag=SH04_12220 NZ_CP010443.1 Protein Homology CDS 2467533 2468429 . - 0 ID=cds2376;Parent=gene2440;Dbxref=Genbank:WP_000250656.1;Name=WP_000250656.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000250656.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2468478 2468717 . - . ID=gene2441;Name=SH04_RS12220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12220;old_locus_tag=SH04_12225 NZ_CP010443.1 Protein Homology CDS 2468478 2468717 . - 0 ID=cds2377;Parent=gene2441;Dbxref=Genbank:WP_000840481.1;Name=WP_000840481.1;gbkey=CDS;product=DUF1289 domain-containing protein;protein_id=WP_000840481.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2468820 2469419 . + . ID=gene2442;Name=SH04_RS12225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12225;old_locus_tag=SH04_12230 NZ_CP010443.1 Protein Homology CDS 2468820 2469419 . + 0 ID=cds2378;Parent=gene2442;Dbxref=Genbank:WP_001032936.1;Name=WP_001032936.1;Note=represses nemA which is involved in degradation of N-ethylmaleimide;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001032936.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2469456 2470553 . + . ID=gene2443;Name=SH04_RS12230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12230;old_locus_tag=SH04_12235 NZ_CP010443.1 Protein Homology CDS 2469456 2470553 . + 0 ID=cds2379;Parent=gene2443;Dbxref=Genbank:WP_000093589.1;Name=WP_000093589.1;Note=FMN-linked%3B catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide;gbkey=CDS;product=N-ethylmaleimide reductase;protein_id=WP_000093589.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2470634 2471041 . + . ID=gene2444;Name=SH04_RS12235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12235;old_locus_tag=SH04_12240 NZ_CP010443.1 Protein Homology CDS 2470634 2471041 . + 0 ID=cds2380;Parent=gene2444;Dbxref=Genbank:WP_001237796.1;Name=WP_001237796.1;Note=Ni-dependent%3B catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione;gbkey=CDS;product=lactoylglutathione lyase;protein_id=WP_001237796.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2471144 2471791 . + . ID=gene2445;Name=SH04_RS12240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12240;old_locus_tag=SH04_12245 NZ_CP010443.1 Protein Homology CDS 2471144 2471791 . + 0 ID=cds2381;Parent=gene2445;Dbxref=Genbank:WP_001282283.1;Name=WP_001282283.1;Note=Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A);gbkey=CDS;product=ribonuclease T;protein_id=WP_001282283.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2471884 2476500 . + . ID=gene2446;Name=SH04_RS12245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12245;old_locus_tag=SH04_12250 NZ_CP010443.1 Protein Homology CDS 2471884 2476500 . + 0 ID=cds2382;Parent=gene2446;Dbxref=Genbank:WP_001310858.1;Name=WP_001310858.1;Note=similar to the DNA and RNA helicase superfamily II and eukaryotic DEAD family of helicases%3B longest known protein in E. coli;gbkey=CDS;product=ATP-dependent helicase;protein_id=WP_001310858.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2476551 2476898 . - . ID=gene2447;Name=SH04_RS12250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12250;old_locus_tag=SH04_12255 NZ_CP010443.1 Protein Homology CDS 2476551 2476898 . - 0 ID=cds2383;Parent=gene2447;Dbxref=Genbank:WP_000108172.1;Name=WP_000108172.1;gbkey=CDS;product=glutaredoxin;protein_id=WP_000108172.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2477232 2478047 . + . ID=gene2448;Name=SH04_RS12255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12255;old_locus_tag=SH04_12260 NZ_CP010443.1 Protein Homology CDS 2477232 2478047 . + 0 ID=cds2384;Parent=gene2448;Dbxref=Genbank:WP_000101193.1;Name=WP_000101193.1;gbkey=CDS;product=murein DD-endopeptidase MepH;protein_id=WP_000101193.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2478175 2478756 . + . ID=gene2449;Name=SH04_RS12260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12260;old_locus_tag=SH04_12265 NZ_CP010443.1 Protein Homology CDS 2478175 2478756 . + 0 ID=cds2385;Parent=gene2449;Dbxref=Genbank:WP_000007283.1;Name=WP_000007283.1;Note=SodB%3B iron binding%3B present under aerobic and anaerobic conditions%3B destroys free radicals;gbkey=CDS;product=superoxide dismutase [Fe];protein_id=WP_000007283.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2478918 2480087 . - . ID=gene2450;Name=SH04_RS12265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12265;old_locus_tag=SH04_12270 NZ_CP010443.1 Protein Homology CDS 2478918 2480087 . - 0 ID=cds2386;Parent=gene2450;Dbxref=Genbank:WP_000701040.1;Name=WP_000701040.1;gbkey=CDS;product=transporter;protein_id=WP_000701040.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2480253 2480342 . - . ID=gene2451;Name=SH04_RS12270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12270;old_locus_tag=SH04_12275 NZ_CP010443.1 Protein Homology CDS 2480253 2480342 . - 0 ID=cds2387;Parent=gene2451;Dbxref=Genbank:WP_000102278.1;Name=WP_000102278.1;gbkey=CDS;product=stress response membrane;protein_id=WP_000102278.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2480641 2481666 . + . ID=gene2452;Name=SH04_RS12275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12275;old_locus_tag=SH04_12280 NZ_CP010443.1 Protein Homology CDS 2480641 2481666 . + 0 ID=cds2388;Parent=gene2452;Dbxref=Genbank:WP_000190982.1;Name=WP_000190982.1;Note=binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis%3B is involved in regulation of purB%2C purC%2C purEK%2C purHD%2C purL%2C purMN and guaBA expression%3B binds hypoxanthine and guanine as inducers;gbkey=CDS;product=PurR family transcriptional regulator;protein_id=WP_000190982.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2481663 2482595 . - . ID=gene2453;Name=SH04_RS12280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12280;old_locus_tag=SH04_12285 NZ_CP010443.1 Protein Homology CDS 2481663 2482595 . - 0 ID=cds2389;Parent=gene2453;Dbxref=Genbank:WP_000269501.1;Name=WP_000269501.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000269501.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2482708 2483919 . + . ID=gene2454;Name=SH04_RS12285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12285;old_locus_tag=SH04_12290 NZ_CP010443.1 Protein Homology CDS 2482708 2483919 . + 0 ID=cds2390;Parent=gene2454;Dbxref=Genbank:WP_001182347.1;Name=WP_001182347.1;Note=uncharacterized member of the major facilitator superfamily (MFS);gbkey=CDS;product=Bcr/CflA family drug resistance efflux transporter;protein_id=WP_001182347.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2484210 2485358 . + . ID=gene2455;Name=SH04_RS12290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12290;old_locus_tag=SH04_12295 NZ_CP010443.1 Protein Homology CDS 2484210 2485358 . + 0 ID=cds2391;Parent=gene2455;Dbxref=Genbank:WP_000098896.1;Name=WP_000098896.1;Note=catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge;gbkey=CDS;product=cyclopropane-fatty-acyl-phospholipid synthase;protein_id=WP_000098896.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2485398 2486039 . - . ID=gene2456;Name=SH04_RS12295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12295;old_locus_tag=SH04_12300 NZ_CP010443.1 Protein Homology CDS 2485398 2486039 . - 0 ID=cds2392;Parent=gene2456;Dbxref=Genbank:WP_000493947.1;Name=WP_000493947.1;Note=catalyzes the formation of riboflavin from 6%2C7-dimethyl-8-(1-D-ribityl)lumazine;gbkey=CDS;product=riboflavin synthase;protein_id=WP_000493947.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2486254 2487627 . + . ID=gene2457;Name=SH04_RS12300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12300;old_locus_tag=SH04_12305 NZ_CP010443.1 Protein Homology CDS 2486254 2487627 . + 0 ID=cds2393;Parent=gene2457;Dbxref=Genbank:WP_001174940.1;Name=WP_001174940.1;Note=NorM%3B MdtK%3B functions as a Na(+)/drug antiporter%3B inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones;gbkey=CDS;product=multidrug resistance protein MdtK;protein_id=WP_001174940.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2487668 2488924 . - . ID=gene2458;Name=SH04_RS12305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12305;old_locus_tag=SH04_12310 NZ_CP010443.1 Protein Homology CDS 2487668 2488924 . - 0 ID=cds2394;Parent=gene2458;Dbxref=Genbank:WP_000534271.1;Name=WP_000534271.1;gbkey=CDS;product=autotransporter adhesin-related protein;protein_id=WP_000534271.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2489232 2489308 . + . ID=gene2459;Name=SH04_RS12310;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS12310;old_locus_tag=SH04_12315 NZ_CP010443.1 tRNAscan-SE tRNA 2489232 2489308 . + . ID=rna64;Parent=gene2459;anticodon=(pos:2489266..2489268);gbkey=tRNA;product=tRNA-Val NZ_CP010443.1 tRNAscan-SE exon 2489232 2489308 . + . ID=id145;Parent=rna64;anticodon=(pos:2489266..2489268);gbkey=tRNA;product=tRNA-Val NZ_CP010443.1 RefSeq gene 2489313 2489389 . + . ID=gene2460;Name=SH04_RS12315;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS12315;old_locus_tag=SH04_12320 NZ_CP010443.1 tRNAscan-SE tRNA 2489313 2489389 . + . ID=rna65;Parent=gene2460;anticodon=(pos:2489347..2489349);gbkey=tRNA;product=tRNA-Val NZ_CP010443.1 tRNAscan-SE exon 2489313 2489389 . + . ID=id146;Parent=rna65;anticodon=(pos:2489347..2489349);gbkey=tRNA;product=tRNA-Val NZ_CP010443.1 RefSeq gene 2489497 2489802 . + . ID=gene2461;Name=SH04_RS12320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12320;old_locus_tag=SH04_12325 NZ_CP010443.1 Protein Homology CDS 2489497 2489802 . + 0 ID=cds2395;Parent=gene2461;Dbxref=Genbank:WP_000212657.1;Name=WP_000212657.1;gbkey=CDS;product=monooxygenase;protein_id=WP_000212657.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2489928 2491532 . + . ID=gene2462;Name=SH04_RS12325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12325;old_locus_tag=SH04_12330 NZ_CP010443.1 Protein Homology CDS 2489928 2491532 . + 0 ID=cds2396;Parent=gene2462;Dbxref=Genbank:WP_000716950.1;Name=WP_000716950.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000716950.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2491544 2492356 . - . ID=gene2463;Name=SH04_RS12330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12330;old_locus_tag=SH04_12335 NZ_CP010443.1 Protein Homology CDS 2491544 2492356 . - 0 ID=cds2397;Parent=gene2463;Dbxref=Genbank:WP_000587525.1;Name=WP_000587525.1;gbkey=CDS;product=FNR%2C Nar%2C NarP-regulated protein%3B subunit of YdhYVWXUT oxidoreductase complex;protein_id=WP_000587525.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2492360 2493145 . - . ID=gene2464;Name=SH04_RS12335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12335;old_locus_tag=SH04_12340 NZ_CP010443.1 Protein Homology CDS 2492360 2493145 . - 0 ID=cds2398;Parent=gene2464;Dbxref=Genbank:WP_001069979.1;Name=WP_001069979.1;gbkey=CDS;product=protein PhsC;protein_id=WP_001069979.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2493142 2493810 . - . ID=gene2465;Name=SH04_RS12340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12340;old_locus_tag=SH04_12345 NZ_CP010443.1 Protein Homology CDS 2493142 2493810 . - 0 ID=cds2399;Parent=gene2465;Dbxref=Genbank:WP_001310861.1;Name=WP_001310861.1;gbkey=CDS;product=4Fe-4S ferredoxin;protein_id=WP_001310861.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2493874 2494512 . - . ID=gene2466;Name=SH04_RS12345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12345;old_locus_tag=SH04_12350 NZ_CP010443.1 Protein Homology CDS 2493874 2494512 . - 0 ID=cds2400;Parent=gene2466;Dbxref=Genbank:WP_001301419.1;Name=WP_001301419.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001301419.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2494525 2496627 . - . ID=gene2467;Name=SH04_RS12350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12350;old_locus_tag=SH04_12355 NZ_CP010443.1 Protein Homology CDS 2494525 2496627 . - 0 ID=cds2401;Parent=gene2467;Dbxref=Genbank:WP_001273527.1;Name=WP_001273527.1;gbkey=CDS;product=oxidoreductase subunit;protein_id=WP_001273527.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2496648 2497274 . - . ID=gene2468;Name=SH04_RS12355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12355;old_locus_tag=SH04_12360 NZ_CP010443.1 Protein Homology CDS 2496648 2497274 . - 0 ID=cds2402;Parent=gene2468;Dbxref=Genbank:WP_001070230.1;Name=WP_001070230.1;gbkey=CDS;product=4Fe-4S ferredoxin;protein_id=WP_001070230.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2497729 2497938 . - . ID=gene2469;Name=SH04_RS12360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12360;old_locus_tag=SH04_12365 NZ_CP010443.1 Protein Homology CDS 2497729 2497938 . - 0 ID=cds2403;Parent=gene2469;Dbxref=Genbank:WP_000528342.1;Name=WP_000528342.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000528342.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2498495 2499907 . + . ID=gene2470;Name=SH04_RS12365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12365;old_locus_tag=SH04_12370 NZ_CP010443.1 Protein Homology CDS 2498495 2499907 . + 0 ID=cds2404;Parent=gene2470;Dbxref=Genbank:WP_001295403.1;Name=WP_001295403.1;Note=catalyzes the formation of phosphoenolpyruvate from pyruvate;gbkey=CDS;product=pyruvate kinase I;protein_id=WP_001295403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2500218 2500454 . + . ID=gene2471;Name=SH04_RS12370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12370;old_locus_tag=SH04_12375 NZ_CP010443.1 Protein Homology CDS 2500218 2500454 . + 0 ID=cds2405;Parent=gene2471;Dbxref=Genbank:WP_000648420.1;Name=WP_000648420.1;Note=major outer membrane lipoprotein%3B interacts with peptidoglycan to maintain the integrity of the cell envelope;gbkey=CDS;product=murein lipoprotein;protein_id=WP_000648420.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2500518 2501522 . - . ID=gene2472;Name=SH04_RS12375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12375;old_locus_tag=SH04_12380 NZ_CP010443.1 Protein Homology CDS 2500518 2501522 . - 0 ID=cds2406;Parent=gene2472;Dbxref=Genbank:WP_000817105.1;Name=WP_000817105.1;Note=catalyzes the formation of a meso-diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link in peptidoglycan synthesis;gbkey=CDS;product=transpeptidase;protein_id=WP_000817105.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2501671 2502087 . - . ID=gene2473;Name=SH04_RS12380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12380;old_locus_tag=SH04_12385 NZ_CP010443.1 Protein Homology CDS 2501671 2502087 . - 0 ID=cds2407;Parent=gene2473;Dbxref=Genbank:WP_001196530.1;Name=WP_001196530.1;Note=Acts with SufS to catalyze the formation of L-alanine from L-cysteine;gbkey=CDS;product=cysteine desulfuration protein SufE;protein_id=WP_001196530.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2502100 2503320 . - . ID=gene2474;Name=SH04_RS12385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12385;old_locus_tag=SH04_12390 NZ_CP010443.1 Protein Homology CDS 2502100 2503320 . - 0 ID=cds2408;Parent=gene2474;Dbxref=Genbank:WP_000577988.1;Name=WP_000577988.1;gbkey=CDS;product=cysteine desulfurase;protein_id=WP_000577988.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2503317 2504588 . - . ID=gene2475;Name=SH04_RS12390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12390;old_locus_tag=SH04_12395 NZ_CP010443.1 Protein Homology CDS 2503317 2504588 . - 0 ID=cds2409;Parent=gene2475;Dbxref=Genbank:WP_000907979.1;Name=WP_000907979.1;Note=with SufBC activates cysteine desulfurase SufS;gbkey=CDS;product=Fe-S cluster assembly protein SufD;protein_id=WP_000907979.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2504563 2505309 . - . ID=gene2476;Name=sufC;gbkey=Gene;gene=sufC;gene_biotype=protein_coding;locus_tag=SH04_RS12395;old_locus_tag=SH04_12400 NZ_CP010443.1 Protein Homology CDS 2504563 2505309 . - 0 ID=cds2410;Parent=gene2476;Dbxref=Genbank:WP_000948863.1;Name=WP_000948863.1;Note=part of SUF system involved in inserting iron-sulfur clusters into proteins%3B in Escherichia coli this protein forms a complex with SufBD%3B the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE;gbkey=CDS;gene=sufC;product=Fe-S cluster assembly ATPase SufC;protein_id=WP_000948863.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2505319 2506806 . - . ID=gene2477;Name=SH04_RS12400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12400;old_locus_tag=SH04_12405 NZ_CP010443.1 Protein Homology CDS 2505319 2506806 . - 0 ID=cds2411;Parent=gene2477;Dbxref=Genbank:WP_000089364.1;Name=WP_000089364.1;Note=with SufCD activates cysteine desulfurase SufS;gbkey=CDS;product=FeS cluster assembly protein SufB;protein_id=WP_000089364.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2506815 2507183 . - . ID=gene2478;Name=sufA;gbkey=Gene;gene=sufA;gene_biotype=protein_coding;locus_tag=SH04_RS12405;old_locus_tag=SH04_12410 NZ_CP010443.1 Protein Homology CDS 2506815 2507183 . - 0 ID=cds2412;Parent=gene2478;Dbxref=Genbank:WP_000367160.1;Name=WP_000367160.1;Note=functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]%3B [4Fe-4S]) are assembled%3B forms a homodimer%3B similar to IscA protein;gbkey=CDS;gene=sufA;product=protein SufA;protein_id=WP_000367160.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2507731 2507919 . - . ID=gene2479;Name=SH04_RS12410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12410;old_locus_tag=SH04_12415 NZ_CP010443.1 Protein Homology CDS 2507731 2507919 . - 0 ID=cds2413;Parent=gene2479;Dbxref=Genbank:WP_001296104.1;Name=WP_001296104.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296104.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2508019 2508429 . - . ID=gene2480;Name=SH04_RS12415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12415;old_locus_tag=SH04_12420 NZ_CP010443.1 Protein Homology CDS 2508019 2508429 . - 0 ID=cds2414;Parent=gene2480;Dbxref=Genbank:WP_000637982.1;Name=WP_000637982.1;Note=required for efficient enterobactin production;gbkey=CDS;product=1%2C4-dihydroxy-2-naphthoyl-CoA hydrolase;protein_id=WP_000637982.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2508426 2511482 . - . ID=gene2481;Name=SH04_RS12420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12420;old_locus_tag=SH04_12425 NZ_CP010443.1 Protein Homology CDS 2508426 2511482 . - 0 ID=cds2415;Parent=gene2481;Dbxref=Genbank:WP_000613008.1;Name=WP_000613008.1;gbkey=CDS;product=FAD-linked oxidoreductase;protein_id=WP_000613008.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2511871 2512983 . + . ID=gene2482;Name=SH04_RS12425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12425;old_locus_tag=SH04_12430 NZ_CP010443.1 Protein Homology CDS 2511871 2512983 . + 0 ID=cds2416;Parent=gene2482;Dbxref=Genbank:WP_000248636.1;Name=WP_000248636.1;Note=YdiK%3B inner membrane protein%3B ydiK promoter presents a PurR sequence%2C suggesting that its expression is purine-regulated%3B unknown function;gbkey=CDS;product=hypothetical protein;protein_id=WP_000248636.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2513412 2513768 . + . ID=gene2483;Name=SH04_RS12430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12430;old_locus_tag=SH04_12435 NZ_CP010443.1 Protein Homology CDS 2513412 2513768 . + 0 ID=cds2417;Parent=gene2483;Dbxref=Genbank:WP_001310864.1;Name=WP_001310864.1;gbkey=CDS;product=HTH domain DNA-binding protein;protein_id=WP_001310864.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2513868 2515082 . + . ID=gene2484;Name=SH04_RS12435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12435;old_locus_tag=SH04_12440 NZ_CP010443.1 Protein Homology CDS 2513868 2515082 . + 0 ID=cds2418;Parent=gene2484;Dbxref=Genbank:WP_000795537.1;Name=WP_000795537.1;gbkey=CDS;product=transporter;protein_id=WP_000795537.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2515309 2516574 . + . ID=gene2485;Name=SH04_RS12440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12440;old_locus_tag=SH04_12445 NZ_CP010443.1 Protein Homology CDS 2515309 2516574 . + 0 ID=cds2419;Parent=gene2485;Dbxref=Genbank:WP_000081197.1;Name=WP_000081197.1;gbkey=CDS;product=transporter;protein_id=WP_000081197.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2516586 2517452 . + . ID=gene2486;Name=SH04_RS12445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12445;old_locus_tag=SH04_12450 NZ_CP010443.1 Protein Homology CDS 2516586 2517452 . + 0 ID=cds2420;Parent=gene2486;Dbxref=Genbank:WP_000383469.1;Name=WP_000383469.1;Note=YdiB%3B quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate;gbkey=CDS;product=quinate/shikimate dehydrogenase;protein_id=WP_000383469.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2517483 2518241 . + . ID=gene2487;Name=SH04_RS12450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12450;old_locus_tag=SH04_12455 NZ_CP010443.1 Protein Homology CDS 2517483 2518241 . + 0 ID=cds2421;Parent=gene2487;Dbxref=Genbank:WP_000860201.1;Name=WP_000860201.1;gbkey=CDS;product=3-dehydroquinate dehydratase;protein_id=WP_000860201.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2518384 2519979 . + . ID=gene2488;Name=SH04_RS12455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12455;old_locus_tag=SH04_12460 NZ_CP010443.1 Protein Homology CDS 2518384 2519979 . + 0 ID=cds2422;Parent=gene2488;Dbxref=Genbank:WP_000805700.1;Name=WP_000805700.1;gbkey=CDS;product=acetate CoA-transferase YdiF;protein_id=WP_000805700.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2519993 2521144 . + . ID=gene2489;Name=SH04_RS12460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12460;old_locus_tag=SH04_12465 NZ_CP010443.1 Protein Homology CDS 2519993 2521144 . + 0 ID=cds2423;Parent=gene2489;Dbxref=Genbank:WP_000347850.1;Name=WP_000347850.1;Note=may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=WP_000347850.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2521187 2522098 . - . ID=gene2490;Name=SH04_RS12465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12465;old_locus_tag=SH04_12470 NZ_CP010443.1 Protein Homology CDS 2521187 2522098 . - 0 ID=cds2424;Parent=gene2490;Dbxref=Genbank:WP_000284799.1;Name=WP_000284799.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000284799.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2522201 2522377 . - . ID=gene2491;Name=SH04_RS12470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12470;old_locus_tag=SH04_12475 NZ_CP010443.1 Protein Homology CDS 2522201 2522377 . - 0 ID=cds2425;Parent=gene2491;Dbxref=Genbank:WP_000398611.1;Name=WP_000398611.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000398611.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2522414 2523178 . + . ID=gene2492;Name=SH04_RS12475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12475;old_locus_tag=SH04_12480 NZ_CP010443.1 Protein Homology CDS 2522414 2523178 . + 0 ID=cds2426;Parent=gene2492;Dbxref=Genbank:WP_000692135.1;Name=WP_000692135.1;gbkey=CDS;product=electron transfer flavoprotein subunit;protein_id=WP_000692135.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2523198 2524136 . + . ID=gene2493;Name=fixB;gbkey=Gene;gene=fixB;gene_biotype=protein_coding;locus_tag=SH04_RS12480;old_locus_tag=SH04_12485 NZ_CP010443.1 Protein Homology CDS 2523198 2524136 . + 0 ID=cds2427;Parent=gene2493;Dbxref=Genbank:WP_000080722.1;Name=WP_000080722.1;Note=involved in electron transfer during carnitine metabolism;gbkey=CDS;gene=fixB;product=electron transfer flavoprotein%2C FAD-binding subunit;protein_id=WP_000080722.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2524192 2525481 . + . ID=gene2494;Name=SH04_RS12485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12485;old_locus_tag=SH04_12490 NZ_CP010443.1 Protein Homology CDS 2524192 2525481 . + 0 ID=cds2428;Parent=gene2494;Dbxref=Genbank:WP_001278525.1;Name=WP_001278525.1;Note=FAD/NAD(P)-binding domain%3B possibly part of an electron transfer system required for anaerobic carnitine reduction;gbkey=CDS;product=electron transfer flavoprotein-quinone oxidoreductase;protein_id=WP_001278525.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2525478 2525771 . + . ID=gene2495;Name=SH04_RS12490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12490;old_locus_tag=SH04_12495 NZ_CP010443.1 Protein Homology CDS 2525478 2525771 . + 0 ID=cds2429;Parent=gene2495;Dbxref=Genbank:WP_000081081.1;Name=WP_000081081.1;gbkey=CDS;product=ferredoxin-like protein YdiT;protein_id=WP_000081081.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2525828 2527474 . + . ID=gene2496;Name=SH04_RS12495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12495;old_locus_tag=SH04_12500 NZ_CP010443.1 Protein Homology CDS 2525828 2527474 . + 0 ID=cds2430;Parent=gene2496;Dbxref=Genbank:WP_001336282.1;Name=WP_001336282.1;Note=acts in anaerobic beta-oxidation of fatty acids%3B possible ligase/synthase involved in anaerobic growth on fatty acids;gbkey=CDS;product=short-chain-fatty-acid--CoA ligase;protein_id=WP_001336282.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2527531 2529909 . - . ID=gene2497;Name=SH04_RS12500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12500;old_locus_tag=SH04_12505 NZ_CP010443.1 Protein Homology CDS 2527531 2529909 . - 0 ID=cds2431;Parent=gene2497;Dbxref=Genbank:WP_000069375.1;Name=WP_000069375.1;Note=catalyzes the formation of phosphoenolpyruvate from pyruvate;gbkey=CDS;product=phosphoenolpyruvate synthase;protein_id=WP_000069375.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2529963 2530130 . - . ID=gene2498;Name=SH04_RS12505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12505;old_locus_tag=SH04_12510 NZ_CP010443.1 Protein Homology CDS 2529963 2530130 . - 0 ID=cds2432;Parent=gene2498;Dbxref=Genbank:WP_001298222.1;Name=WP_001298222.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001298222.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2530242 2531075 . + . ID=gene2499;Name=SH04_RS12510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12510;old_locus_tag=SH04_12515 NZ_CP010443.1 Protein Homology CDS 2530242 2531075 . + 0 ID=cds2433;Parent=gene2499;Dbxref=Genbank:WP_000368046.1;Name=WP_000368046.1;gbkey=CDS;product=phosphoenolpyruvate synthase regulatory protein;protein_id=WP_000368046.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2531232 2532278 . + . ID=gene2500;Name=SH04_RS12515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12515;old_locus_tag=SH04_12520 NZ_CP010443.1 Protein Homology CDS 2531232 2532278 . + 0 ID=cds2434;Parent=gene2500;Dbxref=Genbank:WP_001082229.1;Name=WP_001082229.1;gbkey=CDS;product=phospho-2-dehydro-3-deoxyheptonate aldolase Trp-sensitive;protein_id=WP_001082229.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2532410 2532601 . + . ID=gene2501;Name=SH04_RS12520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12520;old_locus_tag=SH04_12525 NZ_CP010443.1 Protein Homology CDS 2532410 2532601 . + 0 ID=cds2435;Parent=gene2501;Dbxref=Genbank:WP_001270809.1;Name=WP_001270809.1;gbkey=CDS;product=hemin uptake protein HemP homolog;protein_id=WP_001270809.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2532605 2534041 . - . ID=gene2502;Name=SH04_RS12525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12525;old_locus_tag=SH04_12530 NZ_CP010443.1 Protein Homology CDS 2532605 2534041 . - 0 ID=cds2436;Parent=gene2502;Dbxref=Genbank:WP_000175703.1;Name=WP_000175703.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000175703.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2534104 2534817 . - . ID=gene2503;Name=SH04_RS12530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12530;old_locus_tag=SH04_12535 NZ_CP010443.1 Protein Homology CDS 2534104 2534817 . - 0 ID=cds2437;Parent=gene2503;Dbxref=Genbank:WP_001300634.1;Name=WP_001300634.1;gbkey=CDS;product=anti-FlhD4C2 factor%2C inactive EAL family phosphodiesterase;protein_id=WP_001300634.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2535064 2535528 . - . ID=gene2504;Name=SH04_RS12535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12535;old_locus_tag=SH04_12540 NZ_CP010443.1 Protein Homology CDS 2535064 2535528 . - 0 ID=cds2438;Parent=gene2504;Dbxref=Genbank:WP_001209795.1;Name=WP_001209795.1;gbkey=CDS;product=endopeptidase;protein_id=WP_001209795.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2535606 2536354 . - . ID=gene2505;Name=SH04_RS12540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS12540;pseudo=true NZ_CP010443.1 Protein Homology CDS 2535606 2536354 . - 0 ID=cds2439;Parent=gene2505;Note=ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell;exception=annotated by transcript or proteomic data;gbkey=CDS;product=vitamin B12-transporter ATPase;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 2536354 2536905 . - . ID=gene2506;Name=btuE;gbkey=Gene;gene=btuE;gene_biotype=protein_coding;locus_tag=SH04_RS12545;old_locus_tag=SH04_12550 NZ_CP010443.1 Protein Homology CDS 2536354 2536905 . - 0 ID=cds2440;Parent=gene2506;Dbxref=Genbank:WP_001154168.1;Name=WP_001154168.1;Note=similar to glutathione peroxidase%3B member of the btuCED operon which is required for vitamin B12 transport across the inner membrane;gbkey=CDS;gene=btuE;product=vitamin B12 transport periplasmic protein BtuE;protein_id=WP_001154168.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2536968 2537948 . - . ID=gene2507;Name=SH04_RS12550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12550;old_locus_tag=SH04_12555 NZ_CP010443.1 Protein Homology CDS 2536968 2537948 . - 0 ID=cds2441;Parent=gene2507;Dbxref=Genbank:WP_000956528.1;Name=WP_000956528.1;Note=with BtuD and BtuF transports vitamin B12 into the cell;gbkey=CDS;product=vitamin B12 import system permease BtuC;protein_id=WP_000956528.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2538049 2538348 . - . ID=gene2508;Name=ihfA;gbkey=Gene;gene=ihfA;gene_biotype=protein_coding;locus_tag=SH04_RS12555;old_locus_tag=SH04_12560 NZ_CP010443.1 Protein Homology CDS 2538049 2538348 . - 0 ID=cds2442;Parent=gene2508;Dbxref=Genbank:WP_001229265.1;Name=WP_001229265.1;Note=This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control;gbkey=CDS;gene=ihfA;product=integration host factor subunit alpha;protein_id=WP_001229265.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2538353 2540740 . - . ID=gene2509;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=SH04_RS12560;old_locus_tag=SH04_12565 NZ_CP010443.1 Protein Homology CDS 2538353 2540740 . - 0 ID=cds2443;Parent=gene2509;Dbxref=Genbank:WP_000672380.1;Name=WP_000672380.1;Note=catalyzes a two-step reaction%2C first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B forms a tetramer of alpha(2)beta(2)%3B binds two magnesium ions per tetramer%3B type 2 subfamily;gbkey=CDS;gene=pheT;product=phenylalanine--tRNA ligase subunit beta;protein_id=WP_000672380.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2540755 2541738 . - . ID=gene2510;Name=SH04_RS12565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12565;old_locus_tag=SH04_12570 NZ_CP010443.1 Protein Homology CDS 2540755 2541738 . - 0 ID=cds2444;Parent=gene2510;Dbxref=Genbank:WP_000018596.1;Name=WP_000018596.1;gbkey=CDS;product=phenylalanine--tRNA ligase subunit alpha;protein_id=WP_000018596.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2541852 2541947 . - . ID=gene2511;Name=SH04_RS12570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12570;old_locus_tag=SH04_12575 NZ_CP010443.1 Protein Homology CDS 2541852 2541947 . - 0 ID=cds2445;Parent=gene2511;Dbxref=Genbank:WP_001264819.1;Name=WP_001264819.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001264819.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2542189 2542545 . - . ID=gene2512;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=SH04_RS12575;old_locus_tag=SH04_12580 NZ_CP010443.1 Protein Homology CDS 2542189 2542545 . - 0 ID=cds2446;Parent=gene2512;Dbxref=Genbank:WP_000124850.1;Name=WP_000124850.1;Note=binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit;gbkey=CDS;gene=rplT;product=50S ribosomal protein L20;protein_id=WP_000124850.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2542598 2542795 . - . ID=gene2513;Name=SH04_RS12580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12580;old_locus_tag=SH04_12585 NZ_CP010443.1 Protein Homology CDS 2542598 2542795 . - 0 ID=cds2447;Parent=gene2513;Dbxref=Genbank:WP_001124225.1;Name=WP_001124225.1;gbkey=CDS;product=50S ribosomal protein L35;protein_id=WP_001124225.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2542892 2543434 . - . ID=gene2514;Name=SH04_RS12585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12585;old_locus_tag=SH04_12590 NZ_CP010443.1 Protein Homology CDS 2542892 2543434 . - 0 ID=cds2448;Parent=gene2514;Dbxref=Genbank:WP_001700733.1;Name=WP_001700733.1;gbkey=CDS;product=translation initiation factor IF-3;protein_id=WP_001700733.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2543438 2545366 . - . ID=gene2515;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;locus_tag=SH04_RS12590;old_locus_tag=SH04_12595 NZ_CP010443.1 Protein Homology CDS 2543438 2545366 . - 0 ID=cds2449;Parent=gene2515;Dbxref=Genbank:WP_001144202.1;Name=WP_001144202.1;Note=catalyzes a two-step reaction%2C first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr);gbkey=CDS;gene=thrS;product=threonine--tRNA ligase;protein_id=WP_001144202.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2545890 2547789 . + . ID=gene2516;Name=SH04_RS12595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS12595;pseudo=true NZ_CP010443.1 Protein Homology CDS 2545890 2547789 . + 0 ID=cds2450;Parent=gene2516;exception=annotated by transcript or proteomic data;gbkey=CDS;product=ankyrin;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 2547961 2548068 . + . ID=gene2517;Name=SH04_RS12600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12600;old_locus_tag=SH04_12605 NZ_CP010443.1 Protein Homology CDS 2547961 2548068 . + 0 ID=cds2451;Parent=gene2517;Dbxref=Genbank:WP_001142445.1;Name=WP_001142445.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001142445.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2548121 2548879 . - . ID=gene2518;Name=SH04_RS12605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12605;old_locus_tag=SH04_12610 NZ_CP010443.1 Protein Homology CDS 2548121 2548879 . - 0 ID=cds2452;Parent=gene2518;Dbxref=Genbank:WP_038432589.1;Name=WP_038432589.1;gbkey=CDS;product=membrane protein;protein_id=WP_038432589.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2549166 2550095 . + . ID=gene2519;Name=SH04_RS12610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12610;old_locus_tag=SH04_12615 NZ_CP010443.1 Protein Homology CDS 2549166 2550095 . + 0 ID=cds2453;Parent=gene2519;Dbxref=Genbank:WP_000251727.1;Name=WP_000251727.1;gbkey=CDS;product=ATP-dependent 6-phosphofructokinase;protein_id=WP_000251727.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2550196 2550486 . + . ID=gene2520;Name=SH04_RS12615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12615;old_locus_tag=SH04_12620 NZ_CP010443.1 Protein Homology CDS 2550196 2550486 . + 0 ID=cds2454;Parent=gene2520;Dbxref=Genbank:WP_000146159.1;Name=WP_000146159.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000146159.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2550592 2551452 . + . ID=gene2521;Name=SH04_RS12620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12620;old_locus_tag=SH04_12625 NZ_CP010443.1 Protein Homology CDS 2550592 2551452 . + 0 ID=cds2455;Parent=gene2521;Dbxref=Genbank:WP_000267650.1;Name=WP_000267650.1;gbkey=CDS;product=fructosamine kinase;protein_id=WP_000267650.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2551493 2552029 . - . ID=gene2522;Name=SH04_RS12625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12625;old_locus_tag=SH04_12630 NZ_CP010443.1 Protein Homology CDS 2551493 2552029 . - 0 ID=cds2456;Parent=gene2522;Dbxref=Genbank:WP_000222163.1;Name=WP_000222163.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000222163.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2552176 2552844 . + . ID=gene2523;Name=SH04_RS12630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12630;old_locus_tag=SH04_12635 NZ_CP010443.1 Protein Homology CDS 2552176 2552844 . + 0 ID=cds2457;Parent=gene2523;Dbxref=Genbank:WP_000106833.1;Name=WP_000106833.1;Note=YniC%3B catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate%2C mannose 6-phosphate and p-nitrophenyl phosphate;gbkey=CDS;product=2-deoxyglucose-6-phosphate phosphatase;protein_id=WP_000106833.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2553007 2553597 . + . ID=gene2524;Name=SH04_RS12635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12635;old_locus_tag=SH04_12640 NZ_CP010443.1 Protein Homology CDS 2553007 2553597 . + 0 ID=cds2458;Parent=gene2524;Dbxref=Genbank:WP_001297653.1;Name=WP_001297653.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001297653.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2553730 2555121 . + . ID=gene2525;Name=SH04_RS12640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12640;old_locus_tag=SH04_12645 NZ_CP010443.1 Protein Homology CDS 2553730 2555121 . + 0 ID=cds2459;Parent=gene2525;Dbxref=Genbank:WP_001010696.1;Name=WP_001010696.1;gbkey=CDS;product=transporter;protein_id=WP_001010696.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2555125 2555928 . - . ID=gene2526;Name=SH04_RS12645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12645;old_locus_tag=SH04_12650 NZ_CP010443.1 Protein Homology CDS 2555125 2555928 . - 0 ID=cds2460;Parent=gene2526;Dbxref=Genbank:WP_001310874.1;Name=WP_001310874.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001310874.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2556217 2556459 . - . ID=gene2527;Name=SH04_RS12650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12650;old_locus_tag=SH04_12655 NZ_CP010443.1 Protein Homology CDS 2556217 2556459 . - 0 ID=cds2461;Parent=gene2527;Dbxref=Genbank:WP_001295480.1;Name=WP_001295480.1;gbkey=CDS;product=cell division activator CedA;protein_id=WP_001295480.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2556663 2558924 . + . ID=gene2528;Name=katE;gbkey=Gene;gene=katE;gene_biotype=protein_coding;locus_tag=SH04_RS12655;old_locus_tag=SH04_12660 NZ_CP010443.1 Protein Homology CDS 2556663 2558924 . + 0 ID=cds2462;Parent=gene2528;Dbxref=Genbank:WP_000077872.1;Name=WP_000077872.1;Note=Catalase HPII%3B monofunctional catalase that decomposes hydrogen peroxide into water and oxygen%3B serves to protect cells from the toxic effects of hydrogen peroxide;gbkey=CDS;gene=katE;product=catalase HPII;protein_id=WP_000077872.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2559182 2559931 . - . ID=gene2529;Name=SH04_RS12660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12660;old_locus_tag=SH04_12665 NZ_CP010443.1 Protein Homology CDS 2559182 2559931 . - 0 ID=cds2463;Parent=gene2529;Dbxref=Genbank:WP_000440471.1;Name=WP_000440471.1;gbkey=CDS;product=chitooligosaccharide deacetylase ChbG;protein_id=WP_000440471.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2559944 2561296 . - . ID=gene2530;Name=SH04_RS12665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12665;old_locus_tag=SH04_12670 NZ_CP010443.1 Protein Homology CDS 2559944 2561296 . - 0 ID=cds2464;Parent=gene2530;Dbxref=Genbank:WP_000078765.1;Name=WP_000078765.1;Note=catalyzes the fromation of N-acetyl-D-glucosamine and N-acetyl-D-glucosamine-6-phosphate from diacetylchitobiose-6-phosphate;gbkey=CDS;product=6-phospho-beta-glucosidase;protein_id=WP_000078765.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2561401 2562240 . - . ID=gene2531;Name=SH04_RS12670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12670;old_locus_tag=SH04_12675 NZ_CP010443.1 Protein Homology CDS 2561401 2562240 . - 0 ID=cds2465;Parent=gene2531;Dbxref=Genbank:WP_001301288.1;Name=WP_001301288.1;Note=represses the celABCDF-ydjC operon involved in carbon uptake;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001301288.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2562251 2562601 . - . ID=gene2532;Name=SH04_RS12675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12675;old_locus_tag=SH04_12680 NZ_CP010443.1 Protein Homology CDS 2562251 2562601 . - 0 ID=cds2466;Parent=gene2532;Dbxref=Genbank:WP_000968919.1;Name=WP_000968919.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=N%2CN'-diacetylchitobiose-specific phosphotransferase enzyme IIA component;protein_id=WP_000968919.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2562652 2564010 . - . ID=gene2533;Name=SH04_RS12680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12680;old_locus_tag=SH04_12685 NZ_CP010443.1 Protein Homology CDS 2562652 2564010 . - 0 ID=cds2467;Parent=gene2533;Dbxref=Genbank:WP_000073041.1;Name=WP_000073041.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved in N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=N%2CN'-diacetylchitobiose permease IIC component;protein_id=WP_000073041.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2564095 2564415 . - . ID=gene2534;Name=SH04_RS12685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12685;old_locus_tag=SH04_12690 NZ_CP010443.1 Protein Homology CDS 2564095 2564415 . - 0 ID=cds2468;Parent=gene2534;Dbxref=Genbank:WP_000412169.1;Name=WP_000412169.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved in N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=N%2CN'-diacetylchitobiose-specific phosphotransferase enzyme IIB component;protein_id=WP_000412169.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2564714 2565052 . - . ID=gene2535;Name=SH04_RS12690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12690;old_locus_tag=SH04_12695 NZ_CP010443.1 Protein Homology CDS 2564714 2565052 . - 0 ID=cds2469;Parent=gene2535;Dbxref=Genbank:WP_001039044.1;Name=WP_001039044.1;Note=osmotically-inducible lipoprotein E%3B activator of ntr-like gene protein;gbkey=CDS;product=osmotically-inducible lipoprotein E;protein_id=WP_001039044.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2565254 2566081 . + . ID=gene2536;Name=nadE;gbkey=Gene;gene=nadE;gene_biotype=protein_coding;locus_tag=SH04_RS12695;old_locus_tag=SH04_12700 NZ_CP010443.1 Protein Homology CDS 2565254 2566081 . + 0 ID=cds2470;Parent=gene2536;Dbxref=Genbank:WP_000175026.1;Name=WP_000175026.1;Note=catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP%3B ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one%3B forms homodimers;gbkey=CDS;gene=nadE;product=nH(3)-dependent NAD+ synthetase;protein_id=WP_000175026.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2566050 2566241 . - . ID=gene2537;Name=SH04_RS12700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12700 NZ_CP010443.1 Protein Homology CDS 2566050 2566241 . - 0 ID=cds2471;Parent=gene2537;Dbxref=Genbank:WP_042004706.1;Name=WP_042004706.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_042004706.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2566311 2567198 . + . ID=gene2538;Name=SH04_RS12705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12705;old_locus_tag=SH04_12710 NZ_CP010443.1 Protein Homology CDS 2566311 2567198 . + 0 ID=cds2472;Parent=gene2538;Dbxref=Genbank:WP_000252397.1;Name=WP_000252397.1;Note=3' incision activity%3B acts with UvrC;gbkey=CDS;product=excinuclease cho;protein_id=WP_000252397.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2567158 2567733 . - . ID=gene2539;Name=SH04_RS12710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12710;old_locus_tag=SH04_12715 NZ_CP010443.1 Protein Homology CDS 2567158 2567733 . - 0 ID=cds2473;Parent=gene2539;Dbxref=Genbank:WP_001300480.1;Name=WP_001300480.1;gbkey=CDS;product=protein Ves;protein_id=WP_001300480.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2567936 2568421 . - . ID=gene2540;Name=SH04_RS12715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12715;old_locus_tag=SH04_12720 NZ_CP010443.1 Protein Homology CDS 2567936 2568421 . - 0 ID=cds2474;Parent=gene2540;Dbxref=Genbank:WP_001228984.1;Name=WP_001228984.1;Note=periplasmic protein induced by stress response via Cpx and BaeSR system%3B similar to CpxP;gbkey=CDS;product=spheroplast protein Y;protein_id=WP_001228984.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2568751 2569719 . - . ID=gene2541;Name=SH04_RS12720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12720;old_locus_tag=SH04_12725 NZ_CP010443.1 Protein Homology CDS 2568751 2569719 . - 0 ID=cds2475;Parent=gene2541;Dbxref=Genbank:WP_000368506.1;Name=WP_000368506.1;Note=catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism;gbkey=CDS;product=succinylglutamate desuccinylase;protein_id=WP_000368506.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2569712 2571055 . - . ID=gene2542;Name=SH04_RS12725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12725;old_locus_tag=SH04_12730 NZ_CP010443.1 Protein Homology CDS 2569712 2571055 . - 0 ID=cds2476;Parent=gene2542;Dbxref=Genbank:WP_000994973.1;Name=WP_000994973.1;Note=catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine%2C ammonia and carbon dioxide in arginine degradation;gbkey=CDS;product=N-succinylarginine dihydrolase;protein_id=WP_000994973.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2571052 2572530 . - . ID=gene2543;Name=astD;gbkey=Gene;gene=astD;gene_biotype=protein_coding;locus_tag=SH04_RS12730;old_locus_tag=SH04_12735 NZ_CP010443.1 Protein Homology CDS 2571052 2572530 . - 0 ID=cds2477;Parent=gene2543;Dbxref=Genbank:WP_000177206.1;Name=WP_000177206.1;Note=a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity%3B converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH;gbkey=CDS;gene=astD;product=N-succinylglutamate 5-semialdehyde dehydrogenase;protein_id=WP_000177206.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2572527 2573561 . - . ID=gene2544;Name=SH04_RS12735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12735;old_locus_tag=SH04_12740 NZ_CP010443.1 Protein Homology CDS 2572527 2573561 . - 0 ID=cds2478;Parent=gene2544;Dbxref=Genbank:WP_000989419.1;Name=WP_000989419.1;gbkey=CDS;product=arginine N-succinyltransferase;protein_id=WP_000989419.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2573558 2574778 . - . ID=gene2545;Name=SH04_RS12740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12740;old_locus_tag=SH04_12745 NZ_CP010443.1 Protein Homology CDS 2573558 2574778 . - 0 ID=cds2479;Parent=gene2545;Dbxref=Genbank:WP_000081983.1;Name=WP_000081983.1;Note=catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate%3B also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate;gbkey=CDS;product=succinylornithine aminotransferase;protein_id=WP_000081983.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2575224 2576030 . + . ID=gene2546;Name=SH04_RS12745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12745;old_locus_tag=SH04_12750 NZ_CP010443.1 Protein Homology CDS 2575224 2576030 . + 0 ID=cds2480;Parent=gene2546;Dbxref=Genbank:WP_000673918.1;Name=WP_000673918.1;gbkey=CDS;product=exodeoxyribonuclease III;protein_id=WP_000673918.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2576197 2576907 . + . ID=gene2547;Name=SH04_RS12750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12750;old_locus_tag=SH04_12755 NZ_CP010443.1 Protein Homology CDS 2576197 2576907 . + 0 ID=cds2481;Parent=gene2547;Dbxref=Genbank:WP_001300395.1;Name=WP_001300395.1;gbkey=CDS;product=TVP38/TMEM64 family membrane protein YdjX;protein_id=WP_001300395.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2576912 2577589 . + . ID=gene2548;Name=SH04_RS12755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12755;old_locus_tag=SH04_12760 NZ_CP010443.1 Protein Homology CDS 2576912 2577589 . + 0 ID=cds2482;Parent=gene2548;Dbxref=Genbank:WP_000939212.1;Name=WP_000939212.1;gbkey=CDS;product=ferrodoxin-like lipoprotein;protein_id=WP_000939212.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2577604 2578311 . + . ID=gene2549;Name=SH04_RS12760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12760;old_locus_tag=SH04_12765 NZ_CP010443.1 Protein Homology CDS 2577604 2578311 . + 0 ID=cds2483;Parent=gene2549;Dbxref=Genbank:WP_000980098.1;Name=WP_000980098.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000980098.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2578311 2578859 . + . ID=gene2550;Name=SH04_RS12765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12765;old_locus_tag=SH04_12770 NZ_CP010443.1 Protein Homology CDS 2578311 2578859 . + 0 ID=cds2484;Parent=gene2550;Dbxref=Genbank:WP_000524097.1;Name=WP_000524097.1;gbkey=CDS;product=carboxymuconolactone decarboxylase;protein_id=WP_000524097.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2578869 2580035 . + . ID=gene2551;Name=SH04_RS12770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12770;old_locus_tag=SH04_12775 NZ_CP010443.1 Protein Homology CDS 2578869 2580035 . + 0 ID=cds2485;Parent=gene2551;Dbxref=Genbank:WP_001215339.1;Name=WP_001215339.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001215339.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2580008 2581543 . + . ID=gene2552;Name=SH04_RS12775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12775;old_locus_tag=SH04_12780 NZ_CP010443.1 Protein Homology CDS 2580008 2581543 . + 0 ID=cds2486;Parent=gene2552;Dbxref=Genbank:WP_000224958.1;Name=WP_000224958.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_000224958.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2581543 2582196 . + . ID=gene2553;Name=SH04_RS12780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12780;old_locus_tag=SH04_12785 NZ_CP010443.1 Protein Homology CDS 2581543 2582196 . + 0 ID=cds2487;Parent=gene2553;Dbxref=Genbank:WP_001300558.1;Name=WP_001300558.1;gbkey=CDS;product=ABC transporter ATPase;protein_id=WP_001300558.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2582263 2583570 . + . ID=gene2554;Name=SH04_RS12785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12785;old_locus_tag=SH04_12790 NZ_CP010443.1 Protein Homology CDS 2582263 2583570 . + 0 ID=cds2488;Parent=gene2554;Dbxref=Genbank:WP_001350515.1;Name=WP_001350515.1;gbkey=CDS;product=thiosulfate sulfurtransferase YnjE;protein_id=WP_001350515.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2583579 2584199 . - . ID=gene2555;Name=SH04_RS12790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12790;old_locus_tag=SH04_12795 NZ_CP010443.1 Protein Homology CDS 2583579 2584199 . - 0 ID=cds2489;Parent=gene2555;Dbxref=Genbank:WP_001295484.1;Name=WP_001295484.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295484.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2584286 2584693 . + . ID=gene2556;Name=SH04_RS12795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12795;old_locus_tag=SH04_12800 NZ_CP010443.1 Protein Homology CDS 2584286 2584693 . + 0 ID=cds2490;Parent=gene2556;Dbxref=Genbank:WP_000781888.1;Name=WP_000781888.1;gbkey=CDS;product=CTP pyrophosphohydrolase;protein_id=WP_000781888.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2584659 2584931 . - . ID=gene2557;Name=SH04_RS12800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12800;old_locus_tag=SH04_12805 NZ_CP010443.1 Protein Homology CDS 2584659 2584931 . - 0 ID=cds2491;Parent=gene2557;Dbxref=Genbank:WP_000085240.1;Name=WP_000085240.1;gbkey=CDS;product=DUF1496 domain-containing protein;protein_id=WP_000085240.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2585167 2586510 . + . ID=gene2558;Name=SH04_RS12805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12805;old_locus_tag=SH04_12810 NZ_CP010443.1 Protein Homology CDS 2585167 2586510 . + 0 ID=cds2492;Parent=gene2558;Dbxref=Genbank:WP_000373021.1;Name=WP_000373021.1;Note=converts 2-oxoglutarate to glutamate%3B in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction%3B uses NADPH%3B forms a homohexamer;gbkey=CDS;product=NADP-specific glutamate dehydrogenase;protein_id=WP_000373021.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2586627 2587667 . - . ID=gene2559;Name=SH04_RS12810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12810;old_locus_tag=SH04_12815 NZ_CP010443.1 Protein Homology CDS 2586627 2587667 . - 0 ID=cds2493;Parent=gene2559;Dbxref=Genbank:WP_000756910.1;Name=WP_000756910.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000756910.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2587795 2589756 . - . ID=gene2560;Name=SH04_RS12815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12815;old_locus_tag=SH04_12820 NZ_CP010443.1 Protein Homology CDS 2587795 2589756 . - 0 ID=cds2494;Parent=gene2560;Dbxref=Genbank:WP_001235800.1;Name=WP_001235800.1;Note=decatenates replicating daughter chromosomes;gbkey=CDS;product=DNA topoisomerase 3;protein_id=WP_001235800.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2589761 2590804 . - . ID=gene2561;Name=SH04_RS12820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12820;old_locus_tag=SH04_12825 NZ_CP010443.1 Protein Homology CDS 2589761 2590804 . - 0 ID=cds2495;Parent=gene2561;Dbxref=Genbank:WP_001295485.1;Name=WP_001295485.1;Note=catalyzes the formation of selenophosphate from selenide and ATP;gbkey=CDS;product=selenophosphate synthase;protein_id=WP_001295485.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2590746 2590895 . - . ID=gene2562;Name=SH04_RS12825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12825;old_locus_tag=SH04_12830 NZ_CP010443.1 Protein Homology CDS 2590746 2590895 . - 0 ID=cds2496;Parent=gene2562;Dbxref=Genbank:WP_012602004.1;Name=WP_012602004.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012602004.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2590921 2591472 . - . ID=gene2563;Name=SH04_RS12830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12830;old_locus_tag=SH04_12835 NZ_CP010443.1 Protein Homology CDS 2590921 2591472 . - 0 ID=cds2497;Parent=gene2563;Dbxref=Genbank:WP_000339283.1;Name=WP_000339283.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000339283.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2591526 2591690 . + . ID=gene2564;Name=SH04_RS12835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12835;old_locus_tag=SH04_12840 NZ_CP010443.1 Protein Homology CDS 2591526 2591690 . + 0 ID=cds2498;Parent=gene2564;Dbxref=Genbank:WP_032082967.1;Name=WP_032082967.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032082967.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2591633 2593489 . + . ID=gene2565;Name=SH04_RS12840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12840;old_locus_tag=SH04_12845 NZ_CP010443.1 Protein Homology CDS 2591633 2593489 . + 0 ID=cds2499;Parent=gene2565;Dbxref=Genbank:WP_001259810.1;Name=WP_001259810.1;Note=SppA%3B catalyzes the degradation of cleaved signal peptides%3B essential to maintain secretion of mature proteins across the membrane;gbkey=CDS;product=protease 4;protein_id=WP_001259810.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2593656 2594672 . + . ID=gene2566;Name=ansA;gbkey=Gene;gene=ansA;gene_biotype=protein_coding;locus_tag=SH04_RS12845;old_locus_tag=SH04_12850 NZ_CP010443.1 Protein Homology CDS 2593656 2594672 . + 0 ID=cds2500;Parent=gene2566;Dbxref=Genbank:WP_001170162.1;Name=WP_001170162.1;Note=converts asparagine to aspartate and ammonia;gbkey=CDS;gene=ansA;product=L-asparaginase 1;protein_id=WP_001170162.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2594683 2595324 . + . ID=gene2567;Name=SH04_RS12850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12850;old_locus_tag=SH04_12855 NZ_CP010443.1 Protein Homology CDS 2594683 2595324 . + 0 ID=cds2501;Parent=gene2567;Dbxref=Genbank:WP_001135066.1;Name=WP_001135066.1;Note=catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide;gbkey=CDS;product=pyrazinamidase/nicotinamidase;protein_id=WP_001135066.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2595417 2596775 . - . ID=gene2568;Name=SH04_RS12855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12855;old_locus_tag=SH04_12860 NZ_CP010443.1 Protein Homology CDS 2595417 2596775 . - 0 ID=cds2502;Parent=gene2568;Dbxref=Genbank:WP_000438807.1;Name=WP_000438807.1;gbkey=CDS;product=metabolite transporter;protein_id=WP_000438807.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2596892 2597650 . - . ID=gene2569;Name=SH04_RS12860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12860;old_locus_tag=SH04_12865 NZ_CP010443.1 Protein Homology CDS 2596892 2597650 . - 0 ID=cds2503;Parent=gene2569;Dbxref=Genbank:WP_000719096.1;Name=WP_000719096.1;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_000719096.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2597787 2598767 . - . ID=gene2570;Name=SH04_RS12865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12865;old_locus_tag=SH04_12870 NZ_CP010443.1 Protein Homology CDS 2597787 2598767 . - 0 ID=cds2504;Parent=gene2570;Dbxref=Genbank:WP_000723710.1;Name=WP_000723710.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000723710.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2598777 2599724 . - . ID=gene2571;Name=SH04_RS12870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12870;old_locus_tag=SH04_12875 NZ_CP010443.1 Protein Homology CDS 2598777 2599724 . - 0 ID=cds2505;Parent=gene2571;Dbxref=Genbank:WP_000369231.1;Name=WP_000369231.1;gbkey=CDS;product=kinase;protein_id=WP_000369231.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2599729 2600565 . - . ID=gene2572;Name=SH04_RS12875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12875;old_locus_tag=SH04_12880 NZ_CP010443.1 Protein Homology CDS 2599729 2600565 . - 0 ID=cds2506;Parent=gene2572;Dbxref=Genbank:WP_000878893.1;Name=WP_000878893.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000878893.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2600586 2601629 . - . ID=gene2573;Name=SH04_RS12880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12880;old_locus_tag=SH04_12885 NZ_CP010443.1 Protein Homology CDS 2600586 2601629 . - 0 ID=cds2507;Parent=gene2573;Dbxref=Genbank:WP_000798110.1;Name=WP_000798110.1;gbkey=CDS;product=Zn-dependent NAD(P)-binding oxidoreductase;protein_id=WP_000798110.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2601646 2603025 . - . ID=gene2574;Name=SH04_RS12885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12885;old_locus_tag=SH04_12890 NZ_CP010443.1 Protein Homology CDS 2601646 2603025 . - 0 ID=cds2508;Parent=gene2574;Dbxref=Genbank:WP_000435292.1;Name=WP_000435292.1;gbkey=CDS;product=MFS sugar transporter membrane protein;protein_id=WP_000435292.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2603052 2604128 . - . ID=gene2575;Name=SH04_RS12890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12890;old_locus_tag=SH04_12895 NZ_CP010443.1 Protein Homology CDS 2603052 2604128 . - 0 ID=cds2509;Parent=gene2575;Dbxref=Genbank:WP_000645221.1;Name=WP_000645221.1;gbkey=CDS;product=Zn-dependent NAD(P)-binding oxidoreductase;protein_id=WP_000645221.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2604498 2604770 . - . ID=gene2576;Name=SH04_RS12895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12895;old_locus_tag=SH04_12900 NZ_CP010443.1 Protein Homology CDS 2604498 2604770 . - 0 ID=cds2510;Parent=gene2576;Dbxref=Genbank:WP_001300415.1;Name=WP_001300415.1;gbkey=CDS;product=DUF1315 domain-containing protein;protein_id=WP_001300415.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2604812 2605225 . - . ID=gene2577;Name=SH04_RS12900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12900;old_locus_tag=SH04_12905 NZ_CP010443.1 Protein Homology CDS 2604812 2605225 . - 0 ID=cds2511;Parent=gene2577;Dbxref=Genbank:WP_001284618.1;Name=WP_001284618.1;gbkey=CDS;product=peptide methionine sulfoxide reductase MsrB;protein_id=WP_001284618.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2605567 2606562 . + . ID=gene2578;Name=SH04_RS12905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12905;old_locus_tag=SH04_12910 NZ_CP010443.1 Protein Homology CDS 2605567 2606562 . + 0 ID=cds2512;Parent=gene2578;Dbxref=Genbank:WP_000153502.1;Name=WP_000153502.1;gbkey=CDS;product=glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_000153502.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2606646 2607530 . + . ID=gene2579;Name=SH04_RS12910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12910;old_locus_tag=SH04_12915 NZ_CP010443.1 Protein Homology CDS 2606646 2607530 . + 0 ID=cds2513;Parent=gene2579;Dbxref=Genbank:WP_001335909.1;Name=WP_001335909.1;gbkey=CDS;product=D-hexose-6-phosphate epimerase-like protein;protein_id=WP_001335909.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2607578 2608432 . - . ID=gene2580;Name=SH04_RS12915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12915;old_locus_tag=SH04_12920 NZ_CP010443.1 Protein Homology CDS 2607578 2608432 . - 0 ID=cds2514;Parent=gene2580;Dbxref=Genbank:WP_001186371.1;Name=WP_001186371.1;gbkey=CDS;product=aldo-keto reductase;protein_id=WP_001186371.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2608522 2609268 . - . ID=gene2581;Name=SH04_RS12920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12920;old_locus_tag=SH04_12925 NZ_CP010443.1 Protein Homology CDS 2608522 2609268 . - 0 ID=cds2515;Parent=gene2581;Dbxref=Genbank:WP_000163771.1;Name=WP_000163771.1;Note=scaffolding protein for the murein polymerase MrcB and the lytic transglycosylase MltA;gbkey=CDS;product=MltA-interacting protein;protein_id=WP_000163771.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2609704 2611638 . + . ID=gene2582;Name=SH04_RS12925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12925;old_locus_tag=SH04_12930 NZ_CP010443.1 Protein Homology CDS 2609704 2611638 . + 0 ID=cds2516;Parent=gene2582;Dbxref=Genbank:WP_001019882.1;Name=WP_001019882.1;gbkey=CDS;product=protein kinase endogenous substrate unidentified%3B autokinase;protein_id=WP_001019882.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2611751 2613034 . + . ID=gene2583;Name=SH04_RS12930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12930;old_locus_tag=SH04_12935 NZ_CP010443.1 Protein Homology CDS 2611751 2613034 . + 0 ID=cds2517;Parent=gene2583;Dbxref=Genbank:WP_000219687.1;Name=WP_000219687.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000219687.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2613322 2614656 . + . ID=gene2584;Name=SH04_RS12935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12935;old_locus_tag=SH04_12940 NZ_CP010443.1 Protein Homology CDS 2613322 2614656 . + 0 ID=cds2518;Parent=gene2584;Dbxref=Genbank:WP_000537206.1;Name=WP_000537206.1;gbkey=CDS;product=membrane protein;protein_id=WP_000537206.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2614837 2616327 . + . ID=gene2585;Name=SH04_RS12940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12940;old_locus_tag=SH04_12945 NZ_CP010443.1 Protein Homology CDS 2614837 2616327 . + 0 ID=cds2519;Parent=gene2585;Dbxref=Genbank:WP_000766132.1;Name=WP_000766132.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_000766132.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2616370 2616873 . + . ID=gene2586;Name=SH04_RS12945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12945;old_locus_tag=SH04_12950 NZ_CP010443.1 Protein Homology CDS 2616370 2616873 . + 0 ID=cds2520;Parent=gene2586;Dbxref=Genbank:WP_000138043.1;Name=WP_000138043.1;gbkey=CDS;product=aminoacyl-tRNA editing domain protein;protein_id=WP_000138043.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2616874 2617026 . - . ID=gene2587;Name=SH04_RS12950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12950;old_locus_tag=SH04_12955 NZ_CP010443.1 Protein Homology CDS 2616874 2617026 . - 0 ID=cds2521;Parent=gene2587;Dbxref=Genbank:WP_038432591.1;Name=WP_038432591.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_038432591.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2617148 2617594 . + . ID=gene2588;Name=SH04_RS12955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12955;old_locus_tag=SH04_12960 NZ_CP010443.1 Protein Homology CDS 2617148 2617594 . + 0 ID=cds2522;Parent=gene2588;Dbxref=Genbank:WP_000460707.1;Name=WP_000460707.1;gbkey=CDS;product=membrane protein;protein_id=WP_000460707.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2617551 2618372 . - . ID=gene2589;Name=SH04_RS12960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12960;old_locus_tag=SH04_12965 NZ_CP010443.1 Protein Homology CDS 2617551 2618372 . - 0 ID=cds2523;Parent=gene2589;Dbxref=Genbank:WP_000972248.1;Name=WP_000972248.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000972248.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2618469 2619650 . + . ID=gene2590;Name=SH04_RS12965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12965;old_locus_tag=SH04_12970 NZ_CP010443.1 Protein Homology CDS 2618469 2619650 . + 0 ID=cds2524;Parent=gene2590;Dbxref=Genbank:WP_000128491.1;Name=WP_000128491.1;gbkey=CDS;product=transporter;protein_id=WP_000128491.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2619705 2620052 . + . ID=gene2591;Name=SH04_RS12970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12970;old_locus_tag=SH04_12975 NZ_CP010443.1 Protein Homology CDS 2619705 2620052 . + 0 ID=cds2525;Parent=gene2591;Dbxref=Genbank:WP_001326526.1;Name=WP_001326526.1;gbkey=CDS;product=DUF488 domain-containing protein;protein_id=WP_001326526.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2620074 2620328 . - . ID=gene2592;Name=SH04_RS12975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12975;old_locus_tag=SH04_12980 NZ_CP010443.1 Protein Homology CDS 2620074 2620328 . - 0 ID=cds2526;Parent=gene2592;Dbxref=Genbank:WP_000691930.1;Name=WP_000691930.1;gbkey=CDS;product=DUF333 domain-containing protein;protein_id=WP_000691930.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2620511 2621536 . + . ID=gene2593;Name=SH04_RS12980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12980;old_locus_tag=SH04_12985 NZ_CP010443.1 Protein Homology CDS 2620511 2621536 . + 0 ID=cds2527;Parent=gene2593;Dbxref=Genbank:WP_001310896.1;Name=WP_001310896.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_001310896.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2621569 2621667 . + . ID=gene2594;Name=SH04_RS12985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12985;old_locus_tag=SH04_12990 NZ_CP010443.1 Protein Homology CDS 2621569 2621667 . + 0 ID=cds2528;Parent=gene2594;Dbxref=Genbank:WP_001219350.1;Name=WP_001219350.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001219350.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2621803 2622051 . - . ID=gene2595;Name=SH04_RS12990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12990;old_locus_tag=SH04_12995 NZ_CP010443.1 Protein Homology CDS 2621803 2622051 . - 0 ID=cds2529;Parent=gene2595;Dbxref=Genbank:WP_000512153.1;Name=WP_000512153.1;gbkey=CDS;product=membrane protein;protein_id=WP_000512153.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2622199 2622381 . - . ID=gene2596;Name=SH04_RS12995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS12995;old_locus_tag=SH04_13000 NZ_CP010443.1 Protein Homology CDS 2622199 2622381 . - 0 ID=cds2530;Parent=gene2596;Dbxref=Genbank:WP_000513737.1;Name=WP_000513737.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000513737.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2622385 2622744 . - . ID=gene2597;Name=SH04_RS13000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13000;old_locus_tag=SH04_13005 NZ_CP010443.1 Protein Homology CDS 2622385 2622744 . - 0 ID=cds2531;Parent=gene2597;Dbxref=Genbank:WP_000939317.1;Name=WP_000939317.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000939317.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2622917 2623555 . - . ID=gene2598;Name=SH04_RS13005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13005;old_locus_tag=SH04_13010 NZ_CP010443.1 Protein Homology CDS 2622917 2623555 . - 0 ID=cds2532;Parent=gene2598;Dbxref=Genbank:WP_000457206.1;Name=WP_000457206.1;gbkey=CDS;product=leucine efflux protein;protein_id=WP_000457206.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2623682 2624605 . - . ID=gene2599;Name=SH04_RS13010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13010;old_locus_tag=SH04_13015 NZ_CP010443.1 Protein Homology CDS 2623682 2624605 . - 0 ID=cds2533;Parent=gene2599;Dbxref=Genbank:WP_001061575.1;Name=WP_001061575.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001061575.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2624708 2625793 . + . ID=gene2600;Name=SH04_RS13015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13015;old_locus_tag=SH04_13020 NZ_CP010443.1 Protein Homology CDS 2624708 2625793 . + 0 ID=cds2534;Parent=gene2600;Dbxref=Genbank:WP_000978494.1;Name=WP_000978494.1;gbkey=CDS;product=malate dehydrogenase;protein_id=WP_000978494.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2625999 2627429 . + . ID=gene2601;Name=SH04_RS13020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13020;old_locus_tag=SH04_13025 NZ_CP010443.1 Protein Homology CDS 2625999 2627429 . + 0 ID=cds2535;Parent=gene2601;Dbxref=Genbank:WP_001326732.1;Name=WP_001326732.1;Note=member of the betaine%2C carnitine%2C choline transporter (BCCT) family%3B unknown function;gbkey=CDS;product=betaine/carnitine/choline BCCT transporter;protein_id=WP_001326732.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2627461 2628585 . + . ID=gene2602;Name=SH04_RS13025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13025;old_locus_tag=SH04_13030 NZ_CP010443.1 Protein Homology CDS 2627461 2628585 . + 0 ID=cds2536;Parent=gene2602;Dbxref=Genbank:WP_000067822.1;Name=WP_000067822.1;gbkey=CDS;product=ring hydroxylating dioxygenase subunit alpha;protein_id=WP_000067822.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2628641 2629606 . + . ID=gene2603;Name=SH04_RS13030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13030;old_locus_tag=SH04_13035 NZ_CP010443.1 Protein Homology CDS 2628641 2629606 . + 0 ID=cds2537;Parent=gene2603;Dbxref=Genbank:WP_001287026.1;Name=WP_001287026.1;gbkey=CDS;product=YeaWX dioxygenase subunit beta%2C reductase component;protein_id=WP_001287026.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2629660 2630775 . - . ID=gene2604;Name=SH04_RS13035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13035;old_locus_tag=SH04_13040 NZ_CP010443.1 Protein Homology CDS 2629660 2630775 . - 0 ID=cds2538;Parent=gene2604;Dbxref=Genbank:WP_001307844.1;Name=WP_001307844.1;gbkey=CDS;product=ribonuclease D;protein_id=WP_001307844.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2630857 2632575 . - . ID=gene2605;Name=SH04_RS13040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13040;old_locus_tag=SH04_13045 NZ_CP010443.1 Protein Homology CDS 2630857 2632575 . - 0 ID=cds2539;Parent=gene2605;Dbxref=Genbank:WP_001295492.1;Name=WP_001295492.1;Note=Activates fatty acids by binding to coenzyme A;gbkey=CDS;product=long-chain fatty acid--CoA ligase;protein_id=WP_001295492.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2632747 2633328 . - . ID=gene2606;Name=SH04_RS13045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13045;old_locus_tag=SH04_13050 NZ_CP010443.1 Protein Homology CDS 2632747 2633328 . - 0 ID=cds2540;Parent=gene2606;Dbxref=Genbank:WP_000290576.1;Name=WP_000290576.1;gbkey=CDS;product=Slp family lipoprotein%2C RpoE-regulated;protein_id=WP_000290576.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2633368 2634063 . - . ID=gene2607;Name=SH04_RS13050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13050;old_locus_tag=SH04_13055 NZ_CP010443.1 Protein Homology CDS 2633368 2634063 . - 0 ID=cds2541;Parent=gene2607;Dbxref=Genbank:WP_001220966.1;Name=WP_001220966.1;gbkey=CDS;product=tRNA threonylcarbamoyladenosine biosynthesis protein TsaB;protein_id=WP_001220966.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2634121 2636031 . - . ID=gene2608;Name=SH04_RS13055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13055;old_locus_tag=SH04_13060 NZ_CP010443.1 Protein Homology CDS 2634121 2636031 . - 0 ID=cds2542;Parent=gene2608;Dbxref=Genbank:WP_038432595.1;Name=WP_038432595.1;gbkey=CDS;product=ATP-dependent helicase;protein_id=WP_038432595.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2636163 2636507 . + . ID=gene2609;Name=SH04_RS13060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13060;old_locus_tag=SH04_13065 NZ_CP010443.1 Protein Homology CDS 2636163 2636507 . + 0 ID=cds2543;Parent=gene2609;Dbxref=Genbank:WP_001295493.1;Name=WP_001295493.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295493.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2636929 2637228 . + . ID=gene2610;Name=SH04_RS13065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13065;old_locus_tag=SH04_13070 NZ_CP010443.1 Protein Homology CDS 2636929 2637228 . + 0 ID=cds2544;Parent=gene2610;Dbxref=Genbank:WP_001111995.1;Name=WP_001111995.1;gbkey=CDS;product=DUF1889 domain-containing protein;protein_id=WP_001111995.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2637348 2637527 . - . ID=gene2611;Name=SH04_RS13070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13070;old_locus_tag=SH04_13075 NZ_CP010443.1 Protein Homology CDS 2637348 2637527 . - 0 ID=cds2545;Parent=gene2611;Dbxref=Genbank:WP_000457334.1;Name=WP_000457334.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000457334.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2637601 2638962 . + . ID=gene2612;Name=pabB;gbkey=Gene;gene=pabB;gene_biotype=protein_coding;locus_tag=SH04_RS13075;old_locus_tag=SH04_13080 NZ_CP010443.1 Protein Homology CDS 2637601 2638962 . + 0 ID=cds2546;Parent=gene2612;Dbxref=Genbank:WP_000855022.1;Name=WP_000855022.1;Note=para-aminobenzoate synthase component 1%3B catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and L-glutamine;gbkey=CDS;gene=pabB;product=aminodeoxychorismate synthase component I;protein_id=WP_000855022.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2638966 2639544 . + . ID=gene2613;Name=SH04_RS13080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13080;old_locus_tag=SH04_13085 NZ_CP010443.1 Protein Homology CDS 2638966 2639544 . + 0 ID=cds2547;Parent=gene2613;Dbxref=Genbank:WP_000456715.1;Name=WP_000456715.1;gbkey=CDS;product=CoA pyrophosphohydrolase weak 3-phosphohydroxypyruvate phosphatase;protein_id=WP_000456715.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2639728 2641092 . + . ID=gene2614;Name=SH04_RS13085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13085;old_locus_tag=SH04_13090 NZ_CP010443.1 Protein Homology CDS 2639728 2641092 . + 0 ID=cds2548;Parent=gene2614;Dbxref=Genbank:WP_000624298.1;Name=WP_000624298.1;Note=catalyzes the formation of pyruvate from serine;gbkey=CDS;product=L-serine dehydratase 1;protein_id=WP_000624298.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2641223 2642821 . + . ID=gene2615;Name=SH04_RS13090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13090;old_locus_tag=SH04_13095 NZ_CP010443.1 Protein Homology CDS 2641223 2642821 . + 0 ID=cds2549;Parent=gene2615;Dbxref=Genbank:WP_001295494.1;Name=WP_001295494.1;gbkey=CDS;product=cyclic-di-GMP phosphodiesterase;protein_id=WP_001295494.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2642825 2644381 . - . ID=gene2616;Name=SH04_RS13095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13095;old_locus_tag=SH04_13100 NZ_CP010443.1 Protein Homology CDS 2642825 2644381 . - 0 ID=cds2550;Parent=gene2616;Dbxref=Genbank:WP_000394983.1;Name=WP_000394983.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000394983.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2644369 2644578 . - . ID=gene2617;Name=SH04_RS13100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13100;old_locus_tag=SH04_13105 NZ_CP010443.1 Protein Homology CDS 2644369 2644578 . - 0 ID=cds2551;Parent=gene2617;Dbxref=Genbank:WP_001306763.1;Name=WP_001306763.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001306763.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2644844 2645815 . + . ID=gene2618;Name=SH04_RS13105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13105;old_locus_tag=SH04_13110 NZ_CP010443.1 Protein Homology CDS 2644844 2645815 . + 0 ID=cds2552;Parent=gene2618;Dbxref=Genbank:WP_000150543.1;Name=WP_000150543.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B subunit IIA transfers a phosphoryl group to subunit IIB%3B subunit IIB transfers the phosphoryl group to the substrate;gbkey=CDS;product=PTS mannose EIIAB component;protein_id=WP_000150543.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2645878 2646678 . + . ID=gene2619;Name=SH04_RS13110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13110;old_locus_tag=SH04_13115 NZ_CP010443.1 Protein Homology CDS 2645878 2646678 . + 0 ID=cds2553;Parent=gene2619;Dbxref=Genbank:WP_000406926.1;Name=WP_000406926.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site;gbkey=CDS;product=mannose permease IIC component;protein_id=WP_000406926.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2646691 2647542 . + . ID=gene2620;Name=SH04_RS13115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13115;old_locus_tag=SH04_13120 NZ_CP010443.1 Protein Homology CDS 2646691 2647542 . + 0 ID=cds2554;Parent=gene2620;Dbxref=Genbank:WP_000228655.1;Name=WP_000228655.1;Note=hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IID with IIC forms the translocation channel;gbkey=CDS;product=mannose permease IID component;protein_id=WP_000228655.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2647597 2648055 . + . ID=gene2621;Name=SH04_RS13120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13120;old_locus_tag=SH04_13125 NZ_CP010443.1 Protein Homology CDS 2647597 2648055 . + 0 ID=cds2555;Parent=gene2621;Dbxref=Genbank:WP_000156255.1;Name=WP_000156255.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000156255.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2648242 2648487 . + . ID=gene2622;Name=SH04_RS13125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13125;old_locus_tag=SH04_13130 NZ_CP010443.1 Protein Homology CDS 2648242 2648487 . + 0 ID=cds2556;Parent=gene2622;Dbxref=Genbank:WP_012602006.1;Name=WP_012602006.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012602006.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2648484 2649050 . + . ID=gene2623;Name=SH04_RS13130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13130;old_locus_tag=SH04_13135 NZ_CP010443.1 Protein Homology CDS 2648484 2649050 . + 0 ID=cds2557;Parent=gene2623;Dbxref=Genbank:WP_001296134.1;Name=WP_001296134.1;Note=membrane protein YebN;gbkey=CDS;product=manganese efflux pump MntP;protein_id=WP_001296134.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2649047 2649856 . - . ID=gene2624;Name=rrmA;gbkey=Gene;gene=rrmA;gene_biotype=protein_coding;locus_tag=SH04_RS13135;old_locus_tag=SH04_13140 NZ_CP010443.1 Protein Homology CDS 2649047 2649856 . - 0 ID=cds2558;Parent=gene2624;Dbxref=Genbank:WP_000010115.1;Name=WP_000010115.1;Note=methylates the guanosine in position 745 of 23S rRNA%3B required for translation and cell growth;gbkey=CDS;gene=rrmA;product=23S rRNA (guanine(745)-N(1))-methyltransferase;protein_id=WP_000010115.1;transl_table=11 NZ_CP010443.1 cmsearch region 2649947 2650407 . - . ID=id147;Note=cspA;gbkey=misc_feature NZ_CP010443.1 RefSeq gene 2650022 2650231 . - . ID=gene2625;Name=SH04_RS13140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13140;old_locus_tag=SH04_13145 NZ_CP010443.1 Protein Homology CDS 2650022 2650231 . - 0 ID=cds2559;Parent=gene2625;Dbxref=Genbank:WP_001062678.1;Name=WP_001062678.1;gbkey=CDS;product=cold-shock protein CspC;protein_id=WP_001062678.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2650244 2650387 . - . ID=gene2626;Name=SH04_RS13145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13145;old_locus_tag=SH04_13150 NZ_CP010443.1 Protein Homology CDS 2650244 2650387 . - 0 ID=cds2560;Parent=gene2626;Dbxref=Genbank:WP_001295496.1;Name=WP_001295496.1;gbkey=CDS;product=DUF2527 domain-containing protein;protein_id=WP_001295496.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2650349 2650555 . + . ID=gene2627;Name=SH04_RS13150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13150;old_locus_tag=SH04_13155 NZ_CP010443.1 Protein Homology CDS 2650349 2650555 . + 0 ID=cds2561;Parent=gene2627;Dbxref=Genbank:WP_001308705.1;Name=WP_001308705.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001308705.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2651057 2651344 . - . ID=gene2628;Name=SH04_RS13155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13155;old_locus_tag=SH04_13160 NZ_CP010443.1 Protein Homology CDS 2651057 2651344 . - 0 ID=cds2562;Parent=gene2628;Dbxref=Genbank:WP_001006866.1;Name=WP_001006866.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001006866.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2651419 2651562 . - . ID=gene2629;Name=SH04_RS13160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13160;old_locus_tag=SH04_13165 NZ_CP010443.1 Protein Homology CDS 2651419 2651562 . - 0 ID=cds2563;Parent=gene2629;Dbxref=Genbank:WP_000714550.1;Name=WP_000714550.1;gbkey=CDS;product=PhoP family transcriptional regulator;protein_id=WP_000714550.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2651721 2651960 . + . ID=gene2630;Name=SH04_RS13165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13165;old_locus_tag=SH04_13170 NZ_CP010443.1 Protein Homology CDS 2651721 2651960 . + 0 ID=cds2564;Parent=gene2630;Dbxref=Genbank:WP_001211011.1;Name=WP_001211011.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001211011.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2652104 2652895 . - . ID=gene2631;Name=SH04_RS13170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13170;old_locus_tag=SH04_13175 NZ_CP010443.1 Protein Homology CDS 2652104 2652895 . - 0 ID=cds2565;Parent=gene2631;Dbxref=Genbank:WP_001262203.1;Name=WP_001262203.1;Note=regulates the genes involved in 2-keto-3-deoxy gluconate transport and catabolism;gbkey=CDS;product=transcriptional regulator KdgR;protein_id=WP_001262203.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2653072 2654445 . + . ID=gene2632;Name=SH04_RS13175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13175;old_locus_tag=SH04_13180 NZ_CP010443.1 Protein Homology CDS 2653072 2654445 . + 0 ID=cds2566;Parent=gene2632;Dbxref=Genbank:WP_001127216.1;Name=WP_001127216.1;gbkey=CDS;product=transporter;protein_id=WP_001127216.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2654491 2655372 . - . ID=gene2633;Name=SH04_RS13180;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS13180;pseudo=true NZ_CP010443.1 Protein Homology CDS 2654491 2655372 . - 0 ID=cds2567;Parent=gene2633;Note=metalloprotease;gbkey=CDS;product=heat-shock protein HtpX;pseudo=true;transl_except=(pos:complement(2654725..2654727)%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 2655564 2657612 . - . ID=gene2634;Name=SH04_RS13185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13185;old_locus_tag=SH04_13190 NZ_CP010443.1 Protein Homology CDS 2655564 2657612 . - 0 ID=cds2568;Parent=gene2634;Dbxref=Genbank:WP_001055791.1;Name=WP_001055791.1;Note=Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3;gbkey=CDS;product=tail-specific protease;protein_id=WP_001055791.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2657632 2658330 . - . ID=gene2635;Name=SH04_RS13190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13190;old_locus_tag=SH04_13195 NZ_CP010443.1 Protein Homology CDS 2657632 2658330 . - 0 ID=cds2569;Parent=gene2635;Dbxref=Genbank:WP_000431381.1;Name=WP_000431381.1;Note=affects solute and DNA transport through an unknown mechanism;gbkey=CDS;product=RNA chaperone ProQ;protein_id=WP_000431381.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2658427 2658924 . - . ID=gene2636;Name=SH04_RS13195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13195;old_locus_tag=SH04_13200 NZ_CP010443.1 Protein Homology CDS 2658427 2658924 . - 0 ID=cds2570;Parent=gene2636;Dbxref=Genbank:WP_001043877.1;Name=WP_001043877.1;gbkey=CDS;product=methionine-R-sulfoxide reductase;protein_id=WP_001043877.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2659054 2660337 . + . ID=gene2637;Name=SH04_RS13200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13200;old_locus_tag=SH04_13205 NZ_CP010443.1 Protein Homology CDS 2659054 2660337 . + 0 ID=cds2571;Parent=gene2637;Dbxref=Genbank:WP_001207282.1;Name=WP_001207282.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001207282.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2660306 2662939 . + . ID=gene2638;Name=SH04_RS13205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13205;old_locus_tag=SH04_13210 NZ_CP010443.1 Protein Homology CDS 2660306 2662939 . + 0 ID=cds2572;Parent=gene2638;Dbxref=Genbank:WP_001326728.1;Name=WP_001326728.1;gbkey=CDS;product=MCE domain protein;protein_id=WP_001326728.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2663019 2664458 . + . ID=gene2639;Name=yebU;gbkey=Gene;gene=yebU;gene_biotype=pseudogene;locus_tag=SH04_RS13210;pseudo=true NZ_CP010443.1 Protein Homology CDS 2663019 2664458 . + 0 ID=cds2573;Parent=gene2639;Note=in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA;gbkey=CDS;gene=yebU;product=RNA methyltransferase RsmF;pseudo=true;transl_except=(pos:2663418..2663420%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 2664576 2664812 . + . ID=gene2640;Name=SH04_RS13215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13215;old_locus_tag=SH04_13220 NZ_CP010443.1 Protein Homology CDS 2664576 2664812 . + 0 ID=cds2574;Parent=gene2640;Dbxref=Genbank:WP_001295499.1;Name=WP_001295499.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295499.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2664917 2665108 . + . ID=gene2641;Name=SH04_RS13220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13220;old_locus_tag=SH04_13225 NZ_CP010443.1 Protein Homology CDS 2664917 2665108 . + 0 ID=cds2575;Parent=gene2641;Dbxref=Genbank:WP_000457842.1;Name=WP_000457842.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000457842.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2665109 2665765 . - . ID=gene2642;Name=SH04_RS13225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13225;old_locus_tag=SH04_13230 NZ_CP010443.1 Protein Homology CDS 2665109 2665765 . - 0 ID=cds2576;Parent=gene2642;Dbxref=Genbank:WP_000812724.1;Name=WP_000812724.1;gbkey=CDS;product=serine/threonine-protein phosphatase 1;protein_id=WP_000812724.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2665990 2666076 . - . ID=gene2643;Name=SH04_RS13230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13230;old_locus_tag=SH04_13235 NZ_CP010443.1 Protein Homology CDS 2665990 2666076 . - 0 ID=cds2577;Parent=gene2643;Dbxref=Genbank:WP_000214009.1;Name=WP_000214009.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000214009.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2666161 2666499 . - . ID=gene2644;Name=SH04_RS13235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13235;old_locus_tag=SH04_13240 NZ_CP010443.1 Protein Homology CDS 2666161 2666499 . - 0 ID=cds2578;Parent=gene2644;Dbxref=Genbank:WP_001380520.1;Name=WP_001380520.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001380520.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2666515 2667387 . - . ID=gene2645;Name=SH04_RS13240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13240;old_locus_tag=SH04_13245 NZ_CP010443.1 Protein Homology CDS 2666515 2667387 . - 0 ID=cds2579;Parent=gene2645;Dbxref=Genbank:WP_000879289.1;Name=WP_000879289.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000879289.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2667391 2667765 . - . ID=gene2646;Name=SH04_RS13245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13245;old_locus_tag=SH04_13250 NZ_CP010443.1 Protein Homology CDS 2667391 2667765 . - 0 ID=cds2580;Parent=gene2646;Dbxref=Genbank:WP_000168747.1;Name=WP_000168747.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000168747.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2667904 2668134 . + . ID=gene2647;Name=SH04_RS13250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13250;old_locus_tag=SH04_13255 NZ_CP010443.1 Protein Homology CDS 2667904 2668134 . + 0 ID=cds2581;Parent=gene2647;Dbxref=Genbank:WP_000916763.1;Name=WP_000916763.1;gbkey=CDS;product=DNA polymerase III subunit theta;protein_id=WP_000916763.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2668236 2668892 . + . ID=gene2648;Name=SH04_RS13255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13255;old_locus_tag=SH04_13260 NZ_CP010443.1 Protein Homology CDS 2668236 2668892 . + 0 ID=cds2582;Parent=gene2648;Dbxref=Genbank:WP_000011658.1;Name=WP_000011658.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000011658.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2668916 2669578 . + . ID=gene2649;Name=SH04_RS13260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13260;old_locus_tag=SH04_13265 NZ_CP010443.1 Protein Homology CDS 2668916 2669578 . + 0 ID=cds2583;Parent=gene2649;Dbxref=Genbank:WP_000944256.1;Name=WP_000944256.1;Note=3'-5' exonuclease activity on single or double-strand DNA;gbkey=CDS;product=exodeoxyribonuclease 10;protein_id=WP_000944256.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2669575 2671635 . - . ID=gene2650;Name=SH04_RS13265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13265;old_locus_tag=SH04_13270 NZ_CP010443.1 Protein Homology CDS 2669575 2671635 . - 0 ID=cds2584;Parent=gene2650;Dbxref=Genbank:WP_000936927.1;Name=WP_000936927.1;Note=PtrB%3B oligopeptidase that cleaves peptide bonds following arginine and lysine residues;gbkey=CDS;product=protease 2;protein_id=WP_000936927.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2671844 2672503 . - . ID=gene2651;Name=SH04_RS13270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13270;old_locus_tag=SH04_13275 NZ_CP010443.1 Protein Homology CDS 2671844 2672503 . - 0 ID=cds2585;Parent=gene2651;Dbxref=Genbank:WP_000024757.1;Name=WP_000024757.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000024757.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2672563 2672673 . + . ID=gene2652;Name=SH04_RS13275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13275;old_locus_tag=SH04_13280 NZ_CP010443.1 Protein Homology CDS 2672563 2672673 . + 0 ID=cds2586;Parent=gene2652;Dbxref=Genbank:WP_000275187.1;Name=WP_000275187.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000275187.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2672830 2673186 . - . ID=gene2653;Name=SH04_RS13280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13280;old_locus_tag=SH04_13285 NZ_CP010443.1 Protein Homology CDS 2672830 2673186 . - 0 ID=cds2587;Parent=gene2653;Dbxref=Genbank:WP_001350516.1;Name=WP_001350516.1;Note=secreted protein%3B unknown function;gbkey=CDS;product=hypothetical protein;protein_id=WP_001350516.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2673253 2673543 . - . ID=gene2654;Name=SH04_RS13285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13285;old_locus_tag=SH04_13290 NZ_CP010443.1 Protein Homology CDS 2673253 2673543 . - 0 ID=cds2588;Parent=gene2654;Dbxref=Genbank:WP_000257738.1;Name=WP_000257738.1;gbkey=CDS;product=DNA damage-inducible protein;protein_id=WP_000257738.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2673677 2674855 . + . ID=gene2655;Name=SH04_RS13290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13290;old_locus_tag=SH04_13295 NZ_CP010443.1 Protein Homology CDS 2673677 2674855 . + 0 ID=cds2589;Parent=gene2655;Dbxref=Genbank:WP_000173484.1;Name=WP_000173484.1;gbkey=CDS;product=phosphoribosylglycinamide formyltransferase 2;protein_id=WP_000173484.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2674911 2675552 . - . ID=gene2656;Name=SH04_RS13295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13295;old_locus_tag=SH04_13300 NZ_CP010443.1 Protein Homology CDS 2674911 2675552 . - 0 ID=cds2590;Parent=gene2656;Dbxref=Genbank:WP_000800512.1;Name=WP_000800512.1;Note=catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate%3B or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate;gbkey=CDS;product=KHG/KDPG aldolase;protein_id=WP_000800512.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2675589 2677400 . - . ID=gene2657;Name=SH04_RS13300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13300;old_locus_tag=SH04_13305 NZ_CP010443.1 Protein Homology CDS 2675589 2677400 . - 0 ID=cds2591;Parent=gene2657;Dbxref=Genbank:WP_001069467.1;Name=WP_001069467.1;Note=catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate;gbkey=CDS;product=phosphogluconate dehydratase;protein_id=WP_001069467.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2677635 2679110 . - . ID=gene2658;Name=SH04_RS13305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13305;old_locus_tag=SH04_13310 NZ_CP010443.1 Protein Homology CDS 2677635 2679110 . - 0 ID=cds2592;Parent=gene2658;Dbxref=Genbank:WP_000301727.1;Name=WP_000301727.1;Note=catalyzes the formation of D-glucono-1%2C5-lactone 6-phosphate from D-glucose 6-phosphate;gbkey=CDS;product=glucose-6-phosphate 1-dehydrogenase;protein_id=WP_000301727.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2679276 2679425 . - . ID=gene2659;Name=SH04_RS13310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13310;old_locus_tag=SH04_13315 NZ_CP010443.1 Protein Homology CDS 2679276 2679425 . - 0 ID=cds2593;Parent=gene2659;Dbxref=Genbank:WP_000155622.1;Name=WP_000155622.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000155622.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2679448 2680317 . + . ID=gene2660;Name=SH04_RS13315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13315;old_locus_tag=SH04_13320 NZ_CP010443.1 Protein Homology CDS 2679448 2680317 . + 0 ID=cds2594;Parent=gene2660;Dbxref=Genbank:WP_001056706.1;Name=WP_001056706.1;Note=Represses the expression of the zwf%2C eda%2C glp and gap;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001056706.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2680445 2681887 . + . ID=gene2661;Name=SH04_RS13320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13320;old_locus_tag=SH04_13325 NZ_CP010443.1 Protein Homology CDS 2680445 2681887 . + 0 ID=cds2595;Parent=gene2661;Dbxref=Genbank:WP_000091148.1;Name=WP_000091148.1;Note=catalyzes the formation of phosphoenolpyruvate from pyruvate;gbkey=CDS;product=pyruvate kinase II;protein_id=WP_000091148.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2682018 2682989 . - . ID=gene2662;Name=SH04_RS13325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13325;old_locus_tag=SH04_13330 NZ_CP010443.1 Protein Homology CDS 2682018 2682989 . - 0 ID=cds2596;Parent=gene2662;Dbxref=Genbank:WP_000448381.1;Name=WP_000448381.1;Note=Transfers myristate or laurate%2C activated on ACP%2C to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA;gbkey=CDS;product=lipid A biosynthesis myristoyltransferase;protein_id=WP_000448381.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2683109 2684431 . - . ID=gene2663;Name=SH04_RS13330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13330;old_locus_tag=SH04_13335 NZ_CP010443.1 Protein Homology CDS 2683109 2684431 . - 0 ID=cds2597;Parent=gene2663;Dbxref=Genbank:WP_001184045.1;Name=WP_001184045.1;gbkey=CDS;product=murein DD-endopeptidase MepM;protein_id=WP_001184045.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2684447 2685379 . - . ID=gene2664;Name=znuA;gbkey=Gene;gene=znuA;gene_biotype=protein_coding;gene_synonym=yebL;locus_tag=SH04_RS13335;old_locus_tag=SH04_13340 NZ_CP010443.1 Protein Homology CDS 2684447 2685379 . - 0 ID=cds2598;Parent=gene2664;Dbxref=Genbank:WP_001300644.1;Name=WP_001300644.1;Note=involved in transport of zinc(II) with ZnuA and C;gbkey=CDS;gene=znuA;product=zinc uptake system protein ZnuA;protein_id=WP_001300644.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2685458 2686213 . + . ID=gene2665;Name=znuC;gbkey=Gene;gene=znuC;gene_biotype=protein_coding;gene_synonym=yebM;locus_tag=SH04_RS13340;old_locus_tag=SH04_13345 NZ_CP010443.1 Protein Homology CDS 2685458 2686213 . + 0 ID=cds2599;Parent=gene2665;Dbxref=Genbank:WP_000202996.1;Name=WP_000202996.1;Note=involved in transport of zinc(II) with ZnuA and C;gbkey=CDS;gene=znuC;product=Mn2+/Zn2+ABC transporter ATP-binding protein;protein_id=WP_000202996.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2686210 2686995 . + . ID=gene2666;Name=znuB;gbkey=Gene;gene=znuB;gene_biotype=protein_coding;gene_synonym=yebI;locus_tag=SH04_RS13345;old_locus_tag=SH04_13350 NZ_CP010443.1 Protein Homology CDS 2686210 2686995 . + 0 ID=cds2600;Parent=gene2666;Dbxref=Genbank:WP_000571480.1;Name=WP_000571480.1;Note=involved in transport of zinc(II) with ZnuA and C;gbkey=CDS;gene=znuB;product=zinc uptake system membrane protein ZnuB;protein_id=WP_000571480.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2687142 2688152 . - . ID=gene2667;Name=SH04_RS13350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13350;old_locus_tag=SH04_13355 NZ_CP010443.1 Protein Homology CDS 2687142 2688152 . - 0 ID=cds2601;Parent=gene2667;Dbxref=Genbank:WP_000568519.1;Name=WP_000568519.1;gbkey=CDS;product=Holliday junction DNA helicase RuvB;protein_id=WP_000568519.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2688161 2688772 . - . ID=gene2668;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;locus_tag=SH04_RS13355;old_locus_tag=SH04_13360 NZ_CP010443.1 Protein Homology CDS 2688161 2688772 . - 0 ID=cds2602;Parent=gene2668;Dbxref=Genbank:WP_000580323.1;Name=WP_000580323.1;Note=plays an essential role in ATP-dependent branch migration of the Holliday junction;gbkey=CDS;gene=ruvA;product=Holliday junction DNA helicase RuvA;protein_id=WP_000580323.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2689047 2689649 . + . ID=gene2669;Name=SH04_RS13360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13360;old_locus_tag=SH04_13365 NZ_CP010443.1 Protein Homology CDS 2689047 2689649 . + 0 ID=cds2603;Parent=gene2669;Dbxref=Genbank:WP_001024932.1;Name=WP_001024932.1;gbkey=CDS;product=DUF830 domain-containing protein;protein_id=WP_001024932.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2689651 2690172 . - . ID=gene2670;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;locus_tag=SH04_RS13365;old_locus_tag=SH04_13370 NZ_CP010443.1 Protein Homology CDS 2689651 2690172 . - 0 ID=cds2604;Parent=gene2670;Dbxref=Genbank:WP_001295503.1;Name=WP_001295503.1;Note=endonuclease%3B resolves Holliday structures%3B forms a complex of RuvABC%3B the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration%3B RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity;gbkey=CDS;gene=ruvC;product=crossover junction endodeoxyribonuclease RuvC;protein_id=WP_001295503.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2690207 2690947 . - . ID=gene2671;Name=SH04_RS13370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13370;old_locus_tag=SH04_13375 NZ_CP010443.1 Protein Homology CDS 2690207 2690947 . - 0 ID=cds2605;Parent=gene2671;Dbxref=Genbank:WP_000907248.1;Name=WP_000907248.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000907248.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2690976 2691458 . - . ID=gene2672;Name=nudB;gbkey=Gene;gene=nudB;gene_biotype=protein_coding;locus_tag=SH04_RS13375;old_locus_tag=SH04_13380 NZ_CP010443.1 Protein Homology CDS 2690976 2691458 . - 0 ID=cds2606;Parent=gene2672;Dbxref=Genbank:WP_001289128.1;Name=WP_001289128.1;Note=catalyzes the formation of dihydroneopterin phosphate from dihydroneopterin triphosphate;gbkey=CDS;gene=nudB;product=dihydroneopterin triphosphate pyrophosphatase;protein_id=WP_001289128.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2691546 2693318 . - . ID=gene2673;Name=SH04_RS13380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13380;old_locus_tag=SH04_13385 NZ_CP010443.1 Protein Homology CDS 2691546 2693318 . - 0 ID=cds2607;Parent=gene2673;Dbxref=Genbank:WP_001258678.1;Name=WP_001258678.1;gbkey=CDS;product=aspartate--tRNA ligase;protein_id=WP_001258678.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2693628 2694194 . + . ID=gene2674;Name=SH04_RS13385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13385;old_locus_tag=SH04_13390 NZ_CP010443.1 Protein Homology CDS 2693628 2694194 . + 0 ID=cds2608;Parent=gene2674;Dbxref=Genbank:WP_000891621.1;Name=WP_000891621.1;gbkey=CDS;product=isochorismatase;protein_id=WP_000891621.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2694191 2695009 . + . ID=gene2675;Name=SH04_RS13390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13390;old_locus_tag=SH04_13395 NZ_CP010443.1 Protein Homology CDS 2694191 2695009 . + 0 ID=cds2609;Parent=gene2675;Dbxref=Genbank:WP_000639274.1;Name=WP_000639274.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000639274.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2695062 2695457 . + . ID=gene2676;Name=SH04_RS13395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13395;old_locus_tag=SH04_13400 NZ_CP010443.1 Protein Homology CDS 2695062 2695457 . + 0 ID=cds2610;Parent=gene2676;Dbxref=Genbank:WP_000252980.1;Name=WP_000252980.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000252980.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2695498 2696241 . + . ID=gene2677;Name=SH04_RS13400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13400;old_locus_tag=SH04_13405 NZ_CP010443.1 Protein Homology CDS 2695498 2696241 . + 0 ID=cds2611;Parent=gene2677;Dbxref=Genbank:WP_000019590.1;Name=WP_000019590.1;Note=catalyzes the conversion of 5-methoxyuridine to uridine-5-oxyacetic acid in tRNA;gbkey=CDS;product=tRNA (cmo5U34)-methyltransferase;protein_id=WP_000019590.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2696238 2697209 . + . ID=gene2678;Name=SH04_RS13405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13405;old_locus_tag=SH04_13410 NZ_CP010443.1 Protein Homology CDS 2696238 2697209 . + 0 ID=cds2612;Parent=gene2678;Dbxref=Genbank:WP_000564725.1;Name=WP_000564725.1;Note=catalyzes the conversion of 5-hydroxyuridine to 5-methoxyuridine in tRNA;gbkey=CDS;product=tRNA (mo5U34)-methyltransferase;protein_id=WP_000564725.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2697374 2699803 . - . ID=gene2679;Name=SH04_RS13410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13410;old_locus_tag=SH04_13415 NZ_CP010443.1 Protein Homology CDS 2697374 2699803 . - 0 ID=cds2613;Parent=gene2679;Dbxref=Genbank:WP_000176781.1;Name=WP_000176781.1;Note=catalyzes the reduction of trimethylamine-N-oxide to form trimethylamine;gbkey=CDS;product=Trimethylamine-N-oxide reductase 2;protein_id=WP_000176781.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2699828 2700928 . - . ID=gene2680;Name=SH04_RS13415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13415;old_locus_tag=SH04_13420 NZ_CP010443.1 Protein Homology CDS 2699828 2700928 . - 0 ID=cds2614;Parent=gene2680;Dbxref=Genbank:WP_001214331.1;Name=WP_001214331.1;gbkey=CDS;product=cytochrome c-type protein TorY;protein_id=WP_001214331.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2701316 2702062 . - . ID=gene2681;Name=SH04_RS13420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13420;old_locus_tag=SH04_13425 NZ_CP010443.1 Protein Homology CDS 2701316 2702062 . - 0 ID=cds2615;Parent=gene2681;Dbxref=Genbank:WP_001185741.1;Name=WP_001185741.1;gbkey=CDS;product=copper homeostasis protein CutC;protein_id=WP_001185741.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2702076 2702642 . - . ID=gene2682;Name=SH04_RS13425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13425;old_locus_tag=SH04_13430 NZ_CP010443.1 Protein Homology CDS 2702076 2702642 . - 0 ID=cds2616;Parent=gene2682;Dbxref=Genbank:WP_001326725.1;Name=WP_001326725.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001326725.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2702858 2704591 . + . ID=gene2683;Name=SH04_RS13430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13430;old_locus_tag=SH04_13435 NZ_CP010443.1 Protein Homology CDS 2702858 2704591 . + 0 ID=cds2617;Parent=gene2683;Dbxref=Genbank:WP_001025322.1;Name=WP_001025322.1;gbkey=CDS;product=arginine--tRNA ligase;protein_id=WP_001025322.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2704768 2705256 . + . ID=gene2684;Name=SH04_RS13435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13435;old_locus_tag=SH04_13440 NZ_CP010443.1 Protein Homology CDS 2704768 2705256 . + 0 ID=cds2618;Parent=gene2684;Dbxref=Genbank:WP_001299676.1;Name=WP_001299676.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001299676.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2705376 2705768 . - . ID=gene2685;Name=SH04_RS13440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13440;old_locus_tag=SH04_13445 NZ_CP010443.1 Protein Homology CDS 2705376 2705768 . - 0 ID=cds2619;Parent=gene2685;Dbxref=Genbank:WP_001259583.1;Name=WP_001259583.1;gbkey=CDS;product=flagellar biosynthesis protein FlhE;protein_id=WP_001259583.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2705768 2707846 . - . ID=gene2686;Name=SH04_RS13445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13445;old_locus_tag=SH04_13450 NZ_CP010443.1 Protein Homology CDS 2705768 2707846 . - 0 ID=cds2620;Parent=gene2686;Dbxref=Genbank:WP_000066951.1;Name=WP_000066951.1;gbkey=CDS;product=flagellar biosynthesis protein FlhA;protein_id=WP_000066951.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2707839 2708987 . - . ID=gene2687;Name=flhB;gbkey=Gene;gene=flhB;gene_biotype=protein_coding;locus_tag=SH04_RS13450;old_locus_tag=SH04_13455 NZ_CP010443.1 Protein Homology CDS 2707839 2708987 . - 0 ID=cds2621;Parent=gene2687;Dbxref=Genbank:WP_001278954.1;Name=WP_001278954.1;Note=membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export;gbkey=CDS;gene=flhB;product=flagellar biosynthetic protein FlhB;protein_id=WP_001278954.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2709189 2709833 . - . ID=gene2688;Name=SH04_RS13455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13455;old_locus_tag=SH04_13460 NZ_CP010443.1 Protein Homology CDS 2709189 2709833 . - 0 ID=cds2622;Parent=gene2688;Dbxref=Genbank:WP_000983609.1;Name=WP_000983609.1;Note=cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation;gbkey=CDS;product=protein phosphatase CheZ;protein_id=WP_000983609.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2709844 2710233 . - . ID=gene2689;Name=SH04_RS13460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13460;old_locus_tag=SH04_13465 NZ_CP010443.1 Protein Homology CDS 2709844 2710233 . - 0 ID=cds2623;Parent=gene2689;Dbxref=Genbank:WP_000763867.1;Name=WP_000763867.1;Note=chemotaxis regulator that%2C when phosphorylated%2C interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble;gbkey=CDS;product=chemotaxis protein CheY;protein_id=WP_000763867.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2710248 2711297 . - . ID=gene2690;Name=SH04_RS13465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13465;old_locus_tag=SH04_13470 NZ_CP010443.1 Protein Homology CDS 2710248 2711297 . - 0 ID=cds2624;Parent=gene2690;Dbxref=Genbank:WP_000036361.1;Name=WP_000036361.1;Note=regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins;gbkey=CDS;product=two-component system protein-glutamate methylesterase response regulator;protein_id=WP_000036361.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2711300 2712160 . - . ID=gene2691;Name=SH04_RS13470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13470;old_locus_tag=SH04_13475 NZ_CP010443.1 Protein Homology CDS 2711300 2712160 . - 0 ID=cds2625;Parent=gene2691;Dbxref=Genbank:WP_000204337.1;Name=WP_000204337.1;Note=methylates the MCP;gbkey=CDS;product=chemotaxis protein methyltransferase;protein_id=WP_000204337.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2712179 2713780 . - . ID=gene2692;Name=SH04_RS13475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13475;old_locus_tag=SH04_13480 NZ_CP010443.1 Protein Homology CDS 2712179 2713780 . - 0 ID=cds2626;Parent=gene2692;Dbxref=Genbank:WP_000483239.1;Name=WP_000483239.1;Note=mediates taxis toward dipeptides;gbkey=CDS;product=methyl-accepting chemotaxis protein IV;protein_id=WP_000483239.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2713826 2715487 . - . ID=gene2693;Name=SH04_RS13480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13480;old_locus_tag=SH04_13485 NZ_CP010443.1 Protein Homology CDS 2713826 2715487 . - 0 ID=cds2627;Parent=gene2693;Dbxref=Genbank:WP_001297437.1;Name=WP_001297437.1;Note=serine sensor receptor;gbkey=CDS;product=methyl-accepting chemotaxis protein II;protein_id=WP_001297437.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2715632 2716135 . - . ID=gene2694;Name=SH04_RS13485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13485;old_locus_tag=SH04_13490 NZ_CP010443.1 Protein Homology CDS 2715632 2716135 . - 0 ID=cds2628;Parent=gene2694;Dbxref=Genbank:WP_000147302.1;Name=WP_000147302.1;gbkey=CDS;product=chemotaxis protein CheW;protein_id=WP_000147302.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2716156 2718114 . - . ID=gene2695;Name=SH04_RS13490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13490;old_locus_tag=SH04_13495 NZ_CP010443.1 Protein Homology CDS 2716156 2718114 . - 0 ID=cds2629;Parent=gene2695;Dbxref=Genbank:WP_000355059.1;Name=WP_000355059.1;gbkey=CDS;product=chemotaxis protein CheA;protein_id=WP_000355059.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2718125 2719051 . - . ID=gene2696;Name=motB;gbkey=Gene;gene=motB;gene_biotype=protein_coding;locus_tag=SH04_RS13495;old_locus_tag=SH04_13500 NZ_CP010443.1 Protein Homology CDS 2718125 2719051 . - 0 ID=cds2630;Parent=gene2696;Dbxref=Genbank:WP_000795630.1;Name=WP_000795630.1;Note=with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine;gbkey=CDS;gene=motB;product=motility protein B;protein_id=WP_000795630.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2719048 2719935 . - . ID=gene2697;Name=SH04_RS13500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13500;old_locus_tag=SH04_13505 NZ_CP010443.1 Protein Homology CDS 2719048 2719935 . - 0 ID=cds2631;Parent=gene2697;Dbxref=Genbank:WP_000906340.1;Name=WP_000906340.1;Note=With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine;gbkey=CDS;product=motility protein A;protein_id=WP_000906340.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2720062 2720640 . - . ID=gene2698;Name=SH04_RS13505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13505;old_locus_tag=SH04_13510 NZ_CP010443.1 Protein Homology CDS 2720062 2720640 . - 0 ID=cds2632;Parent=gene2698;Dbxref=Genbank:WP_001291603.1;Name=WP_001291603.1;Note=With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems;gbkey=CDS;product=flagellar transcriptional regulator FlhC;protein_id=WP_001291603.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2720643 2720993 . - . ID=gene2699;Name=SH04_RS13510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13510;old_locus_tag=SH04_13515 NZ_CP010443.1 Protein Homology CDS 2720643 2720993 . - 0 ID=cds2633;Parent=gene2699;Dbxref=Genbank:WP_001295647.1;Name=WP_001295647.1;Note=with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems;gbkey=CDS;product=flagellar transcriptional regulator FlhD;protein_id=WP_001295647.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2721773 2722201 . + . ID=gene2700;Name=SH04_RS13515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13515;old_locus_tag=SH04_13520 NZ_CP010443.1 Protein Homology CDS 2721773 2722201 . + 0 ID=cds2634;Parent=gene2700;Dbxref=Genbank:WP_000122416.1;Name=WP_000122416.1;Note=ppGpp-dependent%3B membrane-associated%2C stress protein produced under conditions of nutrient deprivation%2C osmotic shock and oxidative stress;gbkey=CDS;product=universal stress protein C;protein_id=WP_000122416.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2722208 2723632 . - . ID=gene2701;Name=SH04_RS13520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13520;old_locus_tag=SH04_13525 NZ_CP010443.1 Protein Homology CDS 2722208 2723632 . - 0 ID=cds2635;Parent=gene2701;Dbxref=Genbank:WP_001295646.1;Name=WP_001295646.1;gbkey=CDS;product=alpha%2Calpha-trehalose-phosphate synthase [UDP-forming];protein_id=WP_001295646.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2723607 2724407 . - . ID=gene2702;Name=SH04_RS13525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13525;old_locus_tag=SH04_13530 NZ_CP010443.1 Protein Homology CDS 2723607 2724407 . - 0 ID=cds2636;Parent=gene2702;Dbxref=Genbank:WP_001295645.1;Name=WP_001295645.1;Note=biosynthetic%3B catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate%3B expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature;gbkey=CDS;product=trehalose-6-phosphate phosphatase;protein_id=WP_001295645.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2724574 2725560 . - . ID=gene2703;Name=araH;gbkey=Gene;gene=araH;gene_biotype=protein_coding;locus_tag=SH04_RS13530;old_locus_tag=SH04_13535 NZ_CP010443.1 Protein Homology CDS 2724574 2725560 . - 0 ID=cds2637;Parent=gene2703;Dbxref=Genbank:WP_000100205.1;Name=WP_000100205.1;Note=Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose;gbkey=CDS;gene=araH;product=arabinose ABC transporter permease;protein_id=WP_000100205.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2725575 2727089 . - . ID=gene2704;Name=araG;gbkey=Gene;gene=araG;gene_biotype=protein_coding;locus_tag=SH04_RS13535;old_locus_tag=SH04_13540 NZ_CP010443.1 Protein Homology CDS 2725575 2727089 . - 0 ID=cds2638;Parent=gene2704;Dbxref=Genbank:WP_001187819.1;Name=WP_001187819.1;Note=Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose;gbkey=CDS;gene=araG;product=arabinose import ATP-binding protein AraG;protein_id=WP_001187819.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2727159 2728148 . - . ID=gene2705;Name=SH04_RS13540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13540;old_locus_tag=SH04_13545 NZ_CP010443.1 Protein Homology CDS 2727159 2728148 . - 0 ID=cds2639;Parent=gene2705;Dbxref=Genbank:WP_000548675.1;Name=WP_000548675.1;Note=with AraGH is involved in the transport of arabinose into the cell;gbkey=CDS;product=L-arabinose-binding periplasmic protein;protein_id=WP_000548675.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2728945 2729448 . + . ID=gene2706;Name=SH04_RS13545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13545;old_locus_tag=SH04_13550 NZ_CP010443.1 Protein Homology CDS 2728945 2729448 . + 0 ID=cds2640;Parent=gene2706;Dbxref=Genbank:WP_038432597.1;Name=WP_038432597.1;Note=ferritin B%3B required for virulence in Salmonella%3B may be involved in repair of damaged Fe-S clusters;gbkey=CDS;product=ferritin;protein_id=WP_038432597.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2729527 2729778 . - . ID=gene2707;Name=SH04_RS13550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13550;old_locus_tag=SH04_13555 NZ_CP010443.1 Protein Homology CDS 2729527 2729778 . - 0 ID=cds2641;Parent=gene2707;Dbxref=Genbank:WP_000082127.1;Name=WP_000082127.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000082127.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2729890 2730036 . + . ID=gene2708;Name=SH04_RS13555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13555;old_locus_tag=SH04_13560 NZ_CP010443.1 Protein Homology CDS 2729890 2730036 . + 0 ID=cds2642;Parent=gene2708;Dbxref=Genbank:WP_001297814.1;Name=WP_001297814.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001297814.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2730242 2730565 . + . ID=gene2709;Name=SH04_RS13560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13560;old_locus_tag=SH04_13565 NZ_CP010443.1 Protein Homology CDS 2730242 2730565 . + 0 ID=cds2643;Parent=gene2709;Dbxref=Genbank:WP_001237869.1;Name=WP_001237869.1;gbkey=CDS;product=lipoprotein%2C function unknown;protein_id=WP_001237869.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2730736 2731233 . + . ID=gene2710;Name=SH04_RS13565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13565;old_locus_tag=SH04_13570 NZ_CP010443.1 Protein Homology CDS 2730736 2731233 . + 0 ID=cds2644;Parent=gene2710;Dbxref=Genbank:WP_000917208.1;Name=WP_000917208.1;Note=cytoplasmic iron storage protein;gbkey=CDS;product=non-heme ferritin;protein_id=WP_000917208.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2731271 2731510 . - . ID=gene2711;Name=SH04_RS13570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13570;old_locus_tag=SH04_13575 NZ_CP010443.1 Protein Homology CDS 2731271 2731510 . - 0 ID=cds2645;Parent=gene2711;Dbxref=Genbank:WP_000377225.1;Name=WP_000377225.1;gbkey=CDS;product=DUF2492 domain-containing protein;protein_id=WP_000377225.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2731701 2732912 . + . ID=gene2712;Name=SH04_RS13575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13575;old_locus_tag=SH04_13580 NZ_CP010443.1 Protein Homology CDS 2731701 2732912 . + 0 ID=cds2646;Parent=gene2712;Dbxref=Genbank:WP_000797560.1;Name=WP_000797560.1;Note=tyrosine specific permease;gbkey=CDS;product=tyrosine-specific transporter;protein_id=WP_000797560.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2732974 2733639 . - . ID=gene2713;Name=SH04_RS13580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13580;old_locus_tag=SH04_13585 NZ_CP010443.1 Protein Homology CDS 2732974 2733639 . - 0 ID=cds2647;Parent=gene2713;Dbxref=Genbank:WP_000847902.1;Name=WP_000847902.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000847902.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2733835 2733921 . - . ID=gene2714;Name=SH04_RS13585;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS13585;old_locus_tag=SH04_13590 NZ_CP010443.1 tRNAscan-SE tRNA 2733835 2733921 . - . ID=rna66;Parent=gene2714;anticodon=(pos:complement(2733885..2733887));gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 tRNAscan-SE exon 2733835 2733921 . - . ID=id148;Parent=rna66;anticodon=(pos:complement(2733885..2733887));gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 RefSeq gene 2733934 2734007 . - . ID=gene2715;Name=SH04_RS13590;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS13590;old_locus_tag=SH04_13595 NZ_CP010443.1 tRNAscan-SE tRNA 2733934 2734007 . - . ID=rna67;Parent=gene2715;anticodon=(pos:complement(2733973..2733975));gbkey=tRNA;product=tRNA-Cys NZ_CP010443.1 tRNAscan-SE exon 2733934 2734007 . - . ID=id149;Parent=rna67;anticodon=(pos:complement(2733973..2733975));gbkey=tRNA;product=tRNA-Cys NZ_CP010443.1 RefSeq gene 2734062 2734137 . - . ID=gene2716;Name=SH04_RS13595;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS13595;old_locus_tag=SH04_13600 NZ_CP010443.1 tRNAscan-SE tRNA 2734062 2734137 . - . ID=rna68;Parent=gene2716;anticodon=(pos:complement(2734102..2734104));gbkey=tRNA;product=tRNA-Gly NZ_CP010443.1 tRNAscan-SE exon 2734062 2734137 . - . ID=id150;Parent=rna68;anticodon=(pos:complement(2734102..2734104));gbkey=tRNA;product=tRNA-Gly NZ_CP010443.1 RefSeq gene 2734289 2734837 . - . ID=gene2717;Name=SH04_RS13600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13600;old_locus_tag=SH04_13605 NZ_CP010443.1 Protein Homology CDS 2734289 2734837 . - 0 ID=cds2648;Parent=gene2717;Dbxref=Genbank:WP_001160187.1;Name=WP_001160187.1;gbkey=CDS;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=WP_001160187.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2734894 2736726 . - . ID=gene2718;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=SH04_RS13605;old_locus_tag=SH04_13610 NZ_CP010443.1 Protein Homology CDS 2734894 2736726 . - 0 ID=cds2649;Parent=gene2718;Dbxref=Genbank:WP_001283421.1;Name=WP_001283421.1;Note=The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision;gbkey=CDS;gene=uvrC;product=UvrABC system protein C;protein_id=WP_001283421.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2736723 2737379 . - . ID=gene2719;Name=sirA;gbkey=Gene;gene=sirA;gene_biotype=protein_coding;gene_synonym=uvrY;locus_tag=SH04_RS13610;old_locus_tag=SH04_13615 NZ_CP010443.1 Protein Homology CDS 2736723 2737379 . - 0 ID=cds2650;Parent=gene2719;Dbxref=Genbank:WP_000611335.1;Name=WP_000611335.1;Note=in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system%3B in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system;gbkey=CDS;gene=sirA;product=transcriptional regulator;protein_id=WP_000611335.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2737675 2737851 . + . ID=gene2720;Name=SH04_RS13615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13615;old_locus_tag=SH04_13620 NZ_CP010443.1 Protein Homology CDS 2737675 2737851 . + 0 ID=cds2651;Parent=gene2720;Dbxref=Genbank:WP_000590347.1;Name=WP_000590347.1;gbkey=CDS;product=2-oxo acid dehydrogenase;protein_id=WP_000590347.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2737838 2738062 . + . ID=gene2721;Name=SH04_RS13620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13620;old_locus_tag=SH04_13625 NZ_CP010443.1 Protein Homology CDS 2737838 2738062 . + 0 ID=cds2652;Parent=gene2721;Dbxref=Genbank:WP_000106474.1;Name=WP_000106474.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000106474.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2738130 2738852 . - . ID=gene2722;Name=SH04_RS13625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13625;old_locus_tag=SH04_13630 NZ_CP010443.1 Protein Homology CDS 2738130 2738852 . - 0 ID=cds2653;Parent=gene2722;Dbxref=Genbank:WP_001152715.1;Name=WP_001152715.1;Note=regulates genes involved in cell division;gbkey=CDS;product=regulatory protein SdiA;protein_id=WP_001152715.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2739082 2739834 . - . ID=gene2723;Name=SH04_RS13630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13630;old_locus_tag=SH04_13635 NZ_CP010443.1 Protein Homology CDS 2739082 2739834 . - 0 ID=cds2654;Parent=gene2723;Dbxref=Genbank:WP_001272991.1;Name=WP_001272991.1;gbkey=CDS;product=ABC transporter ATPase;protein_id=WP_001272991.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2739831 2740499 . - . ID=gene2724;Name=SH04_RS13635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13635;old_locus_tag=SH04_13640 NZ_CP010443.1 Protein Homology CDS 2739831 2740499 . - 0 ID=cds2655;Parent=gene2724;Dbxref=Genbank:WP_001158220.1;Name=WP_001158220.1;gbkey=CDS;product=amino acid ABC transporter permease;protein_id=WP_001158220.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2740514 2741500 . - . ID=gene2725;Name=SH04_RS13640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13640;old_locus_tag=SH04_13645 NZ_CP010443.1 Protein Homology CDS 2740514 2741500 . - 0 ID=cds2656;Parent=gene2725;Dbxref=Genbank:WP_001128215.1;Name=WP_001128215.1;Note=catalyzes the formation of pyruvate from D-cysteine;gbkey=CDS;product=D-cysteine desulfhydrase;protein_id=WP_001128215.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2741605 2742405 . - . ID=gene2726;Name=SH04_RS13645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13645;old_locus_tag=SH04_13650 NZ_CP010443.1 Protein Homology CDS 2741605 2742405 . - 0 ID=cds2657;Parent=gene2726;Dbxref=Genbank:WP_001296168.1;Name=WP_001296168.1;gbkey=CDS;product=cystine-binding periplasmic protein;protein_id=WP_001296168.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2742493 2743044 . - . ID=gene2727;Name=SH04_RS13650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13650;old_locus_tag=SH04_13655 NZ_CP010443.1 Protein Homology CDS 2742493 2743044 . - 0 ID=cds2658;Parent=gene2727;Dbxref=Genbank:WP_001350518.1;Name=WP_001350518.1;Note=expression activator of the class 2 type of flagellar operons%2C essential to achieve maximal cell motility%3B activator of type 1 fimbrial gene expression%3B cell density-responsive regulator%3B FliZ in Salmonella typhimurium induces HilA%2C an activator of invasion genes necessary to achieve full virulence;gbkey=CDS;product=regulator of sigma S factor FliZ;protein_id=WP_001350518.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2743090 2743809 . - . ID=gene2728;Name=fliA;gbkey=Gene;gene=fliA;gene_biotype=protein_coding;locus_tag=SH04_RS13655;old_locus_tag=SH04_13660 NZ_CP010443.1 Protein Homology CDS 2743090 2743809 . - 0 ID=cds2659;Parent=gene2728;Dbxref=Genbank:WP_001087467.1;Name=WP_001087467.1;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor directs late flagellar biosynthesis genes;gbkey=CDS;gene=fliA;product=RNA polymerase sigma factor FliA;protein_id=WP_001087467.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2744130 2745626 . - . ID=gene2729;Name=SH04_RS13660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13660;old_locus_tag=SH04_13665 NZ_CP010443.1 Protein Homology CDS 2744130 2745626 . - 0 ID=cds2660;Parent=gene2729;Dbxref=Genbank:WP_000079739.1;Name=WP_000079739.1;Note=structural flagella protein%3B individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella%2C termed phase 1 and phase 2%2C each specified by separate structural genes;gbkey=CDS;product=flagellin;protein_id=WP_000079739.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2745892 2747298 . + . ID=gene2730;Name=fliD;gbkey=Gene;gene=fliD;gene_biotype=protein_coding;locus_tag=SH04_RS13665;old_locus_tag=SH04_13670 NZ_CP010443.1 Protein Homology CDS 2745892 2747298 . + 0 ID=cds2661;Parent=gene2730;Dbxref=Genbank:WP_000146784.1;Name=WP_000146784.1;Note=involved in flagellin assembly;gbkey=CDS;gene=fliD;product=flagellar hook-associated protein 2;protein_id=WP_000146784.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2747323 2747733 . + . ID=gene2731;Name=fliS;gbkey=Gene;gene=fliS;gene_biotype=protein_coding;locus_tag=SH04_RS13670;old_locus_tag=SH04_13675 NZ_CP010443.1 Protein Homology CDS 2747323 2747733 . + 0 ID=cds2662;Parent=gene2731;Dbxref=Genbank:WP_000270671.1;Name=WP_000270671.1;Note=flagellin specific chaperone;gbkey=CDS;gene=fliS;product=flagellar protein FliS;protein_id=WP_000270671.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2747733 2748098 . + . ID=gene2732;Name=SH04_RS13675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13675;old_locus_tag=SH04_13680 NZ_CP010443.1 Protein Homology CDS 2747733 2748098 . + 0 ID=cds2663;Parent=gene2732;Dbxref=Genbank:WP_001015033.1;Name=WP_001015033.1;Note=binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway%3B acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription%3B member of the type III cytoplasmic chaperone family;gbkey=CDS;product=flagellar protein FliT;protein_id=WP_001015033.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2748176 2749663 . + . ID=gene2733;Name=SH04_RS13680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13680;old_locus_tag=SH04_13685 NZ_CP010443.1 Protein Homology CDS 2748176 2749663 . + 0 ID=cds2664;Parent=gene2733;Dbxref=Genbank:WP_001245695.1;Name=WP_001245695.1;Note=converts 1%2C4-alpha-D-glucans to maltodextrin;gbkey=CDS;product=alpha-amylase;protein_id=WP_001245695.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2749697 2750110 . - . ID=gene2734;Name=SH04_RS13685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13685;old_locus_tag=SH04_13690 NZ_CP010443.1 Protein Homology CDS 2749697 2750110 . - 0 ID=cds2665;Parent=gene2734;Dbxref=Genbank:WP_001350519.1;Name=WP_001350519.1;gbkey=CDS;product=lipoprotein;protein_id=WP_001350519.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2750297 2751502 . + . ID=gene2735;Name=SH04_RS13690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13690;old_locus_tag=SH04_13695 NZ_CP010443.1 Protein Homology CDS 2750297 2751502 . + 0 ID=cds2666;Parent=gene2735;Dbxref=Genbank:WP_000118897.1;Name=WP_000118897.1;gbkey=CDS;product=UPF0394 family sulfur transport domain-containing inner membrane protein;protein_id=WP_000118897.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2751499 2751732 . + . ID=gene2736;Name=SH04_RS13695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13695;old_locus_tag=SH04_13700 NZ_CP010443.1 Protein Homology CDS 2751499 2751732 . + 0 ID=cds2667;Parent=gene2736;Dbxref=Genbank:WP_000790504.1;Name=WP_000790504.1;gbkey=CDS;product=TusA family sulfurtransferase;protein_id=WP_000790504.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2751841 2752509 . + . ID=gene2737;Name=SH04_RS13700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13700;old_locus_tag=SH04_13705 NZ_CP010443.1 Protein Homology CDS 2751841 2752509 . + 0 ID=cds2668;Parent=gene2737;Dbxref=Genbank:WP_000334583.1;Name=WP_000334583.1;gbkey=CDS;product=DUF159 domain-containing protein;protein_id=WP_000334583.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2752620 2753099 . + . ID=gene2738;Name=SH04_RS13705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13705;old_locus_tag=SH04_13710 NZ_CP010443.1 Protein Homology CDS 2752620 2753099 . + 0 ID=cds2669;Parent=gene2738;Dbxref=Genbank:WP_000494172.1;Name=WP_000494172.1;gbkey=CDS;product=GNAT family acetyltransferase;protein_id=WP_000494172.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2753243 2753472 . - . ID=gene2739;Name=SH04_RS13710;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS13710;pseudo=true NZ_CP010443.1 Protein Homology CDS 2753243 2753472 . - 0 ID=cds2670;Parent=gene2739;exception=annotated by transcript or proteomic data;gbkey=CDS;product=non-LEE-encoded type III secreted effector domain protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 2753569 2754371 . - . ID=gene2740;Name=SH04_RS13715;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS13715;pseudo=true NZ_CP010443.1 Protein Homology CDS 2753569 2754371 . - 0 ID=cds2671;Parent=gene2740;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 2754522 2754800 . + . ID=gene2741;Name=SH04_RS13720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13720;old_locus_tag=SH04_13725 NZ_CP010443.1 Protein Homology CDS 2754522 2754800 . + 0 ID=cds2672;Parent=gene2741;Dbxref=Genbank:WP_015675427.1;Name=WP_015675427.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_015675427.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2754720 2755034 . - . ID=gene2742;Name=fliE;gbkey=Gene;gene=fliE;gene_biotype=protein_coding;locus_tag=SH04_RS13725;old_locus_tag=SH04_13730 NZ_CP010443.1 Protein Homology CDS 2754720 2755034 . - 0 ID=cds2673;Parent=gene2742;Dbxref=Genbank:WP_001274299.1;Name=WP_001274299.1;Note=forms a junction between the M-ring and FlgB during flagella biosynthesis;gbkey=CDS;gene=fliE;product=flagellar hook-basal body complex protein FliE;protein_id=WP_001274299.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2755249 2756907 . + . ID=gene2743;Name=fliF;gbkey=Gene;gene=fliF;gene_biotype=protein_coding;locus_tag=SH04_RS13730;old_locus_tag=SH04_13735 NZ_CP010443.1 Protein Homology CDS 2755249 2756907 . + 0 ID=cds2674;Parent=gene2743;Dbxref=Genbank:WP_000994427.1;Name=WP_000994427.1;Note=the MS-ring anchors the flagellum to the cytoplasmic membrane%3B part of the flagellar basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod;gbkey=CDS;gene=fliF;product=flagellar M-ring protein;protein_id=WP_000994427.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2756900 2757895 . + . ID=gene2744;Name=fliG;gbkey=Gene;gene=fliG;gene_biotype=protein_coding;locus_tag=SH04_RS13735;old_locus_tag=SH04_13740 NZ_CP010443.1 Protein Homology CDS 2756900 2757895 . + 0 ID=cds2675;Parent=gene2744;Dbxref=Genbank:WP_000067950.1;Name=WP_000067950.1;Note=One of three proteins involved in switching the direction of the flagellar rotation;gbkey=CDS;gene=fliG;product=flagellar motor switch protein FliG;protein_id=WP_000067950.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2757888 2758574 . + . ID=gene2745;Name=fliH;gbkey=Gene;gene=fliH;gene_biotype=protein_coding;locus_tag=SH04_RS13740;old_locus_tag=SH04_13745 NZ_CP010443.1 Protein Homology CDS 2757888 2758574 . + 0 ID=cds2676;Parent=gene2745;Dbxref=Genbank:WP_001282683.1;Name=WP_001282683.1;Note=binds to and inhibits the function of flagella specific ATPase FliI;gbkey=CDS;gene=fliH;product=flagellar assembly protein FliH;protein_id=WP_001282683.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2758574 2759947 . + . ID=gene2746;Name=fliI;gbkey=Gene;gene=fliI;gene_biotype=protein_coding;locus_tag=SH04_RS13745;old_locus_tag=SH04_13750 NZ_CP010443.1 Protein Homology CDS 2758574 2759947 . + 0 ID=cds2677;Parent=gene2746;Dbxref=Genbank:WP_000213294.1;Name=WP_000213294.1;Note=involved in type III protein export during flagellum assembly;gbkey=CDS;gene=fliI;product=flagellum-specific ATP synthase;protein_id=WP_000213294.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2759966 2760409 . + . ID=gene2747;Name=fliJ;gbkey=Gene;gene=fliJ;gene_biotype=protein_coding;locus_tag=SH04_RS13750;old_locus_tag=SH04_13755 NZ_CP010443.1 Protein Homology CDS 2759966 2760409 . + 0 ID=cds2678;Parent=gene2747;Dbxref=Genbank:WP_000807579.1;Name=WP_000807579.1;Note=rod/hook and filament chaperone;gbkey=CDS;gene=fliJ;product=flagellar FliJ protein;protein_id=WP_000807579.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2760406 2761533 . + . ID=gene2748;Name=SH04_RS13755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13755;old_locus_tag=SH04_13760 NZ_CP010443.1 Protein Homology CDS 2760406 2761533 . + 0 ID=cds2679;Parent=gene2748;Dbxref=Genbank:WP_000620071.1;Name=WP_000620071.1;gbkey=CDS;product=flagellar hook-length control protein;protein_id=WP_000620071.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2761638 2762102 . + . ID=gene2749;Name=fliL;gbkey=Gene;gene=fliL;gene_biotype=protein_coding;locus_tag=SH04_RS13760;old_locus_tag=SH04_13765 NZ_CP010443.1 Protein Homology CDS 2761638 2762102 . + 0 ID=cds2680;Parent=gene2749;Dbxref=Genbank:WP_000133106.1;Name=WP_000133106.1;Note=interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring;gbkey=CDS;gene=fliL;product=flagellar protein FliL;protein_id=WP_000133106.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2762107 2763111 . + . ID=gene2750;Name=fliM;gbkey=Gene;gene=fliM;gene_biotype=protein_coding;locus_tag=SH04_RS13765;old_locus_tag=SH04_13770 NZ_CP010443.1 Protein Homology CDS 2762107 2763111 . + 0 ID=cds2681;Parent=gene2750;Dbxref=Genbank:WP_001350520.1;Name=WP_001350520.1;Note=with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation;gbkey=CDS;gene=fliM;product=flagellar motor switch protein FliM;protein_id=WP_001350520.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2763108 2763521 . + . ID=gene2751;Name=fliN;gbkey=Gene;gene=fliN;gene_biotype=protein_coding;locus_tag=SH04_RS13770;old_locus_tag=SH04_13775 NZ_CP010443.1 Protein Homology CDS 2763108 2763521 . + 0 ID=cds2682;Parent=gene2751;Dbxref=Genbank:WP_001282101.1;Name=WP_001282101.1;Note=One of three proteins involved in switching the direction of the flagellar rotation;gbkey=CDS;gene=fliN;product=flagellar motor switch protein FliN;protein_id=WP_001282101.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2763524 2763889 . + . ID=gene2752;Name=SH04_RS13775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13775;old_locus_tag=SH04_13780 NZ_CP010443.1 Protein Homology CDS 2763524 2763889 . + 0 ID=cds2683;Parent=gene2752;Dbxref=Genbank:WP_001302429.1;Name=WP_001302429.1;Note=with FlhA%2C FlhB%2C FliP%2C FliQ and FliR is one of the membrane components of the flagellar export apparatus;gbkey=CDS;product=flagellar protein FliO;protein_id=WP_001302429.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2763889 2764626 . + . ID=gene2753;Name=fliP;gbkey=Gene;gene=fliP;gene_biotype=protein_coding;locus_tag=SH04_RS13780;old_locus_tag=SH04_13785 NZ_CP010443.1 Protein Homology CDS 2763889 2764626 . + 0 ID=cds2684;Parent=gene2753;Dbxref=Genbank:WP_001253441.1;Name=WP_001253441.1;Note=FliP%2C with proteins FliQ and FliR%2C forms the core of the central channel in the flagella export apparatus;gbkey=CDS;gene=fliP;product=flagellar biosynthetic protein FliP;protein_id=WP_001253441.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2764636 2764905 . + . ID=gene2754;Name=fliQ;gbkey=Gene;gene=fliQ;gene_biotype=protein_coding;locus_tag=SH04_RS13785;old_locus_tag=SH04_13790 NZ_CP010443.1 Protein Homology CDS 2764636 2764905 . + 0 ID=cds2685;Parent=gene2754;Dbxref=Genbank:WP_000187358.1;Name=WP_000187358.1;Note=with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus;gbkey=CDS;gene=fliQ;product=flagellar biosynthetic protein FliQ;protein_id=WP_000187358.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2764913 2765698 . + . ID=gene2755;Name=fliR;gbkey=Gene;gene=fliR;gene_biotype=protein_coding;locus_tag=SH04_RS13790;old_locus_tag=SH04_13795 NZ_CP010443.1 Protein Homology CDS 2764913 2765698 . + 0 ID=cds2686;Parent=gene2755;Dbxref=Genbank:WP_000942319.1;Name=WP_000942319.1;Note=FliR%2C with proteins FliP and FliQ%2C forms the core of the central channel in the flagella export apparatus;gbkey=CDS;gene=fliR;product=flagellar biosynthesis protein FliR;protein_id=WP_000942319.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2765988 2766611 . + . ID=gene2756;Name=rcsA;gbkey=Gene;gene=rcsA;gene_biotype=protein_coding;locus_tag=SH04_RS13795;old_locus_tag=SH04_13800 NZ_CP010443.1 Protein Homology CDS 2765988 2766611 . + 0 ID=cds2687;Parent=gene2756;Dbxref=Genbank:WP_000104001.1;Name=WP_000104001.1;Note=with RcsB is a positive regulator of capsular polysaccharide synthesis genes;gbkey=CDS;gene=rcsA;product=transcriptional regulator;protein_id=WP_000104001.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2766655 2766843 . - . ID=gene2757;Name=SH04_RS13800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13800;old_locus_tag=SH04_13805 NZ_CP010443.1 Protein Homology CDS 2766655 2766843 . - 0 ID=cds2688;Parent=gene2757;Dbxref=Genbank:WP_000867217.1;Name=WP_000867217.1;gbkey=CDS;product=protein DsrB;protein_id=WP_000867217.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2767006 2767233 . + . ID=gene2758;Name=SH04_RS13805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13805;old_locus_tag=SH04_13810 NZ_CP010443.1 Protein Homology CDS 2767006 2767233 . + 0 ID=cds2689;Parent=gene2758;Dbxref=Genbank:WP_000844800.1;Name=WP_000844800.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000844800.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2767531 2768346 . + . ID=gene2759;Name=SH04_RS13810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13810;old_locus_tag=SH04_13815 NZ_CP010443.1 Protein Homology CDS 2767531 2768346 . + 0 ID=cds2690;Parent=gene2759;Dbxref=Genbank:WP_000491520.1;Name=WP_000491520.1;Note=catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate;gbkey=CDS;product=mannosyl-3-phosphoglycerate phosphatase;protein_id=WP_000491520.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2768343 2770019 . - . ID=gene2760;Name=SH04_RS13815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13815;old_locus_tag=SH04_13820 NZ_CP010443.1 Protein Homology CDS 2768343 2770019 . - 0 ID=cds2691;Parent=gene2760;Dbxref=Genbank:WP_001369861.1;Name=WP_001369861.1;Note=catalyzes the formation of cyclic di-3'%2C5'-guanylate from guanosine triphosphate%3B involved in the regulation of cellulose biosynthesis;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_001369861.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2770208 2770390 . - . ID=gene2761;Name=SH04_RS13820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13820;old_locus_tag=SH04_13825 NZ_CP010443.1 Protein Homology CDS 2770208 2770390 . - 0 ID=cds2692;Parent=gene2761;Dbxref=Genbank:WP_000009307.1;Name=WP_000009307.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000009307.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2770469 2771386 . - . ID=gene2762;Name=SH04_RS13825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13825;old_locus_tag=SH04_13830 NZ_CP010443.1 Protein Homology CDS 2770469 2771386 . - 0 ID=cds2693;Parent=gene2762;Dbxref=Genbank:WP_000922686.1;Name=WP_000922686.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000922686.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2771559 2772479 . + . ID=gene2763;Name=SH04_RS13830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13830;old_locus_tag=SH04_13835 NZ_CP010443.1 Protein Homology CDS 2771559 2772479 . + 0 ID=cds2694;Parent=gene2763;Dbxref=Genbank:WP_001212226.1;Name=WP_001212226.1;gbkey=CDS;product=amino acid exporter for phenylalanine%2C threonine;protein_id=WP_001212226.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2772468 2772938 . - . ID=gene2764;Name=SH04_RS13835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13835;old_locus_tag=SH04_13840 NZ_CP010443.1 Protein Homology CDS 2772468 2772938 . - 0 ID=cds2695;Parent=gene2764;Dbxref=Genbank:WP_000786005.1;Name=WP_000786005.1;Note=DNA mismatch endonuclease%3B recognizes and repairs T:G mismatches;gbkey=CDS;product=very short patch repair protein;protein_id=WP_000786005.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2772919 2774337 . - . ID=gene2765;Name=SH04_RS13840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13840;old_locus_tag=SH04_13845 NZ_CP010443.1 Protein Homology CDS 2772919 2774337 . - 0 ID=cds2696;Parent=gene2765;Dbxref=Genbank:WP_001157239.1;Name=WP_001157239.1;gbkey=CDS;product=DNA-cytosine methyltransferase;protein_id=WP_001157239.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2774404 2775099 . - . ID=gene2766;Name=SH04_RS13845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13845;old_locus_tag=SH04_13850 NZ_CP010443.1 Protein Homology CDS 2774404 2775099 . - 0 ID=cds2697;Parent=gene2766;Dbxref=Genbank:WP_000365562.1;Name=WP_000365562.1;gbkey=CDS;product=hydrolase;protein_id=WP_000365562.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2775139 2775441 . - . ID=gene2767;Name=SH04_RS13850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13850;old_locus_tag=SH04_13855 NZ_CP010443.1 Protein Homology CDS 2775139 2775441 . - 0 ID=cds2698;Parent=gene2767;Dbxref=Genbank:WP_001300283.1;Name=WP_001300283.1;gbkey=CDS;product=permease;protein_id=WP_001300283.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2776071 2777263 . + . ID=gene2768;Name=SH04_RS13860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS13860;pseudo=true NZ_CP010443.1 Protein Homology CDS 2776071 2777263 . + 0 ID=cds2699;Parent=gene2768;Note=allows for ions and hydrophilic solutes to cross the outer membrane;exception=annotated by transcript or proteomic data;gbkey=CDS;product=porin;pseudo=true;transl_except=(pos:2776554..2776556%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 2777264 2777467 . - . ID=gene2769;Name=SH04_RS13865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13865;old_locus_tag=SH04_13870 NZ_CP010443.1 Protein Homology CDS 2777264 2777467 . - 0 ID=cds2700;Parent=gene2769;Dbxref=Genbank:WP_000550064.1;Name=WP_000550064.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000550064.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2777855 2778706 . + . ID=gene2770;Name=SH04_RS13870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13870;old_locus_tag=SH04_13875 NZ_CP010443.1 Protein Homology CDS 2777855 2778706 . + 0 ID=cds2701;Parent=gene2770;Dbxref=Genbank:WP_000218212.1;Name=WP_000218212.1;Note=Hsp31 stabilizes early unfolding protein intermediates under severe heat stress;gbkey=CDS;product=Molecular chaperone Hsp31 and glyoxalase 3;protein_id=WP_000218212.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2778814 2780172 . - . ID=gene2771;Name=SH04_RS13875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13875;old_locus_tag=SH04_13880 NZ_CP010443.1 Protein Homology CDS 2778814 2780172 . - 0 ID=cds2702;Parent=gene2771;Dbxref=Genbank:WP_000826792.1;Name=WP_000826792.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_000826792.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2780172 2780843 . - . ID=gene2772;Name=SH04_RS13880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13880;old_locus_tag=SH04_13885 NZ_CP010443.1 Protein Homology CDS 2780172 2780843 . - 0 ID=cds2703;Parent=gene2772;Dbxref=Genbank:WP_001395354.1;Name=WP_001395354.1;Note=induced by CusR in the presence of copper%3B YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW%3B yedVW is one of four copper regulons found in E. coli%3B part of the copper homeostasis mechanism%3B confers resistance to copper and several drugs when induced;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001395354.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2780976 2781389 . + . ID=gene2773;Name=SH04_RS13885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13885;old_locus_tag=SH04_13890 NZ_CP010443.1 Protein Homology CDS 2780976 2781389 . + 0 ID=cds2704;Parent=gene2773;Dbxref=Genbank:WP_000920120.1;Name=WP_000920120.1;Note=catalyzes the formation of 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline from 5-hydroxyisourate;gbkey=CDS;product=5-hydroxyisourate hydrolase;protein_id=WP_000920120.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2781498 2782502 . + . ID=gene2774;Name=SH04_RS13890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13890;old_locus_tag=SH04_13895 NZ_CP010443.1 Protein Homology CDS 2781498 2782502 . + 0 ID=cds2705;Parent=gene2774;Dbxref=Genbank:WP_000740107.1;Name=WP_000740107.1;Note=in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase%3B requires inner membrane anchor protein YedZ;gbkey=CDS;product=sulfoxide reductase catalytic subunit YedY;protein_id=WP_000740107.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2782503 2783138 . + . ID=gene2775;Name=SH04_RS13895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13895;old_locus_tag=SH04_13900 NZ_CP010443.1 Protein Homology CDS 2782503 2783138 . + 0 ID=cds2706;Parent=gene2775;Dbxref=Genbank:WP_001240091.1;Name=WP_001240091.1;Note=in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY%3B sulfite oxidase activity not demonstrated%3B contains heme;gbkey=CDS;product=sulfoxide reductase heme-binding subunit YedZ;protein_id=WP_001240091.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2783395 2784045 . + . ID=gene2776;Name=SH04_RS13900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13900;old_locus_tag=SH04_13905 NZ_CP010443.1 Protein Homology CDS 2783395 2784045 . + 0 ID=cds2707;Parent=gene2776;Dbxref=Genbank:WP_001007805.1;Name=WP_001007805.1;gbkey=CDS;product=metal-binding protein ZinT;protein_id=WP_001007805.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2784388 2784918 . + . ID=gene2777;Name=SH04_RS13905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13905;old_locus_tag=SH04_13910 NZ_CP010443.1 Protein Homology CDS 2784388 2784918 . + 0 ID=cds2708;Parent=gene2777;Dbxref=Genbank:WP_001079074.1;Name=WP_001079074.1;gbkey=CDS;product=cytochrome b561 homolog 1;protein_id=WP_001079074.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2784941 2785183 . + . ID=gene2778;Name=SH04_RS13910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13910;old_locus_tag=SH04_13915 NZ_CP010443.1 Protein Homology CDS 2784941 2785183 . + 0 ID=cds2709;Parent=gene2778;Dbxref=Genbank:WP_032144647.1;Name=WP_032144647.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032144647.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2785488 2785577 . - . ID=gene2779;Name=SH04_RS13915;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS13915;old_locus_tag=SH04_13920 NZ_CP010443.1 tRNAscan-SE tRNA 2785488 2785577 . - . ID=rna69;Parent=gene2779;anticodon=(pos:complement(2785541..2785543));gbkey=tRNA;product=tRNA-Ser NZ_CP010443.1 tRNAscan-SE exon 2785488 2785577 . - . ID=id151;Parent=rna69;anticodon=(pos:complement(2785541..2785543));gbkey=tRNA;product=tRNA-Ser NZ_CP010443.1 RefSeq gene 2785671 2786468 . + . ID=gene2780;Name=SH04_RS13920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13920;old_locus_tag=SH04_13925 NZ_CP010443.1 Protein Homology CDS 2785671 2786468 . + 0 ID=cds2710;Parent=gene2780;Dbxref=Genbank:WP_001302302.1;Name=WP_001302302.1;Note=Mlc anti-repressor%3B regulates ptsG by binding and inactivating Mlc;gbkey=CDS;product=protein MtfA;protein_id=WP_001302302.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2786545 2786649 . + . ID=id152;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2786569 2786644 . + . ID=gene2781;Name=SH04_RS13925;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS13925;old_locus_tag=SH04_13930 NZ_CP010443.1 tRNAscan-SE tRNA 2786569 2786644 . + . ID=rna70;Parent=gene2781;anticodon=(pos:2786602..2786604);gbkey=tRNA;product=tRNA-Asn NZ_CP010443.1 tRNAscan-SE exon 2786569 2786644 . + . ID=id153;Parent=rna70;anticodon=(pos:2786602..2786604);gbkey=tRNA;product=tRNA-Asn NZ_CP010443.1 RefSeq gene 2786958 2794034 . + . ID=gene2782;Name=SH04_RS13930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13930;old_locus_tag=SH04_13935 NZ_CP010443.1 Protein Homology CDS 2786958 2794034 . + 0 ID=cds2711;Parent=gene2782;Dbxref=Genbank:WP_010723107.1;Name=WP_010723107.1;gbkey=CDS;product=adhesin;protein_id=WP_010723107.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2794296 2795348 . - . ID=gene2783;Name=SH04_RS13935;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS13935;pseudo=true NZ_CP010443.1 Protein Homology CDS 2794296 2795348 . - 0 ID=cds2712;Parent=gene2783;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(2794644..2794646)%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 2795663 2796979 . + . ID=gene2784;Name=SH04_RS13940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13940;old_locus_tag=SH04_13945 NZ_CP010443.1 Protein Homology CDS 2795663 2796979 . + 0 ID=cds2713;Parent=gene2784;Dbxref=Genbank:WP_000378575.1;Name=WP_000378575.1;gbkey=CDS;product=shikimate transporter;protein_id=WP_000378575.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2797081 2798535 . + . ID=gene2785;Name=SH04_RS13945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13945;old_locus_tag=SH04_13950 NZ_CP010443.1 Protein Homology CDS 2797081 2798535 . + 0 ID=cds2714;Parent=gene2785;Dbxref=Genbank:WP_001060244.1;Name=WP_001060244.1;Note=Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile;gbkey=CDS;product=AMP nucleosidase;protein_id=WP_001060244.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2798878 2799594 . + . ID=gene2786;Name=SH04_RS13950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13950;old_locus_tag=SH04_13955 NZ_CP010443.1 Protein Homology CDS 2798878 2799594 . + 0 ID=cds2715;Parent=gene2786;Dbxref=Genbank:WP_000532923.1;Name=WP_000532923.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000532923.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2800043 2800146 . + . ID=id154;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2800047 2800122 . - . ID=gene2787;Name=SH04_RS13955;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS13955;old_locus_tag=SH04_13960 NZ_CP010443.1 tRNAscan-SE tRNA 2800047 2800122 . - . ID=rna71;Parent=gene2787;anticodon=(pos:complement(2800087..2800089));gbkey=tRNA;product=tRNA-Asn NZ_CP010443.1 tRNAscan-SE exon 2800047 2800122 . - . ID=id155;Parent=rna71;anticodon=(pos:complement(2800087..2800089));gbkey=tRNA;product=tRNA-Asn NZ_CP010443.1 RefSeq gene 2800223 2801677 . - . ID=gene2788;Name=SH04_RS13960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13960;old_locus_tag=SH04_13965 NZ_CP010443.1 Protein Homology CDS 2800223 2801677 . - 0 ID=cds2716;Parent=gene2788;Dbxref=Genbank:WP_001314846.1;Name=WP_001314846.1;gbkey=CDS;product=MATE family multidrug exporter;protein_id=WP_001314846.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2801871 2801946 . + . ID=gene2789;Name=SH04_RS13965;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS13965;old_locus_tag=SH04_13970 NZ_CP010443.1 tRNAscan-SE tRNA 2801871 2801946 . + . ID=rna72;Parent=gene2789;anticodon=(pos:2801904..2801906);gbkey=tRNA;product=tRNA-Asn NZ_CP010443.1 tRNAscan-SE exon 2801871 2801946 . + . ID=id156;Parent=rna72;anticodon=(pos:2801904..2801906);gbkey=tRNA;product=tRNA-Asn NZ_CP010443.1 RefSeq gene 2801984 2802934 . - . ID=gene2790;Name=cbl;gbkey=Gene;gene=cbl;gene_biotype=protein_coding;locus_tag=SH04_RS13970;old_locus_tag=SH04_13975 NZ_CP010443.1 Protein Homology CDS 2801984 2802934 . - 0 ID=cds2717;Parent=gene2790;Dbxref=Genbank:WP_001011008.1;Name=WP_001011008.1;Note=LysR-type transcriptional regulator similar to CysB%3B contains helix-turn-helix (HTH) motif%3B in Escherichia coli this protein regulates two operons consisting of ABC transporters that are part of the cys regulon%3B regulated by CysB%3B DNA-binding transcriptional activator for the ssuEADCB and tauABCD operons;gbkey=CDS;gene=cbl;product=transcriptional regulator;protein_id=WP_001011008.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2803036 2803953 . - . ID=gene2791;Name=SH04_RS13975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13975;old_locus_tag=SH04_13980 NZ_CP010443.1 Protein Homology CDS 2803036 2803953 . - 0 ID=cds2718;Parent=gene2791;Dbxref=Genbank:WP_001011462.1;Name=WP_001011462.1;Note=Transcriptional activator for the hut%2C put and ure operons and repressor for the gdh and gltB operons in response to nitrogen limitation;gbkey=CDS;product=nitrogen assimilation regulatory protein nac;protein_id=WP_001011462.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2804256 2804360 . + . ID=id157;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2804280 2804355 . + . ID=gene2792;Name=SH04_RS13980;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS13980;old_locus_tag=SH04_13985 NZ_CP010443.1 tRNAscan-SE tRNA 2804280 2804355 . + . ID=rna73;Parent=gene2792;anticodon=(pos:2804313..2804315);gbkey=tRNA;product=tRNA-Asn NZ_CP010443.1 tRNAscan-SE exon 2804280 2804355 . + . ID=id158;Parent=rna73;anticodon=(pos:2804313..2804315);gbkey=tRNA;product=tRNA-Asn NZ_CP010443.1 RefSeq gene 2804411 2805343 . - . ID=gene2793;Name=SH04_RS13985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS13985;old_locus_tag=SH04_13990 NZ_CP010443.1 Protein Homology CDS 2804411 2805343 . - 0 ID=cds2719;Parent=gene2793;Dbxref=Genbank:WP_001350523.1;Name=WP_001350523.1;Note=catalyzes th removal of D-alanine and attachment of the murein lipoprotein to the peptidoglycan tetrapeptide chain;gbkey=CDS;product=transpeptidase;protein_id=WP_001350523.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2805408 2806487 . - . ID=gene2794;Name=cobT;gbkey=Gene;gene=cobT;gene_biotype=protein_coding;locus_tag=SH04_RS13990;old_locus_tag=SH04_13995 NZ_CP010443.1 Protein Homology CDS 2805408 2806487 . - 0 ID=cds2720;Parent=gene2794;Dbxref=Genbank:WP_001166160.1;Name=WP_001166160.1;Note=catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5%2C6-dimethylbenzimidazole;gbkey=CDS;gene=cobT;product=nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase;protein_id=WP_001166160.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2806499 2807242 . - . ID=gene2795;Name=cobS;gbkey=Gene;gene=cobS;gene_biotype=protein_coding;locus_tag=SH04_RS13995;old_locus_tag=SH04_14000 NZ_CP010443.1 Protein Homology CDS 2806499 2807242 . - 0 ID=cds2721;Parent=gene2795;Dbxref=Genbank:WP_001326708.1;Name=WP_001326708.1;Note=catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole;gbkey=CDS;gene=cobS;product=adenosylcobinamide-GDP ribazoletransferase;protein_id=WP_001326708.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2807239 2807784 . - . ID=gene2796;Name=cobU;gbkey=Gene;gene=cobU;gene_biotype=protein_coding;locus_tag=SH04_RS14000;old_locus_tag=SH04_14005 NZ_CP010443.1 Protein Homology CDS 2807239 2807784 . - 0 ID=cds2722;Parent=gene2796;Dbxref=Genbank:WP_000973176.1;Name=WP_000973176.1;Note=catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP;gbkey=CDS;gene=cobU;product=cobalamin biosynthesis protein CobU;protein_id=WP_000973176.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2808175 2809377 . + . ID=id159;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2808325 2809305 . - . ID=gene2797;Name=SH04_RS14010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14010;old_locus_tag=SH04_14015 NZ_CP010443.1 Protein Homology CDS 2808325 2809305 . - 0 ID=cds2723;Parent=gene2797;Dbxref=Genbank:WP_000019402.1;Name=WP_000019402.1;gbkey=CDS;product=transposase;protein_id=WP_000019402.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2809448 2809612 . - . ID=gene2798;Name=SH04_RS14015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14015;old_locus_tag=SH04_14020 NZ_CP010443.1 Protein Homology CDS 2809448 2809612 . - 0 ID=cds2724;Parent=gene2798;Dbxref=Genbank:WP_001128468.1;Name=WP_001128468.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001128468.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2810960 2812293 . + . ID=id160;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2810972 2811877 . - . ID=gene2799;Name=SH04_RS14020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14020;old_locus_tag=SH04_14025 NZ_CP010443.1 Protein Homology CDS 2810972 2811877 . - 0 ID=cds2725;Parent=gene2799;Dbxref=Genbank:WP_000376502.1;Name=WP_000376502.1;gbkey=CDS;product=integrase;protein_id=WP_000376502.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2811835 2812200 . - . ID=gene2800;Name=SH04_RS14025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14025;old_locus_tag=SH04_14030 NZ_CP010443.1 Protein Homology CDS 2811835 2812200 . - 0 ID=cds2726;Parent=gene2800;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2812264 2812524 . + . ID=gene2801;Name=SH04_RS14030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14030;old_locus_tag=SH04_14035 NZ_CP010443.1 Protein Homology CDS 2812264 2812524 . + 0 ID=cds2727;Parent=gene2801;Dbxref=Genbank:WP_011443594.1;Name=WP_011443594.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_011443594.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2812521 2813231 . + . ID=gene2802;Name=SH04_RS14035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14035;old_locus_tag=SH04_14040 NZ_CP010443.1 Protein Homology CDS 2812521 2813231 . + 0 ID=cds2728;Parent=gene2802;Dbxref=Genbank:WP_014639038.1;Name=WP_014639038.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014639038.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2813559 2816678 . + . ID=gene2803;Name=SH04_RS14040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14040;old_locus_tag=SH04_14045 NZ_CP010443.1 Protein Homology CDS 2813559 2816678 . + 0 ID=cds2729;Parent=gene2803;Dbxref=Genbank:WP_000820410.1;Name=WP_000820410.1;gbkey=CDS;product=antigen 43;protein_id=WP_000820410.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2816799 2818360 . + . ID=gene2804;Name=SH04_RS14045;end_range=2818360,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS14045;partial=true;pseudo=true NZ_CP010443.1 Protein Homology CDS 2816799 2818360 . + 0 ID=cds2730;Parent=gene2804;end_range=2818360,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 2818328 2818774 . + . ID=gene2805;Name=SH04_RS14050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14050;old_locus_tag=SH04_14055 NZ_CP010443.1 Protein Homology CDS 2818328 2818774 . + 0 ID=cds2731;Parent=gene2805;Dbxref=Genbank:WP_000187523.1;Name=WP_000187523.1;gbkey=CDS;product=UPF0758 protein YeeS;protein_id=WP_000187523.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2818837 2819058 . + . ID=gene2806;Name=SH04_RS14055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14055;old_locus_tag=SH04_14060 NZ_CP010443.1 Protein Homology CDS 2818837 2819058 . + 0 ID=cds2732;Parent=gene2806;Dbxref=Genbank:WP_000692323.1;Name=WP_000692323.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000692323.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2819132 2819500 . + . ID=gene2807;Name=SH04_RS14060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14060;old_locus_tag=SH04_14065 NZ_CP010443.1 Protein Homology CDS 2819132 2819500 . + 0 ID=cds2733;Parent=gene2807;Dbxref=Genbank:WP_001285584.1;Name=WP_001285584.1;gbkey=CDS;product=cytoskeleton bundling-enhancing protein CbeA;protein_id=WP_001285584.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2819589 2819963 . + . ID=gene2808;Name=SH04_RS14065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14065;old_locus_tag=SH04_14070 NZ_CP010443.1 Protein Homology CDS 2819589 2819963 . + 0 ID=cds2734;Parent=gene2808;Dbxref=Genbank:WP_000854814.1;Name=WP_000854814.1;gbkey=CDS;product=toxin CbtA;protein_id=WP_000854814.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2819960 2820154 . + . ID=gene2809;Name=SH04_RS14070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14070;old_locus_tag=SH04_14075 NZ_CP010443.1 Protein Homology CDS 2819960 2820154 . + 0 ID=cds2735;Parent=gene2809;Dbxref=Genbank:WP_000988600.1;Name=WP_000988600.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000988600.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2820167 2820280 . + . ID=gene2810;Name=SH04_RS14075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14075;old_locus_tag=SH04_14080 NZ_CP010443.1 Protein Homology CDS 2820167 2820280 . + 0 ID=cds2736;Parent=gene2810;Dbxref=Genbank:WP_001161660.1;Name=WP_001161660.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001161660.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2820769 2820951 . + . ID=gene2811;Name=SH04_RS14080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14080;old_locus_tag=SH04_14085 NZ_CP010443.1 Protein Homology CDS 2820769 2820951 . + 0 ID=cds2737;Parent=gene2811;Dbxref=Genbank:WP_001016348.1;Name=WP_001016348.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001016348.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2821052 2821381 . - . ID=gene2812;Name=SH04_RS14085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14085;old_locus_tag=SH04_14090 NZ_CP010443.1 Protein Homology CDS 2821052 2821381 . - 0 ID=cds2738;Parent=gene2812;Dbxref=Genbank:WP_000450409.1;Name=WP_000450409.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000450409.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2821553 2822611 . - . ID=gene2813;Name=SH04_RS14090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14090;old_locus_tag=SH04_14095 NZ_CP010443.1 Protein Homology CDS 2821553 2822611 . - 0 ID=cds2739;Parent=gene2813;Dbxref=Genbank:WP_001200891.1;Name=WP_001200891.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001200891.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2822809 2823282 . - . ID=gene2814;Name=SH04_RS14095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14095;old_locus_tag=SH04_14100 NZ_CP010443.1 Protein Homology CDS 2822809 2823282 . - 0 ID=cds2740;Parent=gene2814;Dbxref=Genbank:WP_001105415.1;Name=WP_001105415.1;gbkey=CDS;product=DNA gyrase inhibitor;protein_id=WP_001105415.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2823401 2824567 . - . ID=gene2815;Name=SH04_RS14100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14100;old_locus_tag=SH04_14105 NZ_CP010443.1 Protein Homology CDS 2823401 2824567 . - 0 ID=cds2741;Parent=gene2815;Dbxref=Genbank:WP_000830156.1;Name=WP_000830156.1;Note=removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors%3B penicillin-binding protein 6B%3B one of four%2C DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains;gbkey=CDS;product=D-alanyl-D-alanine carboxypeptidase;protein_id=WP_000830156.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2824779 2826203 . + . ID=gene2816;Name=sbcB;gbkey=Gene;gene=sbcB;gene_biotype=protein_coding;locus_tag=SH04_RS14105;old_locus_tag=SH04_14110 NZ_CP010443.1 Protein Homology CDS 2824779 2826203 . + 0 ID=cds2742;Parent=gene2816;Dbxref=Genbank:WP_001393574.1;Name=WP_001393574.1;Note=Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates;gbkey=CDS;gene=sbcB;product=exonuclease I;protein_id=WP_001393574.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2826246 2826473 . - . ID=gene2817;Name=SH04_RS14110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14110;old_locus_tag=SH04_14115 NZ_CP010443.1 Protein Homology CDS 2826246 2826473 . - 0 ID=cds2743;Parent=gene2817;Dbxref=Genbank:WP_000234896.1;Name=WP_000234896.1;gbkey=CDS;product=TusA family sulfurtransferase;protein_id=WP_000234896.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2826487 2827545 . - . ID=gene2818;Name=SH04_RS14115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14115;old_locus_tag=SH04_14120 NZ_CP010443.1 Protein Homology CDS 2826487 2827545 . - 0 ID=cds2744;Parent=gene2818;Dbxref=Genbank:WP_000492339.1;Name=WP_000492339.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000492339.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2827724 2829082 . - . ID=gene2819;Name=SH04_RS14120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14120;old_locus_tag=SH04_14125 NZ_CP010443.1 Protein Homology CDS 2827724 2829082 . - 0 ID=cds2745;Parent=gene2819;Dbxref=Genbank:WP_000019197.1;Name=WP_000019197.1;gbkey=CDS;product=low-affinity putrescine importer PlaP;protein_id=WP_000019197.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2829349 2830278 . - . ID=gene2820;Name=SH04_RS14125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14125;old_locus_tag=SH04_14130 NZ_CP010443.1 Protein Homology CDS 2829349 2830278 . - 0 ID=cds2746;Parent=gene2820;Dbxref=Genbank:WP_000803351.1;Name=WP_000803351.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000803351.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2830324 2831148 . - . ID=gene2821;Name=SH04_RS14130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14130;old_locus_tag=SH04_14135 NZ_CP010443.1 Protein Homology CDS 2830324 2831148 . - 0 ID=cds2747;Parent=gene2821;Dbxref=Genbank:WP_000754737.1;Name=WP_000754737.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000754737.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2831231 2831485 . - . ID=gene2822;Name=SH04_RS14135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14135;old_locus_tag=SH04_14140 NZ_CP010443.1 Protein Homology CDS 2831231 2831485 . - 0 ID=cds2748;Parent=gene2822;Dbxref=Genbank:WP_000767829.1;Name=WP_000767829.1;gbkey=CDS;product=toxin YoeB;protein_id=WP_000767829.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2831482 2831733 . - . ID=gene2823;Name=SH04_RS14140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14140;old_locus_tag=SH04_14145 NZ_CP010443.1 Protein Homology CDS 2831482 2831733 . - 0 ID=cds2749;Parent=gene2823;Dbxref=Genbank:WP_001259255.1;Name=WP_001259255.1;Note=Antitoxin that counteracts the effect of the YoeB toxin;gbkey=CDS;product=antitoxin YefM;protein_id=WP_001259255.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2832212 2833075 . + . ID=gene2824;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;locus_tag=SH04_RS14145;old_locus_tag=SH04_14150 NZ_CP010443.1 Protein Homology CDS 2832212 2833075 . + 0 ID=cds2750;Parent=gene2824;Dbxref=Genbank:WP_038432600.1;Name=WP_038432600.1;Note=long form of enzyme%3B catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate%3B crucial role in histidine biosynthesis%3B forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors;gbkey=CDS;gene=hisG;product=ATP phosphoribosyltransferase;protein_id=WP_038432600.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2833081 2834385 . + . ID=gene2825;Name=hisD;gbkey=Gene;gene=hisD;gene_biotype=protein_coding;locus_tag=SH04_RS14150;old_locus_tag=SH04_14155 NZ_CP010443.1 Protein Homology CDS 2833081 2834385 . + 0 ID=cds2751;Parent=gene2825;Dbxref=Genbank:WP_000009594.1;Name=WP_000009594.1;Note=catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis%3B functions as a dimer;gbkey=CDS;gene=hisD;product=histidinol dehydrogenase;protein_id=WP_000009594.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2834382 2835452 . + . ID=gene2826;Name=SH04_RS14155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14155;old_locus_tag=SH04_14160 NZ_CP010443.1 Protein Homology CDS 2834382 2835452 . + 0 ID=cds2752;Parent=gene2826;Dbxref=Genbank:WP_000108941.1;Name=WP_000108941.1;Note=catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis;gbkey=CDS;product=histidinol-phosphate aminotransferase;protein_id=WP_000108941.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2835452 2836519 . + . ID=gene2827;Name=SH04_RS14160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14160;old_locus_tag=SH04_14165 NZ_CP010443.1 Protein Homology CDS 2835452 2836519 . + 0 ID=cds2753;Parent=gene2827;Dbxref=Genbank:WP_000080105.1;Name=WP_000080105.1;Note=catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate;gbkey=CDS;product=histidine biosynthesis bifunctional protein HisB;protein_id=WP_000080105.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2836519 2837109 . + . ID=gene2828;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;locus_tag=SH04_RS14165;old_locus_tag=SH04_14170 NZ_CP010443.1 Protein Homology CDS 2836519 2837109 . + 0 ID=cds2754;Parent=gene2828;Dbxref=Genbank:WP_001103560.1;Name=WP_001103560.1;Note=with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate%2C 5-aminoimidazol-4-carboxamide ribonucleotide%2C and glutamate in histidine biosynthesis%3B the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide;gbkey=CDS;gene=hisH;product=imidazole glycerol phosphate synthase subunit HisH;protein_id=WP_001103560.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2837109 2837846 . + . ID=gene2829;Name=SH04_RS14170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14170;old_locus_tag=SH04_14175 NZ_CP010443.1 Protein Homology CDS 2837109 2837846 . + 0 ID=cds2755;Parent=gene2829;Dbxref=Genbank:WP_000586462.1;Name=WP_000586462.1;gbkey=CDS;product=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase;protein_id=WP_000586462.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2837828 2838604 . + . ID=gene2830;Name=SH04_RS14175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14175;old_locus_tag=SH04_14180 NZ_CP010443.1 Protein Homology CDS 2837828 2838604 . + 0 ID=cds2756;Parent=gene2830;Dbxref=Genbank:WP_000880182.1;Name=WP_000880182.1;gbkey=CDS;product=imidazole glycerol phosphate synthase subunit HisF;protein_id=WP_000880182.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2838598 2839209 . + . ID=gene2831;Name=SH04_RS14180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14180;old_locus_tag=SH04_14185 NZ_CP010443.1 Protein Homology CDS 2838598 2839209 . + 0 ID=cds2757;Parent=gene2831;Dbxref=Genbank:WP_000954911.1;Name=WP_000954911.1;Note=catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis;gbkey=CDS;product=histidine biosynthesis bifunctional protein HisIE;protein_id=WP_000954911.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2839305 2840285 . - . ID=gene2832;Name=SH04_RS14185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14185;old_locus_tag=SH04_14190 NZ_CP010443.1 Protein Homology CDS 2839305 2840285 . - 0 ID=cds2758;Parent=gene2832;Dbxref=Genbank:WP_001393575.1;Name=WP_001393575.1;Note=regulator of length of O-antigen component of lipopolysaccharide chains;gbkey=CDS;product=chain length determinant protein;protein_id=WP_001393575.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2840431 2841597 . - . ID=gene2833;Name=SH04_RS14190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14190;old_locus_tag=SH04_14195 NZ_CP010443.1 Protein Homology CDS 2840431 2841597 . - 0 ID=cds2759;Parent=gene2833;Dbxref=Genbank:WP_038432605.1;Name=WP_038432605.1;Note=catalyzes the formation of UDP-glucuronate from UDP-glucose;gbkey=CDS;product=UDP-glucose 6-dehydrogenase;protein_id=WP_038432605.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2841846 2843252 . - . ID=gene2834;Name=SH04_RS14195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14195;old_locus_tag=SH04_14200 NZ_CP010443.1 Protein Homology CDS 2841846 2843252 . - 0 ID=cds2760;Parent=gene2834;Dbxref=Genbank:WP_000043484.1;Name=WP_000043484.1;Note=catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate;gbkey=CDS;product=6-phosphogluconate dehydrogenase decarboxylating;protein_id=WP_000043484.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2843730 2844932 . + . ID=id161;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2843879 2844859 . - . ID=gene2835;Name=SH04_RS14200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14200;old_locus_tag=SH04_14205 NZ_CP010443.1 Protein Homology CDS 2843879 2844859 . - 0 ID=cds2761;Parent=gene2835;Dbxref=Genbank:WP_000019403.1;Name=WP_000019403.1;gbkey=CDS;product=transposase;protein_id=WP_000019403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2844924 2845373 . - . ID=gene2836;Name=SH04_RS14205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS14205;partial=true;pseudo=true;start_range=.,2844924 NZ_CP010443.1 Protein Homology CDS 2844924 2845373 . - 0 ID=cds2762;Parent=gene2836;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=rhamnosyltransferase;pseudo=true;start_range=.,2844924;transl_table=11 NZ_CP010443.1 RefSeq gene 2845375 2846493 . - . ID=gene2837;Name=SH04_RS14210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14210;old_locus_tag=SH04_14215 NZ_CP010443.1 Protein Homology CDS 2845375 2846493 . - 0 ID=cds2763;Parent=gene2837;Dbxref=Genbank:WP_000520320.1;Name=WP_000520320.1;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_000520320.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2846478 2847068 . - . ID=gene2838;Name=SH04_RS14215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14215;old_locus_tag=SH04_14220 NZ_CP010443.1 Protein Homology CDS 2846478 2847068 . - 0 ID=cds2764;Parent=gene2838;Dbxref=Genbank:WP_000601187.1;Name=WP_000601187.1;Note=WbbJ%3B catalyzes the transfer of the O-acetyl moiety to the O antigen%3B part of the lipopolysaccharide biosynthetic pathway;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_000601187.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2847049 2848041 . - . ID=gene2839;Name=SH04_RS14220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14220;old_locus_tag=SH04_14225 NZ_CP010443.1 Protein Homology CDS 2847049 2848041 . - 0 ID=cds2765;Parent=gene2839;Dbxref=Genbank:WP_001407542.1;Name=WP_001407542.1;gbkey=CDS;product=beta-1%2C6-galactofuranosyltransferase WbbI;protein_id=WP_001407542.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2848044 2849210 . - . ID=gene2840;Name=SH04_RS14225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14225;old_locus_tag=SH04_14230 NZ_CP010443.1 Protein Homology CDS 2848044 2849210 . - 0 ID=cds2766;Parent=gene2840;Dbxref=Genbank:WP_000639866.1;Name=WP_000639866.1;gbkey=CDS;product=O-antigen polymerase;protein_id=WP_000639866.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2849210 2850313 . - . ID=gene2841;Name=SH04_RS14230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14230;old_locus_tag=SH04_14235 NZ_CP010443.1 Protein Homology CDS 2849210 2850313 . - 0 ID=cds2767;Parent=gene2841;Dbxref=Genbank:WP_000272486.1;Name=WP_000272486.1;gbkey=CDS;product=UDP-galactopyranose mutase;protein_id=WP_000272486.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2850321 2851568 . - . ID=gene2842;Name=SH04_RS14235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14235;old_locus_tag=SH04_14240 NZ_CP010443.1 Protein Homology CDS 2850321 2851568 . - 0 ID=cds2768;Parent=gene2842;Dbxref=Genbank:WP_001393538.1;Name=WP_001393538.1;gbkey=CDS;product=polisoprenol-linked O-antigen transporter;protein_id=WP_001393538.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2851565 2852122 . - . ID=gene2843;Name=SH04_RS14240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14240;old_locus_tag=SH04_14245 NZ_CP010443.1 Protein Homology CDS 2851565 2852122 . - 0 ID=cds2769;Parent=gene2843;Dbxref=Genbank:WP_001100981.1;Name=WP_001100981.1;gbkey=CDS;product=dTDP-4-dehydrorhamnose 3%2C5-epimerase;protein_id=WP_001100981.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2852122 2853003 . - . ID=gene2844;Name=SH04_RS14245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14245;old_locus_tag=SH04_14250 NZ_CP010443.1 Protein Homology CDS 2852122 2853003 . - 0 ID=cds2770;Parent=gene2844;Dbxref=Genbank:WP_000783975.1;Name=WP_000783975.1;gbkey=CDS;product=glucose-1-phosphate thymidylyltransferase;protein_id=WP_000783975.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2853061 2853959 . - . ID=gene2845;Name=SH04_RS14250;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS14250;pseudo=true NZ_CP010443.1 Protein Homology CDS 2853061 2853959 . - 0 ID=cds2771;Parent=gene2845;Note=with dTDP-4-dehydrorhamnose 3%2C5-epimerase forms a complex known as dTDP-L-rhamnose synthetase%3B catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose;exception=annotated by transcript or proteomic data;gbkey=CDS;product=dTDP-4-dehydrorhamnose reductase;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 2853959 2855044 . - . ID=gene2846;Name=SH04_RS14255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14255;old_locus_tag=SH04_14260 NZ_CP010443.1 Protein Homology CDS 2853959 2855044 . - 0 ID=cds2772;Parent=gene2846;Dbxref=Genbank:WP_000699460.1;Name=WP_000699460.1;gbkey=CDS;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_000699460.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2855417 2856310 . - . ID=gene2847;Name=SH04_RS14260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14260;old_locus_tag=SH04_14265 NZ_CP010443.1 Protein Homology CDS 2855417 2856310 . - 0 ID=cds2773;Parent=gene2847;Dbxref=Genbank:WP_000183060.1;Name=WP_000183060.1;gbkey=CDS;product=UTP--glucose-1-phosphate uridylyltransferase;protein_id=WP_000183060.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2856485 2857879 . - . ID=gene2848;Name=wcaM;gbkey=Gene;gene=wcaM;gene_biotype=protein_coding;locus_tag=SH04_RS14265;old_locus_tag=SH04_14270 NZ_CP010443.1 Protein Homology CDS 2856485 2857879 . - 0 ID=cds2774;Parent=gene2848;Dbxref=Genbank:WP_001116026.1;Name=WP_001116026.1;Note=WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface%3B may be involved in the biosynthesis of colanic acid;gbkey=CDS;gene=wcaM;product=colanic acid biosynthesis protein WcaM;protein_id=WP_001116026.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2857890 2859110 . - . ID=gene2849;Name=SH04_RS14270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14270;old_locus_tag=SH04_14275 NZ_CP010443.1 Protein Homology CDS 2857890 2859110 . - 0 ID=cds2775;Parent=gene2849;Dbxref=Genbank:WP_000862592.1;Name=WP_000862592.1;gbkey=CDS;product=colanic acid biosynthesis glycosyltransferase WcaL;protein_id=WP_000862592.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2859107 2860387 . - . ID=gene2850;Name=SH04_RS14275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14275;old_locus_tag=SH04_14280 NZ_CP010443.1 Protein Homology CDS 2859107 2860387 . - 0 ID=cds2776;Parent=gene2850;Dbxref=Genbank:WP_000770780.1;Name=WP_000770780.1;gbkey=CDS;product=colanic acid biosynthesis pyruvyl transferase WcaK;protein_id=WP_000770780.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2860663 2862141 . - . ID=gene2851;Name=SH04_RS14280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14280;old_locus_tag=SH04_14285 NZ_CP010443.1 Protein Homology CDS 2860663 2862141 . - 0 ID=cds2777;Parent=gene2851;Dbxref=Genbank:WP_000058424.1;Name=WP_000058424.1;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_000058424.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2862143 2863537 . - . ID=gene2852;Name=SH04_RS14285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14285;old_locus_tag=SH04_14290 NZ_CP010443.1 Protein Homology CDS 2862143 2863537 . - 0 ID=cds2778;Parent=gene2852;Dbxref=Genbank:WP_000183107.1;Name=WP_000183107.1;Note=WcaJ%3B glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid;gbkey=CDS;product=UDP-glucose--undecaprenyl-phosphate glucose-1-phosphate transferase;protein_id=WP_000183107.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2863592 2864962 . - . ID=gene2853;Name=SH04_RS14290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14290;old_locus_tag=SH04_14295 NZ_CP010443.1 Protein Homology CDS 2863592 2864962 . - 0 ID=cds2779;Parent=gene2853;Dbxref=Genbank:WP_001350528.1;Name=WP_001350528.1;Note=capsular polysaccharide biosynthesis protein%3B catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate;gbkey=CDS;product=phosphomannomutase;protein_id=WP_001350528.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2865067 2866503 . - . ID=gene2854;Name=cpsB;gbkey=Gene;gene=cpsB;gene_biotype=protein_coding;locus_tag=SH04_RS14295;old_locus_tag=SH04_14300 NZ_CP010443.1 Protein Homology CDS 2865067 2866503 . - 0 ID=cds2780;Parent=gene2854;Dbxref=Genbank:WP_000079274.1;Name=WP_000079274.1;Note=capsular polysaccharide colanic acid biosynthesis protein%3B catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate;gbkey=CDS;gene=cpsB;product=mannose-1-phosphate guanylyltransferase;protein_id=WP_000079274.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2866506 2867729 . - . ID=gene2855;Name=SH04_RS14300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14300;old_locus_tag=SH04_14305 NZ_CP010443.1 Protein Homology CDS 2866506 2867729 . - 0 ID=cds2781;Parent=gene2855;Dbxref=Genbank:WP_000699693.1;Name=WP_000699693.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_000699693.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2867726 2868205 . - . ID=gene2856;Name=SH04_RS14305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14305;old_locus_tag=SH04_14310 NZ_CP010443.1 Protein Homology CDS 2867726 2868205 . - 0 ID=cds2782;Parent=gene2856;Dbxref=Genbank:WP_001393539.1;Name=WP_001393539.1;Note=catalyzes the formation of GDP and D-mannose from GDP-D-mannose%3B also hydrolyzes GDP-glucose;gbkey=CDS;product=GDP-mannose mannosyl hydrolase;protein_id=WP_001393539.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2868208 2869173 . - . ID=gene2857;Name=SH04_RS14310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14310;old_locus_tag=SH04_14315 NZ_CP010443.1 Protein Homology CDS 2868208 2869173 . - 0 ID=cds2783;Parent=gene2857;Dbxref=Genbank:WP_000043654.1;Name=WP_000043654.1;Note=bifunctional GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase%3Bcatalyzes the formation of GDP-fucose from GDP-4-dehydro-6-deoxy-D-mannose;gbkey=CDS;product=GDP-L-fucose synthase;protein_id=WP_000043654.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2869176 2870297 . - . ID=gene2858;Name=SH04_RS14315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14315;old_locus_tag=SH04_14320 NZ_CP010443.1 Protein Homology CDS 2869176 2870297 . - 0 ID=cds2784;Parent=gene2858;Dbxref=Genbank:WP_000048190.1;Name=WP_000048190.1;Note=catalyzes the formation of GDP-4-dehydro-6-deoxy-D-mannose from GDP mannose;gbkey=CDS;product=GDP-mannose 4%2C6-dehydratase;protein_id=WP_000048190.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2870323 2870871 . - . ID=gene2859;Name=SH04_RS14320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14320;old_locus_tag=SH04_14325 NZ_CP010443.1 Protein Homology CDS 2870323 2870871 . - 0 ID=cds2785;Parent=gene2859;Dbxref=Genbank:WP_001153547.1;Name=WP_001153547.1;gbkey=CDS;product=colanic acid biosynthesis acetyltransferase WcaF;protein_id=WP_001153547.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2870887 2871633 . - . ID=gene2860;Name=SH04_RS14325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14325;old_locus_tag=SH04_14330 NZ_CP010443.1 Protein Homology CDS 2870887 2871633 . - 0 ID=cds2786;Parent=gene2860;Dbxref=Genbank:WP_000927089.1;Name=WP_000927089.1;gbkey=CDS;product=colanic acid biosynthesis glycosyltransferase WcaE;protein_id=WP_000927089.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2871644 2872861 . - . ID=gene2861;Name=wcaD;gbkey=Gene;gene=wcaD;gene_biotype=protein_coding;locus_tag=SH04_RS14330;old_locus_tag=SH04_14335 NZ_CP010443.1 Protein Homology CDS 2871644 2872861 . - 0 ID=cds2787;Parent=gene2861;Dbxref=Genbank:WP_000107816.1;Name=WP_000107816.1;Note=essential for colanic acid biosynthesis%3B colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance;gbkey=CDS;gene=wcaD;product=colanic acid polymerase;protein_id=WP_000107816.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2872836 2874053 . - . ID=gene2862;Name=SH04_RS14335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14335;old_locus_tag=SH04_14340 NZ_CP010443.1 Protein Homology CDS 2872836 2874053 . - 0 ID=cds2788;Parent=gene2862;Dbxref=Genbank:WP_001023871.1;Name=WP_001023871.1;gbkey=CDS;product=colanic acid biosynthesis glycosyltransferase WcaC;protein_id=WP_001023871.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2874050 2874538 . - . ID=gene2863;Name=SH04_RS14340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14340;old_locus_tag=SH04_14345 NZ_CP010443.1 Protein Homology CDS 2874050 2874538 . - 0 ID=cds2789;Parent=gene2863;Dbxref=Genbank:WP_000888740.1;Name=WP_000888740.1;Note=acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit)%3B wcaB is induced in sessile bacteria and by osmotic shock%2C and repressed when grown in rich medium;gbkey=CDS;product=colanic acid biosynthesis acetyltransferase WcaB;protein_id=WP_000888740.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2874541 2875380 . - . ID=gene2864;Name=SH04_RS14345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14345;old_locus_tag=SH04_14350 NZ_CP010443.1 Protein Homology CDS 2874541 2875380 . - 0 ID=cds2790;Parent=gene2864;Dbxref=Genbank:WP_000794699.1;Name=WP_000794699.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_000794699.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2875473 2877635 . - . ID=gene2865;Name=SH04_RS14350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14350;old_locus_tag=SH04_14355 NZ_CP010443.1 Protein Homology CDS 2875473 2877635 . - 0 ID=cds2791;Parent=gene2865;Dbxref=Genbank:WP_000137196.1;Name=WP_000137196.1;Note=Wzc%3B catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide);gbkey=CDS;product=tyrosine-protein kinase wzc;protein_id=WP_000137196.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2877638 2878081 . - . ID=gene2866;Name=SH04_RS14355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14355;old_locus_tag=SH04_14360 NZ_CP010443.1 Protein Homology CDS 2877638 2878081 . - 0 ID=cds2792;Parent=gene2866;Dbxref=Genbank:WP_000482901.1;Name=WP_000482901.1;Note=Wzb shows phosphatase activity towards the autophosphorylated Wzc protein%2C which induces colanic acid biosynthesis%3B catalyzes the phosphorylation of UDP-glucose dehydrogenase%2C an enzyme involved in colanic acid biosynthesis;gbkey=CDS;product=protein-tyrosine phosphatase;protein_id=WP_000482901.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2878087 2879226 . - . ID=gene2867;Name=SH04_RS14360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14360;old_locus_tag=SH04_14365 NZ_CP010443.1 Protein Homology CDS 2878087 2879226 . - 0 ID=cds2793;Parent=gene2867;Dbxref=Genbank:WP_000978094.1;Name=WP_000978094.1;Note=required for the translocation of capsular polysaccharide through the outer membrane;gbkey=CDS;product=lipoprotein;protein_id=WP_000978094.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2879885 2881468 . + . ID=gene2868;Name=SH04_RS14365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14365;old_locus_tag=SH04_14370 NZ_CP010443.1 Protein Homology CDS 2879885 2881468 . + 0 ID=cds2794;Parent=gene2868;Dbxref=Genbank:WP_038432608.1;Name=WP_038432608.1;gbkey=CDS;product=membrane protein;protein_id=WP_038432608.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2881742 2883595 . - . ID=gene2869;Name=SH04_RS14370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14370;old_locus_tag=SH04_14375 NZ_CP010443.1 Protein Homology CDS 2881742 2883595 . - 0 ID=cds2795;Parent=gene2869;Dbxref=Genbank:WP_001252331.1;Name=WP_001252331.1;Note=YegA%3B inner membrane protein involved in the assembly of outer membrane proteins (OMPs)%3B asmA-null mutants show low lipopolysaccharide (LPS) levels%2C suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity%2C resulting on altered assembly of OMPs;gbkey=CDS;product=protein AsmA;protein_id=WP_001252331.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2883617 2884198 . - . ID=gene2870;Name=SH04_RS14375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14375;old_locus_tag=SH04_14380 NZ_CP010443.1 Protein Homology CDS 2883617 2884198 . - 0 ID=cds2796;Parent=gene2870;Dbxref=Genbank:WP_001234768.1;Name=WP_001234768.1;gbkey=CDS;product=deoxycytidine triphosphate deaminase;protein_id=WP_001234768.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2884290 2884931 . - . ID=gene2871;Name=SH04_RS14380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14380;old_locus_tag=SH04_14385 NZ_CP010443.1 Protein Homology CDS 2884290 2884931 . - 0 ID=cds2797;Parent=gene2871;Dbxref=Genbank:WP_001295424.1;Name=WP_001295424.1;gbkey=CDS;product=uridine kinase;protein_id=WP_001295424.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2885249 2888566 . + . ID=gene2872;Name=SH04_RS14385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14385;old_locus_tag=SH04_14390 NZ_CP010443.1 Protein Homology CDS 2885249 2888566 . + 0 ID=cds2798;Parent=gene2872;Dbxref=Genbank:WP_000043761.1;Name=WP_000043761.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_000043761.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2888675 2889523 . - . ID=gene2873;Name=SH04_RS14390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14390;old_locus_tag=SH04_14395 NZ_CP010443.1 Protein Homology CDS 2888675 2889523 . - 0 ID=cds2799;Parent=gene2873;Dbxref=Genbank:WP_000288420.1;Name=WP_000288420.1;Note=inducible%2C catalyzes the hydrolysis of alkylated DNA%2C releasing 3-methyladenine%2C 3-methylguanine%2C 7-methylguanine and 7-methyladenine;gbkey=CDS;product=DNA-3-methyladenine glycosylase 2;protein_id=WP_000288420.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2889537 2889644 . - . ID=gene2874;Name=SH04_RS14395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14395;old_locus_tag=SH04_14400 NZ_CP010443.1 Protein Homology CDS 2889537 2889644 . - 0 ID=cds2800;Parent=gene2874;Dbxref=Genbank:WP_001144486.1;Name=WP_001144486.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001144486.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2889657 2891009 . + . ID=gene2875;Name=SH04_RS14400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14400;old_locus_tag=SH04_14405 NZ_CP010443.1 Protein Homology CDS 2889657 2891009 . + 0 ID=cds2801;Parent=gene2875;Dbxref=Genbank:WP_000469708.1;Name=WP_000469708.1;gbkey=CDS;product=Hsp70 chaperone family protein;protein_id=WP_000469708.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2891022 2892968 . - . ID=gene2876;Name=SH04_RS14405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14405;old_locus_tag=SH04_14410 NZ_CP010443.1 Protein Homology CDS 2891022 2892968 . - 0 ID=cds2802;Parent=gene2876;Dbxref=Genbank:WP_000856081.1;Name=WP_000856081.1;gbkey=CDS;product=protein kinase-related non-specific DNA-binding protein;protein_id=WP_000856081.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2893168 2893629 . + . ID=gene2877;Name=SH04_RS14410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14410;old_locus_tag=SH04_14415 NZ_CP010443.1 Protein Homology CDS 2893168 2893629 . + 0 ID=cds2803;Parent=gene2877;Dbxref=Genbank:WP_000722348.1;Name=WP_000722348.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000722348.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2893694 2894374 . - . ID=gene2878;Name=SH04_RS14415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14415;old_locus_tag=SH04_14420 NZ_CP010443.1 Protein Homology CDS 2893694 2894374 . - 0 ID=cds2804;Parent=gene2878;Dbxref=Genbank:WP_001333480.1;Name=WP_001333480.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001333480.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2894452 2895111 . - . ID=gene2879;Name=SH04_RS14420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14420;old_locus_tag=SH04_14425 NZ_CP010443.1 Protein Homology CDS 2894452 2895111 . - 0 ID=cds2805;Parent=gene2879;Dbxref=Genbank:WP_000003154.1;Name=WP_000003154.1;gbkey=CDS;product=VMA domain protein;protein_id=WP_000003154.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2895999 2897246 . + . ID=gene2880;Name=SH04_RS14425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14425;old_locus_tag=SH04_14430 NZ_CP010443.1 Protein Homology CDS 2895999 2897246 . + 0 ID=cds2806;Parent=gene2880;Dbxref=Genbank:WP_000678989.1;Name=WP_000678989.1;Note=Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC which confers resistance against novobiocin and deoxycholate;gbkey=CDS;product=multidrug resistance protein MdtA;protein_id=WP_000678989.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2897246 2900368 . + . ID=gene2881;Name=SH04_RS14430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14430;old_locus_tag=SH04_14435 NZ_CP010443.1 Protein Homology CDS 2897246 2900368 . + 0 ID=cds2807;Parent=gene2881;Dbxref=Genbank:WP_001197875.1;Name=WP_001197875.1;Note=Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC which confers resistance against novobiocin and deoxycholate;gbkey=CDS;product=multidrug resistance protein MdtB;protein_id=WP_001197875.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2900369 2903446 . + . ID=gene2882;Name=SH04_RS14435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14435;old_locus_tag=SH04_14440 NZ_CP010443.1 Protein Homology CDS 2900369 2903446 . + 0 ID=cds2808;Parent=gene2882;Dbxref=Genbank:WP_000667481.1;Name=WP_000667481.1;Note=Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC which confers resistance against novobiocin and deoxycholate;gbkey=CDS;product=multidrug resistance protein MdtC;protein_id=WP_000667481.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2903447 2904862 . + . ID=gene2883;Name=SH04_RS14440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14440;old_locus_tag=SH04_14445 NZ_CP010443.1 Protein Homology CDS 2903447 2904862 . + 0 ID=cds2809;Parent=gene2883;Dbxref=Genbank:WP_000130850.1;Name=WP_000130850.1;gbkey=CDS;product=citrate/iron-citrate/zinc-citrate efflux transporter;protein_id=WP_000130850.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2904859 2906262 . + . ID=gene2884;Name=SH04_RS14445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14445;old_locus_tag=SH04_14450 NZ_CP010443.1 Protein Homology CDS 2904859 2906262 . + 0 ID=cds2810;Parent=gene2884;Dbxref=Genbank:WP_000675150.1;Name=WP_000675150.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_000675150.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2906259 2906981 . + . ID=gene2885;Name=SH04_RS14450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14450;old_locus_tag=SH04_14455 NZ_CP010443.1 Protein Homology CDS 2906259 2906981 . + 0 ID=cds2811;Parent=gene2885;Dbxref=Genbank:WP_000137877.1;Name=WP_000137877.1;Note=response regulator in two-component regulatory system with BaeS%3B regulator of RNA synthesis%2C flagellar biosynthesis%2C chemotaxis and transport;gbkey=CDS;product=two-component system response regulator;protein_id=WP_000137877.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2907172 2907504 . + . ID=gene2886;Name=SH04_RS14455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14455;old_locus_tag=SH04_14460 NZ_CP010443.1 Protein Homology CDS 2907172 2907504 . + 0 ID=cds2812;Parent=gene2886;Dbxref=Genbank:WP_001350529.1;Name=WP_001350529.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001350529.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2907651 2909012 . + . ID=gene2887;Name=SH04_RS14460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14460;old_locus_tag=SH04_14465 NZ_CP010443.1 Protein Homology CDS 2907651 2909012 . + 0 ID=cds2813;Parent=gene2887;Dbxref=Genbank:WP_000476011.1;Name=WP_000476011.1;gbkey=CDS;product=protease;protein_id=WP_000476011.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2909718 2909984 . - . ID=gene2888;Name=SH04_RS14470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14470 NZ_CP010443.1 Protein Homology CDS 2909718 2909984 . - 0 ID=cds2814;Parent=gene2888;Dbxref=Genbank:WP_042405223.1;Name=WP_042405223.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_042405223.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2909972 2910304 . - . ID=gene2889;Name=SH04_RS14475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14475;old_locus_tag=SH04_14480 NZ_CP010443.1 Protein Homology CDS 2909972 2910304 . - 0 ID=cds2815;Parent=gene2889;Dbxref=Genbank:WP_001300979.1;Name=WP_001300979.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001300979.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2910695 2911594 . + . ID=gene2890;Name=SH04_RS14480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14480;old_locus_tag=SH04_14485 NZ_CP010443.1 Protein Homology CDS 2910695 2911594 . + 0 ID=cds2816;Parent=gene2890;Dbxref=Genbank:WP_000807348.1;Name=WP_000807348.1;Note=cytosolic protein with phosphatidylglycerol kinase activity%3B undetermined physiological role;gbkey=CDS;product=phosphatidylglycerol kinase metal-dependent;protein_id=WP_000807348.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2911676 2912122 . - . ID=gene2891;Name=SH04_RS14485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14485;old_locus_tag=SH04_14490 NZ_CP010443.1 Protein Homology CDS 2911676 2912122 . - 0 ID=cds2817;Parent=gene2891;Dbxref=Genbank:WP_000903596.1;Name=WP_000903596.1;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_000903596.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2912152 2913411 . + . ID=id162;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2912219 2912518 . + . ID=gene2892;Name=SH04_RS14490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14490;old_locus_tag=SH04_14495 NZ_CP010443.1 Protein Homology CDS 2912219 2912518 . + 0 ID=cds2818;Parent=gene2892;Dbxref=Genbank:WP_000169527.1;Name=WP_000169527.1;gbkey=CDS;product=transposase;protein_id=WP_000169527.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2912515 2913381 . + . ID=gene2893;Name=SH04_RS14495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14495;old_locus_tag=SH04_14500 NZ_CP010443.1 Protein Homology CDS 2912515 2913381 . + 0 ID=cds2819;Parent=gene2893;Dbxref=Genbank:WP_000878218.1;Name=WP_000878218.1;gbkey=CDS;product=transposase;protein_id=WP_000878218.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2913411 2913716 . - . ID=gene2894;Name=SH04_RS14500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS14500;partial=true;pseudo=true;start_range=.,2913411 NZ_CP010443.1 Protein Homology CDS 2913411 2913716 . - 0 ID=cds2820;Parent=gene2894;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transcriptional regulator;pseudo=true;start_range=.,2913411;transl_table=11 NZ_CP010443.1 RefSeq gene 2913816 2914856 . - . ID=gene2895;Name=SH04_RS14505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14505;old_locus_tag=SH04_14510 NZ_CP010443.1 Protein Homology CDS 2913816 2914856 . - 0 ID=cds2821;Parent=gene2895;Dbxref=Genbank:WP_000844219.1;Name=WP_000844219.1;Note=Zn-dependent%3B NAD(P)-binding%3B catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate;gbkey=CDS;product=galactitol-1-phosphate 5-dehydrogenase;protein_id=WP_000844219.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2914904 2916259 . - . ID=gene2896;Name=SH04_RS14510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14510;old_locus_tag=SH04_14515 NZ_CP010443.1 Protein Homology CDS 2914904 2916259 . - 0 ID=cds2822;Parent=gene2896;Dbxref=Genbank:WP_000490679.1;Name=WP_000490679.1;gbkey=CDS;product=galactitol permease IIC component;protein_id=WP_000490679.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2916263 2916547 . - . ID=gene2897;Name=SH04_RS14515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14515;old_locus_tag=SH04_14520 NZ_CP010443.1 Protein Homology CDS 2916263 2916547 . - 0 ID=cds2823;Parent=gene2897;Dbxref=Genbank:WP_000823270.1;Name=WP_000823270.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=galactitol-specific phosphotransferase enzyme IIB component;protein_id=WP_000823270.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2916578 2917030 . - . ID=gene2898;Name=SH04_RS14520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14520;old_locus_tag=SH04_14525 NZ_CP010443.1 Protein Homology CDS 2916578 2917030 . - 0 ID=cds2824;Parent=gene2898;Dbxref=Genbank:WP_000182899.1;Name=WP_000182899.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=galactitol-specific phosphotransferase enzyme IIA component;protein_id=WP_000182899.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2917040 2918302 . - . ID=gene2899;Name=SH04_RS14525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14525;old_locus_tag=SH04_14530 NZ_CP010443.1 Protein Homology CDS 2917040 2918302 . - 0 ID=cds2825;Parent=gene2899;Dbxref=Genbank:WP_000853883.1;Name=WP_000853883.1;Note=part of the galacitol catabolism pathway%3B with GatY catalyzes the formation of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate from tagatose-1%2C6-bisphosphate;gbkey=CDS;product=tagatose-1%2C6-bisphosphate aldolase;protein_id=WP_000853883.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2918331 2919185 . - . ID=gene2900;Name=gatY;gbkey=Gene;gene=gatY;gene_biotype=protein_coding;locus_tag=SH04_RS14530;old_locus_tag=SH04_14535 NZ_CP010443.1 Protein Homology CDS 2918331 2919185 . - 0 ID=cds2826;Parent=gene2900;Dbxref=Genbank:WP_001307281.1;Name=WP_001307281.1;Note=catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1%2C6-bisphosphate%3B in enteric bacteria there are two D-tagatose 1%2C6-bisphosphate-specific aldolases: KbaY (also called AgaY)%2C involved in catabolism of N-acetyl-galactosamine and D-galactosamine%2C and GatY which is part of the galactitol catabolism pathway;gbkey=CDS;gene=gatY;product=tagatose-1%2C6-bisphosphate aldolase;protein_id=WP_001307281.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2919493 2920545 . - . ID=gene2901;Name=SH04_RS14535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14535;old_locus_tag=SH04_14540 NZ_CP010443.1 Protein Homology CDS 2919493 2920545 . - 0 ID=cds2827;Parent=gene2901;Dbxref=Genbank:WP_000129551.1;Name=WP_000129551.1;Note=catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1%2C6-bisphosphate;gbkey=CDS;product=fructose-bisphosphate aldolase;protein_id=WP_000129551.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2920802 2922079 . + . ID=gene2902;Name=SH04_RS14540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14540;old_locus_tag=SH04_14545 NZ_CP010443.1 Protein Homology CDS 2920802 2922079 . + 0 ID=cds2828;Parent=gene2902;Dbxref=Genbank:WP_000858484.1;Name=WP_000858484.1;gbkey=CDS;product=nucleoside transporter low affinity;protein_id=WP_000858484.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2922076 2923080 . + . ID=gene2903;Name=SH04_RS14545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14545;old_locus_tag=SH04_14550 NZ_CP010443.1 Protein Homology CDS 2922076 2923080 . + 0 ID=cds2829;Parent=gene2903;Dbxref=Genbank:WP_000846217.1;Name=WP_000846217.1;gbkey=CDS;product=ADP-ribosylglycohydrolase;protein_id=WP_000846217.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2923077 2924042 . + . ID=gene2904;Name=SH04_RS14550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14550;old_locus_tag=SH04_14555 NZ_CP010443.1 Protein Homology CDS 2923077 2924042 . + 0 ID=cds2830;Parent=gene2904;Dbxref=Genbank:WP_000012001.1;Name=WP_000012001.1;gbkey=CDS;product=kinase;protein_id=WP_000012001.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2924016 2924762 . - . ID=gene2905;Name=SH04_RS14555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14555;old_locus_tag=SH04_14560 NZ_CP010443.1 Protein Homology CDS 2924016 2924762 . - 0 ID=cds2831;Parent=gene2905;Dbxref=Genbank:WP_000434038.1;Name=WP_000434038.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000434038.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2924814 2925632 . - . ID=gene2906;Name=SH04_RS14560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14560;old_locus_tag=SH04_14565 NZ_CP010443.1 Protein Homology CDS 2924814 2925632 . - 0 ID=cds2832;Parent=gene2906;Dbxref=Genbank:WP_001351783.1;Name=WP_001351783.1;gbkey=CDS;product=family 25 glycosyl hydrolase;protein_id=WP_001351783.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2925697 2926497 . - . ID=gene2907;Name=SH04_RS14565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14565;old_locus_tag=SH04_14570 NZ_CP010443.1 Protein Homology CDS 2925697 2926497 . - 0 ID=cds2833;Parent=gene2907;Dbxref=Genbank:WP_000822274.1;Name=WP_000822274.1;Note=catalyzes the formation hydroxymethylpyrimidine phosphate from hydroxymethylpyrimidine and the formation of of 4-amino-2-methyl-5-diphosphomethylpyrimidine from hydroxymethylpyrimidine phosphate;gbkey=CDS;product=hydroxymethylpyrimidine/phosphomethylpyrimidine kinase;protein_id=WP_000822274.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2926494 2927282 . - . ID=gene2908;Name=SH04_RS14570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14570;old_locus_tag=SH04_14575 NZ_CP010443.1 Protein Homology CDS 2926494 2927282 . - 0 ID=cds2834;Parent=gene2908;Dbxref=Genbank:WP_001195564.1;Name=WP_001195564.1;gbkey=CDS;product=hydroxyethylthiazole kinase;protein_id=WP_001195564.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2927505 2927777 . - . ID=gene2909;Name=SH04_RS14575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14575;old_locus_tag=SH04_14580 NZ_CP010443.1 Protein Homology CDS 2927505 2927777 . - 0 ID=cds2835;Parent=gene2909;Dbxref=Genbank:WP_000019944.1;Name=WP_000019944.1;Note=DNA-binding%3B binds the RcnA promotor;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000019944.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2927898 2928722 . + . ID=gene2910;Name=SH04_RS14580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14580;old_locus_tag=SH04_14585 NZ_CP010443.1 Protein Homology CDS 2927898 2928722 . + 0 ID=cds2836;Parent=gene2910;Dbxref=Genbank:WP_000134636.1;Name=WP_000134636.1;Note=membrane protein conferring nickel and cobalt resistance;gbkey=CDS;product=nickel/cobalt efflux system RcnA;protein_id=WP_000134636.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2928941 2929279 . + . ID=gene2911;Name=SH04_RS14585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14585;old_locus_tag=SH04_14590 NZ_CP010443.1 Protein Homology CDS 2928941 2929279 . + 0 ID=cds2837;Parent=gene2911;Dbxref=Genbank:WP_000153067.1;Name=WP_000153067.1;gbkey=CDS;product=nickel/cobalt homeostasis protein RcnB;protein_id=WP_000153067.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2929361 2930395 . - . ID=gene2912;Name=SH04_RS14590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14590;old_locus_tag=SH04_14595 NZ_CP010443.1 Protein Homology CDS 2929361 2930395 . - 0 ID=cds2838;Parent=gene2912;Dbxref=Genbank:WP_000405713.1;Name=WP_000405713.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_000405713.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2930411 2932891 . - . ID=gene2913;Name=SH04_RS14595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14595;old_locus_tag=SH04_14600 NZ_CP010443.1 Protein Homology CDS 2930411 2932891 . - 0 ID=cds2839;Parent=gene2913;Dbxref=Genbank:WP_000945454.1;Name=WP_000945454.1;gbkey=CDS;product=outer membrane usher protein YehB;protein_id=WP_000945454.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2932907 2933581 . - . ID=gene2914;Name=SH04_RS14600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14600;old_locus_tag=SH04_14605 NZ_CP010443.1 Protein Homology CDS 2932907 2933581 . - 0 ID=cds2840;Parent=gene2914;Dbxref=Genbank:WP_000677393.1;Name=WP_000677393.1;gbkey=CDS;product=fimbrial assembly chaperone protein StcB;protein_id=WP_000677393.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2933661 2934203 . - . ID=gene2915;Name=SH04_RS14605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14605;old_locus_tag=SH04_14610 NZ_CP010443.1 Protein Homology CDS 2933661 2934203 . - 0 ID=cds2841;Parent=gene2915;Dbxref=Genbank:WP_000830456.1;Name=WP_000830456.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_000830456.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2934392 2934572 . + . ID=gene2916;Name=SH04_RS14610;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS14610;pseudo=true NZ_CP010443.1 Protein Homology CDS 2934392 2934572 . + 0 ID=cds2842;Parent=gene2916;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:2934395..2934397%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 2934496 2934777 . - . ID=gene2917;Name=SH04_RS14615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14615;old_locus_tag=SH04_14620 NZ_CP010443.1 Protein Homology CDS 2934496 2934777 . - 0 ID=cds2843;Parent=gene2917;Dbxref=Genbank:WP_001324851.1;Name=WP_001324851.1;gbkey=CDS;product=DUF2574 domain-containing protein;protein_id=WP_001324851.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2935040 2936149 . - . ID=gene2918;Name=SH04_RS14620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14620;old_locus_tag=SH04_14625 NZ_CP010443.1 Protein Homology CDS 2935040 2936149 . - 0 ID=cds2844;Parent=gene2918;Dbxref=Genbank:WP_001005448.1;Name=WP_001005448.1;gbkey=CDS;product=protein mrp;protein_id=WP_001005448.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2936281 2938314 . + . ID=gene2919;Name=metG;gbkey=Gene;gene=metG;gene_biotype=protein_coding;locus_tag=SH04_RS14625;old_locus_tag=SH04_14630 NZ_CP010443.1 Protein Homology CDS 2936281 2938314 . + 0 ID=cds2845;Parent=gene2919;Dbxref=Genbank:WP_001350533.1;Name=WP_001350533.1;Note=methionine--tRNA ligase%3B MetRS%3B adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate%3B some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not%3B four subfamilies exist based on sequence motifs and zinc content;gbkey=CDS;gene=metG;product=methionine--tRNA ligase;protein_id=WP_001350533.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2938455 2939279 . + . ID=gene2920;Name=SH04_RS14630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14630;old_locus_tag=SH04_14635 NZ_CP010443.1 Protein Homology CDS 2938455 2939279 . + 0 ID=cds2846;Parent=gene2920;Dbxref=Genbank:WP_001215566.1;Name=WP_001215566.1;gbkey=CDS;product=molybdenum metabolism regulator;protein_id=WP_001215566.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2940891 2942250 . + . ID=gene2921;Name=SH04_RS14635;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS14635;pseudo=true NZ_CP010443.1 Protein Homology CDS 2940891 2942250 . + 0 ID=cds2847;Parent=gene2921;exception=annotated by transcript or proteomic data;gbkey=CDS;product=regulator;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 2942260 2945892 . + . ID=gene2922;Name=SH04_RS14640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14640;old_locus_tag=SH04_14645 NZ_CP010443.1 Protein Homology CDS 2942260 2945892 . + 0 ID=cds2848;Parent=gene2922;Dbxref=Genbank:WP_000356817.1;Name=WP_000356817.1;gbkey=CDS;product=DUF4132 domain-containing protein;protein_id=WP_000356817.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2945953 2946270 . + . ID=gene2923;Name=SH04_RS14645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14645;old_locus_tag=SH04_14650 NZ_CP010443.1 Protein Homology CDS 2945953 2946270 . + 0 ID=cds2849;Parent=gene2923;Dbxref=Genbank:WP_000636925.1;Name=WP_000636925.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000636925.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2946577 2947665 . + . ID=gene2924;Name=SH04_RS14650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14650;old_locus_tag=SH04_14655 NZ_CP010443.1 Protein Homology CDS 2946577 2947665 . + 0 ID=cds2850;Parent=gene2924;Dbxref=Genbank:WP_001350535.1;Name=WP_001350535.1;gbkey=CDS;product=hexameric AAA+ MoxR family ATPase;protein_id=WP_001350535.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2947676 2949955 . + . ID=gene2925;Name=SH04_RS14655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14655;old_locus_tag=SH04_14660 NZ_CP010443.1 Protein Homology CDS 2947676 2949955 . + 0 ID=cds2851;Parent=gene2925;Dbxref=Genbank:WP_001294387.1;Name=WP_001294387.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001294387.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2949948 2951084 . + . ID=gene2926;Name=SH04_RS14660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14660;old_locus_tag=SH04_14665 NZ_CP010443.1 Protein Homology CDS 2949948 2951084 . + 0 ID=cds2852;Parent=gene2926;Dbxref=Genbank:WP_001333512.1;Name=WP_001333512.1;gbkey=CDS;product=VMA domain YehL ATPase stimulator;protein_id=WP_001333512.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2951081 2952925 . + . ID=gene2927;Name=SH04_RS14665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14665;old_locus_tag=SH04_14670 NZ_CP010443.1 Protein Homology CDS 2951081 2952925 . + 0 ID=cds2853;Parent=gene2927;Dbxref=Genbank:WP_001087218.1;Name=WP_001087218.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001087218.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2953206 2953667 . + . ID=gene2928;Name=SH04_RS14670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14670;old_locus_tag=SH04_14675 NZ_CP010443.1 Protein Homology CDS 2953206 2953667 . + 0 ID=cds2854;Parent=gene2928;Dbxref=Genbank:WP_001295429.1;Name=WP_001295429.1;gbkey=CDS;product=DUF1307 domain-containing protein;protein_id=WP_001295429.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2953707 2954177 . - . ID=gene2929;Name=SH04_RS14675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14675;old_locus_tag=SH04_14680 NZ_CP010443.1 Protein Homology CDS 2953707 2954177 . - 0 ID=cds2855;Parent=gene2929;Dbxref=Genbank:WP_000950409.1;Name=WP_000950409.1;gbkey=CDS;product=DUF1456 domain-containing protein;protein_id=WP_000950409.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2954224 2954943 . - . ID=gene2930;Name=SH04_RS14680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14680;old_locus_tag=SH04_14685 NZ_CP010443.1 Protein Homology CDS 2954224 2954943 . - 0 ID=cds2856;Parent=gene2930;Dbxref=Genbank:WP_000598641.1;Name=WP_000598641.1;Note=unknown function%3B when overproduced it confers drug-resistance;gbkey=CDS;product=two-component system response regulator;protein_id=WP_000598641.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2954940 2956625 . - . ID=gene2931;Name=SH04_RS14685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14685;old_locus_tag=SH04_14690 NZ_CP010443.1 Protein Homology CDS 2954940 2956625 . - 0 ID=cds2857;Parent=gene2931;Dbxref=Genbank:WP_001295431.1;Name=WP_001295431.1;gbkey=CDS;product=sensor histidine kinase;protein_id=WP_001295431.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2956847 2957578 . + . ID=gene2932;Name=SH04_RS14690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14690;old_locus_tag=SH04_14695 NZ_CP010443.1 Protein Homology CDS 2956847 2957578 . + 0 ID=cds2858;Parent=gene2932;Dbxref=Genbank:WP_001240401.1;Name=WP_001240401.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001240401.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2957638 2957745 . + . ID=gene2933;Name=SH04_RS14695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14695;old_locus_tag=SH04_14700 NZ_CP010443.1 Protein Homology CDS 2957638 2957745 . + 0 ID=cds2859;Parent=gene2933;Dbxref=Genbank:WP_001216963.1;Name=WP_001216963.1;gbkey=CDS;product=membrane protein;protein_id=WP_001216963.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2957726 2958457 . - . ID=gene2934;Name=SH04_RS14700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14700;old_locus_tag=SH04_14705 NZ_CP010443.1 Protein Homology CDS 2957726 2958457 . - 0 ID=cds2860;Parent=gene2934;Dbxref=Genbank:WP_000783123.1;Name=WP_000783123.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_000783123.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2958462 2959388 . - . ID=gene2935;Name=SH04_RS14705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14705;old_locus_tag=SH04_14710 NZ_CP010443.1 Protein Homology CDS 2958462 2959388 . - 0 ID=cds2861;Parent=gene2935;Dbxref=Genbank:WP_000569315.1;Name=WP_000569315.1;gbkey=CDS;product=ABC transporter ATPase;protein_id=WP_000569315.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2959381 2960538 . - . ID=gene2936;Name=SH04_RS14710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14710;old_locus_tag=SH04_14715 NZ_CP010443.1 Protein Homology CDS 2959381 2960538 . - 0 ID=cds2862;Parent=gene2936;Dbxref=Genbank:WP_000220837.1;Name=WP_000220837.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_000220837.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2960545 2961462 . - . ID=gene2937;Name=SH04_RS14715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14715;old_locus_tag=SH04_14720 NZ_CP010443.1 Protein Homology CDS 2960545 2961462 . - 0 ID=cds2863;Parent=gene2937;Dbxref=Genbank:WP_001130308.1;Name=WP_001130308.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_001130308.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2961673 2963970 . - . ID=gene2938;Name=SH04_RS14720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14720;old_locus_tag=SH04_14725 NZ_CP010443.1 Protein Homology CDS 2961673 2963970 . - 0 ID=cds2864;Parent=gene2938;Dbxref=Genbank:WP_000871504.1;Name=WP_000871504.1;Note=catalyzes the hydrolysis of terminal beta-D-glucosyl residues;gbkey=CDS;product=periplasmic beta-glucosidase;protein_id=WP_000871504.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2964166 2965881 . + . ID=gene2939;Name=SH04_RS14725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14725;old_locus_tag=SH04_14730 NZ_CP010443.1 Protein Homology CDS 2964166 2965881 . + 0 ID=cds2865;Parent=gene2939;Dbxref=Genbank:WP_000097403.1;Name=WP_000097403.1;Note=component of the membrane-bound D-lactate oxidase%2C FAD-binding%2C NADH independent;gbkey=CDS;product=lactate dehydrogenase;protein_id=WP_000097403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2965919 2966851 . - . ID=gene2940;Name=pbpG;gbkey=Gene;gene=pbpG;gene_biotype=protein_coding;locus_tag=SH04_RS14730;old_locus_tag=SH04_14735 NZ_CP010443.1 Protein Homology CDS 2965919 2966851 . - 0 ID=cds2866;Parent=gene2940;Dbxref=Genbank:WP_001319943.1;Name=WP_001319943.1;Note=specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi%3B Penicillin-binding protein 7;gbkey=CDS;gene=pbpG;product=D-alanyl-D-alanine endopeptidase;protein_id=WP_001319943.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2967025 2967612 . - . ID=gene2941;Name=SH04_RS14735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14735;old_locus_tag=SH04_14740 NZ_CP010443.1 Protein Homology CDS 2967025 2967612 . - 0 ID=cds2867;Parent=gene2941;Dbxref=Genbank:WP_001295454.1;Name=WP_001295454.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295454.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2967782 2968360 . + . ID=gene2942;Name=SH04_RS14740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14740;old_locus_tag=SH04_14745 NZ_CP010443.1 Protein Homology CDS 2967782 2968360 . + 0 ID=cds2868;Parent=gene2942;Dbxref=Genbank:WP_001296821.1;Name=WP_001296821.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296821.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2968490 2969251 . - . ID=gene2943;Name=SH04_RS14745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14745;old_locus_tag=SH04_14750 NZ_CP010443.1 Protein Homology CDS 2968490 2969251 . - 0 ID=cds2869;Parent=gene2943;Dbxref=Genbank:WP_000079538.1;Name=WP_000079538.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000079538.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2969304 2970739 . - . ID=gene2944;Name=SH04_RS14750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS14750;pseudo=true NZ_CP010443.1 Protein Homology CDS 2969304 2970739 . - 0 ID=cds2870;Parent=gene2944;Note=may be involved in resistance to puromycin%2C acriflavine and tetraphenylarsonium chloride;exception=annotated by transcript or proteomic data;gbkey=CDS;product=multidrug transporter permease;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 2970963 2971046 . + . ID=gene2945;Name=SH04_RS14755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14755;old_locus_tag=SH04_14760 NZ_CP010443.1 Protein Homology CDS 2970963 2971046 . + 0 ID=cds2871;Parent=gene2945;Dbxref=Genbank:WP_000691708.1;Name=WP_000691708.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000691708.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2971138 2971357 . + . ID=id163;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2971419 2972366 . - . ID=gene2946;Name=SH04_RS14760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14760;old_locus_tag=SH04_14765 NZ_CP010443.1 Protein Homology CDS 2971419 2972366 . - 0 ID=cds2872;Parent=gene2946;Dbxref=Genbank:WP_001264861.1;Name=WP_001264861.1;gbkey=CDS;product=tRNA-dihydrouridine synthase C;protein_id=WP_001264861.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2972605 2973003 . + . ID=gene2947;Name=SH04_RS14765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14765;old_locus_tag=SH04_14770 NZ_CP010443.1 Protein Homology CDS 2972605 2973003 . + 0 ID=cds2873;Parent=gene2947;Dbxref=Genbank:WP_001295452.1;Name=WP_001295452.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295452.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2973000 2973695 . + . ID=gene2948;Name=SH04_RS14770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14770;old_locus_tag=SH04_14775 NZ_CP010443.1 Protein Homology CDS 2973000 2973695 . + 0 ID=cds2874;Parent=gene2948;Dbxref=Genbank:WP_000968208.1;Name=WP_000968208.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000968208.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2973825 2974709 . + . ID=gene2949;Name=SH04_RS14775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14775;old_locus_tag=SH04_14780 NZ_CP010443.1 Protein Homology CDS 2973825 2974709 . + 0 ID=cds2875;Parent=gene2949;Dbxref=Genbank:WP_000553555.1;Name=WP_000553555.1;Note=Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis;gbkey=CDS;product=cytidine deaminase;protein_id=WP_000553555.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2974859 2975578 . + . ID=gene2950;Name=SH04_RS14780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14780;old_locus_tag=SH04_14785 NZ_CP010443.1 Protein Homology CDS 2974859 2975578 . + 0 ID=cds2876;Parent=gene2950;Dbxref=Genbank:WP_000920064.1;Name=WP_000920064.1;Note=involved in vancomycin sensitivity and other barrier functions of the cell envelope;gbkey=CDS;product=protein SanA;protein_id=WP_000920064.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2975581 2975820 . + . ID=gene2951;Name=SH04_RS14785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14785;old_locus_tag=SH04_14790 NZ_CP010443.1 Protein Homology CDS 2975581 2975820 . + 0 ID=cds2877;Parent=gene2951;Dbxref=Genbank:WP_000383096.1;Name=WP_000383096.1;gbkey=CDS;product=DUF2542 domain-containing protein;protein_id=WP_000383096.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2976014 2977252 . + . ID=gene2952;Name=SH04_RS14790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14790;old_locus_tag=SH04_14795 NZ_CP010443.1 Protein Homology CDS 2976014 2977252 . + 0 ID=cds2878;Parent=gene2952;Dbxref=Genbank:WP_001136389.1;Name=WP_001136389.1;gbkey=CDS;product=NAD-dependent dihydropyrimidine dehydrogenase subunit PreT;protein_id=WP_001136389.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2977246 2978481 . + . ID=gene2953;Name=SH04_RS14795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14795;old_locus_tag=SH04_14800 NZ_CP010443.1 Protein Homology CDS 2977246 2978481 . + 0 ID=cds2879;Parent=gene2953;Dbxref=Genbank:WP_000956071.1;Name=WP_000956071.1;gbkey=CDS;product=NAD-dependent dihydropyrimidine dehydrogenase subunit PreA;protein_id=WP_000956071.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2978724 2979734 . - . ID=gene2954;Name=mglC;gbkey=Gene;gene=mglC;gene_biotype=protein_coding;locus_tag=SH04_RS14800;old_locus_tag=SH04_14805 NZ_CP010443.1 Protein Homology CDS 2978724 2979734 . - 0 ID=cds2880;Parent=gene2954;Dbxref=Genbank:WP_038432609.1;Name=WP_038432609.1;Note=ABC transporter%3B functions in galactose transport%3B part of MglA2C2B transporter complex;gbkey=CDS;gene=mglC;product=beta-methylgalactoside transporter permease;protein_id=WP_038432609.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 2979858 2980629 . + . ID=id164;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 2979876 2980379 . - . ID=gene2955;Name=SH04_RS14805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14805;old_locus_tag=SH04_14810 NZ_CP010443.1 Protein Homology CDS 2979876 2980379 . - 0 ID=cds2881;Parent=gene2955;Dbxref=Genbank:WP_001119362.1;Name=WP_001119362.1;gbkey=CDS;product=transposase;protein_id=WP_001119362.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2980530 2982047 . - . ID=gene2956;Name=SH04_RS14810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS14810;pseudo=true NZ_CP010443.1 Protein Homology CDS 2980530 2982047 . - 0 ID=cds2882;Parent=gene2956;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;pseudo=true;transl_except=(pos:complement(2980602..2980604)%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 2982108 2983106 . - . ID=gene2957;Name=SH04_RS14815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14815;old_locus_tag=SH04_14820 NZ_CP010443.1 Protein Homology CDS 2982108 2983106 . - 0 ID=cds2883;Parent=gene2957;Dbxref=Genbank:WP_001036964.1;Name=WP_001036964.1;Note=wtih MglAC is involved in the transport of beta-methylgalactoside;gbkey=CDS;product=D-galactose-binding periplasmic protein;protein_id=WP_001036964.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2983386 2984426 . - . ID=gene2958;Name=SH04_RS14820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14820;old_locus_tag=SH04_14825 NZ_CP010443.1 Protein Homology CDS 2983386 2984426 . - 0 ID=cds2884;Parent=gene2958;Dbxref=Genbank:WP_000628648.1;Name=WP_000628648.1;Note=controls transcription of galETKM;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000628648.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2984416 2984619 . + . ID=gene2959;Name=SH04_RS14825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14825;old_locus_tag=SH04_14830 NZ_CP010443.1 Protein Homology CDS 2984416 2984619 . + 0 ID=cds2885;Parent=gene2959;Dbxref=Genbank:WP_001308771.1;Name=WP_001308771.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001308771.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2984568 2985725 . - . ID=gene2960;Name=SH04_RS14830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14830;old_locus_tag=SH04_14835 NZ_CP010443.1 Protein Homology CDS 2984568 2985725 . - 0 ID=cds2886;Parent=gene2960;Dbxref=Genbank:WP_000440926.1;Name=WP_000440926.1;gbkey=CDS;product=DUF418 domain-containing protein;protein_id=WP_000440926.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2985742 2986410 . - . ID=gene2961;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=SH04_RS14835;old_locus_tag=SH04_14840 NZ_CP010443.1 Protein Homology CDS 2985742 2986410 . - 0 ID=cds2887;Parent=gene2961;Dbxref=Genbank:WP_001139613.1;Name=WP_001139613.1;Note=involved in the first step of tetrahydrofolate biosynthesis%3B catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1%2C2%2C3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water%3B forms a homopolymer;gbkey=CDS;gene=folE;product=GTP cyclohydrolase 1;protein_id=WP_001139613.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2986564 2986740 . + . ID=gene2962;Name=SH04_RS14840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14840;old_locus_tag=SH04_14845 NZ_CP010443.1 Protein Homology CDS 2986564 2986740 . + 0 ID=cds2888;Parent=gene2962;Dbxref=Genbank:WP_001308773.1;Name=WP_001308773.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001308773.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2986668 2987504 . + . ID=gene2963;Name=SH04_RS14845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14845;old_locus_tag=SH04_14850 NZ_CP010443.1 Protein Homology CDS 2986668 2987504 . + 0 ID=cds2889;Parent=gene2963;Dbxref=Genbank:WP_000425438.1;Name=WP_000425438.1;gbkey=CDS;product=S-formylglutathione hydrolase YeiG;protein_id=WP_000425438.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2987536 2989527 . - . ID=gene2964;Name=SH04_RS14850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14850;old_locus_tag=SH04_14855 NZ_CP010443.1 Protein Homology CDS 2987536 2989527 . - 0 ID=cds2890;Parent=gene2964;Dbxref=Genbank:WP_000489247.1;Name=WP_000489247.1;Note=Cir%3B FeuA%3B CirA%3B receptor protein for siderophores (colicin IA%2C IB and V) and microcins (E492%2C H47%2C and M)%3B TonB-dependent%3B able to transport monomers%2C dimer%2C and linear trimers of 2%2C3-dihydorxybenzoylserine%3B outer membrane protein;gbkey=CDS;product=colicin I receptor;protein_id=WP_000489247.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2989821 2991290 . - . ID=gene2965;Name=SH04_RS14855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14855;old_locus_tag=SH04_14860 NZ_CP010443.1 Protein Homology CDS 2989821 2991290 . - 0 ID=cds2891;Parent=gene2965;Dbxref=Genbank:WP_000253273.1;Name=WP_000253273.1;gbkey=CDS;product=lysine-specific permease;protein_id=WP_000253273.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2991495 2992376 . - . ID=gene2966;Name=SH04_RS14860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14860;old_locus_tag=SH04_14865 NZ_CP010443.1 Protein Homology CDS 2991495 2992376 . - 0 ID=cds2892;Parent=gene2966;Dbxref=Genbank:WP_000548294.1;Name=WP_000548294.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000548294.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2992475 2993524 . + . ID=gene2967;Name=SH04_RS14865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14865;old_locus_tag=SH04_14870 NZ_CP010443.1 Protein Homology CDS 2992475 2993524 . + 0 ID=cds2893;Parent=gene2967;Dbxref=Genbank:WP_000182053.1;Name=WP_000182053.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000182053.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2993598 2994455 . + . ID=gene2968;Name=SH04_RS14870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14870;old_locus_tag=SH04_14875 NZ_CP010443.1 Protein Homology CDS 2993598 2994455 . + 0 ID=cds2894;Parent=gene2968;Dbxref=Genbank:WP_000873894.1;Name=WP_000873894.1;Note=Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues;gbkey=CDS;product=endonuclease IV with intrinsic 3''-5'' exonuclease activity;protein_id=WP_000873894.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2994458 2995546 . + . ID=gene2969;Name=SH04_RS14875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14875;old_locus_tag=SH04_14880 NZ_CP010443.1 Protein Homology CDS 2994458 2995546 . + 0 ID=cds2895;Parent=gene2969;Dbxref=Genbank:WP_001065016.1;Name=WP_001065016.1;gbkey=CDS;product=kinase;protein_id=WP_001065016.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2995653 2996903 . - . ID=gene2970;Name=SH04_RS14880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14880;old_locus_tag=SH04_14885 NZ_CP010443.1 Protein Homology CDS 2995653 2996903 . - 0 ID=cds2896;Parent=gene2970;Dbxref=Genbank:WP_000382966.1;Name=WP_000382966.1;gbkey=CDS;product=nucleoside permease NupX;protein_id=WP_000382966.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2997003 2997944 . - . ID=gene2971;Name=rihB;gbkey=Gene;gene=rihB;gene_biotype=protein_coding;locus_tag=SH04_RS14885;old_locus_tag=SH04_14890 NZ_CP010443.1 Protein Homology CDS 2997003 2997944 . - 0 ID=cds2897;Parent=gene2971;Dbxref=Genbank:WP_000415429.1;Name=WP_000415429.1;Note=Hydrolyzes cytidine or uridine to ribose and cytosine or uracil%2C respectively;gbkey=CDS;gene=rihB;product=pyrimidine-specific ribonucleoside hydrolase RihB;protein_id=WP_000415429.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2998074 2998772 . + . ID=gene2972;Name=SH04_RS14890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14890;old_locus_tag=SH04_14895 NZ_CP010443.1 Protein Homology CDS 2998074 2998772 . + 0 ID=cds2898;Parent=gene2972;Dbxref=Genbank:WP_000658575.1;Name=WP_000658575.1;Note=activator of nucleoside metabolism;gbkey=CDS;product=Crp/Fnr family transcriptional regulator;protein_id=WP_000658575.1;transl_table=11 NZ_CP010443.1 RefSeq gene 2998843 3000093 . - . ID=gene2973;Name=SH04_RS14895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14895;old_locus_tag=SH04_14900 NZ_CP010443.1 Protein Homology CDS 2998843 3000093 . - 0 ID=cds2899;Parent=gene2973;Dbxref=Genbank:WP_000353878.1;Name=WP_000353878.1;gbkey=CDS;product=nucleoside transporter;protein_id=WP_000353878.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3000187 3001125 . - . ID=gene2974;Name=SH04_RS14900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14900;old_locus_tag=SH04_14905 NZ_CP010443.1 Protein Homology CDS 3000187 3001125 . - 0 ID=cds2900;Parent=gene2974;Dbxref=Genbank:WP_001292460.1;Name=WP_001292460.1;gbkey=CDS;product=pseudouridine-5'-phosphate glycosidase;protein_id=WP_001292460.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3001113 3002054 . - . ID=gene2975;Name=SH04_RS14905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14905;old_locus_tag=SH04_14910 NZ_CP010443.1 Protein Homology CDS 3001113 3002054 . - 0 ID=cds2901;Parent=gene2975;Dbxref=Genbank:WP_001208118.1;Name=WP_001208118.1;gbkey=CDS;product=pseudouridine kinase;protein_id=WP_001208118.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3002477 3004168 . - . ID=gene2976;Name=SH04_RS14910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14910;old_locus_tag=SH04_14915 NZ_CP010443.1 Protein Homology CDS 3002477 3004168 . - 0 ID=cds2902;Parent=gene2976;Dbxref=Genbank:WP_000854447.1;Name=WP_000854447.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS fructose EIIBC component;protein_id=WP_000854447.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3004185 3005123 . - . ID=gene2977;Name=fruK;gbkey=Gene;gene=fruK;gene_biotype=protein_coding;locus_tag=SH04_RS14915;old_locus_tag=SH04_14920 NZ_CP010443.1 Protein Homology CDS 3004185 3005123 . - 0 ID=cds2903;Parent=gene2977;Dbxref=Genbank:WP_000091263.1;Name=WP_000091263.1;Note=converts fructose-1-phosphate and ATP to fructose-1%2C6-bisphosphate and ADP%3B highly specific for fructose-1-phopshate%3B similar to PfkB%3B forms homodimers;gbkey=CDS;gene=fruK;product=1-phosphofructokinase;protein_id=WP_000091263.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3005123 3006253 . - . ID=gene2978;Name=SH04_RS14920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14920;old_locus_tag=SH04_14925 NZ_CP010443.1 Protein Homology CDS 3005123 3006253 . - 0 ID=cds2904;Parent=gene2978;Dbxref=Genbank:WP_000487246.1;Name=WP_000487246.1;Note=phosphoenolpyruvate (PEP)-dependent%2C sugar transporting phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIA is phosphorylated by phospho-HPr which then transfers the phosphoryl group to the IIB component;gbkey=CDS;product=multiphosphoryl transfer protein;protein_id=WP_000487246.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3006621 3007802 . + . ID=gene2979;Name=SH04_RS14925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14925;old_locus_tag=SH04_14930 NZ_CP010443.1 Protein Homology CDS 3006621 3007802 . + 0 ID=cds2905;Parent=gene2979;Dbxref=Genbank:WP_038432613.1;Name=WP_038432613.1;gbkey=CDS;product=sugar transporter;protein_id=WP_038432613.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3007799 3008053 . - . ID=gene2980;Name=SH04_RS14930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14930;old_locus_tag=SH04_14935 NZ_CP010443.1 Protein Homology CDS 3007799 3008053 . - 0 ID=cds2906;Parent=gene2980;Dbxref=Genbank:WP_000389030.1;Name=WP_000389030.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000389030.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3008208 3008780 . + . ID=gene2981;Name=SH04_RS14935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14935;old_locus_tag=SH04_14940 NZ_CP010443.1 Protein Homology CDS 3008208 3008780 . + 0 ID=cds2907;Parent=gene2981;Dbxref=Genbank:WP_001136827.1;Name=WP_001136827.1;Note=Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro%2C suggesting its involvement in the formation of the first peptide bond of a protein;gbkey=CDS;product=elongation factor P-like protein;protein_id=WP_001136827.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3009003 3010469 . + . ID=gene2982;Name=SH04_RS14940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14940;old_locus_tag=SH04_14945 NZ_CP010443.1 Protein Homology CDS 3009003 3010469 . + 0 ID=cds2908;Parent=gene2982;Dbxref=Genbank:WP_001091940.1;Name=WP_001091940.1;gbkey=CDS;product=NAD-dependent D-mannonate oxidoreductase;protein_id=WP_001091940.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3010587 3011573 . + . ID=gene2983;Name=SH04_RS14945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14945;old_locus_tag=SH04_14950 NZ_CP010443.1 Protein Homology CDS 3010587 3011573 . + 0 ID=cds2909;Parent=gene2983;Dbxref=Genbank:WP_000198828.1;Name=WP_000198828.1;gbkey=CDS;product=GTPase;protein_id=WP_000198828.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3011612 3012325 . + . ID=gene2984;Name=SH04_RS14950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14950;old_locus_tag=SH04_14955 NZ_CP010443.1 Protein Homology CDS 3011612 3012325 . + 0 ID=cds2910;Parent=gene2984;Dbxref=Genbank:WP_000594599.1;Name=WP_000594599.1;gbkey=CDS;product=lipid A 1-diphosphate synthase;protein_id=WP_000594599.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3012737 3013303 . + . ID=gene2985;Name=spr;gbkey=Gene;gene=spr;gene_biotype=protein_coding;gene_synonym=yeiV;locus_tag=SH04_RS14955;old_locus_tag=SH04_14960 NZ_CP010443.1 Protein Homology CDS 3012737 3013303 . + 0 ID=cds2911;Parent=gene2985;Dbxref=Genbank:WP_000241011.1;Name=WP_000241011.1;Note=mutational suppressor of prc thermosensitivity;gbkey=CDS;gene=spr;product=murein DD-endopeptidase MepS/Murein LD-carboxypeptidase;protein_id=WP_000241011.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3013484 3015040 . + . ID=gene2986;Name=SH04_RS14960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14960;old_locus_tag=SH04_14965 NZ_CP010443.1 Protein Homology CDS 3013484 3015040 . + 0 ID=cds2912;Parent=gene2986;Dbxref=Genbank:WP_000470560.1;Name=WP_000470560.1;Note=involved in resistance to the phages N4 and lambda;gbkey=CDS;product=protein Rtn;protein_id=WP_000470560.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3015122 3016936 . + . ID=gene2987;Name=SH04_RS14965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14965;old_locus_tag=SH04_14970 NZ_CP010443.1 Protein Homology CDS 3015122 3016936 . + 0 ID=cds2913;Parent=gene2987;Dbxref=Genbank:WP_000637046.1;Name=WP_000637046.1;Note=with YejBEF is involved in resistance to microcin C;gbkey=CDS;product=microcin ABC transporter substrate-binding protein;protein_id=WP_000637046.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3016937 3018031 . + . ID=gene2988;Name=SH04_RS14970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14970;old_locus_tag=SH04_14975 NZ_CP010443.1 Protein Homology CDS 3016937 3018031 . + 0 ID=cds2914;Parent=gene2988;Dbxref=Genbank:WP_000501604.1;Name=WP_000501604.1;Note=with YejAEF is involved in resistance to microcin C;gbkey=CDS;product=ABC transporter permease;protein_id=WP_000501604.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3018031 3019056 . + . ID=gene2989;Name=SH04_RS14975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14975;old_locus_tag=SH04_14980 NZ_CP010443.1 Protein Homology CDS 3018031 3019056 . + 0 ID=cds2915;Parent=gene2989;Dbxref=Genbank:WP_000088923.1;Name=WP_000088923.1;Note=part of the microcin C transport system;gbkey=CDS;product=ABC transporter permease;protein_id=WP_000088923.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3019058 3020647 . + . ID=gene2990;Name=SH04_RS14980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14980;old_locus_tag=SH04_14985 NZ_CP010443.1 Protein Homology CDS 3019058 3020647 . + 0 ID=cds2916;Parent=gene2990;Dbxref=Genbank:WP_000194927.1;Name=WP_000194927.1;Note=with YejAEF is involved in resistance to microcin C;gbkey=CDS;product=microcin C ABC transporter ATPase;protein_id=WP_000194927.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3020651 3020995 . - . ID=gene2991;Name=SH04_RS14985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14985;old_locus_tag=SH04_14990 NZ_CP010443.1 Protein Homology CDS 3020651 3020995 . - 0 ID=cds2917;Parent=gene2991;Dbxref=Genbank:WP_000202798.1;Name=WP_000202798.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000202798.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3021328 3022518 . - . ID=gene2992;Name=SH04_RS14990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14990;old_locus_tag=SH04_14995 NZ_CP010443.1 Protein Homology CDS 3021328 3022518 . - 0 ID=cds2918;Parent=gene2992;Dbxref=Genbank:WP_000213361.1;Name=WP_000213361.1;Note=Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance;gbkey=CDS;product=Bcr/CflA family drug resistance efflux transporter;protein_id=WP_000213361.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3022546 3023241 . - . ID=gene2993;Name=SH04_RS14995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS14995;old_locus_tag=SH04_15000 NZ_CP010443.1 Protein Homology CDS 3022546 3023241 . - 0 ID=cds2919;Parent=gene2993;Dbxref=Genbank:WP_001234850.1;Name=WP_001234850.1;Note=catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA;gbkey=CDS;product=ribosomal small subunit pseudouridine synthase A;protein_id=WP_001234850.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3023390 3025150 . + . ID=gene2994;Name=SH04_RS15000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15000;old_locus_tag=SH04_15005 NZ_CP010443.1 Protein Homology CDS 3023390 3025150 . + 0 ID=cds2920;Parent=gene2994;Dbxref=Genbank:WP_000578061.1;Name=WP_000578061.1;gbkey=CDS;product=ATP-dependent DNA or RNA helicase;protein_id=WP_000578061.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3025275 3025559 . + . ID=gene2995;Name=SH04_RS15005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15005;old_locus_tag=SH04_15010 NZ_CP010443.1 Protein Homology CDS 3025275 3025559 . + 0 ID=cds2921;Parent=gene2995;Dbxref=Genbank:WP_000494183.1;Name=WP_000494183.1;gbkey=CDS;product=50S ribosomal protein L25;protein_id=WP_000494183.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3025698 3026705 . - . ID=gene2996;Name=SH04_RS15010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15010;old_locus_tag=SH04_15015 NZ_CP010443.1 Protein Homology CDS 3025698 3026705 . - 0 ID=cds2922;Parent=gene2996;Dbxref=Genbank:WP_000050793.1;Name=WP_000050793.1;gbkey=CDS;product=nucleoid-associated protein;protein_id=WP_000050793.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3026887 3027114 . + . ID=gene2997;Name=SH04_RS15015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15015;old_locus_tag=SH04_15020 NZ_CP010443.1 Protein Homology CDS 3026887 3027114 . + 0 ID=cds2923;Parent=gene2997;Dbxref=Genbank:WP_001135667.1;Name=WP_001135667.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001135667.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3027134 3028894 . + . ID=gene2998;Name=SH04_RS15020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15020;old_locus_tag=SH04_15025 NZ_CP010443.1 Protein Homology CDS 3027134 3028894 . + 0 ID=cds2924;Parent=gene2998;Dbxref=Genbank:WP_000256203.1;Name=WP_000256203.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000256203.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3028969 3029045 . + . ID=gene2999;Name=SH04_RS15025;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS15025;old_locus_tag=SH04_15030 NZ_CP010443.1 tRNAscan-SE tRNA 3028969 3029045 . + . ID=rna74;Parent=gene2999;anticodon=(pos:3029003..3029005);gbkey=tRNA;product=tRNA-Pro NZ_CP010443.1 tRNAscan-SE exon 3028969 3029045 . + . ID=id165;Parent=rna74;anticodon=(pos:3029003..3029005);gbkey=tRNA;product=tRNA-Pro NZ_CP010443.1 RefSeq gene 3029148 3031658 . - . ID=gene3000;Name=SH04_RS15030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15030;old_locus_tag=SH04_15035 NZ_CP010443.1 Protein Homology CDS 3029148 3031658 . - 0 ID=cds2925;Parent=gene3000;Dbxref=Genbank:WP_000168978.1;Name=WP_000168978.1;gbkey=CDS;product=membrane protein;protein_id=WP_000168978.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 3031674 3032871 . + . ID=id166;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3031823 3032803 . - . ID=gene3001;Name=SH04_RS15035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15035;old_locus_tag=SH04_15040 NZ_CP010443.1 Protein Homology CDS 3031823 3032803 . - 0 ID=cds2926;Parent=gene3001;Dbxref=Genbank:WP_000019403.1;Name=WP_000019403.1;gbkey=CDS;product=transposase;protein_id=WP_000019403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3032969 3033226 . - . ID=gene3002;Name=SH04_RS15040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15040;old_locus_tag=SH04_15045 NZ_CP010443.1 Protein Homology CDS 3032969 3033226 . - 0 ID=cds2927;Parent=gene3002;Dbxref=Genbank:WP_001303596.1;Name=WP_001303596.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303596.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3033258 3033905 . + . ID=gene3003;Name=SH04_RS15045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15045;old_locus_tag=SH04_15050 NZ_CP010443.1 Protein Homology CDS 3033258 3033905 . + 0 ID=cds2928;Parent=gene3003;Dbxref=Genbank:WP_001113639.1;Name=WP_001113639.1;Note=nitrate/nitrite response regulator NarP%3B NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems%3B represses expression of other anaerobic genes;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001113639.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3034116 3035168 . - . ID=gene3004;Name=SH04_RS15050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15050;old_locus_tag=SH04_15055 NZ_CP010443.1 Protein Homology CDS 3034116 3035168 . - 0 ID=cds2929;Parent=gene3004;Dbxref=Genbank:WP_001211575.1;Name=WP_001211575.1;Note=cytochrome c-type biogenesis protein%3B involved in the attachment of heme to cytochrome c;gbkey=CDS;product=cytochrome c-type biogenesis protein CcmH;protein_id=WP_001211575.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3035165 3035722 . - . ID=gene3005;Name=SH04_RS15055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15055;old_locus_tag=SH04_15060 NZ_CP010443.1 Protein Homology CDS 3035165 3035722 . - 0 ID=cds2930;Parent=gene3005;Dbxref=Genbank:WP_000824439.1;Name=WP_000824439.1;Note=cytochrome c-type biogenesis thioredoxin%3B involved in the reduction of disulfide bonds to allow heme bonding;gbkey=CDS;product=thiol:disulfide interchange protein DsbE;protein_id=WP_000824439.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3035719 3037662 . - . ID=gene3006;Name=SH04_RS15060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15060;old_locus_tag=SH04_15065 NZ_CP010443.1 Protein Homology CDS 3035719 3037662 . - 0 ID=cds2931;Parent=gene3006;Dbxref=Genbank:WP_000982447.1;Name=WP_000982447.1;Note=cytochrome c-type biogenesis protein%3B required for the transfer of heme to apocytochrome c;gbkey=CDS;product=cytochrome c-type biogenesis protein CcmF;protein_id=WP_000982447.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3037659 3038138 . - . ID=gene3007;Name=SH04_RS15065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15065;old_locus_tag=SH04_15070 NZ_CP010443.1 Protein Homology CDS 3037659 3038138 . - 0 ID=cds2932;Parent=gene3007;Dbxref=Genbank:WP_001026418.1;Name=WP_001026418.1;Note=CycJ%3B periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes%3B requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome%3B part of the cytochrome c maturation system%3B periplasmic protein anchored to the inner membrane;gbkey=CDS;product=cytochrome c-type biogenesis protein CcmE;protein_id=WP_001026418.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3038135 3038344 . - . ID=gene3008;Name=SH04_RS15070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15070;old_locus_tag=SH04_15075 NZ_CP010443.1 Protein Homology CDS 3038135 3038344 . - 0 ID=cds2933;Parent=gene3008;Dbxref=Genbank:WP_000186540.1;Name=WP_000186540.1;Note=is invovled in heme transfer during cytochrome c biogenesis%3B acts to stabilize CcmC and CcmE;gbkey=CDS;product=heme exporter protein D;protein_id=WP_000186540.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3038341 3039078 . - . ID=gene3009;Name=SH04_RS15075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15075;old_locus_tag=SH04_15080 NZ_CP010443.1 Protein Homology CDS 3038341 3039078 . - 0 ID=cds2934;Parent=gene3009;Dbxref=Genbank:WP_001295447.1;Name=WP_001295447.1;Note=with CcmABDE is involved in the transport of protoheme IX%3B CcmC is required for heme transfer to CcmE;gbkey=CDS;product=heme exporter protein C;protein_id=WP_001295447.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3039120 3039779 . - . ID=gene3010;Name=SH04_RS15080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15080;old_locus_tag=SH04_15085 NZ_CP010443.1 Protein Homology CDS 3039120 3039779 . - 0 ID=cds2935;Parent=gene3010;Dbxref=Genbank:WP_000498849.1;Name=WP_000498849.1;Note=with CcmABCE is involved in the transport of protoheme IX%3B CcmB is required for the release of holoCcmE from CcmC;gbkey=CDS;product=heme ABC transporter permease;protein_id=WP_000498849.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3039779 3040396 . - . ID=gene3011;Name=SH04_RS15085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15085;old_locus_tag=SH04_15090 NZ_CP010443.1 Protein Homology CDS 3039779 3040396 . - 0 ID=cds2936;Parent=gene3011;Dbxref=Genbank:WP_000888560.1;Name=WP_000888560.1;gbkey=CDS;product=cytochrome C biogenesis protein CcmA;protein_id=WP_000888560.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3040415 3041017 . - . ID=gene3012;Name=SH04_RS15090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15090;old_locus_tag=SH04_15095 NZ_CP010443.1 Protein Homology CDS 3040415 3041017 . - 0 ID=cds2937;Parent=gene3012;Dbxref=Genbank:WP_000528376.1;Name=WP_000528376.1;Note=with NapABDFGH functions as a nitrate reductase%3B NapC functions as an electron shuttle between NapAB and NapGH or quinone;gbkey=CDS;product=cytochrome c-type protein NapC;protein_id=WP_000528376.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3041027 3041476 . - . ID=gene3013;Name=napB;gbkey=Gene;gene=napB;gene_biotype=protein_coding;locus_tag=SH04_RS15095;old_locus_tag=SH04_15100 NZ_CP010443.1 Protein Homology CDS 3041027 3041476 . - 0 ID=cds2938;Parent=gene3013;Dbxref=Genbank:WP_038432616.1;Name=WP_038432616.1;Note=small subunit of periplasmic nitrate reductase%3B receives electrons from the membrane-bound NapC and passes them to NapA;gbkey=CDS;gene=napB;product=periplasmic nitrate reductase electron transfer subunit;protein_id=WP_038432616.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3041473 3042336 . - . ID=gene3014;Name=napH;gbkey=Gene;gene=napH;gene_biotype=protein_coding;locus_tag=SH04_RS15100;old_locus_tag=SH04_15105 NZ_CP010443.1 Protein Homology CDS 3041473 3042336 . - 0 ID=cds2939;Parent=gene3014;Dbxref=Genbank:WP_000013515.1;Name=WP_000013515.1;Note=part of NapHG quinol dehydrogenase%3B couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA;gbkey=CDS;gene=napH;product=ferredoxin-type protein NapH;protein_id=WP_000013515.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3042323 3043018 . - . ID=gene3015;Name=napG;gbkey=Gene;gene=napG;gene_biotype=protein_coding;locus_tag=SH04_RS15105;old_locus_tag=SH04_15110 NZ_CP010443.1 Protein Homology CDS 3042323 3043018 . - 0 ID=cds2940;Parent=gene3015;Dbxref=Genbank:WP_000091291.1;Name=WP_000091291.1;Note=part of NapHG quinol dehydrogenase%3B couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA%3B secreted by twin arginine translocation pathway;gbkey=CDS;gene=napG;product=ferredoxin-type protein NapG;protein_id=WP_000091291.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3043025 3045511 . - . ID=gene3016;Name=SH04_RS15110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15110;old_locus_tag=SH04_15115 NZ_CP010443.1 Protein Homology CDS 3043025 3045511 . - 0 ID=cds2941;Parent=gene3016;Dbxref=Genbank:WP_000778061.1;Name=WP_000778061.1;Note=periplasmic%3B catalytic subunit%3B with NapBC catalyzes the reduction of nitrate to nitrite%3B NapAB receives electrons from NapC;gbkey=CDS;product=periplasmic nitrate reductase;protein_id=WP_000778061.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3045508 3045771 . - . ID=gene3017;Name=SH04_RS15115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15115;old_locus_tag=SH04_15120 NZ_CP010443.1 Protein Homology CDS 3045508 3045771 . - 0 ID=cds2942;Parent=gene3017;Dbxref=Genbank:WP_000557378.1;Name=WP_000557378.1;gbkey=CDS;product=protein NapD;protein_id=WP_000557378.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3045761 3046255 . - . ID=gene3018;Name=SH04_RS15120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15120;old_locus_tag=SH04_15125 NZ_CP010443.1 Protein Homology CDS 3045761 3046255 . - 0 ID=cds2943;Parent=gene3018;Dbxref=Genbank:WP_000686723.1;Name=WP_000686723.1;Note=Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.;gbkey=CDS;product=ferredoxin-type protein NapF;protein_id=WP_000686723.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3046364 3046528 . + . ID=gene3019;Name=SH04_RS15125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15125;old_locus_tag=SH04_15130 NZ_CP010443.1 Protein Homology CDS 3046364 3046528 . + 0 ID=cds2944;Parent=gene3019;Dbxref=Genbank:WP_001310984.1;Name=WP_001310984.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001310984.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3046663 3047151 . + . ID=gene3020;Name=SH04_RS15130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15130;old_locus_tag=SH04_15135 NZ_CP010443.1 Protein Homology CDS 3046663 3047151 . + 0 ID=cds2945;Parent=gene3020;Dbxref=Genbank:WP_000849209.1;Name=WP_000849209.1;Note=serine protease inhibitor%2C inhibits trypsin and other proteases;gbkey=CDS;product=ecotin;protein_id=WP_000849209.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 3047158 3047823 . + . ID=id167;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3047866 3049512 . - . ID=gene3021;Name=SH04_RS15135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15135;old_locus_tag=SH04_15140 NZ_CP010443.1 Protein Homology CDS 3047866 3049512 . - 0 ID=cds2946;Parent=gene3021;Dbxref=Genbank:WP_000758077.1;Name=WP_000758077.1;gbkey=CDS;product=malate:quinone oxidoreductase;protein_id=WP_000758077.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3049730 3051373 . - . ID=gene3022;Name=SH04_RS15140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15140;old_locus_tag=SH04_15145 NZ_CP010443.1 Protein Homology CDS 3049730 3051373 . - 0 ID=cds2947;Parent=gene3022;Dbxref=Genbank:WP_000422182.1;Name=WP_000422182.1;Note=efflux pump for the antibacterial peptide microcin J25;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_000422182.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3051449 3052099 . - . ID=gene3023;Name=SH04_RS15145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15145;old_locus_tag=SH04_15150 NZ_CP010443.1 Protein Homology CDS 3051449 3052099 . - 0 ID=cds2948;Parent=gene3023;Dbxref=Genbank:WP_000884971.1;Name=WP_000884971.1;gbkey=CDS;product=alpha-ketoglutarate-dependent dioxygenase AlkB;protein_id=WP_000884971.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3052099 3053163 . - . ID=gene3024;Name=SH04_RS15150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15150;old_locus_tag=SH04_15155 NZ_CP010443.1 Protein Homology CDS 3052099 3053163 . - 0 ID=cds2949;Parent=gene3024;Dbxref=Genbank:WP_000710375.1;Name=WP_000710375.1;Note=regulates genes involved in the repair of alkylated DNA%3B repairs DNA containing 6-O-methylguanine;gbkey=CDS;product=bifunctional transcriptional activator/DNA repair enzyme Ada;protein_id=WP_000710375.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3053237 3054292 . - . ID=gene3025;Name=SH04_RS15155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15155;old_locus_tag=SH04_15160 NZ_CP010443.1 Protein Homology CDS 3053237 3054292 . - 0 ID=cds2950;Parent=gene3025;Dbxref=Genbank:WP_000406064.1;Name=WP_000406064.1;Note=catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine%3B involved in the maintenance and/or assembly of sulfur clusters%3B periplasmic lipoporotein anchored to the inner membrane%3B part of the thiamine pyrophosphate biosynthesis pathway;gbkey=CDS;product=FAD--protein FMN transferase;protein_id=WP_000406064.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3054404 3055507 . - . ID=gene3026;Name=SH04_RS15160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15160;old_locus_tag=SH04_15165 NZ_CP010443.1 Protein Homology CDS 3054404 3055507 . - 0 ID=cds2951;Parent=gene3026;Dbxref=Genbank:WP_000865568.1;Name=WP_000865568.1;gbkey=CDS;product=outer membrane protein C;protein_id=WP_000865568.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3055766 3055858 . - . ID=gene3027;Name=SH04_RS15165;end_range=3055858,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS15165;partial=true;pseudo=true NZ_CP010443.1 Protein Homology CDS 3055766 3055858 . - 0 ID=cds2952;Parent=gene3027;end_range=3055858,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=glutamate decarboxylase;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 3055899 3056024 . - . ID=gene3028;Name=SH04_RS15170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15170;old_locus_tag=SH04_15175 NZ_CP010443.1 Protein Homology CDS 3055899 3056024 . - 0 ID=cds2953;Parent=gene3028;Dbxref=Genbank:WP_001750461.1;Name=WP_001750461.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001750461.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3056246 3058918 . + . ID=gene3029;Name=SH04_RS15175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15175;old_locus_tag=SH04_15180 NZ_CP010443.1 Protein Homology CDS 3056246 3058918 . + 0 ID=cds2954;Parent=gene3029;Dbxref=Genbank:WP_001249081.1;Name=WP_001249081.1;gbkey=CDS;product=phosphotransferase RcsD;protein_id=WP_001249081.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3058935 3059585 . + . ID=gene3030;Name=SH04_RS15180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15180;old_locus_tag=SH04_15185 NZ_CP010443.1 Protein Homology CDS 3058935 3059585 . + 0 ID=cds2955;Parent=gene3030;Dbxref=Genbank:WP_001061917.1;Name=WP_001061917.1;Note=two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division%3B probably phosphorylated by RcsC or RcsF;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001061917.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3059785 3062634 . - . ID=gene3031;Name=SH04_RS15185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15185;old_locus_tag=SH04_15190 NZ_CP010443.1 Protein Homology CDS 3059785 3062634 . - 0 ID=cds2956;Parent=gene3031;Dbxref=Genbank:WP_038432618.1;Name=WP_038432618.1;gbkey=CDS;product=histidine kinase;protein_id=WP_038432618.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3062801 3064627 . + . ID=gene3032;Name=SH04_RS15190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15190;old_locus_tag=SH04_15195 NZ_CP010443.1 Protein Homology CDS 3062801 3064627 . + 0 ID=cds2957;Parent=gene3032;Dbxref=Genbank:WP_000559125.1;Name=WP_000559125.1;Note=with AtoC is a member of a two-component regulatory system involved in the transcriptional regulation of the ato genes for acetoacetate metabolism;gbkey=CDS;product=PAS domain-containing two-component system sensor histidine kinase;protein_id=WP_000559125.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3064624 3066009 . + . ID=gene3033;Name=SH04_RS15195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15195;old_locus_tag=SH04_15200 NZ_CP010443.1 Protein Homology CDS 3064624 3066009 . + 0 ID=cds2958;Parent=gene3033;Dbxref=Genbank:WP_000125282.1;Name=WP_000125282.1;Note=DNA-binding response regulator in two-component regulatory system with ZraS%3B response regulator/sigma54 interaction protein;gbkey=CDS;product=acetoacetate metabolism regulatory protein AtoC;protein_id=WP_000125282.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3066205 3066867 . + . ID=gene3034;Name=SH04_RS15200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15200;old_locus_tag=SH04_15205 NZ_CP010443.1 Protein Homology CDS 3066205 3066867 . + 0 ID=cds2959;Parent=gene3034;Dbxref=Genbank:WP_000850540.1;Name=WP_000850540.1;gbkey=CDS;product=acetate CoA-transferase subunit alpha;protein_id=WP_000850540.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3066867 3067517 . + . ID=gene3035;Name=SH04_RS15205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15205;old_locus_tag=SH04_15210 NZ_CP010443.1 Protein Homology CDS 3066867 3067517 . + 0 ID=cds2960;Parent=gene3035;Dbxref=Genbank:WP_000339065.1;Name=WP_000339065.1;gbkey=CDS;product=acetate CoA-transferase subunit beta;protein_id=WP_000339065.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3067514 3068836 . + . ID=gene3036;Name=SH04_RS15210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15210;old_locus_tag=SH04_15215 NZ_CP010443.1 Protein Homology CDS 3067514 3068836 . + 0 ID=cds2961;Parent=gene3036;Dbxref=Genbank:WP_000580275.1;Name=WP_000580275.1;gbkey=CDS;product=short-chain fatty acids transporter;protein_id=WP_000580275.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3068867 3070051 . + . ID=gene3037;Name=SH04_RS15215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15215;old_locus_tag=SH04_15220 NZ_CP010443.1 Protein Homology CDS 3068867 3070051 . + 0 ID=cds2962;Parent=gene3037;Dbxref=Genbank:WP_000786547.1;Name=WP_000786547.1;Note=Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase%2C catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation;gbkey=CDS;product=acetyl-CoA acetyltransferase;protein_id=WP_000786547.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3070125 3070901 . - . ID=gene3038;Name=SH04_RS15220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15220;old_locus_tag=SH04_15225 NZ_CP010443.1 Protein Homology CDS 3070125 3070901 . - 0 ID=cds2963;Parent=gene3038;Dbxref=Genbank:WP_001225852.1;Name=WP_001225852.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001225852.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3070906 3072555 . - . ID=gene3039;Name=SH04_RS15225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15225;old_locus_tag=SH04_15230 NZ_CP010443.1 Protein Homology CDS 3070906 3072555 . - 0 ID=cds2964;Parent=gene3039;Dbxref=Genbank:WP_001104549.1;Name=WP_001104549.1;gbkey=CDS;product=host defense protein;protein_id=WP_001104549.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3072556 3072880 . - . ID=gene3040;Name=SH04_RS15230;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS15230;pseudo=true NZ_CP010443.1 Protein Homology CDS 3072556 3072880 . - 0 ID=cds2965;Parent=gene3040;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 3073056 3077069 . - . ID=gene3041;Name=SH04_RS15235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15235;old_locus_tag=SH04_15240 NZ_CP010443.1 Protein Homology CDS 3073056 3077069 . - 0 ID=cds2966;Parent=gene3041;Dbxref=Genbank:WP_000536562.1;Name=WP_000536562.1;gbkey=CDS;product=membrane protein;protein_id=WP_000536562.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3077093 3077716 . - . ID=gene3042;Name=SH04_RS15240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15240;old_locus_tag=SH04_15245 NZ_CP010443.1 Protein Homology CDS 3077093 3077716 . - 0 ID=cds2967;Parent=gene3042;Dbxref=Genbank:WP_001295211.1;Name=WP_001295211.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295211.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3077713 3079401 . - . ID=gene3043;Name=SH04_RS15245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15245;old_locus_tag=SH04_15250 NZ_CP010443.1 Protein Homology CDS 3077713 3079401 . - 0 ID=cds2968;Parent=gene3043;Dbxref=Genbank:WP_000012305.1;Name=WP_000012305.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000012305.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3079550 3082177 . - . ID=gene3044;Name=SH04_RS15250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15250;old_locus_tag=SH04_15255 NZ_CP010443.1 Protein Homology CDS 3079550 3082177 . - 0 ID=cds2969;Parent=gene3044;Dbxref=Genbank:WP_046377551.1;Name=WP_046377551.1;gbkey=CDS;product=DNA gyrase subunit A;protein_id=WP_046377551.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3082324 3083046 . + . ID=gene3045;Name=SH04_RS15255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15255;old_locus_tag=SH04_15260 NZ_CP010443.1 Protein Homology CDS 3082324 3083046 . + 0 ID=cds2970;Parent=gene3045;Dbxref=Genbank:WP_000990765.1;Name=WP_000990765.1;Note=Involved in ubiquinone biosynthesis;gbkey=CDS;product=ubiquinone biosynthesis O-methyltransferase;protein_id=WP_000990765.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3083174 3086926 . - . ID=gene3046;Name=SH04_RS15260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15260;old_locus_tag=SH04_15265 NZ_CP010443.1 Protein Homology CDS 3083174 3086926 . - 0 ID=cds2971;Parent=gene3046;Dbxref=Genbank:WP_001220077.1;Name=WP_001220077.1;gbkey=CDS;product=adhesin;protein_id=WP_001220077.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3087398 3087541 . + . ID=gene3047;Name=SH04_RS15265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15265;old_locus_tag=SH04_15270 NZ_CP010443.1 Protein Homology CDS 3087398 3087541 . + 0 ID=cds2972;Parent=gene3047;Dbxref=Genbank:WP_032083391.1;Name=WP_032083391.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032083391.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3087622 3089907 . + . ID=gene3048;Name=SH04_RS15270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15270;old_locus_tag=SH04_15275 NZ_CP010443.1 Protein Homology CDS 3087622 3089907 . + 0 ID=cds2973;Parent=gene3048;Dbxref=Genbank:WP_001075164.1;Name=WP_001075164.1;Note=Catalyzes the rate-limiting step in dNTP synthesis;gbkey=CDS;product=ribonucleoside-diphosphate reductase 1 subunit alpha;protein_id=WP_001075164.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3090141 3091271 . + . ID=gene3049;Name=SH04_RS15275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15275;old_locus_tag=SH04_15280 NZ_CP010443.1 Protein Homology CDS 3090141 3091271 . + 0 ID=cds2974;Parent=gene3049;Dbxref=Genbank:WP_000332037.1;Name=WP_000332037.1;Note=B2 or R2 protein%3B type 1a enzyme%3B catalyzes the rate-limiting step in dNTP synthesis%3B converts nucleotides to deoxynucleotides%3B forms a homodimer and then a multimeric complex with NrdA;gbkey=CDS;product=ribonucleoside-diphosphate reductase 1 subunit beta;protein_id=WP_000332037.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3091271 3091525 . + . ID=gene3050;Name=SH04_RS15280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15280;old_locus_tag=SH04_15285 NZ_CP010443.1 Protein Homology CDS 3091271 3091525 . + 0 ID=cds2975;Parent=gene3050;Dbxref=Genbank:WP_000135040.1;Name=WP_000135040.1;Note=plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor%2C essential for nucleotide reduction catalyzed by ribonucleotide reductases;gbkey=CDS;product=ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance;protein_id=WP_000135040.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3091579 3092229 . - . ID=gene3051;Name=SH04_RS15285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15285;old_locus_tag=SH04_15290 NZ_CP010443.1 Protein Homology CDS 3091579 3092229 . - 0 ID=cds2976;Parent=gene3051;Dbxref=Genbank:WP_000301050.1;Name=WP_000301050.1;gbkey=CDS;product=protein InaA;protein_id=WP_000301050.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3092444 3092650 . + . ID=gene3052;Name=SH04_RS15290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15290;old_locus_tag=SH04_15295 NZ_CP010443.1 Protein Homology CDS 3092444 3092650 . + 0 ID=cds2977;Parent=gene3052;Dbxref=Genbank:WP_001009397.1;Name=WP_001009397.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001009397.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3092692 3093768 . - . ID=gene3053;Name=glpQ;gbkey=Gene;gene=glpQ;gene_biotype=protein_coding;locus_tag=SH04_RS15295;old_locus_tag=SH04_15300 NZ_CP010443.1 Protein Homology CDS 3092692 3093768 . - 0 ID=cds2978;Parent=gene3053;Dbxref=Genbank:WP_000779105.1;Name=WP_000779105.1;Note=hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols%3B periplasmic;gbkey=CDS;gene=glpQ;product=glycerophosphoryl diester phosphodiesterase;protein_id=WP_000779105.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3093773 3095131 . - . ID=gene3054;Name=glpT;gbkey=Gene;gene=glpT;gene_biotype=protein_coding;locus_tag=SH04_RS15300;old_locus_tag=SH04_15305 NZ_CP010443.1 Protein Homology CDS 3093773 3095131 . - 0 ID=cds2979;Parent=gene3054;Dbxref=Genbank:WP_000948731.1;Name=WP_000948731.1;Note=catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell;gbkey=CDS;gene=glpT;product=glycerol-3-phosphate transporter;protein_id=WP_000948731.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3095404 3097032 . + . ID=gene3055;Name=glpA;gbkey=Gene;gene=glpA;gene_biotype=protein_coding;locus_tag=SH04_RS15305;old_locus_tag=SH04_15310 NZ_CP010443.1 Protein Homology CDS 3095404 3097032 . + 0 ID=cds2980;Parent=gene3055;Dbxref=Genbank:WP_000857257.1;Name=WP_000857257.1;Note=anaerobic%2C catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor;gbkey=CDS;gene=glpA;product=anaerobic glycerol-3-phosphate dehydrogenase subunit A;protein_id=WP_000857257.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3097022 3098281 . + . ID=gene3056;Name=SH04_RS15310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15310;old_locus_tag=SH04_15315 NZ_CP010443.1 Protein Homology CDS 3097022 3098281 . + 0 ID=cds2981;Parent=gene3056;Dbxref=Genbank:WP_001209927.1;Name=WP_001209927.1;Note=sn-glycerol-3-phosphate dehydrogenase (anaerobic)%3B catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate%3B part of GlpABC complex%3B presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters;gbkey=CDS;product=anaerobic glycerol-3-phosphate dehydrogenase subunit B;protein_id=WP_001209927.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3098278 3099468 . + . ID=gene3057;Name=glpC;gbkey=Gene;gene=glpC;gene_biotype=protein_coding;locus_tag=SH04_RS15315;old_locus_tag=SH04_15320 NZ_CP010443.1 Protein Homology CDS 3098278 3099468 . + 0 ID=cds2982;Parent=gene3057;Dbxref=Genbank:WP_001000379.1;Name=WP_001000379.1;Note=anaerobic%3B with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate;gbkey=CDS;gene=glpC;product=anaerobic glycerol-3-phosphate dehydrogenase subunit C;protein_id=WP_001000379.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3099661 3100560 . + . ID=gene3058;Name=SH04_RS15320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15320;old_locus_tag=SH04_15325 NZ_CP010443.1 Protein Homology CDS 3099661 3100560 . + 0 ID=cds2983;Parent=gene3058;Dbxref=Genbank:WP_000140592.1;Name=WP_000140592.1;gbkey=CDS;product=transposase;protein_id=WP_000140592.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3100573 3100758 . + . ID=gene3059;Name=SH04_RS15325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15325;old_locus_tag=SH04_15330 NZ_CP010443.1 Protein Homology CDS 3100573 3100758 . + 0 ID=cds2984;Parent=gene3059;Dbxref=Genbank:WP_000150333.1;Name=WP_000150333.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000150333.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3100799 3101602 . - . ID=gene3060;Name=SH04_RS15330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15330;old_locus_tag=SH04_15335 NZ_CP010443.1 Protein Homology CDS 3100799 3101602 . - 0 ID=cds2985;Parent=gene3060;Dbxref=Genbank:WP_000992954.1;Name=WP_000992954.1;Note=catalyzes the retro-aldol cleavage of 2-keto-3-deoxy-L-rhamnonate to pyruvate and lactaldehyde;gbkey=CDS;product=2-keto-3-deoxy-L-rhamnonate aldolase;protein_id=WP_000992954.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3101620 3102909 . - . ID=gene3061;Name=SH04_RS15335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15335;old_locus_tag=SH04_15340 NZ_CP010443.1 Protein Homology CDS 3101620 3102909 . - 0 ID=cds2986;Parent=gene3061;Dbxref=Genbank:WP_000100890.1;Name=WP_000100890.1;gbkey=CDS;product=transporter;protein_id=WP_000100890.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3102966 3104170 . - . ID=gene3062;Name=SH04_RS15340;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS15340;pseudo=true NZ_CP010443.1 Protein Homology CDS 3102966 3104170 . - 0 ID=cds2987;Parent=gene3062;Note=catalyzes the formation of 2-keto-3-deoxy-L-rhamnonate from L-rhamnonate;exception=annotated by transcript or proteomic data;gbkey=CDS;product=rhamnonate dehydratase;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 3104185 3104967 . - . ID=gene3063;Name=SH04_RS15345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15345;old_locus_tag=SH04_15350 NZ_CP010443.1 Protein Homology CDS 3104185 3104967 . - 0 ID=cds2988;Parent=gene3063;Dbxref=Genbank:WP_000894185.1;Name=WP_000894185.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000894185.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3105187 3106389 . - . ID=gene3064;Name=SH04_RS15350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15350;old_locus_tag=SH04_15355 NZ_CP010443.1 Protein Homology CDS 3105187 3106389 . - 0 ID=cds2989;Parent=gene3064;Dbxref=Genbank:WP_000921621.1;Name=WP_000921621.1;gbkey=CDS;product=inactive PncC family protein;protein_id=WP_000921621.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3106489 3107031 . - . ID=gene3065;Name=SH04_RS15355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15355;old_locus_tag=SH04_15360 NZ_CP010443.1 Protein Homology CDS 3106489 3107031 . - 0 ID=cds2990;Parent=gene3065;Dbxref=Genbank:WP_001300392.1;Name=WP_001300392.1;gbkey=CDS;product=porin;protein_id=WP_001300392.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3107310 3107735 . + . ID=gene3066;Name=SH04_RS15360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15360;old_locus_tag=SH04_15365 NZ_CP010443.1 Protein Homology CDS 3107310 3107735 . + 0 ID=cds2991;Parent=gene3066;Dbxref=Genbank:WP_001300564.1;Name=WP_001300564.1;Note=catalyzes the hydrolysis of nucleoside triphosphates;gbkey=CDS;product=nucleoside triphosphatase;protein_id=WP_001300564.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3107774 3108376 . - . ID=gene3067;Name=SH04_RS15365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15365;old_locus_tag=SH04_15370 NZ_CP010443.1 Protein Homology CDS 3107774 3108376 . - 0 ID=cds2992;Parent=gene3067;Dbxref=Genbank:WP_000879112.1;Name=WP_000879112.1;Note=catalyzes the of heptose(II) of the outer membrane lipopolysaccharide core;gbkey=CDS;product=LPS core heptose(II)-phosphate phosphatase;protein_id=WP_000879112.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3108684 3109823 . + . ID=gene3068;Name=SH04_RS15370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15370;old_locus_tag=SH04_15375 NZ_CP010443.1 Protein Homology CDS 3108684 3109823 . + 0 ID=cds2993;Parent=gene3068;Dbxref=Genbank:WP_001295286.1;Name=WP_001295286.1;Note=catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose;gbkey=CDS;product=UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase;protein_id=WP_001295286.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3109827 3110795 . + . ID=gene3069;Name=SH04_RS15375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15375;old_locus_tag=SH04_15380 NZ_CP010443.1 Protein Homology CDS 3109827 3110795 . + 0 ID=cds2994;Parent=gene3069;Dbxref=Genbank:WP_000461657.1;Name=WP_000461657.1;Note=catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate;gbkey=CDS;product=undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase;protein_id=WP_000461657.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3110795 3112777 . + . ID=gene3070;Name=SH04_RS15380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15380;old_locus_tag=SH04_15385 NZ_CP010443.1 Protein Homology CDS 3110795 3112777 . + 0 ID=cds2995;Parent=gene3070;Dbxref=Genbank:WP_000860273.1;Name=WP_000860273.1;Note=Bifunctional polymyxin resistance arnA protein%3B catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose%3B active in certain mutant strains;gbkey=CDS;product=bifunctional polymyxin resistance protein ArnA;protein_id=WP_000860273.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3112774 3113664 . + . ID=gene3071;Name=SH04_RS15385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15385;old_locus_tag=SH04_15390 NZ_CP010443.1 Protein Homology CDS 3112774 3113664 . + 0 ID=cds2996;Parent=gene3071;Dbxref=Genbank:WP_000169728.1;Name=WP_000169728.1;Note=catalyzes the formation of 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol;gbkey=CDS;product=4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD;protein_id=WP_000169728.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3113664 3115316 . + . ID=gene3072;Name=arnT;gbkey=Gene;gene=arnT;gene_biotype=protein_coding;locus_tag=SH04_RS15390;old_locus_tag=SH04_15395 NZ_CP010443.1 Protein Homology CDS 3113664 3115316 . + 0 ID=cds2997;Parent=gene3072;Dbxref=Genbank:WP_000844057.1;Name=WP_000844057.1;Note=catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A;gbkey=CDS;gene=arnT;product=undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase;protein_id=WP_000844057.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3115313 3115648 . + . ID=gene3073;Name=SH04_RS15395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15395;old_locus_tag=SH04_15400 NZ_CP010443.1 Protein Homology CDS 3115313 3115648 . + 0 ID=cds2998;Parent=gene3073;Dbxref=Genbank:WP_000638031.1;Name=WP_000638031.1;Note=with ArnE is involved in transporting 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from the cytoplasmic face to the periplasmic face of the inner membrane;gbkey=CDS;product=4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE;protein_id=WP_000638031.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3115648 3116034 . + . ID=gene3074;Name=SH04_RS15400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15400;old_locus_tag=SH04_15405 NZ_CP010443.1 Protein Homology CDS 3115648 3116034 . + 0 ID=cds2999;Parent=gene3074;Dbxref=Genbank:WP_000523880.1;Name=WP_000523880.1;Note=with ArnE is responsible for the transport of 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from the cytoplasm to the periplasm;gbkey=CDS;product=4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF;protein_id=WP_000523880.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3116028 3116294 . - . ID=gene3075;Name=SH04_RS15405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15405;old_locus_tag=SH04_15410 NZ_CP010443.1 Protein Homology CDS 3116028 3116294 . - 0 ID=cds3000;Parent=gene3075;Dbxref=Genbank:WP_001295285.1;Name=WP_001295285.1;Note=with BasR regulates genes involved in polymyxin resistance;gbkey=CDS;product=signal transduction protein PmrD;protein_id=WP_001295285.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3116404 3117759 . - . ID=gene3076;Name=SH04_RS15410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15410;old_locus_tag=SH04_15415 NZ_CP010443.1 Protein Homology CDS 3116404 3117759 . - 0 ID=cds3001;Parent=gene3076;Dbxref=Genbank:WP_000577625.1;Name=WP_000577625.1;gbkey=CDS;product=2-succinylbenzoate--CoA ligase;protein_id=WP_000577625.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3117756 3118718 . - . ID=gene3077;Name=SH04_RS15415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15415;old_locus_tag=SH04_15420 NZ_CP010443.1 Protein Homology CDS 3117756 3118718 . - 0 ID=cds3002;Parent=gene3077;Dbxref=Genbank:WP_001255628.1;Name=WP_001255628.1;Note=catalyzes the dehydration of 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate;gbkey=CDS;product=o-succinylbenzoate synthase;protein_id=WP_001255628.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3118718 3119575 . - . ID=gene3078;Name=SH04_RS15420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15420;old_locus_tag=SH04_15425 NZ_CP010443.1 Protein Homology CDS 3118718 3119575 . - 0 ID=cds3003;Parent=gene3078;Dbxref=Genbank:WP_000639996.1;Name=WP_000639996.1;Note=catalyzes the formation of 1%2C4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA;gbkey=CDS;product=1%2C4-dihydroxy-2-naphthoyl-CoA synthase;protein_id=WP_000639996.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3119590 3120348 . - . ID=gene3079;Name=SH04_RS15425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15425;old_locus_tag=SH04_15430 NZ_CP010443.1 Protein Homology CDS 3119590 3120348 . - 0 ID=cds3004;Parent=gene3079;Dbxref=Genbank:WP_000600499.1;Name=WP_000600499.1;Note=catalyzes the formation of (1 R%2C6 R)-2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate in menaquinone biosynthesis;gbkey=CDS;product=2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase;protein_id=WP_000600499.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3120345 3122015 . - . ID=gene3080;Name=SH04_RS15430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15430;old_locus_tag=SH04_15435 NZ_CP010443.1 Protein Homology CDS 3120345 3122015 . - 0 ID=cds3005;Parent=gene3080;Dbxref=Genbank:WP_001295284.1;Name=WP_001295284.1;Note=SEPHCHC synthase%3B forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis;gbkey=CDS;product=2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase;protein_id=WP_001295284.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3122104 3123399 . - . ID=gene3081;Name=SH04_RS15435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15435;old_locus_tag=SH04_15440 NZ_CP010443.1 Protein Homology CDS 3122104 3123399 . - 0 ID=cds3006;Parent=gene3081;Dbxref=Genbank:WP_001191419.1;Name=WP_001191419.1;gbkey=CDS;product=isochorismate synthase MenF;protein_id=WP_001191419.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3123478 3123783 . - . ID=gene3082;Name=SH04_RS15440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15440;old_locus_tag=SH04_15445 NZ_CP010443.1 Protein Homology CDS 3123478 3123783 . - 0 ID=cds3007;Parent=gene3082;Dbxref=Genbank:WP_000070621.1;Name=WP_000070621.1;gbkey=CDS;product=protein ElaB;protein_id=WP_000070621.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3123838 3124299 . - . ID=gene3083;Name=SH04_RS15445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15445;old_locus_tag=SH04_15450 NZ_CP010443.1 Protein Homology CDS 3123838 3124299 . - 0 ID=cds3008;Parent=gene3083;Dbxref=Genbank:WP_000574091.1;Name=WP_000574091.1;gbkey=CDS;product=protein ElaA;protein_id=WP_000574091.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3124364 3125281 . + . ID=gene3084;Name=SH04_RS15450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15450;old_locus_tag=SH04_15455 NZ_CP010443.1 Protein Homology CDS 3124364 3125281 . + 0 ID=cds3009;Parent=gene3084;Dbxref=Genbank:WP_001300687.1;Name=WP_001300687.1;Note=RNase BN%3B member of metallo-beta-lactamase family%3B the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase%3B in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not%3B associates with two zinc ions;gbkey=CDS;product=hypothetical protein;protein_id=WP_001300687.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3125472 3126680 . + . ID=gene3085;Name=SH04_RS15455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15455;old_locus_tag=SH04_15460 NZ_CP010443.1 Protein Homology CDS 3125472 3126680 . + 0 ID=cds3010;Parent=gene3085;Dbxref=Genbank:WP_000259207.1;Name=WP_000259207.1;Note=ElaD%3B specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins%3B SseL in Salmonella is required for macrophage killing and virulence%2C and it is secreted by the salmonella pathogenicity island 2 type III secretion system;gbkey=CDS;product=deubiquitinase;protein_id=WP_000259207.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3126751 3128478 . - . ID=gene3086;Name=SH04_RS15460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15460;old_locus_tag=SH04_15465 NZ_CP010443.1 Protein Homology CDS 3126751 3128478 . - 0 ID=cds3011;Parent=gene3086;Dbxref=Genbank:WP_001244806.1;Name=WP_001244806.1;gbkey=CDS;product=VWA domain-containing protein;protein_id=WP_001244806.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3128616 3129587 . + . ID=gene3087;Name=SH04_RS15465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15465;old_locus_tag=SH04_15470 NZ_CP010443.1 Protein Homology CDS 3128616 3129587 . + 0 ID=cds3012;Parent=gene3087;Dbxref=Genbank:WP_000719999.1;Name=WP_000719999.1;gbkey=CDS;product=M28A family peptidase;protein_id=WP_000719999.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3129690 3130193 . + . ID=gene3088;Name=SH04_RS15470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15470;old_locus_tag=SH04_15475 NZ_CP010443.1 Protein Homology CDS 3129690 3130193 . + 0 ID=cds3013;Parent=gene3088;Dbxref=Genbank:WP_000525360.1;Name=WP_000525360.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000525360.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3130466 3131182 . - . ID=gene3089;Name=SH04_RS15475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15475;old_locus_tag=SH04_15480 NZ_CP010443.1 Protein Homology CDS 3130466 3131182 . - 0 ID=cds3014;Parent=gene3089;Dbxref=Genbank:WP_000455114.1;Name=WP_000455114.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000455114.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3131391 3131813 . + . ID=gene3090;Name=SH04_RS15480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15480;old_locus_tag=SH04_15485 NZ_CP010443.1 Protein Homology CDS 3131391 3131813 . + 0 ID=cds3015;Parent=gene3090;Dbxref=Genbank:WP_000188051.1;Name=WP_000188051.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000188051.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3131872 3132720 . + . ID=gene3091;Name=SH04_RS15485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15485;old_locus_tag=SH04_15490 NZ_CP010443.1 Protein Homology CDS 3131872 3132720 . + 0 ID=cds3016;Parent=gene3091;Dbxref=Genbank:WP_000767280.1;Name=WP_000767280.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000767280.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3132804 3134261 . - . ID=gene3092;Name=SH04_RS15490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15490;old_locus_tag=SH04_15495 NZ_CP010443.1 Protein Homology CDS 3132804 3134261 . - 0 ID=cds3017;Parent=gene3092;Dbxref=Genbank:WP_000156701.1;Name=WP_000156701.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit N;protein_id=WP_000156701.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3134268 3135797 . - . ID=gene3093;Name=SH04_RS15495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15495;old_locus_tag=SH04_15500 NZ_CP010443.1 Protein Homology CDS 3134268 3135797 . - 0 ID=cds3018;Parent=gene3093;Dbxref=Genbank:WP_038432621.1;Name=WP_038432621.1;gbkey=CDS;product=NADH:ubiquinone oxidoreductase subunit M;protein_id=WP_038432621.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3135961 3137802 . - . ID=gene3094;Name=SH04_RS15500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15500;old_locus_tag=SH04_15505 NZ_CP010443.1 Protein Homology CDS 3135961 3137802 . - 0 ID=cds3019;Parent=gene3094;Dbxref=Genbank:WP_001056643.1;Name=WP_001056643.1;Note=Catalyzes the transfer of electrons from NADH to ubiquinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit L;protein_id=WP_001056643.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3137799 3138101 . - . ID=gene3095;Name=SH04_RS15505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15505;old_locus_tag=SH04_15510 NZ_CP010443.1 Protein Homology CDS 3137799 3138101 . - 0 ID=cds3020;Parent=gene3095;Dbxref=Genbank:WP_000612644.1;Name=WP_000612644.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit K;protein_id=WP_000612644.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3138098 3138652 . - . ID=gene3096;Name=SH04_RS15510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15510;old_locus_tag=SH04_15515 NZ_CP010443.1 Protein Homology CDS 3138098 3138652 . - 0 ID=cds3021;Parent=gene3096;Dbxref=Genbank:WP_000393511.1;Name=WP_000393511.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit J;protein_id=WP_000393511.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3138664 3139206 . - . ID=gene3097;Name=SH04_RS15515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15515;old_locus_tag=SH04_15520 NZ_CP010443.1 Protein Homology CDS 3138664 3139206 . - 0 ID=cds3022;Parent=gene3097;Dbxref=Genbank:WP_000172749.1;Name=WP_000172749.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit I;protein_id=WP_000172749.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3139221 3140198 . - . ID=gene3098;Name=SH04_RS15520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15520;old_locus_tag=SH04_15525 NZ_CP010443.1 Protein Homology CDS 3139221 3140198 . - 0 ID=cds3023;Parent=gene3098;Dbxref=Genbank:WP_000118507.1;Name=WP_000118507.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit H;protein_id=WP_000118507.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3140195 3142921 . - . ID=gene3099;Name=SH04_RS15525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15525;old_locus_tag=SH04_15530 NZ_CP010443.1 Protein Homology CDS 3140195 3142921 . - 0 ID=cds3024;Parent=gene3099;Dbxref=Genbank:WP_000190939.1;Name=WP_000190939.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit G;protein_id=WP_000190939.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3142974 3144311 . - . ID=gene3100;Name=SH04_RS15530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15530;old_locus_tag=SH04_15535 NZ_CP010443.1 Protein Homology CDS 3142974 3144311 . - 0 ID=cds3025;Parent=gene3100;Dbxref=Genbank:WP_000789500.1;Name=WP_000789500.1;Note=part of NADH-ubiquinone oxidoreductase complex I%3B shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B NuoF is part of the soluble NADH dehydrogenase fragment%2C which represents the electron input part of NADH dehydrogenase;gbkey=CDS;product=NADH-quinone oxidoreductase subunit F;protein_id=WP_000789500.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3144308 3144808 . - . ID=gene3101;Name=SH04_RS15535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15535;old_locus_tag=SH04_15540 NZ_CP010443.1 Protein Homology CDS 3144308 3144808 . - 0 ID=cds3026;Parent=gene3101;Dbxref=Genbank:WP_000545042.1;Name=WP_000545042.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit E;protein_id=WP_000545042.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3144811 3146601 . - . ID=gene3102;Name=SH04_RS15540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15540;old_locus_tag=SH04_15545 NZ_CP010443.1 Protein Homology CDS 3144811 3146601 . - 0 ID=cds3027;Parent=gene3102;Dbxref=Genbank:WP_001384057.1;Name=WP_001384057.1;Note=NuoCD%3B NDH-1 shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B subunits NuoCD%2C E%2C F%2C and G constitute the peripheral sector of the complex%3B in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms;gbkey=CDS;product=NADH-quinone oxidoreductase subunit C/D;protein_id=WP_001384057.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3146707 3147369 . - . ID=gene3103;Name=SH04_RS15545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15545;old_locus_tag=SH04_15550 NZ_CP010443.1 Protein Homology CDS 3146707 3147369 . - 0 ID=cds3028;Parent=gene3103;Dbxref=Genbank:WP_000386733.1;Name=WP_000386733.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit B;protein_id=WP_000386733.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3147385 3147828 . - . ID=gene3104;Name=SH04_RS15550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15550;old_locus_tag=SH04_15555 NZ_CP010443.1 Protein Homology CDS 3147385 3147828 . - 0 ID=cds3029;Parent=gene3104;Dbxref=Genbank:WP_000062997.1;Name=WP_000062997.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit A;protein_id=WP_000062997.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3148459 3149397 . - . ID=gene3105;Name=SH04_RS15555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15555;old_locus_tag=SH04_15560 NZ_CP010443.1 Protein Homology CDS 3148459 3149397 . - 0 ID=cds3030;Parent=gene3105;Dbxref=Genbank:WP_000622280.1;Name=WP_000622280.1;Note=involved in the regulation of genes involved in flagella synthesis%2C motility and chemotaxis;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000622280.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3150317 3151534 . + . ID=gene3106;Name=SH04_RS15560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15560;old_locus_tag=SH04_15565 NZ_CP010443.1 Protein Homology CDS 3150317 3151534 . + 0 ID=cds3031;Parent=gene3106;Dbxref=Genbank:WP_000074527.1;Name=WP_000074527.1;Note=broad specificity%3B family IV%3B in Corynebacterium glutamicum this protein can use glutamate%2C 2-aminobutyrate%2C and aspartate as amino donors and pyruvate as the acceptor;gbkey=CDS;product=glutamate--pyruvate aminotransferase AlaA;protein_id=WP_000074527.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3151618 3152217 . + . ID=gene3107;Name=SH04_RS15565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15565;old_locus_tag=SH04_15570 NZ_CP010443.1 Protein Homology CDS 3151618 3152217 . + 0 ID=cds3032;Parent=gene3107;Dbxref=Genbank:WP_000813859.1;Name=WP_000813859.1;gbkey=CDS;product=5'-deoxynucleotidase YfbR;protein_id=WP_000813859.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3152276 3154108 . - . ID=gene3108;Name=SH04_RS15570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15570;old_locus_tag=SH04_15575 NZ_CP010443.1 Protein Homology CDS 3152276 3154108 . - 0 ID=cds3033;Parent=gene3108;Dbxref=Genbank:WP_001012899.1;Name=WP_001012899.1;gbkey=CDS;product=transporter;protein_id=WP_001012899.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3154195 3154845 . - . ID=gene3109;Name=SH04_RS15575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15575;old_locus_tag=SH04_15580 NZ_CP010443.1 Protein Homology CDS 3154195 3154845 . - 0 ID=cds3034;Parent=gene3109;Dbxref=Genbank:WP_001203392.1;Name=WP_001203392.1;gbkey=CDS;product=sugar phosphatase YfbT;protein_id=WP_001203392.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3154856 3155350 . - . ID=gene3110;Name=SH04_RS15580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15580;old_locus_tag=SH04_15585 NZ_CP010443.1 Protein Homology CDS 3154856 3155350 . - 0 ID=cds3035;Parent=gene3110;Dbxref=Genbank:WP_000426124.1;Name=WP_000426124.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000426124.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3155433 3155888 . - . ID=gene3111;Name=SH04_RS15585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15585;old_locus_tag=SH04_15590 NZ_CP010443.1 Protein Homology CDS 3155433 3155888 . - 0 ID=cds3036;Parent=gene3111;Dbxref=Genbank:WP_000106627.1;Name=WP_000106627.1;gbkey=CDS;product=membrane protein;protein_id=WP_000106627.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3155957 3156088 . - . ID=gene3112;Name=SH04_RS15590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15590;old_locus_tag=SH04_15595 NZ_CP010443.1 Protein Homology CDS 3155957 3156088 . - 0 ID=cds3037;Parent=gene3112;Dbxref=Genbank:WP_001115612.1;Name=WP_001115612.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001115612.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3156226 3157428 . + . ID=gene3113;Name=SH04_RS15595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15595;old_locus_tag=SH04_15600 NZ_CP010443.1 Protein Homology CDS 3156226 3157428 . + 0 ID=cds3038;Parent=gene3113;Dbxref=Genbank:WP_000095707.1;Name=WP_000095707.1;Note=AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation%3B utilizes magnesium and ATP%3B also involved in conversion of acetate to aceyl-CoA%3B also known to act on propionate;gbkey=CDS;product=acetate kinase;protein_id=WP_000095707.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3157503 3159647 . + . ID=gene3114;Name=SH04_RS15600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15600;old_locus_tag=SH04_15605 NZ_CP010443.1 Protein Homology CDS 3157503 3159647 . + 0 ID=cds3039;Parent=gene3114;Dbxref=Genbank:WP_000086722.1;Name=WP_000086722.1;Note=catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate%3B when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate;gbkey=CDS;product=phosphate acetyltransferase;protein_id=WP_000086722.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3159837 3161357 . + . ID=gene3115;Name=SH04_RS15605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15605;old_locus_tag=SH04_15610 NZ_CP010443.1 Protein Homology CDS 3159837 3161357 . + 0 ID=cds3040;Parent=gene3115;Dbxref=Genbank:WP_001274493.1;Name=WP_001274493.1;gbkey=CDS;product=inner membrane transporter%3B C4-dicarboxylate anaerobic carrier family protein;protein_id=WP_001274493.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3161390 3161932 . - . ID=gene3116;Name=SH04_RS15610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15610;old_locus_tag=SH04_15615 NZ_CP010443.1 Protein Homology CDS 3161390 3161932 . - 0 ID=cds3041;Parent=gene3116;Dbxref=Genbank:WP_000437935.1;Name=WP_000437935.1;gbkey=CDS;product=NUDIX hydrolase;protein_id=WP_000437935.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3161990 3162541 . - . ID=gene3117;Name=SH04_RS15615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15615;old_locus_tag=SH04_15620 NZ_CP010443.1 Protein Homology CDS 3161990 3162541 . - 0 ID=cds3042;Parent=gene3117;Dbxref=Genbank:WP_000772452.1;Name=WP_000772452.1;gbkey=CDS;product=phosphodiesterase;protein_id=WP_000772452.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3162597 3163241 . - . ID=gene3118;Name=SH04_RS15620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15620;old_locus_tag=SH04_15625 NZ_CP010443.1 Protein Homology CDS 3162597 3163241 . - 0 ID=cds3043;Parent=gene3118;Dbxref=Genbank:WP_000042442.1;Name=WP_000042442.1;Note=catalyzes the formation of 2%2C4-dinitrophenyl-S-glutathione from 1-chloro-2%2C4-dinitrobenzene and glutathione;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_000042442.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3163377 3164024 . + . ID=gene3119;Name=SH04_RS15625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15625;old_locus_tag=SH04_15630 NZ_CP010443.1 Protein Homology CDS 3163377 3164024 . + 0 ID=cds3044;Parent=gene3119;Dbxref=Genbank:WP_000566471.1;Name=WP_000566471.1;gbkey=CDS;product=disulfide-bond oxidoreductase YfcG;protein_id=WP_000566471.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3164081 3164443 . + . ID=gene3120;Name=folX;gbkey=Gene;gene=folX;gene_biotype=protein_coding;locus_tag=SH04_RS15630;old_locus_tag=SH04_15635 NZ_CP010443.1 Protein Homology CDS 3164081 3164443 . + 0 ID=cds3045;Parent=gene3120;Dbxref=Genbank:WP_000068457.1;Name=WP_000068457.1;Note=catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate;gbkey=CDS;gene=folX;product=D-erythro-7%2C8-dihydroneopterin triphosphate epimerase;protein_id=WP_000068457.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3164464 3165357 . + . ID=gene3121;Name=SH04_RS15635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15635;old_locus_tag=SH04_15640 NZ_CP010443.1 Protein Homology CDS 3164464 3165357 . + 0 ID=cds3046;Parent=gene3121;Dbxref=Genbank:WP_001028341.1;Name=WP_001028341.1;gbkey=CDS;product=epimerase;protein_id=WP_001028341.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3165405 3166295 . - . ID=gene3122;Name=SH04_RS15640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15640;old_locus_tag=SH04_15645 NZ_CP010443.1 Protein Homology CDS 3165405 3166295 . - 0 ID=cds3047;Parent=gene3122;Dbxref=Genbank:WP_000156149.1;Name=WP_000156149.1;gbkey=CDS;product=transposase;protein_id=WP_000156149.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3166492 3167265 . - . ID=gene3123;Name=SH04_RS15645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15645;old_locus_tag=SH04_15650 NZ_CP010443.1 Protein Homology CDS 3166492 3167265 . - 0 ID=cds3048;Parent=gene3123;Dbxref=Genbank:WP_038432623.1;Name=WP_038432623.1;gbkey=CDS;product=histidine transport ATP-binding protein HisP;protein_id=WP_038432623.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3167273 3167989 . - . ID=gene3124;Name=SH04_RS15650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15650;old_locus_tag=SH04_15655 NZ_CP010443.1 Protein Homology CDS 3167273 3167989 . - 0 ID=cds3049;Parent=gene3124;Dbxref=Genbank:WP_000569958.1;Name=WP_000569958.1;Note=with HisJPQ is involved in transport of histidine%2C lysine%2C arginine and ornithine;gbkey=CDS;product=histidine ABC transporter permease;protein_id=WP_000569958.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3167986 3168672 . - . ID=gene3125;Name=SH04_RS15655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15655;old_locus_tag=SH04_15660 NZ_CP010443.1 Protein Homology CDS 3167986 3168672 . - 0 ID=cds3050;Parent=gene3125;Dbxref=Genbank:WP_000965522.1;Name=WP_000965522.1;Note=with HisJMP is involved in the transport of histidine/lysine/arginine/ornithine;gbkey=CDS;product=histidine ABC transporter permease;protein_id=WP_000965522.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3168762 3169544 . - . ID=gene3126;Name=SH04_RS15660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15660;old_locus_tag=SH04_15665 NZ_CP010443.1 Protein Homology CDS 3168762 3169544 . - 0 ID=cds3051;Parent=gene3126;Dbxref=Genbank:WP_000737621.1;Name=WP_000737621.1;Note=with HisPMQ is involved in the transport of histidine;gbkey=CDS;product=histidine-binding periplasmic protein;protein_id=WP_000737621.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3169765 3170547 . - . ID=gene3127;Name=SH04_RS15665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15665;old_locus_tag=SH04_15670 NZ_CP010443.1 Protein Homology CDS 3169765 3170547 . - 0 ID=cds3052;Parent=gene3127;Dbxref=Genbank:WP_000748271.1;Name=WP_000748271.1;Note=with HisPMQ is involved in the transport of histidine;gbkey=CDS;product=lysine/arginine/ornithine-binding periplasmic protein;protein_id=WP_000748271.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3170813 3171382 . - . ID=gene3128;Name=SH04_RS15670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15670;old_locus_tag=SH04_15675 NZ_CP010443.1 Protein Homology CDS 3170813 3171382 . - 0 ID=cds3053;Parent=gene3128;Dbxref=Genbank:WP_000825700.1;Name=WP_000825700.1;Note=catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate;gbkey=CDS;product=3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein;protein_id=WP_000825700.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3171477 3172994 . - . ID=gene3129;Name=SH04_RS15675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15675;old_locus_tag=SH04_15680 NZ_CP010443.1 Protein Homology CDS 3171477 3172994 . - 0 ID=cds3054;Parent=gene3129;Dbxref=Genbank:WP_000334220.1;Name=WP_000334220.1;Note=Catalyzes first step of the de novo purine nucleotide biosynthetic pathway;gbkey=CDS;product=amidophosphoribosyltransferase;protein_id=WP_000334220.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3173031 3173519 . - . ID=gene3130;Name=SH04_RS15680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15680;old_locus_tag=SH04_15685 NZ_CP010443.1 Protein Homology CDS 3173031 3173519 . - 0 ID=cds3055;Parent=gene3130;Dbxref=Genbank:WP_000262111.1;Name=WP_000262111.1;Note=membrane protein required for colicin V production;gbkey=CDS;product=colicin V production protein;protein_id=WP_000262111.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3173778 3174440 . - . ID=gene3131;Name=SH04_RS15685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15685;old_locus_tag=SH04_15690 NZ_CP010443.1 Protein Homology CDS 3173778 3174440 . - 0 ID=cds3056;Parent=gene3131;Dbxref=Genbank:WP_000146992.1;Name=WP_000146992.1;gbkey=CDS;product=protein DedD;protein_id=WP_000146992.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3174430 3175698 . - . ID=gene3132;Name=SH04_RS15690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15690;old_locus_tag=SH04_15695 NZ_CP010443.1 Protein Homology CDS 3174430 3175698 . - 0 ID=cds3057;Parent=gene3132;Dbxref=Genbank:WP_000584546.1;Name=WP_000584546.1;gbkey=CDS;product=bifunctional protein FolC;protein_id=WP_000584546.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3175768 3176682 . - . ID=gene3133;Name=SH04_RS15695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15695;old_locus_tag=SH04_15700 NZ_CP010443.1 Protein Homology CDS 3175768 3176682 . - 0 ID=cds3058;Parent=gene3133;Dbxref=Genbank:WP_000118404.1;Name=WP_000118404.1;Note=catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer of AccA2D2 subunits;gbkey=CDS;product=acetyl-CoA carboxylase carboxyltransferase subunit beta;protein_id=WP_000118404.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3176838 3177497 . - . ID=gene3134;Name=SH04_RS15700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15700;old_locus_tag=SH04_15705 NZ_CP010443.1 Protein Homology CDS 3176838 3177497 . - 0 ID=cds3059;Parent=gene3134;Dbxref=Genbank:WP_000364335.1;Name=WP_000364335.1;gbkey=CDS;product=protein DedA;protein_id=WP_000364335.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3177580 3178392 . - . ID=gene3135;Name=truA;gbkey=Gene;gene=truA;gene_biotype=protein_coding;gene_synonym=hisT;locus_tag=SH04_RS15705;old_locus_tag=SH04_15710 NZ_CP010443.1 Protein Homology CDS 3177580 3178392 . - 0 ID=cds3060;Parent=gene3135;Dbxref=Genbank:WP_001283586.1;Name=WP_001283586.1;Note=mediates pseudouridylation (positions 38%2C 39%2C 40) at the tRNA anticodon region which contributes to the structural stability;gbkey=CDS;gene=truA;product=tRNA pseudouridine synthase A;protein_id=WP_001283586.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3178392 3179405 . - . ID=gene3136;Name=SH04_RS15710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15710;old_locus_tag=SH04_15715 NZ_CP010443.1 Protein Homology CDS 3178392 3179405 . - 0 ID=cds3061;Parent=gene3136;Dbxref=Genbank:WP_001289167.1;Name=WP_001289167.1;gbkey=CDS;product=USG-1 protein;protein_id=WP_001289167.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3179471 3180607 . - . ID=gene3137;Name=SH04_RS15715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15715;old_locus_tag=SH04_15720 NZ_CP010443.1 Protein Homology CDS 3179471 3180607 . - 0 ID=cds3062;Parent=gene3137;Dbxref=Genbank:WP_000699148.1;Name=WP_000699148.1;Note=catalyzes the formation of 3-hydroxy-2-oxo-4-phosphonooxybutanoate from erythronate-4-phosphate;gbkey=CDS;product=erythronate-4-phosphate dehydrogenase;protein_id=WP_000699148.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3180706 3181701 . + . ID=gene3138;Name=flk;gbkey=Gene;gene=flk;gene_biotype=protein_coding;gene_synonym=div;locus_tag=SH04_RS15720;old_locus_tag=SH04_15725 NZ_CP010443.1 Protein Homology CDS 3180706 3181701 . + 0 ID=cds3063;Parent=gene3138;Dbxref=Genbank:WP_000615834.1;Name=WP_000615834.1;Note=in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system%3B lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm%3B inner membrane-anchored protein;gbkey=CDS;gene=flk;product=flagellar regulator flk;protein_id=WP_000615834.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3181698 3182876 . - . ID=gene3139;Name=SH04_RS15725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15725;old_locus_tag=SH04_15730 NZ_CP010443.1 Protein Homology CDS 3181698 3182876 . - 0 ID=cds3064;Parent=gene3139;Dbxref=Genbank:WP_000127781.1;Name=WP_000127781.1;gbkey=CDS;product=arabinose efflux transporter;protein_id=WP_000127781.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3183141 3184361 . - . ID=gene3140;Name=SH04_RS15730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15730;old_locus_tag=SH04_15735 NZ_CP010443.1 Protein Homology CDS 3183141 3184361 . - 0 ID=cds3065;Parent=gene3140;Dbxref=Genbank:WP_000817178.1;Name=WP_000817178.1;Note=FabB%2C beta-Ketoacyl-ACP synthase I%2C KASI%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP;gbkey=CDS;product=3-oxoacyl-ACP synthase I;protein_id=WP_000817178.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3184520 3186526 . + . ID=gene3141;Name=mnmC;gbkey=Gene;gene=mnmC;gene_biotype=protein_coding;gene_synonym=trmC,yfcK;locus_tag=SH04_RS15735;old_locus_tag=SH04_15740 NZ_CP010443.1 Protein Homology CDS 3184520 3186526 . + 0 ID=cds3066;Parent=gene3141;Dbxref=Genbank:WP_038432625.1;Name=WP_038432625.1;Note=5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase/FAD-dependent demodification enzyme;gbkey=CDS;gene=mnmC;product=tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC;protein_id=WP_038432625.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3186647 3186925 . - . ID=gene3142;Name=SH04_RS15740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15740;old_locus_tag=SH04_15745 NZ_CP010443.1 Protein Homology CDS 3186647 3186925 . - 0 ID=cds3067;Parent=gene3142;Dbxref=Genbank:WP_000559764.1;Name=WP_000559764.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000559764.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3186959 3187507 . - . ID=gene3143;Name=SH04_RS15745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15745;old_locus_tag=SH04_15750 NZ_CP010443.1 Protein Homology CDS 3186959 3187507 . - 0 ID=cds3068;Parent=gene3143;Dbxref=Genbank:WP_001089222.1;Name=WP_001089222.1;gbkey=CDS;product=elongation factor P hydroxylase;protein_id=WP_001089222.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3187507 3188316 . - . ID=gene3144;Name=SH04_RS15750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15750;old_locus_tag=SH04_15755 NZ_CP010443.1 Protein Homology CDS 3187507 3188316 . - 0 ID=cds3069;Parent=gene3144;Dbxref=Genbank:WP_000447361.1;Name=WP_000447361.1;gbkey=CDS;product=membrane protein;protein_id=WP_000447361.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3188316 3189140 . - . ID=gene3145;Name=mepA;gbkey=Gene;gene=mepA;gene_biotype=protein_coding;locus_tag=SH04_RS15755;old_locus_tag=SH04_15760 NZ_CP010443.1 Protein Homology CDS 3188316 3189140 . - 0 ID=cds3070;Parent=gene3145;Dbxref=Genbank:WP_001043825.1;Name=WP_001043825.1;Note=D-alanyl-D-alanine endopeptidase%3B functions in hydrolyzing cell wall peptidoglycan%3B similar to LAS metallopeptidases%3B forms a dimer in periplasm;gbkey=CDS;gene=mepA;product=penicillin-insensitive murein endopeptidase;protein_id=WP_001043825.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3189144 3190229 . - . ID=gene3146;Name=SH04_RS15760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15760;old_locus_tag=SH04_15765 NZ_CP010443.1 Protein Homology CDS 3189144 3190229 . - 0 ID=cds3071;Parent=gene3146;Dbxref=Genbank:WP_001333535.1;Name=WP_001333535.1;Note=catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis;gbkey=CDS;product=chorismate synthase;protein_id=WP_001333535.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3190264 3191196 . - . ID=gene3147;Name=SH04_RS15765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15765;old_locus_tag=SH04_15770 NZ_CP010443.1 Protein Homology CDS 3190264 3191196 . - 0 ID=cds3072;Parent=gene3147;Dbxref=Genbank:WP_001300582.1;Name=WP_001300582.1;Note=involved in methylation of ribosomal protein L3;gbkey=CDS;product=50S ribosomal protein L3 glutamine methyltransferase;protein_id=WP_001300582.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3191362 3191913 . + . ID=gene3148;Name=SH04_RS15770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15770;old_locus_tag=SH04_15775 NZ_CP010443.1 Protein Homology CDS 3191362 3191913 . + 0 ID=cds3073;Parent=gene3148;Dbxref=Genbank:WP_038432628.1;Name=WP_038432628.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_038432628.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3191984 3192805 . - . ID=gene3149;Name=SH04_RS15775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15775;old_locus_tag=SH04_15780 NZ_CP010443.1 Protein Homology CDS 3191984 3192805 . - 0 ID=cds3074;Parent=gene3149;Dbxref=Genbank:WP_000698745.1;Name=WP_000698745.1;gbkey=CDS;product=DUF2544 domain-containing protein;protein_id=WP_000698745.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3192807 3193346 . - . ID=gene3150;Name=SH04_RS15780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15780;old_locus_tag=SH04_15785 NZ_CP010443.1 Protein Homology CDS 3192807 3193346 . - 0 ID=cds3075;Parent=gene3150;Dbxref=Genbank:WP_001043398.1;Name=WP_001043398.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_001043398.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3193343 3193831 . - . ID=gene3151;Name=SH04_RS15785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15785;old_locus_tag=SH04_15790 NZ_CP010443.1 Protein Homology CDS 3193343 3193831 . - 0 ID=cds3076;Parent=gene3151;Dbxref=Genbank:WP_001232541.1;Name=WP_001232541.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_001232541.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3193828 3194325 . - . ID=gene3152;Name=SH04_RS15790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15790;old_locus_tag=SH04_15795 NZ_CP010443.1 Protein Homology CDS 3193828 3194325 . - 0 ID=cds3077;Parent=gene3152;Dbxref=Genbank:WP_000078516.1;Name=WP_000078516.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000078516.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3194340 3195092 . - . ID=gene3153;Name=SH04_RS15795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15795;old_locus_tag=SH04_15800 NZ_CP010443.1 Protein Homology CDS 3194340 3195092 . - 0 ID=cds3078;Parent=gene3153;Dbxref=Genbank:WP_001281606.1;Name=WP_001281606.1;gbkey=CDS;product=fimbrial chaperone;protein_id=WP_001281606.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3195112 3197757 . - . ID=gene3154;Name=SH04_RS15800;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS15800;pseudo=true NZ_CP010443.1 Protein Homology CDS 3195112 3197757 . - 0 ID=cds3079;Parent=gene3154;gbkey=CDS;product=fimbrial assembly protein;pseudo=true;transl_except=(pos:complement(3196021..3196023)%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 3197839 3198402 . - . ID=gene3155;Name=SH04_RS15805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15805;old_locus_tag=SH04_15810 NZ_CP010443.1 Protein Homology CDS 3197839 3198402 . - 0 ID=cds3080;Parent=gene3155;Dbxref=Genbank:WP_000033316.1;Name=WP_000033316.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_000033316.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3199083 3199568 . - . ID=gene3156;Name=SH04_RS15810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15810;old_locus_tag=SH04_15815 NZ_CP010443.1 Protein Homology CDS 3199083 3199568 . - 0 ID=cds3081;Parent=gene3156;Dbxref=Genbank:WP_001195819.1;Name=WP_001195819.1;gbkey=CDS;product=phosphohistidine phosphatase;protein_id=WP_001195819.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3199771 3201915 . - . ID=gene3157;Name=fadJ;gbkey=Gene;gene=fadJ;gene_biotype=protein_coding;locus_tag=SH04_RS15815;old_locus_tag=SH04_15820 NZ_CP010443.1 Protein Homology CDS 3199771 3201915 . - 0 ID=cds3082;Parent=gene3157;Dbxref=Genbank:WP_000426176.1;Name=WP_000426176.1;Note=multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase%3B catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA%3B exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI%3B similar to FadA2B2 complex%3B involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate;gbkey=CDS;gene=fadJ;product=fatty acid oxidation complex subunit alpha;protein_id=WP_000426176.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3201915 3203225 . - . ID=gene3158;Name=fadI;gbkey=Gene;gene=fadI;gene_biotype=protein_coding;locus_tag=SH04_RS15820;old_locus_tag=SH04_15825 NZ_CP010443.1 Protein Homology CDS 3201915 3203225 . - 0 ID=cds3083;Parent=gene3158;Dbxref=Genbank:WP_000531952.1;Name=WP_000531952.1;Note=FadI%3B fatty acid oxidation complex component beta%3B functions in a heterotetramer with FadJ%3B similar to FadA2B2 complex%3B functions in beta-oxidation of fatty acids during anaerobic growth;gbkey=CDS;gene=fadI;product=3-ketoacyl-CoA thiolase;protein_id=WP_000531952.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3203406 3203690 . - . ID=gene3159;Name=SH04_RS15825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15825;old_locus_tag=SH04_15830 NZ_CP010443.1 Protein Homology CDS 3203406 3203690 . - 0 ID=cds3084;Parent=gene3159;Dbxref=Genbank:WP_001296261.1;Name=WP_001296261.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296261.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3204062 3205402 . + . ID=gene3160;Name=SH04_RS15830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15830;old_locus_tag=SH04_15835 NZ_CP010443.1 Protein Homology CDS 3204062 3205402 . + 0 ID=cds3085;Parent=gene3160;Dbxref=Genbank:WP_001295701.1;Name=WP_001295701.1;gbkey=CDS;product=long-chain fatty acid transporter;protein_id=WP_001295701.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3205768 3206826 . + . ID=gene3161;Name=SH04_RS15835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15835;old_locus_tag=SH04_15840 NZ_CP010443.1 Protein Homology CDS 3205768 3206826 . + 0 ID=cds3086;Parent=gene3161;Dbxref=Genbank:WP_000937788.1;Name=WP_000937788.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000937788.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3207008 3207763 . - . ID=gene3162;Name=SH04_RS15840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15840;old_locus_tag=SH04_15845 NZ_CP010443.1 Protein Homology CDS 3207008 3207763 . - 0 ID=cds3087;Parent=gene3162;Dbxref=Genbank:WP_000776765.1;Name=WP_000776765.1;Note=involved in maintaining OM lipid asymmetry;gbkey=CDS;product=phospholipid-binding lipoprotein;protein_id=WP_000776765.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3208057 3208989 . + . ID=gene3163;Name=SH04_RS15845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15845;old_locus_tag=SH04_15850 NZ_CP010443.1 Protein Homology CDS 3208057 3208989 . + 0 ID=cds3088;Parent=gene3163;Dbxref=Genbank:WP_000368140.1;Name=WP_000368140.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000368140.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3209065 3209139 . + . ID=gene3164;Name=SH04_RS15850;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS15850;old_locus_tag=SH04_15855 NZ_CP010443.1 tRNAscan-SE tRNA 3209065 3209139 . + . ID=rna75;Parent=gene3164;anticodon=(pos:3209098..3209100);gbkey=tRNA;product=tRNA-Arg NZ_CP010443.1 tRNAscan-SE exon 3209065 3209139 . + . ID=id168;Parent=rna75;anticodon=(pos:3209098..3209100);gbkey=tRNA;product=tRNA-Arg NZ_CP010443.1 RefSeq gene 3209301 3210458 . + . ID=gene3165;Name=SH04_RS15855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15855;old_locus_tag=SH04_15860 NZ_CP010443.1 Protein Homology CDS 3209301 3210458 . + 0 ID=cds3089;Parent=gene3165;Dbxref=Genbank:WP_000958671.1;Name=WP_000958671.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000958671.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3210611 3210973 . + . ID=gene3166;Name=SH04_RS15860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15860;old_locus_tag=SH04_15865 NZ_CP010443.1 Protein Homology CDS 3210611 3210973 . + 0 ID=cds3090;Parent=gene3166;Dbxref=Genbank:WP_000915541.1;Name=WP_000915541.1;gbkey=CDS;product=glucose translocase;protein_id=WP_000915541.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3210970 3211890 . + . ID=gene3167;Name=SH04_RS15865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15865;old_locus_tag=SH04_15870 NZ_CP010443.1 Protein Homology CDS 3210970 3211890 . + 0 ID=cds3091;Parent=gene3167;Dbxref=Genbank:WP_000703651.1;Name=WP_000703651.1;gbkey=CDS;product=bactoprenol glucosyl transferase;protein_id=WP_000703651.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3211887 3213218 . + . ID=gene3168;Name=SH04_RS15870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15870;old_locus_tag=SH04_15875 NZ_CP010443.1 Protein Homology CDS 3211887 3213218 . + 0 ID=cds3092;Parent=gene3168;Dbxref=Genbank:WP_001030215.1;Name=WP_001030215.1;gbkey=CDS;product=serotype-specific glucosyl transferase CPS-53 (KpLE1) prophage;protein_id=WP_001030215.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3213517 3213861 . + . ID=gene3169;Name=SH04_RS15875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15875;old_locus_tag=SH04_15880 NZ_CP010443.1 Protein Homology CDS 3213517 3213861 . + 0 ID=cds3093;Parent=gene3169;Dbxref=Genbank:WP_014639037.1;Name=WP_014639037.1;gbkey=CDS;product=tail assembly protein;protein_id=WP_014639037.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3213833 3214273 . - . ID=gene3170;Name=SH04_RS15880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15880;old_locus_tag=SH04_15885 NZ_CP010443.1 Protein Homology CDS 3213833 3214273 . - 0 ID=cds3094;Parent=gene3170;Dbxref=Genbank:WP_001106835.1;Name=WP_001106835.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001106835.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3214300 3214935 . - . ID=gene3171;Name=SH04_RS15885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15885;old_locus_tag=SH04_15890 NZ_CP010443.1 Protein Homology CDS 3214300 3214935 . - 0 ID=cds3095;Parent=gene3171;Dbxref=Genbank:WP_042405267.1;Name=WP_042405267.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_042405267.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3214868 3215143 . - . ID=gene3172;Name=SH04_RS15890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15890;old_locus_tag=SH04_15895 NZ_CP010443.1 Protein Homology CDS 3214868 3215143 . - 0 ID=cds3096;Parent=gene3172;Dbxref=Genbank:WP_000066913.1;Name=WP_000066913.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000066913.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3215143 3215631 . - . ID=gene3173;Name=SH04_RS15895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15895;old_locus_tag=SH04_15900 NZ_CP010443.1 Protein Homology CDS 3215143 3215631 . - 0 ID=cds3097;Parent=gene3173;Dbxref=Genbank:WP_000054968.1;Name=WP_000054968.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000054968.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3215634 3216390 . - . ID=gene3174;Name=SH04_RS22870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS22870;pseudo=true NZ_CP010443.1 Protein Homology CDS 3215634 3216390 . - 0 ID=cds3098;Parent=gene3174;exception=annotated by transcript or proteomic data;gbkey=CDS;product=replication protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 3216361 3216723 . + . ID=gene3175;Name=SH04_RS15910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15910;old_locus_tag=SH04_15915 NZ_CP010443.1 Protein Homology CDS 3216361 3216723 . + 0 ID=cds3099;Parent=gene3175;Dbxref=Genbank:WP_000135673.1;Name=WP_000135673.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000135673.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3216789 3217613 . + . ID=gene3176;Name=SH04_RS15915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15915;old_locus_tag=SH04_15920 NZ_CP010443.1 Protein Homology CDS 3216789 3217613 . + 0 ID=cds3100;Parent=gene3176;Dbxref=Genbank:WP_000081278.1;Name=WP_000081278.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000081278.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3217741 3218277 . + . ID=gene3177;Name=SH04_RS15920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15920;old_locus_tag=SH04_15925 NZ_CP010443.1 Protein Homology CDS 3217741 3218277 . + 0 ID=cds3101;Parent=gene3177;Dbxref=Genbank:WP_000008183.1;Name=WP_000008183.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000008183.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3218268 3218630 . + . ID=gene3178;Name=SH04_RS15925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15925;old_locus_tag=SH04_15930 NZ_CP010443.1 Protein Homology CDS 3218268 3218630 . + 0 ID=cds3102;Parent=gene3178;Dbxref=Genbank:WP_001242717.1;Name=WP_001242717.1;gbkey=CDS;product=phage protein;protein_id=WP_001242717.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3218630 3218935 . + . ID=gene3179;Name=SH04_RS15930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15930;old_locus_tag=SH04_15935 NZ_CP010443.1 Protein Homology CDS 3218630 3218935 . + 0 ID=cds3103;Parent=gene3179;Dbxref=Genbank:WP_000206809.1;Name=WP_000206809.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000206809.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3219067 3219267 . + . ID=gene3180;Name=SH04_RS15935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15935;old_locus_tag=SH04_15940 NZ_CP010443.1 Protein Homology CDS 3219067 3219267 . + 0 ID=cds3104;Parent=gene3180;Dbxref=Genbank:WP_001163428.1;Name=WP_001163428.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001163428.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3219451 3220386 . - . ID=gene3181;Name=SH04_RS15940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15940;old_locus_tag=SH04_15945 NZ_CP010443.1 Protein Homology CDS 3219451 3220386 . - 0 ID=cds3105;Parent=gene3181;Dbxref=Genbank:WP_001326971.1;Name=WP_001326971.1;Note=regulates the synthesis and expression of the dsdXA operon and dadA gene;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001326971.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3220604 3221941 . + . ID=gene3182;Name=SH04_RS15945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15945;old_locus_tag=SH04_15950 NZ_CP010443.1 Protein Homology CDS 3220604 3221941 . + 0 ID=cds3106;Parent=gene3182;Dbxref=Genbank:WP_000556048.1;Name=WP_000556048.1;gbkey=CDS;product=dsdX permease;protein_id=WP_000556048.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3221959 3223287 . + . ID=gene3183;Name=SH04_RS15950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15950;old_locus_tag=SH04_15955 NZ_CP010443.1 Protein Homology CDS 3221959 3223287 . + 0 ID=cds3107;Parent=gene3183;Dbxref=Genbank:WP_000426427.1;Name=WP_000426427.1;Note=catalyzes the formation of pyruvate from serine;gbkey=CDS;product=d-serine dehydratase;protein_id=WP_000426427.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3223395 3224933 . - . ID=gene3184;Name=emrB;gbkey=Gene;gene=emrB;gene_biotype=protein_coding;locus_tag=SH04_RS15955;old_locus_tag=SH04_15960 NZ_CP010443.1 Protein Homology CDS 3223395 3224933 . - 0 ID=cds3108;Parent=gene3184;Dbxref=Genbank:WP_001018714.1;Name=WP_001018714.1;Note=multidrug MFS transporte%3B with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid;gbkey=CDS;gene=emrB;product=multidrug resistance protein EmrY;protein_id=WP_001018714.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3224933 3226096 . - . ID=gene3185;Name=SH04_RS15960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15960;old_locus_tag=SH04_15965 NZ_CP010443.1 Protein Homology CDS 3224933 3226096 . - 0 ID=cds3109;Parent=gene3185;Dbxref=Genbank:WP_000435167.1;Name=WP_000435167.1;Note=with ErmA and TolC forms a multidrug efflux system;gbkey=CDS;product=multidrug resistance protein EmrK;protein_id=WP_000435167.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3226512 3227126 . + . ID=gene3186;Name=SH04_RS15965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15965;old_locus_tag=SH04_15970 NZ_CP010443.1 Protein Homology CDS 3226512 3227126 . + 0 ID=cds3110;Parent=gene3186;Dbxref=Genbank:WP_000991370.1;Name=WP_000991370.1;Note=response regulator in two-component regulatory system with EvgS%3B phosphorylated EvgA activates ompC%2C emrKY%2C gadABC%2C hdeAB and others genes%3B involved in acid resistance%2C osmotic adaption%2C and drug resistance;gbkey=CDS;product=positive transcription regulator EvgA;protein_id=WP_000991370.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3227341 3230724 . + . ID=gene3187;Name=SH04_RS15970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15970;old_locus_tag=SH04_15975 NZ_CP010443.1 Protein Homology CDS 3227341 3230724 . + 0 ID=cds3111;Parent=gene3187;Dbxref=Genbank:WP_001311012.1;Name=WP_001311012.1;gbkey=CDS;product=sensor histidine kinase;protein_id=WP_001311012.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3230780 3231925 . - . ID=gene3188;Name=SH04_RS15975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15975;old_locus_tag=SH04_15980 NZ_CP010443.1 Protein Homology CDS 3230780 3231925 . - 0 ID=cds3112;Parent=gene3188;Dbxref=Genbank:WP_001296867.1;Name=WP_001296867.1;gbkey=CDS;product=acetyl-CoA--oxalate CoA-transferase;protein_id=WP_001296867.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3231999 3232943 . - . ID=gene3189;Name=SH04_RS15980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15980;old_locus_tag=SH04_15985 NZ_CP010443.1 Protein Homology CDS 3231999 3232943 . - 0 ID=cds3113;Parent=gene3189;Dbxref=Genbank:WP_000955028.1;Name=WP_000955028.1;Note=member of the AEC family of auxin efflux transporters%3B unknown function;gbkey=CDS;product=transporter;protein_id=WP_000955028.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3233013 3234707 . - . ID=gene3190;Name=SH04_RS15985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15985;old_locus_tag=SH04_15990 NZ_CP010443.1 Protein Homology CDS 3233013 3234707 . - 0 ID=cds3114;Parent=gene3190;Dbxref=Genbank:WP_001283490.1;Name=WP_001283490.1;Note=catalyzes the formation of formyl-CoA from oxalyl-CoA;gbkey=CDS;product=oxalyl-CoA decarboxylase;protein_id=WP_001283490.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3234761 3236011 . - . ID=gene3191;Name=SH04_RS15990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15990;old_locus_tag=SH04_15995 NZ_CP010443.1 Protein Homology CDS 3234761 3236011 . - 0 ID=cds3115;Parent=gene3191;Dbxref=Genbank:WP_000106759.1;Name=WP_000106759.1;Note=catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA;gbkey=CDS;product=formyl-CoA--oxalate CoA-transferase;protein_id=WP_000106759.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3236524 3237159 . - . ID=gene3192;Name=SH04_RS15995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS15995;old_locus_tag=SH04_16000 NZ_CP010443.1 Protein Homology CDS 3236524 3237159 . - 0 ID=cds3116;Parent=gene3192;Dbxref=Genbank:WP_000825600.1;Name=WP_000825600.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000825600.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3237455 3237730 . + . ID=gene3193;Name=SH04_RS16000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16000;old_locus_tag=SH04_16005 NZ_CP010443.1 Protein Homology CDS 3237455 3237730 . + 0 ID=cds3117;Parent=gene3193;Dbxref=Genbank:WP_000867631.1;Name=WP_000867631.1;gbkey=CDS;product=lipoprotein involved in colanic acid biosynthesis;protein_id=WP_000867631.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3237715 3237852 . - . ID=gene3194;Name=SH04_RS16005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16005;old_locus_tag=SH04_16010 NZ_CP010443.1 Protein Homology CDS 3237715 3237852 . - 0 ID=cds3118;Parent=gene3194;Dbxref=Genbank:WP_032083119.1;Name=WP_032083119.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032083119.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3237807 3238049 . - . ID=gene3195;Name=SH04_RS16010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16010;old_locus_tag=SH04_16015 NZ_CP010443.1 Protein Homology CDS 3237807 3238049 . - 0 ID=cds3119;Parent=gene3195;Dbxref=Genbank:WP_000609275.1;Name=WP_000609275.1;gbkey=CDS;product=DUF2545 domain-containing protein;protein_id=WP_000609275.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3238402 3239322 . + . ID=gene3196;Name=SH04_RS16015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16015;old_locus_tag=SH04_16020 NZ_CP010443.1 Protein Homology CDS 3238402 3239322 . + 0 ID=cds3120;Parent=gene3196;Dbxref=Genbank:WP_000484404.1;Name=WP_000484404.1;Note=Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock;gbkey=CDS;product=lipid A biosynthesis palmitoleoyltransferase;protein_id=WP_000484404.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3239814 3241052 . - . ID=gene3197;Name=SH04_RS16020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16020;old_locus_tag=SH04_16025 NZ_CP010443.1 Protein Homology CDS 3239814 3241052 . - 0 ID=cds3121;Parent=gene3197;Dbxref=Genbank:WP_000785931.1;Name=WP_000785931.1;gbkey=CDS;product=glutamate--pyruvate aminotransferase AlaC;protein_id=WP_000785931.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3241428 3243125 . + . ID=gene3198;Name=SH04_RS16025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16025;old_locus_tag=SH04_16030 NZ_CP010443.1 Protein Homology CDS 3241428 3243125 . + 0 ID=cds3122;Parent=gene3198;Dbxref=Genbank:WP_000544359.1;Name=WP_000544359.1;gbkey=CDS;product=sensor histidine kinase;protein_id=WP_000544359.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3243140 3243874 . + . ID=gene3199;Name=SH04_RS16030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16030;old_locus_tag=SH04_16035 NZ_CP010443.1 Protein Homology CDS 3243140 3243874 . + 0 ID=cds3123;Parent=gene3199;Dbxref=Genbank:WP_001295458.1;Name=WP_001295458.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001295458.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3243887 3244744 . + . ID=gene3200;Name=SH04_RS16035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16035;old_locus_tag=SH04_16040 NZ_CP010443.1 Protein Homology CDS 3243887 3244744 . + 0 ID=cds3124;Parent=gene3200;Dbxref=Genbank:WP_000646835.1;Name=WP_000646835.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_000646835.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3244747 3247242 . - . ID=gene3201;Name=SH04_RS16040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16040;old_locus_tag=SH04_16045 NZ_CP010443.1 Protein Homology CDS 3244747 3247242 . - 0 ID=cds3125;Parent=gene3201;Dbxref=Genbank:WP_000955906.1;Name=WP_000955906.1;gbkey=CDS;product=multiphosphoryl transfer protein 1;protein_id=WP_000955906.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3247267 3248304 . - . ID=gene3202;Name=SH04_RS16045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16045;old_locus_tag=SH04_16050 NZ_CP010443.1 Protein Homology CDS 3247267 3248304 . - 0 ID=cds3126;Parent=gene3202;Dbxref=Genbank:WP_000366028.1;Name=WP_000366028.1;Note=metalloprotein;gbkey=CDS;product=aminopeptidase YpdE;protein_id=WP_000366028.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3248304 3249389 . - . ID=gene3203;Name=SH04_RS16050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16050;old_locus_tag=SH04_16055 NZ_CP010443.1 Protein Homology CDS 3248304 3249389 . - 0 ID=cds3127;Parent=gene3203;Dbxref=Genbank:WP_000173288.1;Name=WP_000173288.1;Note=Xaa-Pro aminopeptidase%3B limited methionine aminopeptidase;gbkey=CDS;product=aminopeptidase YpdF;protein_id=WP_000173288.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3249404 3250651 . - . ID=gene3204;Name=SH04_RS16055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16055;old_locus_tag=SH04_16060 NZ_CP010443.1 Protein Homology CDS 3249404 3250651 . - 0 ID=cds3128;Parent=gene3204;Dbxref=Genbank:WP_000985359.1;Name=WP_000985359.1;gbkey=CDS;product=Fructose-like permease IIC component 1;protein_id=WP_000985359.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3250673 3250999 . - . ID=gene3205;Name=SH04_RS16060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16060;old_locus_tag=SH04_16065 NZ_CP010443.1 Protein Homology CDS 3250673 3250999 . - 0 ID=cds3129;Parent=gene3205;Dbxref=Genbank:WP_000038456.1;Name=WP_000038456.1;gbkey=CDS;product=fructose-like phosphotransferase enzyme IIB component 1;protein_id=WP_000038456.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3251218 3252183 . - . ID=gene3206;Name=glk;gbkey=Gene;gene=glk;gene_biotype=protein_coding;locus_tag=SH04_RS16065;old_locus_tag=SH04_16070 NZ_CP010443.1 Protein Homology CDS 3251218 3252183 . - 0 ID=cds3130;Parent=gene3206;Dbxref=Genbank:WP_000170346.1;Name=WP_000170346.1;Note=catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate;gbkey=CDS;gene=glk;product=glucokinase;protein_id=WP_000170346.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3252387 3253643 . + . ID=gene3207;Name=SH04_RS16070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16070;old_locus_tag=SH04_16075 NZ_CP010443.1 Protein Homology CDS 3252387 3253643 . + 0 ID=cds3131;Parent=gene3207;Dbxref=Genbank:WP_000903146.1;Name=WP_000903146.1;gbkey=CDS;product=ion channel protein;protein_id=WP_000903146.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3253758 3254084 . + . ID=gene3208;Name=SH04_RS16075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16075;old_locus_tag=SH04_16080 NZ_CP010443.1 Protein Homology CDS 3253758 3254084 . + 0 ID=cds3132;Parent=gene3208;Dbxref=Genbank:WP_000490072.1;Name=WP_000490072.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000490072.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3254005 3254166 . + . ID=gene3209;Name=SH04_RS16080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16080 NZ_CP010443.1 Protein Homology CDS 3254005 3254166 . + 0 ID=cds3133;Parent=gene3209;Dbxref=Genbank:WP_042004693.1;Name=WP_042004693.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_042004693.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3254225 3255463 . - . ID=gene3210;Name=SH04_RS16085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16085;old_locus_tag=SH04_16090 NZ_CP010443.1 Protein Homology CDS 3254225 3255463 . - 0 ID=cds3134;Parent=gene3210;Dbxref=Genbank:WP_000186369.1;Name=WP_000186369.1;gbkey=CDS;product=divalent metal cation transporter MntH;protein_id=WP_000186369.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3255799 3257001 . + . ID=gene3211;Name=SH04_RS16090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16090;old_locus_tag=SH04_16095 NZ_CP010443.1 Protein Homology CDS 3255799 3257001 . + 0 ID=cds3135;Parent=gene3211;Dbxref=Genbank:WP_000376337.1;Name=WP_000376337.1;gbkey=CDS;product=nucleoside permease NupC;protein_id=WP_000376337.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 3257030 3258375 . + . ID=id169;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3257088 3258200 . + . ID=gene3212;Name=SH04_RS16095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16095;old_locus_tag=SH04_16100 NZ_CP010443.1 Protein Homology CDS 3257088 3258200 . + 0 ID=cds3136;Parent=gene3212;Dbxref=Genbank:WP_001300563.1;Name=WP_001300563.1;gbkey=CDS;product=transposase;protein_id=WP_001300563.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3258400 3260589 . - . ID=gene3213;Name=SH04_RS16100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16100;old_locus_tag=SH04_16105 NZ_CP010443.1 Protein Homology CDS 3258400 3260589 . - 0 ID=cds3137;Parent=gene3213;Dbxref=Genbank:WP_000497400.1;Name=WP_000497400.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_000497400.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3260798 3260873 . - . ID=gene3214;Name=SH04_RS16105;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS16105;old_locus_tag=SH04_16110 NZ_CP010443.1 tRNAscan-SE tRNA 3260798 3260873 . - . ID=rna76;Parent=gene3214;anticodon=(pos:complement(3260838..3260840));gbkey=tRNA;product=tRNA-Ala NZ_CP010443.1 tRNAscan-SE exon 3260798 3260873 . - . ID=id170;Parent=rna76;anticodon=(pos:complement(3260838..3260840));gbkey=tRNA;product=tRNA-Ala NZ_CP010443.1 RefSeq gene 3260913 3260988 . - . ID=gene3215;Name=SH04_RS16110;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS16110;old_locus_tag=SH04_16115 NZ_CP010443.1 tRNAscan-SE tRNA 3260913 3260988 . - . ID=rna77;Parent=gene3215;anticodon=(pos:complement(3260953..3260955));gbkey=tRNA;product=tRNA-Ala NZ_CP010443.1 tRNAscan-SE exon 3260913 3260988 . - . ID=id171;Parent=rna77;anticodon=(pos:complement(3260953..3260955));gbkey=tRNA;product=tRNA-Ala NZ_CP010443.1 RefSeq gene 3261224 3261568 . + . ID=gene3216;Name=SH04_RS16115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16115;old_locus_tag=SH04_16120 NZ_CP010443.1 Protein Homology CDS 3261224 3261568 . + 0 ID=cds3138;Parent=gene3216;Dbxref=Genbank:WP_001296278.1;Name=WP_001296278.1;gbkey=CDS;product=DUF1323 family DNA-binding protein;protein_id=WP_001296278.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3261570 3261962 . + . ID=gene3217;Name=SH04_RS16120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16120;old_locus_tag=SH04_16125 NZ_CP010443.1 Protein Homology CDS 3261570 3261962 . + 0 ID=cds3139;Parent=gene3217;Dbxref=Genbank:WP_000826503.1;Name=WP_000826503.1;gbkey=CDS;product=DUF1323 family DNA-binding protein;protein_id=WP_000826503.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3262014 3263429 . - . ID=gene3218;Name=gltX;gbkey=Gene;gene=gltX;gene_biotype=protein_coding;locus_tag=SH04_RS16125;old_locus_tag=SH04_16130 NZ_CP010443.1 Protein Homology CDS 3262014 3263429 . - 0 ID=cds3140;Parent=gene3218;Dbxref=Genbank:WP_000695655.1;Name=WP_000695655.1;Note=catalyzes a two-step reaction%2C first charging an glutamate molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B contains discriminating and non-discriminating subtypes;gbkey=CDS;gene=gltX;product=glutamate--tRNA ligase;protein_id=WP_000695655.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3263688 3263763 . + . ID=gene3219;Name=SH04_RS16130;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS16130;old_locus_tag=SH04_16135 NZ_CP010443.1 tRNAscan-SE tRNA 3263688 3263763 . + . ID=rna78;Parent=gene3219;anticodon=(pos:3263721..3263723);gbkey=tRNA;product=tRNA-Val NZ_CP010443.1 tRNAscan-SE exon 3263688 3263763 . + . ID=id172;Parent=rna78;anticodon=(pos:3263721..3263723);gbkey=tRNA;product=tRNA-Val NZ_CP010443.1 RefSeq gene 3263808 3263883 . + . ID=gene3220;Name=SH04_RS16135;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS16135;old_locus_tag=SH04_16140 NZ_CP010443.1 tRNAscan-SE tRNA 3263808 3263883 . + . ID=rna79;Parent=gene3220;anticodon=(pos:3263841..3263843);gbkey=tRNA;product=tRNA-Val NZ_CP010443.1 tRNAscan-SE exon 3263808 3263883 . + . ID=id173;Parent=rna79;anticodon=(pos:3263841..3263843);gbkey=tRNA;product=tRNA-Val NZ_CP010443.1 RefSeq repeat_region 3263930 3264277 . + . ID=id174;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3263930 3264005 . + . ID=gene3221;Name=SH04_RS16140;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS16140;old_locus_tag=SH04_16145 NZ_CP010443.1 tRNAscan-SE tRNA 3263930 3264005 . + . ID=rna80;Parent=gene3221;anticodon=(pos:3263963..3263965);gbkey=tRNA;product=tRNA-Val NZ_CP010443.1 tRNAscan-SE exon 3263930 3264005 . + . ID=id175;Parent=rna80;anticodon=(pos:3263963..3263965);gbkey=tRNA;product=tRNA-Val NZ_CP010443.1 RefSeq gene 3264010 3264085 . + . ID=gene3222;Name=SH04_RS16145;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS16145;old_locus_tag=SH04_16150 NZ_CP010443.1 tRNAscan-SE tRNA 3264010 3264085 . + . ID=rna81;Parent=gene3222;anticodon=(pos:3264043..3264045);gbkey=tRNA;product=tRNA-Lys NZ_CP010443.1 tRNAscan-SE exon 3264010 3264085 . + . ID=id176;Parent=rna81;anticodon=(pos:3264043..3264045);gbkey=tRNA;product=tRNA-Lys NZ_CP010443.1 RefSeq gene 3264350 3265234 . - . ID=gene3223;Name=SH04_RS16150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16150;old_locus_tag=SH04_16155 NZ_CP010443.1 Protein Homology CDS 3264350 3265234 . - 0 ID=cds3141;Parent=gene3223;Dbxref=Genbank:WP_000442949.1;Name=WP_000442949.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000442949.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3265275 3265433 . - . ID=gene3224;Name=SH04_RS16155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16155;old_locus_tag=SH04_16160 NZ_CP010443.1 Protein Homology CDS 3265275 3265433 . - 0 ID=cds3142;Parent=gene3224;Dbxref=Genbank:WP_000651752.1;Name=WP_000651752.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000651752.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3265486 3266742 . - . ID=gene3225;Name=SH04_RS16160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16160;old_locus_tag=SH04_16165 NZ_CP010443.1 Protein Homology CDS 3265486 3266742 . - 0 ID=cds3143;Parent=gene3225;Dbxref=Genbank:WP_000020402.1;Name=WP_000020402.1;gbkey=CDS;product=xanthosine permease;protein_id=WP_000020402.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3266802 3267635 . - . ID=gene3226;Name=SH04_RS16165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16165;old_locus_tag=SH04_16170 NZ_CP010443.1 Protein Homology CDS 3266802 3267635 . - 0 ID=cds3144;Parent=gene3226;Dbxref=Genbank:WP_000084573.1;Name=WP_000084573.1;gbkey=CDS;product=purine nucleoside phosphorylase;protein_id=WP_000084573.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3267884 3268648 . + . ID=gene3227;Name=SH04_RS16170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16170;old_locus_tag=SH04_16175 NZ_CP010443.1 Protein Homology CDS 3267884 3268648 . + 0 ID=cds3145;Parent=gene3227;Dbxref=Genbank:WP_000716421.1;Name=WP_000716421.1;gbkey=CDS;product=outer membrane protein;protein_id=WP_000716421.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3268687 3269613 . - . ID=gene3228;Name=SH04_RS16175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16175;old_locus_tag=SH04_16180 NZ_CP010443.1 Protein Homology CDS 3268687 3269613 . - 0 ID=cds3146;Parent=gene3228;Dbxref=Genbank:WP_001109794.1;Name=WP_001109794.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_001109794.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3269703 3270701 . + . ID=gene3229;Name=SH04_RS16180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16180;old_locus_tag=SH04_16185 NZ_CP010443.1 Protein Homology CDS 3269703 3270701 . + 0 ID=cds3147;Parent=gene3229;Dbxref=Genbank:WP_000765610.1;Name=WP_000765610.1;gbkey=CDS;product=inorganic ion transporter;protein_id=WP_000765610.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3270698 3270916 . - . ID=gene3230;Name=SH04_RS16185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16185;old_locus_tag=SH04_16190 NZ_CP010443.1 Protein Homology CDS 3270698 3270916 . - 0 ID=cds3148;Parent=gene3230;Dbxref=Genbank:WP_000410201.1;Name=WP_000410201.1;gbkey=CDS;product=DUF3820 domain-containing protein;protein_id=WP_000410201.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3270918 3272933 . - . ID=gene3231;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;locus_tag=SH04_RS16190;old_locus_tag=SH04_16195 NZ_CP010443.1 Protein Homology CDS 3270918 3272933 . - 0 ID=cds3149;Parent=gene3231;Dbxref=Genbank:WP_000443661.1;Name=WP_000443661.1;Note=this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction%3B essential for DNA replication and repair of damaged DNA%3B similar to ligase LigB;gbkey=CDS;gene=ligA;product=DNA ligase;protein_id=WP_000443661.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3273004 3273990 . - . ID=gene3232;Name=SH04_RS16195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16195;old_locus_tag=SH04_16200 NZ_CP010443.1 Protein Homology CDS 3273004 3273990 . - 0 ID=cds3150;Parent=gene3232;Dbxref=Genbank:WP_001300494.1;Name=WP_001300494.1;Note=interacts with cell division protein FitsZ and may be required to anchor septal ring structure;gbkey=CDS;product=FtsZ stabilizer;protein_id=WP_001300494.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3274220 3274981 . + . ID=gene3233;Name=SH04_RS16200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16200;old_locus_tag=SH04_16205 NZ_CP010443.1 Protein Homology CDS 3274220 3274981 . + 0 ID=cds3151;Parent=gene3233;Dbxref=Genbank:WP_000254839.1;Name=WP_000254839.1;gbkey=CDS;product=sulfate transporter CysZ;protein_id=WP_000254839.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3275166 3276137 . + . ID=gene3234;Name=SH04_RS16205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16205;old_locus_tag=SH04_16210 NZ_CP010443.1 Protein Homology CDS 3275166 3276137 . + 0 ID=cds3152;Parent=gene3234;Dbxref=Genbank:WP_000034402.1;Name=WP_000034402.1;gbkey=CDS;product=cysteine synthase A;protein_id=WP_000034402.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3276521 3276778 . + . ID=gene3235;Name=SH04_RS16210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16210;old_locus_tag=SH04_16215 NZ_CP010443.1 Protein Homology CDS 3276521 3276778 . + 0 ID=cds3153;Parent=gene3235;Dbxref=Genbank:WP_000487600.1;Name=WP_000487600.1;gbkey=CDS;product=phosphocarrier protein HPr;protein_id=WP_000487600.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3276823 3278550 . + . ID=gene3236;Name=SH04_RS16215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16215;old_locus_tag=SH04_16220 NZ_CP010443.1 Protein Homology CDS 3276823 3278550 . + 0 ID=cds3154;Parent=gene3236;Dbxref=Genbank:WP_000623140.1;Name=WP_000623140.1;Note=Phosphotransferase system%2C enzyme I%3B transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein%3B part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active-transport system;gbkey=CDS;product=phosphoenolpyruvate-protein phosphotransferase;protein_id=WP_000623140.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3278591 3279100 . + . ID=gene3237;Name=SH04_RS16220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16220;old_locus_tag=SH04_16225 NZ_CP010443.1 Protein Homology CDS 3278591 3279100 . + 0 ID=cds3155;Parent=gene3237;Dbxref=Genbank:WP_000522247.1;Name=WP_000522247.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=glucose-specific phosphotransferase enzyme IIA component;protein_id=WP_000522247.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3279143 3279994 . - . ID=gene3238;Name=pdxK;gbkey=Gene;gene=pdxK;gene_biotype=protein_coding;locus_tag=SH04_RS16225;old_locus_tag=SH04_16230 NZ_CP010443.1 Protein Homology CDS 3279143 3279994 . - 0 ID=cds3156;Parent=gene3238;Dbxref=Genbank:WP_000096674.1;Name=WP_000096674.1;Note=catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal;gbkey=CDS;gene=pdxK;product=pyridoxine kinase;protein_id=WP_000096674.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3280099 3280473 . + . ID=gene3239;Name=SH04_RS16230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16230;old_locus_tag=SH04_16235 NZ_CP010443.1 Protein Homology CDS 3280099 3280473 . + 0 ID=cds3157;Parent=gene3239;Dbxref=Genbank:WP_000719962.1;Name=WP_000719962.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000719962.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3280506 3281240 . + . ID=gene3240;Name=SH04_RS16235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16235;old_locus_tag=SH04_16240 NZ_CP010443.1 Protein Homology CDS 3280506 3281240 . + 0 ID=cds3158;Parent=gene3240;Dbxref=Genbank:WP_000745534.1;Name=WP_000745534.1;gbkey=CDS;product=WGR domain protein;protein_id=WP_000745534.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3281429 3282340 . - . ID=gene3241;Name=cysM;gbkey=Gene;gene=cysM;gene_biotype=protein_coding;locus_tag=SH04_RS16240;old_locus_tag=SH04_16245 NZ_CP010443.1 Protein Homology CDS 3281429 3282340 . - 0 ID=cds3159;Parent=gene3241;Dbxref=Genbank:WP_001336044.1;Name=WP_001336044.1;Note=catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide;gbkey=CDS;gene=cysM;product=cysteine synthase B;protein_id=WP_001336044.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3282474 3283571 . - . ID=gene3242;Name=SH04_RS16245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16245;old_locus_tag=SH04_16250 NZ_CP010443.1 Protein Homology CDS 3282474 3283571 . - 0 ID=cds3160;Parent=gene3242;Dbxref=Genbank:WP_000021036.1;Name=WP_000021036.1;gbkey=CDS;product=sulfate/thiosulfate import ATP-binding protein CysA;protein_id=WP_000021036.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3283561 3284436 . - . ID=gene3243;Name=cysW;gbkey=Gene;gene=cysW;gene_biotype=protein_coding;locus_tag=SH04_RS16250;old_locus_tag=SH04_16255 NZ_CP010443.1 Protein Homology CDS 3283561 3284436 . - 0 ID=cds3161;Parent=gene3243;Dbxref=Genbank:WP_000852686.1;Name=WP_000852686.1;Note=Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import;gbkey=CDS;gene=cysW;product=sulfate ABC transporter permease;protein_id=WP_000852686.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3284436 3285269 . - . ID=gene3244;Name=SH04_RS16255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16255;old_locus_tag=SH04_16260 NZ_CP010443.1 Protein Homology CDS 3284436 3285269 . - 0 ID=cds3162;Parent=gene3244;Dbxref=Genbank:WP_000458406.1;Name=WP_000458406.1;gbkey=CDS;product=sulfate ABC transporter permease;protein_id=WP_000458406.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3285269 3286285 . - . ID=gene3245;Name=SH04_RS16260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16260;old_locus_tag=SH04_16265 NZ_CP010443.1 Protein Homology CDS 3285269 3286285 . - 0 ID=cds3163;Parent=gene3245;Dbxref=Genbank:WP_000290230.1;Name=WP_000290230.1;gbkey=CDS;product=thiosulfate-binding protein;protein_id=WP_000290230.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3286589 3287380 . - . ID=gene3246;Name=SH04_RS16265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16265;old_locus_tag=SH04_16270 NZ_CP010443.1 Protein Homology CDS 3286589 3287380 . - 0 ID=cds3164;Parent=gene3246;Dbxref=Genbank:WP_000517431.1;Name=WP_000517431.1;gbkey=CDS;product=oxidoreductase UcpA;protein_id=WP_000517431.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3287509 3288366 . - . ID=gene3247;Name=SH04_RS16270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16270;old_locus_tag=SH04_16275 NZ_CP010443.1 Protein Homology CDS 3287509 3288366 . - 0 ID=cds3165;Parent=gene3247;Dbxref=Genbank:WP_000966470.1;Name=WP_000966470.1;Note=repressor for murPQ%3B N-acetylmuramic acid 6-phosphate inducible;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000966470.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3288530 3289426 . + . ID=gene3248;Name=SH04_RS16275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16275;old_locus_tag=SH04_16280 NZ_CP010443.1 Protein Homology CDS 3288530 3289426 . + 0 ID=cds3166;Parent=gene3248;Dbxref=Genbank:WP_001159160.1;Name=WP_001159160.1;Note=catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate%3B involved in MurNAc dissimilation pathway;gbkey=CDS;product=N-acetylmuramic acid 6-phosphate etherase;protein_id=WP_001159160.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3289430 3290854 . + . ID=gene3249;Name=murP;gbkey=Gene;gene=murP;gene_biotype=protein_coding;gene_synonym=yfeV;locus_tag=SH04_RS16280;old_locus_tag=SH04_16285 NZ_CP010443.1 Protein Homology CDS 3289430 3290854 . + 0 ID=cds3167;Parent=gene3249;Dbxref=Genbank:WP_001040483.1;Name=WP_001040483.1;Note=belongs to PEP-dependent PTS system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel%3B requires crr-encoded enzyme IIA-glucose component;gbkey=CDS;gene=murP;product=PTS N-acetylmuramic acid EIIBC component;protein_id=WP_001040483.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3290859 3292163 . + . ID=gene3250;Name=SH04_RS16285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16285;old_locus_tag=SH04_16290 NZ_CP010443.1 Protein Homology CDS 3290859 3292163 . + 0 ID=cds3168;Parent=gene3250;Dbxref=Genbank:WP_001327042.1;Name=WP_001327042.1;gbkey=CDS;product=penicillin-binding protein;protein_id=WP_001327042.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3292403 3293302 . - . ID=gene3251;Name=SH04_RS16290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16290;old_locus_tag=SH04_16295 NZ_CP010443.1 Protein Homology CDS 3292403 3293302 . - 0 ID=cds3169;Parent=gene3251;Dbxref=Genbank:WP_001350538.1;Name=WP_001350538.1;gbkey=CDS;product=deferrochelatase/peroxidase;protein_id=WP_001350538.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3293398 3293973 . - . ID=gene3252;Name=SH04_RS16295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16295;old_locus_tag=SH04_16300 NZ_CP010443.1 Protein Homology CDS 3293398 3293973 . - 0 ID=cds3170;Parent=gene3252;Dbxref=Genbank:WP_000838944.1;Name=WP_000838944.1;gbkey=CDS;product=RpoE-regulated lipoprotein;protein_id=WP_000838944.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3294034 3294483 . - . ID=gene3253;Name=SH04_RS16300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16300;old_locus_tag=SH04_16305 NZ_CP010443.1 Protein Homology CDS 3294034 3294483 . - 0 ID=cds3171;Parent=gene3253;Dbxref=Genbank:WP_001350539.1;Name=WP_001350539.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001350539.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3294470 3294895 . - . ID=gene3254;Name=SH04_RS16305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16305;old_locus_tag=SH04_16310 NZ_CP010443.1 Protein Homology CDS 3294470 3294895 . - 0 ID=cds3172;Parent=gene3254;Dbxref=Genbank:WP_000405996.1;Name=WP_000405996.1;gbkey=CDS;product=acetyltransferase YpeA;protein_id=WP_000405996.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3295109 3295978 . + . ID=gene3255;Name=SH04_RS16310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16310;old_locus_tag=SH04_16315 NZ_CP010443.1 Protein Homology CDS 3295109 3295978 . + 0 ID=cds3173;Parent=gene3255;Dbxref=Genbank:WP_000102886.1;Name=WP_000102886.1;gbkey=CDS;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_000102886.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3295982 3296881 . + . ID=gene3256;Name=SH04_RS16315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16315;old_locus_tag=SH04_16320 NZ_CP010443.1 Protein Homology CDS 3295982 3296881 . + 0 ID=cds3174;Parent=gene3256;Dbxref=Genbank:WP_000801365.1;Name=WP_000801365.1;Note=catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis;gbkey=CDS;product=coproporphyrinogen III oxidase;protein_id=WP_000801365.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3296887 3297939 . - . ID=gene3257;Name=SH04_RS16320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16320;old_locus_tag=SH04_16325 NZ_CP010443.1 Protein Homology CDS 3296887 3297939 . - 0 ID=cds3175;Parent=gene3257;Dbxref=Genbank:WP_000753690.1;Name=WP_000753690.1;Note=activates the transcription of the ethanolamine utilization operon;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000753690.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3297985 3298485 . - . ID=gene3258;Name=SH04_RS16325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16325;old_locus_tag=SH04_16330 NZ_CP010443.1 Protein Homology CDS 3297985 3298485 . - 0 ID=cds3176;Parent=gene3258;Dbxref=Genbank:WP_000606257.1;Name=WP_000606257.1;Note=ethanolamine utilization protein%3B involved in the degredation of ethanolamine;gbkey=CDS;product=ethanolamine utilization protein EutK;protein_id=WP_000606257.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3298498 3299157 . - . ID=gene3259;Name=SH04_RS16330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16330;old_locus_tag=SH04_16335 NZ_CP010443.1 Protein Homology CDS 3298498 3299157 . - 0 ID=cds3177;Parent=gene3259;Dbxref=Genbank:WP_001111023.1;Name=WP_001111023.1;Note=carboxysome structural protein involved in ethanolamine utilization;gbkey=CDS;product=ethanolamine utilization protein EutL;protein_id=WP_001111023.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3299167 3300054 . - . ID=gene3260;Name=SH04_RS16335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16335;old_locus_tag=SH04_16340 NZ_CP010443.1 Protein Homology CDS 3299167 3300054 . - 0 ID=cds3178;Parent=gene3260;Dbxref=Genbank:WP_000372316.1;Name=WP_000372316.1;Note=catalyzes the formation of acetaldehyde from ethanolamine;gbkey=CDS;product=ethanolamine ammonia-lyase light chain;protein_id=WP_000372316.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3300075 3301436 . - . ID=gene3261;Name=SH04_RS16340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16340;old_locus_tag=SH04_16345 NZ_CP010443.1 Protein Homology CDS 3300075 3301436 . - 0 ID=cds3179;Parent=gene3261;Dbxref=Genbank:WP_000769961.1;Name=WP_000769961.1;Note=with EutC catalyzes the formation of acetaldehyde and ammonia from ethanolamine;gbkey=CDS;product=ethanolamine ammonia-lyase heavy chain;protein_id=WP_000769961.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3301448 3302851 . - . ID=gene3262;Name=eutA;gbkey=Gene;gene=eutA;gene_biotype=protein_coding;locus_tag=SH04_RS16345;old_locus_tag=SH04_16350 NZ_CP010443.1 Protein Homology CDS 3301448 3302851 . - 0 ID=cds3180;Parent=gene3262;Dbxref=Genbank:WP_001097542.1;Name=WP_001097542.1;Note=ethanolamine utilization protein EutA;gbkey=CDS;gene=eutA;product=ethanolamine utilization protein EutA;protein_id=WP_001097542.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3302848 3304074 . - . ID=gene3263;Name=SH04_RS16350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16350;old_locus_tag=SH04_16355 NZ_CP010443.1 Protein Homology CDS 3302848 3304074 . - 0 ID=cds3181;Parent=gene3263;Dbxref=Genbank:WP_000512372.1;Name=WP_000512372.1;Note=may be involved in the transport of ethanolamine;gbkey=CDS;product=ethanolamine utilization protein EutH;protein_id=WP_000512372.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3304291 3305478 . - . ID=gene3264;Name=SH04_RS16355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16355;old_locus_tag=SH04_16360 NZ_CP010443.1 Protein Homology CDS 3304291 3305478 . - 0 ID=cds3182;Parent=gene3264;Dbxref=Genbank:WP_001326575.1;Name=WP_001326575.1;Note=aldehyde reductase%3B catalyzes the conversion of acetaldehyde to ethanol;gbkey=CDS;product=ethanolamine utilization protein EutG;protein_id=WP_001326575.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3305468 3306304 . - . ID=gene3265;Name=SH04_RS16360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16360;old_locus_tag=SH04_16365 NZ_CP010443.1 Protein Homology CDS 3305468 3306304 . - 0 ID=cds3183;Parent=gene3265;Dbxref=Genbank:WP_000929729.1;Name=WP_000929729.1;Note=possible chaperonin%3B may be involved in the assembly of the carboxysome;gbkey=CDS;product=ethanolamine utilization protein EutJ;protein_id=WP_000929729.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3306315 3307718 . - . ID=gene3266;Name=SH04_RS16365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16365;old_locus_tag=SH04_16370 NZ_CP010443.1 Protein Homology CDS 3306315 3307718 . - 0 ID=cds3184;Parent=gene3266;Dbxref=Genbank:WP_001075716.1;Name=WP_001075716.1;Note=ethanolamine utilization protein%3B catalyzes the formation of acetyl-CoA from acetaldehyde;gbkey=CDS;product=ethanolamine utilization protein EutE;protein_id=WP_001075716.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3307730 3308017 . - . ID=gene3267;Name=SH04_RS16370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16370;old_locus_tag=SH04_16375 NZ_CP010443.1 Protein Homology CDS 3307730 3308017 . - 0 ID=cds3185;Parent=gene3267;Dbxref=Genbank:WP_000762196.1;Name=WP_000762196.1;gbkey=CDS;product=ethanolamine utilization protein EutN;protein_id=WP_000762196.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3308124 3308417 . - . ID=gene3268;Name=SH04_RS16375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16375;old_locus_tag=SH04_16380 NZ_CP010443.1 Protein Homology CDS 3308124 3308417 . - 0 ID=cds3186;Parent=gene3268;Dbxref=Genbank:WP_000387713.1;Name=WP_000387713.1;Note=ethanolamine utilization protein%3B involved in the degredation of ethanolamine;gbkey=CDS;product=ethanolamine utilization protein EutM;protein_id=WP_000387713.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3308456 3309472 . - . ID=gene3269;Name=SH04_RS16380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16380;old_locus_tag=SH04_16385 NZ_CP010443.1 Protein Homology CDS 3308456 3309472 . - 0 ID=cds3187;Parent=gene3269;Dbxref=Genbank:WP_000582977.1;Name=WP_000582977.1;gbkey=CDS;product=ethanolamine utilization protein EutD;protein_id=WP_000582977.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3309469 3310272 . - . ID=gene3270;Name=SH04_RS16385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16385;old_locus_tag=SH04_16390 NZ_CP010443.1 Protein Homology CDS 3309469 3310272 . - 0 ID=cds3188;Parent=gene3270;Dbxref=Genbank:WP_000651298.1;Name=WP_000651298.1;Note=catalyzes the conversion of cob(I)yrinic acid a%2Cc-diamide to adenosylcob(III)yrinic acid a%2Cc-diamide;gbkey=CDS;product=ethanolamine utilization cobalamin adenosyltransferase;protein_id=WP_000651298.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3310269 3310970 . - . ID=gene3271;Name=SH04_RS16390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16390;old_locus_tag=SH04_16395 NZ_CP010443.1 Protein Homology CDS 3310269 3310970 . - 0 ID=cds3189;Parent=gene3271;Dbxref=Genbank:WP_000733906.1;Name=WP_000733906.1;gbkey=CDS;product=ethanolamine utilization protein EutQ;protein_id=WP_000733906.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3310945 3311424 . - . ID=gene3272;Name=SH04_RS16395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16395;old_locus_tag=SH04_16400 NZ_CP010443.1 Protein Homology CDS 3310945 3311424 . - 0 ID=cds3190;Parent=gene3272;Dbxref=Genbank:WP_000820763.1;Name=WP_000820763.1;gbkey=CDS;product=ethanolamine utilization protein EutP;protein_id=WP_000820763.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3311437 3311772 . - . ID=gene3273;Name=SH04_RS16400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16400;old_locus_tag=SH04_16405 NZ_CP010443.1 Protein Homology CDS 3311437 3311772 . - 0 ID=cds3191;Parent=gene3273;Dbxref=Genbank:WP_000356956.1;Name=WP_000356956.1;Note=ethanolamine utilization protein%3B involved in the degredation of ethanolamine;gbkey=CDS;product=ethanolamine utilization protein EutS;protein_id=WP_000356956.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3312065 3314344 . - . ID=gene3274;Name=SH04_RS16405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16405;old_locus_tag=SH04_16410 NZ_CP010443.1 Protein Homology CDS 3312065 3314344 . - 0 ID=cds3192;Parent=gene3274;Dbxref=Genbank:WP_000342644.1;Name=WP_000342644.1;Note=NADP-dependent%3B catalyzes the oxidative decarboxylation of malate to form pyruvate%3B decarboxylates oxaloacetate;gbkey=CDS;product=NADP-dependent malic enzyme;protein_id=WP_000342644.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3314633 3315583 . + . ID=gene3275;Name=SH04_RS16410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16410;old_locus_tag=SH04_16415 NZ_CP010443.1 Protein Homology CDS 3314633 3315583 . + 0 ID=cds3193;Parent=gene3275;Dbxref=Genbank:WP_001003709.1;Name=WP_001003709.1;gbkey=CDS;product=transaldolase A;protein_id=WP_001003709.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3315603 3317606 . + . ID=gene3276;Name=SH04_RS16415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16415;old_locus_tag=SH04_16420 NZ_CP010443.1 Protein Homology CDS 3315603 3317606 . + 0 ID=cds3194;Parent=gene3276;Dbxref=Genbank:WP_000087280.1;Name=WP_000087280.1;Note=catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate%3B can transfer ketol groups between several groups%3B in Escherichia coli there are two tkt genes%2C tktA expressed during exponential growth and the tktB during stationary phase;gbkey=CDS;product=transketolase;protein_id=WP_000087280.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3317701 3318744 . - . ID=gene3277;Name=SH04_RS16420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16420;old_locus_tag=SH04_16425 NZ_CP010443.1 Protein Homology CDS 3317701 3318744 . - 0 ID=cds3195;Parent=gene3277;Dbxref=Genbank:WP_001270542.1;Name=WP_001270542.1;gbkey=CDS;product=DUF1176 domain-containing protein;protein_id=WP_001270542.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3318870 3319445 . - . ID=gene3278;Name=SH04_RS16425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16425;old_locus_tag=SH04_16430 NZ_CP010443.1 Protein Homology CDS 3318870 3319445 . - 0 ID=cds3196;Parent=gene3278;Dbxref=Genbank:WP_001300814.1;Name=WP_001300814.1;gbkey=CDS;product=GDP-mannose pyrophosphatase NudK;protein_id=WP_001300814.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3319513 3321492 . - . ID=gene3279;Name=SH04_RS16430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16430;old_locus_tag=SH04_16435 NZ_CP010443.1 Protein Homology CDS 3319513 3321492 . - 0 ID=cds3197;Parent=gene3279;Dbxref=Genbank:WP_001078880.1;Name=WP_001078880.1;Note=unknown function%3B in E. coli the aegA gene is regulated by Fnr%2C NarXL%2C and NarQ (but not ArcA)%2C induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic);gbkey=CDS;product=protein AegA;protein_id=WP_001078880.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3321698 3323398 . + . ID=gene3280;Name=SH04_RS16435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16435;old_locus_tag=SH04_16440 NZ_CP010443.1 Protein Homology CDS 3321698 3323398 . + 0 ID=cds3198;Parent=gene3280;Dbxref=Genbank:WP_001698424.1;Name=WP_001698424.1;gbkey=CDS;product=nitrate/nitrite two-component system sensor histidine kinase;protein_id=WP_001698424.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3323562 3326675 . + . ID=gene3281;Name=SH04_RS16440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16440;old_locus_tag=SH04_16445 NZ_CP010443.1 Protein Homology CDS 3323562 3326675 . + 0 ID=cds3199;Parent=gene3281;Dbxref=Genbank:WP_001273151.1;Name=WP_001273151.1;gbkey=CDS;product=multidrug efflux RND transporter permease subunit;protein_id=WP_001273151.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3326762 3326941 . + . ID=gene3282;Name=SH04_RS16445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16445;old_locus_tag=SH04_16450 NZ_CP010443.1 Protein Homology CDS 3326762 3326941 . + 0 ID=cds3200;Parent=gene3282;Dbxref=Genbank:WP_001308835.1;Name=WP_001308835.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001308835.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3327214 3327570 . + . ID=gene3283;Name=SH04_RS16450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16450;old_locus_tag=SH04_16455 NZ_CP010443.1 Protein Homology CDS 3327214 3327570 . + 0 ID=cds3201;Parent=gene3283;Dbxref=Genbank:WP_000258236.1;Name=WP_000258236.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000258236.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3327574 3328701 . + . ID=gene3284;Name=SH04_RS16455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16455;old_locus_tag=SH04_16460 NZ_CP010443.1 Protein Homology CDS 3327574 3328701 . + 0 ID=cds3202;Parent=gene3284;Dbxref=Genbank:WP_001277801.1;Name=WP_001277801.1;gbkey=CDS;product=succinyl-diaminopimelate desuccinylase;protein_id=WP_001277801.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3328729 3328929 . + . ID=gene3285;Name=SH04_RS16460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16460;old_locus_tag=SH04_16465 NZ_CP010443.1 Protein Homology CDS 3328729 3328929 . + 0 ID=cds3203;Parent=gene3285;Dbxref=Genbank:WP_000383836.1;Name=WP_000383836.1;gbkey=CDS;product=membrane protein;protein_id=WP_000383836.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3329039 3329737 . - . ID=gene3286;Name=SH04_RS16465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16465;old_locus_tag=SH04_16470 NZ_CP010443.1 Protein Homology CDS 3329039 3329737 . - 0 ID=cds3204;Parent=gene3286;Dbxref=Genbank:WP_000679799.1;Name=WP_000679799.1;gbkey=CDS;product=esterase;protein_id=WP_000679799.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3329811 3331826 . - . ID=gene3287;Name=SH04_RS16470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16470;old_locus_tag=SH04_16475 NZ_CP010443.1 Protein Homology CDS 3329811 3331826 . - 0 ID=cds3205;Parent=gene3287;Dbxref=Genbank:WP_000829360.1;Name=WP_000829360.1;Note=cetylates the wobble base C34 of the elongation-specific methionine tRNA;gbkey=CDS;product=tRNA(Met) cytidine acetyltransferase TmcA;protein_id=WP_000829360.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3331841 3332704 . - . ID=gene3288;Name=SH04_RS16475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16475;old_locus_tag=SH04_16480 NZ_CP010443.1 Protein Homology CDS 3331841 3332704 . - 0 ID=cds3206;Parent=gene3288;Dbxref=Genbank:WP_001267498.1;Name=WP_001267498.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001267498.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3332872 3333585 . - . ID=gene3289;Name=SH04_RS16480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16480;old_locus_tag=SH04_16485 NZ_CP010443.1 Protein Homology CDS 3332872 3333585 . - 0 ID=cds3207;Parent=gene3289;Dbxref=Genbank:WP_001295467.1;Name=WP_001295467.1;Note=catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis%3B SAICAR synthase;gbkey=CDS;product=phosphoribosylaminoimidazole-succinocarboxamide synthase;protein_id=WP_001295467.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3333657 3333887 . + . ID=gene3290;Name=SH04_RS16485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16485;old_locus_tag=SH04_16490 NZ_CP010443.1 Protein Homology CDS 3333657 3333887 . + 0 ID=cds3208;Parent=gene3290;Dbxref=Genbank:WP_001349976.1;Name=WP_001349976.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001349976.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3333798 3334832 . - . ID=gene3291;Name=SH04_RS16490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16490;old_locus_tag=SH04_16495 NZ_CP010443.1 Protein Homology CDS 3333798 3334832 . - 0 ID=cds3209;Parent=gene3291;Dbxref=Genbank:WP_001297320.1;Name=WP_001297320.1;gbkey=CDS;product=outer membrane protein assembly factor BamC;protein_id=WP_001297320.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3334849 3335727 . - . ID=gene3292;Name=SH04_RS16495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16495;old_locus_tag=SH04_16500 NZ_CP010443.1 Protein Homology CDS 3334849 3335727 . - 0 ID=cds3210;Parent=gene3292;Dbxref=Genbank:WP_001311023.1;Name=WP_001311023.1;gbkey=CDS;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=WP_001311023.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3335873 3336445 . + . ID=gene3293;Name=gcvR;gbkey=Gene;gene=gcvR;gene_biotype=protein_coding;locus_tag=SH04_RS16500;old_locus_tag=SH04_16505 NZ_CP010443.1 Protein Homology CDS 3335873 3336445 . + 0 ID=cds3211;Parent=gene3293;Dbxref=Genbank:WP_000176187.1;Name=WP_000176187.1;Note=negative transcriptional regulator of the gcvTHP operon;gbkey=CDS;gene=gcvR;product=glycine cleavage system transcriptional regulator;protein_id=WP_000176187.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3336445 3336915 . + . ID=gene3294;Name=bcp;gbkey=Gene;gene=bcp;gene_biotype=protein_coding;locus_tag=SH04_RS16505;old_locus_tag=SH04_16510 NZ_CP010443.1 Protein Homology CDS 3336445 3336915 . + 0 ID=cds3212;Parent=gene3294;Dbxref=Genbank:WP_001068682.1;Name=WP_001068682.1;Note=bacterioferritin comigratory protein%3B thiol peroxidase%3B thioredoxin-dependent%3B hydroperoxide peroxidase%3B in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide%3B contains an active site cysteine;gbkey=CDS;gene=bcp;product=peroxiredoxin;protein_id=WP_001068682.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3337168 3337785 . + . ID=gene3295;Name=SH04_RS16510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16510;old_locus_tag=SH04_16515 NZ_CP010443.1 Protein Homology CDS 3337168 3337785 . + 0 ID=cds3213;Parent=gene3295;Dbxref=Genbank:WP_001336048.1;Name=WP_001336048.1;gbkey=CDS;product=hydrogenase-4 component A;protein_id=WP_001336048.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3337785 3339803 . + . ID=gene3296;Name=SH04_RS16515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16515;old_locus_tag=SH04_16520 NZ_CP010443.1 Protein Homology CDS 3337785 3339803 . + 0 ID=cds3214;Parent=gene3296;Dbxref=Genbank:WP_000339455.1;Name=WP_000339455.1;gbkey=CDS;product=hydrogenase-4 component B;protein_id=WP_000339455.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3339814 3340761 . + . ID=gene3297;Name=hycD;gbkey=Gene;gene=hycD;gene_biotype=protein_coding;locus_tag=SH04_RS16520;old_locus_tag=SH04_16525 NZ_CP010443.1 Protein Homology CDS 3339814 3340761 . + 0 ID=cds3215;Parent=gene3297;Dbxref=Genbank:WP_001311024.1;Name=WP_001311024.1;Note=formate hydrogenlyase subunit 4%3B HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide;gbkey=CDS;gene=hycD;product=hydrogenase-4 component C;protein_id=WP_001311024.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3340778 3342217 . + . ID=gene3298;Name=SH04_RS16525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16525;old_locus_tag=SH04_16530 NZ_CP010443.1 Protein Homology CDS 3340778 3342217 . + 0 ID=cds3216;Parent=gene3298;Dbxref=Genbank:WP_000429104.1;Name=WP_000429104.1;gbkey=CDS;product=hydrogenase-4 component D;protein_id=WP_000429104.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3342229 3342879 . + . ID=gene3299;Name=hyfE;gbkey=Gene;gene=hyfE;gene_biotype=protein_coding;locus_tag=SH04_RS16530;old_locus_tag=SH04_16535 NZ_CP010443.1 Protein Homology CDS 3342229 3342879 . + 0 ID=cds3217;Parent=gene3299;Dbxref=Genbank:WP_000147987.1;Name=WP_000147987.1;Note=interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide;gbkey=CDS;gene=hyfE;product=hydrogenase-4 component E;protein_id=WP_000147987.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3342884 3344464 . + . ID=gene3300;Name=SH04_RS16535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16535;old_locus_tag=SH04_16540 NZ_CP010443.1 Protein Homology CDS 3342884 3344464 . + 0 ID=cds3218;Parent=gene3300;Dbxref=Genbank:WP_000122577.1;Name=WP_000122577.1;gbkey=CDS;product=hydrogenase-4 component F;protein_id=WP_000122577.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3344454 3346121 . + . ID=gene3301;Name=SH04_RS16540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16540;old_locus_tag=SH04_16545 NZ_CP010443.1 Protein Homology CDS 3344454 3346121 . + 0 ID=cds3219;Parent=gene3301;Dbxref=Genbank:WP_001102321.1;Name=WP_001102321.1;gbkey=CDS;product=hydrogenase-4 component G;protein_id=WP_001102321.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3346131 3346676 . + . ID=gene3302;Name=SH04_RS16545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16545;old_locus_tag=SH04_16550 NZ_CP010443.1 Protein Homology CDS 3346131 3346676 . + 0 ID=cds3220;Parent=gene3302;Dbxref=Genbank:WP_000916055.1;Name=WP_000916055.1;Note=electron transfer protein for hydrogenase-3%3B the formate hydrogenlyase complex comprises of a formate dehydrogenase%2C unidentified electron carriers and hydrogenase-3%3B in this non-energy conserving pathway%2C molecular hydrogen and carbodioxide are released from formate;gbkey=CDS;product=hydrogenase-4 component H;protein_id=WP_000916055.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3346673 3347431 . + . ID=gene3303;Name=SH04_RS16550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16550;old_locus_tag=SH04_16555 NZ_CP010443.1 Protein Homology CDS 3346673 3347431 . + 0 ID=cds3221;Parent=gene3303;Dbxref=Genbank:WP_000075558.1;Name=WP_000075558.1;gbkey=CDS;product=hydrogenase-4 component I;protein_id=WP_000075558.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3347424 3347837 . + . ID=gene3304;Name=SH04_RS16555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16555;old_locus_tag=SH04_16560 NZ_CP010443.1 Protein Homology CDS 3347424 3347837 . + 0 ID=cds3222;Parent=gene3304;Dbxref=Genbank:WP_001326580.1;Name=WP_001326580.1;gbkey=CDS;product=hydrogenase-4 component J;protein_id=WP_001326580.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3347867 3349879 . + . ID=gene3305;Name=SH04_RS16560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16560;old_locus_tag=SH04_16565 NZ_CP010443.1 Protein Homology CDS 3347867 3349879 . + 0 ID=cds3223;Parent=gene3305;Dbxref=Genbank:WP_001251544.1;Name=WP_001251544.1;gbkey=CDS;product=hydrogenase-4 transcriptional activator;protein_id=WP_001251544.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3349901 3350749 . + . ID=gene3306;Name=SH04_RS16565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16565;old_locus_tag=SH04_16570 NZ_CP010443.1 Protein Homology CDS 3349901 3350749 . + 0 ID=cds3224;Parent=gene3306;Dbxref=Genbank:WP_001244734.1;Name=WP_001244734.1;gbkey=CDS;product=formate transporter;protein_id=WP_001244734.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3350787 3351848 . - . ID=gene3307;Name=SH04_RS16570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16570;old_locus_tag=SH04_16575 NZ_CP010443.1 Protein Homology CDS 3350787 3351848 . - 0 ID=cds3225;Parent=gene3307;Dbxref=Genbank:WP_000892044.1;Name=WP_000892044.1;gbkey=CDS;product=permease;protein_id=WP_000892044.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3352061 3353524 . + . ID=gene3308;Name=SH04_RS16575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16575;old_locus_tag=SH04_16580 NZ_CP010443.1 Protein Homology CDS 3352061 3353524 . + 0 ID=cds3226;Parent=gene3308;Dbxref=Genbank:WP_000489667.1;Name=WP_000489667.1;gbkey=CDS;product=beta-barrel assembly-enhancing protease;protein_id=WP_000489667.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3353545 3353904 . + . ID=gene3309;Name=SH04_RS16580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16580;old_locus_tag=SH04_16585 NZ_CP010443.1 Protein Homology CDS 3353545 3353904 . + 0 ID=cds3227;Parent=gene3309;Dbxref=Genbank:WP_000166446.1;Name=WP_000166446.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000166446.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3354042 3354719 . - . ID=gene3310;Name=SH04_RS16585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16585;old_locus_tag=SH04_16590 NZ_CP010443.1 Protein Homology CDS 3354042 3354719 . - 0 ID=cds3228;Parent=gene3310;Dbxref=Genbank:WP_001302391.1;Name=WP_001302391.1;Note=controls initiation of DNA replication by inhibiting re-initiation of replication%2C promotes hydrolysis of DnaA-bound ATP;gbkey=CDS;product=DnaA regulatory inactivator Hda;protein_id=WP_001302391.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3354838 3356127 . - . ID=gene3311;Name=SH04_RS16590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16590;old_locus_tag=SH04_16595 NZ_CP010443.1 Protein Homology CDS 3354838 3356127 . - 0 ID=cds3229;Parent=gene3311;Dbxref=Genbank:WP_000198328.1;Name=WP_000198328.1;gbkey=CDS;product=uracil permease;protein_id=WP_000198328.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3356213 3356839 . - . ID=gene3312;Name=upp;gbkey=Gene;gene=upp;gene_biotype=protein_coding;locus_tag=SH04_RS16595;old_locus_tag=SH04_16600 NZ_CP010443.1 Protein Homology CDS 3356213 3356839 . - 0 ID=cds3230;Parent=gene3312;Dbxref=Genbank:WP_001295473.1;Name=WP_001295473.1;Note=Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate;gbkey=CDS;gene=upp;product=uracil phosphoribosyltransferase;protein_id=WP_001295473.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3357164 3358201 . + . ID=gene3313;Name=SH04_RS16600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16600;old_locus_tag=SH04_16605 NZ_CP010443.1 Protein Homology CDS 3357164 3358201 . + 0 ID=cds3231;Parent=gene3313;Dbxref=Genbank:WP_001336050.1;Name=WP_001336050.1;Note=catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis;gbkey=CDS;product=phosphoribosylformylglycinamidine cyclo-ligase;protein_id=WP_001336050.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3358201 3358839 . + . ID=gene3314;Name=purN;gbkey=Gene;gene=purN;gene_biotype=protein_coding;locus_tag=SH04_RS16605;old_locus_tag=SH04_16610 NZ_CP010443.1 Protein Homology CDS 3358201 3358839 . + 0 ID=cds3232;Parent=gene3314;Dbxref=Genbank:WP_001028612.1;Name=WP_001028612.1;Note=glycinamide ribonucleotide transformylase%3B GAR Tfase%3B catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate%3B PurN requires formyl folate for the reaction unlike PurT which uses formate;gbkey=CDS;gene=purN;product=phosphoribosylglycinamide formyltransferase;protein_id=WP_001028612.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3359011 3361077 . + . ID=gene3315;Name=SH04_RS16610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16610;old_locus_tag=SH04_16615 NZ_CP010443.1 Protein Homology CDS 3359011 3361077 . + 0 ID=cds3233;Parent=gene3315;Dbxref=Genbank:WP_000529576.1;Name=WP_000529576.1;gbkey=CDS;product=polyphosphate kinase;protein_id=WP_000529576.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3361082 3362623 . + . ID=gene3316;Name=SH04_RS16615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16615;old_locus_tag=SH04_16620 NZ_CP010443.1 Protein Homology CDS 3361082 3362623 . + 0 ID=cds3234;Parent=gene3316;Dbxref=Genbank:WP_001121363.1;Name=WP_001121363.1;gbkey=CDS;product=exopolyphosphatase;protein_id=WP_001121363.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3362662 3364905 . - . ID=gene3317;Name=SH04_RS16620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16620;old_locus_tag=SH04_16625 NZ_CP010443.1 Protein Homology CDS 3362662 3364905 . - 0 ID=cds3235;Parent=gene3317;Dbxref=Genbank:WP_000772731.1;Name=WP_000772731.1;gbkey=CDS;product=cyclic di-GMP phosphodiesterase YfgF;protein_id=WP_000772731.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3365087 3365239 . - . ID=gene3318;Name=SH04_RS16625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16625;old_locus_tag=SH04_16630 NZ_CP010443.1 Protein Homology CDS 3365087 3365239 . - 0 ID=cds3236;Parent=gene3318;Dbxref=Genbank:WP_000017552.1;Name=WP_000017552.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000017552.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3365257 3365448 . + . ID=gene3319;Name=SH04_RS16630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16630;old_locus_tag=SH04_16635 NZ_CP010443.1 Protein Homology CDS 3365257 3365448 . + 0 ID=cds3237;Parent=gene3319;Dbxref=Genbank:WP_000076001.1;Name=WP_000076001.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000076001.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3365762 3366277 . + . ID=gene3320;Name=SH04_RS16635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16635;old_locus_tag=SH04_16640 NZ_CP010443.1 Protein Homology CDS 3365762 3366277 . + 0 ID=cds3238;Parent=gene3320;Dbxref=Genbank:WP_000669402.1;Name=WP_000669402.1;gbkey=CDS;product=membrane protein;protein_id=WP_000669402.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3366293 3366832 . + . ID=gene3321;Name=SH04_RS16640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16640;old_locus_tag=SH04_16645 NZ_CP010443.1 Protein Homology CDS 3366293 3366832 . + 0 ID=cds3239;Parent=gene3321;Dbxref=Genbank:WP_038432638.1;Name=WP_038432638.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_038432638.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3366925 3368502 . - . ID=gene3322;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=SH04_RS16645;old_locus_tag=SH04_16650 NZ_CP010443.1 Protein Homology CDS 3366925 3368502 . - 0 ID=cds3240;Parent=gene3322;Dbxref=Genbank:WP_000138270.1;Name=WP_000138270.1;Note=contains glutamine-hydrolyzing domain and glutamine amidotransferase%3B GMP-binding domain%3B functions to produce GMP from XMP in the IMP pathway;gbkey=CDS;gene=guaA;product=GMP synthase [glutamine-hydrolyzing];protein_id=WP_000138270.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3368571 3370037 . - . ID=gene3323;Name=SH04_RS16650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16650;old_locus_tag=SH04_16655 NZ_CP010443.1 Protein Homology CDS 3368571 3370037 . - 0 ID=cds3241;Parent=gene3323;Dbxref=Genbank:WP_001299507.1;Name=WP_001299507.1;gbkey=CDS;product=inosine-5-monophosphate dehydrogenase;protein_id=WP_001299507.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3370199 3371569 . + . ID=gene3324;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=SH04_RS16655;old_locus_tag=SH04_16660 NZ_CP010443.1 Protein Homology CDS 3370199 3371569 . + 0 ID=cds3242;Parent=gene3324;Dbxref=Genbank:WP_000937912.1;Name=WP_000937912.1;Note=bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides;gbkey=CDS;gene=xseA;product=exodeoxyribonuclease 7 large subunit;protein_id=WP_000937912.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3371566 3371781 . - . ID=gene3325;Name=SH04_RS16660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16660;old_locus_tag=SH04_16665 NZ_CP010443.1 Protein Homology CDS 3371566 3371781 . - 0 ID=cds3243;Parent=gene3325;Dbxref=Genbank:WP_001301158.1;Name=WP_001301158.1;gbkey=CDS;product=DUF1407 domain-containing protein;protein_id=WP_001301158.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3371851 3373323 . - . ID=gene3326;Name=SH04_RS16665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16665;old_locus_tag=SH04_16670 NZ_CP010443.1 Protein Homology CDS 3371851 3373323 . - 0 ID=cds3244;Parent=gene3326;Dbxref=Genbank:WP_000249410.1;Name=WP_000249410.1;gbkey=CDS;product=GTPase Der;protein_id=WP_000249410.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3373441 3374619 . - . ID=gene3327;Name=SH04_RS16670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16670;old_locus_tag=SH04_16675 NZ_CP010443.1 Protein Homology CDS 3373441 3374619 . - 0 ID=cds3245;Parent=gene3327;Dbxref=Genbank:WP_001177052.1;Name=WP_001177052.1;gbkey=CDS;product=outer membrane protein assembly factor BamB;protein_id=WP_001177052.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3374630 3375250 . - . ID=gene3328;Name=SH04_RS16675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16675;old_locus_tag=SH04_16680 NZ_CP010443.1 Protein Homology CDS 3374630 3375250 . - 0 ID=cds3246;Parent=gene3328;Dbxref=Genbank:WP_000409205.1;Name=WP_000409205.1;gbkey=CDS;product=ancillary SecYEG translocon subunit;protein_id=WP_000409205.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3375268 3376542 . - . ID=gene3329;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=SH04_RS16680;old_locus_tag=SH04_16685 NZ_CP010443.1 Protein Homology CDS 3375268 3376542 . - 0 ID=cds3247;Parent=gene3329;Dbxref=Genbank:WP_001107167.1;Name=WP_001107167.1;Note=catalyzes a two-step reaction%2C first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B class II aminoacyl-tRNA synthetase%3B forms homodimers%3B some organisms have a paralogous gene%2C hisZ%2C that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG;gbkey=CDS;gene=hisS;product=histidine--tRNA ligase;protein_id=WP_001107167.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3376653 3377771 . - . ID=gene3330;Name=SH04_RS16685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16685;old_locus_tag=SH04_16690 NZ_CP010443.1 Protein Homology CDS 3376653 3377771 . - 0 ID=cds3248;Parent=gene3330;Dbxref=Genbank:WP_000551807.1;Name=WP_000551807.1;gbkey=CDS;product=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin);protein_id=WP_000551807.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3377798 3378811 . - . ID=gene3331;Name=SH04_RS16690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16690;old_locus_tag=SH04_16695 NZ_CP010443.1 Protein Homology CDS 3377798 3378811 . - 0 ID=cds3249;Parent=gene3331;Dbxref=Genbank:WP_001090866.1;Name=WP_001090866.1;gbkey=CDS;product=cytoskeleton protein RodZ;protein_id=WP_001090866.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3379096 3380250 . - . ID=gene3332;Name=SH04_RS16695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16695;old_locus_tag=SH04_16700 NZ_CP010443.1 Protein Homology CDS 3379096 3380250 . - 0 ID=cds3250;Parent=gene3332;Dbxref=Genbank:WP_000003317.1;Name=WP_000003317.1;Note=23S rRNA m2A2503 methyltransferase%3B methylates the C2 position of the A2530 nucleotide in 23S rRNA%3B may be involved in antibiotic resistance;gbkey=CDS;product=23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN;protein_id=WP_000003317.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3380400 3380831 . - . ID=gene3333;Name=SH04_RS16700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16700;old_locus_tag=SH04_16705 NZ_CP010443.1 Protein Homology CDS 3380400 3380831 . - 0 ID=cds3251;Parent=gene3333;Dbxref=Genbank:WP_000963837.1;Name=WP_000963837.1;Note=catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate;gbkey=CDS;product=nucleoside diphosphate kinase;protein_id=WP_000963837.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3380980 3383292 . - . ID=gene3334;Name=SH04_RS16705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16705;old_locus_tag=SH04_16710 NZ_CP010443.1 Protein Homology CDS 3380980 3383292 . - 0 ID=cds3252;Parent=gene3334;Dbxref=Genbank:WP_001137675.1;Name=WP_001137675.1;Note=penicillin-insensitive transglycosylase/transpeptidase;gbkey=CDS;product=penicillin-binding protein 1C;protein_id=WP_001137675.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3383293 3388254 . - . ID=gene3335;Name=SH04_RS16710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16710;old_locus_tag=SH04_16715 NZ_CP010443.1 Protein Homology CDS 3383293 3388254 . - 0 ID=cds3253;Parent=gene3335;Dbxref=Genbank:WP_000736312.1;Name=WP_000736312.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000736312.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3388461 3389306 . + . ID=gene3336;Name=sseA;gbkey=Gene;gene=sseA;gene_biotype=protein_coding;locus_tag=SH04_RS16715;old_locus_tag=SH04_16720 NZ_CP010443.1 Protein Homology CDS 3388461 3389306 . + 0 ID=cds3254;Parent=gene3336;Dbxref=Genbank:WP_000108626.1;Name=WP_000108626.1;Note=catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds;gbkey=CDS;gene=sseA;product=3-mercaptopyruvate sulfurtransferase;protein_id=WP_000108626.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3390124 3390900 . - . ID=gene3337;Name=SH04_RS16720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16720;old_locus_tag=SH04_16725 NZ_CP010443.1 Protein Homology CDS 3390124 3390900 . - 0 ID=cds3255;Parent=gene3337;Dbxref=Genbank:WP_001295479.1;Name=WP_001295479.1;Note=enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I;gbkey=CDS;product=protein SseB;protein_id=WP_001295479.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3391042 3392325 . - . ID=gene3338;Name=SH04_RS16725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16725;old_locus_tag=SH04_16730 NZ_CP010443.1 Protein Homology CDS 3391042 3392325 . - 0 ID=cds3256;Parent=gene3338;Dbxref=Genbank:WP_000133592.1;Name=WP_000133592.1;Note=catalyzes the removal of an N-terminal amino acid from a peptide or arylamide;gbkey=CDS;product=peptidase B;protein_id=WP_000133592.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3392503 3392703 . - . ID=gene3339;Name=SH04_RS16730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16730;old_locus_tag=SH04_16735 NZ_CP010443.1 Protein Homology CDS 3392503 3392703 . - 0 ID=cds3257;Parent=gene3339;Dbxref=Genbank:WP_000523616.1;Name=WP_000523616.1;gbkey=CDS;product=protein IscX;protein_id=WP_000523616.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3392715 3393050 . - . ID=gene3340;Name=SH04_RS16735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16735;old_locus_tag=SH04_16740 NZ_CP010443.1 Protein Homology CDS 3392715 3393050 . - 0 ID=cds3258;Parent=gene3340;Dbxref=Genbank:WP_001124469.1;Name=WP_001124469.1;gbkey=CDS;product=(2Fe-2S) ferredoxin;protein_id=WP_001124469.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3393052 3394902 . - . ID=gene3341;Name=hscA;gbkey=Gene;gene=hscA;gene_biotype=protein_coding;locus_tag=SH04_RS16740;old_locus_tag=SH04_16745 NZ_CP010443.1 Protein Homology CDS 3393052 3394902 . - 0 ID=cds3259;Parent=gene3341;Dbxref=Genbank:WP_001196613.1;Name=WP_001196613.1;Note=involved in the maturation of iron-sulfur cluster-containing proteins;gbkey=CDS;gene=hscA;product=chaperone protein HscA;protein_id=WP_001196613.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3394919 3395434 . - . ID=gene3342;Name=hscB;gbkey=Gene;gene=hscB;gene_biotype=protein_coding;locus_tag=SH04_RS16745;old_locus_tag=SH04_16750 NZ_CP010443.1 Protein Homology CDS 3394919 3395434 . - 0 ID=cds3260;Parent=gene3342;Dbxref=Genbank:WP_000384413.1;Name=WP_000384413.1;Note=J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone%3B may function in biogenesis of iron-sulfur proteins;gbkey=CDS;gene=hscB;product=co-chaperone protein HscB;protein_id=WP_000384413.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3395530 3395853 . - . ID=gene3343;Name=iscA;gbkey=Gene;gene=iscA;gene_biotype=protein_coding;locus_tag=SH04_RS16750;old_locus_tag=SH04_16755 NZ_CP010443.1 Protein Homology CDS 3395530 3395853 . - 0 ID=cds3261;Parent=gene3343;Dbxref=Genbank:WP_000028953.1;Name=WP_000028953.1;Note=forms iron-sulfur clusters of ferredoxin [2FE-2S]%3B binds iron in the presence of the thioredoxin reductase system%3B forms homodimers and tetramers%3B similar to SufA protein;gbkey=CDS;gene=iscA;product=iron-binding protein;protein_id=WP_000028953.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3395870 3396256 . - . ID=gene3344;Name=SH04_RS16755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16755;old_locus_tag=SH04_16760 NZ_CP010443.1 Protein Homology CDS 3395870 3396256 . - 0 ID=cds3262;Parent=gene3344;Dbxref=Genbank:WP_000331707.1;Name=WP_000331707.1;gbkey=CDS;product=Fe-S cluster assembly scaffold IscU;protein_id=WP_000331707.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3396284 3397498 . - . ID=gene3345;Name=SH04_RS16760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16760;old_locus_tag=SH04_16765 NZ_CP010443.1 Protein Homology CDS 3396284 3397498 . - 0 ID=cds3263;Parent=gene3345;Dbxref=Genbank:WP_001295373.1;Name=WP_001295373.1;Note=catalyzes the removal of elemental sulfur from cysteine to produce alanine%3B involved in NAD biosynthesis;gbkey=CDS;product=cysteine desulfurase IscS;protein_id=WP_001295373.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3397610 3398098 . - . ID=gene3346;Name=SH04_RS16765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16765;old_locus_tag=SH04_16770 NZ_CP010443.1 Protein Homology CDS 3397610 3398098 . - 0 ID=cds3264;Parent=gene3346;Dbxref=Genbank:WP_001241357.1;Name=WP_001241357.1;Note=regulates the expression of the iscRSUA operon;gbkey=CDS;product=Fe-S cluster assembly transcriptional regulator IscR;protein_id=WP_001241357.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 3398275 3398550 . + . ID=id177;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3398550 3399290 . - . ID=gene3347;Name=SH04_RS16770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16770;old_locus_tag=SH04_16775 NZ_CP010443.1 Protein Homology CDS 3398550 3399290 . - 0 ID=cds3265;Parent=gene3347;Dbxref=Genbank:WP_000940019.1;Name=WP_000940019.1;Note=catalyzes the fromation of 2'O-methylated cytidine or 2'O-methylated uridine at position 32 in tRNA;gbkey=CDS;product=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;protein_id=WP_000940019.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3399409 3400212 . + . ID=gene3348;Name=SH04_RS16775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16775;old_locus_tag=SH04_16780 NZ_CP010443.1 Protein Homology CDS 3399409 3400212 . + 0 ID=cds3266;Parent=gene3348;Dbxref=Genbank:WP_000553451.1;Name=WP_000553451.1;gbkey=CDS;product=inositol-1-monophosphatase;protein_id=WP_000553451.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3400357 3401211 . + . ID=gene3349;Name=SH04_RS16780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16780;old_locus_tag=SH04_16785 NZ_CP010443.1 Protein Homology CDS 3400357 3401211 . + 0 ID=cds3267;Parent=gene3349;Dbxref=Genbank:WP_001297705.1;Name=WP_001297705.1;gbkey=CDS;product=S9 family prolyl oligopeptidase;protein_id=WP_001297705.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3401402 3402682 . + . ID=gene3350;Name=SH04_RS16785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16785;old_locus_tag=SH04_16790 NZ_CP010443.1 Protein Homology CDS 3401402 3402682 . + 0 ID=cds3268;Parent=gene3350;Dbxref=Genbank:WP_000982994.1;Name=WP_000982994.1;gbkey=CDS;product=stationary phase-inducible protein CsiE;protein_id=WP_000982994.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3402674 3403813 . - . ID=gene3351;Name=SH04_RS16790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16790;old_locus_tag=SH04_16795 NZ_CP010443.1 Protein Homology CDS 3402674 3403813 . - 0 ID=cds3269;Parent=gene3351;Dbxref=Genbank:WP_000244193.1;Name=WP_000244193.1;Note=transporter of 3-phenylpropionate across the inner membrane%3B member of the major facilitator superfamily of transporters;gbkey=CDS;product=3-phenylpropionic acid transporter;protein_id=WP_000244193.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3403973 3404863 . - . ID=gene3352;Name=SH04_RS16795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16795;old_locus_tag=SH04_16800 NZ_CP010443.1 Protein Homology CDS 3403973 3404863 . - 0 ID=cds3270;Parent=gene3352;Dbxref=Genbank:WP_000423261.1;Name=WP_000423261.1;Note=activator of 3-phenylpropionic acid catabolism;gbkey=CDS;product=Hca operon transcriptional activator HcaR;protein_id=WP_000423261.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3404999 3406360 . + . ID=gene3353;Name=SH04_RS16800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16800;old_locus_tag=SH04_16805 NZ_CP010443.1 Protein Homology CDS 3404999 3406360 . + 0 ID=cds3271;Parent=gene3353;Dbxref=Genbank:WP_000211172.1;Name=WP_000211172.1;gbkey=CDS;product=3-phenylpropionate/cinnamic acid dioxygenase subunit alpha;protein_id=WP_000211172.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3406357 3406875 . + . ID=gene3354;Name=SH04_RS16805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16805;old_locus_tag=SH04_16810 NZ_CP010443.1 Protein Homology CDS 3406357 3406875 . + 0 ID=cds3272;Parent=gene3354;Dbxref=Genbank:WP_001276072.1;Name=WP_001276072.1;gbkey=CDS;product=3-phenylpropionate/cinnamic acid dioxygenase subunit beta;protein_id=WP_001276072.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3406875 3407195 . + . ID=gene3355;Name=SH04_RS16810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16810;old_locus_tag=SH04_16815 NZ_CP010443.1 Protein Homology CDS 3406875 3407195 . + 0 ID=cds3273;Parent=gene3355;Dbxref=Genbank:WP_001080102.1;Name=WP_001080102.1;gbkey=CDS;product=3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit;protein_id=WP_001080102.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3407192 3408004 . + . ID=gene3356;Name=SH04_RS16815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16815;old_locus_tag=SH04_16820 NZ_CP010443.1 Protein Homology CDS 3407192 3408004 . + 0 ID=cds3274;Parent=gene3356;Dbxref=Genbank:WP_001281379.1;Name=WP_001281379.1;Note=Converts cis-3-(3-carboxyethyl)-3%2C5-cyclohexadiene-1%2C2-diol (PP-dihydrodiol) into 3-(2%2C3-dihydroxylphenyl)propionate;gbkey=CDS;product=3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase;protein_id=WP_001281379.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3408014 3409216 . + . ID=gene3357;Name=SH04_RS16820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16820;old_locus_tag=SH04_16825 NZ_CP010443.1 Protein Homology CDS 3408014 3409216 . + 0 ID=cds3275;Parent=gene3357;Dbxref=Genbank:WP_000660788.1;Name=WP_000660788.1;gbkey=CDS;product=3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD+ reductase component;protein_id=WP_000660788.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3409313 3409735 . + . ID=gene3358;Name=SH04_RS16825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16825;old_locus_tag=SH04_16830 NZ_CP010443.1 Protein Homology CDS 3409313 3409735 . + 0 ID=cds3276;Parent=gene3358;Dbxref=Genbank:WP_001094726.1;Name=WP_001094726.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001094726.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3409783 3410655 . - . ID=gene3359;Name=SH04_RS16830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16830;old_locus_tag=SH04_16835 NZ_CP010443.1 Protein Homology CDS 3409783 3410655 . - 0 ID=cds3277;Parent=gene3359;Dbxref=Genbank:WP_000158547.1;Name=WP_000158547.1;gbkey=CDS;product=mutarotase superfamily protein%2C YphB family;protein_id=WP_000158547.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3410667 3411728 . - . ID=gene3360;Name=SH04_RS16835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16835;old_locus_tag=SH04_16840 NZ_CP010443.1 Protein Homology CDS 3410667 3411728 . - 0 ID=cds3278;Parent=gene3360;Dbxref=Genbank:WP_001393448.1;Name=WP_001393448.1;gbkey=CDS;product=Zn-dependent NAD(P)-binding oxidoreductase;protein_id=WP_001393448.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3411794 3412792 . - . ID=gene3361;Name=SH04_RS16840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16840;old_locus_tag=SH04_16845 NZ_CP010443.1 Protein Homology CDS 3411794 3412792 . - 0 ID=cds3279;Parent=gene3361;Dbxref=Genbank:WP_001276670.1;Name=WP_001276670.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_001276670.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3412817 3414328 . - . ID=gene3362;Name=SH04_RS16845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16845;old_locus_tag=SH04_16850 NZ_CP010443.1 Protein Homology CDS 3412817 3414328 . - 0 ID=cds3280;Parent=gene3362;Dbxref=Genbank:WP_000493470.1;Name=WP_000493470.1;gbkey=CDS;product=sugar ABC transporter ATPase;protein_id=WP_000493470.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3414351 3415334 . - . ID=gene3363;Name=SH04_RS16850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16850;old_locus_tag=SH04_16855 NZ_CP010443.1 Protein Homology CDS 3414351 3415334 . - 0 ID=cds3281;Parent=gene3363;Dbxref=Genbank:WP_001142427.1;Name=WP_001142427.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_001142427.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3415431 3418712 . - . ID=gene3364;Name=SH04_RS16855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16855;old_locus_tag=SH04_16860 NZ_CP010443.1 Protein Homology CDS 3415431 3418712 . - 0 ID=cds3282;Parent=gene3364;Dbxref=Genbank:WP_001333903.1;Name=WP_001333903.1;gbkey=CDS;product=DUF4380 domain-containing protein;protein_id=WP_001333903.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3418830 3420023 . + . ID=gene3365;Name=SH04_RS16860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16860;old_locus_tag=SH04_16865 NZ_CP010443.1 Protein Homology CDS 3418830 3420023 . + 0 ID=cds3283;Parent=gene3365;Dbxref=Genbank:WP_001200769.1;Name=WP_001200769.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001200769.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3420221 3421474 . - . ID=gene3366;Name=SH04_RS16865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16865;old_locus_tag=SH04_16870 NZ_CP010443.1 Protein Homology CDS 3420221 3421474 . - 0 ID=cds3284;Parent=gene3366;Dbxref=Genbank:WP_000919159.1;Name=WP_000919159.1;gbkey=CDS;product=serine hydroxymethyltransferase;protein_id=WP_000919159.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3421802 3422992 . + . ID=gene3367;Name=SH04_RS16870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16870;old_locus_tag=SH04_16875 NZ_CP010443.1 Protein Homology CDS 3421802 3422992 . + 0 ID=cds3285;Parent=gene3367;Dbxref=Genbank:WP_000883122.1;Name=WP_000883122.1;Note=flavohemoprotein%3B catalyzes the formation of nitrate from nitric oxide%3B can also catalyze the reduction of dihydropteridine;gbkey=CDS;product=flavohemoprotein;protein_id=WP_000883122.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3423037 3423375 . - . ID=gene3368;Name=SH04_RS16875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16875;old_locus_tag=SH04_16880 NZ_CP010443.1 Protein Homology CDS 3423037 3423375 . - 0 ID=cds3286;Parent=gene3368;Dbxref=Genbank:WP_000717694.1;Name=WP_000717694.1;Note=indirectly regulates nitrogen metabolism%3B at high nitrogen levels P-II prevents the phosphorylation of NR-I%2C the transcriptional activator of the glutamine synthetase gene (glnA)%3B at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA;gbkey=CDS;product=nitrogen regulatory protein P-II 1;protein_id=WP_000717694.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3423436 3424770 . - . ID=gene3369;Name=SH04_RS16880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16880;old_locus_tag=SH04_16885 NZ_CP010443.1 Protein Homology CDS 3423436 3424770 . - 0 ID=cds3287;Parent=gene3369;Dbxref=Genbank:WP_001295369.1;Name=WP_001295369.1;Note=with GlrK is part of a two-component signal transduction system regulating glmY;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001295369.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3424760 3425473 . - . ID=gene3370;Name=SH04_RS16885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16885;old_locus_tag=SH04_16890 NZ_CP010443.1 Protein Homology CDS 3424760 3425473 . - 0 ID=cds3288;Parent=gene3370;Dbxref=Genbank:WP_001215861.1;Name=WP_001215861.1;gbkey=CDS;product=quorum-sensing regulator protein G;protein_id=WP_001215861.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3425638 3427065 . - . ID=gene3371;Name=SH04_RS16890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16890;old_locus_tag=SH04_16895 NZ_CP010443.1 Protein Homology CDS 3425638 3427065 . - 0 ID=cds3289;Parent=gene3371;Dbxref=Genbank:WP_001311037.1;Name=WP_001311037.1;Note=part of the GlrKR two-component signal transduction system involved in the regulation of glmY;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_001311037.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3427623 3431510 . - . ID=gene3372;Name=SH04_RS16895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16895;old_locus_tag=SH04_16900 NZ_CP010443.1 Protein Homology CDS 3427623 3431510 . - 0 ID=cds3290;Parent=gene3372;Dbxref=Genbank:WP_000970102.1;Name=WP_000970102.1;Note=catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis;gbkey=CDS;product=phosphoribosylformylglycinamidine synthase;protein_id=WP_000970102.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3431768 3433324 . + . ID=gene3373;Name=SH04_RS16900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16900;old_locus_tag=SH04_16905 NZ_CP010443.1 Protein Homology CDS 3431768 3433324 . + 0 ID=cds3291;Parent=gene3373;Dbxref=Genbank:WP_000734212.1;Name=WP_000734212.1;gbkey=CDS;product=murein transglycosylase;protein_id=WP_000734212.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3433321 3433824 . - . ID=gene3374;Name=SH04_RS16905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16905;old_locus_tag=SH04_16910 NZ_CP010443.1 Protein Homology CDS 3433321 3433824 . - 0 ID=cds3292;Parent=gene3374;Dbxref=Genbank:WP_001297409.1;Name=WP_001297409.1;gbkey=CDS;product=tRNA-specific adenosine deaminase;protein_id=WP_001297409.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3433882 3434517 . - . ID=gene3375;Name=SH04_RS16910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16910;old_locus_tag=SH04_16915 NZ_CP010443.1 Protein Homology CDS 3433882 3434517 . - 0 ID=cds3293;Parent=gene3375;Dbxref=Genbank:WP_000190655.1;Name=WP_000190655.1;gbkey=CDS;product=phosphatidylglycerophosphatase C;protein_id=WP_000190655.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3434726 3435574 . + . ID=gene3376;Name=SH04_RS16915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16915;old_locus_tag=SH04_16920 NZ_CP010443.1 Protein Homology CDS 3434726 3435574 . + 0 ID=cds3294;Parent=gene3376;Dbxref=Genbank:WP_001013779.1;Name=WP_001013779.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001013779.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3435630 3435890 . + . ID=gene3377;Name=SH04_RS16920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16920;old_locus_tag=SH04_16925 NZ_CP010443.1 Protein Homology CDS 3435630 3435890 . + 0 ID=cds3295;Parent=gene3377;Dbxref=Genbank:WP_001196283.1;Name=WP_001196283.1;gbkey=CDS;product=4Fe-4S binding protein;protein_id=WP_001196283.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3436084 3436164 . - . ID=gene3378;Name=SH04_RS16925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16925;old_locus_tag=SH04_16930 NZ_CP010443.1 Protein Homology CDS 3436084 3436164 . - 0 ID=cds3296;Parent=gene3378;Dbxref=Genbank:WP_000128776.1;Name=WP_000128776.1;gbkey=CDS;product=small toxic protein ShoB;protein_id=WP_000128776.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3436161 3436313 . - . ID=gene3379;Name=SH04_RS16930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16930;old_locus_tag=SH04_16935 NZ_CP010443.1 Protein Homology CDS 3436161 3436313 . - 0 ID=cds3297;Parent=gene3379;Dbxref=Genbank:WP_012135949.1;Name=WP_012135949.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012135949.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3436350 3436478 . + . ID=gene3380;Name=SH04_RS16935;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS16935;partial=true;pseudo=true;start_range=.,3436350 NZ_CP010443.1 Protein Homology CDS 3436350 3436478 . + 0 ID=cds3298;Parent=gene3380;gbkey=CDS;partial=true;product=glutamate decarboxylase;pseudo=true;start_range=.,3436350;transl_except=(pos:3436383..3436385%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 3436585 3436965 . - . ID=gene3381;Name=acpS;gbkey=Gene;gene=acpS;gene_biotype=protein_coding;locus_tag=SH04_RS16940;old_locus_tag=SH04_16945 NZ_CP010443.1 Protein Homology CDS 3436585 3436965 . - 0 ID=cds3299;Parent=gene3381;Dbxref=Genbank:WP_000986023.1;Name=WP_000986023.1;Note=Catalyzes the formation of holo-ACP%2C which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids;gbkey=CDS;gene=acpS;product=holo-ACP synthase;protein_id=WP_000986023.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3436965 3437696 . - . ID=gene3382;Name=SH04_RS16945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16945;old_locus_tag=SH04_16950 NZ_CP010443.1 Protein Homology CDS 3436965 3437696 . - 0 ID=cds3300;Parent=gene3382;Dbxref=Genbank:WP_001297412.1;Name=WP_001297412.1;Note=involved in the de novo synthesis of pyridoxine (Vitamin B6);gbkey=CDS;product=pyridoxine 5'-phosphate synthase;protein_id=WP_001297412.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3437708 3438436 . - . ID=gene3383;Name=recO;gbkey=Gene;gene=recO;gene_biotype=protein_coding;locus_tag=SH04_RS16950;old_locus_tag=SH04_16955 NZ_CP010443.1 Protein Homology CDS 3437708 3438436 . - 0 ID=cds3301;Parent=gene3383;Dbxref=Genbank:WP_000399404.1;Name=WP_000399404.1;Note=involved in DNA repair and RecFOR pathway recombination%3B RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA;gbkey=CDS;gene=recO;product=DNA repair protein RecO;protein_id=WP_000399404.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3438448 3439353 . - . ID=gene3384;Name=SH04_RS16955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16955;old_locus_tag=SH04_16960 NZ_CP010443.1 Protein Homology CDS 3438448 3439353 . - 0 ID=cds3302;Parent=gene3384;Dbxref=Genbank:WP_000020749.1;Name=WP_000020749.1;gbkey=CDS;product=GTPase Era;protein_id=WP_000020749.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3439350 3440030 . - . ID=gene3385;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=SH04_RS16960;old_locus_tag=SH04_16965 NZ_CP010443.1 Protein Homology CDS 3439350 3440030 . - 0 ID=cds3303;Parent=gene3385;Dbxref=Genbank:WP_001068343.1;Name=WP_001068343.1;Note=cytoplasmic enzyme involved in processing rRNA and some mRNAs%3B substrates typically have dsRNA regions%3B forms a homodimer%3B have N-terminal nuclease and C-terminal RNA-binding domains%3B requires magnesium as preferred ion for activity;gbkey=CDS;gene=rnc;product=ribonuclease 3;protein_id=WP_001068343.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3440302 3441276 . - . ID=gene3386;Name=SH04_RS16965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16965;old_locus_tag=SH04_16970 NZ_CP010443.1 Protein Homology CDS 3440302 3441276 . - 0 ID=cds3304;Parent=gene3386;Dbxref=Genbank:WP_000002541.1;Name=WP_000002541.1;Note=catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins;gbkey=CDS;product=signal peptidase I;protein_id=WP_000002541.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3441292 3443091 . - . ID=gene3387;Name=SH04_RS16970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16970;old_locus_tag=SH04_16975 NZ_CP010443.1 Protein Homology CDS 3441292 3443091 . - 0 ID=cds3305;Parent=gene3387;Dbxref=Genbank:WP_000790168.1;Name=WP_000790168.1;gbkey=CDS;product=elongation factor 4;protein_id=WP_000790168.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3443289 3443768 . - . ID=gene3388;Name=SH04_RS16975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16975;old_locus_tag=SH04_16980 NZ_CP010443.1 Protein Homology CDS 3443289 3443768 . - 0 ID=cds3306;Parent=gene3388;Dbxref=Genbank:WP_000589068.1;Name=WP_000589068.1;Note=involved in the reduction of the SoxR iron-sulfur cluster;gbkey=CDS;product=protein RseC;protein_id=WP_000589068.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3443765 3444721 . - . ID=gene3389;Name=rseB;gbkey=Gene;gene=rseB;gene_biotype=protein_coding;locus_tag=SH04_RS16980;old_locus_tag=SH04_16985 NZ_CP010443.1 Protein Homology CDS 3443765 3444721 . - 0 ID=cds3307;Parent=gene3389;Dbxref=Genbank:WP_000812053.1;Name=WP_000812053.1;Note=periplasmic protein%3B interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP;gbkey=CDS;gene=rseB;product=sigma-E factor regulatory protein RseB;protein_id=WP_000812053.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3444721 3445371 . - . ID=gene3390;Name=SH04_RS16985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16985;old_locus_tag=SH04_16990 NZ_CP010443.1 Protein Homology CDS 3444721 3445371 . - 0 ID=cds3308;Parent=gene3390;Dbxref=Genbank:WP_001168459.1;Name=WP_001168459.1;gbkey=CDS;product=anti-sigma-E factor RseA;protein_id=WP_001168459.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3445404 3445979 . - . ID=gene3391;Name=SH04_RS16990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16990;old_locus_tag=SH04_16995 NZ_CP010443.1 Protein Homology CDS 3445404 3445979 . - 0 ID=cds3309;Parent=gene3391;Dbxref=Genbank:WP_001295364.1;Name=WP_001295364.1;Note=Member of the extracytoplasmic function sigma factors which are active under specific conditions%3B binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription%3B this sigma factor is involved in heat shock and oxidative stress response;gbkey=CDS;product=ECF RNA polymerase sigma-E factor;protein_id=WP_001295364.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3445976 3446131 . - . ID=gene3392;Name=SH04_RS16995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS16995;old_locus_tag=SH04_17000 NZ_CP010443.1 Protein Homology CDS 3445976 3446131 . - 0 ID=cds3310;Parent=gene3392;Dbxref=Genbank:WP_001303621.1;Name=WP_001303621.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303621.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3446387 3448009 . + . ID=gene3393;Name=SH04_RS17000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17000;old_locus_tag=SH04_17005 NZ_CP010443.1 Protein Homology CDS 3446387 3448009 . + 0 ID=cds3311;Parent=gene3393;Dbxref=Genbank:WP_001094491.1;Name=WP_001094491.1;Note=catalyzes the formation of oxaloacetate from L-aspartate;gbkey=CDS;product=L-aspartate oxidase;protein_id=WP_001094491.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3447994 3448731 . - . ID=gene3394;Name=SH04_RS17005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17005;old_locus_tag=SH04_17010 NZ_CP010443.1 Protein Homology CDS 3447994 3448731 . - 0 ID=cds3312;Parent=gene3394;Dbxref=Genbank:WP_001295363.1;Name=WP_001295363.1;gbkey=CDS;product=tRNA1(Val) (adenine(37)-N6)-methyltransferase;protein_id=WP_001295363.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3448863 3450197 . + . ID=gene3395;Name=SH04_RS17010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17010;old_locus_tag=SH04_17015 NZ_CP010443.1 Protein Homology CDS 3448863 3450197 . + 0 ID=cds3313;Parent=gene3395;Dbxref=Genbank:WP_000219203.1;Name=WP_000219203.1;Note=facilitates an early step in the assembly of the 50S subunit of the ribosome;gbkey=CDS;product=ATP-dependent RNA helicase SrmB;protein_id=WP_000219203.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3450203 3450355 . + . ID=gene3396;Name=SH04_RS17015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17015;old_locus_tag=SH04_17020 NZ_CP010443.1 Protein Homology CDS 3450203 3450355 . + 0 ID=cds3314;Parent=gene3396;Dbxref=Genbank:WP_001299513.1;Name=WP_001299513.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001299513.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3450406 3451287 . - . ID=gene3397;Name=SH04_RS17020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17020;old_locus_tag=SH04_17025 NZ_CP010443.1 Protein Homology CDS 3450406 3451287 . - 0 ID=cds3315;Parent=gene3397;Dbxref=Genbank:WP_001300638.1;Name=WP_001300638.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001300638.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3451390 3451977 . + . ID=gene3398;Name=SH04_RS17025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17025;old_locus_tag=SH04_17030 NZ_CP010443.1 Protein Homology CDS 3451390 3451977 . + 0 ID=cds3316;Parent=gene3398;Dbxref=Genbank:WP_000189207.1;Name=WP_000189207.1;gbkey=CDS;product=cysteine/O-acetylserine efflux protein;protein_id=WP_000189207.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3452033 3452416 . - . ID=gene3399;Name=SH04_RS17030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17030;old_locus_tag=SH04_17035 NZ_CP010443.1 Protein Homology CDS 3452033 3452416 . - 0 ID=cds3317;Parent=gene3399;Dbxref=Genbank:WP_000627807.1;Name=WP_000627807.1;Note=stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit;gbkey=CDS;product=autonomous glycyl radical cofactor GrcA;protein_id=WP_000627807.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3452721 3453410 . + . ID=gene3400;Name=SH04_RS17035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17035;old_locus_tag=SH04_17040 NZ_CP010443.1 Protein Homology CDS 3452721 3453410 . + 0 ID=cds3318;Parent=gene3400;Dbxref=Genbank:WP_001262716.1;Name=WP_001262716.1;Note=Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine;gbkey=CDS;product=uracil-DNA glycosylase;protein_id=WP_001262716.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3453458 3454495 . - . ID=gene3401;Name=SH04_RS17040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17040;old_locus_tag=SH04_17045 NZ_CP010443.1 Protein Homology CDS 3453458 3454495 . - 0 ID=cds3319;Parent=gene3401;Dbxref=Genbank:WP_000997403.1;Name=WP_000997403.1;gbkey=CDS;product=methyltransferase;protein_id=WP_000997403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3454485 3454643 . - . ID=gene3402;Name=SH04_RS17045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17045;old_locus_tag=SH04_17050 NZ_CP010443.1 Protein Homology CDS 3454485 3454643 . - 0 ID=cds3320;Parent=gene3402;Dbxref=Genbank:WP_000902363.1;Name=WP_000902363.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000902363.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3454702 3455121 . + . ID=gene3403;Name=SH04_RS17050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17050;old_locus_tag=SH04_17055 NZ_CP010443.1 Protein Homology CDS 3454702 3455121 . + 0 ID=cds3321;Parent=gene3403;Dbxref=Genbank:WP_001098726.1;Name=WP_001098726.1;gbkey=CDS;product=thioredoxin;protein_id=WP_001098726.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3455190 3455888 . + . ID=gene3404;Name=SH04_RS17055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17055;old_locus_tag=SH04_17060 NZ_CP010443.1 Protein Homology CDS 3455190 3455888 . + 0 ID=cds3322;Parent=gene3404;Dbxref=Genbank:WP_001300438.1;Name=WP_001300438.1;gbkey=CDS;product=DTW domain-containing protein YfiP;protein_id=WP_001300438.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3455920 3458580 . + . ID=gene3405;Name=SH04_RS17060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17060;old_locus_tag=SH04_17065 NZ_CP010443.1 Protein Homology CDS 3455920 3458580 . + 0 ID=cds3323;Parent=gene3405;Dbxref=Genbank:WP_000083005.1;Name=WP_000083005.1;Note=catalyzes the acetylation of lysine;gbkey=CDS;product=protein lysine acetyltransferase Pka;protein_id=WP_000083005.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3458694 3460049 . + . ID=gene3406;Name=pssA;gbkey=Gene;gene=pssA;gene_biotype=protein_coding;locus_tag=SH04_RS17065;old_locus_tag=SH04_17070 NZ_CP010443.1 Protein Homology CDS 3458694 3460049 . + 0 ID=cds3324;Parent=gene3406;Dbxref=Genbank:WP_000949265.1;Name=WP_000949265.1;Note=catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine%3B bounds to the ribosome;gbkey=CDS;gene=pssA;product=CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=WP_000949265.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3460146 3460418 . + . ID=gene3407;Name=SH04_RS17070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17070;old_locus_tag=SH04_17075 NZ_CP010443.1 Protein Homology CDS 3460146 3460418 . + 0 ID=cds3325;Parent=gene3407;Dbxref=Genbank:WP_001262565.1;Name=WP_001262565.1;gbkey=CDS;product=lipoprotein;protein_id=WP_001262565.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3460415 3461713 . - . ID=gene3408;Name=SH04_RS17075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17075;old_locus_tag=SH04_17080 NZ_CP010443.1 Protein Homology CDS 3460415 3461713 . - 0 ID=cds3326;Parent=gene3408;Dbxref=Genbank:WP_000841103.1;Name=WP_000841103.1;gbkey=CDS;product=alpha-ketoglutarate permease;protein_id=WP_000841103.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3461829 3462029 . - . ID=gene3409;Name=SH04_RS17080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17080 NZ_CP010443.1 Protein Homology CDS 3461829 3462029 . - 0 ID=cds3327;Parent=gene3409;Dbxref=Genbank:WP_001223975.1;Name=WP_001223975.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001223975.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 3462029 3465264 . + . ID=id178;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3462038 3462153 . - . ID=gene3410;Name=SH04_RS17085;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS17085;old_locus_tag=SH04_17090 NZ_CP010443.1 cmsearch rRNA 3462038 3462153 . - . ID=rna82;Parent=gene3410;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 cmsearch exon 3462038 3462153 . - . ID=id179;Parent=rna82;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 RefSeq gene 3462231 3465160 . - . ID=gene3411;Name=SH04_RS17090;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS17090;old_locus_tag=SH04_17095 NZ_CP010443.1 RefSeq rRNA 3462231 3465160 . - . ID=rna83;Parent=gene3411;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010443.1 RefSeq exon 3462231 3465160 . - . ID=id180;Parent=rna83;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010443.1 RefSeq gene 3465336 3465411 . - . ID=gene3412;Name=SH04_RS17095;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS17095;old_locus_tag=SH04_17100 NZ_CP010443.1 tRNAscan-SE tRNA 3465336 3465411 . - . ID=rna84;Parent=gene3412;anticodon=(pos:complement(3465375..3465377));gbkey=tRNA;product=tRNA-Glu NZ_CP010443.1 tRNAscan-SE exon 3465336 3465411 . - . ID=id181;Parent=rna84;anticodon=(pos:complement(3465375..3465377));gbkey=tRNA;product=tRNA-Glu NZ_CP010443.1 RefSeq repeat_region 3465518 3467452 . + . ID=id182;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3465571 3467126 . - . ID=gene3413;Name=SH04_RS17100;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS17100;old_locus_tag=SH04_17105 NZ_CP010443.1 RefSeq rRNA 3465571 3467126 . - . ID=rna85;Parent=gene3413;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010443.1 RefSeq exon 3465571 3467126 . - . ID=id183;Parent=rna85;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010443.1 RefSeq gene 3467567 3470140 . - . ID=gene3414;Name=SH04_RS17105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17105;old_locus_tag=SH04_17110 NZ_CP010443.1 Protein Homology CDS 3467567 3470140 . - 0 ID=cds3328;Parent=gene3414;Dbxref=Genbank:WP_001235102.1;Name=WP_001235102.1;gbkey=CDS;product=chaperone protein ClpB;protein_id=WP_001235102.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3470270 3471001 . - . ID=gene3415;Name=SH04_RS17110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17110;old_locus_tag=SH04_17115 NZ_CP010443.1 Protein Homology CDS 3470270 3471001 . - 0 ID=cds3329;Parent=gene3415;Dbxref=Genbank:WP_000040169.1;Name=WP_000040169.1;gbkey=CDS;product=Laccase YfiH;protein_id=WP_000040169.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3470998 3471978 . - . ID=gene3416;Name=rluD;gbkey=Gene;gene=rluD;gene_biotype=protein_coding;locus_tag=SH04_RS17115;old_locus_tag=SH04_17120 NZ_CP010443.1 Protein Homology CDS 3470998 3471978 . - 0 ID=cds3330;Parent=gene3416;Dbxref=Genbank:WP_000079100.1;Name=WP_000079100.1;Note=responsible for synthesis of pseudouridine from uracil at positions 1911%2C 1915 and 1917 in 23S ribosomal RNA;gbkey=CDS;gene=rluD;product=ribosomal large subunit pseudouridine synthase D;protein_id=WP_000079100.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3472113 3472850 . + . ID=gene3417;Name=SH04_RS17120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17120;old_locus_tag=SH04_17125 NZ_CP010443.1 Protein Homology CDS 3472113 3472850 . + 0 ID=cds3331;Parent=gene3417;Dbxref=Genbank:WP_000197686.1;Name=WP_000197686.1;gbkey=CDS;product=outer membrane protein assembly factor BamD;protein_id=WP_000197686.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3472880 3473086 . + . ID=gene3418;Name=SH04_RS17125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17125;old_locus_tag=SH04_17130 NZ_CP010443.1 Protein Homology CDS 3472880 3473086 . + 0 ID=cds3332;Parent=gene3418;Dbxref=Genbank:WP_001336203.1;Name=WP_001336203.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001336203.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3473121 3473462 . + . ID=gene3419;Name=SH04_RS17130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17130;old_locus_tag=SH04_17135 NZ_CP010443.1 Protein Homology CDS 3473121 3473462 . + 0 ID=cds3333;Parent=gene3419;Dbxref=Genbank:WP_000178456.1;Name=WP_000178456.1;Note=associated with 30S ribosomal subunit%3B interferes with translation elongation;gbkey=CDS;product=ribosome-associated inhibitor A;protein_id=WP_000178456.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3473712 3474872 . + . ID=gene3420;Name=pheA;gbkey=Gene;gene=pheA;gene_biotype=protein_coding;locus_tag=SH04_RS17135;old_locus_tag=SH04_17140 NZ_CP010443.1 Protein Homology CDS 3473712 3474872 . + 0 ID=cds3334;Parent=gene3420;Dbxref=Genbank:WP_000200120.1;Name=WP_000200120.1;Note=catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis;gbkey=CDS;gene=pheA;product=P-protein;protein_id=WP_000200120.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3474915 3476036 . - . ID=gene3421;Name=tyrA;gbkey=Gene;gene=tyrA;gene_biotype=protein_coding;locus_tag=SH04_RS17140;old_locus_tag=SH04_17145 NZ_CP010443.1 Protein Homology CDS 3474915 3476036 . - 0 ID=cds3335;Parent=gene3421;Dbxref=Genbank:WP_000225229.1;Name=WP_000225229.1;Note=catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis;gbkey=CDS;gene=tyrA;product=T-protein;protein_id=WP_000225229.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3476047 3477117 . - . ID=gene3422;Name=SH04_RS17145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17145;old_locus_tag=SH04_17150 NZ_CP010443.1 Protein Homology CDS 3476047 3477117 . - 0 ID=cds3336;Parent=gene3422;Dbxref=Genbank:WP_001168037.1;Name=WP_001168037.1;Note=catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C tyrosine sensitive;gbkey=CDS;product=phospho-2-dehydro-3-deoxyheptonate aldolase Tyr-sensitive;protein_id=WP_001168037.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3477327 3477692 . + . ID=gene3423;Name=SH04_RS17150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17150;old_locus_tag=SH04_17155 NZ_CP010443.1 Protein Homology CDS 3477327 3477692 . + 0 ID=cds3337;Parent=gene3423;Dbxref=Genbank:WP_000976004.1;Name=WP_000976004.1;gbkey=CDS;product=lipoprotein;protein_id=WP_000976004.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3477842 3478360 . + . ID=gene3424;Name=SH04_RS17155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17155;old_locus_tag=SH04_17160 NZ_CP010443.1 Protein Homology CDS 3477842 3478360 . + 0 ID=cds3338;Parent=gene3424;Dbxref=Genbank:WP_001212391.1;Name=WP_001212391.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001212391.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3478353 3479576 . + . ID=gene3425;Name=SH04_RS17160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17160;old_locus_tag=SH04_17165 NZ_CP010443.1 Protein Homology CDS 3478353 3479576 . + 0 ID=cds3339;Parent=gene3425;Dbxref=Genbank:WP_001297662.1;Name=WP_001297662.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_001297662.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3479592 3480074 . + . ID=gene3426;Name=SH04_RS17165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17165;old_locus_tag=SH04_17170 NZ_CP010443.1 Protein Homology CDS 3479592 3480074 . + 0 ID=cds3340;Parent=gene3426;Dbxref=Genbank:WP_000589847.1;Name=WP_000589847.1;gbkey=CDS;product=OM lipoprotein positive effector of YfiN activity;protein_id=WP_000589847.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3480150 3480497 . - . ID=gene3427;Name=SH04_RS17170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17170;old_locus_tag=SH04_17175 NZ_CP010443.1 Protein Homology CDS 3480150 3480497 . - 0 ID=cds3341;Parent=gene3427;Dbxref=Genbank:WP_000065253.1;Name=WP_000065253.1;gbkey=CDS;product=50S ribosomal protein L19;protein_id=WP_000065253.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3480539 3481306 . - . ID=gene3428;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=SH04_RS17175;old_locus_tag=SH04_17180 NZ_CP010443.1 Protein Homology CDS 3480539 3481306 . - 0 ID=cds3342;Parent=gene3428;Dbxref=Genbank:WP_000264777.1;Name=WP_000264777.1;Note=methylates guanosine-37 in various tRNAs%3B uses S-adenosyl-L-methionine to transfer methyl group to tRNA;gbkey=CDS;gene=trmD;product=tRNA (guanine-N(1)-)-methyltransferase;protein_id=WP_000264777.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3481337 3481885 . - . ID=gene3429;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=SH04_RS17180;old_locus_tag=SH04_17185 NZ_CP010443.1 Protein Homology CDS 3481337 3481885 . - 0 ID=cds3343;Parent=gene3429;Dbxref=Genbank:WP_000043335.1;Name=WP_000043335.1;Note=Essential for efficient processing of 16S rRNA;gbkey=CDS;gene=rimM;product=ribosome maturation factor RimM;protein_id=WP_000043335.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3481904 3482152 . - . ID=gene3430;Name=SH04_RS17185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17185;old_locus_tag=SH04_17190 NZ_CP010443.1 Protein Homology CDS 3481904 3482152 . - 0 ID=cds3344;Parent=gene3430;Dbxref=Genbank:WP_000256450.1;Name=WP_000256450.1;gbkey=CDS;product=30S ribosomal protein S16;protein_id=WP_000256450.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3482401 3483762 . - . ID=gene3431;Name=SH04_RS17190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17190;old_locus_tag=SH04_17195 NZ_CP010443.1 Protein Homology CDS 3482401 3483762 . - 0 ID=cds3345;Parent=gene3431;Dbxref=Genbank:WP_000460035.1;Name=WP_000460035.1;gbkey=CDS;product=signal recognition particle protein;protein_id=WP_000460035.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3483929 3484720 . + . ID=gene3432;Name=SH04_RS17195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17195;old_locus_tag=SH04_17200 NZ_CP010443.1 Protein Homology CDS 3483929 3484720 . + 0 ID=cds3346;Parent=gene3432;Dbxref=Genbank:WP_001338897.1;Name=WP_001338897.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001338897.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3484786 3486027 . + . ID=gene3433;Name=SH04_RS17200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17200;old_locus_tag=SH04_17205 NZ_CP010443.1 Protein Homology CDS 3484786 3486027 . + 0 ID=cds3347;Parent=gene3433;Dbxref=Genbank:WP_001307349.1;Name=WP_001307349.1;gbkey=CDS;product=membrane protein;protein_id=WP_001307349.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3486082 3486675 . - . ID=gene3434;Name=SH04_RS17205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17205;old_locus_tag=SH04_17210 NZ_CP010443.1 Protein Homology CDS 3486082 3486675 . - 0 ID=cds3348;Parent=gene3434;Dbxref=Genbank:WP_001393454.1;Name=WP_001393454.1;Note=with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins%3B may act as a thermosensor;gbkey=CDS;product=protein GrpE;protein_id=WP_001393454.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3486672 3486836 . - . ID=gene3435;Name=SH04_RS17210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17210;old_locus_tag=SH04_17215 NZ_CP010443.1 Protein Homology CDS 3486672 3486836 . - 0 ID=cds3349;Parent=gene3435;Dbxref=Genbank:WP_001312029.1;Name=WP_001312029.1;gbkey=CDS;product=heat-shock protein;protein_id=WP_001312029.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3486798 3487676 . + . ID=gene3436;Name=ppnK;gbkey=Gene;gene=ppnK;gene_biotype=protein_coding;locus_tag=SH04_RS17215;old_locus_tag=SH04_17220 NZ_CP010443.1 Protein Homology CDS 3486798 3487676 . + 0 ID=cds3350;Parent=gene3436;Dbxref=Genbank:WP_001059169.1;Name=WP_001059169.1;Note=catalyzes the phosphorylation of NAD to NADP;gbkey=CDS;gene=ppnK;product=NAD kinase;protein_id=WP_001059169.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3487762 3489423 . + . ID=gene3437;Name=SH04_RS17220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17220;old_locus_tag=SH04_17225 NZ_CP010443.1 Protein Homology CDS 3487762 3489423 . + 0 ID=cds3351;Parent=gene3437;Dbxref=Genbank:WP_000880910.1;Name=WP_000880910.1;gbkey=CDS;product=DNA repair protein RecN;protein_id=WP_000880910.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3489572 3489913 . + . ID=gene3438;Name=SH04_RS17225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17225;old_locus_tag=SH04_17230 NZ_CP010443.1 Protein Homology CDS 3489572 3489913 . + 0 ID=cds3352;Parent=gene3438;Dbxref=Genbank:WP_001203437.1;Name=WP_001203437.1;gbkey=CDS;product=outer membrane protein assembly factor BamE;protein_id=WP_001203437.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3489975 3490265 . - . ID=gene3439;Name=SH04_RS17230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17230;old_locus_tag=SH04_17235 NZ_CP010443.1 Protein Homology CDS 3489975 3490265 . - 0 ID=cds3353;Parent=gene3439;Dbxref=Genbank:WP_001117838.1;Name=WP_001117838.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001117838.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3490255 3490731 . - . ID=gene3440;Name=SH04_RS17235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17235;old_locus_tag=SH04_17240 NZ_CP010443.1 Protein Homology CDS 3490255 3490731 . - 0 ID=cds3354;Parent=gene3440;Dbxref=Genbank:WP_000600189.1;Name=WP_000600189.1;gbkey=CDS;product=ribosome association toxin RatA;protein_id=WP_000600189.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3490863 3491345 . + . ID=gene3441;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;locus_tag=SH04_RS17240;old_locus_tag=SH04_17245 NZ_CP010443.1 Protein Homology CDS 3490863 3491345 . + 0 ID=cds3355;Parent=gene3441;Dbxref=Genbank:WP_000162574.1;Name=WP_000162574.1;Note=binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes%3B also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site%3B SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus%3B both the tmRNA and SmpB are regulated in cell cycle-dependent manner%3B functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation;gbkey=CDS;gene=smpB;product=SsrA-binding protein;protein_id=WP_000162574.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3492126 3493367 . + . ID=gene3442;Name=SH04_RS17245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17245;old_locus_tag=SH04_17250 NZ_CP010443.1 Protein Homology CDS 3492126 3493367 . + 0 ID=cds3356;Parent=gene3442;Dbxref=Genbank:WP_000101723.1;Name=WP_000101723.1;gbkey=CDS;product=integrase;protein_id=WP_000101723.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3493611 3494486 . - . ID=gene3443;Name=SH04_RS17250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17250;old_locus_tag=SH04_17255 NZ_CP010443.1 Protein Homology CDS 3493611 3494486 . - 0 ID=cds3357;Parent=gene3443;Dbxref=Genbank:WP_023649320.1;Name=WP_023649320.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023649320.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3494611 3494823 . + . ID=gene3444;Name=SH04_RS17255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17255;old_locus_tag=SH04_17260 NZ_CP010443.1 Protein Homology CDS 3494611 3494823 . + 0 ID=cds3358;Parent=gene3444;Dbxref=Genbank:WP_001065343.1;Name=WP_001065343.1;gbkey=CDS;product=regulator AlpA;protein_id=WP_001065343.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3494952 3496361 . + . ID=gene3445;Name=SH04_RS17260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17260;old_locus_tag=SH04_17265 NZ_CP010443.1 Protein Homology CDS 3494952 3496361 . + 0 ID=cds3359;Parent=gene3445;Dbxref=Genbank:WP_000481742.1;Name=WP_000481742.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000481742.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 3495848 3496053 . + . ID=id184;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3496514 3497140 . + . ID=gene3446;Name=SH04_RS17265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17265;old_locus_tag=SH04_17270 NZ_CP010443.1 Protein Homology CDS 3496514 3497140 . + 0 ID=cds3360;Parent=gene3446;Dbxref=Genbank:WP_000220524.1;Name=WP_000220524.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000220524.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3497318 3499507 . - . ID=gene3447;Name=SH04_RS17270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17270;old_locus_tag=SH04_17275 NZ_CP010443.1 Protein Homology CDS 3497318 3499507 . - 0 ID=cds3361;Parent=gene3447;Dbxref=Genbank:WP_000136402.1;Name=WP_000136402.1;gbkey=CDS;product=DEAD/DEAH box helicase;protein_id=WP_000136402.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3499504 3501120 . - . ID=gene3448;Name=SH04_RS17275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17275;old_locus_tag=SH04_17280 NZ_CP010443.1 Protein Homology CDS 3499504 3501120 . - 0 ID=cds3362;Parent=gene3448;Dbxref=Genbank:WP_000445380.1;Name=WP_000445380.1;gbkey=CDS;product=CP4-57 defective prophage%2C DUF4297/DUF1837 polymorphic toxin family protein;protein_id=WP_000445380.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3501480 3501743 . - . ID=gene3449;Name=SH04_RS17280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17280;old_locus_tag=SH04_17285 NZ_CP010443.1 Protein Homology CDS 3501480 3501743 . - 0 ID=cds3363;Parent=gene3449;Dbxref=Genbank:WP_000502050.1;Name=WP_000502050.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000502050.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3501885 3502958 . + . ID=gene3450;Name=SH04_RS17285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17285;old_locus_tag=SH04_17290 NZ_CP010443.1 Protein Homology CDS 3501885 3502958 . + 0 ID=cds3364;Parent=gene3450;Dbxref=Genbank:WP_000155570.1;Name=WP_000155570.1;gbkey=CDS;product=mRNA endoribonuclease LS;protein_id=WP_000155570.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3502951 3503322 . + . ID=gene3451;Name=SH04_RS17290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17290;old_locus_tag=SH04_17295 NZ_CP010443.1 Protein Homology CDS 3502951 3503322 . + 0 ID=cds3365;Parent=gene3451;Dbxref=Genbank:WP_000461704.1;Name=WP_000461704.1;gbkey=CDS;product=antitoxin RnlB;protein_id=WP_000461704.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3503677 3504540 . + . ID=gene3452;Name=SH04_RS17295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17295;old_locus_tag=SH04_17300 NZ_CP010443.1 Protein Homology CDS 3503677 3504540 . + 0 ID=cds3366;Parent=gene3452;Dbxref=Genbank:WP_000787597.1;Name=WP_000787597.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000787597.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3504632 3505453 . + . ID=gene3453;Name=SH04_RS17300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17300;old_locus_tag=SH04_17305 NZ_CP010443.1 Protein Homology CDS 3504632 3505453 . + 0 ID=cds3367;Parent=gene3453;Dbxref=Genbank:WP_000197391.1;Name=WP_000197391.1;gbkey=CDS;product=UPF0380 protein YfjQ;protein_id=WP_000197391.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3505670 3506371 . + . ID=gene3454;Name=SH04_RS17305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17305;old_locus_tag=SH04_17310 NZ_CP010443.1 Protein Homology CDS 3505670 3506371 . + 0 ID=cds3368;Parent=gene3454;Dbxref=Genbank:WP_000189409.1;Name=WP_000189409.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000189409.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3506412 3506648 . + . ID=gene3455;Name=SH04_RS17310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17310;old_locus_tag=SH04_17315 NZ_CP010443.1 Protein Homology CDS 3506412 3506648 . + 0 ID=cds3369;Parent=gene3455;Dbxref=Genbank:WP_001144029.1;Name=WP_001144029.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001144029.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3506648 3507091 . + . ID=gene3456;Name=SH04_RS17315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17315;old_locus_tag=SH04_17320 NZ_CP010443.1 Protein Homology CDS 3506648 3507091 . + 0 ID=cds3370;Parent=gene3456;Dbxref=Genbank:WP_000824222.1;Name=WP_000824222.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000824222.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3507115 3507582 . + . ID=gene3457;Name=SH04_RS17320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17320;old_locus_tag=SH04_17325 NZ_CP010443.1 Protein Homology CDS 3507115 3507582 . + 0 ID=cds3371;Parent=gene3457;Dbxref=Genbank:WP_000702495.1;Name=WP_000702495.1;gbkey=CDS;product=periplasmic protein;protein_id=WP_000702495.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3507807 3508121 . - . ID=gene3458;Name=SH04_RS17325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17325;old_locus_tag=SH04_17330 NZ_CP010443.1 Protein Homology CDS 3507807 3508121 . - 0 ID=cds3372;Parent=gene3458;Dbxref=Genbank:WP_000065803.1;Name=WP_000065803.1;gbkey=CDS;product=arsenate reductase;protein_id=WP_000065803.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3508134 3509149 . - . ID=gene3459;Name=SH04_RS17330;end_range=3509149,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS17330;partial=true;pseudo=true NZ_CP010443.1 Protein Homology CDS 3508134 3509149 . - 0 ID=cds3373;Parent=gene3459;end_range=3509149,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=arsenic transporter;pseudo=true;transl_except=(pos:complement(3508803..3508805)%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 3509285 3510988 . + . ID=gene3460;Name=SH04_RS17335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17335;old_locus_tag=SH04_17340 NZ_CP010443.1 Protein Homology CDS 3509285 3510988 . + 0 ID=cds3374;Parent=gene3460;Dbxref=Genbank:WP_000896263.1;Name=WP_000896263.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000896263.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3511886 3512344 . + . ID=gene3461;Name=SH04_RS17340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17340;old_locus_tag=SH04_17345 NZ_CP010443.1 Protein Homology CDS 3511886 3512344 . + 0 ID=cds3375;Parent=gene3461;Dbxref=Genbank:WP_000211841.1;Name=WP_000211841.1;gbkey=CDS;product=antirestriction protein;protein_id=WP_000211841.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3512353 3512835 . + . ID=gene3462;Name=SH04_RS17345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17345;old_locus_tag=SH04_17350 NZ_CP010443.1 Protein Homology CDS 3512353 3512835 . + 0 ID=cds3376;Parent=gene3462;Dbxref=Genbank:WP_001407480.1;Name=WP_001407480.1;gbkey=CDS;product=DNA repair protein;protein_id=WP_001407480.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3513082 3513399 . + . ID=gene3463;Name=SH04_RS17350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17350;old_locus_tag=SH04_17355 NZ_CP010443.1 Protein Homology CDS 3513082 3513399 . + 0 ID=cds3377;Parent=gene3463;Dbxref=Genbank:WP_000072690.1;Name=WP_000072690.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000072690.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3513420 3513749 . + . ID=gene3464;Name=SH04_RS17355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17355;old_locus_tag=SH04_17360 NZ_CP010443.1 Protein Homology CDS 3513420 3513749 . + 0 ID=cds3378;Parent=gene3464;Dbxref=Genbank:WP_001094400.1;Name=WP_001094400.1;gbkey=CDS;product=toxin YpjF;protein_id=WP_001094400.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 3514103 3514457 . + . ID=id185;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3514113 3514325 . - . ID=gene3465;Name=SH04_RS17360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17360;old_locus_tag=SH04_17365 NZ_CP010443.1 Protein Homology CDS 3514113 3514325 . - 0 ID=cds3379;Parent=gene3465;Dbxref=Genbank:WP_001300493.1;Name=WP_001300493.1;gbkey=CDS;product=ATPase;protein_id=WP_001300493.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3519032 3519175 . - . ID=gene3466;Name=SH04_RS17370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17370;old_locus_tag=SH04_17375 NZ_CP010443.1 Protein Homology CDS 3519032 3519175 . - 0 ID=cds3380;Parent=gene3466;Dbxref=Genbank:WP_000264670.1;Name=WP_000264670.1;gbkey=CDS;product=DNA invertase;protein_id=WP_000264670.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3519605 3520396 . - . ID=gene3467;Name=SH04_RS17375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17375;old_locus_tag=SH04_17380 NZ_CP010443.1 Protein Homology CDS 3519605 3520396 . - 0 ID=cds3381;Parent=gene3467;Dbxref=Genbank:WP_000445897.1;Name=WP_000445897.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000445897.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3520496 3520978 . - . ID=gene3468;Name=SH04_RS17380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17380;old_locus_tag=SH04_17385 NZ_CP010443.1 Protein Homology CDS 3520496 3520978 . - 0 ID=cds3382;Parent=gene3468;Dbxref=Genbank:WP_000961356.1;Name=WP_000961356.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000961356.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3521729 3521804 . - . ID=gene3469;Name=SH04_RS17390;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS17390;old_locus_tag=SH04_17395 NZ_CP010443.1 tRNAscan-SE tRNA 3521729 3521804 . - . ID=rna86;Parent=gene3469;anticodon=(pos:complement(3521769..3521771));gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 tRNAscan-SE exon 3521729 3521804 . - . ID=id186;Parent=rna86;anticodon=(pos:complement(3521769..3521771));gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 RefSeq gene 3522715 3523401 . + . ID=gene3470;Name=SH04_RS17395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17395;old_locus_tag=SH04_17400 NZ_CP010443.1 Protein Homology CDS 3522715 3523401 . + 0 ID=cds3383;Parent=gene3470;Dbxref=Genbank:WP_000572607.1;Name=WP_000572607.1;gbkey=CDS;product=alpha-1%2C2-mannosidase;protein_id=WP_000572607.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3523414 3524205 . + . ID=gene3471;Name=SH04_RS17400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17400;old_locus_tag=SH04_17405 NZ_CP010443.1 Protein Homology CDS 3523414 3524205 . + 0 ID=cds3384;Parent=gene3471;Dbxref=Genbank:WP_000611977.1;Name=WP_000611977.1;gbkey=CDS;product=alpha-amylase;protein_id=WP_000611977.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3524344 3524616 . + . ID=gene3472;Name=SH04_RS17405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17405;old_locus_tag=SH04_17410 NZ_CP010443.1 Protein Homology CDS 3524344 3524616 . + 0 ID=cds3385;Parent=gene3472;Dbxref=Genbank:WP_001326686.1;Name=WP_001326686.1;gbkey=CDS;product=alpha-amylase;protein_id=WP_001326686.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3524952 3525929 . + . ID=gene3473;Name=SH04_RS17410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17410;old_locus_tag=SH04_17415 NZ_CP010443.1 Protein Homology CDS 3524952 3525929 . + 0 ID=cds3386;Parent=gene3473;Dbxref=Genbank:WP_000993126.1;Name=WP_000993126.1;Note=in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP%3B the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases%3B forms homotetramers in solution;gbkey=CDS;product=protein CsiD;protein_id=WP_000993126.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3525949 3527217 . + . ID=gene3474;Name=SH04_RS17415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17415;old_locus_tag=SH04_17420 NZ_CP010443.1 Protein Homology CDS 3525949 3527217 . + 0 ID=cds3387;Parent=gene3474;Dbxref=Genbank:WP_000271909.1;Name=WP_000271909.1;Note=catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate;gbkey=CDS;product=L-2-hydroxyglutarate oxidase LhgO;protein_id=WP_000271909.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3527240 3528688 . + . ID=gene3475;Name=gabD;gbkey=Gene;gene=gabD;gene_biotype=protein_coding;locus_tag=SH04_RS17420;old_locus_tag=SH04_17425 NZ_CP010443.1 Protein Homology CDS 3527240 3528688 . + 0 ID=cds3388;Parent=gene3475;Dbxref=Genbank:WP_000772831.1;Name=WP_000772831.1;Note=catalyzes the formation of succinate from succinate semialdehyde%3B NADP dependent;gbkey=CDS;gene=gabD;product=succinate-semialdehyde dehydrogenase [NADP+];protein_id=WP_000772831.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3528702 3529982 . + . ID=gene3476;Name=SH04_RS17425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17425;old_locus_tag=SH04_17430 NZ_CP010443.1 Protein Homology CDS 3528702 3529982 . + 0 ID=cds3389;Parent=gene3476;Dbxref=Genbank:WP_001087611.1;Name=WP_001087611.1;gbkey=CDS;product=4-aminobutyrate aminotransferase GabT;protein_id=WP_001087611.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3530220 3531620 . + . ID=gene3477;Name=SH04_RS17430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17430;old_locus_tag=SH04_17435 NZ_CP010443.1 Protein Homology CDS 3530220 3531620 . + 0 ID=cds3390;Parent=gene3477;Dbxref=Genbank:WP_001295173.1;Name=WP_001295173.1;gbkey=CDS;product=GABA permease;protein_id=WP_001295173.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3531641 3532303 . + . ID=gene3478;Name=SH04_RS17435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17435;old_locus_tag=SH04_17440 NZ_CP010443.1 Protein Homology CDS 3531641 3532303 . + 0 ID=cds3391;Parent=gene3478;Dbxref=Genbank:WP_000156811.1;Name=WP_000156811.1;Note=regulator of gab gene expression;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000156811.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3532304 3532753 . - . ID=gene3479;Name=SH04_RS17440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17440;old_locus_tag=SH04_17445 NZ_CP010443.1 Protein Homology CDS 3532304 3532753 . - 0 ID=cds3392;Parent=gene3479;Dbxref=Genbank:WP_000522415.1;Name=WP_000522415.1;gbkey=CDS;product=peptidoglycan-binding protein LysM;protein_id=WP_000522415.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3532837 3532995 . - . ID=gene3480;Name=SH04_RS17445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17445;old_locus_tag=SH04_17450 NZ_CP010443.1 Protein Homology CDS 3532837 3532995 . - 0 ID=cds3393;Parent=gene3480;Dbxref=Genbank:WP_000508177.1;Name=WP_000508177.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000508177.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3533178 3533477 . + . ID=gene3481;Name=SH04_RS17450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17450;old_locus_tag=SH04_17455 NZ_CP010443.1 Protein Homology CDS 3533178 3533477 . + 0 ID=cds3394;Parent=gene3481;Dbxref=Genbank:WP_000137280.1;Name=WP_000137280.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000137280.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3533487 3534011 . + . ID=gene3482;Name=SH04_RS17455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17455;old_locus_tag=SH04_17460 NZ_CP010443.1 Protein Homology CDS 3533487 3534011 . + 0 ID=cds3395;Parent=gene3482;Dbxref=Genbank:WP_001229442.1;Name=WP_001229442.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001229442.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3534058 3534462 . - . ID=gene3483;Name=SH04_RS17460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17460;old_locus_tag=SH04_17465 NZ_CP010443.1 Protein Homology CDS 3534058 3534462 . - 0 ID=cds3396;Parent=gene3483;Dbxref=Genbank:WP_000115383.1;Name=WP_000115383.1;gbkey=CDS;product=DNA-binding protein StpA;protein_id=WP_000115383.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3535131 3535580 . + . ID=gene3484;Name=SH04_RS17465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17465;old_locus_tag=SH04_17470 NZ_CP010443.1 Protein Homology CDS 3535131 3535580 . + 0 ID=cds3397;Parent=gene3484;Dbxref=Genbank:WP_000492656.1;Name=WP_000492656.1;gbkey=CDS;product=L-alanine exporter AlaE;protein_id=WP_000492656.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3535617 3535961 . - . ID=gene3485;Name=SH04_RS17470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17470;old_locus_tag=SH04_17475 NZ_CP010443.1 Protein Homology CDS 3535617 3535961 . - 0 ID=cds3398;Parent=gene3485;Dbxref=Genbank:WP_000281320.1;Name=WP_000281320.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000281320.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3536113 3536442 . + . ID=gene3486;Name=SH04_RS17475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17475;old_locus_tag=SH04_17480 NZ_CP010443.1 Protein Homology CDS 3536113 3536442 . + 0 ID=cds3399;Parent=gene3486;Dbxref=Genbank:WP_001295174.1;Name=WP_001295174.1;gbkey=CDS;product=DUF883 domain-containing protein;protein_id=WP_001295174.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3536690 3536935 . + . ID=gene3487;Name=SH04_RS17480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17480;old_locus_tag=SH04_17485 NZ_CP010443.1 Protein Homology CDS 3536690 3536935 . + 0 ID=cds3400;Parent=gene3487;Dbxref=Genbank:WP_001223227.1;Name=WP_001223227.1;gbkey=CDS;product=glutaredoxin;protein_id=WP_001223227.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3536932 3537342 . + . ID=gene3488;Name=nrdI;gbkey=Gene;gene=nrdI;gene_biotype=protein_coding;locus_tag=SH04_RS17485;old_locus_tag=SH04_17490 NZ_CP010443.1 Protein Homology CDS 3536932 3537342 . + 0 ID=cds3401;Parent=gene3488;Dbxref=Genbank:WP_000080947.1;Name=WP_000080947.1;Note=in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF;gbkey=CDS;gene=nrdI;product=protein NrdI;protein_id=WP_000080947.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3537315 3539459 . + . ID=gene3489;Name=SH04_RS17490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17490;old_locus_tag=SH04_17495 NZ_CP010443.1 Protein Homology CDS 3537315 3539459 . + 0 ID=cds3402;Parent=gene3489;Dbxref=Genbank:WP_000246534.1;Name=WP_000246534.1;gbkey=CDS;product=ribonucleoside-diphosphate reductase 2 subunit alpha;protein_id=WP_000246534.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3539469 3540428 . + . ID=gene3490;Name=SH04_RS17495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17495;old_locus_tag=SH04_17500 NZ_CP010443.1 Protein Homology CDS 3539469 3540428 . + 0 ID=cds3403;Parent=gene3490;Dbxref=Genbank:WP_000777963.1;Name=WP_000777963.1;Note=B2 or R2 protein%3B type 1b enzyme%3B catalyzes the rate-limiting step in dNTP synthesis%3B converts nucleotides to deoxynucleotides%3B forms a homodimer and then a multimeric complex with NrdE;gbkey=CDS;product=ribonucleotide-diphosphate reductase subunit beta;protein_id=WP_000777963.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3540782 3541984 . + . ID=gene3491;Name=SH04_RS17500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17500;old_locus_tag=SH04_17505 NZ_CP010443.1 Protein Homology CDS 3540782 3541984 . + 0 ID=cds3404;Parent=gene3491;Dbxref=Genbank:WP_000985494.1;Name=WP_000985494.1;Note=with ProWX is involved in the high-affinity uptake of glycine betaine;gbkey=CDS;product=glycine/betaine ABC transporter ATP-binding protein;protein_id=WP_000985494.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3541977 3543041 . + . ID=gene3492;Name=SH04_RS17505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17505;old_locus_tag=SH04_17510 NZ_CP010443.1 Protein Homology CDS 3541977 3543041 . + 0 ID=cds3405;Parent=gene3492;Dbxref=Genbank:WP_000774988.1;Name=WP_000774988.1;Note=with ProVX is involved in the high-affinity uptake of glycine betaine;gbkey=CDS;product=glycine/betaine ABC transporter permease;protein_id=WP_000774988.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3543099 3544091 . + . ID=gene3493;Name=proX;gbkey=Gene;gene=proX;gene_biotype=protein_coding;locus_tag=SH04_RS17510;old_locus_tag=SH04_17515 NZ_CP010443.1 Protein Homology CDS 3543099 3544091 . + 0 ID=cds3406;Parent=gene3493;Dbxref=Genbank:WP_001216525.1;Name=WP_001216525.1;Note=with ProVW%2C part of the high-affinity transport system for the osmoprotectant glycine betaine;gbkey=CDS;gene=proX;product=glycine/betaine ABC transporter substrate-binding protein;protein_id=WP_001216525.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3544283 3545460 . + . ID=gene3494;Name=SH04_RS17515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS17515;pseudo=true NZ_CP010443.1 Protein Homology CDS 3544283 3545460 . + 0 ID=cds3407;Parent=gene3494;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transporter;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 3545584 3546321 . + . ID=gene3495;Name=SH04_RS17520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17520;old_locus_tag=SH04_17525 NZ_CP010443.1 Protein Homology CDS 3545584 3546321 . + 0 ID=cds3408;Parent=gene3495;Dbxref=Genbank:WP_000445651.1;Name=WP_000445651.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000445651.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3546311 3546646 . + . ID=gene3496;Name=SH04_RS17525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17525;old_locus_tag=SH04_17530 NZ_CP010443.1 Protein Homology CDS 3546311 3546646 . + 0 ID=cds3409;Parent=gene3496;Dbxref=Genbank:WP_000119763.1;Name=WP_000119763.1;gbkey=CDS;product=L-valine exporter%2C norvaline resistance protein;protein_id=WP_000119763.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3546737 3547267 . + . ID=gene3497;Name=SH04_RS17530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17530;old_locus_tag=SH04_17535 NZ_CP010443.1 Protein Homology CDS 3546737 3547267 . + 0 ID=cds3410;Parent=gene3497;Dbxref=Genbank:WP_000378442.1;Name=WP_000378442.1;Note=DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux%3B negative regulator of the multidrug operon emrAB;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000378442.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3547394 3548566 . + . ID=gene3498;Name=SH04_RS17535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17535;old_locus_tag=SH04_17540 NZ_CP010443.1 Protein Homology CDS 3547394 3548566 . + 0 ID=cds3411;Parent=gene3498;Dbxref=Genbank:WP_001326681.1;Name=WP_001326681.1;Note=with ErmA and TolC forms a multidrug efflux system;gbkey=CDS;product=multidrug export protein EmrA;protein_id=WP_001326681.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3548583 3550121 . + . ID=gene3499;Name=emrB;gbkey=Gene;gene=emrB;gene_biotype=protein_coding;locus_tag=SH04_RS17540;old_locus_tag=SH04_17545 NZ_CP010443.1 Protein Homology CDS 3548583 3550121 . + 0 ID=cds3412;Parent=gene3499;Dbxref=Genbank:WP_001295176.1;Name=WP_001295176.1;Note=multidrug MFS transporte%3B with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid;gbkey=CDS;gene=emrB;product=multidrug effux MFS transporter subunit EmrB;protein_id=WP_001295176.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3550185 3550700 . - . ID=gene3500;Name=SH04_RS17545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17545;old_locus_tag=SH04_17550 NZ_CP010443.1 Protein Homology CDS 3550185 3550700 . - 0 ID=cds3413;Parent=gene3500;Dbxref=Genbank:WP_001130211.1;Name=WP_001130211.1;Note=catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2;gbkey=CDS;product=S-ribosylhomocysteine lyase;protein_id=WP_001130211.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3550850 3552406 . - . ID=gene3501;Name=SH04_RS17550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17550;old_locus_tag=SH04_17555 NZ_CP010443.1 Protein Homology CDS 3550850 3552406 . - 0 ID=cds3414;Parent=gene3501;Dbxref=Genbank:WP_000611804.1;Name=WP_000611804.1;Note=involved in the first step of glutathione biosynthesis;gbkey=CDS;product=glutamate--cysteine ligase;protein_id=WP_000611804.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3552479 3552907 . - . ID=gene3502;Name=SH04_RS17555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17555;old_locus_tag=SH04_17560 NZ_CP010443.1 Protein Homology CDS 3552479 3552907 . - 0 ID=cds3415;Parent=gene3502;Dbxref=Genbank:WP_001287454.1;Name=WP_001287454.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001287454.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3552904 3553470 . - . ID=gene3503;Name=SH04_RS17560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17560;old_locus_tag=SH04_17565 NZ_CP010443.1 Protein Homology CDS 3552904 3553470 . - 0 ID=cds3416;Parent=gene3503;Dbxref=Genbank:WP_000273290.1;Name=WP_000273290.1;Note=YqaB%3B catalyzes the dephosphorylation of fructose 1-phosphate%2C 6-phosphogluconate and p-nitrophenyl phosphate (pNPP)%3B presents beta-phosphoglucomutase activity at a lower extent;gbkey=CDS;product=fructose-1-phosphate phosphatase YqaB;protein_id=WP_000273290.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3553751 3553827 . - . ID=gene3504;Name=SH04_RS17570;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS17570;old_locus_tag=SH04_17575 NZ_CP010443.1 tRNAscan-SE tRNA 3553751 3553827 . - . ID=rna87;Parent=gene3504;anticodon=(pos:complement(3553791..3553793));gbkey=tRNA;product=tRNA-Arg NZ_CP010443.1 tRNAscan-SE exon 3553751 3553827 . - . ID=id187;Parent=rna87;anticodon=(pos:complement(3553791..3553793));gbkey=tRNA;product=tRNA-Arg NZ_CP010443.1 RefSeq repeat_region 3554025 3554324 . + . ID=id188;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3554026 3554102 . - . ID=gene3505;Name=SH04_RS17575;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS17575;old_locus_tag=SH04_17580 NZ_CP010443.1 tRNAscan-SE tRNA 3554026 3554102 . - . ID=rna88;Parent=gene3505;anticodon=(pos:complement(3554066..3554068));gbkey=tRNA;product=tRNA-Arg NZ_CP010443.1 tRNAscan-SE exon 3554026 3554102 . - . ID=id189;Parent=rna88;anticodon=(pos:complement(3554066..3554068));gbkey=tRNA;product=tRNA-Arg NZ_CP010443.1 RefSeq gene 3554165 3554241 . - . ID=gene3506;Name=SH04_RS17580;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS17580;old_locus_tag=SH04_17585 NZ_CP010443.1 tRNAscan-SE tRNA 3554165 3554241 . - . ID=rna89;Parent=gene3506;anticodon=(pos:complement(3554205..3554207));gbkey=tRNA;product=tRNA-Arg NZ_CP010443.1 tRNAscan-SE exon 3554165 3554241 . - . ID=id190;Parent=rna89;anticodon=(pos:complement(3554205..3554207));gbkey=tRNA;product=tRNA-Arg NZ_CP010443.1 RefSeq gene 3554440 3554516 . - . ID=gene3507;Name=SH04_RS17585;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS17585;old_locus_tag=SH04_17590 NZ_CP010443.1 tRNAscan-SE tRNA 3554440 3554516 . - . ID=rna90;Parent=gene3507;anticodon=(pos:complement(3554480..3554482));gbkey=tRNA;product=tRNA-Arg NZ_CP010443.1 tRNAscan-SE exon 3554440 3554516 . - . ID=id191;Parent=rna90;anticodon=(pos:complement(3554480..3554482));gbkey=tRNA;product=tRNA-Arg NZ_CP010443.1 RefSeq gene 3554520 3554612 . - . ID=gene3508;Name=SH04_RS17590;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS17590;old_locus_tag=SH04_17595 NZ_CP010443.1 tRNAscan-SE tRNA 3554520 3554612 . - . ID=rna91;Parent=gene3508;anticodon=(pos:complement(3554576..3554578));gbkey=tRNA;product=tRNA-Ser NZ_CP010443.1 tRNAscan-SE exon 3554520 3554612 . - . ID=id192;Parent=rna91;anticodon=(pos:complement(3554576..3554578));gbkey=tRNA;product=tRNA-Ser NZ_CP010443.1 RefSeq gene 3554928 3555113 . - . ID=gene3509;Name=SH04_RS17595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17595;old_locus_tag=SH04_17600 NZ_CP010443.1 Protein Homology CDS 3554928 3555113 . - 0 ID=cds3417;Parent=gene3509;Dbxref=Genbank:WP_000906486.1;Name=WP_000906486.1;Note=affects carbohydrate metabolism%3B has regulatory role in many processes;gbkey=CDS;product=pleiotropic regulatory protein for carbon source metabolism;protein_id=WP_000906486.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3555348 3557978 . - . ID=gene3510;Name=SH04_RS17600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17600;old_locus_tag=SH04_17605 NZ_CP010443.1 Protein Homology CDS 3555348 3557978 . - 0 ID=cds3418;Parent=gene3510;Dbxref=Genbank:WP_000047184.1;Name=WP_000047184.1;gbkey=CDS;product=alanine--tRNA ligase;protein_id=WP_000047184.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3557916 3558065 . + . ID=gene3511;Name=SH04_RS17605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17605;old_locus_tag=SH04_17610 NZ_CP010443.1 Protein Homology CDS 3557916 3558065 . + 0 ID=cds3419;Parent=gene3511;Dbxref=Genbank:WP_001307965.1;Name=WP_001307965.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001307965.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3558106 3558606 . - . ID=gene3512;Name=recX;gbkey=Gene;gene=recX;gene_biotype=protein_coding;locus_tag=SH04_RS17610;old_locus_tag=SH04_17615 NZ_CP010443.1 Protein Homology CDS 3558106 3558606 . - 0 ID=cds3420;Parent=gene3512;Dbxref=Genbank:WP_000140508.1;Name=WP_000140508.1;Note=binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities;gbkey=CDS;gene=recX;product=regulatory protein RecX;protein_id=WP_000140508.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3558828 3559012 . - . ID=gene3513;Name=SH04_RS17615;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS17615;pseudo=true NZ_CP010443.1 Protein Homology CDS 3558828 3559012 . - 0 ID=cds3421;Parent=gene3513;exception=annotated by transcript or proteomic data;gbkey=CDS;product=cruciferin;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 3559130 3559276 . - . ID=gene3514;Name=SH04_RS17620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS17620;partial=true;pseudo=true;start_range=.,3559130 NZ_CP010443.1 Protein Homology CDS 3559130 3559276 . - 0 ID=cds3422;Parent=gene3514;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3559130;transl_table=11 NZ_CP010443.1 RefSeq gene 3559330 3559989 . + . ID=gene3515;Name=SH04_RS17625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17625;old_locus_tag=SH04_17635 NZ_CP010443.1 Protein Homology CDS 3559330 3559989 . + 0 ID=cds3423;Parent=gene3515;Dbxref=Genbank:WP_006286297.1;Name=WP_006286297.1;gbkey=CDS;product=chloramphenicol acetyltransferase CAT;protein_id=WP_006286297.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3560155 3560652 . - . ID=gene3516;Name=SH04_RS17630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17630;old_locus_tag=SH04_17640 NZ_CP010443.1 Protein Homology CDS 3560155 3560652 . - 0 ID=cds3424;Parent=gene3516;Dbxref=Genbank:WP_000132231.1;Name=WP_000132231.1;gbkey=CDS;product=nicotinamide-nucleotide amidohydrolase PncC;protein_id=WP_000132231.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3560797 3561882 . - . ID=gene3517;Name=SH04_RS17635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17635;old_locus_tag=SH04_17645 NZ_CP010443.1 Protein Homology CDS 3560797 3561882 . - 0 ID=cds3425;Parent=gene3517;Dbxref=Genbank:WP_001295177.1;Name=WP_001295177.1;Note=membrane-bound lytic murein transglycosylase B%3B catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan;gbkey=CDS;product=murein transglycosylase;protein_id=WP_001295177.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3562138 3562701 . + . ID=gene3518;Name=srlA;gbkey=Gene;gene=srlA;gene_biotype=protein_coding;locus_tag=SH04_RS17640;old_locus_tag=SH04_17650 NZ_CP010443.1 Protein Homology CDS 3562138 3562701 . + 0 ID=cds3426;Parent=gene3518;Dbxref=Genbank:WP_000573321.1;Name=WP_000573321.1;Note=catalyzes the phosphorylation of incoming sugar substrates along with their translocation across the cell membrane%3B the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site;gbkey=CDS;gene=srlA;product=glucitol/sorbitol permease IIC component;protein_id=WP_000573321.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3562698 3563657 . + . ID=gene3519;Name=srlE;gbkey=Gene;gene=srlE;gene_biotype=protein_coding;locus_tag=SH04_RS17645;old_locus_tag=SH04_17655 NZ_CP010443.1 Protein Homology CDS 3562698 3563657 . + 0 ID=cds3427;Parent=gene3519;Dbxref=Genbank:WP_000148878.1;Name=WP_000148878.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B subunit IIB transfers the phosphoryl group to the substrate;gbkey=CDS;gene=srlE;product=glucitol/sorbitol-specific phosphotransferase enzyme IIB component;protein_id=WP_000148878.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3563668 3564039 . + . ID=gene3520;Name=SH04_RS17650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17650;old_locus_tag=SH04_17660 NZ_CP010443.1 Protein Homology CDS 3563668 3564039 . + 0 ID=cds3428;Parent=gene3520;Dbxref=Genbank:WP_000216194.1;Name=WP_000216194.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=glucitol/sorbitol-specific phosphotransferase enzyme IIA component;protein_id=WP_000216194.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3564043 3564822 . + . ID=gene3521;Name=SH04_RS17655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17655;old_locus_tag=SH04_17665 NZ_CP010443.1 Protein Homology CDS 3564043 3564822 . + 0 ID=cds3429;Parent=gene3521;Dbxref=Genbank:WP_001077358.1;Name=WP_001077358.1;Note=catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate;gbkey=CDS;product=sorbitol-6-phosphate 2-dehydrogenase;protein_id=WP_001077358.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3564927 3565286 . + . ID=gene3522;Name=SH04_RS17660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17660;old_locus_tag=SH04_17670 NZ_CP010443.1 Protein Homology CDS 3564927 3565286 . + 0 ID=cds3430;Parent=gene3522;Dbxref=Genbank:WP_000252908.1;Name=WP_000252908.1;Note=regulator for glucitol utilization;gbkey=CDS;product=glucitol operon activator protein;protein_id=WP_000252908.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3565353 3566126 . + . ID=gene3523;Name=srlR;gbkey=Gene;gene=srlR;gene_biotype=protein_coding;gene_synonym=gutR;locus_tag=SH04_RS17665;old_locus_tag=SH04_17675 NZ_CP010443.1 Protein Homology CDS 3565353 3566126 . + 0 ID=cds3431;Parent=gene3523;Dbxref=Genbank:WP_000804550.1;Name=WP_000804550.1;Note=regulates genes involved in glucitol utilization;gbkey=CDS;gene=srlR;product=glucitol operon repressor;protein_id=WP_000804550.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3566119 3567084 . + . ID=gene3524;Name=SH04_RS17670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17670;old_locus_tag=SH04_17680 NZ_CP010443.1 Protein Homology CDS 3566119 3567084 . + 0 ID=cds3432;Parent=gene3524;Dbxref=Genbank:WP_001287420.1;Name=WP_001287420.1;gbkey=CDS;product=arabinose 5-phosphate isomerase GutQ;protein_id=WP_001287420.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3567081 3568595 . - . ID=gene3525;Name=SH04_RS17675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17675;old_locus_tag=SH04_17685 NZ_CP010443.1 Protein Homology CDS 3567081 3568595 . - 0 ID=cds3433;Parent=gene3525;Dbxref=Genbank:WP_000010749.1;Name=WP_000010749.1;Note=Required for the expression of anaerobic nitric oxide (NO) reductase%3B acts as a transcriptional activator for the norVW operon;gbkey=CDS;product=NorR family transcriptional regulator;protein_id=WP_000010749.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3568782 3570221 . + . ID=gene3526;Name=SH04_RS17680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17680;old_locus_tag=SH04_17690 NZ_CP010443.1 Protein Homology CDS 3568782 3570221 . + 0 ID=cds3434;Parent=gene3526;Dbxref=Genbank:WP_000029634.1;Name=WP_000029634.1;Note=detoxifies nitric oxide using NADH;gbkey=CDS;product=anaerobic nitric oxide reductase flavorubredoxin;protein_id=WP_000029634.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3570218 3571351 . + . ID=gene3527;Name=SH04_RS17685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17685;old_locus_tag=SH04_17695 NZ_CP010443.1 Protein Homology CDS 3570218 3571351 . + 0 ID=cds3435;Parent=gene3527;Dbxref=Genbank:WP_000064752.1;Name=WP_000064752.1;gbkey=CDS;product=nitric oxide reductase FlRd-NAD+ reductase;protein_id=WP_000064752.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3571479 3573731 . - . ID=gene3528;Name=SH04_RS17690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17690;old_locus_tag=SH04_17700 NZ_CP010443.1 Protein Homology CDS 3571479 3573731 . - 0 ID=cds3436;Parent=gene3528;Dbxref=Genbank:WP_001107704.1;Name=WP_001107704.1;Note=carbamoyltransferase%3B involved in the formation of the cyanate group of hydrogenase%3B catalyzes the formation of carbamoyladenylate from carbamoylphosphate and then transfers the carbamoyl group to HypE;gbkey=CDS;product=hydrogenase maturation protein HypF;protein_id=WP_001107704.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3573884 3574411 . - . ID=gene3529;Name=SH04_RS17695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17695;old_locus_tag=SH04_17705 NZ_CP010443.1 Protein Homology CDS 3573884 3574411 . - 0 ID=cds3437;Parent=gene3529;Dbxref=Genbank:WP_001078777.1;Name=WP_001078777.1;Note=involved in electron transport from formate to hydrogen;gbkey=CDS;product=electron transporter HydN;protein_id=WP_001078777.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3574560 3575570 . - . ID=gene3530;Name=SH04_RS17700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17700;old_locus_tag=SH04_17710 NZ_CP010443.1 Protein Homology CDS 3574560 3575570 . - 0 ID=cds3438;Parent=gene3530;Dbxref=Genbank:WP_001394680.1;Name=WP_001394680.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001394680.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3575830 3577287 . + . ID=gene3531;Name=SH04_RS17705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17705;old_locus_tag=SH04_17715 NZ_CP010443.1 Protein Homology CDS 3575830 3577287 . + 0 ID=cds3439;Parent=gene3531;Dbxref=Genbank:WP_001107828.1;Name=WP_001107828.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS arbutin-%2C cellobiose-%2C and salicin EIIBC component;protein_id=WP_001107828.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3577296 3578720 . + . ID=gene3532;Name=SH04_RS17710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17710;old_locus_tag=SH04_17720 NZ_CP010443.1 Protein Homology CDS 3577296 3578720 . + 0 ID=cds3440;Parent=gene3532;Dbxref=Genbank:WP_046377556.1;Name=WP_046377556.1;gbkey=CDS;product=6-phospho-beta-glucosidase;protein_id=WP_046377556.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3578879 3579349 . - . ID=gene3533;Name=hycI;gbkey=Gene;gene=hycI;gene_biotype=protein_coding;locus_tag=SH04_RS17715;old_locus_tag=SH04_17725 NZ_CP010443.1 Protein Homology CDS 3578879 3579349 . - 0 ID=cds3441;Parent=gene3533;Dbxref=Genbank:WP_000132961.1;Name=WP_000132961.1;Note=involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE;gbkey=CDS;gene=hycI;product=hydrogenase 3 maturation protease;protein_id=WP_000132961.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3579342 3579752 . - . ID=gene3534;Name=SH04_RS17720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17720;old_locus_tag=SH04_17730 NZ_CP010443.1 Protein Homology CDS 3579342 3579752 . - 0 ID=cds3442;Parent=gene3534;Dbxref=Genbank:WP_001291921.1;Name=WP_001291921.1;Note=required for the maturation of the formate hydrogenlyase complex;gbkey=CDS;product=formate hydrogenlyase maturation protein HycH;protein_id=WP_001291921.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3579749 3580516 . - . ID=gene3535;Name=SH04_RS17725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17725;old_locus_tag=SH04_17735 NZ_CP010443.1 Protein Homology CDS 3579749 3580516 . - 0 ID=cds3443;Parent=gene3535;Dbxref=Genbank:WP_000067392.1;Name=WP_000067392.1;gbkey=CDS;product=formate hydrogenlyase subunit 7;protein_id=WP_000067392.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3580516 3581058 . - . ID=gene3536;Name=SH04_RS17730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17730;old_locus_tag=SH04_17740 NZ_CP010443.1 Protein Homology CDS 3580516 3581058 . - 0 ID=cds3444;Parent=gene3536;Dbxref=Genbank:WP_000493781.1;Name=WP_000493781.1;Note=electron transfer protein for hydrogenase-3%3B the formate hydrogenlyase complex comprises of a formate dehydrogenase%2C unidentified electron carriers and hydrogenase-3%3B in this non-energy conserving pathway%2C molecular hydrogen and carbodioxide are released from formate;gbkey=CDS;product=formate hydrogenlyase subunit 6;protein_id=WP_000493781.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3581068 3582777 . - . ID=gene3537;Name=hycE;gbkey=Gene;gene=hycE;gene_biotype=protein_coding;locus_tag=SH04_RS17735;old_locus_tag=SH04_17745 NZ_CP010443.1 Protein Homology CDS 3581068 3582777 . - 0 ID=cds3445;Parent=gene3537;Dbxref=Genbank:WP_001288122.1;Name=WP_001288122.1;Note=formate hydrogenlyase subunit 5%3B HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide;gbkey=CDS;gene=hycE;product=formate hydrogenlyase subunit 5;protein_id=WP_001288122.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3582795 3583718 . - . ID=gene3538;Name=hycD;gbkey=Gene;gene=hycD;gene_biotype=protein_coding;locus_tag=SH04_RS17740;old_locus_tag=SH04_17750 NZ_CP010443.1 Protein Homology CDS 3582795 3583718 . - 0 ID=cds3446;Parent=gene3538;Dbxref=Genbank:WP_000115224.1;Name=WP_000115224.1;Note=formate hydrogenlyase subunit 4%3B HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide;gbkey=CDS;gene=hycD;product=formate hydrogenlyase subunit 4;protein_id=WP_000115224.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3583721 3585547 . - . ID=gene3539;Name=SH04_RS17745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17745;old_locus_tag=SH04_17755 NZ_CP010443.1 Protein Homology CDS 3583721 3585547 . - 0 ID=cds3447;Parent=gene3539;Dbxref=Genbank:WP_001274396.1;Name=WP_001274396.1;Note=catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen%3B formate hydrogenlyase comprises of a formate dehydrogenase%2C unidentified electron carriers and a hydrogenase (subunit 3);gbkey=CDS;product=formate hydrogenlyase subunit 3;protein_id=WP_001274396.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3585544 3586155 . - . ID=gene3540;Name=SH04_RS17750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17750;old_locus_tag=SH04_17760 NZ_CP010443.1 Protein Homology CDS 3585544 3586155 . - 0 ID=cds3448;Parent=gene3540;Dbxref=Genbank:WP_001079186.1;Name=WP_001079186.1;gbkey=CDS;product=formate hydrogenlyase subunit 2;protein_id=WP_001079186.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3586056 3586364 . + . ID=gene3541;Name=SH04_RS17755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17755;old_locus_tag=SH04_17765 NZ_CP010443.1 Protein Homology CDS 3586056 3586364 . + 0 ID=cds3449;Parent=gene3541;Dbxref=Genbank:WP_001443036.1;Name=WP_001443036.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001443036.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3586280 3586741 . - . ID=gene3542;Name=SH04_RS17760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17760;old_locus_tag=SH04_17770 NZ_CP010443.1 Protein Homology CDS 3586280 3586741 . - 0 ID=cds3450;Parent=gene3542;Dbxref=Genbank:WP_000158056.1;Name=WP_000158056.1;Note=regulates several genes involved in the formate hydrogenlyase system%3B seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon;gbkey=CDS;product=formate hydrogenlyase regulatory protein HycA;protein_id=WP_000158056.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3586953 3587303 . + . ID=gene3543;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=SH04_RS17765;old_locus_tag=SH04_17775 NZ_CP010443.1 Protein Homology CDS 3586953 3587303 . + 0 ID=cds3451;Parent=gene3543;Dbxref=Genbank:WP_001299100.1;Name=WP_001299100.1;Note=plays a role in hydrogenase nickel cofactor insertion;gbkey=CDS;gene=hypA;product=protein HypA;protein_id=WP_001299100.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3587307 3588179 . + . ID=gene3544;Name=SH04_RS17770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17770;old_locus_tag=SH04_17780 NZ_CP010443.1 Protein Homology CDS 3587307 3588179 . + 0 ID=cds3452;Parent=gene3544;Dbxref=Genbank:WP_000337665.1;Name=WP_000337665.1;Note=GTP hydrolase involved in nickel liganding into hydrogenases;gbkey=CDS;product=hydrogenase isoenzymes nickel incorporation protein HypB;protein_id=WP_000337665.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3588170 3588442 . + . ID=gene3545;Name=SH04_RS17775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17775;old_locus_tag=SH04_17785 NZ_CP010443.1 Protein Homology CDS 3588170 3588442 . + 0 ID=cds3453;Parent=gene3545;Dbxref=Genbank:WP_000334881.1;Name=WP_000334881.1;Note=HypC%3B accessory protein necessary for maturation of the hydrogenase isoforms 1%2C 2 and 3%3B forms a complex with HypD%2C HypE%2C and HypF proteins%2C which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase;gbkey=CDS;product=hydrogenase assembly protein HypC;protein_id=WP_000334881.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3588442 3589563 . + . ID=gene3546;Name=SH04_RS17780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17780;old_locus_tag=SH04_17790 NZ_CP010443.1 Protein Homology CDS 3588442 3589563 . + 0 ID=cds3454;Parent=gene3546;Dbxref=Genbank:WP_001212985.1;Name=WP_001212985.1;Note=necessary for the synthesis of all three hydrogenase isoenzymes;gbkey=CDS;product=hydrogenase isoenzymes formation protein HypD;protein_id=WP_001212985.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3589560 3590570 . + . ID=gene3547;Name=SH04_RS17785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17785;old_locus_tag=SH04_17795 NZ_CP010443.1 Protein Homology CDS 3589560 3590570 . + 0 ID=cds3455;Parent=gene3547;Dbxref=Genbank:WP_001059922.1;Name=WP_001059922.1;Note=hydrogenase isoenzymes formation protein%3B involved in the formation of the cyanate group of the large subunit of the hydrogenase%3B catalyzes the formation of thiocyanate from thiocarbamate;gbkey=CDS;product=hydrogenase isoenzymes formation protein HypE;protein_id=WP_001059922.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3590644 3592722 . + . ID=gene3548;Name=SH04_RS17790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17790;old_locus_tag=SH04_17800 NZ_CP010443.1 Protein Homology CDS 3590644 3592722 . + 0 ID=cds3456;Parent=gene3548;Dbxref=Genbank:WP_001301332.1;Name=WP_001301332.1;Note=regulates the expression of formate dehydrogenase H and hydrogenase-3 structural genes;gbkey=CDS;product=formate hydrogenlyase transcriptional activator;protein_id=WP_001301332.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3592759 3593112 . - . ID=gene3549;Name=SH04_RS17795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17795;old_locus_tag=SH04_17805 NZ_CP010443.1 Protein Homology CDS 3592759 3593112 . - 0 ID=cds3457;Parent=gene3549;Dbxref=Genbank:WP_000015497.1;Name=WP_000015497.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000015497.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3593399 3595960 . + . ID=gene3550;Name=SH04_RS17800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17800;old_locus_tag=SH04_17810 NZ_CP010443.1 Protein Homology CDS 3593399 3595960 . + 0 ID=cds3458;Parent=gene3550;Dbxref=Genbank:WP_001272928.1;Name=WP_001272928.1;Note=This protein performs the mismatch recognition step during the DNA repair process;gbkey=CDS;product=DNA mismatch repair protein MutS;protein_id=WP_001272928.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3596066 3596722 . + . ID=gene3551;Name=SH04_RS17805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17805;old_locus_tag=SH04_17815 NZ_CP010443.1 Protein Homology CDS 3596066 3596722 . + 0 ID=cds3459;Parent=gene3551;Dbxref=Genbank:WP_001141337.1;Name=WP_001141337.1;gbkey=CDS;product=Serine/threonine-protein phosphatase 2;protein_id=WP_001141337.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3596773 3597540 . - . ID=gene3552;Name=SH04_RS17810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17810;old_locus_tag=SH04_17820 NZ_CP010443.1 Protein Homology CDS 3596773 3597540 . - 0 ID=cds3460;Parent=gene3552;Dbxref=Genbank:WP_001300386.1;Name=WP_001300386.1;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_001300386.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3597736 3598644 . + . ID=gene3553;Name=SH04_RS17815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17815;old_locus_tag=SH04_17825 NZ_CP010443.1 Protein Homology CDS 3597736 3598644 . + 0 ID=cds3461;Parent=gene3553;Dbxref=Genbank:WP_000848004.1;Name=WP_000848004.1;gbkey=CDS;product=dehydrogenase;protein_id=WP_000848004.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3598641 3599807 . + . ID=gene3554;Name=SH04_RS17820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17820;old_locus_tag=SH04_17830 NZ_CP010443.1 Protein Homology CDS 3598641 3599807 . + 0 ID=cds3462;Parent=gene3554;Dbxref=Genbank:WP_001393459.1;Name=WP_001393459.1;gbkey=CDS;product=DUF1537 domain-containing protein;protein_id=WP_001393459.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3599899 3600537 . + . ID=gene3555;Name=SH04_RS17825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17825;old_locus_tag=SH04_17835 NZ_CP010443.1 Protein Homology CDS 3599899 3600537 . + 0 ID=cds3463;Parent=gene3555;Dbxref=Genbank:WP_001278991.1;Name=WP_001278991.1;gbkey=CDS;product=aldolase;protein_id=WP_001278991.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3600542 3601318 . + . ID=gene3556;Name=SH04_RS17830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17830;old_locus_tag=SH04_17840 NZ_CP010443.1 Protein Homology CDS 3600542 3601318 . + 0 ID=cds3464;Parent=gene3556;Dbxref=Genbank:WP_001136934.1;Name=WP_001136934.1;gbkey=CDS;product=hydroxypyruvate isomerase;protein_id=WP_001136934.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3601407 3602771 . + . ID=gene3557;Name=SH04_RS17835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17835;old_locus_tag=SH04_17845 NZ_CP010443.1 Protein Homology CDS 3601407 3602771 . + 0 ID=cds3465;Parent=gene3557;Dbxref=Genbank:WP_000104441.1;Name=WP_000104441.1;Note=member of the Gnt family of gluconate transporters%3B not involved in gluconate transport%3B unknown function;gbkey=CDS;product=permease;protein_id=WP_000104441.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3602865 3603857 . - . ID=gene3558;Name=SH04_RS17840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17840;old_locus_tag=SH04_17850 NZ_CP010443.1 Protein Homology CDS 3602865 3603857 . - 0 ID=cds3466;Parent=gene3558;Dbxref=Genbank:WP_000081588.1;Name=WP_000081588.1;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor controls a regulon of genes required for protection against external stresses;gbkey=CDS;product=RNA polymerase sigma factor RpoS;protein_id=WP_000081588.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3603920 3605059 . - . ID=gene3559;Name=nlpD;gbkey=Gene;gene=nlpD;gene_biotype=protein_coding;locus_tag=SH04_RS17845;old_locus_tag=SH04_17855 NZ_CP010443.1 Protein Homology CDS 3603920 3605059 . - 0 ID=cds3467;Parent=gene3559;Dbxref=Genbank:WP_001272592.1;Name=WP_001272592.1;Note=outer membrane lipoprotein involved in stationary-phase cell survival%3B similar to LppB virulence determinant from Haemophilus somnus;gbkey=CDS;gene=nlpD;product=murein hydrolase activator NlpD;protein_id=WP_001272592.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3605199 3605825 . - . ID=gene3560;Name=pcm;gbkey=Gene;gene=pcm;gene_biotype=protein_coding;locus_tag=SH04_RS17850;old_locus_tag=SH04_17860 NZ_CP010443.1 Protein Homology CDS 3605199 3605825 . - 0 ID=cds3468;Parent=gene3560;Dbxref=Genbank:WP_000254708.1;Name=WP_000254708.1;Note=catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins;gbkey=CDS;gene=pcm;product=protein-L-isoaspartate O-methyltransferase;protein_id=WP_000254708.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3605819 3606580 . - . ID=gene3561;Name=surE;gbkey=Gene;gene=surE;gene_biotype=protein_coding;locus_tag=SH04_RS17855;old_locus_tag=SH04_17865 NZ_CP010443.1 Protein Homology CDS 3605819 3606580 . - 0 ID=cds3469;Parent=gene3561;Dbxref=Genbank:WP_001295182.1;Name=WP_001295182.1;Note=broad specificity 5'(3')-nucleotidase and polyphosphatase;gbkey=CDS;gene=surE;product=5'/3'-nucleotidase SurE;protein_id=WP_001295182.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3606561 3607610 . - . ID=gene3562;Name=truD;gbkey=Gene;gene=truD;gene_biotype=protein_coding;gene_synonym=ygbO;locus_tag=SH04_RS17860;old_locus_tag=SH04_17870 NZ_CP010443.1 Protein Homology CDS 3606561 3607610 . - 0 ID=cds3470;Parent=gene3562;Dbxref=Genbank:WP_000568943.1;Name=WP_000568943.1;Note=catalyzes the modification of U13 in tRNA(Glu);gbkey=CDS;gene=truD;product=tRNA pseudouridine synthase D;protein_id=WP_000568943.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3607607 3608086 . - . ID=gene3563;Name=ispF;gbkey=Gene;gene=ispF;gene_biotype=protein_coding;locus_tag=SH04_RS17865;old_locus_tag=SH04_17875 NZ_CP010443.1 Protein Homology CDS 3607607 3608086 . - 0 ID=cds3471;Parent=gene3563;Dbxref=Genbank:WP_001219242.1;Name=WP_001219242.1;Note=catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate;gbkey=CDS;gene=ispF;product=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=WP_001219242.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3608086 3608796 . - . ID=gene3564;Name=SH04_RS17870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17870;old_locus_tag=SH04_17880 NZ_CP010443.1 Protein Homology CDS 3608086 3608796 . - 0 ID=cds3472;Parent=gene3564;Dbxref=Genbank:WP_000246138.1;Name=WP_000246138.1;gbkey=CDS;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;protein_id=WP_000246138.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3608815 3609126 . - . ID=gene3565;Name=ftsB;gbkey=Gene;gene=ftsB;gene_biotype=protein_coding;locus_tag=SH04_RS17875;old_locus_tag=SH04_17885 NZ_CP010443.1 Protein Homology CDS 3608815 3609126 . - 0 ID=cds3473;Parent=gene3565;Dbxref=Genbank:WP_000517476.1;Name=WP_000517476.1;Note=forms a complex with FtsL and FtsQ%3B colocalizes to the septal region of the dividing cell%3B membrane protein;gbkey=CDS;gene=ftsB;product=cell division protein FtsB;protein_id=WP_000517476.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3609320 3609643 . - . ID=gene3566;Name=SH04_RS17880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17880;old_locus_tag=SH04_17890 NZ_CP010443.1 Protein Homology CDS 3609320 3609643 . - 0 ID=cds3474;Parent=gene3566;Dbxref=Genbank:WP_001246104.1;Name=WP_001246104.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001246104.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3609693 3610298 . - . ID=gene3567;Name=SH04_RS17885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17885;old_locus_tag=SH04_17895 NZ_CP010443.1 Protein Homology CDS 3609693 3610298 . - 0 ID=cds3475;Parent=gene3567;Dbxref=Genbank:WP_001173673.1;Name=WP_001173673.1;Note=converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate%3B in Escherichia coli this enzyme functions in cysteine biosynthesis;gbkey=CDS;product=adenylyl-sulfate kinase;protein_id=WP_001173673.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3610298 3611725 . - . ID=gene3568;Name=cysN;gbkey=Gene;gene=cysN;gene_biotype=protein_coding;locus_tag=SH04_RS17890;old_locus_tag=SH04_17900 NZ_CP010443.1 Protein Homology CDS 3610298 3611725 . - 0 ID=cds3476;Parent=gene3568;Dbxref=Genbank:WP_001090361.1;Name=WP_001090361.1;Note=may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate%3B in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step%3B forms a heterodimer with CysD%3B part of the GTP-binding elongation factor family CysN/NodQ;gbkey=CDS;gene=cysN;product=sulfate adenylyltransferase subunit 1;protein_id=WP_001090361.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3611727 3612635 . - . ID=gene3569;Name=SH04_RS17895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17895;old_locus_tag=SH04_17905 NZ_CP010443.1 Protein Homology CDS 3611727 3612635 . - 0 ID=cds3477;Parent=gene3569;Dbxref=Genbank:WP_000372108.1;Name=WP_000372108.1;Note=with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP;gbkey=CDS;product=sulfate adenylyltransferase subunit 2;protein_id=WP_000372108.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3612887 3613924 . + . ID=gene3570;Name=SH04_RS17900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17900;old_locus_tag=SH04_17910 NZ_CP010443.1 Protein Homology CDS 3612887 3613924 . + 0 ID=cds3478;Parent=gene3570;Dbxref=Genbank:WP_000490428.1;Name=WP_000490428.1;Note=catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3;gbkey=CDS;product=alkaline phosphatase isozyme conversion protein;protein_id=WP_000490428.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 3614007 3614769 . + . ID=id193;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3614875 3615159 . - . ID=gene3571;Name=SH04_RS17905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17905;old_locus_tag=SH04_17915 NZ_CP010443.1 Protein Homology CDS 3614875 3615159 . - 0 ID=cds3479;Parent=gene3571;Dbxref=Genbank:WP_001381369.1;Name=WP_001381369.1;gbkey=CDS;product=CRISPR-associated endonuclease Cas2;protein_id=WP_001381369.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3615161 3616078 . - . ID=gene3572;Name=SH04_RS17910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17910;old_locus_tag=SH04_17920 NZ_CP010443.1 Protein Homology CDS 3615161 3616078 . - 0 ID=cds3480;Parent=gene3572;Dbxref=Genbank:WP_000220066.1;Name=WP_000220066.1;gbkey=CDS;product=subtype I-E CRISPR-associated endonuclease Cas1;protein_id=WP_000220066.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3616094 3616693 . - . ID=gene3573;Name=SH04_RS17915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17915;old_locus_tag=SH04_17925 NZ_CP010443.1 Protein Homology CDS 3616094 3616693 . - 0 ID=cds3481;Parent=gene3573;Dbxref=Genbank:WP_000281400.1;Name=WP_000281400.1;gbkey=CDS;product=CRISPR system Cascade subunit CasE;protein_id=WP_000281400.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3616680 3617354 . - . ID=gene3574;Name=SH04_RS17920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17920;old_locus_tag=SH04_17930 NZ_CP010443.1 Protein Homology CDS 3616680 3617354 . - 0 ID=cds3482;Parent=gene3574;Dbxref=Genbank:WP_001334996.1;Name=WP_001334996.1;gbkey=CDS;product=CRISPR system Cascade subunit CasD;protein_id=WP_001334996.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3617357 3618448 . - . ID=gene3575;Name=SH04_RS17925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17925;old_locus_tag=SH04_17935 NZ_CP010443.1 Protein Homology CDS 3617357 3618448 . - 0 ID=cds3483;Parent=gene3575;Dbxref=Genbank:WP_000064450.1;Name=WP_000064450.1;gbkey=CDS;product=CRISPR system Cascade subunit CasC;protein_id=WP_000064450.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3618461 3618943 . - . ID=gene3576;Name=SH04_RS17930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17930;old_locus_tag=SH04_17940 NZ_CP010443.1 Protein Homology CDS 3618461 3618943 . - 0 ID=cds3484;Parent=gene3576;Dbxref=Genbank:WP_000752800.1;Name=WP_000752800.1;gbkey=CDS;product=CRISPR system Cascade subunit CasB;protein_id=WP_000752800.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3618936 3620444 . - . ID=gene3577;Name=SH04_RS17935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17935;old_locus_tag=SH04_17945 NZ_CP010443.1 Protein Homology CDS 3618936 3620444 . - 0 ID=cds3485;Parent=gene3577;Dbxref=Genbank:WP_001050401.1;Name=WP_001050401.1;Note=CRISP RNA (crRNA) containing protein;gbkey=CDS;product=CRISPR system Cascade subunit CasA;protein_id=WP_001050401.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3620859 3623525 . - . ID=gene3578;Name=SH04_RS17940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17940;old_locus_tag=SH04_17950 NZ_CP010443.1 Protein Homology CDS 3620859 3623525 . - 0 ID=cds3486;Parent=gene3578;Dbxref=Genbank:WP_000433152.1;Name=WP_000433152.1;Note=required for the activity of the Cascade antiviral complex;gbkey=CDS;product=CRISPR-associated endonuclease/helicase Cas3;protein_id=WP_000433152.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3623884 3624618 . - . ID=gene3579;Name=SH04_RS17945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17945;old_locus_tag=SH04_17955 NZ_CP010443.1 Protein Homology CDS 3623884 3624618 . - 0 ID=cds3487;Parent=gene3579;Dbxref=Genbank:WP_000039850.1;Name=WP_000039850.1;Note=catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite;gbkey=CDS;product=phosphoadenosine phosphosulfate reductase;protein_id=WP_000039850.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3624693 3626405 . - . ID=gene3580;Name=SH04_RS17950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17950;old_locus_tag=SH04_17960 NZ_CP010443.1 Protein Homology CDS 3624693 3626405 . - 0 ID=cds3488;Parent=gene3580;Dbxref=Genbank:WP_001290679.1;Name=WP_001290679.1;Note=hemoprotein%3B NADPH dependent%3B with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide;gbkey=CDS;product=sulfite reductase subunit beta;protein_id=WP_001290679.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3626405 3628204 . - . ID=gene3581;Name=cysJ;gbkey=Gene;gene=cysJ;gene_biotype=protein_coding;locus_tag=SH04_RS17955;old_locus_tag=SH04_17965 NZ_CP010443.1 Protein Homology CDS 3626405 3628204 . - 0 ID=cds3489;Parent=gene3581;Dbxref=Genbank:WP_000211913.1;Name=WP_000211913.1;Note=catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate%3B a flavoprotein with flavin reductase activity;gbkey=CDS;gene=cysJ;product=sulfite reductase subunit alpha;protein_id=WP_000211913.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3628523 3628885 . + . ID=gene3582;Name=SH04_RS17960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17960;old_locus_tag=SH04_17970 NZ_CP010443.1 Protein Homology CDS 3628523 3628885 . + 0 ID=cds3490;Parent=gene3582;Dbxref=Genbank:WP_000108294.1;Name=WP_000108294.1;gbkey=CDS;product=6-carboxy-5%2C6%2C7%2C8-tetrahydropterin synthase;protein_id=WP_000108294.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3628963 3630234 . + . ID=gene3583;Name=SH04_RS17965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17965;old_locus_tag=SH04_17975 NZ_CP010443.1 Protein Homology CDS 3628963 3630234 . + 0 ID=cds3491;Parent=gene3583;Dbxref=Genbank:WP_001301334.1;Name=WP_001301334.1;gbkey=CDS;product=electron transfer flavoprotein-quinone oxidoreductase;protein_id=WP_001301334.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3630225 3630485 . + . ID=gene3584;Name=SH04_RS17970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17970;old_locus_tag=SH04_17980 NZ_CP010443.1 Protein Homology CDS 3630225 3630485 . + 0 ID=cds3492;Parent=gene3584;Dbxref=Genbank:WP_000109529.1;Name=WP_000109529.1;gbkey=CDS;product=ferredoxin-like protein YgcO;protein_id=WP_000109529.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3630502 3631077 . + . ID=gene3585;Name=SH04_RS17975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17975;old_locus_tag=SH04_17985 NZ_CP010443.1 Protein Homology CDS 3630502 3631077 . + 0 ID=cds3493;Parent=gene3585;Dbxref=Genbank:WP_001130266.1;Name=WP_001130266.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001130266.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3631225 3632085 . - . ID=gene3586;Name=SH04_RS17980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17980;old_locus_tag=SH04_17990 NZ_CP010443.1 Protein Homology CDS 3631225 3632085 . - 0 ID=cds3494;Parent=gene3586;Dbxref=Genbank:WP_001299097.1;Name=WP_001299097.1;gbkey=CDS;product=flavoprotein;protein_id=WP_001299097.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3632082 3632861 . - . ID=gene3587;Name=SH04_RS17985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17985;old_locus_tag=SH04_17995 NZ_CP010443.1 Protein Homology CDS 3632082 3632861 . - 0 ID=cds3495;Parent=gene3587;Dbxref=Genbank:WP_001299652.1;Name=WP_001299652.1;gbkey=CDS;product=flavoprotein;protein_id=WP_001299652.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3632839 3634176 . - . ID=gene3588;Name=SH04_RS17990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17990;old_locus_tag=SH04_18000 NZ_CP010443.1 Protein Homology CDS 3632839 3634176 . - 0 ID=cds3496;Parent=gene3588;Dbxref=Genbank:WP_001098105.1;Name=WP_001098105.1;gbkey=CDS;product=metabolite transporter;protein_id=WP_001098105.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3634270 3635724 . - . ID=gene3589;Name=SH04_RS17995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS17995;old_locus_tag=SH04_18005 NZ_CP010443.1 Protein Homology CDS 3634270 3635724 . - 0 ID=cds3497;Parent=gene3589;Dbxref=Genbank:WP_000059307.1;Name=WP_000059307.1;gbkey=CDS;product=FAD-linked oxidoreductase;protein_id=WP_000059307.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3635794 3636579 . - . ID=gene3590;Name=SH04_RS18000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18000;old_locus_tag=SH04_18010 NZ_CP010443.1 Protein Homology CDS 3635794 3636579 . - 0 ID=cds3498;Parent=gene3590;Dbxref=Genbank:WP_000021334.1;Name=WP_000021334.1;gbkey=CDS;product=SDR family oxidoreductase;protein_id=WP_000021334.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3636898 3638175 . + . ID=gene3591;Name=SH04_RS18005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18005;old_locus_tag=SH04_18015 NZ_CP010443.1 Protein Homology CDS 3636898 3638175 . + 0 ID=cds3499;Parent=gene3591;Dbxref=Genbank:WP_001164544.1;Name=WP_001164544.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001164544.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3638202 3639680 . + . ID=gene3592;Name=SH04_RS18010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18010;old_locus_tag=SH04_18020 NZ_CP010443.1 Protein Homology CDS 3638202 3639680 . + 0 ID=cds3500;Parent=gene3592;Dbxref=Genbank:WP_000039688.1;Name=WP_000039688.1;gbkey=CDS;product=kinase;protein_id=WP_000039688.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 3640320 3640713 . + . ID=id194;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3641053 3641724 . - . ID=gene3593;Name=SH04_RS18015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18015;old_locus_tag=SH04_18025 NZ_CP010443.1 Protein Homology CDS 3641053 3641724 . - 0 ID=cds3501;Parent=gene3593;Dbxref=Genbank:WP_001199973.1;Name=WP_001199973.1;gbkey=CDS;product=7-carboxy-7-deazaguanine synthase;protein_id=WP_001199973.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3641863 3642003 . + . ID=gene3594;Name=SH04_RS18020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18020;old_locus_tag=SH04_18030 NZ_CP010443.1 Protein Homology CDS 3641863 3642003 . + 0 ID=cds3502;Parent=gene3594;Dbxref=Genbank:WP_001288228.1;Name=WP_001288228.1;gbkey=CDS;product=membrane stress resistance protein;protein_id=WP_001288228.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3642017 3642889 . + . ID=gene3595;Name=SH04_RS18025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18025;old_locus_tag=SH04_18035 NZ_CP010443.1 Protein Homology CDS 3642017 3642889 . + 0 ID=cds3503;Parent=gene3595;Dbxref=Genbank:WP_001268460.1;Name=WP_001268460.1;gbkey=CDS;product=TPM domain protein phosphatase;protein_id=WP_001268460.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3642949 3644247 . - . ID=gene3596;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=SH04_RS18030;old_locus_tag=SH04_18040 NZ_CP010443.1 Protein Homology CDS 3642949 3644247 . - 0 ID=cds3504;Parent=gene3596;Dbxref=Genbank:WP_000036723.1;Name=WP_000036723.1;Note=catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis;gbkey=CDS;gene=eno;product=enolase;protein_id=WP_000036723.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3644335 3645972 . - . ID=gene3597;Name=pyrG;gbkey=Gene;gene=pyrG;gene_biotype=protein_coding;locus_tag=SH04_RS18035;old_locus_tag=SH04_18045 NZ_CP010443.1 Protein Homology CDS 3644335 3645972 . - 0 ID=cds3505;Parent=gene3597;Dbxref=Genbank:WP_000210878.1;Name=WP_000210878.1;Note=CTP synthase%3B cytidine triphosphate synthetase%3B catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen%3B in Escherichia coli this enzyme forms a homotetramer;gbkey=CDS;gene=pyrG;product=CTP synthase;protein_id=WP_000210878.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3646200 3646991 . - . ID=gene3598;Name=mazG;gbkey=Gene;gene=mazG;gene_biotype=protein_coding;locus_tag=SH04_RS18040;old_locus_tag=SH04_18050 NZ_CP010443.1 Protein Homology CDS 3646200 3646991 . - 0 ID=cds3506;Parent=gene3598;Dbxref=Genbank:WP_001071648.1;Name=WP_001071648.1;Note=functions in degradation of stringent response intracellular messenger ppGpp%3B in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF%3B activity of MazG is inhibited by MazEF in vitro%3B ppGpp inhibits mazEF expression%3B MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation%3B MazG also interacts with the GTPase protein Era;gbkey=CDS;gene=mazG;product=nucleoside triphosphate pyrophosphohydrolase;protein_id=WP_001071648.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3647062 3647397 . - . ID=gene3599;Name=SH04_RS18045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18045;old_locus_tag=SH04_18055 NZ_CP010443.1 Protein Homology CDS 3647062 3647397 . - 0 ID=cds3507;Parent=gene3599;Dbxref=Genbank:WP_000254738.1;Name=WP_000254738.1;Note=ChpA%3B endoribonuclease%3B toxin of the MazF-MazE (ChpA-ChpR) toxin-antitoxin system;gbkey=CDS;product=mRNA interferase MazF;protein_id=WP_000254738.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3647397 3647645 . - . ID=gene3600;Name=SH04_RS18050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18050;old_locus_tag=SH04_18060 NZ_CP010443.1 Protein Homology CDS 3647397 3647645 . - 0 ID=cds3508;Parent=gene3600;Dbxref=Genbank:WP_000581937.1;Name=WP_000581937.1;Note=part of the MazF-MazE toxin-antitoxin system%3B conteracts MazF;gbkey=CDS;product=antitoxin MazE;protein_id=WP_000581937.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3647723 3649957 . - . ID=gene3601;Name=relA;gbkey=Gene;gene=relA;gene_biotype=protein_coding;locus_tag=SH04_RS18055;old_locus_tag=SH04_18065 NZ_CP010443.1 Protein Homology CDS 3647723 3649957 . - 0 ID=cds3509;Parent=gene3601;Dbxref=Genbank:WP_000226815.1;Name=WP_000226815.1;Note=(p)ppGpp synthetase%3B catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP;gbkey=CDS;gene=relA;product=GTP pyrophosphokinase;protein_id=WP_000226815.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3650005 3651306 . - . ID=gene3602;Name=rumA;gbkey=Gene;gene=rumA;gene_biotype=protein_coding;locus_tag=SH04_RS18060;old_locus_tag=SH04_18070 NZ_CP010443.1 Protein Homology CDS 3650005 3651306 . - 0 ID=cds3510;Parent=gene3602;Dbxref=Genbank:WP_000046812.1;Name=WP_000046812.1;Note=in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA%3B binds an iron-sulfur cluster [4Fe-4S];gbkey=CDS;gene=rumA;product=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;protein_id=WP_000046812.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3651363 3654119 . + . ID=gene3603;Name=SH04_RS18065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18065;old_locus_tag=SH04_18075 NZ_CP010443.1 Protein Homology CDS 3651363 3654119 . + 0 ID=cds3511;Parent=gene3603;Dbxref=Genbank:WP_000186450.1;Name=WP_000186450.1;Note=part of the two-component regulatory system with UvrY%3B involved in the regulation of carbon metabolism via the csrA/csrB regulatory system;gbkey=CDS;product=signal transduction histidine kinase;protein_id=WP_000186450.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3654351 3655691 . - . ID=gene3604;Name=gudD;gbkey=Gene;gene=gudD;gene_biotype=protein_coding;locus_tag=SH04_RS18070;old_locus_tag=SH04_18080 NZ_CP010443.1 Protein Homology CDS 3654351 3655691 . - 0 ID=cds3512;Parent=gene3604;Dbxref=Genbank:WP_000098255.1;Name=WP_000098255.1;Note=catalyzes the formation of 5-keto-4-deoxy-D-glucarate from glucarate;gbkey=CDS;gene=gudD;product=glucarate dehydratase;protein_id=WP_000098255.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3655712 3657052 . - . ID=gene3605;Name=SH04_RS18075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18075;old_locus_tag=SH04_18085 NZ_CP010443.1 Protein Homology CDS 3655712 3657052 . - 0 ID=cds3513;Parent=gene3605;Dbxref=Genbank:WP_000235391.1;Name=WP_000235391.1;gbkey=CDS;product=glucarate dehydratase-related protein;protein_id=WP_000235391.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3657054 3658406 . - . ID=gene3606;Name=SH04_RS18080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18080;old_locus_tag=SH04_18090 NZ_CP010443.1 Protein Homology CDS 3657054 3658406 . - 0 ID=cds3514;Parent=gene3606;Dbxref=Genbank:WP_000097072.1;Name=WP_000097072.1;gbkey=CDS;product=glucarate transporter;protein_id=WP_000097072.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3658841 3659290 . - . ID=gene3607;Name=SH04_RS18085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18085;old_locus_tag=SH04_18095 NZ_CP010443.1 Protein Homology CDS 3658841 3659290 . - 0 ID=cds3515;Parent=gene3607;Dbxref=Genbank:WP_000807753.1;Name=WP_000807753.1;Note=An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group;gbkey=CDS;product=flavodoxin;protein_id=WP_000807753.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3659308 3660090 . - . ID=gene3608;Name=SH04_RS18090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18090;old_locus_tag=SH04_18100 NZ_CP010443.1 Protein Homology CDS 3659308 3660090 . - 0 ID=cds3516;Parent=gene3608;Dbxref=Genbank:WP_000890001.1;Name=WP_000890001.1;Note=catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp;gbkey=CDS;product=tRNA pseudouridine synthase C;protein_id=WP_000890001.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3660090 3660419 . - . ID=gene3609;Name=SH04_RS18095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18095;old_locus_tag=SH04_18105 NZ_CP010443.1 Protein Homology CDS 3660090 3660419 . - 0 ID=cds3517;Parent=gene3609;Dbxref=Genbank:WP_000206990.1;Name=WP_000206990.1;gbkey=CDS;product=DUF446 domain-containing protein;protein_id=WP_000206990.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3660666 3660791 . - . ID=gene3610;Name=SH04_RS18100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18100 NZ_CP010443.1 Protein Homology CDS 3660666 3660791 . - 0 ID=cds3518;Parent=gene3610;Dbxref=Genbank:WP_001393510.1;Name=WP_001393510.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001393510.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3661041 3661586 . - . ID=gene3611;Name=SH04_RS18105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18105;old_locus_tag=SH04_18115 NZ_CP010443.1 Protein Homology CDS 3661041 3661586 . - 0 ID=cds3519;Parent=gene3611;Dbxref=Genbank:WP_000342431.1;Name=WP_000342431.1;Note=SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function;gbkey=CDS;product=protein Syd;protein_id=WP_000342431.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3661654 3662502 . + . ID=gene3612;Name=queF;gbkey=Gene;gene=queF;gene_biotype=protein_coding;locus_tag=SH04_RS18110;old_locus_tag=SH04_18120 NZ_CP010443.1 Protein Homology CDS 3661654 3662502 . + 0 ID=cds3520;Parent=gene3612;Dbxref=Genbank:WP_000100421.1;Name=WP_000100421.1;Note=catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis;gbkey=CDS;gene=queF;product=NADPH-dependent 7-cyano-7-deazaguanine reductase;protein_id=WP_000100421.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3662614 3663978 . + . ID=gene3613;Name=SH04_RS18115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18115;old_locus_tag=SH04_18125 NZ_CP010443.1 Protein Homology CDS 3662614 3663978 . + 0 ID=cds3521;Parent=gene3613;Dbxref=Genbank:WP_000627968.1;Name=WP_000627968.1;gbkey=CDS;product=LOG family protein;protein_id=WP_000627968.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3664535 3665824 . + . ID=gene3614;Name=SH04_RS18120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18120;old_locus_tag=SH04_18130 NZ_CP010443.1 Protein Homology CDS 3664535 3665824 . + 0 ID=cds3522;Parent=gene3614;Dbxref=Genbank:WP_000450476.1;Name=WP_000450476.1;gbkey=CDS;product=serine transporter;protein_id=WP_000450476.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3665882 3667249 . + . ID=gene3615;Name=SH04_RS18125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18125;old_locus_tag=SH04_18135 NZ_CP010443.1 Protein Homology CDS 3665882 3667249 . + 0 ID=cds3523;Parent=gene3615;Dbxref=Genbank:WP_000626422.1;Name=WP_000626422.1;Note=catalyzes the formation of pyruvate from serine;gbkey=CDS;product=L-serine dehydratase 2;protein_id=WP_000626422.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3667361 3668116 . + . ID=gene3616;Name=SH04_RS18130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18130;old_locus_tag=SH04_18140 NZ_CP010443.1 Protein Homology CDS 3667361 3668116 . + 0 ID=cds3524;Parent=gene3616;Dbxref=Genbank:WP_000268232.1;Name=WP_000268232.1;Note=similar to flap endonuclease%3B FEN family%3B protein from E. coli does not have exonuclease activity;gbkey=CDS;product=flap endonuclease Xni;protein_id=WP_000268232.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3668171 3669319 . - . ID=gene3617;Name=SH04_RS18135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18135;old_locus_tag=SH04_18145 NZ_CP010443.1 Protein Homology CDS 3668171 3669319 . - 0 ID=cds3525;Parent=gene3617;Dbxref=Genbank:WP_000013588.1;Name=WP_000013588.1;gbkey=CDS;product=lactaldehyde reductase;protein_id=WP_000013588.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3669347 3669994 . - . ID=gene3618;Name=SH04_RS18140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18140;old_locus_tag=SH04_18150 NZ_CP010443.1 Protein Homology CDS 3669347 3669994 . - 0 ID=cds3526;Parent=gene3618;Dbxref=Genbank:WP_000440781.1;Name=WP_000440781.1;Note=catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate;gbkey=CDS;product=L-fuculose phosphate aldolase;protein_id=WP_000440781.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3670541 3671857 . + . ID=gene3619;Name=SH04_RS18145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18145;old_locus_tag=SH04_18155 NZ_CP010443.1 Protein Homology CDS 3670541 3671857 . + 0 ID=cds3527;Parent=gene3619;Dbxref=Genbank:WP_000528603.1;Name=WP_000528603.1;gbkey=CDS;product=L-fucose-proton symporter;protein_id=WP_000528603.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3671890 3673665 . + . ID=gene3620;Name=fucI;gbkey=Gene;gene=fucI;gene_biotype=protein_coding;locus_tag=SH04_RS18150;old_locus_tag=SH04_18160 NZ_CP010443.1 Protein Homology CDS 3671890 3673665 . + 0 ID=cds3528;Parent=gene3620;Dbxref=Genbank:WP_000724153.1;Name=WP_000724153.1;Note=catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose;gbkey=CDS;gene=fucI;product=L-fucose isomerase;protein_id=WP_000724153.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3673774 3675192 . + . ID=gene3621;Name=SH04_RS18155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18155;old_locus_tag=SH04_18165 NZ_CP010443.1 Protein Homology CDS 3673774 3675192 . + 0 ID=cds3529;Parent=gene3621;Dbxref=Genbank:WP_000808392.1;Name=WP_000808392.1;gbkey=CDS;product=L-fuculokinase;protein_id=WP_000808392.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3675194 3675616 . + . ID=gene3622;Name=SH04_RS18160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18160;old_locus_tag=SH04_18170 NZ_CP010443.1 Protein Homology CDS 3675194 3675616 . + 0 ID=cds3530;Parent=gene3622;Dbxref=Genbank:WP_000920840.1;Name=WP_000920840.1;gbkey=CDS;product=L-fucose mutarotase;protein_id=WP_000920840.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3675674 3676405 . + . ID=gene3623;Name=SH04_RS18165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18165;old_locus_tag=SH04_18175 NZ_CP010443.1 Protein Homology CDS 3675674 3676405 . + 0 ID=cds3531;Parent=gene3623;Dbxref=Genbank:WP_000642344.1;Name=WP_000642344.1;Note=regulates expression of genes involved in L-fucose utilization;gbkey=CDS;product=l-fucose operon activator;protein_id=WP_000642344.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3676449 3677549 . - . ID=gene3624;Name=SH04_RS18170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18170;old_locus_tag=SH04_18180 NZ_CP010443.1 Protein Homology CDS 3676449 3677549 . - 0 ID=cds3532;Parent=gene3624;Dbxref=Genbank:WP_001045520.1;Name=WP_001045520.1;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase M;protein_id=WP_001045520.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3677542 3677937 . - . ID=gene3625;Name=SH04_RS18175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18175;old_locus_tag=SH04_18185 NZ_CP010443.1 Protein Homology CDS 3677542 3677937 . - 0 ID=cds3533;Parent=gene3625;Dbxref=Genbank:WP_000203905.1;Name=WP_000203905.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000203905.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3677956 3678873 . - . ID=gene3626;Name=SH04_RS18180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18180;old_locus_tag=SH04_18190 NZ_CP010443.1 Protein Homology CDS 3677956 3678873 . - 0 ID=cds3534;Parent=gene3626;Dbxref=Genbank:WP_000044401.1;Name=WP_000044401.1;Note=Glycine cleavage system transcriptional activator%3B activates the gcvTHP operon in the presence of glycine and represses the operon in its absence;gbkey=CDS;product=glycine cleavage system transcriptional activator;protein_id=WP_000044401.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3679224 3679451 . - . ID=gene3627;Name=SH04_RS18185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18185;old_locus_tag=SH04_18195 NZ_CP010443.1 Protein Homology CDS 3679224 3679451 . - 0 ID=cds3535;Parent=gene3627;Dbxref=Genbank:WP_000750398.1;Name=WP_000750398.1;gbkey=CDS;product=DUF903 domain-containing protein;protein_id=WP_000750398.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3679643 3680848 . + . ID=gene3628;Name=SH04_RS18190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18190;old_locus_tag=SH04_18200 NZ_CP010443.1 Protein Homology CDS 3679643 3680848 . + 0 ID=cds3536;Parent=gene3628;Dbxref=Genbank:WP_001300698.1;Name=WP_001300698.1;gbkey=CDS;product=cysteine desulfurase CsdA;protein_id=WP_001300698.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3680848 3681291 . + . ID=gene3629;Name=SH04_RS18195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18195;old_locus_tag=SH04_18205 NZ_CP010443.1 Protein Homology CDS 3680848 3681291 . + 0 ID=cds3537;Parent=gene3629;Dbxref=Genbank:WP_000184261.1;Name=WP_000184261.1;Note=binds and activates CsdA%3B Fe-S protein;gbkey=CDS;product=sulfur acceptor protein CsdE;protein_id=WP_000184261.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3681342 3682148 . - . ID=gene3630;Name=SH04_RS18200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18200;old_locus_tag=SH04_18210 NZ_CP010443.1 Protein Homology CDS 3681342 3682148 . - 0 ID=cds3538;Parent=gene3630;Dbxref=Genbank:WP_000117728.1;Name=WP_000117728.1;Note=accepts sulfur from CsdA;gbkey=CDS;product=tRNA threonylcarbamoyladenosine dehydratase;protein_id=WP_000117728.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3682387 3683484 . - . ID=gene3631;Name=mltA;gbkey=Gene;gene=mltA;gene_biotype=protein_coding;locus_tag=SH04_RS18205;old_locus_tag=SH04_18215 NZ_CP010443.1 Protein Homology CDS 3682387 3683484 . - 0 ID=cds3539;Parent=gene3631;Dbxref=Genbank:WP_000678646.1;Name=WP_000678646.1;Note=membrane-bound%2C lytic%3B catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues;gbkey=CDS;gene=mltA;product=murein transglycosylase;protein_id=WP_000678646.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 3683691 3683991 . + . ID=id195;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3683693 3683769 . + . ID=gene3632;Name=SH04_RS18210;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS18210;old_locus_tag=SH04_18220 NZ_CP010443.1 tRNAscan-SE tRNA 3683693 3683769 . + . ID=rna92;Parent=gene3632;anticodon=(pos:3683727..3683729);gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 tRNAscan-SE exon 3683693 3683769 . + . ID=id196;Parent=rna92;anticodon=(pos:3683727..3683729);gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 RefSeq gene 3683803 3683879 . + . ID=gene3633;Name=SH04_RS18215;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS18215;old_locus_tag=SH04_18225 NZ_CP010443.1 tRNAscan-SE tRNA 3683803 3683879 . + . ID=rna93;Parent=gene3633;anticodon=(pos:3683837..3683839);gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 tRNAscan-SE exon 3683803 3683879 . + . ID=id197;Parent=rna93;anticodon=(pos:3683837..3683839);gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 RefSeq gene 3683913 3683989 . + . ID=gene3634;Name=SH04_RS18220;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS18220;old_locus_tag=SH04_18230 NZ_CP010443.1 tRNAscan-SE tRNA 3683913 3683989 . + . ID=rna94;Parent=gene3634;anticodon=(pos:3683947..3683949);gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 tRNAscan-SE exon 3683913 3683989 . + . ID=id198;Parent=rna94;anticodon=(pos:3683947..3683949);gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 RefSeq gene 3684063 3685316 . - . ID=gene3635;Name=amiC;gbkey=Gene;gene=amiC;gene_biotype=protein_coding;locus_tag=SH04_RS18225;old_locus_tag=SH04_18235 NZ_CP010443.1 Protein Homology CDS 3684063 3685316 . - 0 ID=cds3540;Parent=gene3635;Dbxref=Genbank:WP_000016907.1;Name=WP_000016907.1;Note=hydrolyzes the bond between N-acetylmuramic acid and amino acid residues in peptidoglycan;gbkey=CDS;gene=amiC;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_000016907.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3685548 3686879 . + . ID=gene3636;Name=SH04_RS18230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18230;old_locus_tag=SH04_18240 NZ_CP010443.1 Protein Homology CDS 3685548 3686879 . + 0 ID=cds3541;Parent=gene3636;Dbxref=Genbank:WP_046377552.1;Name=WP_046377552.1;Note=catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis;gbkey=CDS;product=N-acetylglutamate synthase;protein_id=WP_046377552.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3686941 3688767 . - . ID=gene3637;Name=recD;gbkey=Gene;gene=recD;gene_biotype=pseudogene;locus_tag=SH04_RS18235;pseudo=true NZ_CP010443.1 Protein Homology CDS 3686941 3688767 . - 0 ID=cds3542;Parent=gene3637;Note=helicase/nuclease%3B with RecBC catalyzes the exonucleolytic cleavage of DNA%3B RecD has 5' to 3' helicase activity;gbkey=CDS;gene=recD;product=exonuclease V subunit alpha;pseudo=true;transl_except=(pos:complement(3687079..3687081)%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 3688767 3692309 . - . ID=gene3638;Name=recB;gbkey=Gene;gene=recB;gene_biotype=protein_coding;locus_tag=SH04_RS18240;old_locus_tag=SH04_18250 NZ_CP010443.1 Protein Homology CDS 3688767 3692309 . - 0 ID=cds3543;Parent=gene3638;Dbxref=Genbank:WP_001285993.1;Name=WP_001285993.1;Note=helicase/nuclease%3B with RecCD catalyzes the exonucleolytic cleavage of DNA%3B RecD has 5' to 3' helicase activity;gbkey=CDS;gene=recB;product=RecBCD enzyme subunit RecB;protein_id=WP_001285993.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3692302 3695190 . - . ID=gene3639;Name=SH04_RS18245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18245;old_locus_tag=SH04_18255 NZ_CP010443.1 Protein Homology CDS 3692302 3695190 . - 0 ID=cds3544;Parent=gene3639;Dbxref=Genbank:WP_001138201.1;Name=WP_001138201.1;Note=degrades small peptides;gbkey=CDS;product=protease 3;protein_id=WP_001138201.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3695366 3698734 . - . ID=gene3640;Name=recC;gbkey=Gene;gene=recC;gene_biotype=protein_coding;locus_tag=SH04_RS18250;old_locus_tag=SH04_18260 NZ_CP010443.1 Protein Homology CDS 3695366 3698734 . - 0 ID=cds3545;Parent=gene3640;Dbxref=Genbank:WP_000946938.1;Name=WP_000946938.1;Note=catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides%3B component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination;gbkey=CDS;gene=recC;product=RecBCD enzyme subunit RecC;protein_id=WP_000946938.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3698747 3699070 . - . ID=gene3641;Name=SH04_RS18255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18255;old_locus_tag=SH04_18265 NZ_CP010443.1 Protein Homology CDS 3698747 3699070 . - 0 ID=cds3546;Parent=gene3641;Dbxref=Genbank:WP_001276460.1;Name=WP_001276460.1;gbkey=CDS;product=prepilin peptidase-dependent protein C;protein_id=WP_001276460.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3699055 3699462 . - . ID=gene3642;Name=SH04_RS18260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18260;old_locus_tag=SH04_18270 NZ_CP010443.1 Protein Homology CDS 3699055 3699462 . - 0 ID=cds3547;Parent=gene3642;Dbxref=Genbank:WP_001078376.1;Name=WP_001078376.1;gbkey=CDS;product=DUF2509 domain-containing protein;protein_id=WP_001078376.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3699459 3700022 . - . ID=gene3643;Name=SH04_RS18265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18265;old_locus_tag=SH04_18275 NZ_CP010443.1 Protein Homology CDS 3699459 3700022 . - 0 ID=cds3548;Parent=gene3643;Dbxref=Genbank:WP_001144315.1;Name=WP_001144315.1;gbkey=CDS;product=prepilin peptidase-dependent protein B;protein_id=WP_001144315.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3700013 3700483 . - . ID=gene3644;Name=SH04_RS18270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18270;old_locus_tag=SH04_18280 NZ_CP010443.1 Protein Homology CDS 3700013 3700483 . - 0 ID=cds3549;Parent=gene3644;Dbxref=Genbank:WP_000857051.1;Name=WP_000857051.1;gbkey=CDS;product=prepilin peptidase-dependent protein A;protein_id=WP_000857051.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3700667 3701461 . - . ID=gene3645;Name=SH04_RS18275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18275;old_locus_tag=SH04_18285 NZ_CP010443.1 Protein Homology CDS 3700667 3701461 . - 0 ID=cds3550;Parent=gene3645;Dbxref=Genbank:WP_000816232.1;Name=WP_000816232.1;gbkey=CDS;product=thymidylate synthase;protein_id=WP_000816232.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3701468 3702343 . - . ID=gene3646;Name=SH04_RS18280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18280;old_locus_tag=SH04_18290 NZ_CP010443.1 Protein Homology CDS 3701468 3702343 . - 0 ID=cds3551;Parent=gene3646;Dbxref=Genbank:WP_000204658.1;Name=WP_000204658.1;gbkey=CDS;product=prolipoprotein diacylglyceryl transferase;protein_id=WP_000204658.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3702494 3704740 . - . ID=gene3647;Name=SH04_RS18285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18285;old_locus_tag=SH04_18295 NZ_CP010443.1 Protein Homology CDS 3702494 3704740 . - 0 ID=cds3552;Parent=gene3647;Dbxref=Genbank:WP_000957910.1;Name=WP_000957910.1;Note=member of a second PTS chain involved in nitrogen metabolism%3B PtsP phosphorylates NPr;gbkey=CDS;product=phosphoenolpyruvate-protein phosphotransferase PtsP;protein_id=WP_000957910.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3704753 3705283 . - . ID=gene3648;Name=SH04_RS18290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18290;old_locus_tag=SH04_18300 NZ_CP010443.1 Protein Homology CDS 3704753 3705283 . - 0 ID=cds3553;Parent=gene3648;Dbxref=Genbank:WP_000564489.1;Name=WP_000564489.1;Note=hydrolyzes diadenosine polyphosphate;gbkey=CDS;product=RNA pyrophosphohydrolase;protein_id=WP_000564489.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3705595 3705789 . + . ID=gene3649;Name=SH04_RS18295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18295;old_locus_tag=SH04_18305 NZ_CP010443.1 Protein Homology CDS 3705595 3705789 . + 0 ID=cds3554;Parent=gene3649;Dbxref=Genbank:WP_001453804.1;Name=WP_001453804.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001453804.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3705728 3705889 . + . ID=gene3650;Name=SH04_RS18300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18300;old_locus_tag=SH04_18310 NZ_CP010443.1 Protein Homology CDS 3705728 3705889 . + 0 ID=cds3555;Parent=gene3650;Dbxref=Genbank:WP_001300513.1;Name=WP_001300513.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001300513.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3705968 3706657 . + . ID=gene3651;Name=SH04_RS18305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18305;old_locus_tag=SH04_18315 NZ_CP010443.1 Protein Homology CDS 3705968 3706657 . + 0 ID=cds3556;Parent=gene3651;Dbxref=Genbank:WP_000082201.1;Name=WP_000082201.1;Note=MutH%3B Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair;gbkey=CDS;product=DNA mismatch repair protein MutH;protein_id=WP_000082201.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3706726 3707439 . + . ID=gene3652;Name=SH04_RS18310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18310;old_locus_tag=SH04_18320 NZ_CP010443.1 Protein Homology CDS 3706726 3707439 . + 0 ID=cds3557;Parent=gene3652;Dbxref=Genbank:WP_000895624.1;Name=WP_000895624.1;gbkey=CDS;product=membrane protein;protein_id=WP_000895624.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3707577 3707795 . + . ID=gene3653;Name=SH04_RS18315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18315;old_locus_tag=SH04_18325 NZ_CP010443.1 Protein Homology CDS 3707577 3707795 . + 0 ID=cds3558;Parent=gene3653;Dbxref=Genbank:WP_000758655.1;Name=WP_000758655.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000758655.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3707903 3708943 . + . ID=gene3654;Name=tas;gbkey=Gene;gene=tas;gene_biotype=protein_coding;locus_tag=SH04_RS18320;old_locus_tag=SH04_18330 NZ_CP010443.1 Protein Homology CDS 3707903 3708943 . + 0 ID=cds3559;Parent=gene3654;Dbxref=Genbank:WP_001199295.1;Name=WP_001199295.1;Note=complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain%3B member of the aldo/keto reductase 2 family%3B crystal structure of purified Escherichia coli protein shows bound NADPH;gbkey=CDS;gene=tas;product=protein tas;protein_id=WP_001199295.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3708975 3710168 . - . ID=gene3655;Name=SH04_RS18325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18325;old_locus_tag=SH04_18335 NZ_CP010443.1 Protein Homology CDS 3708975 3710168 . - 0 ID=cds3560;Parent=gene3655;Dbxref=Genbank:WP_000004616.1;Name=WP_000004616.1;gbkey=CDS;product=lysophospholipid transporter LplT;protein_id=WP_000004616.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3710161 3712320 . - . ID=gene3656;Name=SH04_RS18330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18330;old_locus_tag=SH04_18340 NZ_CP010443.1 Protein Homology CDS 3710161 3712320 . - 0 ID=cds3561;Parent=gene3656;Dbxref=Genbank:WP_000899054.1;Name=WP_000899054.1;Note=Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1;gbkey=CDS;product=bifunctional protein Aas;protein_id=WP_000899054.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3712905 3713936 . + . ID=gene3657;Name=SH04_RS18335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18335;old_locus_tag=SH04_18345 NZ_CP010443.1 Protein Homology CDS 3712905 3713936 . + 0 ID=cds3562;Parent=gene3657;Dbxref=Genbank:WP_000201063.1;Name=WP_000201063.1;Note=controls transcription of galETKM;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000201063.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3713943 3715205 . - . ID=gene3658;Name=SH04_RS18340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18340;old_locus_tag=SH04_18350 NZ_CP010443.1 Protein Homology CDS 3713943 3715205 . - 0 ID=cds3563;Parent=gene3658;Dbxref=Genbank:WP_001120711.1;Name=WP_001120711.1;Note=catalyzes the decarboxylation of diaminopimelate into lysine%3B pyridoxal phosphate(PLP)-binding;gbkey=CDS;product=diaminopimelate decarboxylase;protein_id=WP_001120711.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3715327 3716262 . + . ID=gene3659;Name=SH04_RS18345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18345;old_locus_tag=SH04_18355 NZ_CP010443.1 Protein Homology CDS 3715327 3716262 . + 0 ID=cds3564;Parent=gene3659;Dbxref=Genbank:WP_000741825.1;Name=WP_000741825.1;Note=activates the transcription of the lysA gene encoding diaminopimelate decarboxylase;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000741825.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3716249 3716941 . - . ID=gene3660;Name=SH04_RS18350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18350;old_locus_tag=SH04_18360 NZ_CP010443.1 Protein Homology CDS 3716249 3716941 . - 0 ID=cds3565;Parent=gene3660;Dbxref=Genbank:WP_000848659.1;Name=WP_000848659.1;gbkey=CDS;product=Asp/Glu_racemase;protein_id=WP_000848659.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3717070 3718488 . - . ID=gene3661;Name=SH04_RS18355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18355;old_locus_tag=SH04_18365 NZ_CP010443.1 Protein Homology CDS 3717070 3718488 . - 0 ID=cds3566;Parent=gene3661;Dbxref=Genbank:WP_001395388.1;Name=WP_001395388.1;gbkey=CDS;product=D-galactose transporter;protein_id=WP_001395388.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3718803 3719564 . - . ID=gene3662;Name=SH04_RS18360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18360;old_locus_tag=SH04_18370 NZ_CP010443.1 Protein Homology CDS 3718803 3719564 . - 0 ID=cds3567;Parent=gene3662;Dbxref=Genbank:WP_000603502.1;Name=WP_000603502.1;Note=catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate;gbkey=CDS;product=2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase;protein_id=WP_000603502.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3719594 3720430 . - . ID=gene3663;Name=SH04_RS18365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18365;old_locus_tag=SH04_18375 NZ_CP010443.1 Protein Homology CDS 3719594 3720430 . - 0 ID=cds3568;Parent=gene3663;Dbxref=Genbank:WP_000383237.1;Name=WP_000383237.1;Note=4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase%3B catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2%2C5-hexodiulosonate;gbkey=CDS;product=4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase;protein_id=WP_000383237.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3720717 3721898 . - . ID=gene3664;Name=SH04_RS18370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18370;old_locus_tag=SH04_18380 NZ_CP010443.1 Protein Homology CDS 3720717 3721898 . - 0 ID=cds3569;Parent=gene3664;Dbxref=Genbank:WP_038432649.1;Name=WP_038432649.1;gbkey=CDS;product=acetyl-CoA acetyltransferase;protein_id=WP_038432649.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3722153 3723382 . + . ID=gene3665;Name=SH04_RS18375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18375;old_locus_tag=SH04_18385 NZ_CP010443.1 Protein Homology CDS 3722153 3723382 . + 0 ID=cds3570;Parent=gene3665;Dbxref=Genbank:WP_000065950.1;Name=WP_000065950.1;gbkey=CDS;product=transporter;protein_id=WP_000065950.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3723956 3724474 . + . ID=gene3666;Name=SH04_RS18380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18380;old_locus_tag=SH04_18390 NZ_CP010443.1 Protein Homology CDS 3723956 3724474 . + 0 ID=cds3571;Parent=gene3666;Dbxref=Genbank:WP_000267585.1;Name=WP_000267585.1;gbkey=CDS;product=LuxR family transcriptional regulator;protein_id=WP_000267585.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3724808 3725617 . + . ID=gene3667;Name=SH04_RS18385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18385;old_locus_tag=SH04_18395 NZ_CP010443.1 Protein Homology CDS 3724808 3725617 . + 0 ID=cds3572;Parent=gene3667;Dbxref=Genbank:WP_001300710.1;Name=WP_001300710.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001300710.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3725610 3726092 . + . ID=gene3668;Name=SH04_RS18390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18390;old_locus_tag=SH04_18400 NZ_CP010443.1 Protein Homology CDS 3725610 3726092 . + 0 ID=cds3573;Parent=gene3668;Dbxref=Genbank:WP_000568339.1;Name=WP_000568339.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000568339.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3726241 3726666 . - . ID=gene3669;Name=SH04_RS18395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18395;old_locus_tag=SH04_18405 NZ_CP010443.1 Protein Homology CDS 3726241 3726666 . - 0 ID=cds3574;Parent=gene3669;Dbxref=Genbank:WP_000350612.1;Name=WP_000350612.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000350612.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3726860 3727349 . + . ID=gene3670;Name=SH04_RS18400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS18400;pseudo=true NZ_CP010443.1 Protein Homology CDS 3726860 3727349 . + 0 ID=cds3575;Parent=gene3670;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 3727574 3728065 . + . ID=gene3671;Name=SH04_RS18405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18405;old_locus_tag=SH04_18415 NZ_CP010443.1 Protein Homology CDS 3727574 3728065 . + 0 ID=cds3576;Parent=gene3671;Dbxref=Genbank:WP_000102780.1;Name=WP_000102780.1;gbkey=CDS;product=SycD-like chaperone family hypothetical protein;protein_id=WP_000102780.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3728400 3729776 . + . ID=gene3672;Name=SH04_RS18410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18410;old_locus_tag=SH04_18420 NZ_CP010443.1 Protein Homology CDS 3728400 3729776 . + 0 ID=cds3577;Parent=gene3672;Dbxref=Genbank:WP_038432651.1;Name=WP_038432651.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_038432651.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3729944 3730162 . + . ID=gene3673;Name=SH04_RS18415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18415;old_locus_tag=SH04_18425 NZ_CP010443.1 Protein Homology CDS 3729944 3730162 . + 0 ID=cds3578;Parent=gene3673;Dbxref=Genbank:WP_000184091.1;Name=WP_000184091.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000184091.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3730347 3730721 . + . ID=gene3674;Name=SH04_RS18420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18420;old_locus_tag=SH04_18430 NZ_CP010443.1 Protein Homology CDS 3730347 3730721 . + 0 ID=cds3579;Parent=gene3674;Dbxref=Genbank:WP_001315817.1;Name=WP_001315817.1;gbkey=CDS;product=lytic transglycosylase;protein_id=WP_001315817.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3730766 3731212 . - . ID=gene3675;Name=SH04_RS18425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18425;old_locus_tag=SH04_18435 NZ_CP010443.1 Protein Homology CDS 3730766 3731212 . - 0 ID=cds3580;Parent=gene3675;Dbxref=Genbank:WP_001310227.1;Name=WP_001310227.1;gbkey=CDS;product=LuxR family transcriptional regulator;protein_id=WP_001310227.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3731243 3731398 . - . ID=gene3676;Name=SH04_RS18430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18430;old_locus_tag=SH04_18440 NZ_CP010443.1 Protein Homology CDS 3731243 3731398 . - 0 ID=cds3581;Parent=gene3676;Dbxref=Genbank:WP_000516288.1;Name=WP_000516288.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000516288.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3731620 3732051 . - . ID=gene3677;Name=SH04_RS18435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18435;old_locus_tag=SH04_18445 NZ_CP010443.1 Protein Homology CDS 3731620 3732051 . - 0 ID=cds3582;Parent=gene3677;Dbxref=Genbank:WP_000606430.1;Name=WP_000606430.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000606430.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3732054 3732326 . - . ID=gene3678;Name=SH04_RS18440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18440;old_locus_tag=SH04_18450 NZ_CP010443.1 Protein Homology CDS 3732054 3732326 . - 0 ID=cds3583;Parent=gene3678;Dbxref=Genbank:WP_001350544.1;Name=WP_001350544.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001350544.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3732268 3732423 . - . ID=gene3679;Name=SH04_RS18445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18445;old_locus_tag=SH04_18455 NZ_CP010443.1 Protein Homology CDS 3732268 3732423 . - 0 ID=cds3584;Parent=gene3679;Dbxref=Genbank:WP_001372624.1;Name=WP_001372624.1;gbkey=CDS;product=secretion protein;protein_id=WP_001372624.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 3732665 3734000 . + . ID=id199;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3732678 3733583 . - . ID=gene3680;Name=SH04_RS18450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18450;old_locus_tag=SH04_18460 NZ_CP010443.1 Protein Homology CDS 3732678 3733583 . - 0 ID=cds3585;Parent=gene3680;Dbxref=Genbank:WP_000376502.1;Name=WP_000376502.1;gbkey=CDS;product=integrase;protein_id=WP_000376502.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3733541 3733906 . - . ID=gene3681;Name=SH04_RS18455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18455;old_locus_tag=SH04_18465 NZ_CP010443.1 Protein Homology CDS 3733541 3733906 . - 0 ID=cds3586;Parent=gene3681;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3733995 3734294 . - . ID=gene3682;Name=SH04_RS18460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18460;old_locus_tag=SH04_18470 NZ_CP010443.1 Protein Homology CDS 3733995 3734294 . - 0 ID=cds3587;Parent=gene3682;Dbxref=Genbank:WP_011443601.1;Name=WP_011443601.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011443601.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3734340 3735134 . - . ID=gene3683;Name=SH04_RS18465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18465;old_locus_tag=SH04_18475 NZ_CP010443.1 Protein Homology CDS 3734340 3735134 . - 0 ID=cds3588;Parent=gene3683;Dbxref=Genbank:WP_000676919.1;Name=WP_000676919.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000676919.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3735290 3735363 . - . ID=gene3684;Name=SH04_RS18470;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS18470;old_locus_tag=SH04_18480 NZ_CP010443.1 tRNAscan-SE tRNA 3735290 3735363 . - . ID=rna95;Parent=gene3684;anticodon=(pos:complement(3735329..3735331));gbkey=tRNA;product=tRNA-Gly NZ_CP010443.1 tRNAscan-SE exon 3735290 3735363 . - . ID=id200;Parent=rna95;anticodon=(pos:complement(3735329..3735331));gbkey=tRNA;product=tRNA-Gly NZ_CP010443.1 RefSeq gene 3735442 3736197 . - . ID=gene3685;Name=SH04_RS18475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18475;old_locus_tag=SH04_18485 NZ_CP010443.1 Protein Homology CDS 3735442 3736197 . - 0 ID=cds3589;Parent=gene3685;Dbxref=Genbank:WP_001301085.1;Name=WP_001301085.1;gbkey=CDS;product=peptidoglycan-binding protein LysM;protein_id=WP_001301085.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3736612 3738909 . + . ID=gene3686;Name=SH04_RS18480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18480;old_locus_tag=SH04_18490 NZ_CP010443.1 Protein Homology CDS 3736612 3738909 . + 0 ID=cds3590;Parent=gene3686;Dbxref=Genbank:WP_000388150.1;Name=WP_000388150.1;Note=molybdenum cofactor-binding protein%3B participates in purine salvage;gbkey=CDS;product=xanthine dehydrogenase subunit A;protein_id=WP_000388150.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3738920 3739798 . + . ID=gene3687;Name=SH04_RS18485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18485;old_locus_tag=SH04_18495 NZ_CP010443.1 Protein Homology CDS 3738920 3739798 . + 0 ID=cds3591;Parent=gene3687;Dbxref=Genbank:WP_000459182.1;Name=WP_000459182.1;Note=FAD-binding subunit%3B with XdhA and XdhC participates in purine salvage;gbkey=CDS;product=xanthine dehydrogenase FAD-binding subunit;protein_id=WP_000459182.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3739795 3740274 . + . ID=gene3688;Name=SH04_RS18490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18490;old_locus_tag=SH04_18500 NZ_CP010443.1 Protein Homology CDS 3739795 3740274 . + 0 ID=cds3592;Parent=gene3688;Dbxref=Genbank:WP_001016605.1;Name=WP_001016605.1;Note=iron-sulfur-binding subunit%3B with XdhA and XdhB participates in purine salvage;gbkey=CDS;product=xanthine dehydrogenase iron-sulfur-binding subunit;protein_id=WP_001016605.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3740314 3742092 . - . ID=gene3689;Name=SH04_RS18495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18495;old_locus_tag=SH04_18505 NZ_CP010443.1 Protein Homology CDS 3740314 3742092 . - 0 ID=cds3593;Parent=gene3689;Dbxref=Genbank:WP_000417791.1;Name=WP_000417791.1;gbkey=CDS;product=sigma-54-interacting transcriptional activator;protein_id=WP_000417791.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3742571 3743758 . + . ID=gene3690;Name=SH04_RS18500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18500;old_locus_tag=SH04_18510 NZ_CP010443.1 Protein Homology CDS 3742571 3743758 . + 0 ID=cds3594;Parent=gene3690;Dbxref=Genbank:WP_000859787.1;Name=WP_000859787.1;gbkey=CDS;product=ornithine carbamoyltransferase;protein_id=WP_000859787.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3743816 3745012 . + . ID=gene3691;Name=SH04_RS18505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18505;old_locus_tag=SH04_18515 NZ_CP010443.1 Protein Homology CDS 3743816 3745012 . + 0 ID=cds3595;Parent=gene3691;Dbxref=Genbank:WP_000110493.1;Name=WP_000110493.1;Note=catalyzes the formation of pyruvate from 2%2C3-diaminopropionate;gbkey=CDS;product=diaminopropionate ammonia-lyase;protein_id=WP_000110493.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3745070 3746281 . + . ID=gene3692;Name=SH04_RS18510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18510;old_locus_tag=SH04_18520 NZ_CP010443.1 Protein Homology CDS 3745070 3746281 . + 0 ID=cds3596;Parent=gene3692;Dbxref=Genbank:WP_001107125.1;Name=WP_001107125.1;Note=Zn-dependent extracellular dipeptidase%3B similar to succinyl-diaminopimelate desuccinylases;gbkey=CDS;product=peptidase;protein_id=WP_001107125.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3746334 3747719 . + . ID=gene3693;Name=SH04_RS18515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18515;old_locus_tag=SH04_18525 NZ_CP010443.1 Protein Homology CDS 3746334 3747719 . + 0 ID=cds3597;Parent=gene3693;Dbxref=Genbank:WP_001264442.1;Name=WP_001264442.1;Note=catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position;gbkey=CDS;product=D-phenylhydantoinase;protein_id=WP_001264442.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3747767 3748699 . + . ID=gene3694;Name=SH04_RS18520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18520;old_locus_tag=SH04_18530 NZ_CP010443.1 Protein Homology CDS 3747767 3748699 . + 0 ID=cds3598;Parent=gene3694;Dbxref=Genbank:WP_000037992.1;Name=WP_000037992.1;gbkey=CDS;product=carbamate kinase-like protein YqeA;protein_id=WP_000037992.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3748920 3750545 . - . ID=gene3695;Name=SH04_RS18525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18525;old_locus_tag=SH04_18535 NZ_CP010443.1 Protein Homology CDS 3748920 3750545 . - 0 ID=cds3599;Parent=gene3695;Dbxref=Genbank:WP_001020381.1;Name=WP_001020381.1;gbkey=CDS;product=XdhC-CoxI family protein with NAD(P)-binding Rossman fold;protein_id=WP_001020381.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3750593 3751363 . - . ID=gene3696;Name=SH04_RS18530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18530;old_locus_tag=SH04_18540 NZ_CP010443.1 Protein Homology CDS 3750593 3751363 . - 0 ID=cds3600;Parent=gene3696;Dbxref=Genbank:WP_001298920.1;Name=WP_001298920.1;gbkey=CDS;product=selenium-dependent hydroxylase accessory protein;protein_id=WP_001298920.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3751466 3752044 . + . ID=gene3697;Name=SH04_RS18535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18535;old_locus_tag=SH04_18545 NZ_CP010443.1 Protein Homology CDS 3751466 3752044 . + 0 ID=cds3601;Parent=gene3697;Dbxref=Genbank:WP_001272828.1;Name=WP_001272828.1;gbkey=CDS;product=molybdenum cofactor cytidylyltransferase;protein_id=WP_001272828.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3752366 3755464 . + . ID=gene3698;Name=SH04_RS18540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18540;old_locus_tag=SH04_18550 NZ_CP010443.1 Protein Homology CDS 3752366 3755464 . + 0 ID=cds3602;Parent=gene3698;Dbxref=Genbank:WP_000502395.1;Name=WP_000502395.1;Note=with YgfM and YgfN forms a selenate reductase%2C which seems to catalyze the reduction of selenate to selenite%3B YgfK mutants are unable to reduce selenate%3B involved in purine salvage process%3B seems to act as an oxidoreductase%2C but sequence similarity suggests it is a dihydrothymine dehydrogenase;gbkey=CDS;product=Fe-S subunit oxidoreductase subunit;protein_id=WP_000502395.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3755467 3756795 . + . ID=gene3699;Name=SH04_RS18545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18545;old_locus_tag=SH04_18555 NZ_CP010443.1 Protein Homology CDS 3755467 3756795 . + 0 ID=cds3603;Parent=gene3699;Dbxref=Genbank:WP_000906252.1;Name=WP_000906252.1;Note=in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS;gbkey=CDS;product=protein SsnA;protein_id=WP_000906252.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3756846 3757625 . + . ID=gene3700;Name=SH04_RS18550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18550;old_locus_tag=SH04_18560 NZ_CP010443.1 Protein Homology CDS 3756846 3757625 . + 0 ID=cds3604;Parent=gene3700;Dbxref=Genbank:WP_000572462.1;Name=WP_000572462.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000572462.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3757622 3760492 . + . ID=gene3701;Name=SH04_RS18555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18555;old_locus_tag=SH04_18565 NZ_CP010443.1 Protein Homology CDS 3757622 3760492 . + 0 ID=cds3605;Parent=gene3701;Dbxref=Genbank:WP_000583615.1;Name=WP_000583615.1;gbkey=CDS;product=hypoxanthine oxidase XdhD;protein_id=WP_000583615.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3760657 3762057 . + . ID=gene3702;Name=SH04_RS18560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18560;old_locus_tag=SH04_18570 NZ_CP010443.1 Protein Homology CDS 3760657 3762057 . + 0 ID=cds3606;Parent=gene3702;Dbxref=Genbank:WP_001280192.1;Name=WP_001280192.1;Note=high-affinity transporter for xanthine;gbkey=CDS;product=xanthine permease XanQ;protein_id=WP_001280192.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3762075 3763391 . + . ID=gene3703;Name=SH04_RS18565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18565;old_locus_tag=SH04_18575 NZ_CP010443.1 Protein Homology CDS 3762075 3763391 . + 0 ID=cds3607;Parent=gene3703;Dbxref=Genbank:WP_001336279.1;Name=WP_001336279.1;Note=Catalyzes the deamination of guanine;gbkey=CDS;product=guanine deaminase;protein_id=WP_001336279.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3763427 3764794 . + . ID=gene3704;Name=SH04_RS18570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18570;old_locus_tag=SH04_18580 NZ_CP010443.1 Protein Homology CDS 3763427 3764794 . + 0 ID=cds3608;Parent=gene3704;Dbxref=Genbank:WP_000012163.1;Name=WP_000012163.1;gbkey=CDS;product=guanine/hypoxanthine permease GhxQ;protein_id=WP_000012163.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3764830 3765318 . - . ID=gene3705;Name=SH04_RS18575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18575;old_locus_tag=SH04_18585 NZ_CP010443.1 Protein Homology CDS 3764830 3765318 . - 0 ID=cds3609;Parent=gene3705;Dbxref=Genbank:WP_000838428.1;Name=WP_000838428.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000838428.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3765318 3767237 . - . ID=gene3706;Name=SH04_RS18580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18580;old_locus_tag=SH04_18590 NZ_CP010443.1 Protein Homology CDS 3765318 3767237 . - 0 ID=cds3610;Parent=gene3706;Dbxref=Genbank:WP_001350545.1;Name=WP_001350545.1;Note=unknown function%3B in E. coli the aegA gene is regulated by Fnr%2C NarXL%2C and NarQ (but not ArcA)%2C induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic);gbkey=CDS;product=oxidoreductase Fe-S subunit/nucleotide-binding subunit;protein_id=WP_001350545.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3767540 3767728 . + . ID=gene3707;Name=SH04_RS18585;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS18585;pseudo=true NZ_CP010443.1 Protein Homology CDS 3767540 3767728 . + 0 ID=cds3611;Parent=gene3707;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:3767624..3767626%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 3767673 3769121 . + . ID=gene3708;Name=SH04_RS18590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18590;old_locus_tag=SH04_18600 NZ_CP010443.1 Protein Homology CDS 3767673 3769121 . + 0 ID=cds3612;Parent=gene3708;Dbxref=Genbank:WP_001295374.1;Name=WP_001295374.1;gbkey=CDS;product=uric acid transporter UacT;protein_id=WP_001295374.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3769123 3769248 . + . ID=gene3709;Name=SH04_RS18595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18595;old_locus_tag=SH04_18605 NZ_CP010443.1 Protein Homology CDS 3769123 3769248 . + 0 ID=cds3613;Parent=gene3709;Dbxref=Genbank:WP_001010156.1;Name=WP_001010156.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001010156.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3769371 3769919 . + . ID=gene3710;Name=SH04_RS18600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18600;old_locus_tag=SH04_18610 NZ_CP010443.1 Protein Homology CDS 3769371 3769919 . + 0 ID=cds3614;Parent=gene3710;Dbxref=Genbank:WP_001192820.1;Name=WP_001192820.1;Note=catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate;gbkey=CDS;product=isopentenyl-diphosphate delta isomerase;protein_id=WP_001192820.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3769963 3771480 . - . ID=gene3711;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=SH04_RS18605;old_locus_tag=SH04_18615 NZ_CP010443.1 Protein Homology CDS 3769963 3771480 . - 0 ID=cds3615;Parent=gene3711;Dbxref=Genbank:WP_000003071.1;Name=WP_000003071.1;Note=class II%3B LysRS2%3B catalyzes a two-step reaction%2C first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B in Methanosarcina barkeri%2C LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1;gbkey=CDS;gene=lysS;product=lysine--tRNA ligase;protein_id=WP_000003071.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3771490 3772371 . - . ID=gene3712;Name=SH04_RS18610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18610;old_locus_tag=SH04_18620 NZ_CP010443.1 Protein Homology CDS 3771490 3772371 . - 0 ID=cds3616;Parent=gene3712;Dbxref=Genbank:WP_000808991.1;Name=WP_000808991.1;Note=catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA;gbkey=CDS;product=peptide chain release factor 2;protein_id=WP_000808991.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3772679 3774412 . - . ID=gene3713;Name=SH04_RS18615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18615;old_locus_tag=SH04_18625 NZ_CP010443.1 Protein Homology CDS 3772679 3774412 . - 0 ID=cds3617;Parent=gene3713;Dbxref=Genbank:WP_000813200.1;Name=WP_000813200.1;Note=5'-3' single-stranded-DNA-specific exonuclease;gbkey=CDS;product=single-stranded-DNA-specific exonuclease RecJ;protein_id=WP_000813200.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3774418 3775128 . - . ID=gene3714;Name=SH04_RS18620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18620;old_locus_tag=SH04_18630 NZ_CP010443.1 Protein Homology CDS 3774418 3775128 . - 0 ID=cds3618;Parent=gene3714;Dbxref=Genbank:WP_000715214.1;Name=WP_000715214.1;Note=DsbC%3B periplasmic protein with protein disulfide isomerase activity%3B this protein also shows disulfide oxidoreductase activity;gbkey=CDS;product=thiol:disulfide interchange protein DsbC;protein_id=WP_000715214.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3775153 3776049 . - . ID=gene3715;Name=xerD;gbkey=Gene;gene=xerD;gene_biotype=protein_coding;locus_tag=SH04_RS18625;old_locus_tag=SH04_18635 NZ_CP010443.1 Protein Homology CDS 3775153 3776049 . - 0 ID=cds3619;Parent=gene3715;Dbxref=Genbank:WP_000806638.1;Name=WP_000806638.1;Note=site-specific tyrosine recombinase which cuts and rejoins DNA molecules%3B binds cooperatively to specific DNA consensus sites%3B forms a heterotetrameric complex with XerC%3B XerCD exhibit similar sequences%3B essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation%3B XerD specifically exchanges the bottom strands%3B cell division protein FtsK may regulate the XerCD complex%3B enzyme from Streptococcus group has unusual active site motifs;gbkey=CDS;gene=xerD;product=tyrosine recombinase XerD;protein_id=WP_000806638.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3776161 3776682 . + . ID=gene3716;Name=SH04_RS18630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18630;old_locus_tag=SH04_18640 NZ_CP010443.1 Protein Homology CDS 3776161 3776682 . + 0 ID=cds3620;Parent=gene3716;Dbxref=Genbank:WP_001055874.1;Name=WP_001055874.1;Note=An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic;gbkey=CDS;product=flavodoxin-2;protein_id=WP_001055874.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3776722 3777129 . - . ID=gene3717;Name=SH04_RS18635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18635;old_locus_tag=SH04_18645 NZ_CP010443.1 Protein Homology CDS 3776722 3777129 . - 0 ID=cds3621;Parent=gene3717;Dbxref=Genbank:WP_000244777.1;Name=WP_000244777.1;gbkey=CDS;product=toxin CptA;protein_id=WP_000244777.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3777146 3777376 . - . ID=gene3718;Name=SH04_RS18640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18640 NZ_CP010443.1 Protein Homology CDS 3777146 3777376 . - 0 ID=cds3622;Parent=gene3718;Dbxref=Genbank:WP_046377553.1;Name=WP_046377553.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_046377553.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3777619 3778599 . + . ID=gene3719;Name=ygfZ;gbkey=Gene;gene=ygfZ;gene_biotype=protein_coding;locus_tag=SH04_RS18645;old_locus_tag=SH04_18655 NZ_CP010443.1 Protein Homology CDS 3777619 3778599 . + 0 ID=cds3623;Parent=gene3719;Dbxref=Genbank:WP_000886062.1;Name=WP_000886062.1;Note=physiological role is not clear%3B not essential for growth but mutants grow poorly%3B mutations suppress hda null mutations%3B may be involved in regulation of ATP-DnaA levels%3B may also be involved in regulation of tRNA modifications%3B can bind folic acid and tetrahydrofolate%3B forms a three domain ring-like structure with a central channel%3B structurally similar to DMGO protein from A. globiformis%3B shows sequence similarity to yeast CAF17 transcriptional regulato%3B Hda supressor;gbkey=CDS;gene=ygfZ;product=tRNA-modifying protein YgfZ;protein_id=WP_000886062.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3778795 3779454 . - . ID=gene3720;Name=SH04_RS18650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18650;old_locus_tag=SH04_18660 NZ_CP010443.1 Protein Homology CDS 3778795 3779454 . - 0 ID=cds3624;Parent=gene3720;Dbxref=Genbank:WP_000250274.1;Name=WP_000250274.1;gbkey=CDS;product=hemolysin;protein_id=WP_000250274.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3779618 3779929 . - . ID=gene3721;Name=SH04_RS18655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18655;old_locus_tag=SH04_18665 NZ_CP010443.1 Protein Homology CDS 3779618 3779929 . - 0 ID=cds3625;Parent=gene3721;Dbxref=Genbank:WP_001182957.1;Name=WP_001182957.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001182957.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3779974 3781407 . + . ID=gene3722;Name=SH04_RS18660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18660;old_locus_tag=SH04_18670 NZ_CP010443.1 Protein Homology CDS 3779974 3781407 . + 0 ID=cds3626;Parent=gene3722;Dbxref=Genbank:WP_001336277.1;Name=WP_001336277.1;gbkey=CDS;product=6-phospho-beta-glucosidase;protein_id=WP_001336277.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3781464 3782207 . - . ID=gene3723;Name=SH04_RS18665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18665;old_locus_tag=SH04_18675 NZ_CP010443.1 Protein Homology CDS 3781464 3782207 . - 0 ID=cds3627;Parent=gene3723;Dbxref=Genbank:WP_000951964.1;Name=WP_000951964.1;gbkey=CDS;product=NAD(P)-dependent oxidoreductase;protein_id=WP_000951964.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3782474 3785347 . - . ID=gene3724;Name=SH04_RS18670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18670;old_locus_tag=SH04_18680 NZ_CP010443.1 Protein Homology CDS 3782474 3785347 . - 0 ID=cds3628;Parent=gene3724;Dbxref=Genbank:WP_000195062.1;Name=WP_000195062.1;Note=acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine;gbkey=CDS;product=glycine dehydrogenase (decarboxylating);protein_id=WP_000195062.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3785466 3785855 . - . ID=gene3725;Name=SH04_RS18675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18675;old_locus_tag=SH04_18685 NZ_CP010443.1 Protein Homology CDS 3785466 3785855 . - 0 ID=cds3629;Parent=gene3725;Dbxref=Genbank:WP_001295377.1;Name=WP_001295377.1;Note=part of multienzyme complex composed of H%2C L%2C P%2C and T proteins which catalyzes oxidation of glycine to yield carbon dioxide%2C ammonia%2C 5%2C10-CH2-H4folate and a reduced pyridine nucleotide%3B protein H is involved in transfer of methylamine group from the P to T protein%3B covalently bound to a lipoyl cofactor;gbkey=CDS;product=glycine cleavage system protein H;protein_id=WP_001295377.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3785879 3786973 . - . ID=gene3726;Name=gcvT;gbkey=Gene;gene=gcvT;gene_biotype=protein_coding;locus_tag=SH04_RS18680;old_locus_tag=SH04_18690 NZ_CP010443.1 Protein Homology CDS 3785879 3786973 . - 0 ID=cds3630;Parent=gene3726;Dbxref=Genbank:WP_000068701.1;Name=WP_000068701.1;Note=catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate%2C causing the release of ammonia and the generation of reduced GcvH protein;gbkey=CDS;gene=gcvT;product=aminomethyltransferase;protein_id=WP_000068701.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3787421 3788623 . - . ID=gene3727;Name=SH04_RS18685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18685;old_locus_tag=SH04_18695 NZ_CP010443.1 Protein Homology CDS 3787421 3788623 . - 0 ID=cds3631;Parent=gene3727;Dbxref=Genbank:WP_001192229.1;Name=WP_001192229.1;gbkey=CDS;product=2-octaprenylphenol hydroxylase;protein_id=WP_001192229.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3788646 3789824 . - . ID=gene3728;Name=SH04_RS18690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18690;old_locus_tag=SH04_18700 NZ_CP010443.1 Protein Homology CDS 3788646 3789824 . - 0 ID=cds3632;Parent=gene3728;Dbxref=Genbank:WP_000111195.1;Name=WP_000111195.1;Note=Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1%2C4-benzoquinone;gbkey=CDS;product=2-octaprenyl-6-methoxyphenol hydroxylase;protein_id=WP_000111195.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3789821 3791146 . - . ID=gene3729;Name=SH04_RS18695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18695;old_locus_tag=SH04_18705 NZ_CP010443.1 Protein Homology CDS 3789821 3791146 . - 0 ID=cds3633;Parent=gene3729;Dbxref=Genbank:WP_001290136.1;Name=WP_001290136.1;Note=exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue%3B substrate can be as short as a dipeptide;gbkey=CDS;product=Xaa-Pro aminopeptidase;protein_id=WP_001290136.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3791172 3791756 . - . ID=gene3730;Name=SH04_RS18700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18700;old_locus_tag=SH04_18710 NZ_CP010443.1 Protein Homology CDS 3791172 3791756 . - 0 ID=cds3634;Parent=gene3730;Dbxref=Genbank:WP_000930123.1;Name=WP_000930123.1;Note=the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers%3B function unknown;gbkey=CDS;product=hypothetical protein;protein_id=WP_000930123.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3791918 3792247 . + . ID=gene3731;Name=SH04_RS18705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18705;old_locus_tag=SH04_18715 NZ_CP010443.1 Protein Homology CDS 3791918 3792247 . + 0 ID=cds3635;Parent=gene3731;Dbxref=Genbank:WP_001276008.1;Name=WP_001276008.1;gbkey=CDS;product=cell division protein ZapA;protein_id=WP_001276008.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3792493 3793095 . + . ID=gene3732;Name=SH04_RS18710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18710;old_locus_tag=SH04_18720 NZ_CP010443.1 Protein Homology CDS 3792493 3793095 . + 0 ID=cds3636;Parent=gene3732;Dbxref=Genbank:WP_000192748.1;Name=WP_000192748.1;Note=ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms%3B unknown function;gbkey=CDS;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=WP_000192748.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3793484 3794716 . - . ID=gene3733;Name=SH04_RS18715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18715;old_locus_tag=SH04_18725 NZ_CP010443.1 Protein Homology CDS 3793484 3794716 . - 0 ID=cds3637;Parent=gene3733;Dbxref=Genbank:WP_001151604.1;Name=WP_001151604.1;Note=catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis%3B can also reduce alpha ketoglutarate to form 2-hydroxyglutarate;gbkey=CDS;product=D-3-phosphoglycerate dehydrogenase;protein_id=WP_001151604.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3794972 3795631 . - . ID=gene3734;Name=SH04_RS18720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18720;old_locus_tag=SH04_18730 NZ_CP010443.1 Protein Homology CDS 3794972 3795631 . - 0 ID=cds3638;Parent=gene3734;Dbxref=Genbank:WP_000189743.1;Name=WP_000189743.1;Note=catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway;gbkey=CDS;product=ribose-5-phosphate isomerase A;protein_id=WP_000189743.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3795687 3795917 . - . ID=gene3735;Name=SH04_RS18725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18725;old_locus_tag=SH04_18735 NZ_CP010443.1 Protein Homology CDS 3795687 3795917 . - 0 ID=cds3639;Parent=gene3735;Dbxref=Genbank:WP_000545308.1;Name=WP_000545308.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000545308.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3796059 3796952 . + . ID=gene3736;Name=SH04_RS18730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18730;old_locus_tag=SH04_18740 NZ_CP010443.1 Protein Homology CDS 3796059 3796952 . + 0 ID=cds3640;Parent=gene3736;Dbxref=Genbank:WP_000828351.1;Name=WP_000828351.1;Note=specific inhibitor of chromosomal initiation of replication in vitro%3B binds the three 13-mers in the origin (oriC) to block initiation of replication%3B also controls genes involved in arginine transport;gbkey=CDS;product=chromosome initiation inhibitor;protein_id=WP_000828351.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3797156 3799300 . + . ID=gene3737;Name=SH04_RS18735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18735;old_locus_tag=SH04_18745 NZ_CP010443.1 Protein Homology CDS 3797156 3799300 . + 0 ID=cds3641;Parent=gene3737;Dbxref=Genbank:WP_000073223.1;Name=WP_000073223.1;gbkey=CDS;product=methylmalonyl-CoA mutase;protein_id=WP_000073223.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3799293 3800288 . + . ID=gene3738;Name=SH04_RS18740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18740;old_locus_tag=SH04_18750 NZ_CP010443.1 Protein Homology CDS 3799293 3800288 . + 0 ID=cds3642;Parent=gene3738;Dbxref=Genbank:WP_000606525.1;Name=WP_000606525.1;gbkey=CDS;product=GTPase ArgK;protein_id=WP_000606525.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3800299 3801084 . + . ID=gene3739;Name=SH04_RS18745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18745;old_locus_tag=SH04_18755 NZ_CP010443.1 Protein Homology CDS 3800299 3801084 . + 0 ID=cds3643;Parent=gene3739;Dbxref=Genbank:WP_000122080.1;Name=WP_000122080.1;Note=catalyzes the formation of propanoyl-CoA from methylmalonyl-CoA;gbkey=CDS;product=methylmalonyl-CoA decarboxylase;protein_id=WP_000122080.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3801108 3802586 . + . ID=gene3740;Name=SH04_RS18750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18750;old_locus_tag=SH04_18760 NZ_CP010443.1 Protein Homology CDS 3801108 3802586 . + 0 ID=cds3644;Parent=gene3740;Dbxref=Genbank:WP_000449965.1;Name=WP_000449965.1;gbkey=CDS;product=propionyl-CoA--succinate CoA transferase;protein_id=WP_000449965.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3802583 3803479 . - . ID=gene3741;Name=SH04_RS18755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18755;old_locus_tag=SH04_18765 NZ_CP010443.1 Protein Homology CDS 3802583 3803479 . - 0 ID=cds3645;Parent=gene3741;Dbxref=Genbank:WP_000350807.1;Name=WP_000350807.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000350807.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3803646 3804386 . - . ID=gene3742;Name=SH04_RS18760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18760;old_locus_tag=SH04_18770 NZ_CP010443.1 Protein Homology CDS 3803646 3804386 . - 0 ID=cds3646;Parent=gene3742;Dbxref=Genbank:WP_000669834.1;Name=WP_000669834.1;gbkey=CDS;product=oxidative stress defense protein;protein_id=WP_000669834.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3804479 3805072 . - . ID=gene3743;Name=SH04_RS18765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18765;old_locus_tag=SH04_18775 NZ_CP010443.1 Protein Homology CDS 3804479 3805072 . - 0 ID=cds3647;Parent=gene3743;Dbxref=Genbank:WP_001326499.1;Name=WP_001326499.1;Note=Involved in the export of arginine;gbkey=CDS;product=arginine exporter protein;protein_id=WP_001326499.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3805253 3806113 . - . ID=gene3744;Name=SH04_RS18770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18770;old_locus_tag=SH04_18780 NZ_CP010443.1 Protein Homology CDS 3805253 3806113 . - 0 ID=cds3648;Parent=gene3744;Dbxref=Genbank:WP_000389818.1;Name=WP_000389818.1;Note=participates in the regulation of osmotic pressure changes within the cel;gbkey=CDS;product=small-conductance mechanosensitive channel;protein_id=WP_000389818.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3806471 3807550 . - . ID=gene3745;Name=SH04_RS18775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18775;old_locus_tag=SH04_18785 NZ_CP010443.1 Protein Homology CDS 3806471 3807550 . - 0 ID=cds3649;Parent=gene3745;Dbxref=Genbank:WP_000034372.1;Name=WP_000034372.1;Note=catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1%2C6%2C bisphosphate;gbkey=CDS;product=fructose-bisphosphate aldolase;protein_id=WP_000034372.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 3807576 3807704 . + . ID=id201;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3807765 3808928 . - . ID=gene3746;Name=SH04_RS18780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18780;old_locus_tag=SH04_18790 NZ_CP010443.1 Protein Homology CDS 3807765 3808928 . - 0 ID=cds3650;Parent=gene3746;Dbxref=Genbank:WP_000111269.1;Name=WP_000111269.1;gbkey=CDS;product=phosphoglycerate kinase;protein_id=WP_000111269.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3808978 3809997 . - . ID=gene3747;Name=gapA;gbkey=Gene;gene=gapA;gene_biotype=protein_coding;locus_tag=SH04_RS18785;old_locus_tag=SH04_18795 NZ_CP010443.1 Protein Homology CDS 3808978 3809997 . - 0 ID=cds3651;Parent=gene3747;Dbxref=Genbank:WP_000218480.1;Name=WP_000218480.1;Note=required for glycolysis%3B catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate;gbkey=CDS;gene=gapA;product=D-erythrose-4-phosphate dehydrogenase;protein_id=WP_000218480.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3810282 3810995 . - . ID=gene3748;Name=SH04_RS18790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18790;old_locus_tag=SH04_18800 NZ_CP010443.1 Protein Homology CDS 3810282 3810995 . - 0 ID=cds3652;Parent=gene3748;Dbxref=Genbank:WP_000687705.1;Name=WP_000687705.1;gbkey=CDS;product=PanK family P-loop kinase;protein_id=WP_000687705.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3810992 3811501 . - . ID=gene3749;Name=SH04_RS18795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18795;old_locus_tag=SH04_18805 NZ_CP010443.1 Protein Homology CDS 3810992 3811501 . - 0 ID=cds3653;Parent=gene3749;Dbxref=Genbank:WP_000224147.1;Name=WP_000224147.1;gbkey=CDS;product=MtlR family transcriptional regulator;protein_id=WP_000224147.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3811523 3812488 . - . ID=gene3750;Name=SH04_RS18800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18800;old_locus_tag=SH04_18810 NZ_CP010443.1 Protein Homology CDS 3811523 3812488 . - 0 ID=cds3654;Parent=gene3750;Dbxref=Genbank:WP_000987283.1;Name=WP_000987283.1;gbkey=CDS;product=fructose 1%2C6-bisphosphatase;protein_id=WP_000987283.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3812485 3813762 . - . ID=gene3751;Name=SH04_RS18805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18805;old_locus_tag=SH04_18815 NZ_CP010443.1 Protein Homology CDS 3812485 3813762 . - 0 ID=cds3655;Parent=gene3751;Dbxref=Genbank:WP_000853247.1;Name=WP_000853247.1;gbkey=CDS;product=Zn-binding dehydrogenase;protein_id=WP_000853247.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3813777 3815165 . - . ID=gene3752;Name=SH04_RS18810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18810;old_locus_tag=SH04_18820 NZ_CP010443.1 Protein Homology CDS 3813777 3815165 . - 0 ID=cds3656;Parent=gene3752;Dbxref=Genbank:WP_000428805.1;Name=WP_000428805.1;Note=CmtA with CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system%2C which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli%3B cytoplasmic protein;gbkey=CDS;product=PTS mannitol cryptic EIICB component;protein_id=WP_000428805.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3815193 3815636 . - . ID=gene3753;Name=cmtB;gbkey=Gene;gene=cmtB;gene_biotype=protein_coding;locus_tag=SH04_RS18815;old_locus_tag=SH04_18825 NZ_CP010443.1 Protein Homology CDS 3815193 3815636 . - 0 ID=cds3657;Parent=gene3753;Dbxref=Genbank:WP_001239650.1;Name=WP_001239650.1;Note=TolM%3B with CmtA (IIBC)%2C CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system%2C which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli%3B cytoplasmic protein;gbkey=CDS;gene=cmtB;product=mannitol-specific cryptic phosphotransferase enzyme IIA component;protein_id=WP_001239650.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3815950 3817941 . - . ID=gene3754;Name=SH04_RS18820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18820;old_locus_tag=SH04_18830 NZ_CP010443.1 Protein Homology CDS 3815950 3817941 . - 0 ID=cds3658;Parent=gene3754;Dbxref=Genbank:WP_000098614.1;Name=WP_000098614.1;Note=catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate%3B can transfer ketol groups between several groups%3B in Escherichia coli there are two tkt genes%2C tktA expressed during exponential growth and the tktB during stationary phase;gbkey=CDS;product=transketolase;protein_id=WP_000098614.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3818219 3818977 . + . ID=gene3755;Name=SH04_RS18825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18825;old_locus_tag=SH04_18835 NZ_CP010443.1 Protein Homology CDS 3818219 3818977 . + 0 ID=cds3659;Parent=gene3755;Dbxref=Genbank:WP_001326497.1;Name=WP_001326497.1;gbkey=CDS;product=metalloprotease LoiP;protein_id=WP_001326497.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3819183 3820103 . - . ID=gene3756;Name=SH04_RS18830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18830;old_locus_tag=SH04_18840 NZ_CP010443.1 Protein Homology CDS 3819183 3820103 . - 0 ID=cds3660;Parent=gene3756;Dbxref=Genbank:WP_000105566.1;Name=WP_000105566.1;Note=catalyzes the formation of putrescine from agmatine;gbkey=CDS;product=agmatinase;protein_id=WP_000105566.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3820241 3822217 . - . ID=gene3757;Name=SH04_RS18835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18835;old_locus_tag=SH04_18845 NZ_CP010443.1 Protein Homology CDS 3820241 3822217 . - 0 ID=cds3661;Parent=gene3757;Dbxref=Genbank:WP_001300904.1;Name=WP_001300904.1;Note=catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis;gbkey=CDS;product=biosynthetic arginine decarboxylase;protein_id=WP_001300904.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3822226 3822357 . - . ID=gene3758;Name=SH04_RS18840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18840;old_locus_tag=SH04_18850 NZ_CP010443.1 Protein Homology CDS 3822226 3822357 . - 0 ID=cds3662;Parent=gene3758;Dbxref=Genbank:WP_001297406.1;Name=WP_001297406.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001297406.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3822493 3822708 . + . ID=gene3759;Name=SH04_RS18845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18845;old_locus_tag=SH04_18855 NZ_CP010443.1 Protein Homology CDS 3822493 3822708 . + 0 ID=cds3663;Parent=gene3759;Dbxref=Genbank:WP_001303650.1;Name=WP_001303650.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303650.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3822705 3822956 . - . ID=gene3760;Name=SH04_RS18850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18850;old_locus_tag=SH04_18860 NZ_CP010443.1 Protein Homology CDS 3822705 3822956 . - 0 ID=cds3664;Parent=gene3760;Dbxref=Genbank:WP_001326496.1;Name=WP_001326496.1;gbkey=CDS;product=membrane protein;protein_id=WP_001326496.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3823012 3824166 . + . ID=gene3761;Name=SH04_RS18855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18855;old_locus_tag=SH04_18865 NZ_CP010443.1 Protein Homology CDS 3823012 3824166 . + 0 ID=cds3665;Parent=gene3761;Dbxref=Genbank:WP_001062128.1;Name=WP_001062128.1;Note=catalyzes the formation of S-adenosylmethionine from methionine and ATP%3B methionine adenosyltransferase;gbkey=CDS;product=S-adenosylmethionine synthase;protein_id=WP_001062128.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3824590 3825984 . + . ID=gene3762;Name=SH04_RS18860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS18860;pseudo=true NZ_CP010443.1 Protein Homology CDS 3824590 3825984 . + 0 ID=cds3666;Parent=gene3762;gbkey=CDS;product=D-galactose transporter GalP;pseudo=true;transl_except=(pos:3825415..3825417%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 3826061 3826558 . + . ID=gene3763;Name=SH04_RS18865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18865;old_locus_tag=SH04_18875 NZ_CP010443.1 Protein Homology CDS 3826061 3826558 . + 0 ID=cds3667;Parent=gene3763;Dbxref=Genbank:WP_001300769.1;Name=WP_001300769.1;gbkey=CDS;product=protein SprT;protein_id=WP_001300769.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3826653 3827360 . + . ID=gene3764;Name=SH04_RS18870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18870;old_locus_tag=SH04_18880 NZ_CP010443.1 Protein Homology CDS 3826653 3827360 . + 0 ID=cds3668;Parent=gene3764;Dbxref=Genbank:WP_000286500.1;Name=WP_000286500.1;gbkey=CDS;product=endonuclease-1;protein_id=WP_000286500.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3827440 3828171 . + . ID=gene3765;Name=SH04_RS18875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18875;old_locus_tag=SH04_18885 NZ_CP010443.1 Protein Homology CDS 3827440 3828171 . + 0 ID=cds3669;Parent=gene3765;Dbxref=Genbank:WP_001222509.1;Name=WP_001222509.1;Note=in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA%3B cells lacking this function can grow%2C but are outcompeted by wild-type%3B SAM-dependent m(3)U1498 methyltransferase;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase E;protein_id=WP_001222509.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3828184 3829134 . + . ID=gene3766;Name=SH04_RS18880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18880;old_locus_tag=SH04_18890 NZ_CP010443.1 Protein Homology CDS 3828184 3829134 . + 0 ID=cds3670;Parent=gene3766;Dbxref=Genbank:WP_000593273.1;Name=WP_000593273.1;Note=catalyzes the second step in the glutathione biosynthesis pathway%2C where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine %3D ADP + phosphate + glutathione;gbkey=CDS;product=glutathione synthetase;protein_id=WP_000593273.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3829243 3829806 . + . ID=gene3767;Name=SH04_RS18885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18885;old_locus_tag=SH04_18895 NZ_CP010443.1 Protein Homology CDS 3829243 3829806 . + 0 ID=cds3671;Parent=gene3767;Dbxref=Genbank:WP_001053178.1;Name=WP_001053178.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001053178.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3829806 3830222 . + . ID=gene3768;Name=SH04_RS18890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18890;old_locus_tag=SH04_18900 NZ_CP010443.1 Protein Homology CDS 3829806 3830222 . + 0 ID=cds3672;Parent=gene3768;Dbxref=Genbank:WP_000017106.1;Name=WP_000017106.1;Note=similar to RuvC resolvase with substantial differences%3B NMR structural information suggests this protein is monomeric%3B unknown cellular function;gbkey=CDS;product=Holliday junction DNA helicase;protein_id=WP_000017106.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3830406 3831386 . - . ID=gene3769;Name=SH04_RS18895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18895;old_locus_tag=SH04_18905 NZ_CP010443.1 Protein Homology CDS 3830406 3831386 . - 0 ID=cds3673;Parent=gene3769;Dbxref=Genbank:WP_001326494.1;Name=WP_001326494.1;gbkey=CDS;product=PilT family AAA+ ATPase;protein_id=WP_001326494.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3831404 3832108 . + . ID=gene3770;Name=SH04_RS18900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18900;old_locus_tag=SH04_18910 NZ_CP010443.1 Protein Homology CDS 3831404 3832108 . + 0 ID=cds3674;Parent=gene3770;Dbxref=Genbank:WP_000997795.1;Name=WP_000997795.1;gbkey=CDS;product=YggS family pyridoxal phosphate enzyme;protein_id=WP_000997795.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3832126 3832692 . + . ID=gene3771;Name=SH04_RS18905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18905;old_locus_tag=SH04_18915 NZ_CP010443.1 Protein Homology CDS 3832126 3832692 . + 0 ID=cds3675;Parent=gene3771;Dbxref=Genbank:WP_001094831.1;Name=WP_001094831.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001094831.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3832689 3832979 . + . ID=gene3772;Name=SH04_RS18910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18910;old_locus_tag=SH04_18920 NZ_CP010443.1 Protein Homology CDS 3832689 3832979 . + 0 ID=cds3676;Parent=gene3772;Dbxref=Genbank:WP_000994920.1;Name=WP_000994920.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000994920.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3832987 3833580 . + . ID=gene3773;Name=SH04_RS18915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18915;old_locus_tag=SH04_18925 NZ_CP010443.1 Protein Homology CDS 3832987 3833580 . + 0 ID=cds3677;Parent=gene3773;Dbxref=Genbank:WP_001174777.1;Name=WP_001174777.1;Note=HAM1-like protein%3B Rec-dependent growth%3B RgdB%3B yggV%3B it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine;gbkey=CDS;product=non-canonical purine NTP pyrophosphatase;protein_id=WP_001174777.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3833573 3834709 . + . ID=gene3774;Name=SH04_RS18920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18920;old_locus_tag=SH04_18930 NZ_CP010443.1 Protein Homology CDS 3833573 3834709 . + 0 ID=cds3678;Parent=gene3774;Dbxref=Genbank:WP_000239943.1;Name=WP_000239943.1;gbkey=CDS;product=coproporphyrinogen III oxidase;protein_id=WP_000239943.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3834864 3835871 . - . ID=gene3775;Name=SH04_RS18925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18925;old_locus_tag=SH04_18935 NZ_CP010443.1 Protein Homology CDS 3834864 3835871 . - 0 ID=cds3679;Parent=gene3775;Dbxref=Genbank:WP_000745210.1;Name=WP_000745210.1;gbkey=CDS;product=DUF1202 domain-containing protein;protein_id=WP_000745210.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3835988 3837034 . - . ID=gene3776;Name=ansB;gbkey=Gene;gene=ansB;gene_biotype=protein_coding;locus_tag=SH04_RS18930;old_locus_tag=SH04_18940 NZ_CP010443.1 Protein Homology CDS 3835988 3837034 . - 0 ID=cds3680;Parent=gene3776;Dbxref=Genbank:WP_000394140.1;Name=WP_000394140.1;Note=catalyzes the formation of aspartate from asparagine%2C periplasmic%3B regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis;gbkey=CDS;gene=ansB;product=L-asparaginase 2;protein_id=WP_000394140.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3837210 3837929 . - . ID=gene3777;Name=SH04_RS18935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18935;old_locus_tag=SH04_18945 NZ_CP010443.1 Protein Homology CDS 3837210 3837929 . - 0 ID=cds3681;Parent=gene3777;Dbxref=Genbank:WP_000984796.1;Name=WP_000984796.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000984796.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3837950 3838090 . - . ID=gene3778;Name=SH04_RS18940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18940;old_locus_tag=SH04_18950 NZ_CP010443.1 Protein Homology CDS 3837950 3838090 . - 0 ID=cds3682;Parent=gene3778;Dbxref=Genbank:WP_001178593.1;Name=WP_001178593.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001178593.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3838113 3838439 . - . ID=gene3779;Name=SH04_RS18945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18945;old_locus_tag=SH04_18955 NZ_CP010443.1 Protein Homology CDS 3838113 3838439 . - 0 ID=cds3683;Parent=gene3779;Dbxref=Genbank:WP_001107564.1;Name=WP_001107564.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001107564.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3838439 3839158 . - . ID=gene3780;Name=trmB;gbkey=Gene;gene=trmB;gene_biotype=protein_coding;gene_synonym=yggH;locus_tag=SH04_RS18950;old_locus_tag=SH04_18960 NZ_CP010443.1 Protein Homology CDS 3838439 3839158 . - 0 ID=cds3684;Parent=gene3780;Dbxref=Genbank:WP_000786911.1;Name=WP_000786911.1;Note=tRNA (guanine-N(7)-)-methyltransferase%3B catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine;gbkey=CDS;gene=trmB;product=tRNA (guanine-N(7)-)-methyltransferase;protein_id=WP_000786911.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3839319 3840371 . + . ID=gene3781;Name=SH04_RS18955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18955;old_locus_tag=SH04_18965 NZ_CP010443.1 Protein Homology CDS 3839319 3840371 . + 0 ID=cds3685;Parent=gene3781;Dbxref=Genbank:WP_001321419.1;Name=WP_001321419.1;gbkey=CDS;product=A/G-specific adenine glycosylase;protein_id=WP_001321419.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3840399 3840674 . + . ID=gene3782;Name=SH04_RS18960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18960;old_locus_tag=SH04_18970 NZ_CP010443.1 Protein Homology CDS 3840399 3840674 . + 0 ID=cds3686;Parent=gene3782;Dbxref=Genbank:WP_000091700.1;Name=WP_000091700.1;Note=protects iron-sulfur proteins against oxidative damage;gbkey=CDS;product=Fe(2+)-trafficking protein;protein_id=WP_000091700.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3840739 3841818 . + . ID=gene3783;Name=mltC;gbkey=Gene;gene=mltC;gene_biotype=protein_coding;locus_tag=SH04_RS18965;old_locus_tag=SH04_18975 NZ_CP010443.1 Protein Homology CDS 3840739 3841818 . + 0 ID=cds3687;Parent=gene3783;Dbxref=Genbank:WP_000760323.1;Name=WP_000760323.1;Note=Murein hydrolase C%3B membrane-bound%3B lytic%3B catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues;gbkey=CDS;gene=mltC;product=murein transglycosylase;protein_id=WP_000760323.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3842020 3843276 . + . ID=gene3784;Name=SH04_RS18970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18970;old_locus_tag=SH04_18980 NZ_CP010443.1 Protein Homology CDS 3842020 3843276 . + 0 ID=cds3688;Parent=gene3784;Dbxref=Genbank:WP_001049791.1;Name=WP_001049791.1;gbkey=CDS;product=nucleoside permease NupG;protein_id=WP_001049791.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3843326 3845461 . - . ID=gene3785;Name=SH04_RS18975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18975;old_locus_tag=SH04_18985 NZ_CP010443.1 Protein Homology CDS 3843326 3845461 . - 0 ID=cds3689;Parent=gene3785;Dbxref=Genbank:WP_001326492.1;Name=WP_001326492.1;gbkey=CDS;product=ornithine decarboxylase;protein_id=WP_001326492.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3845859 3846566 . + . ID=gene3786;Name=SH04_RS18980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18980;old_locus_tag=SH04_18990 NZ_CP010443.1 Protein Homology CDS 3845859 3846566 . + 0 ID=cds3690;Parent=gene3786;Dbxref=Genbank:WP_000234514.1;Name=WP_000234514.1;gbkey=CDS;product=DUF554 domain-containing protein;protein_id=WP_000234514.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3846672 3846747 . + . ID=gene3787;Name=SH04_RS18985;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS18985;old_locus_tag=SH04_18995 NZ_CP010443.1 tRNAscan-SE tRNA 3846672 3846747 . + . ID=rna96;Parent=gene3787;anticodon=(pos:3846705..3846707);gbkey=tRNA;product=tRNA-Phe NZ_CP010443.1 tRNAscan-SE exon 3846672 3846747 . + . ID=id202;Parent=rna96;anticodon=(pos:3846705..3846707);gbkey=tRNA;product=tRNA-Phe NZ_CP010443.1 RefSeq gene 3846896 3847432 . - . ID=gene3788;Name=SH04_RS18990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18990;old_locus_tag=SH04_19000 NZ_CP010443.1 Protein Homology CDS 3846896 3847432 . - 0 ID=cds3691;Parent=gene3788;Dbxref=Genbank:WP_000942785.1;Name=WP_000942785.1;gbkey=CDS;product=membrane-anchored secretion pathway M-type protein;protein_id=WP_000942785.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3847434 3848294 . - . ID=gene3789;Name=SH04_RS18995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS18995;old_locus_tag=SH04_19005 NZ_CP010443.1 Protein Homology CDS 3847434 3848294 . - 0 ID=cds3692;Parent=gene3789;Dbxref=Genbank:WP_001393563.1;Name=WP_001393563.1;gbkey=CDS;product=type II secretion system protein GspL;protein_id=WP_001393563.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3848360 3849355 . - . ID=gene3790;Name=SH04_RS19000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19000;old_locus_tag=SH04_19010 NZ_CP010443.1 Protein Homology CDS 3848360 3849355 . - 0 ID=cds3693;Parent=gene3790;Dbxref=Genbank:WP_000135077.1;Name=WP_000135077.1;Note=part of the general (type II) secretion pathway (GSP)%2C a signal sequence-dependent process responsible for protein export%3B involved in trans-location of exoproteins from the cytoplasm to the periplasm;gbkey=CDS;product=type II secretion system protein GspC;protein_id=WP_000135077.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3849373 3849783 . - . ID=gene3791;Name=SH04_RS19005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19005;old_locus_tag=SH04_19015 NZ_CP010443.1 Protein Homology CDS 3849373 3849783 . - 0 ID=cds3694;Parent=gene3791;Dbxref=Genbank:WP_001324279.1;Name=WP_001324279.1;gbkey=CDS;product=secretin (GspDbeta) OM localization lipoprotein pilotin;protein_id=WP_001324279.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3849849 3850658 . - . ID=gene3792;Name=SH04_RS19010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19010;old_locus_tag=SH04_19020 NZ_CP010443.1 Protein Homology CDS 3849849 3850658 . - 0 ID=cds3695;Parent=gene3792;Dbxref=Genbank:WP_001333829.1;Name=WP_001333829.1;gbkey=CDS;product=leader peptidase PppA;protein_id=WP_001333829.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3850856 3855418 . - . ID=gene3793;Name=SH04_RS19015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19015;old_locus_tag=SH04_19025 NZ_CP010443.1 Protein Homology CDS 3850856 3855418 . - 0 ID=cds3696;Parent=gene3793;Dbxref=Genbank:WP_001034469.1;Name=WP_001034469.1;gbkey=CDS;product=and surface-associated lipoprotein mucinase;protein_id=WP_001034469.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3855569 3855751 . + . ID=gene3794;Name=SH04_RS19020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19020;old_locus_tag=SH04_19030 NZ_CP010443.1 Protein Homology CDS 3855569 3855751 . + 0 ID=cds3697;Parent=gene3794;Dbxref=Genbank:WP_001311126.1;Name=WP_001311126.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001311126.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3855903 3857585 . - . ID=gene3795;Name=SH04_RS19025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19025;old_locus_tag=SH04_19035 NZ_CP010443.1 Protein Homology CDS 3855903 3857585 . - 0 ID=cds3698;Parent=gene3795;Dbxref=Genbank:WP_000259302.1;Name=WP_000259302.1;gbkey=CDS;product=glycolate permease GlcA;protein_id=WP_000259302.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3857940 3860111 . - . ID=gene3796;Name=SH04_RS19030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19030;old_locus_tag=SH04_19040 NZ_CP010443.1 Protein Homology CDS 3857940 3860111 . - 0 ID=cds3699;Parent=gene3796;Dbxref=Genbank:WP_000084131.1;Name=WP_000084131.1;gbkey=CDS;product=malate synthase G;protein_id=WP_000084131.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3860133 3860537 . - . ID=gene3797;Name=SH04_RS19035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19035;old_locus_tag=SH04_19045 NZ_CP010443.1 Protein Homology CDS 3860133 3860537 . - 0 ID=cds3700;Parent=gene3797;Dbxref=Genbank:WP_000853256.1;Name=WP_000853256.1;gbkey=CDS;product=protein GlcG;protein_id=WP_000853256.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3860542 3861765 . - . ID=gene3798;Name=glcF;gbkey=Gene;gene=glcF;gene_biotype=protein_coding;locus_tag=SH04_RS19040;old_locus_tag=SH04_19050 NZ_CP010443.1 Protein Homology CDS 3860542 3861765 . - 0 ID=cds3701;Parent=gene3798;Dbxref=Genbank:WP_001194661.1;Name=WP_001194661.1;gbkey=CDS;gene=glcF;product=glycolate oxidase;protein_id=WP_001194661.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3861776 3862828 . - . ID=gene3799;Name=glcE;gbkey=Gene;gene=glcE;gene_biotype=protein_coding;locus_tag=SH04_RS19045;old_locus_tag=SH04_19055 NZ_CP010443.1 Protein Homology CDS 3861776 3862828 . - 0 ID=cds3702;Parent=gene3799;Dbxref=Genbank:WP_000943100.1;Name=WP_000943100.1;gbkey=CDS;gene=glcE;product=glycolate oxidase;protein_id=WP_000943100.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3862828 3864327 . - . ID=gene3800;Name=SH04_RS19050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19050;old_locus_tag=SH04_19060 NZ_CP010443.1 Protein Homology CDS 3862828 3864327 . - 0 ID=cds3703;Parent=gene3800;Dbxref=Genbank:WP_000026117.1;Name=WP_000026117.1;gbkey=CDS;product=glycolate oxidase;protein_id=WP_000026117.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3864578 3865342 . + . ID=gene3801;Name=SH04_RS19055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19055;old_locus_tag=SH04_19065 NZ_CP010443.1 Protein Homology CDS 3864578 3865342 . + 0 ID=cds3704;Parent=gene3801;Dbxref=Genbank:WP_001297764.1;Name=WP_001297764.1;gbkey=CDS;product=glc operon transcriptional activator;protein_id=WP_001297764.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3865349 3866485 . - . ID=gene3802;Name=SH04_RS19060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19060;old_locus_tag=SH04_19070 NZ_CP010443.1 Protein Homology CDS 3865349 3866485 . - 0 ID=cds3705;Parent=gene3802;Dbxref=Genbank:WP_000626849.1;Name=WP_000626849.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_000626849.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 3866445 3867652 . + . ID=id203;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3866520 3867500 . + . ID=gene3803;Name=SH04_RS19065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19065;old_locus_tag=SH04_19075 NZ_CP010443.1 Protein Homology CDS 3866520 3867500 . + 0 ID=cds3706;Parent=gene3803;Dbxref=Genbank:WP_000019403.1;Name=WP_000019403.1;gbkey=CDS;product=transposase;protein_id=WP_000019403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3867647 3868714 . - . ID=gene3804;Name=SH04_RS19070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19070;old_locus_tag=SH04_19080 NZ_CP010443.1 Protein Homology CDS 3867647 3868714 . - 0 ID=cds3707;Parent=gene3804;Dbxref=Genbank:WP_000896895.1;Name=WP_000896895.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000896895.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3868760 3869518 . - . ID=gene3805;Name=SH04_RS19075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19075;old_locus_tag=SH04_19085 NZ_CP010443.1 Protein Homology CDS 3868760 3869518 . - 0 ID=cds3708;Parent=gene3805;Dbxref=Genbank:WP_000339531.1;Name=WP_000339531.1;gbkey=CDS;product=ATP-binding protein;protein_id=WP_000339531.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3869550 3870248 . - . ID=gene3806;Name=SH04_RS19080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19080;old_locus_tag=SH04_19090 NZ_CP010443.1 Protein Homology CDS 3869550 3870248 . - 0 ID=cds3709;Parent=gene3806;Dbxref=Genbank:WP_001325884.1;Name=WP_001325884.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001325884.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3870437 3871129 . + . ID=gene3807;Name=SH04_RS19085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19085;old_locus_tag=SH04_19095 NZ_CP010443.1 Protein Homology CDS 3870437 3871129 . + 0 ID=cds3710;Parent=gene3807;Dbxref=Genbank:WP_001190781.1;Name=WP_001190781.1;gbkey=CDS;product=ATP-binding protein;protein_id=WP_001190781.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3871178 3872677 . - . ID=gene3808;Name=SH04_RS19090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19090;old_locus_tag=SH04_19100 NZ_CP010443.1 Protein Homology CDS 3871178 3872677 . - 0 ID=cds3711;Parent=gene3808;Dbxref=Genbank:WP_000933250.1;Name=WP_000933250.1;Note=involved in the transport of inorganic phosphate;gbkey=CDS;product=low-affinity inorganic phosphate transporter 2;protein_id=WP_000933250.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3872969 3874828 . - . ID=gene3809;Name=SH04_RS19095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19095;old_locus_tag=SH04_19105 NZ_CP010443.1 Protein Homology CDS 3872969 3874828 . - 0 ID=cds3712;Parent=gene3809;Dbxref=Genbank:WP_001297309.1;Name=WP_001297309.1;Note=catalyzes the formation of glutathionylspermidine from glutathione and spermidine%3B also catalyzes the reverse reaction;gbkey=CDS;product=bifunctional glutathionylspermidine synthetase/amidase;protein_id=WP_001297309.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3875033 3875899 . + . ID=gene3810;Name=SH04_RS19100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19100;old_locus_tag=SH04_19110 NZ_CP010443.1 Protein Homology CDS 3875033 3875899 . + 0 ID=cds3713;Parent=gene3810;Dbxref=Genbank:WP_001295515.1;Name=WP_001295515.1;Note=YghU%3B B2989%3B one of eight putative glutathione transferase proteins from E. coli;gbkey=CDS;product=disulfide-bond oxidoreductase YghU;protein_id=WP_001295515.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3876022 3876270 . - . ID=gene3811;Name=SH04_RS19105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19105;old_locus_tag=SH04_19115 NZ_CP010443.1 Protein Homology CDS 3876022 3876270 . - 0 ID=cds3714;Parent=gene3811;Dbxref=Genbank:WP_000334896.1;Name=WP_000334896.1;gbkey=CDS;product=hydrogenase-2 operon protein HybG;protein_id=WP_000334896.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3876283 3876624 . - . ID=gene3812;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=SH04_RS19110;old_locus_tag=SH04_19120 NZ_CP010443.1 Protein Homology CDS 3876283 3876624 . - 0 ID=cds3715;Parent=gene3812;Dbxref=Genbank:WP_000544953.1;Name=WP_000544953.1;Note=plays a role in hydrogenase nickel cofactor insertion;gbkey=CDS;gene=hypA;product=hydrogenase nickel incorporation protein;protein_id=WP_000544953.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3876617 3877105 . - . ID=gene3813;Name=SH04_RS19115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19115;old_locus_tag=SH04_19125 NZ_CP010443.1 Protein Homology CDS 3876617 3877105 . - 0 ID=cds3716;Parent=gene3813;Dbxref=Genbank:WP_000134014.1;Name=WP_000134014.1;gbkey=CDS;product=hydrogenase-2 operon protein HybE;protein_id=WP_000134014.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3877098 3877592 . - . ID=gene3814;Name=hybD;gbkey=Gene;gene=hybD;gene_biotype=protein_coding;locus_tag=SH04_RS19120;old_locus_tag=SH04_19130 NZ_CP010443.1 Protein Homology CDS 3877098 3877592 . - 0 ID=cds3717;Parent=gene3814;Dbxref=Genbank:WP_001221939.1;Name=WP_001221939.1;Note=protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC);gbkey=CDS;gene=hybD;product=hydrogenase 2 maturation protease;protein_id=WP_001221939.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3877592 3879295 . - . ID=gene3815;Name=SH04_RS19125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19125;old_locus_tag=SH04_19135 NZ_CP010443.1 Protein Homology CDS 3877592 3879295 . - 0 ID=cds3718;Parent=gene3815;Dbxref=Genbank:WP_000083065.1;Name=WP_000083065.1;Note=involved in hydrogen uptake;gbkey=CDS;product=hydrogenase-2 large chain;protein_id=WP_000083065.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3879292 3880470 . - . ID=gene3816;Name=SH04_RS19130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19130;old_locus_tag=SH04_19140 NZ_CP010443.1 Protein Homology CDS 3879292 3880470 . - 0 ID=cds3719;Parent=gene3816;Dbxref=Genbank:WP_000017703.1;Name=WP_000017703.1;Note=HybB%3B cytochrome b subunit of the hydrogenase 2 enzyme%2C composed of HybA%2C B%2C C%2C and O subunits;gbkey=CDS;product=Ni/Fe-hydrogenase b-type cytochrome subunit;protein_id=WP_000017703.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3880460 3881446 . - . ID=gene3817;Name=SH04_RS19135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19135;old_locus_tag=SH04_19145 NZ_CP010443.1 Protein Homology CDS 3880460 3881446 . - 0 ID=cds3720;Parent=gene3817;Dbxref=Genbank:WP_001081870.1;Name=WP_001081870.1;Note=Fe-S ferrodoxin type component%3B participates in the periplasmic electron-transferring activity of hydrogenase 2;gbkey=CDS;product=hydrogenase-2 operon protein HybA;protein_id=WP_001081870.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3881449 3882567 . - . ID=gene3818;Name=SH04_RS19140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19140;old_locus_tag=SH04_19150 NZ_CP010443.1 Protein Homology CDS 3881449 3882567 . - 0 ID=cds3721;Parent=gene3818;Dbxref=Genbank:WP_000145410.1;Name=WP_000145410.1;Note=involved in hydrogen uptake;gbkey=CDS;product=hydrogenase-2 small chain;protein_id=WP_000145410.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3882574 3882759 . - . ID=gene3819;Name=SH04_RS19145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19145;old_locus_tag=SH04_19155 NZ_CP010443.1 Protein Homology CDS 3882574 3882759 . - 0 ID=cds3722;Parent=gene3819;Dbxref=Genbank:WP_001303662.1;Name=WP_001303662.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303662.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3882756 3883043 . - . ID=gene3820;Name=SH04_RS19150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19150;old_locus_tag=SH04_19160 NZ_CP010443.1 Protein Homology CDS 3882756 3883043 . - 0 ID=cds3723;Parent=gene3820;Dbxref=Genbank:WP_001059136.1;Name=WP_001059136.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001059136.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3883162 3884046 . - . ID=gene3821;Name=SH04_RS19155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS19155;pseudo=true NZ_CP010443.1 Protein Homology CDS 3883162 3884046 . - 0 ID=cds3724;Parent=gene3821;exception=annotated by transcript or proteomic data;gbkey=CDS;product=dienelactone hydrolase;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 3884203 3885243 . + . ID=gene3822;Name=SH04_RS19160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19160;old_locus_tag=SH04_19170 NZ_CP010443.1 Protein Homology CDS 3884203 3885243 . + 0 ID=cds3725;Parent=gene3822;Dbxref=Genbank:WP_000262172.1;Name=WP_000262172.1;gbkey=CDS;product=glyceraldehyde 3-phosphate reductase;protein_id=WP_000262172.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3885283 3885777 . - . ID=gene3823;Name=SH04_RS19165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19165;old_locus_tag=SH04_19175 NZ_CP010443.1 Protein Homology CDS 3885283 3885777 . - 0 ID=cds3726;Parent=gene3823;Dbxref=Genbank:WP_000439331.1;Name=WP_000439331.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000439331.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3885968 3886852 . + . ID=gene3824;Name=SH04_RS19170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19170;old_locus_tag=SH04_19180 NZ_CP010443.1 Protein Homology CDS 3885968 3886852 . + 0 ID=cds3727;Parent=gene3824;Dbxref=Genbank:WP_000018760.1;Name=WP_000018760.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000018760.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3887124 3887549 . - . ID=gene3825;Name=SH04_RS19175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19175;old_locus_tag=SH04_19185 NZ_CP010443.1 Protein Homology CDS 3887124 3887549 . - 0 ID=cds3728;Parent=gene3825;Dbxref=Genbank:WP_001240712.1;Name=WP_001240712.1;Note=membrane spanning protein in TonB-ExbB-ExbD complex%3B involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell;gbkey=CDS;product=biopolymer transporter ExbD;protein_id=WP_001240712.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3887556 3888290 . - . ID=gene3826;Name=SH04_RS19180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19180;old_locus_tag=SH04_19190 NZ_CP010443.1 Protein Homology CDS 3887556 3888290 . - 0 ID=cds3729;Parent=gene3826;Dbxref=Genbank:WP_000527844.1;Name=WP_000527844.1;Note=membrane spanning protein in TonB-ExbB-ExbD complex%3B involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell;gbkey=CDS;product=biopolymer transporter ExbB;protein_id=WP_000527844.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3888283 3888420 . - . ID=gene3827;Name=SH04_RS19185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19185;old_locus_tag=SH04_19195 NZ_CP010443.1 Protein Homology CDS 3888283 3888420 . - 0 ID=cds3730;Parent=gene3827;Dbxref=Genbank:WP_024167679.1;Name=WP_024167679.1;gbkey=CDS;product=membrane protein;protein_id=WP_024167679.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3888542 3889729 . + . ID=gene3828;Name=SH04_RS19190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19190;old_locus_tag=SH04_19200 NZ_CP010443.1 Protein Homology CDS 3888542 3889729 . + 0 ID=cds3731;Parent=gene3828;Dbxref=Genbank:WP_001301079.1;Name=WP_001301079.1;Note=catalyzes the formation of L-homocysteine from cystathionine;gbkey=CDS;product=cystathionine beta-lyase MetC;protein_id=WP_001301079.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3889869 3890528 . + . ID=gene3829;Name=SH04_RS19195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19195;old_locus_tag=SH04_19205 NZ_CP010443.1 Protein Homology CDS 3889869 3890528 . + 0 ID=cds3732;Parent=gene3829;Dbxref=Genbank:WP_000268419.1;Name=WP_000268419.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000268419.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3890568 3891467 . - . ID=gene3830;Name=SH04_RS19200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19200;old_locus_tag=SH04_19210 NZ_CP010443.1 Protein Homology CDS 3890568 3891467 . - 0 ID=cds3733;Parent=gene3830;Dbxref=Genbank:WP_001407451.1;Name=WP_001407451.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_001407451.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3891464 3891610 . - . ID=gene3831;Name=SH04_RS19205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19205;old_locus_tag=SH04_19215 NZ_CP010443.1 Protein Homology CDS 3891464 3891610 . - 0 ID=cds3734;Parent=gene3831;Dbxref=Genbank:WP_001298764.1;Name=WP_001298764.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001298764.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3891661 3892824 . + . ID=gene3832;Name=SH04_RS19210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19210;old_locus_tag=SH04_19220 NZ_CP010443.1 Protein Homology CDS 3891661 3892824 . + 0 ID=cds3735;Parent=gene3832;Dbxref=Genbank:WP_001058802.1;Name=WP_001058802.1;gbkey=CDS;product=alcohol dehydrogenase;protein_id=WP_001058802.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3892929 3893756 . + . ID=gene3833;Name=dkgA;gbkey=Gene;gene=dkgA;gene_biotype=protein_coding;locus_tag=SH04_RS19215;old_locus_tag=SH04_19225 NZ_CP010443.1 Protein Homology CDS 3892929 3893756 . + 0 ID=cds3736;Parent=gene3833;Dbxref=Genbank:WP_000013149.1;Name=WP_000013149.1;Note=methylglyoxal reductase/beta-keto ester reductase%3B catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid%3B also catalyzes the reduction of methylglyoxal%2C ethyl-2-methylacetoacetate and ethyl-acetoacetate;gbkey=CDS;gene=dkgA;product=2%2C5-diketo-D-gluconic acid reductase A;protein_id=WP_000013149.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3893956 3894882 . + . ID=gene3834;Name=SH04_RS19220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19220;old_locus_tag=SH04_19230 NZ_CP010443.1 Protein Homology CDS 3893956 3894882 . + 0 ID=cds3737;Parent=gene3834;Dbxref=Genbank:WP_000691619.1;Name=WP_000691619.1;gbkey=CDS;product=DUF3828 domain-containing protein;protein_id=WP_000691619.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3894933 3895190 . + . ID=gene3835;Name=SH04_RS19225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19225;old_locus_tag=SH04_19235 NZ_CP010443.1 Protein Homology CDS 3894933 3895190 . + 0 ID=cds3738;Parent=gene3835;Dbxref=Genbank:WP_000848528.1;Name=WP_000848528.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000848528.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3895233 3897452 . - . ID=gene3836;Name=SH04_RS19230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19230;old_locus_tag=SH04_19240 NZ_CP010443.1 Protein Homology CDS 3895233 3897452 . - 0 ID=cds3739;Parent=gene3836;Dbxref=Genbank:WP_000095187.1;Name=WP_000095187.1;gbkey=CDS;product=Radical SAM superfamily protein;protein_id=WP_000095187.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3897563 3898975 . - . ID=gene3837;Name=SH04_RS19235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19235;old_locus_tag=SH04_19245 NZ_CP010443.1 Protein Homology CDS 3897563 3898975 . - 0 ID=cds3740;Parent=gene3837;Dbxref=Genbank:WP_038432656.1;Name=WP_038432656.1;Note=septal ring component that protects the divisome from stress;gbkey=CDS;product=cell division protein FtsI;protein_id=WP_038432656.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3899050 3899787 . - . ID=gene3838;Name=SH04_RS19240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19240;old_locus_tag=SH04_19250 NZ_CP010443.1 Protein Homology CDS 3899050 3899787 . - 0 ID=cds3741;Parent=gene3838;Dbxref=Genbank:WP_000965722.1;Name=WP_000965722.1;Note=catalyzes the formation of 1%2C2-diacyl-sn-glycerol 3-phosphate from 1-acyl-sn-glycerol 3-phosphate using either acyl-CoA or acyl-ACP;gbkey=CDS;product=1-acyl-sn-glycerol-3-phosphate acyltransferase;protein_id=WP_000965722.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3900021 3902279 . - . ID=gene3839;Name=SH04_RS19245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19245;old_locus_tag=SH04_19255 NZ_CP010443.1 Protein Homology CDS 3900021 3902279 . - 0 ID=cds3742;Parent=gene3839;Dbxref=Genbank:WP_001281881.1;Name=WP_001281881.1;Note=decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling;gbkey=CDS;product=DNA topoisomerase 4 subunit A;protein_id=WP_001281881.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3902417 3904024 . - . ID=gene3840;Name=SH04_RS19250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19250;old_locus_tag=SH04_19260 NZ_CP010443.1 Protein Homology CDS 3902417 3904024 . - 0 ID=cds3743;Parent=gene3840;Dbxref=Genbank:WP_001295629.1;Name=WP_001295629.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_001295629.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3904157 3904552 . - . ID=gene3841;Name=SH04_RS19255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19255;old_locus_tag=SH04_19265 NZ_CP010443.1 Protein Homology CDS 3904157 3904552 . - 0 ID=cds3744;Parent=gene3841;Dbxref=Genbank:WP_000650107.1;Name=WP_000650107.1;gbkey=CDS;product=antitoxin;protein_id=WP_000650107.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3904554 3904850 . - . ID=gene3842;Name=SH04_RS19260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19260;old_locus_tag=SH04_19270 NZ_CP010443.1 Protein Homology CDS 3904554 3904850 . - 0 ID=cds3745;Parent=gene3842;Dbxref=Genbank:WP_000415584.1;Name=WP_000415584.1;gbkey=CDS;product=mRNA interferase MqsR;protein_id=WP_000415584.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3905055 3905537 . - . ID=gene3843;Name=SH04_RS19265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19265;old_locus_tag=SH04_19275 NZ_CP010443.1 Protein Homology CDS 3905055 3905537 . - 0 ID=cds3746;Parent=gene3843;Dbxref=Genbank:WP_000183505.1;Name=WP_000183505.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000183505.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3905590 3905982 . - . ID=gene3844;Name=SH04_RS19270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19270;old_locus_tag=SH04_19280 NZ_CP010443.1 Protein Homology CDS 3905590 3905982 . - 0 ID=cds3747;Parent=gene3844;Dbxref=Genbank:WP_000712658.1;Name=WP_000712658.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000712658.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3906134 3906793 . + . ID=gene3845;Name=SH04_RS19275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19275;old_locus_tag=SH04_19285 NZ_CP010443.1 Protein Homology CDS 3906134 3906793 . + 0 ID=cds3748;Parent=gene3845;Dbxref=Genbank:WP_001221495.1;Name=WP_001221495.1;Note=response regulator in two-component regulatory system with QseC%3B regulates FlhCD which is the master regulator for flagella and motility genes;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001221495.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3906790 3908139 . + . ID=gene3846;Name=SH04_RS19280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19280;old_locus_tag=SH04_19290 NZ_CP010443.1 Protein Homology CDS 3906790 3908139 . + 0 ID=cds3749;Parent=gene3846;Dbxref=Genbank:WP_000673402.1;Name=WP_000673402.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_000673402.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3908185 3908517 . - . ID=gene3847;Name=SH04_RS19285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19285;old_locus_tag=SH04_19295 NZ_CP010443.1 Protein Homology CDS 3908185 3908517 . - 0 ID=cds3750;Parent=gene3847;Dbxref=Genbank:WP_000917684.1;Name=WP_000917684.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000917684.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3908836 3909417 . + . ID=gene3848;Name=SH04_RS19290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19290;old_locus_tag=SH04_19300 NZ_CP010443.1 Protein Homology CDS 3908836 3909417 . + 0 ID=cds3751;Parent=gene3848;Dbxref=Genbank:WP_000065430.1;Name=WP_000065430.1;Note=involved in drug resistance;gbkey=CDS;product=modulator of drug activity B;protein_id=WP_000065430.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3909448 3909762 . + . ID=gene3849;Name=SH04_RS19295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19295;old_locus_tag=SH04_19305 NZ_CP010443.1 Protein Homology CDS 3909448 3909762 . + 0 ID=cds3752;Parent=gene3849;Dbxref=Genbank:WP_000958598.1;Name=WP_000958598.1;Note=catalyzes the oxidation of menadiol to menadione;gbkey=CDS;product=quinol monooxygenase YgiN;protein_id=WP_000958598.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3909810 3911702 . - . ID=gene3850;Name=SH04_RS19300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19300;old_locus_tag=SH04_19310 NZ_CP010443.1 Protein Homology CDS 3909810 3911702 . - 0 ID=cds3753;Parent=gene3850;Dbxref=Genbank:WP_000195296.1;Name=WP_000195296.1;Note=decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling;gbkey=CDS;product=DNA topoisomerase 4 subunit B;protein_id=WP_000195296.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3911731 3912312 . - . ID=gene3851;Name=SH04_RS19305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19305;old_locus_tag=SH04_19315 NZ_CP010443.1 Protein Homology CDS 3911731 3912312 . - 0 ID=cds3754;Parent=gene3851;Dbxref=Genbank:WP_000105733.1;Name=WP_000105733.1;Note=Displays esterase activity toward palmitoyl-CoA and pNP-butyrate;gbkey=CDS;product=esterase;protein_id=WP_000105733.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3912312 3913139 . - . ID=gene3852;Name=SH04_RS19310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19310;old_locus_tag=SH04_19320 NZ_CP010443.1 Protein Homology CDS 3912312 3913139 . - 0 ID=cds3755;Parent=gene3852;Dbxref=Genbank:WP_000444747.1;Name=WP_000444747.1;gbkey=CDS;product=3'%2C5'-cyclic adenosine monophosphate phosphodiesterase CpdA;protein_id=WP_000444747.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3913164 3913586 . - . ID=gene3853;Name=SH04_RS19315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19315;old_locus_tag=SH04_19325 NZ_CP010443.1 Protein Homology CDS 3913164 3913586 . - 0 ID=cds3756;Parent=gene3853;Dbxref=Genbank:WP_000833393.1;Name=WP_000833393.1;gbkey=CDS;product=dehydrogenase;protein_id=WP_000833393.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3913587 3914216 . - . ID=gene3854;Name=nudF;gbkey=Gene;gene=nudF;gene_biotype=protein_coding;locus_tag=SH04_RS19320;old_locus_tag=SH04_19330 NZ_CP010443.1 Protein Homology CDS 3913587 3914216 . - 0 ID=cds3757;Parent=gene3854;Dbxref=Genbank:WP_000917117.1;Name=WP_000917117.1;Note=ADP-sugar pyrophosphatase%3B catalyzes the formation of D-ribose 5-phosphate from ADP-ribose%3B can also act on ADP-mannose and ADP-glucose;gbkey=CDS;gene=nudF;product=ADP-ribose pyrophosphatase;protein_id=WP_000917117.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3914421 3915902 . + . ID=gene3855;Name=tolC;gbkey=Gene;gene=tolC;gene_biotype=protein_coding;locus_tag=SH04_RS19325;old_locus_tag=SH04_19335 NZ_CP010443.1 Protein Homology CDS 3914421 3915902 . + 0 ID=cds3758;Parent=gene3855;Dbxref=Genbank:WP_000735278.1;Name=WP_000735278.1;Note=trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules%3B functions with a number of efflux systems in the inner membrane to transport molecules out of the cell;gbkey=CDS;gene=tolC;product=outer membrane protein TolC;protein_id=WP_000735278.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3915902 3916162 . + . ID=gene3856;Name=SH04_RS19330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19330;old_locus_tag=SH04_19340 NZ_CP010443.1 Protein Homology CDS 3915902 3916162 . + 0 ID=cds3759;Parent=gene3856;Dbxref=Genbank:WP_001701108.1;Name=WP_001701108.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001701108.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3916050 3916721 . + . ID=gene3857;Name=SH04_RS19335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19335;old_locus_tag=SH04_19345 NZ_CP010443.1 Protein Homology CDS 3916050 3916721 . + 0 ID=cds3760;Parent=gene3857;Dbxref=Genbank:WP_000831543.1;Name=WP_000831543.1;gbkey=CDS;product=membrane protein;protein_id=WP_000831543.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3916727 3917887 . + . ID=gene3858;Name=SH04_RS19340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19340;old_locus_tag=SH04_19350 NZ_CP010443.1 Protein Homology CDS 3916727 3917887 . + 0 ID=cds3761;Parent=gene3858;Dbxref=Genbank:WP_000442860.1;Name=WP_000442860.1;gbkey=CDS;product=ATP-Grasp family ATPase;protein_id=WP_000442860.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3917925 3918713 . - . ID=gene3859;Name=SH04_RS19345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19345;old_locus_tag=SH04_19355 NZ_CP010443.1 Protein Homology CDS 3917925 3918713 . - 0 ID=cds3762;Parent=gene3859;Dbxref=Genbank:WP_001320780.1;Name=WP_001320780.1;Note=seems to be involved in biofilm formation%3B in asymptomatic bacteriuria E. coli strains 83972 and VR50%2C the ygiD gene is upregulated during biofilm formation in urine;gbkey=CDS;product=4%2C5- DOPA-extradiol-dioxygenase;protein_id=WP_001320780.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3918856 3919629 . + . ID=gene3860;Name=SH04_RS19350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19350;old_locus_tag=SH04_19360 NZ_CP010443.1 Protein Homology CDS 3918856 3919629 . + 0 ID=cds3763;Parent=gene3860;Dbxref=Genbank:WP_001295627.1;Name=WP_001295627.1;gbkey=CDS;product=zinc transporter ZupT;protein_id=WP_001295627.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3919687 3919857 . - . ID=gene3861;Name=SH04_RS19355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19355;old_locus_tag=SH04_19365 NZ_CP010443.1 Protein Homology CDS 3919687 3919857 . - 0 ID=cds3764;Parent=gene3861;Dbxref=Genbank:WP_000469266.1;Name=WP_000469266.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000469266.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3920119 3920772 . - . ID=gene3862;Name=ribB;gbkey=Gene;gene=ribB;gene_biotype=protein_coding;locus_tag=SH04_RS19360;old_locus_tag=SH04_19370 NZ_CP010443.1 Protein Homology CDS 3920119 3920772 . - 0 ID=cds3765;Parent=gene3862;Dbxref=Genbank:WP_001076997.1;Name=WP_001076997.1;Note=DHBP synthase%3B functions during riboflavin biosynthesis;gbkey=CDS;gene=ribB;product=3%2C4-dihydroxy-2-butanone 4-phosphate synthase;protein_id=WP_001076997.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3921146 3921436 . + . ID=gene3863;Name=SH04_RS19365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19365;old_locus_tag=SH04_19375 NZ_CP010443.1 Protein Homology CDS 3921146 3921436 . + 0 ID=cds3766;Parent=gene3863;Dbxref=Genbank:WP_001295626.1;Name=WP_001295626.1;gbkey=CDS;product=BMFP family fusogenic protein;protein_id=WP_001295626.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3921720 3922271 . + . ID=gene3864;Name=SH04_RS19370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19370;old_locus_tag=SH04_19380 NZ_CP010443.1 Protein Homology CDS 3921720 3922271 . + 0 ID=cds3767;Parent=gene3864;Dbxref=Genbank:WP_001272145.1;Name=WP_001272145.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_001272145.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 3922401 3923733 . + . ID=id204;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3922493 3922858 . + . ID=gene3865;Name=SH04_RS19375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19375;old_locus_tag=SH04_19385 NZ_CP010443.1 Protein Homology CDS 3922493 3922858 . + 0 ID=cds3768;Parent=gene3865;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3922816 3923721 . + . ID=gene3866;Name=SH04_RS19380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19380;old_locus_tag=SH04_19390 NZ_CP010443.1 Protein Homology CDS 3922816 3923721 . + 0 ID=cds3769;Parent=gene3866;Dbxref=Genbank:WP_000376502.1;Name=WP_000376502.1;gbkey=CDS;product=integrase;protein_id=WP_000376502.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3923706 3926171 . + . ID=gene3867;Name=SH04_RS19385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19385;old_locus_tag=SH04_19395 NZ_CP010443.1 Protein Homology CDS 3923706 3926171 . + 0 ID=cds3770;Parent=gene3867;Dbxref=Genbank:WP_000016375.1;Name=WP_000016375.1;gbkey=CDS;product=fimbrial outer membrane usher protein StdB;protein_id=WP_000016375.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3926187 3926936 . + . ID=gene3868;Name=SH04_RS19390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19390;old_locus_tag=SH04_19400 NZ_CP010443.1 Protein Homology CDS 3926187 3926936 . + 0 ID=cds3771;Parent=gene3868;Dbxref=Genbank:WP_001269824.1;Name=WP_001269824.1;gbkey=CDS;product=periplasmic pilin chaperone;protein_id=WP_001269824.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3926938 3928002 . + . ID=gene3869;Name=SH04_RS19395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19395;old_locus_tag=SH04_19405 NZ_CP010443.1 Protein Homology CDS 3926938 3928002 . + 0 ID=cds3772;Parent=gene3869;Dbxref=Genbank:WP_001269802.1;Name=WP_001269802.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_001269802.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3928045 3928245 . - . ID=gene3870;Name=SH04_RS19400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19400;old_locus_tag=SH04_19410 NZ_CP010443.1 Protein Homology CDS 3928045 3928245 . - 0 ID=cds3773;Parent=gene3870;Dbxref=Genbank:WP_000350095.1;Name=WP_000350095.1;Note=Involved in glycogen synthesis. May be involved in glycogen priming;gbkey=CDS;product=glycogen synthase;protein_id=WP_000350095.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3928514 3929143 . + . ID=gene3871;Name=SH04_RS19405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19405;old_locus_tag=SH04_19415 NZ_CP010443.1 Protein Homology CDS 3928514 3929143 . + 0 ID=cds3774;Parent=gene3871;Dbxref=Genbank:WP_000599926.1;Name=WP_000599926.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000599926.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3929170 3930831 . + . ID=gene3872;Name=SH04_RS19410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19410;old_locus_tag=SH04_19420 NZ_CP010443.1 Protein Homology CDS 3929170 3930831 . + 0 ID=cds3775;Parent=gene3872;Dbxref=Genbank:WP_001311137.1;Name=WP_001311137.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001311137.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3930932 3931184 . + . ID=gene3873;Name=SH04_RS19415;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS19415;pseudo=true NZ_CP010443.1 Protein Homology CDS 3930932 3931184 . + 0 ID=cds3776;Parent=gene3873;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 3931168 3931559 . + . ID=gene3874;Name=SH04_RS19420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS19420;pseudo=true NZ_CP010443.1 Protein Homology CDS 3931168 3931559 . + 0 ID=cds3777;Parent=gene3874;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:3931434..3931436%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 3931626 3933059 . - . ID=gene3875;Name=SH04_RS19425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19425;old_locus_tag=SH04_19435 NZ_CP010443.1 Protein Homology CDS 3931626 3933059 . - 0 ID=cds3778;Parent=gene3875;Dbxref=Genbank:WP_000869178.1;Name=WP_000869178.1;Note=catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D%2CD-heptose-1%2C7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D%2CD-heptose;gbkey=CDS;product=bifunctional protein HldE;protein_id=WP_000869178.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3933107 3935947 . - . ID=gene3876;Name=SH04_RS19430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19430;old_locus_tag=SH04_19440 NZ_CP010443.1 Protein Homology CDS 3933107 3935947 . - 0 ID=cds3779;Parent=gene3876;Dbxref=Genbank:WP_001301081.1;Name=WP_001301081.1;Note=catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase%3B also catalyzes the reverse reaction - deadenylation%3B adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme;gbkey=CDS;product=glutamate--ammonia-ligase adenylyltransferase;protein_id=WP_001301081.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3935970 3937271 . - . ID=gene3877;Name=SH04_RS19435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19435;old_locus_tag=SH04_19445 NZ_CP010443.1 Protein Homology CDS 3935970 3937271 . - 0 ID=cds3780;Parent=gene3877;Dbxref=Genbank:WP_000046281.1;Name=WP_000046281.1;gbkey=CDS;product=inorganic triphosphatase;protein_id=WP_000046281.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3937288 3937473 . - . ID=gene3878;Name=SH04_RS19440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19440;old_locus_tag=SH04_19450 NZ_CP010443.1 Protein Homology CDS 3937288 3937473 . - 0 ID=cds3781;Parent=gene3878;Dbxref=Genbank:WP_001298386.1;Name=WP_001298386.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001298386.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3937513 3938133 . + . ID=gene3879;Name=SH04_RS19445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19445;old_locus_tag=SH04_19455 NZ_CP010443.1 Protein Homology CDS 3937513 3938133 . + 0 ID=cds3782;Parent=gene3879;Dbxref=Genbank:WP_001125331.1;Name=WP_001125331.1;gbkey=CDS;product=signal transduction protein;protein_id=WP_001125331.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3938197 3939435 . + . ID=gene3880;Name=SH04_RS19450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19450;old_locus_tag=SH04_19460 NZ_CP010443.1 Protein Homology CDS 3938197 3939435 . + 0 ID=cds3783;Parent=gene3880;Dbxref=Genbank:WP_000708487.1;Name=WP_000708487.1;gbkey=CDS;product=multifunctional CCA protein;protein_id=WP_000708487.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3939616 3940437 . - . ID=gene3881;Name=SH04_RS19455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19455;old_locus_tag=SH04_19465 NZ_CP010443.1 Protein Homology CDS 3939616 3940437 . - 0 ID=cds3784;Parent=gene3881;Dbxref=Genbank:WP_001281927.1;Name=WP_001281927.1;Note=BacA%3B phosphatase activity in Escherichia coli not kinase%3B involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell;gbkey=CDS;product=undecaprenyl-diphosphatase;protein_id=WP_001281927.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3940527 3940895 . - . ID=gene3882;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;locus_tag=SH04_RS19460;old_locus_tag=SH04_19470 NZ_CP010443.1 Protein Homology CDS 3940527 3940895 . - 0 ID=cds3785;Parent=gene3882;Dbxref=Genbank:WP_001295541.1;Name=WP_001295541.1;Note=catalyzes the conversion of 7%2C8-dihydroneopterin to 6-hydroxymethyl-7%2C8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin;gbkey=CDS;gene=folB;product=dihydroneopterin aldolase;protein_id=WP_001295541.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3941000 3941617 . + . ID=gene3883;Name=SH04_RS19465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19465;old_locus_tag=SH04_19475 NZ_CP010443.1 Protein Homology CDS 3941000 3941617 . + 0 ID=cds3786;Parent=gene3883;Dbxref=Genbank:WP_001272796.1;Name=WP_001272796.1;Note=involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis%3B functions with PlsX;gbkey=CDS;product=glycerol-3-phosphate acyltransferase;protein_id=WP_001272796.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3941630 3942562 . - . ID=gene3884;Name=SH04_RS19470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19470;old_locus_tag=SH04_19480 NZ_CP010443.1 Protein Homology CDS 3941630 3942562 . - 0 ID=cds3787;Parent=gene3884;Dbxref=Genbank:WP_000935206.1;Name=WP_000935206.1;gbkey=CDS;product=transcriptional activator TtdR;protein_id=WP_000935206.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3942772 3943680 . + . ID=gene3885;Name=SH04_RS19475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19475;old_locus_tag=SH04_19485 NZ_CP010443.1 Protein Homology CDS 3942772 3943680 . + 0 ID=cds3788;Parent=gene3885;Dbxref=Genbank:WP_001380071.1;Name=WP_001380071.1;Note=Involved in the tartrate degradation pathway;gbkey=CDS;product=tartrate dehydratase subunit alpha;protein_id=WP_001380071.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3943677 3944281 . + . ID=gene3886;Name=SH04_RS19480;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS19480;pseudo=true NZ_CP010443.1 Protein Homology CDS 3943677 3944281 . + 0 ID=cds3789;Parent=gene3886;Note=Involved in the tartrate degradation pathway;exception=annotated by transcript or proteomic data;gbkey=CDS;product=tartrate dehydratase subunit beta;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 3944329 3945792 . + . ID=gene3887;Name=SH04_RS19485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19485;old_locus_tag=SH04_19495 NZ_CP010443.1 Protein Homology CDS 3944329 3945792 . + 0 ID=cds3790;Parent=gene3887;Dbxref=Genbank:WP_000804973.1;Name=WP_000804973.1;Note=involved in the transport of citrate into the cell along with the export of succinate out of the cell;gbkey=CDS;product=L-tartrate/succinate antiporter;protein_id=WP_000804973.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3945835 3946848 . - . ID=gene3888;Name=SH04_RS19490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19490;old_locus_tag=SH04_19500 NZ_CP010443.1 Protein Homology CDS 3945835 3946848 . - 0 ID=cds3791;Parent=gene3888;Dbxref=Genbank:WP_001264352.1;Name=WP_001264352.1;Note=universal genome maintenance protein%3B Kae1/Qri7/OSGEP/YgjD family protein%3B in Archaea%2C some Kae1 are found as fusion proteins similar to two distinct proteins in yeast that are involved in the KEOPS complex%3B kinase associated endopeptidase 1 (Kae1) and a serine/threonine protein kinase (Bud32)%3B in Pyrococcus Kae1 has atypical AP endonuclease activity and inhibits the kinase activity of Bud32%3B the protein is essential in Escherichia coli and Bacillus subtilis;gbkey=CDS;product=tRNA N6-adenosine threonylcarbamoyltransferase;protein_id=WP_001264352.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3947086 3947301 . + . ID=gene3889;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=SH04_RS19495;old_locus_tag=SH04_19505 NZ_CP010443.1 Protein Homology CDS 3947086 3947301 . + 0 ID=cds3792;Parent=gene3889;Dbxref=Genbank:WP_001144069.1;Name=WP_001144069.1;Note=a small basic protein that is one of the last in the subunit assembly%3B omission does not prevent assembly but the subunit is inactive%3B binds central domain of 16S rRNA;gbkey=CDS;gene=rpsU;product=30S ribosomal protein S21;protein_id=WP_001144069.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3947412 3949157 . + . ID=gene3890;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;locus_tag=SH04_RS19500;old_locus_tag=SH04_19510 NZ_CP010443.1 Protein Homology CDS 3947412 3949157 . + 0 ID=cds3793;Parent=gene3890;Dbxref=Genbank:WP_000918827.1;Name=WP_000918827.1;Note=synthesizes RNA primers at the replication forks;gbkey=CDS;gene=dnaG;product=DNA primase;protein_id=WP_000918827.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3949352 3951193 . + . ID=gene3891;Name=SH04_RS19505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19505;old_locus_tag=SH04_19515 NZ_CP010443.1 Protein Homology CDS 3949352 3951193 . + 0 ID=cds3794;Parent=gene3891;Dbxref=Genbank:WP_000437376.1;Name=WP_000437376.1;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this is the primary sigma factor of bacteria;gbkey=CDS;product=RNA polymerase sigma factor RpoD;protein_id=WP_000437376.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3951272 3951778 . - . ID=gene3892;Name=SH04_RS19510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19510;old_locus_tag=SH04_19520 NZ_CP010443.1 Protein Homology CDS 3951272 3951778 . - 0 ID=cds3795;Parent=gene3892;Dbxref=Genbank:WP_000228937.1;Name=WP_000228937.1;gbkey=CDS;product=G/U mismatch DNA glycosylase;protein_id=WP_000228937.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3951903 3951978 . + . ID=gene3893;Name=SH04_RS19515;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS19515;old_locus_tag=SH04_19525 NZ_CP010443.1 tRNAscan-SE tRNA 3951903 3951978 . + . ID=rna97;Parent=gene3893;anticodon=(pos:3951936..3951938);gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 tRNAscan-SE exon 3951903 3951978 . + . ID=id205;Parent=rna97;anticodon=(pos:3951936..3951938);gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 RefSeq gene 3952032 3952796 . - . ID=gene3894;Name=SH04_RS19520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19520;old_locus_tag=SH04_19530 NZ_CP010443.1 Protein Homology CDS 3952032 3952796 . - 0 ID=cds3796;Parent=gene3894;Dbxref=Genbank:WP_001066494.1;Name=WP_001066494.1;gbkey=CDS;product=NADPH-dependent ferric-chelate reductase;protein_id=WP_001066494.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3953084 3953707 . + . ID=gene3895;Name=SH04_RS19525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19525;old_locus_tag=SH04_19535 NZ_CP010443.1 Protein Homology CDS 3953084 3953707 . + 0 ID=cds3797;Parent=gene3895;Dbxref=Genbank:WP_000018003.1;Name=WP_000018003.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000018003.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3953861 3955381 . - . ID=gene3896;Name=SH04_RS19530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19530;old_locus_tag=SH04_19540 NZ_CP010443.1 Protein Homology CDS 3953861 3955381 . - 0 ID=cds3798;Parent=gene3896;Dbxref=Genbank:WP_000094721.1;Name=WP_000094721.1;gbkey=CDS;product=aerotaxis receptor;protein_id=WP_000094721.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3955799 3957178 . + . ID=gene3897;Name=SH04_RS19535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19535;old_locus_tag=SH04_19545 NZ_CP010443.1 Protein Homology CDS 3955799 3957178 . + 0 ID=cds3799;Parent=gene3897;Dbxref=Genbank:WP_001301395.1;Name=WP_001301395.1;Note=catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate;gbkey=CDS;product=putrescine aminotransferase;protein_id=WP_001301395.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3957220 3957552 . - . ID=gene3898;Name=SH04_RS19540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19540;old_locus_tag=SH04_19550 NZ_CP010443.1 Protein Homology CDS 3957220 3957552 . - 0 ID=cds3800;Parent=gene3898;Dbxref=Genbank:WP_000450594.1;Name=WP_000450594.1;gbkey=CDS;product=tRNA-binding protein;protein_id=WP_000450594.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3957771 3958754 . + . ID=gene3899;Name=SH04_RS19545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19545;old_locus_tag=SH04_19555 NZ_CP010443.1 Protein Homology CDS 3957771 3958754 . + 0 ID=cds3801;Parent=gene3899;Dbxref=Genbank:WP_000212475.1;Name=WP_000212475.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000212475.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3958938 3962030 . + . ID=gene3900;Name=ebgA;gbkey=Gene;gene=ebgA;gene_biotype=protein_coding;locus_tag=SH04_RS19550;old_locus_tag=SH04_19560 NZ_CP010443.1 Protein Homology CDS 3958938 3962030 . + 0 ID=cds3802;Parent=gene3900;Dbxref=Genbank:WP_001082856.1;Name=WP_001082856.1;Note=in Escherichia coli this is the second beta-galactosidase system;gbkey=CDS;gene=ebgA;product=evolved beta-galactosidase subunit alpha;protein_id=WP_001082856.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3962027 3962476 . + . ID=gene3901;Name=ebgC;gbkey=Gene;gene=ebgC;gene_biotype=protein_coding;locus_tag=SH04_RS19555;old_locus_tag=SH04_19565 NZ_CP010443.1 Protein Homology CDS 3962027 3962476 . + 0 ID=cds3803;Parent=gene3901;Dbxref=Genbank:WP_001219954.1;Name=WP_001219954.1;Note=in Escherichia coli this is the second beta-galactosidase system;gbkey=CDS;gene=ebgC;product=evolved beta-galactosidase subunit beta;protein_id=WP_001219954.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3962539 3963972 . + . ID=gene3902;Name=SH04_RS19560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19560;old_locus_tag=SH04_19570 NZ_CP010443.1 Protein Homology CDS 3962539 3963972 . + 0 ID=cds3804;Parent=gene3902;Dbxref=Genbank:WP_001285432.1;Name=WP_001285432.1;gbkey=CDS;product=inner membrane transporter YgjI;protein_id=WP_001285432.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3964106 3965176 . + . ID=gene3903;Name=SH04_RS19565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19565;old_locus_tag=SH04_19575 NZ_CP010443.1 Protein Homology CDS 3964106 3965176 . + 0 ID=cds3805;Parent=gene3903;Dbxref=Genbank:WP_000767652.1;Name=WP_000767652.1;gbkey=CDS;product=periplasmic protein;protein_id=WP_000767652.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3965193 3967544 . + . ID=gene3904;Name=SH04_RS19570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19570;old_locus_tag=SH04_19580 NZ_CP010443.1 Protein Homology CDS 3965193 3967544 . + 0 ID=cds3806;Parent=gene3904;Dbxref=Genbank:WP_000695487.1;Name=WP_000695487.1;gbkey=CDS;product=glucosidase YgjK;protein_id=WP_000695487.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3967970 3969988 . + . ID=gene3905;Name=SH04_RS19575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19575;old_locus_tag=SH04_19585 NZ_CP010443.1 Protein Homology CDS 3967970 3969988 . + 0 ID=cds3807;Parent=gene3905;Dbxref=Genbank:WP_000121433.1;Name=WP_000121433.1;gbkey=CDS;product=2%2C4-dienoyl-CoA reductase [NADPH];protein_id=WP_000121433.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3970033 3970449 . - . ID=gene3906;Name=SH04_RS19580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19580;old_locus_tag=SH04_19590 NZ_CP010443.1 Protein Homology CDS 3970033 3970449 . - 0 ID=cds3808;Parent=gene3906;Dbxref=Genbank:WP_000560266.1;Name=WP_000560266.1;gbkey=CDS;product=antitoxin HigA;protein_id=WP_000560266.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3970446 3970760 . - . ID=gene3907;Name=SH04_RS19585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19585;old_locus_tag=SH04_19595 NZ_CP010443.1 Protein Homology CDS 3970446 3970760 . - 0 ID=cds3809;Parent=gene3907;Dbxref=Genbank:WP_000550189.1;Name=WP_000550189.1;gbkey=CDS;product=mRNA interferase HigB;protein_id=WP_000550189.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3970702 3970941 . - . ID=gene3908;Name=SH04_RS19590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19590;old_locus_tag=SH04_19600 NZ_CP010443.1 Protein Homology CDS 3970702 3970941 . - 0 ID=cds3810;Parent=gene3908;Dbxref=Genbank:WP_001326617.1;Name=WP_001326617.1;gbkey=CDS;product=toxin RelE;protein_id=WP_001326617.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3971044 3972180 . - . ID=gene3909;Name=SH04_RS19595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19595;old_locus_tag=SH04_19605 NZ_CP010443.1 Protein Homology CDS 3971044 3972180 . - 0 ID=cds3811;Parent=gene3909;Dbxref=Genbank:WP_000018695.1;Name=WP_000018695.1;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase G;protein_id=WP_000018695.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3972265 3972768 . + . ID=gene3910;Name=SH04_RS19600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19600;old_locus_tag=SH04_19610 NZ_CP010443.1 Protein Homology CDS 3972265 3972768 . + 0 ID=cds3812;Parent=gene3910;Dbxref=Genbank:WP_001333820.1;Name=WP_001333820.1;gbkey=CDS;product=metal dependent hydrolase;protein_id=WP_001333820.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3972845 3973537 . + . ID=gene3911;Name=SH04_RS19605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19605;old_locus_tag=SH04_19615 NZ_CP010443.1 Protein Homology CDS 3972845 3973537 . + 0 ID=cds3813;Parent=gene3911;Dbxref=Genbank:WP_000942548.1;Name=WP_000942548.1;gbkey=CDS;product=DUF218 domain-containing protein;protein_id=WP_000942548.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3973616 3974602 . + . ID=gene3912;Name=SH04_RS19610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19610;old_locus_tag=SH04_19620 NZ_CP010443.1 Protein Homology CDS 3973616 3974602 . + 0 ID=cds3814;Parent=gene3912;Dbxref=Genbank:WP_000617698.1;Name=WP_000617698.1;gbkey=CDS;product=NAD(P)-dependent dehydrogenase;protein_id=WP_000617698.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3974885 3975850 . + . ID=gene3913;Name=SH04_RS19615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19615;old_locus_tag=SH04_19625 NZ_CP010443.1 Protein Homology CDS 3974885 3975850 . + 0 ID=cds3815;Parent=gene3913;Dbxref=Genbank:WP_001098806.1;Name=WP_001098806.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001098806.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3976249 3977493 . + . ID=gene3914;Name=SH04_RS19620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19620;old_locus_tag=SH04_19630 NZ_CP010443.1 Protein Homology CDS 3976249 3977493 . + 0 ID=cds3816;Parent=gene3914;Dbxref=Genbank:WP_000211655.1;Name=WP_000211655.1;Note=involved in the import of serine and threonine coupled with the import of sodium;gbkey=CDS;product=serine/threonine transporter SstT;protein_id=WP_000211655.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3977498 3978049 . - . ID=gene3915;Name=SH04_RS19625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19625;old_locus_tag=SH04_19635 NZ_CP010443.1 Protein Homology CDS 3977498 3978049 . - 0 ID=cds3817;Parent=gene3915;Dbxref=Genbank:WP_000128135.1;Name=WP_000128135.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000128135.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3978132 3979619 . - . ID=gene3916;Name=SH04_RS19630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19630;old_locus_tag=SH04_19640 NZ_CP010443.1 Protein Homology CDS 3978132 3979619 . - 0 ID=cds3818;Parent=gene3916;Dbxref=Genbank:WP_001199390.1;Name=WP_001199390.1;gbkey=CDS;product=altronate dehydratase;protein_id=WP_001199390.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3979634 3981046 . - . ID=gene3917;Name=SH04_RS19635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19635;old_locus_tag=SH04_19645 NZ_CP010443.1 Protein Homology CDS 3979634 3981046 . - 0 ID=cds3819;Parent=gene3917;Dbxref=Genbank:WP_000187442.1;Name=WP_000187442.1;Note=catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate%3B functions in glucuronic and galacturonic metabolism;gbkey=CDS;product=uronate isomerase;protein_id=WP_000187442.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3981529 3982827 . + . ID=gene3918;Name=SH04_RS19640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19640;old_locus_tag=SH04_19650 NZ_CP010443.1 Protein Homology CDS 3981529 3982827 . + 0 ID=cds3820;Parent=gene3918;Dbxref=Genbank:WP_001226465.1;Name=WP_001226465.1;Note=involved in the transport of aldohexuronates;gbkey=CDS;product=hexuronate transporter;protein_id=WP_001226465.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3982957 3983733 . + . ID=gene3919;Name=SH04_RS19645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19645;old_locus_tag=SH04_19655 NZ_CP010443.1 Protein Homology CDS 3982957 3983733 . + 0 ID=cds3821;Parent=gene3919;Dbxref=Genbank:WP_000406488.1;Name=WP_000406488.1;Note=regulates the expression of uxuBA;gbkey=CDS;product=exu regulon transcriptional regulator;protein_id=WP_000406488.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3984078 3984740 . + . ID=gene3920;Name=SH04_RS19650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19650;old_locus_tag=SH04_19660 NZ_CP010443.1 Protein Homology CDS 3984078 3984740 . + 0 ID=cds3822;Parent=gene3920;Dbxref=Genbank:WP_000422149.1;Name=WP_000422149.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000422149.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3984744 3985127 . + . ID=gene3921;Name=SH04_RS19655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19655;old_locus_tag=SH04_19665 NZ_CP010443.1 Protein Homology CDS 3984744 3985127 . + 0 ID=cds3823;Parent=gene3921;Dbxref=Genbank:WP_001166760.1;Name=WP_001166760.1;gbkey=CDS;product=modulator protein MzrA;protein_id=WP_001166760.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3985274 3985642 . + . ID=gene3922;Name=SH04_RS19660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19660;old_locus_tag=SH04_19670 NZ_CP010443.1 Protein Homology CDS 3985274 3985642 . + 0 ID=cds3824;Parent=gene3922;Dbxref=Genbank:WP_001295543.1;Name=WP_001295543.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295543.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3985680 3985985 . + . ID=gene3923;Name=SH04_RS19665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19665;old_locus_tag=SH04_19675 NZ_CP010443.1 Protein Homology CDS 3985680 3985985 . + 0 ID=cds3825;Parent=gene3923;Dbxref=Genbank:WP_000031415.1;Name=WP_000031415.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000031415.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3985988 3986392 . + . ID=gene3924;Name=SH04_RS19670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19670;old_locus_tag=SH04_19680 NZ_CP010443.1 Protein Homology CDS 3985988 3986392 . + 0 ID=cds3826;Parent=gene3924;Dbxref=Genbank:WP_000785722.1;Name=WP_000785722.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000785722.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3986382 3986681 . + . ID=gene3925;Name=SH04_RS19675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19675;old_locus_tag=SH04_19685 NZ_CP010443.1 Protein Homology CDS 3986382 3986681 . + 0 ID=cds3827;Parent=gene3925;Dbxref=Genbank:WP_000096091.1;Name=WP_000096091.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000096091.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3986867 3987259 . + . ID=gene3926;Name=SH04_RS19680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19680;old_locus_tag=SH04_19690 NZ_CP010443.1 Protein Homology CDS 3986867 3987259 . + 0 ID=cds3828;Parent=gene3926;Dbxref=Genbank:WP_000732240.1;Name=WP_000732240.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000732240.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3987329 3988315 . + . ID=gene3927;Name=SH04_RS19685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19685;old_locus_tag=SH04_19695 NZ_CP010443.1 Protein Homology CDS 3987329 3988315 . + 0 ID=cds3829;Parent=gene3927;Dbxref=Genbank:WP_000531213.1;Name=WP_000531213.1;gbkey=CDS;product=glutathionyl-hydroquinone reductase YqjG;protein_id=WP_000531213.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3988609 3988974 . + . ID=gene3928;Name=SH04_RS19690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19690;old_locus_tag=SH04_19700 NZ_CP010443.1 Protein Homology CDS 3988609 3988974 . + 0 ID=cds3830;Parent=gene3928;Dbxref=Genbank:WP_000384145.1;Name=WP_000384145.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000384145.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3989216 3989572 . + . ID=gene3929;Name=SH04_RS19695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19695;old_locus_tag=SH04_19705 NZ_CP010443.1 Protein Homology CDS 3989216 3989572 . + 0 ID=cds3831;Parent=gene3929;Dbxref=Genbank:WP_001198807.1;Name=WP_001198807.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001198807.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3989623 3990519 . - . ID=gene3930;Name=SH04_RS19700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19700;old_locus_tag=SH04_19710 NZ_CP010443.1 Protein Homology CDS 3989623 3990519 . - 0 ID=cds3832;Parent=gene3930;Dbxref=Genbank:WP_001041009.1;Name=WP_001041009.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_001041009.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3990624 3991325 . + . ID=gene3931;Name=SH04_RS19705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19705;old_locus_tag=SH04_19715 NZ_CP010443.1 Protein Homology CDS 3990624 3991325 . + 0 ID=cds3833;Parent=gene3931;Dbxref=Genbank:WP_000633576.1;Name=WP_000633576.1;gbkey=CDS;product=pirin-like protein YhaK;protein_id=WP_000633576.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3991345 3991512 . + . ID=gene3932;Name=SH04_RS19710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19710;old_locus_tag=SH04_19720 NZ_CP010443.1 Protein Homology CDS 3991345 3991512 . + 0 ID=cds3834;Parent=gene3932;Dbxref=Genbank:WP_000987175.1;Name=WP_000987175.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000987175.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3991646 3992956 . - . ID=gene3933;Name=SH04_RS19715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19715;old_locus_tag=SH04_19725 NZ_CP010443.1 Protein Homology CDS 3991646 3992956 . - 0 ID=cds3835;Parent=gene3933;Dbxref=Genbank:WP_000460499.1;Name=WP_000460499.1;gbkey=CDS;product=L-serine dehydratase alpha chain;protein_id=WP_000460499.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3992984 3994315 . - . ID=gene3934;Name=SH04_RS19720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19720;old_locus_tag=SH04_19730 NZ_CP010443.1 Protein Homology CDS 3992984 3994315 . - 0 ID=cds3836;Parent=gene3934;Dbxref=Genbank:WP_000401598.1;Name=WP_000401598.1;gbkey=CDS;product=transporter;protein_id=WP_000401598.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3994590 3995954 . - . ID=gene3935;Name=SH04_RS19725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19725;old_locus_tag=SH04_19735 NZ_CP010443.1 Protein Homology CDS 3994590 3995954 . - 0 ID=cds3837;Parent=gene3935;Dbxref=Genbank:WP_000622126.1;Name=WP_000622126.1;Note=catalyzes the formation of pyruvate from serine;gbkey=CDS;product=L-serine dehydratase TdcG;protein_id=WP_000622126.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3996026 3996415 . - . ID=gene3936;Name=SH04_RS19730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19730;old_locus_tag=SH04_19740 NZ_CP010443.1 Protein Homology CDS 3996026 3996415 . - 0 ID=cds3838;Parent=gene3936;Dbxref=Genbank:WP_000719990.1;Name=WP_000719990.1;Note=has endoribonuclease activity on mRNA;gbkey=CDS;product=reactive intermediate/imine deaminase;protein_id=WP_000719990.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3996429 3998723 . - . ID=gene3937;Name=SH04_RS19735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19735;old_locus_tag=SH04_19745 NZ_CP010443.1 Protein Homology CDS 3996429 3998723 . - 0 ID=cds3839;Parent=gene3937;Dbxref=Genbank:WP_000861734.1;Name=WP_000861734.1;Note=formate acetyltransferase%3B catalyzes the formation of formate and acetyl-CoA from pyruvate;gbkey=CDS;product=PFL-like enzyme TdcE;protein_id=WP_000861734.1;transl_table=11 NZ_CP010443.1 RefSeq gene 3998757 3998951 . - . ID=gene3938;Name=SH04_RS22875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22875;old_locus_tag=SH04_19750 NZ_CP010443.1 Protein Homology CDS 3998757 3998951 . - 0 ID=cds3840;Parent=gene3938;Dbxref=Genbank:WP_038432660.1;Name=WP_038432660.1;gbkey=CDS;product=propionate kinase;protein_id=WP_038432660.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 3999156 4000360 . + . ID=id206;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 3999305 4000285 . - . ID=gene3939;Name=SH04_RS19745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19745;old_locus_tag=SH04_19755 NZ_CP010443.1 Protein Homology CDS 3999305 4000285 . - 0 ID=cds3841;Parent=gene3939;Dbxref=Genbank:WP_000019403.1;Name=WP_000019403.1;gbkey=CDS;product=transposase;protein_id=WP_000019403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4000352 4001164 . - . ID=gene3940;Name=SH04_RS19750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS19750;partial=true;pseudo=true;start_range=.,4000352 NZ_CP010443.1 Protein Homology CDS 4000352 4001164 . - 0 ID=cds3842;Parent=gene3940;Note=catalyzes the formation of propanoyl phosphate from propanoate and ATP%3B TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=propionate kinase;pseudo=true;start_range=.,4000352;transl_table=11 NZ_CP010443.1 RefSeq gene 4001190 4002521 . - . ID=gene3941;Name=SH04_RS19755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19755;old_locus_tag=SH04_19765 NZ_CP010443.1 Protein Homology CDS 4001190 4002521 . - 0 ID=cds3843;Parent=gene3941;Dbxref=Genbank:WP_000107723.1;Name=WP_000107723.1;gbkey=CDS;product=threonine/serine transporter TdcC;protein_id=WP_000107723.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4002543 4003532 . - . ID=gene3942;Name=SH04_RS19760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19760;old_locus_tag=SH04_19770 NZ_CP010443.1 Protein Homology CDS 4002543 4003532 . - 0 ID=cds3844;Parent=gene3942;Dbxref=Genbank:WP_000548347.1;Name=WP_000548347.1;Note=catalyzes the formation of 2-oxobutanoate from L-threonine%3B catabolic;gbkey=CDS;product=L-threonine dehydratase catabolic TdcB;protein_id=WP_000548347.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4003631 4004569 . - . ID=gene3943;Name=SH04_RS19765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19765;old_locus_tag=SH04_19775 NZ_CP010443.1 Protein Homology CDS 4003631 4004569 . - 0 ID=cds3845;Parent=gene3943;Dbxref=Genbank:WP_000104211.1;Name=WP_000104211.1;Note=regulates the tdcABCDEFG operon which is involved in amino acid degradation;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000104211.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4004758 4005102 . + . ID=gene3944;Name=SH04_RS19770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19770;old_locus_tag=SH04_19780 NZ_CP010443.1 Protein Homology CDS 4004758 4005102 . + 0 ID=cds3846;Parent=gene3944;Dbxref=Genbank:WP_000145840.1;Name=WP_000145840.1;Note=participates in controlling the expression of several structural genes for the enzyme threonine dehydratase%3B TdcR activates the tdcABCDEFG operon;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000145840.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4005358 4005897 . + . ID=gene3945;Name=SH04_RS19775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19775;old_locus_tag=SH04_19785 NZ_CP010443.1 Protein Homology CDS 4005358 4005897 . + 0 ID=cds3847;Parent=gene3945;Dbxref=Genbank:WP_000675733.1;Name=WP_000675733.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000675733.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4005919 4007106 . + . ID=gene3946;Name=SH04_RS19780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19780;old_locus_tag=SH04_19790 NZ_CP010443.1 Protein Homology CDS 4005919 4007106 . + 0 ID=cds3848;Parent=gene3946;Dbxref=Genbank:WP_000484600.1;Name=WP_000484600.1;gbkey=CDS;product=pentapetide repeats-related protein;protein_id=WP_000484600.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4007217 4007324 . + . ID=id207;gbkey=repeat_region NZ_CP010443.1 RefSeq repeat_region 4007386 4007742 . + . ID=id208;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4008129 4009274 . - . ID=gene3947;Name=SH04_RS19785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19785;old_locus_tag=SH04_19795 NZ_CP010443.1 Protein Homology CDS 4008129 4009274 . - 0 ID=cds3849;Parent=gene3947;Dbxref=Genbank:WP_001300387.1;Name=WP_001300387.1;gbkey=CDS;product=glycerate 2-kinase;protein_id=WP_001300387.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4009371 4010261 . - . ID=gene3948;Name=garR;gbkey=Gene;gene=garR;gene_biotype=protein_coding;locus_tag=SH04_RS19790;old_locus_tag=SH04_19800 NZ_CP010443.1 Protein Homology CDS 4009371 4010261 . - 0 ID=cds3850;Parent=gene3948;Dbxref=Genbank:WP_001303675.1;Name=WP_001303675.1;Note=catalyzes the reduction of tartronate semialdehyde to glycerate;gbkey=CDS;gene=garR;product=2-hydroxy-3-oxopropionate reductase;protein_id=WP_001303675.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4010291 4011061 . - . ID=gene3949;Name=SH04_RS19795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19795;old_locus_tag=SH04_19805 NZ_CP010443.1 Protein Homology CDS 4010291 4011061 . - 0 ID=cds3851;Parent=gene3949;Dbxref=Genbank:WP_001058209.1;Name=WP_001058209.1;Note=cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate;gbkey=CDS;product=5-keto-4-deoxy-D-glucarate aldolase;protein_id=WP_001058209.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4011077 4012411 . - . ID=gene3950;Name=SH04_RS19800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19800;old_locus_tag=SH04_19810 NZ_CP010443.1 Protein Homology CDS 4011077 4012411 . - 0 ID=cds3852;Parent=gene3950;Dbxref=Genbank:WP_000599636.1;Name=WP_000599636.1;gbkey=CDS;product=galactarate transporter;protein_id=WP_000599636.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4012786 4014357 . + . ID=gene3951;Name=garD;gbkey=Gene;gene=garD;gene_biotype=protein_coding;locus_tag=SH04_RS19805;old_locus_tag=SH04_19815 NZ_CP010443.1 Protein Homology CDS 4012786 4014357 . + 0 ID=cds3853;Parent=gene3951;Dbxref=Genbank:WP_001273753.1;Name=WP_001273753.1;Note=catalyzes the formation of 5-dehydro-4-deoxy-D-glucarate from D-galactarate;gbkey=CDS;gene=garD;product=D-galactarate dehydratase;protein_id=WP_001273753.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4014506 4014841 . + . ID=gene3952;Name=SH04_RS19810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19810;old_locus_tag=SH04_19820 NZ_CP010443.1 Protein Homology CDS 4014506 4014841 . + 0 ID=cds3854;Parent=gene3952;Dbxref=Genbank:WP_001307405.1;Name=WP_001307405.1;Note=SohA%3B PrlF%3B involved in protein secretion%3B when overproduced or mutated%2C it induces growth defect and increased export of a reporter protein%3B a PrlF mutation induces the activity of the Lon protease%2C and a Lon-deficient strain suppresses the phenotype conferred by the PrlF mutation;gbkey=CDS;product=antitoxin PrlF;protein_id=WP_001307405.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4014841 4015305 . + . ID=gene3953;Name=SH04_RS19815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19815;old_locus_tag=SH04_19825 NZ_CP010443.1 Protein Homology CDS 4014841 4015305 . + 0 ID=cds3855;Parent=gene3953;Dbxref=Genbank:WP_000347273.1;Name=WP_000347273.1;gbkey=CDS;product=toxin YhaV;protein_id=WP_000347273.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4015360 4016169 . - . ID=gene3954;Name=SH04_RS19820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19820;old_locus_tag=SH04_19830 NZ_CP010443.1 Protein Homology CDS 4015360 4016169 . - 0 ID=cds3856;Parent=gene3954;Dbxref=Genbank:WP_000072187.1;Name=WP_000072187.1;Note=transcriptional repressor for the agaZVWA and agaSYBCDI operons;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_000072187.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4016418 4017698 . + . ID=gene3955;Name=SH04_RS19825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19825;old_locus_tag=SH04_19835 NZ_CP010443.1 Protein Homology CDS 4016418 4017698 . + 0 ID=cds3857;Parent=gene3955;Dbxref=Genbank:WP_000681920.1;Name=WP_000681920.1;Note=with KbaY catalyzes the formation of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate from tagatose-1%2C6-bisphosphate%3B subunit Z may act as a chaperone for the Y subunit;gbkey=CDS;product=tagatose-1%2C6-bisphosphate aldolase;protein_id=WP_000681920.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4017721 4018194 . + . ID=gene3956;Name=SH04_RS19830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19830;old_locus_tag=SH04_19840 NZ_CP010443.1 Protein Homology CDS 4017721 4018194 . + 0 ID=cds3858;Parent=gene3956;Dbxref=Genbank:WP_001336162.1;Name=WP_001336162.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake%3B involved in N-acetylgalactosamine transport;gbkey=CDS;product=N-acetylgalactosamine-specific phosphotransferase enzyme IIB component 2;protein_id=WP_001336162.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4018205 4018606 . + . ID=gene3957;Name=SH04_RS19835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19835;old_locus_tag=SH04_19845 NZ_CP010443.1 Protein Homology CDS 4018205 4018606 . + 0 ID=cds3859;Parent=gene3957;Dbxref=Genbank:WP_000406204.1;Name=WP_000406204.1;gbkey=CDS;product=N-acetylgalactosamine permease IIC protein 2;protein_id=WP_000406204.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4018626 4019129 . + . ID=gene3958;Name=SH04_RS19840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19840;old_locus_tag=SH04_19850 NZ_CP010443.1 Protein Homology CDS 4018626 4019129 . + 0 ID=cds3860;Parent=gene3958;Dbxref=Genbank:WP_001485507.1;Name=WP_001485507.1;gbkey=CDS;product=N-acetylgalactosamine-6-phosphate deacetylase;protein_id=WP_001485507.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4019480 4020634 . + . ID=gene3959;Name=SH04_RS19845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19845;old_locus_tag=SH04_19855 NZ_CP010443.1 Protein Homology CDS 4019480 4020634 . + 0 ID=cds3861;Parent=gene3959;Dbxref=Genbank:WP_001114869.1;Name=WP_001114869.1;gbkey=CDS;product=tagatose-6-phosphate ketose isomerase;protein_id=WP_001114869.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4020647 4021507 . + . ID=gene3960;Name=kbaY;gbkey=Gene;gene=kbaY;gene_biotype=protein_coding;gene_synonym=agaY;locus_tag=SH04_RS19850;old_locus_tag=SH04_19860 NZ_CP010443.1 Protein Homology CDS 4020647 4021507 . + 0 ID=cds3862;Parent=gene3960;Dbxref=Genbank:WP_000022766.1;Name=WP_000022766.1;Note=catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1%2C6-bisphosphate%3B in enteric bacteria there are two D-tagatose 1%2C6-bisphosphate-specific aldolases: KbaY (also called AgaY)%2C involved in catabolism of N-acetyl-galactosamine and D-galactosamine%2C and GatY which is part of the galactitol catabolism pathway;gbkey=CDS;gene=kbaY;product=tagatose-1%2C6-bisphosphate aldolase;protein_id=WP_000022766.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4021674 4022150 . + . ID=gene3961;Name=SH04_RS19855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19855;old_locus_tag=SH04_19865 NZ_CP010443.1 Protein Homology CDS 4021674 4022150 . + 0 ID=cds3863;Parent=gene3961;Dbxref=Genbank:WP_000203711.1;Name=WP_000203711.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake%3B involved in N-acetylgalactosamine transport;gbkey=CDS;product=N-acetylgalactosamine-specific phosphotransferase enzyme IIB component 1;protein_id=WP_000203711.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4022189 4022992 . + . ID=gene3962;Name=SH04_RS19860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19860;old_locus_tag=SH04_19870 NZ_CP010443.1 Protein Homology CDS 4022189 4022992 . + 0 ID=cds3864;Parent=gene3962;Dbxref=Genbank:WP_000544489.1;Name=WP_000544489.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3Bprotein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake%3B involved in N-acetylgalactosamine transport;gbkey=CDS;product=N-acetylgalactosamine permease IIC component 1;protein_id=WP_000544489.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4022982 4023773 . + . ID=gene3963;Name=SH04_RS19865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19865;old_locus_tag=SH04_19875 NZ_CP010443.1 Protein Homology CDS 4022982 4023773 . + 0 ID=cds3865;Parent=gene3963;Dbxref=Genbank:WP_000534347.1;Name=WP_000534347.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IID with IIC forms the translocation channel%3B involved in N-acetylgalactosamine transport;gbkey=CDS;product=N-acetylgalactosamine permease IID component;protein_id=WP_000534347.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4023828 4024529 . + . ID=gene3964;Name=SH04_RS19870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19870;old_locus_tag=SH04_19880 NZ_CP010443.1 Protein Homology CDS 4023828 4024529 . + 0 ID=cds3866;Parent=gene3964;Dbxref=Genbank:WP_038432662.1;Name=WP_038432662.1;gbkey=CDS;product=galactosamine-6-phosphate isomerase;protein_id=WP_038432662.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4024930 4025514 . + . ID=gene3965;Name=SH04_RS19875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19875;old_locus_tag=SH04_19885 NZ_CP010443.1 Protein Homology CDS 4024930 4025514 . + 0 ID=cds3867;Parent=gene3965;Dbxref=Genbank:WP_001045432.1;Name=WP_001045432.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_001045432.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4025594 4026289 . + . ID=gene3966;Name=SH04_RS19880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19880;old_locus_tag=SH04_19890 NZ_CP010443.1 Protein Homology CDS 4025594 4026289 . + 0 ID=cds3868;Parent=gene3966;Dbxref=Genbank:WP_000044775.1;Name=WP_000044775.1;gbkey=CDS;product=fimbrial chaperone;protein_id=WP_000044775.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4026318 4028834 . + . ID=gene3967;Name=SH04_RS19885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19885;old_locus_tag=SH04_19895 NZ_CP010443.1 Protein Homology CDS 4026318 4028834 . + 0 ID=cds3869;Parent=gene3967;Dbxref=Genbank:WP_001355538.1;Name=WP_001355538.1;gbkey=CDS;product=outer membrane usher protein YraJ;protein_id=WP_001355538.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4028845 4029936 . + . ID=gene3968;Name=SH04_RS19890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19890;old_locus_tag=SH04_19900 NZ_CP010443.1 Protein Homology CDS 4028845 4029936 . + 0 ID=cds3870;Parent=gene3968;Dbxref=Genbank:WP_000816992.1;Name=WP_000816992.1;gbkey=CDS;product=fimbrial-like adhesin protein;protein_id=WP_000816992.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4029979 4030839 . - . ID=gene3969;Name=SH04_RS19895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19895;old_locus_tag=SH04_19905 NZ_CP010443.1 Protein Homology CDS 4029979 4030839 . - 0 ID=cds3871;Parent=gene3969;Dbxref=Genbank:WP_000809262.1;Name=WP_000809262.1;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase I;protein_id=WP_000809262.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4030904 4032940 . + . ID=gene3970;Name=SH04_RS19900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19900;old_locus_tag=SH04_19910 NZ_CP010443.1 Protein Homology CDS 4030904 4032940 . + 0 ID=cds3872;Parent=gene3970;Dbxref=Genbank:WP_000249104.1;Name=WP_000249104.1;gbkey=CDS;product=penicillin-binding protein activator LpoA;protein_id=WP_000249104.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4032898 4033293 . + . ID=gene3971;Name=SH04_RS19905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19905;old_locus_tag=SH04_19915 NZ_CP010443.1 Protein Homology CDS 4032898 4033293 . + 0 ID=cds3873;Parent=gene3971;Dbxref=Genbank:WP_000246830.1;Name=WP_000246830.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000246830.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4033313 4033903 . + . ID=gene3972;Name=SH04_RS19910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19910;old_locus_tag=SH04_19920 NZ_CP010443.1 Protein Homology CDS 4033313 4033903 . + 0 ID=cds3874;Parent=gene3972;Dbxref=Genbank:WP_001158034.1;Name=WP_001158034.1;Note=Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein;gbkey=CDS;product=DnaA initiator-associating protein DiaA;protein_id=WP_001158034.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4033913 4034488 . + . ID=gene3973;Name=SH04_RS19915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19915;old_locus_tag=SH04_19925 NZ_CP010443.1 Protein Homology CDS 4033913 4034488 . + 0 ID=cds3875;Parent=gene3973;Dbxref=Genbank:WP_000646033.1;Name=WP_000646033.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000646033.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4034602 4035642 . - . ID=gene3974;Name=SH04_RS19920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19920;old_locus_tag=SH04_19930 NZ_CP010443.1 Protein Homology CDS 4034602 4035642 . - 0 ID=cds3876;Parent=gene3974;Dbxref=Genbank:WP_000147574.1;Name=WP_000147574.1;gbkey=CDS;product=permease;protein_id=WP_000147574.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4035715 4036350 . - . ID=gene3975;Name=SH04_RS19925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19925;old_locus_tag=SH04_19935 NZ_CP010443.1 Protein Homology CDS 4035715 4036350 . - 0 ID=cds3877;Parent=gene3975;Dbxref=Genbank:WP_001300423.1;Name=WP_001300423.1;gbkey=CDS;product=nucleoside-diphosphate-sugar epimerase;protein_id=WP_001300423.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4036478 4036996 . + . ID=gene3976;Name=SH04_RS19930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19930;old_locus_tag=SH04_19940 NZ_CP010443.1 Protein Homology CDS 4036478 4036996 . + 0 ID=cds3878;Parent=gene3976;Dbxref=Genbank:WP_000037608.1;Name=WP_000037608.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000037608.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4036976 4037419 . - . ID=gene3977;Name=SH04_RS19935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19935;old_locus_tag=SH04_19945 NZ_CP010443.1 Protein Homology CDS 4036976 4037419 . - 0 ID=cds3879;Parent=gene3977;Dbxref=Genbank:WP_000449030.1;Name=WP_000449030.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000449030.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4037470 4037772 . + . ID=gene3978;Name=SH04_RS19940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19940;old_locus_tag=SH04_19950 NZ_CP010443.1 Protein Homology CDS 4037470 4037772 . + 0 ID=cds3880;Parent=gene3978;Dbxref=Genbank:WP_000189333.1;Name=WP_000189333.1;gbkey=CDS;product=nuclease superfamily protein;protein_id=WP_000189333.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4037759 4038262 . - . ID=gene3979;Name=SH04_RS19945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19945;old_locus_tag=SH04_19955 NZ_CP010443.1 Protein Homology CDS 4037759 4038262 . - 0 ID=cds3881;Parent=gene3979;Dbxref=Genbank:WP_000908554.1;Name=WP_000908554.1;gbkey=CDS;product=N-acetyltransferase;protein_id=WP_000908554.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4038256 4038780 . - . ID=gene3980;Name=SH04_RS19950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19950;old_locus_tag=SH04_19960 NZ_CP010443.1 Protein Homology CDS 4038256 4038780 . - 0 ID=cds3882;Parent=gene3980;Dbxref=Genbank:WP_001295552.1;Name=WP_001295552.1;gbkey=CDS;product=SCP-2 sterol transfer family protein;protein_id=WP_001295552.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4038989 4039984 . + . ID=gene3981;Name=SH04_RS19955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19955;old_locus_tag=SH04_19965 NZ_CP010443.1 Protein Homology CDS 4038989 4039984 . + 0 ID=cds3883;Parent=gene3981;Dbxref=Genbank:WP_001311152.1;Name=WP_001311152.1;gbkey=CDS;product=U32 peptidase;protein_id=WP_001311152.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4039993 4040871 . + . ID=gene3982;Name=SH04_RS19960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19960;old_locus_tag=SH04_19970 NZ_CP010443.1 Protein Homology CDS 4039993 4040871 . + 0 ID=cds3884;Parent=gene3982;Dbxref=Genbank:WP_001301318.1;Name=WP_001301318.1;gbkey=CDS;product=U32 peptidase;protein_id=WP_001301318.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4040952 4041959 . + . ID=gene3983;Name=SH04_RS19965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19965;old_locus_tag=SH04_19975 NZ_CP010443.1 Protein Homology CDS 4040952 4041959 . + 0 ID=cds3885;Parent=gene3983;Dbxref=Genbank:WP_000130380.1;Name=WP_000130380.1;gbkey=CDS;product=luciferase-like monooxygenase;protein_id=WP_000130380.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4042077 4043321 . - . ID=gene3984;Name=SH04_RS19970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19970;old_locus_tag=SH04_19980 NZ_CP010443.1 Protein Homology CDS 4042077 4043321 . - 0 ID=cds3886;Parent=gene3984;Dbxref=Genbank:WP_000224351.1;Name=WP_000224351.1;Note=tryptophan transporter of high affinity;gbkey=CDS;product=tryptophan-specific transporter;protein_id=WP_000224351.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4043337 4043474 . + . ID=gene3985;Name=SH04_RS19975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19975;old_locus_tag=SH04_19985 NZ_CP010443.1 Protein Homology CDS 4043337 4043474 . + 0 ID=cds3887;Parent=gene3985;Dbxref=Genbank:WP_000797816.1;Name=WP_000797816.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000797816.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4043475 4045364 . - . ID=gene3986;Name=SH04_RS19980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19980;old_locus_tag=SH04_19990 NZ_CP010443.1 Protein Homology CDS 4043475 4045364 . - 0 ID=cds3888;Parent=gene3986;Dbxref=Genbank:WP_001295553.1;Name=WP_001295553.1;Note=participates in the assembly of the large subunit of the ribosome%3B plays a key role in optimal cell growth at low temperature and is required for normal cell division;gbkey=CDS;product=DEAD/DEAH box family ATP-dependent RNA helicase;protein_id=WP_001295553.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4045544 4046428 . - . ID=gene3987;Name=SH04_RS19985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19985;old_locus_tag=SH04_19995 NZ_CP010443.1 Protein Homology CDS 4045544 4046428 . - 0 ID=cds3889;Parent=gene3987;Dbxref=Genbank:WP_000802080.1;Name=WP_000802080.1;Note=lipoprotein that appears to be involved in cell division%3B interacts with the periplasmic protease Prc and may be activated by protease processing;gbkey=CDS;product=lipoprotein NlpI;protein_id=WP_000802080.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4046537 4048672 . - . ID=gene3988;Name=SH04_RS19990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19990;old_locus_tag=SH04_20000 NZ_CP010443.1 Protein Homology CDS 4046537 4048672 . - 0 ID=cds3890;Parent=gene3988;Dbxref=Genbank:WP_001295554.1;Name=WP_001295554.1;gbkey=CDS;product=polyribonucleotide nucleotidyltransferase;protein_id=WP_001295554.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4048919 4049188 . - . ID=gene3989;Name=SH04_RS19995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS19995;old_locus_tag=SH04_20005 NZ_CP010443.1 Protein Homology CDS 4048919 4049188 . - 0 ID=cds3891;Parent=gene3989;Dbxref=Genbank:WP_000059466.1;Name=WP_000059466.1;gbkey=CDS;product=30S ribosomal protein S15;protein_id=WP_000059466.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4049337 4050281 . - . ID=gene3990;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=SH04_RS20000;old_locus_tag=SH04_20010 NZ_CP010443.1 Protein Homology CDS 4049337 4050281 . - 0 ID=cds3892;Parent=gene3990;Dbxref=Genbank:WP_000089698.1;Name=WP_000089698.1;Note=catalyzes isomerization of specific uridines in RNA to pseudouridine%3B responsible for residues in T loops of many tRNAs;gbkey=CDS;gene=truB;product=tRNA pseudouridine synthase B;protein_id=WP_000089698.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4050281 4050682 . - . ID=gene3991;Name=rbfA;gbkey=Gene;gene=rbfA;gene_biotype=protein_coding;locus_tag=SH04_RS20005;old_locus_tag=SH04_20015 NZ_CP010443.1 Protein Homology CDS 4050281 4050682 . - 0 ID=cds3893;Parent=gene3991;Dbxref=Genbank:WP_001040205.1;Name=WP_001040205.1;Note=associates with free 30S ribosomal subunits%3B essential for efficient processing of 16S rRNA%3B in Escherichia coli rbfA is induced by cold shock;gbkey=CDS;gene=rbfA;product=ribosome-binding factor A;protein_id=WP_001040205.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4050846 4053518 . - . ID=gene3992;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;locus_tag=SH04_RS20010;old_locus_tag=SH04_20020 NZ_CP010443.1 Protein Homology CDS 4050846 4053518 . - 0 ID=cds3894;Parent=gene3992;Dbxref=Genbank:WP_000133044.1;Name=WP_000133044.1;Note=Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex;gbkey=CDS;gene=infB;product=translation initiation factor IF-2;protein_id=WP_000133044.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4053543 4055030 . - . ID=gene3993;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=SH04_RS20015;old_locus_tag=SH04_20025 NZ_CP010443.1 Protein Homology CDS 4053543 4055030 . - 0 ID=cds3895;Parent=gene3993;Dbxref=Genbank:WP_001031057.1;Name=WP_001031057.1;Note=modifies transcription through interactions with RNA polymerase affecting elongation%2C readthrough%2C termination%2C and antitermination;gbkey=CDS;gene=nusA;product=transcription termination/antitermination protein NusA;protein_id=WP_001031057.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4055058 4055510 . - . ID=gene3994;Name=SH04_RS20020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20020;old_locus_tag=SH04_20030 NZ_CP010443.1 Protein Homology CDS 4055058 4055510 . - 0 ID=cds3896;Parent=gene3994;Dbxref=Genbank:WP_001300397.1;Name=WP_001300397.1;Note=required for the maturation of the 30S ribosomal subunits;gbkey=CDS;product=ribosome maturation factor RimP;protein_id=WP_001300397.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4055717 4055793 . - . ID=gene3995;Name=SH04_RS20025;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS20025;old_locus_tag=SH04_20035 NZ_CP010443.1 tRNAscan-SE tRNA 4055717 4055793 . - . ID=rna98;Parent=gene3995;anticodon=(pos:complement(4055757..4055759));gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 tRNAscan-SE exon 4055717 4055793 . - . ID=id209;Parent=rna98;anticodon=(pos:complement(4055757..4055759));gbkey=tRNA;product=tRNA-Met NZ_CP010443.1 RefSeq gene 4056141 4057484 . + . ID=gene3996;Name=SH04_RS20030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20030;old_locus_tag=SH04_20040 NZ_CP010443.1 Protein Homology CDS 4056141 4057484 . + 0 ID=cds3897;Parent=gene3996;Dbxref=Genbank:WP_000207680.1;Name=WP_000207680.1;Note=catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis;gbkey=CDS;product=argininosuccinate synthase;protein_id=WP_000207680.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4057492 4059009 . - . ID=gene3997;Name=SH04_RS20035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20035;old_locus_tag=SH04_20045 NZ_CP010443.1 Protein Homology CDS 4057492 4059009 . - 0 ID=cds3898;Parent=gene3997;Dbxref=Genbank:WP_000250685.1;Name=WP_000250685.1;gbkey=CDS;product=phosphate starvation-inducible protein PsiE;protein_id=WP_000250685.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4059576 4059662 . - . ID=gene3998;Name=SH04_RS20040;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS20040;old_locus_tag=SH04_20050 NZ_CP010443.1 tRNAscan-SE tRNA 4059576 4059662 . - . ID=rna99;Parent=gene3998;anticodon=(pos:complement(4059626..4059628));gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 tRNAscan-SE exon 4059576 4059662 . - . ID=id210;Parent=rna99;anticodon=(pos:complement(4059626..4059628));gbkey=tRNA;product=tRNA-Leu NZ_CP010443.1 RefSeq gene 4059677 4060009 . - . ID=gene3999;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=SH04_RS20045;old_locus_tag=SH04_20055 NZ_CP010443.1 Protein Homology CDS 4059677 4060009 . - 0 ID=cds3899;Parent=gene3999;Dbxref=Genbank:WP_001295556.1;Name=WP_001295556.1;gbkey=CDS;gene=secG;product=protein-export membrane protein SecG;protein_id=WP_001295556.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4060237 4061574 . - . ID=gene4000;Name=glmM;gbkey=Gene;gene=glmM;gene_biotype=protein_coding;locus_tag=SH04_RS20050;old_locus_tag=SH04_20060 NZ_CP010443.1 Protein Homology CDS 4060237 4061574 . - 0 ID=cds3900;Parent=gene4000;Dbxref=Genbank:WP_000071134.1;Name=WP_000071134.1;Note=catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate;gbkey=CDS;gene=glmM;product=phosphoglucosamine mutase;protein_id=WP_000071134.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4061567 4062415 . - . ID=gene4001;Name=folP;gbkey=Gene;gene=folP;gene_biotype=protein_coding;locus_tag=SH04_RS20055;old_locus_tag=SH04_20065 NZ_CP010443.1 Protein Homology CDS 4061567 4062415 . - 0 ID=cds3901;Parent=gene4001;Dbxref=Genbank:WP_000764731.1;Name=WP_000764731.1;Note=catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7%2C8-dihydropteridine diphosphate and 4-aminobenzoate;gbkey=CDS;gene=folP;product=dihydropteroate synthase;protein_id=WP_000764731.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4062505 4064439 . - . ID=gene4002;Name=hflB;gbkey=Gene;gene=hflB;gene_biotype=protein_coding;gene_synonym=ftsH;locus_tag=SH04_RS20060;old_locus_tag=SH04_20070 NZ_CP010443.1 Protein Homology CDS 4062505 4064439 . - 0 ID=cds3902;Parent=gene4002;Dbxref=Genbank:WP_001107467.1;Name=WP_001107467.1;Note=inner membrane metalloprotease%3B may be involved in degradation of aberrant cytoplasmic and membrane proteins;gbkey=CDS;gene=hflB;product=ATP-dependent zinc metalloprotease FtsH;protein_id=WP_001107467.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4064539 4065168 . - . ID=gene4003;Name=rrmJ;gbkey=Gene;gene=rrmJ;gene_biotype=protein_coding;locus_tag=SH04_RS20065;old_locus_tag=SH04_20075 NZ_CP010443.1 Protein Homology CDS 4064539 4065168 . - 0 ID=cds3903;Parent=gene4003;Dbxref=Genbank:WP_000145975.1;Name=WP_000145975.1;Note=Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit;gbkey=CDS;gene=rrmJ;product=ribosomal RNA large subunit methyltransferase E;protein_id=WP_000145975.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4065294 4065587 . + . ID=gene4004;Name=SH04_RS20070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20070;old_locus_tag=SH04_20080 NZ_CP010443.1 Protein Homology CDS 4065294 4065587 . + 0 ID=cds3904;Parent=gene4004;Dbxref=Genbank:WP_001054420.1;Name=WP_001054420.1;Note=RNA binding protein found associated to pre-50S subunit of the ribosome%3B putative role in ribosome assembly%3B necessary for optimal growth but not cell viability;gbkey=CDS;product=RNA-binding protein;protein_id=WP_001054420.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4065743 4066219 . - . ID=gene4005;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=SH04_RS20075;old_locus_tag=SH04_20085 NZ_CP010443.1 Protein Homology CDS 4065743 4066219 . - 0 ID=cds3905;Parent=gene4005;Dbxref=Genbank:WP_001148001.1;Name=WP_001148001.1;Note=necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites%3B arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through%2C resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus;gbkey=CDS;gene=greA;product=transcription elongation factor GreA;protein_id=WP_001148001.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4066467 4067900 . + . ID=gene4006;Name=SH04_RS20080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20080;old_locus_tag=SH04_20090 NZ_CP010443.1 Protein Homology CDS 4066467 4067900 . + 0 ID=cds3906;Parent=gene4006;Dbxref=Genbank:WP_001212622.1;Name=WP_001212622.1;Note=penicillin binding protein 4%3B penicillin sensitive%3B catalyzes the formation of D-alanine from D-alanyl-D-alanine%3B one of four%2C DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains;gbkey=CDS;product=D-alanyl-D-alanine carboxypeptidase;protein_id=WP_001212622.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4068086 4069258 . - . ID=gene4007;Name=obgE;gbkey=Gene;gene=obgE;gene_biotype=protein_coding;gene_synonym=cgtA,obg,yhbZ;locus_tag=SH04_RS20085;old_locus_tag=SH04_20095 NZ_CP010443.1 Protein Homology CDS 4068086 4069258 . - 0 ID=cds3907;Parent=gene4007;Dbxref=Genbank:WP_000673575.1;Name=WP_000673575.1;Note=ObgE%3B essential GTPase%3B exhibits high exchange rate for GTP/GDP%3B associates with 50S ribosomal subunit%3B involved in regulation of chromosomal replication;gbkey=CDS;gene=obgE;product=GTPase CgtA;protein_id=WP_000673575.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4069274 4070239 . - . ID=gene4008;Name=SH04_RS20090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20090;old_locus_tag=SH04_20100 NZ_CP010443.1 Protein Homology CDS 4069274 4070239 . - 0 ID=cds3908;Parent=gene4008;Dbxref=Genbank:WP_000813037.1;Name=WP_000813037.1;gbkey=CDS;product=transporter;protein_id=WP_000813037.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4070366 4070623 . - . ID=gene4009;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=SH04_RS20095;old_locus_tag=SH04_20105 NZ_CP010443.1 Protein Homology CDS 4070366 4070623 . - 0 ID=cds3909;Parent=gene4009;Dbxref=Genbank:WP_000940595.1;Name=WP_000940595.1;Note=involved in the peptidyltransferase reaction during translation;gbkey=CDS;gene=rpmA;product=50S ribosomal protein L27;protein_id=WP_000940595.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4070644 4070955 . - . ID=gene4010;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=SH04_RS20100;old_locus_tag=SH04_20110 NZ_CP010443.1 Protein Homology CDS 4070644 4070955 . - 0 ID=cds3910;Parent=gene4010;Dbxref=Genbank:WP_000271401.1;Name=WP_000271401.1;gbkey=CDS;gene=rplU;product=50S ribosomal protein L21;protein_id=WP_000271401.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4071214 4072185 . + . ID=gene4011;Name=SH04_RS20105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20105;old_locus_tag=SH04_20115 NZ_CP010443.1 Protein Homology CDS 4071214 4072185 . + 0 ID=cds3911;Parent=gene4011;Dbxref=Genbank:WP_001047336.1;Name=WP_001047336.1;gbkey=CDS;product=octaprenyl-diphosphate synthase;protein_id=WP_001047336.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4072413 4072691 . + . ID=gene4012;Name=SH04_RS20110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20110;old_locus_tag=SH04_20120 NZ_CP010443.1 Protein Homology CDS 4072413 4072691 . + 0 ID=cds3912;Parent=gene4012;Dbxref=Genbank:WP_000445413.1;Name=WP_000445413.1;Note=activator of maltose metabolism genes;gbkey=CDS;product=sugar fermentation stimulation protein B;protein_id=WP_000445413.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4072739 4073998 . - . ID=gene4013;Name=SH04_RS20115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20115;old_locus_tag=SH04_20125 NZ_CP010443.1 Protein Homology CDS 4072739 4073998 . - 0 ID=cds3913;Parent=gene4013;Dbxref=Genbank:WP_000357259.1;Name=WP_000357259.1;gbkey=CDS;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=WP_000357259.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4074053 4074307 . - . ID=gene4014;Name=SH04_RS20120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20120;old_locus_tag=SH04_20130 NZ_CP010443.1 Protein Homology CDS 4074053 4074307 . - 0 ID=cds3914;Parent=gene4014;Dbxref=Genbank:WP_000429656.1;Name=WP_000429656.1;gbkey=CDS;product=acid stress protein IbaG;protein_id=WP_000429656.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4074467 4074760 . - . ID=gene4015;Name=SH04_RS20125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20125;old_locus_tag=SH04_20135 NZ_CP010443.1 Protein Homology CDS 4074467 4074760 . - 0 ID=cds3915;Parent=gene4015;Dbxref=Genbank:WP_000004488.1;Name=WP_000004488.1;gbkey=CDS;product=phospholipid ABC transporter-binding protein;protein_id=WP_000004488.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4074760 4075395 . - . ID=gene4016;Name=SH04_RS20130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20130;old_locus_tag=SH04_20140 NZ_CP010443.1 Protein Homology CDS 4074760 4075395 . - 0 ID=cds3916;Parent=gene4016;Dbxref=Genbank:WP_000476487.1;Name=WP_000476487.1;Note=involved in maintaining outer membrane lipid asymmetry;gbkey=CDS;product=phospholipid-binding protein;protein_id=WP_000476487.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4075414 4075965 . - . ID=gene4017;Name=SH04_RS20135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20135;old_locus_tag=SH04_20145 NZ_CP010443.1 Protein Homology CDS 4075414 4075965 . - 0 ID=cds3917;Parent=gene4017;Dbxref=Genbank:WP_001296448.1;Name=WP_001296448.1;gbkey=CDS;product=outer membrane lipid asymmetry maintenance protein MlaD;protein_id=WP_001296448.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4075970 4076752 . - . ID=gene4018;Name=SH04_RS20140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20140;old_locus_tag=SH04_20150 NZ_CP010443.1 Protein Homology CDS 4075970 4076752 . - 0 ID=cds3918;Parent=gene4018;Dbxref=Genbank:WP_000925795.1;Name=WP_000925795.1;gbkey=CDS;product=phospholipid ABC transporter permease;protein_id=WP_000925795.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4076760 4077569 . - . ID=gene4019;Name=SH04_RS20145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20145;old_locus_tag=SH04_20155 NZ_CP010443.1 Protein Homology CDS 4076760 4077569 . - 0 ID=cds3919;Parent=gene4019;Dbxref=Genbank:WP_000438245.1;Name=WP_000438245.1;Note=ABC transporter maintaining outer membrane lipid asymmetry;gbkey=CDS;product=phospholipid import ATP-binding protein;protein_id=WP_000438245.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4077779 4078756 . + . ID=gene4020;Name=SH04_RS20150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20150;old_locus_tag=SH04_20160 NZ_CP010443.1 Protein Homology CDS 4077779 4078756 . + 0 ID=cds3920;Parent=gene4020;Dbxref=Genbank:WP_000922901.1;Name=WP_000922901.1;Note=YrbG%3B inner membrane protein involved in cell envelope integrity%3B putative sodium ion/calcium ion exchanger%3B in E. coli it is non essential for cell viability%3B member of the YRBG family of cation/Ca2+ exchangers;gbkey=CDS;product=hypothetical protein;protein_id=WP_000922901.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4078770 4079756 . + . ID=gene4021;Name=SH04_RS20155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20155;old_locus_tag=SH04_20165 NZ_CP010443.1 Protein Homology CDS 4078770 4079756 . + 0 ID=cds3921;Parent=gene4021;Dbxref=Genbank:WP_001295557.1;Name=WP_001295557.1;gbkey=CDS;product=arabinose 5-phosphate isomerase KdsD;protein_id=WP_001295557.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4079777 4080343 . + . ID=gene4022;Name=SH04_RS20160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20160;old_locus_tag=SH04_20170 NZ_CP010443.1 Protein Homology CDS 4079777 4080343 . + 0 ID=cds3922;Parent=gene4022;Dbxref=Genbank:WP_000030005.1;Name=WP_000030005.1;Note=forms homotetramers%3B catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate%3B functions in lipopolysaccharide biosynthesis;gbkey=CDS;product=3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC;protein_id=WP_000030005.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4080340 4080915 . + . ID=gene4023;Name=SH04_RS20165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20165;old_locus_tag=SH04_20175 NZ_CP010443.1 Protein Homology CDS 4080340 4080915 . + 0 ID=cds3923;Parent=gene4023;Dbxref=Genbank:WP_000030537.1;Name=WP_000030537.1;gbkey=CDS;product=LPS export ABC transporter periplasmic protein LptC;protein_id=WP_000030537.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4080884 4081441 . + . ID=gene4024;Name=SH04_RS20170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20170;old_locus_tag=SH04_20180 NZ_CP010443.1 Protein Homology CDS 4080884 4081441 . + 0 ID=cds3924;Parent=gene4024;Dbxref=Genbank:WP_000669785.1;Name=WP_000669785.1;Note=LptA%3B periplasmic binding protein part of a putative ABC superfamily of uptake transporters%3B interacts with LptB protein%2C the ATP binding component of the uptake system;gbkey=CDS;product=LPS export system protein LptA;protein_id=WP_000669785.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4081448 4082173 . + . ID=gene4025;Name=SH04_RS20175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20175;old_locus_tag=SH04_20185 NZ_CP010443.1 Protein Homology CDS 4081448 4082173 . + 0 ID=cds3925;Parent=gene4025;Dbxref=Genbank:WP_000224099.1;Name=WP_000224099.1;gbkey=CDS;product=LPS export ABC transporter ATP-binding protein;protein_id=WP_000224099.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4082221 4083654 . + . ID=gene4026;Name=SH04_RS20180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20180;old_locus_tag=SH04_20190 NZ_CP010443.1 Protein Homology CDS 4082221 4083654 . + 0 ID=cds3926;Parent=gene4026;Dbxref=Genbank:WP_000809057.1;Name=WP_000809057.1;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism%3B the rhizobia often have 2 copies of this sigma factor%3B in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation%3B in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions%2C rpoN1 gene was regulated in response to oxygen;gbkey=CDS;product=RNA polymerase sigma-54 factor;protein_id=WP_000809057.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4083677 4083964 . + . ID=gene4027;Name=SH04_RS20185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20185;old_locus_tag=SH04_20195 NZ_CP010443.1 Protein Homology CDS 4083677 4083964 . + 0 ID=cds3927;Parent=gene4027;Dbxref=Genbank:WP_001176599.1;Name=WP_001176599.1;Note=YhbH%3B resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase%3B binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization)%3B seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing;gbkey=CDS;product=ribosome hibernation promoting factor;protein_id=WP_001176599.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4084082 4084573 . + . ID=gene4028;Name=SH04_RS20190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20190;old_locus_tag=SH04_20200 NZ_CP010443.1 Protein Homology CDS 4084082 4084573 . + 0 ID=cds3928;Parent=gene4028;Dbxref=Genbank:WP_000183676.1;Name=WP_000183676.1;Note=involved in nitrogen metabolism%3B protein IIA is phosphorylated by enzyme I(Ntr);gbkey=CDS;product=nitrogen regulatory protein;protein_id=WP_000183676.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4084619 4085473 . + . ID=gene4029;Name=SH04_RS20195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20195;old_locus_tag=SH04_20205 NZ_CP010443.1 Protein Homology CDS 4084619 4085473 . + 0 ID=cds3929;Parent=gene4029;Dbxref=Genbank:WP_000243741.1;Name=WP_000243741.1;Note=glucosamine-6-phosphate regulated%3B inactivates the glmS upregulator glmZ;gbkey=CDS;product=glmZ(sRNA)-inactivating NTPase;protein_id=WP_000243741.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4085470 4085742 . + . ID=gene4030;Name=SH04_RS20200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20200;old_locus_tag=SH04_20210 NZ_CP010443.1 Protein Homology CDS 4085470 4085742 . + 0 ID=cds3930;Parent=gene4030;Dbxref=Genbank:WP_000216791.1;Name=WP_000216791.1;gbkey=CDS;product=phosphocarrier protein NPr;protein_id=WP_000216791.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4085956 4086588 . + . ID=gene4031;Name=SH04_RS20205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20205;old_locus_tag=SH04_20215 NZ_CP010443.1 Protein Homology CDS 4085956 4086588 . + 0 ID=cds3931;Parent=gene4031;Dbxref=Genbank:WP_000620405.1;Name=WP_000620405.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000620405.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4086706 4087909 . + . ID=id211;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4086856 4087836 . - . ID=gene4032;Name=SH04_RS20210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20210;old_locus_tag=SH04_20220 NZ_CP010443.1 Protein Homology CDS 4086856 4087836 . - 0 ID=cds3932;Parent=gene4032;Dbxref=Genbank:WP_000019403.1;Name=WP_000019403.1;gbkey=CDS;product=transposase;protein_id=WP_000019403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4087835 4088083 . + . ID=gene4033;Name=SH04_RS20215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20215;old_locus_tag=SH04_20225 NZ_CP010443.1 Protein Homology CDS 4087835 4088083 . + 0 ID=cds3933;Parent=gene4033;Dbxref=Genbank:WP_000981817.1;Name=WP_000981817.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000981817.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4088080 4088796 . + . ID=gene4034;Name=SH04_RS20220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20220;old_locus_tag=SH04_20230 NZ_CP010443.1 Protein Homology CDS 4088080 4088796 . + 0 ID=cds3934;Parent=gene4034;Dbxref=Genbank:WP_001067008.1;Name=WP_001067008.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001067008.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4088981 4090108 . + . ID=gene4035;Name=SH04_RS20225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20225;old_locus_tag=SH04_20235 NZ_CP010443.1 Protein Homology CDS 4088981 4090108 . + 0 ID=cds3935;Parent=gene4035;Dbxref=Genbank:WP_000445111.1;Name=WP_000445111.1;gbkey=CDS;product=DUF1016 domain-containing protein;protein_id=WP_000445111.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4090168 4090632 . - . ID=gene4036;Name=SH04_RS20230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20230;old_locus_tag=SH04_20240 NZ_CP010443.1 Protein Homology CDS 4090168 4090632 . - 0 ID=cds3936;Parent=gene4036;Dbxref=Genbank:WP_000979882.1;Name=WP_000979882.1;gbkey=CDS;product=DUF386 domain-containing protein;protein_id=WP_000979882.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4090629 4091504 . - . ID=gene4037;Name=SH04_RS20235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20235;old_locus_tag=SH04_20245 NZ_CP010443.1 Protein Homology CDS 4090629 4091504 . - 0 ID=cds3937;Parent=gene4037;Dbxref=Genbank:WP_000209011.1;Name=WP_000209011.1;Note=catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein;gbkey=CDS;product=N-acetylmannosamine kinase;protein_id=WP_000209011.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4091501 4092190 . - . ID=gene4038;Name=SH04_RS20240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20240;old_locus_tag=SH04_20250 NZ_CP010443.1 Protein Homology CDS 4091501 4092190 . - 0 ID=cds3938;Parent=gene4038;Dbxref=Genbank:WP_000054239.1;Name=WP_000054239.1;Note=Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate;gbkey=CDS;product=N-acetylmannosamine-6-P epimerase;protein_id=WP_000054239.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4092238 4093728 . - . ID=gene4039;Name=SH04_RS20245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20245;old_locus_tag=SH04_20255 NZ_CP010443.1 Protein Homology CDS 4092238 4093728 . - 0 ID=cds3939;Parent=gene4039;Dbxref=Genbank:WP_000108454.1;Name=WP_000108454.1;gbkey=CDS;product=sialic acid transporter;protein_id=WP_000108454.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4093837 4094730 . - . ID=gene4040;Name=SH04_RS20250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20250;old_locus_tag=SH04_20260 NZ_CP010443.1 Protein Homology CDS 4093837 4094730 . - 0 ID=cds3940;Parent=gene4040;Dbxref=Genbank:WP_000224714.1;Name=WP_000224714.1;Note=catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid;gbkey=CDS;product=N-acetylneuraminate lyase;protein_id=WP_000224714.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4094852 4095643 . - . ID=gene4041;Name=SH04_RS20255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20255;old_locus_tag=SH04_20265 NZ_CP010443.1 Protein Homology CDS 4094852 4095643 . - 0 ID=cds3941;Parent=gene4041;Dbxref=Genbank:WP_000523845.1;Name=WP_000523845.1;Note=Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization;gbkey=CDS;product=transcriptional regulator NanR;protein_id=WP_000523845.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4096023 4097390 . + . ID=gene4042;Name=SH04_RS20260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20260;old_locus_tag=SH04_20270 NZ_CP010443.1 Protein Homology CDS 4096023 4097390 . + 0 ID=cds3942;Parent=gene4042;Dbxref=Genbank:WP_000467018.1;Name=WP_000467018.1;Note=YhcL%3B uncharacterized member of the DcuC family of anaerobic dicarboxylate transporters%3B probable role in transport of carboxylates across the inner membrane from the periplasm%3B its encoding gene is not essential for growth and is probably cryptic;gbkey=CDS;product=transporter;protein_id=WP_000467018.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4097433 4097930 . - . ID=gene4043;Name=SH04_RS20265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20265;old_locus_tag=SH04_20275 NZ_CP010443.1 Protein Homology CDS 4097433 4097930 . - 0 ID=cds3943;Parent=gene4043;Dbxref=Genbank:WP_000366129.1;Name=WP_000366129.1;gbkey=CDS;product=stringent starvation protein B;protein_id=WP_000366129.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4097936 4098574 . - . ID=gene4044;Name=sspA;gbkey=Gene;gene=sspA;gene_biotype=protein_coding;locus_tag=SH04_RS20270;old_locus_tag=SH04_20280 NZ_CP010443.1 Protein Homology CDS 4097936 4098574 . - 0 ID=cds3944;Parent=gene4044;Dbxref=Genbank:WP_000257293.1;Name=WP_000257293.1;Note=transcriptional activator%3B required for activation of bacteriophage P1 late promoter%3B induced by starvation;gbkey=CDS;gene=sspA;product=stringent starvation protein A;protein_id=WP_000257293.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4098969 4099361 . - . ID=gene4045;Name=SH04_RS20275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20275;old_locus_tag=SH04_20285 NZ_CP010443.1 Protein Homology CDS 4098969 4099361 . - 0 ID=cds3945;Parent=gene4045;Dbxref=Genbank:WP_000829818.1;Name=WP_000829818.1;gbkey=CDS;product=30S ribosomal protein S9;protein_id=WP_000829818.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4099377 4099805 . - . ID=gene4046;Name=SH04_RS20280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20280;old_locus_tag=SH04_20290 NZ_CP010443.1 Protein Homology CDS 4099377 4099805 . - 0 ID=cds3946;Parent=gene4046;Dbxref=Genbank:WP_000847559.1;Name=WP_000847559.1;gbkey=CDS;product=50S ribosomal protein L13;protein_id=WP_000847559.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4100024 4101151 . - . ID=gene4047;Name=SH04_RS20285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20285;old_locus_tag=SH04_20295 NZ_CP010443.1 Protein Homology CDS 4100024 4101151 . - 0 ID=cds3947;Parent=gene4047;Dbxref=Genbank:WP_001192332.1;Name=WP_001192332.1;gbkey=CDS;product=cell division protein ZapE;protein_id=WP_001192332.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4101345 4101743 . + . ID=gene4048;Name=SH04_RS20290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20290;old_locus_tag=SH04_20300 NZ_CP010443.1 Protein Homology CDS 4101345 4101743 . + 0 ID=cds3948;Parent=gene4048;Dbxref=Genbank:WP_001295270.1;Name=WP_001295270.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295270.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4101897 4103264 . + . ID=gene4049;Name=SH04_RS20295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20295;old_locus_tag=SH04_20305 NZ_CP010443.1 Protein Homology CDS 4101897 4103264 . + 0 ID=cds3949;Parent=gene4049;Dbxref=Genbank:WP_001295271.1;Name=WP_001295271.1;gbkey=CDS;product=periplasmic pH-dependent serine endoprotease DegQ;protein_id=WP_001295271.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4103354 4104421 . + . ID=gene4050;Name=SH04_RS20300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20300;old_locus_tag=SH04_20310 NZ_CP010443.1 Protein Homology CDS 4103354 4104421 . + 0 ID=cds3950;Parent=gene4050;Dbxref=Genbank:WP_000497723.1;Name=WP_000497723.1;gbkey=CDS;product=serine endoprotease DegS;protein_id=WP_000497723.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4104484 4105422 . - . ID=gene4051;Name=SH04_RS20305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20305;old_locus_tag=SH04_20315 NZ_CP010443.1 Protein Homology CDS 4104484 4105422 . - 0 ID=cds3951;Parent=gene4051;Dbxref=Genbank:WP_001295272.1;Name=WP_001295272.1;Note=oxidizes malate to oxaloacetate;gbkey=CDS;product=malate dehydrogenase;protein_id=WP_001295272.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4105857 4106327 . + . ID=gene4052;Name=SH04_RS20310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20310;old_locus_tag=SH04_20320 NZ_CP010443.1 Protein Homology CDS 4105857 4106327 . + 0 ID=cds3952;Parent=gene4052;Dbxref=Genbank:WP_001257846.1;Name=WP_001257846.1;Note=regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes;gbkey=CDS;product=arginine repressor;protein_id=WP_001257846.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4106692 4106955 . + . ID=gene4053;Name=SH04_RS20315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20315;old_locus_tag=SH04_20325 NZ_CP010443.1 Protein Homology CDS 4106692 4106955 . + 0 ID=cds3953;Parent=gene4053;Dbxref=Genbank:WP_000695690.1;Name=WP_000695690.1;gbkey=CDS;product=membrane protein;protein_id=WP_000695690.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4107011 4107283 . - . ID=gene4054;Name=SH04_RS20320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20320;old_locus_tag=SH04_20330 NZ_CP010443.1 Protein Homology CDS 4107011 4107283 . - 0 ID=cds3954;Parent=gene4054;Dbxref=Genbank:WP_001029013.1;Name=WP_001029013.1;gbkey=CDS;product=barnase inhibitor;protein_id=WP_001029013.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4107375 4109342 . - . ID=gene4055;Name=SH04_RS20325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20325;old_locus_tag=SH04_20335 NZ_CP010443.1 Protein Homology CDS 4107375 4109342 . - 0 ID=cds3955;Parent=gene4055;Dbxref=Genbank:WP_000510965.1;Name=WP_000510965.1;Note=with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate;gbkey=CDS;product=p-hydroxybenzoic acid efflux pump subunit AaeB;protein_id=WP_000510965.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4109348 4110280 . - . ID=gene4056;Name=SH04_RS20330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20330;old_locus_tag=SH04_20340 NZ_CP010443.1 Protein Homology CDS 4109348 4110280 . - 0 ID=cds3956;Parent=gene4056;Dbxref=Genbank:WP_000854021.1;Name=WP_000854021.1;Note=with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid%2C 6-hydroxy-2-naphthoic and 2-hydroxycinnamate;gbkey=CDS;product=p-hydroxybenzoic acid efflux pump subunit AaeA;protein_id=WP_000854021.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4110288 4110491 . - . ID=gene4057;Name=SH04_RS20335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20335;old_locus_tag=SH04_20345 NZ_CP010443.1 Protein Homology CDS 4110288 4110491 . - 0 ID=cds3957;Parent=gene4057;Dbxref=Genbank:WP_000051841.1;Name=WP_000051841.1;Note=membrane protein AaeX%3B the gene is a member of the aaeXAB operon;gbkey=CDS;product=protein AaeX;protein_id=WP_000051841.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4110674 4111603 . + . ID=gene4058;Name=SH04_RS20340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20340;old_locus_tag=SH04_20350 NZ_CP010443.1 Protein Homology CDS 4110674 4111603 . + 0 ID=cds3958;Parent=gene4058;Dbxref=Genbank:WP_000440317.1;Name=WP_000440317.1;Note=for aaeXAB operon;gbkey=CDS;product=HTH-type transcriptional activator AaeR;protein_id=WP_000440317.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4111737 4113182 . - . ID=gene4059;Name=tldD;gbkey=Gene;gene=tldD;gene_biotype=protein_coding;locus_tag=SH04_RS20345;old_locus_tag=SH04_20355 NZ_CP010443.1 Protein Homology CDS 4111737 4113182 . - 0 ID=cds3959;Parent=gene4059;Dbxref=Genbank:WP_000055909.1;Name=WP_000055909.1;Note=responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17%2C an exported protein that targets the essential topoisomerase II DNA gyrase%3B degrades the E. coli plasmid F-encoded CcdA;gbkey=CDS;gene=tldD;product=protease TldD;protein_id=WP_000055909.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4113224 4113547 . + . ID=id212;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4113612 4117412 . - . ID=gene4060;Name=SH04_RS20350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20350;old_locus_tag=SH04_20360 NZ_CP010443.1 Protein Homology CDS 4113612 4117412 . - 0 ID=cds3960;Parent=gene4060;Dbxref=Genbank:WP_038432666.1;Name=WP_038432666.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_038432666.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4117480 4118949 . - . ID=gene4061;Name=SH04_RS20355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20355;old_locus_tag=SH04_20365 NZ_CP010443.1 Protein Homology CDS 4117480 4118949 . - 0 ID=cds3961;Parent=gene4061;Dbxref=Genbank:WP_000123197.1;Name=WP_000123197.1;Note=involved in the processing of the 5'end of 16S rRNA;gbkey=CDS;product=ribonuclease G;protein_id=WP_000123197.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4118939 4119532 . - . ID=gene4062;Name=SH04_RS20360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20360;old_locus_tag=SH04_20370 NZ_CP010443.1 Protein Homology CDS 4118939 4119532 . - 0 ID=cds3962;Parent=gene4062;Dbxref=Genbank:WP_000203105.1;Name=WP_000203105.1;Note=Maf%3B overexpression in Bacillus subtilis inhibits septation in the dividing cell;gbkey=CDS;product=septum formation inhibitor Maf;protein_id=WP_000203105.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4119541 4120029 . - . ID=gene4063;Name=SH04_RS20365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20365;old_locus_tag=SH04_20375 NZ_CP010443.1 Protein Homology CDS 4119541 4120029 . - 0 ID=cds3963;Parent=gene4063;Dbxref=Genbank:WP_000179409.1;Name=WP_000179409.1;Note=part of cell wall structural complex MreBCD%3B transmembrane component;gbkey=CDS;product=rod shape-determining protein MreD;protein_id=WP_000179409.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4120029 4121132 . - . ID=gene4064;Name=SH04_RS20370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20370;old_locus_tag=SH04_20380 NZ_CP010443.1 Protein Homology CDS 4120029 4121132 . - 0 ID=cds3964;Parent=gene4064;Dbxref=Genbank:WP_000802511.1;Name=WP_000802511.1;Note=in some organisms this protein is a transmembrane protein while in others it is periplasmic%3B involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall;gbkey=CDS;product=cell shape-determining protein MreC;protein_id=WP_000802511.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4121198 4122241 . - . ID=gene4065;Name=SH04_RS20375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20375;old_locus_tag=SH04_20385 NZ_CP010443.1 Protein Homology CDS 4121198 4122241 . - 0 ID=cds3965;Parent=gene4065;Dbxref=Genbank:WP_000913396.1;Name=WP_000913396.1;gbkey=CDS;product=rod shape-determining protein MreB;protein_id=WP_000913396.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4122349 4122537 . + . ID=gene4066;Name=SH04_RS20380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20380;old_locus_tag=SH04_20390 NZ_CP010443.1 Protein Homology CDS 4122349 4122537 . + 0 ID=cds3966;Parent=gene4066;Dbxref=Genbank:WP_001303690.1;Name=WP_001303690.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303690.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4122546 4124486 . - . ID=gene4067;Name=SH04_RS20385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20385;old_locus_tag=SH04_20395 NZ_CP010443.1 Protein Homology CDS 4122546 4124486 . - 0 ID=cds3967;Parent=gene4067;Dbxref=Genbank:WP_001241469.1;Name=WP_001241469.1;Note=regulates the degradation of the small RNAs CsrB and CsrC%3B may function to targate RNase E to specific RNA molecules;gbkey=CDS;product=RNase E specificity factor CsrD;protein_id=WP_001241469.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4124638 4125612 . + . ID=gene4068;Name=SH04_RS20390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20390;old_locus_tag=SH04_20400 NZ_CP010443.1 Protein Homology CDS 4124638 4125612 . + 0 ID=cds3968;Parent=gene4068;Dbxref=Genbank:WP_001148481.1;Name=WP_001148481.1;gbkey=CDS;product=acrylyl-CoA reductase AcuI;protein_id=WP_001148481.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4125670 4125771 . - . ID=gene4069;Name=SH04_RS20395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20395;old_locus_tag=SH04_20405 NZ_CP010443.1 Protein Homology CDS 4125670 4125771 . - 0 ID=cds3969;Parent=gene4069;Dbxref=Genbank:WP_011110633.1;Name=WP_011110633.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011110633.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4125898 4126017 . + . ID=gene4070;Name=SH04_RS20400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20400;old_locus_tag=SH04_20410 NZ_CP010443.1 Protein Homology CDS 4125898 4126017 . + 0 ID=cds3970;Parent=gene4070;Dbxref=Genbank:WP_001061198.1;Name=WP_001061198.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001061198.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4126021 4126185 . + . ID=gene4071;Name=SH04_RS20405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20405;old_locus_tag=SH04_20415 NZ_CP010443.1 Protein Homology CDS 4126021 4126185 . + 0 ID=cds3971;Parent=gene4071;Dbxref=Genbank:WP_001326891.1;Name=WP_001326891.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001326891.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4126590 4127060 . + . ID=gene4072;Name=SH04_RS20410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20410;old_locus_tag=SH04_20420 NZ_CP010443.1 Protein Homology CDS 4126590 4127060 . + 0 ID=cds3972;Parent=gene4072;Dbxref=Genbank:WP_000354622.1;Name=WP_000354622.1;Note=composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex%2C the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism;gbkey=CDS;product=acetyl-CoA carboxylase biotin carboxyl carrier protein subunit;protein_id=WP_000354622.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4127071 4128420 . + . ID=gene4073;Name=SH04_RS20415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20415;old_locus_tag=SH04_20425 NZ_CP010443.1 Protein Homology CDS 4127071 4128420 . + 0 ID=cds3973;Parent=gene4073;Dbxref=Genbank:WP_000884639.1;Name=WP_000884639.1;Note=an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase%2C an enzyme that catalyzes the formation of malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism;gbkey=CDS;product=acetyl-CoA carboxylase biotin carboxylase subunit;protein_id=WP_000884639.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4128529 4128771 . + . ID=gene4074;Name=SH04_RS20420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20420;old_locus_tag=SH04_20430 NZ_CP010443.1 Protein Homology CDS 4128529 4128771 . + 0 ID=cds3974;Parent=gene4074;Dbxref=Genbank:WP_000381173.1;Name=WP_000381173.1;gbkey=CDS;product=DUF997 domain-containing protein;protein_id=WP_000381173.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4128761 4130212 . + . ID=gene4075;Name=panF;gbkey=Gene;gene=panF;gene_biotype=protein_coding;locus_tag=SH04_RS20425;old_locus_tag=SH04_20435 NZ_CP010443.1 Protein Homology CDS 4128761 4130212 . + 0 ID=cds3975;Parent=gene4075;Dbxref=Genbank:WP_001175728.1;Name=WP_001175728.1;Note=mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions%3B member of SSS family of sodium/solute symporters%3B the imported panthothenate is phosphorylated by panthothenate kinase;gbkey=CDS;gene=panF;product=sodium/pantothenate symporter;protein_id=WP_001175728.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4130224 4131105 . + . ID=gene4076;Name=prmA;gbkey=Gene;gene=prmA;gene_biotype=protein_coding;locus_tag=SH04_RS20430;old_locus_tag=SH04_20440 NZ_CP010443.1 Protein Homology CDS 4130224 4131105 . + 0 ID=cds3976;Parent=gene4076;Dbxref=Genbank:WP_001145827.1;Name=WP_001145827.1;Note=methylates ribosomal protein L11 at multiple amino acid positions%3B mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype;gbkey=CDS;gene=prmA;product=ribosomal protein L11 methyltransferase;protein_id=WP_001145827.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4131434 4132399 . + . ID=gene4077;Name=SH04_RS20435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20435;old_locus_tag=SH04_20445 NZ_CP010443.1 Protein Homology CDS 4131434 4132399 . + 0 ID=cds3977;Parent=gene4077;Dbxref=Genbank:WP_001219652.1;Name=WP_001219652.1;gbkey=CDS;product=tRNA-dihydrouridine synthase B;protein_id=WP_001219652.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4132425 4132721 . + . ID=gene4078;Name=fis;gbkey=Gene;gene=fis;gene_biotype=protein_coding;locus_tag=SH04_RS20440;old_locus_tag=SH04_20450 NZ_CP010443.1 Protein Homology CDS 4132425 4132721 . + 0 ID=cds3978;Parent=gene4078;Dbxref=Genbank:WP_000462905.1;Name=WP_000462905.1;Note=Stimulates excision of phage lambda%3B affects Mu development%3B acts as an activator of rRNA and iRNA transcription;gbkey=CDS;gene=fis;product=Fis family transcriptional regulator;protein_id=WP_000462905.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4132807 4133691 . + . ID=gene4079;Name=SH04_RS20445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20445;old_locus_tag=SH04_20455 NZ_CP010443.1 Protein Homology CDS 4132807 4133691 . + 0 ID=cds3979;Parent=gene4079;Dbxref=Genbank:WP_001258895.1;Name=WP_001258895.1;gbkey=CDS;product=DNA adenine methyltransferase YhdJ;protein_id=WP_001258895.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4133775 4133954 . + . ID=gene4080;Name=SH04_RS20450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20450;old_locus_tag=SH04_20460 NZ_CP010443.1 Protein Homology CDS 4133775 4133954 . + 0 ID=cds3980;Parent=gene4080;Dbxref=Genbank:WP_001295275.1;Name=WP_001295275.1;gbkey=CDS;product=transporter;protein_id=WP_001295275.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4133957 4134619 . - . ID=gene4081;Name=SH04_RS20455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20455;old_locus_tag=SH04_20465 NZ_CP010443.1 Protein Homology CDS 4133957 4134619 . - 0 ID=cds3981;Parent=gene4081;Dbxref=Genbank:WP_001129518.1;Name=WP_001129518.1;gbkey=CDS;product=acrEF/envCD operon repressor;protein_id=WP_001129518.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4135018 4136175 . + . ID=gene4082;Name=SH04_RS20460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20460;old_locus_tag=SH04_20470 NZ_CP010443.1 Protein Homology CDS 4135018 4136175 . + 0 ID=cds3982;Parent=gene4082;Dbxref=Genbank:WP_000160334.1;Name=WP_000160334.1;Note=with AcrD and TolC forms a transport system involved in resistance to a number of compounds including lipophilic antibiotics;gbkey=CDS;product=MexX family efflux pump subunit;protein_id=WP_000160334.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4136187 4139291 . + . ID=gene4083;Name=SH04_RS20465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20465;old_locus_tag=SH04_20475 NZ_CP010443.1 Protein Homology CDS 4136187 4139291 . + 0 ID=cds3983;Parent=gene4083;Dbxref=Genbank:WP_001273238.1;Name=WP_001273238.1;gbkey=CDS;product=multidrug efflux RND transporter permease subunit;protein_id=WP_001273238.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4139544 4139765 . + . ID=gene4084;Name=SH04_RS20470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20470;old_locus_tag=SH04_20480 NZ_CP010443.1 Protein Homology CDS 4139544 4139765 . + 0 ID=cds3984;Parent=gene4084;Dbxref=Genbank:WP_000825639.1;Name=WP_000825639.1;gbkey=CDS;product=membrane protein;protein_id=WP_000825639.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4139991 4140167 . + . ID=gene4085;Name=SH04_RS20475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20475;old_locus_tag=SH04_20485 NZ_CP010443.1 Protein Homology CDS 4139991 4140167 . + 0 ID=cds3985;Parent=gene4085;Dbxref=Genbank:WP_001387109.1;Name=WP_001387109.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001387109.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4140303 4141220 . + . ID=gene4086;Name=SH04_RS20480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20480;old_locus_tag=SH04_20490 NZ_CP010443.1 Protein Homology CDS 4140303 4141220 . + 0 ID=cds3986;Parent=gene4086;Dbxref=Genbank:WP_001381453.1;Name=WP_001381453.1;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_001381453.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4141288 4142469 . + . ID=gene4087;Name=SH04_RS20485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20485;old_locus_tag=SH04_20495 NZ_CP010443.1 Protein Homology CDS 4141288 4142469 . + 0 ID=cds3987;Parent=gene4087;Dbxref=Genbank:WP_000019655.1;Name=WP_000019655.1;gbkey=CDS;product=amino acid ABC transporter permease;protein_id=WP_000019655.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4142479 4143582 . + . ID=gene4088;Name=SH04_RS20490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20490;old_locus_tag=SH04_20500 NZ_CP010443.1 Protein Homology CDS 4142479 4143582 . + 0 ID=cds3988;Parent=gene4088;Dbxref=Genbank:WP_001300681.1;Name=WP_001300681.1;gbkey=CDS;product=amino acid ABC transporter permease;protein_id=WP_001300681.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4143590 4144348 . + . ID=gene4089;Name=SH04_RS20495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20495;old_locus_tag=SH04_20505 NZ_CP010443.1 Protein Homology CDS 4143590 4144348 . + 0 ID=cds3989;Parent=gene4089;Dbxref=Genbank:WP_000078349.1;Name=WP_000078349.1;gbkey=CDS;product=amino acid ABC transporter ATPase;protein_id=WP_000078349.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4144404 4144702 . + . ID=id213;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4144579 4144694 . - . ID=gene4090;Name=SH04_RS20500;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS20500;old_locus_tag=SH04_20510 NZ_CP010443.1 cmsearch rRNA 4144579 4144694 . - . ID=rna100;Parent=gene4090;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 cmsearch exon 4144579 4144694 . - . ID=id214;Parent=rna100;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 RefSeq gene 4144734 4144809 . - . ID=gene4091;Name=SH04_RS20505;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS20505;old_locus_tag=SH04_20515 NZ_CP010443.1 tRNAscan-SE tRNA 4144734 4144809 . - . ID=rna101;Parent=gene4091;anticodon=(pos:complement(4144774..4144776));gbkey=tRNA;product=tRNA-Thr NZ_CP010443.1 tRNAscan-SE exon 4144734 4144809 . - . ID=id215;Parent=rna101;anticodon=(pos:complement(4144774..4144776));gbkey=tRNA;product=tRNA-Thr NZ_CP010443.1 RefSeq repeat_region 4144816 4150148 . + . ID=id216;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4144824 4144939 . - . ID=gene4092;Name=SH04_RS20510;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS20510;old_locus_tag=SH04_20520 NZ_CP010443.1 cmsearch rRNA 4144824 4144939 . - . ID=rna102;Parent=gene4092;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 cmsearch exon 4144824 4144939 . - . ID=id217;Parent=rna102;gbkey=rRNA;product=5S ribosomal RNA NZ_CP010443.1 RefSeq gene 4145017 4147946 . - . ID=gene4093;Name=SH04_RS20515;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS20515;old_locus_tag=SH04_20525 NZ_CP010443.1 RefSeq rRNA 4145017 4147946 . - . ID=rna103;Parent=gene4093;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010443.1 RefSeq exon 4145017 4147946 . - . ID=id218;Parent=rna103;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010443.1 RefSeq gene 4148112 4148187 . - . ID=gene4094;Name=SH04_RS20520;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS20520;old_locus_tag=SH04_20530 NZ_CP010443.1 tRNAscan-SE tRNA 4148112 4148187 . - . ID=rna104;Parent=gene4094;anticodon=(pos:complement(4148152..4148154));gbkey=tRNA;product=tRNA-Ala NZ_CP010443.1 tRNAscan-SE exon 4148112 4148187 . - . ID=id219;Parent=rna104;anticodon=(pos:complement(4148152..4148154));gbkey=tRNA;product=tRNA-Ala NZ_CP010443.1 RefSeq gene 4148230 4148306 . - . ID=gene4095;Name=SH04_RS20525;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS20525;old_locus_tag=SH04_20535 NZ_CP010443.1 tRNAscan-SE tRNA 4148230 4148306 . - . ID=rna105;Parent=gene4095;anticodon=(pos:complement(4148270..4148272));gbkey=tRNA;product=tRNA-Ile NZ_CP010443.1 tRNAscan-SE exon 4148230 4148306 . - . ID=id220;Parent=rna105;anticodon=(pos:complement(4148270..4148272));gbkey=tRNA;product=tRNA-Ile NZ_CP010443.1 RefSeq gene 4148363 4149918 . - . ID=gene4096;Name=SH04_RS20530;gbkey=Gene;gene_biotype=rRNA;locus_tag=SH04_RS20530;old_locus_tag=SH04_20540 NZ_CP010443.1 RefSeq rRNA 4148363 4149918 . - . ID=rna106;Parent=gene4096;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010443.1 RefSeq exon 4148363 4149918 . - . ID=id221;Parent=rna106;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010443.1 RefSeq gene 4150390 4150944 . + . ID=gene4097;Name=SH04_RS20535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20535;old_locus_tag=SH04_20545 NZ_CP010443.1 Protein Homology CDS 4150390 4150944 . + 0 ID=cds3990;Parent=gene4097;Dbxref=Genbank:WP_001286216.1;Name=WP_001286216.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001286216.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4150920 4151177 . - . ID=gene4098;Name=SH04_RS20540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20540;old_locus_tag=SH04_20550 NZ_CP010443.1 Protein Homology CDS 4150920 4151177 . - 0 ID=cds3991;Parent=gene4098;Dbxref=Genbank:WP_001070563.1;Name=WP_001070563.1;gbkey=CDS;product=DUF1488 domain-containing protein;protein_id=WP_001070563.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4151174 4151992 . - . ID=gene4099;Name=SH04_RS20545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20545;old_locus_tag=SH04_20555 NZ_CP010443.1 Protein Homology CDS 4151174 4151992 . - 0 ID=cds3992;Parent=gene4099;Dbxref=Genbank:WP_000451243.1;Name=WP_000451243.1;gbkey=CDS;product=shikimate dehydrogenase (NADP+);protein_id=WP_000451243.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4151997 4152569 . - . ID=gene4100;Name=SH04_RS20550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20550;old_locus_tag=SH04_20560 NZ_CP010443.1 Protein Homology CDS 4151997 4152569 . - 0 ID=cds3993;Parent=gene4100;Dbxref=Genbank:WP_001301412.1;Name=WP_001301412.1;Note=involved in the biosynthesis of the threonylcarbamoyladenosine (t6A) residue at position 37 of ANN-decoding tRNAs;gbkey=CDS;product=threonylcarbamoyl-AMP synthase;protein_id=WP_001301412.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4152574 4153116 . - . ID=gene4101;Name=SH04_RS20555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20555;old_locus_tag=SH04_20565 NZ_CP010443.1 Protein Homology CDS 4152574 4153116 . - 0 ID=cds3994;Parent=gene4101;Dbxref=Genbank:WP_001129722.1;Name=WP_001129722.1;gbkey=CDS;product=ssDNA-binding protein%2C function unknown;protein_id=WP_001129722.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4153145 4153618 . - . ID=gene4102;Name=SH04_RS20560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20560;old_locus_tag=SH04_20570 NZ_CP010443.1 Protein Homology CDS 4153145 4153618 . - 0 ID=cds3995;Parent=gene4102;Dbxref=Genbank:WP_000460680.1;Name=WP_000460680.1;gbkey=CDS;product=protein Smg;protein_id=WP_000460680.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4153590 4154714 . - . ID=gene4103;Name=SH04_RS20565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20565;old_locus_tag=SH04_20575 NZ_CP010443.1 Protein Homology CDS 4153590 4154714 . - 0 ID=cds3996;Parent=gene4103;Dbxref=Genbank:WP_000228551.1;Name=WP_000228551.1;gbkey=CDS;product=protein smf;protein_id=WP_000228551.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4154844 4155353 . + . ID=gene4104;Name=SH04_RS20570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20570;old_locus_tag=SH04_20580 NZ_CP010443.1 Protein Homology CDS 4154844 4155353 . + 0 ID=cds3997;Parent=gene4104;Dbxref=Genbank:WP_000114984.1;Name=WP_000114984.1;gbkey=CDS;product=peptide deformylase;protein_id=WP_000114984.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4155368 4156315 . + . ID=gene4105;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=SH04_RS20575;old_locus_tag=SH04_20585 NZ_CP010443.1 Protein Homology CDS 4155368 4156315 . + 0 ID=cds3998;Parent=gene4105;Dbxref=Genbank:WP_000004473.1;Name=WP_000004473.1;Note=modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation%3B inactivation of this gene in Escherichia coli severely impairs growth;gbkey=CDS;gene=fmt;product=methionyl-tRNA formyltransferase;protein_id=WP_000004473.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4156361 4157650 . + . ID=gene4106;Name=SH04_RS20580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20580;old_locus_tag=SH04_20590 NZ_CP010443.1 Protein Homology CDS 4156361 4157650 . + 0 ID=cds3999;Parent=gene4106;Dbxref=Genbank:WP_000744778.1;Name=WP_000744778.1;Note=catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA%3B SAM-dependent methyltransferase;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase B;protein_id=WP_000744778.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4157672 4159048 . + . ID=gene4107;Name=trkA;gbkey=Gene;gene=trkA;gene_biotype=protein_coding;gene_synonym=sapG;locus_tag=SH04_RS20585;old_locus_tag=SH04_20595 NZ_CP010443.1 Protein Homology CDS 4157672 4159048 . + 0 ID=cds4000;Parent=gene4107;Dbxref=Genbank:WP_000691382.1;Name=WP_000691382.1;Note=involved in potassium uptake%3B found to be peripherally associated with the inner membrane in Escherichia coli%3B contains an NAD-binding domain;gbkey=CDS;gene=trkA;product=trk system potassium uptake protein trkA;protein_id=WP_000691382.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4159178 4159588 . + . ID=gene4108;Name=mscL;gbkey=Gene;gene=mscL;gene_biotype=protein_coding;locus_tag=SH04_RS20590;old_locus_tag=SH04_20600 NZ_CP010443.1 Protein Homology CDS 4159178 4159588 . + 0 ID=cds4001;Parent=gene4108;Dbxref=Genbank:WP_000022442.1;Name=WP_000022442.1;Note=forms homopentamer%3B channel that opens in response to pressure or hypoosmotic shock;gbkey=CDS;gene=mscL;product=large-conductance mechanosensitive channel;protein_id=WP_000022442.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4159585 4159803 . - . ID=gene4109;Name=SH04_RS20595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20595;old_locus_tag=SH04_20605 NZ_CP010443.1 Protein Homology CDS 4159585 4159803 . - 0 ID=cds4002;Parent=gene4109;Dbxref=Genbank:WP_000092696.1;Name=WP_000092696.1;gbkey=CDS;product=ribosome-rescue factor A;protein_id=WP_000092696.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4159859 4160284 . - . ID=gene4110;Name=zntR;gbkey=Gene;gene=zntR;gene_biotype=protein_coding;locus_tag=SH04_RS20600;old_locus_tag=SH04_20610 NZ_CP010443.1 Protein Homology CDS 4159859 4160284 . - 0 ID=cds4003;Parent=gene4110;Dbxref=Genbank:WP_000285607.1;Name=WP_000285607.1;Note=mediates expression of the zinc export protein ZntA in response to high levels of zinc%3B member of MerR family of transcriptional regulators;gbkey=CDS;gene=zntR;product=transcriptional regulator;protein_id=WP_000285607.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4160295 4160663 . - . ID=gene4111;Name=SH04_RS20605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20605;old_locus_tag=SH04_20615 NZ_CP010443.1 Protein Homology CDS 4160295 4160663 . - 0 ID=cds4004;Parent=gene4111;Dbxref=Genbank:WP_000266486.1;Name=WP_000266486.1;gbkey=CDS;product=DUF1992 domain-containing protein;protein_id=WP_000266486.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4160770 4161153 . - . ID=gene4112;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=SH04_RS20610;old_locus_tag=SH04_20620 NZ_CP010443.1 Protein Homology CDS 4160770 4161153 . - 0 ID=cds4005;Parent=gene4112;Dbxref=Genbank:WP_001216368.1;Name=WP_001216368.1;Note=is a component of the macrolide binding site in the peptidyl transferase center;gbkey=CDS;gene=rplQ;product=50S ribosomal protein L17;protein_id=WP_001216368.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4161194 4162183 . - . ID=gene4113;Name=SH04_RS20615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20615;old_locus_tag=SH04_20625 NZ_CP010443.1 Protein Homology CDS 4161194 4162183 . - 0 ID=cds4006;Parent=gene4113;Dbxref=Genbank:WP_001162094.1;Name=WP_001162094.1;Note=catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme;gbkey=CDS;product=DNA-directed RNA polymerase subunit alpha;protein_id=WP_001162094.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4162209 4162829 . - . ID=gene4114;Name=SH04_RS20620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20620;old_locus_tag=SH04_20630 NZ_CP010443.1 Protein Homology CDS 4162209 4162829 . - 0 ID=cds4007;Parent=gene4114;Dbxref=Genbank:WP_000135224.1;Name=WP_000135224.1;gbkey=CDS;product=30S ribosomal protein S4;protein_id=WP_000135224.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4162863 4163252 . - . ID=gene4115;Name=SH04_RS20625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20625;old_locus_tag=SH04_20635 NZ_CP010443.1 Protein Homology CDS 4162863 4163252 . - 0 ID=cds4008;Parent=gene4115;Dbxref=Genbank:WP_001029684.1;Name=WP_001029684.1;gbkey=CDS;product=30S ribosomal protein S11;protein_id=WP_001029684.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4163269 4163625 . - . ID=gene4116;Name=SH04_RS20630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20630;old_locus_tag=SH04_20640 NZ_CP010443.1 Protein Homology CDS 4163269 4163625 . - 0 ID=cds4009;Parent=gene4116;Dbxref=Genbank:WP_000090775.1;Name=WP_000090775.1;gbkey=CDS;product=30S ribosomal protein S13;protein_id=WP_000090775.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4163772 4163888 . - . ID=gene4117;Name=SH04_RS20635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20635;old_locus_tag=SH04_20645 NZ_CP010443.1 Protein Homology CDS 4163772 4163888 . - 0 ID=cds4010;Parent=gene4117;Dbxref=Genbank:WP_000868187.1;Name=WP_000868187.1;gbkey=CDS;product=50S ribosomal protein L36;protein_id=WP_000868187.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4163920 4165251 . - . ID=gene4118;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=SH04_RS20640;old_locus_tag=SH04_20650 NZ_CP010443.1 Protein Homology CDS 4163920 4165251 . - 0 ID=cds4011;Parent=gene4118;Dbxref=Genbank:WP_038432669.1;Name=WP_038432669.1;Note=forms heterotrimeric complex in the membrane%3B in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG%3B the SecG subunit is not essential%3B in bacteria translocation is driven via the SecA ATPase;gbkey=CDS;gene=secY;product=preprotein translocase subunit SecY;protein_id=WP_038432669.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4165259 4165693 . - . ID=gene4119;Name=SH04_RS20645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20645;old_locus_tag=SH04_20655 NZ_CP010443.1 Protein Homology CDS 4165259 4165693 . - 0 ID=cds4012;Parent=gene4119;Dbxref=Genbank:WP_001238914.1;Name=WP_001238914.1;gbkey=CDS;product=50S ribosomal protein L15;protein_id=WP_001238914.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4165697 4165876 . - . ID=gene4120;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;locus_tag=SH04_RS20650;old_locus_tag=SH04_20660 NZ_CP010443.1 Protein Homology CDS 4165697 4165876 . - 0 ID=cds4013;Parent=gene4120;Dbxref=Genbank:WP_001140433.1;Name=WP_001140433.1;Note=L30 binds domain II of the 23S rRNA and the 5S rRNA%3B similar to eukaryotic protein L7;gbkey=CDS;gene=rpmD;product=50S ribosomal protein L30;protein_id=WP_001140433.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4165880 4166383 . - . ID=gene4121;Name=SH04_RS20655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20655;old_locus_tag=SH04_20665 NZ_CP010443.1 Protein Homology CDS 4165880 4166383 . - 0 ID=cds4014;Parent=gene4121;Dbxref=Genbank:WP_000940121.1;Name=WP_000940121.1;gbkey=CDS;product=30S ribosomal protein S5;protein_id=WP_000940121.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4166398 4166751 . - . ID=gene4122;Name=SH04_RS20660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20660;old_locus_tag=SH04_20670 NZ_CP010443.1 Protein Homology CDS 4166398 4166751 . - 0 ID=cds4015;Parent=gene4122;Dbxref=Genbank:WP_000358960.1;Name=WP_000358960.1;gbkey=CDS;product=50S ribosomal protein L18;protein_id=WP_000358960.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4166761 4167294 . - . ID=gene4123;Name=SH04_RS20665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20665;old_locus_tag=SH04_20675 NZ_CP010443.1 Protein Homology CDS 4166761 4167294 . - 0 ID=cds4016;Parent=gene4123;Dbxref=Genbank:WP_000091945.1;Name=WP_000091945.1;gbkey=CDS;product=50S ribosomal protein L6;protein_id=WP_000091945.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4167307 4167699 . - . ID=gene4124;Name=SH04_RS20670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20670;old_locus_tag=SH04_20680 NZ_CP010443.1 Protein Homology CDS 4167307 4167699 . - 0 ID=cds4017;Parent=gene4124;Dbxref=Genbank:WP_000062611.1;Name=WP_000062611.1;gbkey=CDS;product=30S ribosomal protein S8;protein_id=WP_000062611.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4167733 4168038 . - . ID=gene4125;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=SH04_RS20675;old_locus_tag=SH04_20685 NZ_CP010443.1 Protein Homology CDS 4167733 4168038 . - 0 ID=cds4018;Parent=gene4125;Dbxref=Genbank:WP_001118930.1;Name=WP_001118930.1;Note=located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit%3B similar to what is observed with proteins L31 and L33%2C some proteins in this family contain CXXC motifs that are involved in zinc binding%3B if two copies are present in a genome%2C then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc%3B the proteins in this group do not appear to have the zinc-binding motif;gbkey=CDS;gene=rpsN;product=30S ribosomal protein S14;protein_id=WP_001118930.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4168053 4168592 . - . ID=gene4126;Name=SH04_RS20680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20680;old_locus_tag=SH04_20690 NZ_CP010443.1 Protein Homology CDS 4168053 4168592 . - 0 ID=cds4019;Parent=gene4126;Dbxref=Genbank:WP_001096200.1;Name=WP_001096200.1;gbkey=CDS;product=50S ribosomal protein L5;protein_id=WP_001096200.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4168607 4168921 . - . ID=gene4127;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=SH04_RS20685;old_locus_tag=SH04_20695 NZ_CP010443.1 Protein Homology CDS 4168607 4168921 . - 0 ID=cds4020;Parent=gene4127;Dbxref=Genbank:WP_000729185.1;Name=WP_000729185.1;Note=assembly initiator protein%3B binds to 5' end of 23S rRNA and nucleates assembly of the 50S%3B surrounds polypeptide exit tunnel;gbkey=CDS;gene=rplX;product=50S ribosomal protein L24;protein_id=WP_000729185.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4168932 4169303 . - . ID=gene4128;Name=SH04_RS20690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20690;old_locus_tag=SH04_20700 NZ_CP010443.1 Protein Homology CDS 4168932 4169303 . - 0 ID=cds4021;Parent=gene4128;Dbxref=Genbank:WP_000613955.1;Name=WP_000613955.1;gbkey=CDS;product=50S ribosomal protein L14;protein_id=WP_000613955.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4169468 4169722 . - . ID=gene4129;Name=SH04_RS20695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20695;old_locus_tag=SH04_20705 NZ_CP010443.1 Protein Homology CDS 4169468 4169722 . - 0 ID=cds4022;Parent=gene4129;Dbxref=Genbank:WP_000130100.1;Name=WP_000130100.1;gbkey=CDS;product=30S ribosomal protein S17;protein_id=WP_000130100.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4169722 4169913 . - . ID=gene4130;Name=SH04_RS20700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20700;old_locus_tag=SH04_20710 NZ_CP010443.1 Protein Homology CDS 4169722 4169913 . - 0 ID=cds4023;Parent=gene4130;Dbxref=Genbank:WP_000644741.1;Name=WP_000644741.1;Note=one of the stabilizing components for the large ribosomal subunit;gbkey=CDS;product=50S ribosomal protein L29;protein_id=WP_000644741.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4169913 4170323 . - . ID=gene4131;Name=SH04_RS20705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20705;old_locus_tag=SH04_20715 NZ_CP010443.1 Protein Homology CDS 4169913 4170323 . - 0 ID=cds4024;Parent=gene4131;Dbxref=Genbank:WP_000941212.1;Name=WP_000941212.1;gbkey=CDS;product=50S ribosomal protein L16;protein_id=WP_000941212.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4170336 4171037 . - . ID=gene4132;Name=SH04_RS20710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20710;old_locus_tag=SH04_20720 NZ_CP010443.1 Protein Homology CDS 4170336 4171037 . - 0 ID=cds4025;Parent=gene4132;Dbxref=Genbank:WP_000529945.1;Name=WP_000529945.1;gbkey=CDS;product=30S ribosomal protein S3;protein_id=WP_000529945.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4171055 4171387 . - . ID=gene4133;Name=SH04_RS20715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20715;old_locus_tag=SH04_20725 NZ_CP010443.1 Protein Homology CDS 4171055 4171387 . - 0 ID=cds4026;Parent=gene4133;Dbxref=Genbank:WP_000447529.1;Name=WP_000447529.1;gbkey=CDS;product=50S ribosomal protein L22;protein_id=WP_000447529.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4171402 4171680 . - . ID=gene4134;Name=SH04_RS20720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20720;old_locus_tag=SH04_20730 NZ_CP010443.1 Protein Homology CDS 4171402 4171680 . - 0 ID=cds4027;Parent=gene4134;Dbxref=Genbank:WP_001138117.1;Name=WP_001138117.1;gbkey=CDS;product=30S ribosomal protein S19;protein_id=WP_001138117.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4171697 4172518 . - . ID=gene4135;Name=SH04_RS20725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20725;old_locus_tag=SH04_20735 NZ_CP010443.1 Protein Homology CDS 4171697 4172518 . - 0 ID=cds4028;Parent=gene4135;Dbxref=Genbank:WP_000301864.1;Name=WP_000301864.1;gbkey=CDS;product=50S ribosomal protein L2;protein_id=WP_000301864.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4172536 4172838 . - . ID=gene4136;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=SH04_RS20730;old_locus_tag=SH04_20740 NZ_CP010443.1 Protein Homology CDS 4172536 4172838 . - 0 ID=cds4029;Parent=gene4136;Dbxref=Genbank:WP_000617544.1;Name=WP_000617544.1;Note=binds third domain of 23S rRNA and protein L29%3B part of exit tunnel;gbkey=CDS;gene=rplW;product=50S ribosomal protein L23;protein_id=WP_000617544.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4172835 4173440 . - . ID=gene4137;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;locus_tag=SH04_RS20735;old_locus_tag=SH04_20745 NZ_CP010443.1 Protein Homology CDS 4172835 4173440 . - 0 ID=cds4030;Parent=gene4137;Dbxref=Genbank:WP_038432672.1;Name=WP_038432672.1;Note=L4 is important during the early stages of 50S assembly%3B it initially binds near the 5' end of the 23S rRNA;gbkey=CDS;gene=rplD;product=50S ribosomal protein L4;protein_id=WP_038432672.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4173451 4174080 . - . ID=gene4138;Name=SH04_RS20740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20740;old_locus_tag=SH04_20750 NZ_CP010443.1 Protein Homology CDS 4173451 4174080 . - 0 ID=cds4031;Parent=gene4138;Dbxref=Genbank:WP_000579833.1;Name=WP_000579833.1;gbkey=CDS;product=50S ribosomal protein L3;protein_id=WP_000579833.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4174113 4174424 . - . ID=gene4139;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;gene_synonym=nusE;locus_tag=SH04_RS20745;old_locus_tag=SH04_20755 NZ_CP010443.1 Protein Homology CDS 4174113 4174424 . - 0 ID=cds4032;Parent=gene4139;Dbxref=Genbank:WP_001181004.1;Name=WP_001181004.1;Note=NusE%3B involved in assembly of the 30S subunit%3B in the ribosome%2C this protein is involved in the binding of tRNA%3B in Escherichia coli this protein was also found to be involved in transcription antitermination%3B NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination%3B binding of NusB/S10 to boxA nucleates assembly of the antitermination complex;gbkey=CDS;gene=rpsJ;product=30S ribosomal protein S10;protein_id=WP_001181004.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4174662 4175081 . - . ID=gene4140;Name=SH04_RS20750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20750;old_locus_tag=SH04_20760 NZ_CP010443.1 Protein Homology CDS 4174662 4175081 . - 0 ID=cds4033;Parent=gene4140;Dbxref=Genbank:WP_000461450.1;Name=WP_000461450.1;Note=involved in type II protein secretion;gbkey=CDS;product=hypothetical protein;protein_id=WP_000461450.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4175083 4176552 . - . ID=gene4141;Name=SH04_RS20755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20755;old_locus_tag=SH04_20765 NZ_CP010443.1 Protein Homology CDS 4175083 4176552 . - 0 ID=cds4034;Parent=gene4141;Dbxref=Genbank:WP_000107576.1;Name=WP_000107576.1;gbkey=CDS;product=general secretory pathway protein;protein_id=WP_000107576.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4176732 4177547 . + . ID=gene4142;Name=SH04_RS20760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20760;old_locus_tag=SH04_20770 NZ_CP010443.1 Protein Homology CDS 4176732 4177547 . + 0 ID=cds4035;Parent=gene4142;Dbxref=Genbank:WP_001142708.1;Name=WP_001142708.1;gbkey=CDS;product=type II secretion system protein GspC;protein_id=WP_001142708.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4177531 4179483 . + . ID=gene4143;Name=SH04_RS20765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20765;old_locus_tag=SH04_20775 NZ_CP010443.1 Protein Homology CDS 4177531 4179483 . + 0 ID=cds4036;Parent=gene4143;Dbxref=Genbank:WP_001326512.1;Name=WP_001326512.1;gbkey=CDS;product=type II secretion system protein GspD;protein_id=WP_001326512.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4179493 4180974 . + . ID=gene4144;Name=SH04_RS20770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20770;old_locus_tag=SH04_20780 NZ_CP010443.1 Protein Homology CDS 4179493 4180974 . + 0 ID=cds4037;Parent=gene4144;Dbxref=Genbank:WP_001219894.1;Name=WP_001219894.1;gbkey=CDS;product=type II secretion system protein GspE;protein_id=WP_001219894.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4180971 4182167 . + . ID=gene4145;Name=SH04_RS20775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20775;old_locus_tag=SH04_20785 NZ_CP010443.1 Protein Homology CDS 4180971 4182167 . + 0 ID=cds4038;Parent=gene4145;Dbxref=Genbank:WP_001109573.1;Name=WP_001109573.1;gbkey=CDS;product=type II secretion system protein GspF;protein_id=WP_001109573.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4182177 4182614 . + . ID=gene4146;Name=SH04_RS20780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20780;old_locus_tag=SH04_20790 NZ_CP010443.1 Protein Homology CDS 4182177 4182614 . + 0 ID=cds4039;Parent=gene4146;Dbxref=Genbank:WP_001202874.1;Name=WP_001202874.1;gbkey=CDS;product=type II secretion system protein GspG;protein_id=WP_001202874.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4182622 4183131 . + . ID=gene4147;Name=SH04_RS20785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20785;old_locus_tag=SH04_20795 NZ_CP010443.1 Protein Homology CDS 4182622 4183131 . + 0 ID=cds4040;Parent=gene4147;Dbxref=Genbank:WP_001076046.1;Name=WP_001076046.1;gbkey=CDS;product=type II secretion system protein GspH;protein_id=WP_001076046.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4183128 4183505 . + . ID=gene4148;Name=SH04_RS20790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20790;old_locus_tag=SH04_20800 NZ_CP010443.1 Protein Homology CDS 4183128 4183505 . + 0 ID=cds4041;Parent=gene4148;Dbxref=Genbank:WP_001041743.1;Name=WP_001041743.1;gbkey=CDS;product=type II secretion system protein GspI;protein_id=WP_001041743.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4183498 4184085 . + . ID=gene4149;Name=SH04_RS20795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20795;old_locus_tag=SH04_20805 NZ_CP010443.1 Protein Homology CDS 4183498 4184085 . + 0 ID=cds4042;Parent=gene4149;Dbxref=Genbank:WP_000610634.1;Name=WP_000610634.1;gbkey=CDS;product=general secretion pathway protein;protein_id=WP_000610634.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4184078 4185061 . + . ID=gene4150;Name=SH04_RS20800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20800;old_locus_tag=SH04_20810 NZ_CP010443.1 Protein Homology CDS 4184078 4185061 . + 0 ID=cds4043;Parent=gene4150;Dbxref=Genbank:WP_001058522.1;Name=WP_001058522.1;gbkey=CDS;product=general secretory pathway protein;protein_id=WP_001058522.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4185076 4186239 . + . ID=gene4151;Name=SH04_RS20805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20805;old_locus_tag=SH04_20815 NZ_CP010443.1 Protein Homology CDS 4185076 4186239 . + 0 ID=cds4044;Parent=gene4151;Dbxref=Genbank:WP_001115238.1;Name=WP_001115238.1;gbkey=CDS;product=type II secretion system protein GspL;protein_id=WP_001115238.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4186236 4186697 . + . ID=gene4152;Name=SH04_RS20810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20810;old_locus_tag=SH04_20820 NZ_CP010443.1 Protein Homology CDS 4186236 4186697 . + 0 ID=cds4045;Parent=gene4152;Dbxref=Genbank:WP_001295161.1;Name=WP_001295161.1;gbkey=CDS;product=general secretion pathway protein GspM;protein_id=WP_001295161.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4186697 4187374 . + . ID=gene4153;Name=SH04_RS20815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20815;old_locus_tag=SH04_20825 NZ_CP010443.1 Protein Homology CDS 4186697 4187374 . + 0 ID=cds4046;Parent=gene4153;Dbxref=Genbank:WP_000178154.1;Name=WP_000178154.1;gbkey=CDS;product=type 4 prepilin-like proteins leader peptide-processing enzyme;protein_id=WP_000178154.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4187403 4187879 . - . ID=gene4154;Name=SH04_RS20820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20820;old_locus_tag=SH04_20830 NZ_CP010443.1 Protein Homology CDS 4187403 4187879 . - 0 ID=cds4047;Parent=gene4154;Dbxref=Genbank:WP_000675504.1;Name=WP_000675504.1;Note=iron storage protein;gbkey=CDS;product=bacterioferritin;protein_id=WP_000675504.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4187951 4188145 . - . ID=gene4155;Name=SH04_RS20825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20825;old_locus_tag=SH04_20835 NZ_CP010443.1 Protein Homology CDS 4187951 4188145 . - 0 ID=cds4048;Parent=gene4155;Dbxref=Genbank:WP_000289085.1;Name=WP_000289085.1;gbkey=CDS;product=bacterioferritin-associated ferredoxin;protein_id=WP_000289085.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4188314 4191007 . - . ID=gene4156;Name=SH04_RS20830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20830;old_locus_tag=SH04_20840 NZ_CP010443.1 Protein Homology CDS 4188314 4191007 . - 0 ID=cds4049;Parent=gene4156;Dbxref=Genbank:WP_000773156.1;Name=WP_000773156.1;gbkey=CDS;product=bifunctional chitinase/lysozyme;protein_id=WP_000773156.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4191297 4192482 . + . ID=id222;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4191299 4192483 . - . ID=gene4157;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=SH04_RS20835;old_locus_tag=SH04_20845 NZ_CP010443.1 Protein Homology CDS 4191299 4192483 . - 0 ID=cds4050;Parent=gene4157;Dbxref=Genbank:WP_000031783.1;Name=WP_000031783.1;Note=EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu;gbkey=CDS;gene=tuf;product=translation elongation factor EF-Tu 1;protein_id=WP_000031783.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4192554 4194668 . - . ID=gene4158;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=SH04_RS20840;old_locus_tag=SH04_20850 NZ_CP010443.1 Protein Homology CDS 4192554 4194668 . - 0 ID=cds4051;Parent=gene4158;Dbxref=Genbank:WP_000124700.1;Name=WP_000124700.1;Note=EF-G%3B promotes GTP-dependent translocation of the ribosome during translation%3B many organisms have multiple copies of this gene;gbkey=CDS;gene=fusA;product=elongation factor G;protein_id=WP_000124700.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4194696 4195235 . - . ID=gene4159;Name=SH04_RS20845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20845;old_locus_tag=SH04_20855 NZ_CP010443.1 Protein Homology CDS 4194696 4195235 . - 0 ID=cds4052;Parent=gene4159;Dbxref=Genbank:WP_001138045.1;Name=WP_001138045.1;gbkey=CDS;product=30S ribosomal protein S7;protein_id=WP_001138045.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4195332 4195706 . - . ID=gene4160;Name=SH04_RS20850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20850;old_locus_tag=SH04_20860 NZ_CP010443.1 Protein Homology CDS 4195332 4195706 . - 0 ID=cds4053;Parent=gene4160;Dbxref=Genbank:WP_038432674.1;Name=WP_038432674.1;gbkey=CDS;product=30S ribosomal protein S12;protein_id=WP_038432674.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4195832 4196119 . - . ID=gene4161;Name=SH04_RS20855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20855;old_locus_tag=SH04_20865 NZ_CP010443.1 Protein Homology CDS 4195832 4196119 . - 0 ID=cds4054;Parent=gene4161;Dbxref=Genbank:WP_000903373.1;Name=WP_000903373.1;Note=in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs;gbkey=CDS;product=protein TusB;protein_id=WP_000903373.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4196127 4196486 . - . ID=gene4162;Name=SH04_RS20860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20860;old_locus_tag=SH04_20870 NZ_CP010443.1 Protein Homology CDS 4196127 4196486 . - 0 ID=cds4055;Parent=gene4162;Dbxref=Genbank:WP_000820714.1;Name=WP_000820714.1;Note=in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur transfer that results in thiouridation to U34 position in some tRNAs;gbkey=CDS;product=protein TusC;protein_id=WP_000820714.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4196486 4196872 . - . ID=gene4163;Name=SH04_RS20865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20865;old_locus_tag=SH04_20875 NZ_CP010443.1 Protein Homology CDS 4196486 4196872 . - 0 ID=cds4056;Parent=gene4163;Dbxref=Genbank:WP_001209680.1;Name=WP_001209680.1;Note=in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs;gbkey=CDS;product=sulfurtransferase TusD;protein_id=WP_001209680.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4196872 4197594 . - . ID=gene4164;Name=SH04_RS20870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20870;old_locus_tag=SH04_20880 NZ_CP010443.1 Protein Homology CDS 4196872 4197594 . - 0 ID=cds4057;Parent=gene4164;Dbxref=Genbank:WP_000091466.1;Name=WP_000091466.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000091466.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4197761 4198573 . - . ID=gene4165;Name=SH04_RS20875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20875;old_locus_tag=SH04_20885 NZ_CP010443.1 Protein Homology CDS 4197761 4198573 . - 0 ID=cds4058;Parent=gene4165;Dbxref=Genbank:WP_000838250.1;Name=WP_000838250.1;Note=rotamase;gbkey=CDS;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000838250.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4198794 4199012 . + . ID=gene4166;Name=SH04_RS20880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20880;old_locus_tag=SH04_20890 NZ_CP010443.1 Protein Homology CDS 4198794 4199012 . + 0 ID=cds4059;Parent=gene4166;Dbxref=Genbank:WP_001153615.1;Name=WP_001153615.1;Note=required for phi X174 lysis;gbkey=CDS;product=protein SlyX;protein_id=WP_001153615.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4199061 4199651 . - . ID=gene4167;Name=SH04_RS20885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20885;old_locus_tag=SH04_20895 NZ_CP010443.1 Protein Homology CDS 4199061 4199651 . - 0 ID=cds4060;Parent=gene4167;Dbxref=Genbank:WP_000861334.1;Name=WP_000861334.1;Note=rotamase;gbkey=CDS;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000861334.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4199746 4199946 . - . ID=gene4168;Name=SH04_RS20890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20890;old_locus_tag=SH04_20900 NZ_CP010443.1 Protein Homology CDS 4199746 4199946 . - 0 ID=cds4061;Parent=gene4168;Dbxref=Genbank:WP_001007730.1;Name=WP_001007730.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001007730.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4199956 4201761 . - . ID=gene4169;Name=SH04_RS20895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20895;old_locus_tag=SH04_20905 NZ_CP010443.1 Protein Homology CDS 4199956 4201761 . - 0 ID=cds4062;Parent=gene4169;Dbxref=Genbank:WP_000399147.1;Name=WP_000399147.1;Note=involved in potassium efflux;gbkey=CDS;product=glutathione-regulated potassium-efflux system protein KefB;protein_id=WP_000399147.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4201761 4202312 . - . ID=gene4170;Name=SH04_RS20900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20900;old_locus_tag=SH04_20910 NZ_CP010443.1 Protein Homology CDS 4201761 4202312 . - 0 ID=cds4063;Parent=gene4170;Dbxref=Genbank:WP_001297514.1;Name=WP_001297514.1;Note=required for KefB activity;gbkey=CDS;product=potassium transporter;protein_id=WP_001297514.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4202443 4204356 . + . ID=gene4171;Name=SH04_RS20905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20905;old_locus_tag=SH04_20915 NZ_CP010443.1 Protein Homology CDS 4202443 4204356 . + 0 ID=cds4064;Parent=gene4171;Dbxref=Genbank:WP_000634798.1;Name=WP_000634798.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_000634798.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4204356 4205378 . + . ID=gene4172;Name=SH04_RS20910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20910;old_locus_tag=SH04_20920 NZ_CP010443.1 Protein Homology CDS 4204356 4205378 . + 0 ID=cds4065;Parent=gene4172;Dbxref=Genbank:WP_000057356.1;Name=WP_000057356.1;gbkey=CDS;product=UPF0017 family hydrolase;protein_id=WP_000057356.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4205372 4205590 . + . ID=gene4173;Name=SH04_RS20915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20915;old_locus_tag=SH04_20925 NZ_CP010443.1 Protein Homology CDS 4205372 4205590 . + 0 ID=cds4066;Parent=gene4173;Dbxref=Genbank:WP_000907085.1;Name=WP_000907085.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000907085.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4205644 4206513 . + . ID=gene4174;Name=SH04_RS20920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20920;old_locus_tag=SH04_20930 NZ_CP010443.1 Protein Homology CDS 4205644 4206513 . + 0 ID=cds4067;Parent=gene4174;Dbxref=Genbank:WP_001274680.1;Name=WP_001274680.1;gbkey=CDS;product=phosphoribulokinase;protein_id=WP_001274680.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4206568 4206972 . - . ID=gene4175;Name=SH04_RS20925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20925;old_locus_tag=SH04_20935 NZ_CP010443.1 Protein Homology CDS 4206568 4206972 . - 0 ID=cds4068;Parent=gene4175;Dbxref=Genbank:WP_001148908.1;Name=WP_001148908.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001148908.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4207052 4207267 . + . ID=gene4176;Name=SH04_RS20930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20930;old_locus_tag=SH04_20940 NZ_CP010443.1 Protein Homology CDS 4207052 4207267 . + 0 ID=cds4069;Parent=gene4176;Dbxref=Genbank:WP_001303699.1;Name=WP_001303699.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303699.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4207274 4207906 . + . ID=gene4177;Name=SH04_RS20935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20935;old_locus_tag=SH04_20945 NZ_CP010443.1 Protein Homology CDS 4207274 4207906 . + 0 ID=cds4070;Parent=gene4177;Dbxref=Genbank:WP_000242755.1;Name=WP_000242755.1;Note=cAMP receptor protein%3B complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons;gbkey=CDS;product=cAMP-activated global transcriptional regulator CRP;protein_id=WP_000242755.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4207957 4210047 . + . ID=gene4178;Name=SH04_RS20940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20940;old_locus_tag=SH04_20950 NZ_CP010443.1 Protein Homology CDS 4207957 4210047 . + 0 ID=cds4071;Parent=gene4178;Dbxref=Genbank:WP_021553919.1;Name=WP_021553919.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_021553919.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4210114 4211334 . - . ID=gene4179;Name=argD;gbkey=Gene;gene=argD;gene_biotype=protein_coding;locus_tag=SH04_RS20945;old_locus_tag=SH04_20955 NZ_CP010443.1 Protein Homology CDS 4210114 4211334 . - 0 ID=cds4072;Parent=gene4179;Dbxref=Genbank:WP_000963792.1;Name=WP_000963792.1;Note=DapATase%3B bifunctional enzyme that functions in arginine and lysine biosynthetic pathways%3B catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2%2C6-diaminoheptanedioate;gbkey=CDS;gene=argD;product=acetylornithine aminotransferase;protein_id=WP_000963792.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4211420 4211983 . - . ID=gene4180;Name=SH04_RS20950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20950;old_locus_tag=SH04_20960 NZ_CP010443.1 Protein Homology CDS 4211420 4211983 . - 0 ID=cds4073;Parent=gene4180;Dbxref=Genbank:WP_000601847.1;Name=WP_000601847.1;Note=TrpG%3B with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine%3B TrpG provides the glutamine amidotransferase activity;gbkey=CDS;product=aminodeoxychorismate synthase;protein_id=WP_000601847.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4212015 4212617 . - . ID=gene4181;Name=SH04_RS20955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20955;old_locus_tag=SH04_20965 NZ_CP010443.1 Protein Homology CDS 4212015 4212617 . - 0 ID=cds4074;Parent=gene4181;Dbxref=Genbank:WP_001280641.1;Name=WP_001280641.1;gbkey=CDS;product=adenosine monophosphate-protein transferase;protein_id=WP_001280641.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4212607 4212774 . - . ID=gene4182;Name=SH04_RS20960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20960;old_locus_tag=SH04_20970 NZ_CP010443.1 Protein Homology CDS 4212607 4212774 . - 0 ID=cds4075;Parent=gene4182;Dbxref=Genbank:WP_000736862.1;Name=WP_000736862.1;gbkey=CDS;product=antitoxin;protein_id=WP_000736862.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4212879 4213451 . - . ID=gene4183;Name=SH04_RS20965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20965;old_locus_tag=SH04_20975 NZ_CP010443.1 Protein Homology CDS 4212879 4213451 . - 0 ID=cds4076;Parent=gene4183;Dbxref=Genbank:WP_000477225.1;Name=WP_000477225.1;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_000477225.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4213722 4214903 . + . ID=gene4184;Name=SH04_RS20970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20970;old_locus_tag=SH04_20980 NZ_CP010443.1 Protein Homology CDS 4213722 4214903 . + 0 ID=cds4077;Parent=gene4184;Dbxref=Genbank:WP_000185247.1;Name=WP_000185247.1;gbkey=CDS;product=protein TsgA;protein_id=WP_000185247.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4215165 4217708 . + . ID=gene4185;Name=SH04_RS20975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20975;old_locus_tag=SH04_20985 NZ_CP010443.1 Protein Homology CDS 4215165 4217708 . + 0 ID=cds4078;Parent=gene4185;Dbxref=Genbank:WP_000049208.1;Name=WP_000049208.1;gbkey=CDS;product=nitrite reductase (NADH) large subunit;protein_id=WP_000049208.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4217705 4218031 . + . ID=gene4186;Name=nirD;gbkey=Gene;gene=nirD;gene_biotype=protein_coding;locus_tag=SH04_RS20980;old_locus_tag=SH04_20990 NZ_CP010443.1 Protein Homology CDS 4217705 4218031 . + 0 ID=cds4079;Parent=gene4186;Dbxref=Genbank:WP_000084764.1;Name=WP_000084764.1;Note=involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+%3B bounds to NirB%2C the cytoplasmic subunit%2C whose expression is induced at high nitrate concentrations;gbkey=CDS;gene=nirD;product=nitrite reductase (NADH) small subunit;protein_id=WP_000084764.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4218157 4218963 . + . ID=gene4187;Name=SH04_RS20985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20985;old_locus_tag=SH04_20995 NZ_CP010443.1 Protein Homology CDS 4218157 4218963 . + 0 ID=cds4080;Parent=gene4187;Dbxref=Genbank:WP_000493556.1;Name=WP_000493556.1;Note=member of the FNT family of formate and nitrite transporters;gbkey=CDS;product=nitrite transporter NirC;protein_id=WP_000493556.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4218982 4220355 . + . ID=gene4188;Name=cysG;gbkey=Gene;gene=cysG;gene_biotype=protein_coding;locus_tag=SH04_RS20990;old_locus_tag=SH04_21000 NZ_CP010443.1 Protein Homology CDS 4218982 4220355 . + 0 ID=cds4081;Parent=gene4188;Dbxref=Genbank:WP_000349855.1;Name=WP_000349855.1;Note=multifunction enzyme consisting of uroporphyrin-III C-methyltransferase%2C precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase%3B catalyzes the methylation of uroporphyrinogen III to form precorrin-2%2C then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin;gbkey=CDS;gene=cysG;product=siroheme synthase;protein_id=WP_000349855.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4220602 4220769 . + . ID=gene4189;Name=SH04_RS20995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS20995;old_locus_tag=SH04_21005 NZ_CP010443.1 Protein Homology CDS 4220602 4220769 . + 0 ID=cds4082;Parent=gene4189;Dbxref=Genbank:WP_001031834.1;Name=WP_001031834.1;gbkey=CDS;product=lipoprotein;protein_id=WP_001031834.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4221064 4222401 . + . ID=gene4190;Name=frlA;gbkey=Gene;gene=frlA;gene_biotype=protein_coding;locus_tag=SH04_RS21000;old_locus_tag=SH04_21010 NZ_CP010443.1 Protein Homology CDS 4221064 4222401 . + 0 ID=cds4083;Parent=gene4190;Dbxref=Genbank:WP_000535505.1;Name=WP_000535505.1;Note=inner membrane protein possibly involved in fructoselysine transport%3B member of the flr operon;gbkey=CDS;gene=frlA;product=fructoselysine transporter;protein_id=WP_000535505.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4222422 4223444 . + . ID=gene4191;Name=frlB;gbkey=Gene;gene=frlB;gene_biotype=protein_coding;locus_tag=SH04_RS21005;old_locus_tag=SH04_21015 NZ_CP010443.1 Protein Homology CDS 4222422 4223444 . + 0 ID=cds4084;Parent=gene4191;Dbxref=Genbank:WP_001295163.1;Name=WP_001295163.1;Note=catalyzes the conversion of fructoselysine 6-phosphate to glucose 6-phosphate and lysine;gbkey=CDS;gene=frlB;product=fructoselysine 6-phosphate deglycase;protein_id=WP_001295163.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4223494 4224324 . + . ID=gene4192;Name=SH04_RS21010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21010;old_locus_tag=SH04_21020 NZ_CP010443.1 Protein Homology CDS 4223494 4224324 . + 0 ID=cds4085;Parent=gene4192;Dbxref=Genbank:WP_000847837.1;Name=WP_000847837.1;Note=YhfOP%3B YhfP%3B YhfO%3B FrlC%3B catalyzes the interconversion of fructoselysine and psicoselysine;gbkey=CDS;product=protein FrlC;protein_id=WP_000847837.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4224321 4225106 . + . ID=gene4193;Name=SH04_RS21015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21015;old_locus_tag=SH04_21025 NZ_CP010443.1 Protein Homology CDS 4224321 4225106 . + 0 ID=cds4086;Parent=gene4193;Dbxref=Genbank:WP_000853353.1;Name=WP_000853353.1;gbkey=CDS;product=fructoselysine kinase;protein_id=WP_000853353.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4225206 4225937 . + . ID=gene4194;Name=SH04_RS21020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21020;old_locus_tag=SH04_21030 NZ_CP010443.1 Protein Homology CDS 4225206 4225937 . + 0 ID=cds4087;Parent=gene4194;Dbxref=Genbank:WP_001276847.1;Name=WP_001276847.1;Note=may act as a transcriptional regulator of a putative fructoselysine-induced operon containing the yhfM%2C yhfN%2C yhfO%2C yhfP%2C yhfQ%2C and yhfR genes;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001276847.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4226089 4227174 . - . ID=gene4195;Name=SH04_RS21025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21025;old_locus_tag=SH04_21035 NZ_CP010443.1 Protein Homology CDS 4226089 4227174 . - 0 ID=cds4088;Parent=gene4195;Dbxref=Genbank:WP_000847144.1;Name=WP_000847144.1;gbkey=CDS;product=FNR-regulated pyridoxal phosphate-dependent aminotransferase;protein_id=WP_000847144.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4227186 4228490 . - . ID=gene4196;Name=SH04_RS21030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21030;old_locus_tag=SH04_21040 NZ_CP010443.1 Protein Homology CDS 4227186 4228490 . - 0 ID=cds4089;Parent=gene4196;Dbxref=Genbank:WP_000366857.1;Name=WP_000366857.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000366857.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4228502 4228855 . - . ID=gene4197;Name=SH04_RS21035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21035;old_locus_tag=SH04_21045 NZ_CP010443.1 Protein Homology CDS 4228502 4228855 . - 0 ID=cds4090;Parent=gene4197;Dbxref=Genbank:WP_000719728.1;Name=WP_000719728.1;gbkey=CDS;product=DUF2620 domain-containing protein;protein_id=WP_000719728.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4228866 4229744 . - . ID=gene4198;Name=SH04_RS21040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21040;old_locus_tag=SH04_21050 NZ_CP010443.1 Protein Homology CDS 4228866 4229744 . - 0 ID=cds4091;Parent=gene4198;Dbxref=Genbank:WP_000007010.1;Name=WP_000007010.1;Note=phosphotriesterase homology protein%3B PhP%3B YhfV%3B member of a family of proteins related to phosphotriesterase (PTE);gbkey=CDS;product=phosphotriesterase homology protein;protein_id=WP_000007010.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4229741 4230967 . - . ID=gene4199;Name=SH04_RS21045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21045;old_locus_tag=SH04_21055 NZ_CP010443.1 Protein Homology CDS 4229741 4230967 . - 0 ID=cds4092;Parent=gene4199;Dbxref=Genbank:WP_000090644.1;Name=WP_000090644.1;gbkey=CDS;product=phosphopentomutase-related metalloenzyme superfamily protein;protein_id=WP_000090644.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4230967 4232130 . - . ID=gene4200;Name=SH04_RS21050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21050;old_locus_tag=SH04_21060 NZ_CP010443.1 Protein Homology CDS 4230967 4232130 . - 0 ID=cds4093;Parent=gene4200;Dbxref=Genbank:WP_000497334.1;Name=WP_000497334.1;gbkey=CDS;product=pyridoxal 5''-phosphate binding protein;protein_id=WP_000497334.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4232214 4232576 . - . ID=gene4201;Name=SH04_RS21055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21055;old_locus_tag=SH04_21065 NZ_CP010443.1 Protein Homology CDS 4232214 4232576 . - 0 ID=cds4094;Parent=gene4201;Dbxref=Genbank:WP_001295165.1;Name=WP_001295165.1;gbkey=CDS;product=PRD domain protein;protein_id=WP_001295165.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4232593 4233498 . - . ID=gene4202;Name=SH04_RS21060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21060;old_locus_tag=SH04_21070 NZ_CP010443.1 Protein Homology CDS 4232593 4233498 . - 0 ID=cds4095;Parent=gene4202;Dbxref=Genbank:WP_001254790.1;Name=WP_001254790.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001254790.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4233788 4234792 . - . ID=gene4203;Name=SH04_RS21065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21065;old_locus_tag=SH04_21075 NZ_CP010443.1 Protein Homology CDS 4233788 4234792 . - 0 ID=cds4096;Parent=gene4203;Dbxref=Genbank:WP_000165552.1;Name=WP_000165552.1;gbkey=CDS;product=tryptophan--tRNA ligase;protein_id=WP_000165552.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4234785 4235543 . - . ID=gene4204;Name=SH04_RS21070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21070;old_locus_tag=SH04_21080 NZ_CP010443.1 Protein Homology CDS 4234785 4235543 . - 0 ID=cds4097;Parent=gene4204;Dbxref=Genbank:WP_001031729.1;Name=WP_001031729.1;Note=catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate;gbkey=CDS;product=phosphoglycolate phosphatase;protein_id=WP_001031729.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4235536 4236213 . - . ID=gene4205;Name=SH04_RS21075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21075;old_locus_tag=SH04_21085 NZ_CP010443.1 Protein Homology CDS 4235536 4236213 . - 0 ID=cds4098;Parent=gene4205;Dbxref=Genbank:WP_000816280.1;Name=WP_000816280.1;gbkey=CDS;product=ribulose-phosphate 3-epimerase;protein_id=WP_000816280.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4236231 4237067 . - . ID=gene4206;Name=SH04_RS21080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21080;old_locus_tag=SH04_21090 NZ_CP010443.1 Protein Homology CDS 4236231 4237067 . - 0 ID=cds4099;Parent=gene4206;Dbxref=Genbank:WP_000742143.1;Name=WP_000742143.1;gbkey=CDS;product=DNA adenine methylase;protein_id=WP_000742143.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4237174 4238460 . - . ID=gene4207;Name=SH04_RS21085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21085;old_locus_tag=SH04_21095 NZ_CP010443.1 Protein Homology CDS 4237174 4238460 . - 0 ID=cds4100;Parent=gene4207;Dbxref=Genbank:WP_000343215.1;Name=WP_000343215.1;Note=binds the septal ring;gbkey=CDS;product=protein DamX;protein_id=WP_000343215.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4238552 4239640 . - . ID=gene4208;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;locus_tag=SH04_RS21090;old_locus_tag=SH04_21100 NZ_CP010443.1 Protein Homology CDS 4238552 4239640 . - 0 ID=cds4101;Parent=gene4208;Dbxref=Genbank:WP_000439848.1;Name=WP_000439848.1;Note=catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate%3B functions in aromatic amino acid biosynthesis;gbkey=CDS;gene=aroB;product=3-dehydroquinate synthase;protein_id=WP_000439848.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4239697 4240218 . - . ID=gene4209;Name=aroK;gbkey=Gene;gene=aroK;gene_biotype=protein_coding;locus_tag=SH04_RS21095;old_locus_tag=SH04_21105 NZ_CP010443.1 Protein Homology CDS 4239697 4240218 . - 0 ID=cds4102;Parent=gene4209;Dbxref=Genbank:WP_000818618.1;Name=WP_000818618.1;Note=type I enzyme similar to type II but differentially regulated%3B major shikimate kinase in fully repressed cells%3B catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis;gbkey=CDS;gene=aroK;product=shikimate kinase;protein_id=WP_000818618.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4240619 4241779 . - . ID=gene4210;Name=hofQ;gbkey=Gene;gene=hofQ;gene_biotype=protein_coding;locus_tag=SH04_RS21100;old_locus_tag=SH04_21110 NZ_CP010443.1 Protein Homology CDS 4240619 4241779 . - 0 ID=cds4103;Parent=gene4210;Dbxref=Genbank:WP_001325235.1;Name=WP_001325235.1;Note=outer membrane porin probably involved in uptake of extracellular double-stranded DNA%3B similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa;gbkey=CDS;gene=hofQ;product=porin;protein_id=WP_001325235.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4241769 4242173 . - . ID=gene4211;Name=SH04_RS21105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21105;old_locus_tag=SH04_21115 NZ_CP010443.1 Protein Homology CDS 4241769 4242173 . - 0 ID=cds4104;Parent=gene4211;Dbxref=Genbank:WP_001264141.1;Name=WP_001264141.1;gbkey=CDS;product=DNA catabolic protein;protein_id=WP_001264141.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4242163 4242603 . - . ID=gene4212;Name=SH04_RS21110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21110;old_locus_tag=SH04_21120 NZ_CP010443.1 Protein Homology CDS 4242163 4242603 . - 0 ID=cds4105;Parent=gene4212;Dbxref=Genbank:WP_001055759.1;Name=WP_001055759.1;gbkey=CDS;product=DNA catabolic protein;protein_id=WP_001055759.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4242587 4243126 . - . ID=gene4213;Name=SH04_RS21115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21115;old_locus_tag=SH04_21125 NZ_CP010443.1 Protein Homology CDS 4242587 4243126 . - 0 ID=cds4106;Parent=gene4213;Dbxref=Genbank:WP_001069315.1;Name=WP_001069315.1;gbkey=CDS;product=DNA utilization protein HofN;protein_id=WP_001069315.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4243126 4243905 . - . ID=gene4214;Name=SH04_RS21120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21120;old_locus_tag=SH04_21130 NZ_CP010443.1 Protein Homology CDS 4243126 4243905 . - 0 ID=cds4107;Parent=gene4214;Dbxref=Genbank:WP_001295166.1;Name=WP_001295166.1;gbkey=CDS;product=DNA catabolic pilus assembly protein;protein_id=WP_001295166.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4244025 4246577 . + . ID=gene4215;Name=mrcA;gbkey=Gene;gene=mrcA;gene_biotype=protein_coding;locus_tag=SH04_RS21125;old_locus_tag=SH04_21135 NZ_CP010443.1 Protein Homology CDS 4244025 4246577 . + 0 ID=cds4108;Parent=gene4215;Dbxref=Genbank:WP_001336003.1;Name=WP_001336003.1;Note=bifunctional murein transglycosylase/murein transpeptidase%3B penicillin-binding protein 1A%3B involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation%3B penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits;gbkey=CDS;gene=mrcA;product=penicillin-binding protein 1A;protein_id=WP_001336003.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4246743 4247303 . - . ID=gene4216;Name=nudE;gbkey=Gene;gene=nudE;gene_biotype=protein_coding;locus_tag=SH04_RS21130;old_locus_tag=SH04_21140 NZ_CP010443.1 Protein Homology CDS 4246743 4247303 . - 0 ID=cds4109;Parent=gene4216;Dbxref=Genbank:WP_000045744.1;Name=WP_000045744.1;Note=ADP-sugar pyrophosphatase%3B catalyzes the formation of D-ribose 5-phosphate from ADP-ribose%3B can also act on ADP-mannose and ADP-glucose;gbkey=CDS;gene=nudE;product=ADP compounds hydrolase NudE;protein_id=WP_000045744.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4247623 4249758 . + . ID=gene4217;Name=SH04_RS21135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21135;old_locus_tag=SH04_21145 NZ_CP010443.1 Protein Homology CDS 4247623 4249758 . + 0 ID=cds4110;Parent=gene4217;Dbxref=Genbank:WP_000104533.1;Name=WP_000104533.1;gbkey=CDS;product=RcsCDB-response attenuator%2C inner membrane protein;protein_id=WP_000104533.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4249823 4250491 . + . ID=gene4218;Name=SH04_RS21140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21140;old_locus_tag=SH04_21150 NZ_CP010443.1 Protein Homology CDS 4249823 4250491 . + 0 ID=cds4111;Parent=gene4218;Dbxref=Genbank:WP_001295168.1;Name=WP_001295168.1;gbkey=CDS;product=GMP/IMP nucleotidase YrfG;protein_id=WP_001295168.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4250502 4250903 . + . ID=gene4219;Name=SH04_RS21145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21145;old_locus_tag=SH04_21155 NZ_CP010443.1 Protein Homology CDS 4250502 4250903 . + 0 ID=cds4112;Parent=gene4219;Dbxref=Genbank:WP_000660483.1;Name=WP_000660483.1;gbkey=CDS;product=heat-shock protein 15;protein_id=WP_000660483.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4250928 4251806 . + . ID=gene4220;Name=hslO;gbkey=Gene;gene=hslO;gene_biotype=protein_coding;locus_tag=SH04_RS21150;old_locus_tag=SH04_21160 NZ_CP010443.1 Protein Homology CDS 4250928 4251806 . + 0 ID=cds4113;Parent=gene4220;Dbxref=Genbank:WP_001135574.1;Name=WP_001135574.1;Note=becomes active under oxidative stress%3B four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive%3B oxidative stress results in oxidized cysteines%2C release of zinc%2C and binding of Hsp33 to aggregation-prone proteins%3B forms dimers and higher order oligomers;gbkey=CDS;gene=hslO;product=heat-shock protein Hsp33;protein_id=WP_001135574.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4251869 4253593 . - . ID=gene4221;Name=SH04_RS21155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21155;old_locus_tag=SH04_21165 NZ_CP010443.1 Protein Homology CDS 4251869 4253593 . - 0 ID=cds4114;Parent=gene4221;Dbxref=Genbank:WP_000370879.1;Name=WP_000370879.1;gbkey=CDS;product=DUF4153 domain-containing protein;protein_id=WP_000370879.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4253669 4253800 . - . ID=gene4222;Name=SH04_RS21160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21160;old_locus_tag=SH04_21170 NZ_CP010443.1 Protein Homology CDS 4253669 4253800 . - 0 ID=cds4115;Parent=gene4222;Dbxref=Genbank:WP_001303701.1;Name=WP_001303701.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303701.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4253972 4255594 . + . ID=gene4223;Name=SH04_RS21165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21165;old_locus_tag=SH04_21175 NZ_CP010443.1 Protein Homology CDS 4253972 4255594 . + 0 ID=cds4116;Parent=gene4223;Dbxref=Genbank:WP_001265681.1;Name=WP_001265681.1;Note=PEP carboxykinase%3B PEP carboxylase%3B PEPCK%3B catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP;gbkey=CDS;product=phosphoenolpyruvate carboxykinase [ATP];protein_id=WP_001265681.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4255670 4257022 . - . ID=gene4224;Name=envZ;gbkey=Gene;gene=envZ;gene_biotype=protein_coding;gene_synonym=ompB;locus_tag=SH04_RS21170;old_locus_tag=SH04_21180 NZ_CP010443.1 Protein Homology CDS 4255670 4257022 . - 0 ID=cds4117;Parent=gene4224;Dbxref=Genbank:WP_001253696.1;Name=WP_001253696.1;Note=membrane-localized osmosensor%3B histidine kinase%3B in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR;gbkey=CDS;gene=envZ;product=two-component system sensor histidine kinase;protein_id=WP_001253696.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4257019 4257738 . - . ID=gene4225;Name=ompR;gbkey=Gene;gene=ompR;gene_biotype=protein_coding;locus_tag=SH04_RS21175;old_locus_tag=SH04_21185 NZ_CP010443.1 Protein Homology CDS 4257019 4257738 . - 0 ID=cds4118;Parent=gene4225;Dbxref=Genbank:WP_001157751.1;Name=WP_001157751.1;Note=part of two-component system EnvZ/OmpR%3B regulates transcription of outer membrane porin genes ompC/F%3B under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR%3B the result is increased expression of ompC and repression of ompF%3B also functions in regulation of other genes%3B forms dimers upon phosphorylation;gbkey=CDS;gene=ompR;product=two-component system response regulator;protein_id=WP_001157751.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4257966 4258442 . + . ID=gene4226;Name=greB;gbkey=Gene;gene=greB;gene_biotype=protein_coding;locus_tag=SH04_RS21180;old_locus_tag=SH04_21190 NZ_CP010443.1 Protein Homology CDS 4257966 4258442 . + 0 ID=cds4119;Parent=gene4226;Dbxref=Genbank:WP_000856737.1;Name=WP_000856737.1;Note=necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites%3B arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through%2C resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus;gbkey=CDS;gene=greB;product=transcription elongation factor GreB;protein_id=WP_000856737.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4258539 4260860 . + . ID=gene4227;Name=SH04_RS21185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21185;old_locus_tag=SH04_21195 NZ_CP010443.1 Protein Homology CDS 4258539 4260860 . + 0 ID=cds4120;Parent=gene4227;Dbxref=Genbank:WP_000980727.1;Name=WP_000980727.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000980727.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4261317 4261544 . + . ID=gene4228;Name=feoA;gbkey=Gene;gene=feoA;gene_biotype=protein_coding;locus_tag=SH04_RS21190;old_locus_tag=SH04_21200 NZ_CP010443.1 Protein Homology CDS 4261317 4261544 . + 0 ID=cds4121;Parent=gene4228;Dbxref=Genbank:WP_001200455.1;Name=WP_001200455.1;gbkey=CDS;gene=feoA;product=ferrous iron transporter A;protein_id=WP_001200455.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4261561 4263882 . + . ID=gene4229;Name=feoB;gbkey=Gene;gene=feoB;gene_biotype=protein_coding;locus_tag=SH04_RS21195;old_locus_tag=SH04_21205 NZ_CP010443.1 Protein Homology CDS 4261561 4263882 . + 0 ID=cds4122;Parent=gene4229;Dbxref=Genbank:WP_000737039.1;Name=WP_000737039.1;Note=cytoplasmic membrane ferrous uptake system permease%3B mutations disrupt the ability of Escherichia coli to take up ferrous iron%3B GTP-binding protein which requires GTP for efficient iron(II) uptake;gbkey=CDS;gene=feoB;product=ferrous iron transporter B;protein_id=WP_000737039.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4263882 4264118 . + . ID=gene4230;Name=SH04_RS21200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21200;old_locus_tag=SH04_21210 NZ_CP010443.1 Protein Homology CDS 4263882 4264118 . + 0 ID=cds4123;Parent=gene4230;Dbxref=Genbank:WP_000157586.1;Name=WP_000157586.1;Note=regulatory protein that controls transcription of feoABC genes;gbkey=CDS;product=ferrous iron transporter C;protein_id=WP_000157586.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4264321 4265199 . + . ID=gene4231;Name=SH04_RS21205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21205;old_locus_tag=SH04_21215 NZ_CP010443.1 Protein Homology CDS 4264321 4265199 . + 0 ID=cds4124;Parent=gene4231;Dbxref=Genbank:WP_000039062.1;Name=WP_000039062.1;gbkey=CDS;product=transposase;protein_id=WP_000039062.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4265228 4265998 . - . ID=gene4232;Name=SH04_RS21210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21210;old_locus_tag=SH04_21220 NZ_CP010443.1 Protein Homology CDS 4265228 4265998 . - 0 ID=cds4125;Parent=gene4232;Dbxref=Genbank:WP_001060070.1;Name=WP_001060070.1;Note=Shows carboxylesterase activity with a preference for short chain fatty acid esters%3B involved in pimeloyl-CoA synthesis;gbkey=CDS;product=pimeloyl-[acyl-carrier protein] methyl ester esterase;protein_id=WP_001060070.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4266036 4266719 . + . ID=gene4233;Name=SH04_RS21215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21215;old_locus_tag=SH04_21225 NZ_CP010443.1 Protein Homology CDS 4266036 4266719 . + 0 ID=cds4126;Parent=gene4233;Dbxref=Genbank:WP_001333371.1;Name=WP_001333371.1;Note=required for utilization of DNA as the sole source of carbon and energy;gbkey=CDS;product=protein GntX;protein_id=WP_001333371.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4266778 4267353 . + . ID=gene4234;Name=SH04_RS21220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21220;old_locus_tag=SH04_21230 NZ_CP010443.1 Protein Homology CDS 4266778 4267353 . + 0 ID=cds4127;Parent=gene4234;Dbxref=Genbank:WP_000619389.1;Name=WP_000619389.1;Note=cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source;gbkey=CDS;product=fe/S biogenesis protein nfuA;protein_id=WP_000619389.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4267713 4269029 . + . ID=gene4235;Name=SH04_RS21225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21225;old_locus_tag=SH04_21235 NZ_CP010443.1 Protein Homology CDS 4267713 4269029 . + 0 ID=cds4128;Parent=gene4235;Dbxref=Genbank:WP_001131758.1;Name=WP_001131758.1;gbkey=CDS;product=gluconate transporter;protein_id=WP_001131758.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4269140 4271224 . - . ID=gene4236;Name=malQ;gbkey=Gene;gene=malQ;gene_biotype=protein_coding;locus_tag=SH04_RS21230;old_locus_tag=SH04_21240 NZ_CP010443.1 Protein Homology CDS 4269140 4271224 . - 0 ID=cds4129;Parent=gene4236;Dbxref=Genbank:WP_000444342.1;Name=WP_000444342.1;Note=amylomaltase%3B acts to release glucose from maltodextrins;gbkey=CDS;gene=malQ;product=4-alpha-glucanotransferase;protein_id=WP_000444342.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4271234 4273627 . - . ID=gene4237;Name=SH04_RS21235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21235;old_locus_tag=SH04_21245 NZ_CP010443.1 Protein Homology CDS 4271234 4273627 . - 0 ID=cds4130;Parent=gene4237;Dbxref=Genbank:WP_000081909.1;Name=WP_000081909.1;gbkey=CDS;product=maltodextrin phosphorylase;protein_id=WP_000081909.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4274239 4276944 . + . ID=gene4238;Name=SH04_RS21240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21240;old_locus_tag=SH04_21250 NZ_CP010443.1 Protein Homology CDS 4274239 4276944 . + 0 ID=cds4131;Parent=gene4238;Dbxref=Genbank:WP_038432676.1;Name=WP_038432676.1;Note=Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides;gbkey=CDS;product=transcriptional regulator;protein_id=WP_038432676.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4276987 4278003 . - . ID=gene4239;Name=SH04_RS21245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21245;old_locus_tag=SH04_21255 NZ_CP010443.1 Protein Homology CDS 4276987 4278003 . - 0 ID=cds4132;Parent=gene4239;Dbxref=Genbank:WP_001335950.1;Name=WP_001335950.1;Note=catalyzes the conversion of terminal3'-phosphate of RNA to the 2'%2C3'-cyclicphosphodiester;gbkey=CDS;product=RNA 3'-terminal phosphate cyclase;protein_id=WP_001335950.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4278007 4279233 . - . ID=gene4240;Name=SH04_RS21250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21250;old_locus_tag=SH04_21260 NZ_CP010443.1 Protein Homology CDS 4278007 4279233 . - 0 ID=cds4133;Parent=gene4240;Dbxref=Genbank:WP_001105504.1;Name=WP_001105504.1;gbkey=CDS;product=RNA-splicing ligase RtcB;protein_id=WP_001105504.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4279422 4281020 . + . ID=gene4241;Name=SH04_RS21255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21255;old_locus_tag=SH04_21265 NZ_CP010443.1 Protein Homology CDS 4279422 4281020 . + 0 ID=cds4134;Parent=gene4241;Dbxref=Genbank:WP_001232948.1;Name=WP_001232948.1;Note=sigma 54-dependent%3B regulates genes involved in forming a 2'%2C3'-cyclic phosphodiester on RNA;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001232948.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4281002 4281760 . - . ID=gene4242;Name=SH04_RS21260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21260;old_locus_tag=SH04_21270 NZ_CP010443.1 Protein Homology CDS 4281002 4281760 . - 0 ID=cds4135;Parent=gene4242;Dbxref=Genbank:WP_000815099.1;Name=WP_000815099.1;Note=represses the glpD%2C glpFK%2C glpTQ%2C and glpACB operons involved in glycerol-3-phosphate metabolism;gbkey=CDS;product=glycerol-3-phosphate regulon repressor;protein_id=WP_000815099.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4281777 4282607 . - . ID=gene4243;Name=SH04_RS21265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21265;old_locus_tag=SH04_21275 NZ_CP010443.1 Protein Homology CDS 4281777 4282607 . - 0 ID=cds4136;Parent=gene4243;Dbxref=Genbank:WP_000928723.1;Name=WP_000928723.1;Note=protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity;gbkey=CDS;product=rhomboid protease GlpG;protein_id=WP_000928723.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4282652 4282978 . - . ID=gene4244;Name=glpE;gbkey=Gene;gene=glpE;gene_biotype=protein_coding;locus_tag=SH04_RS21270;old_locus_tag=SH04_21280 NZ_CP010443.1 Protein Homology CDS 4282652 4282978 . - 0 ID=cds4137;Parent=gene4244;Dbxref=Genbank:WP_000371928.1;Name=WP_000371928.1;Note=belongs to rhodanese family%3B thiosulfate thiotransferase%3B in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency%3B contains an active site cysteine;gbkey=CDS;gene=glpE;product=thiosulfate sulfurtransferase GlpE;protein_id=WP_000371928.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4283168 4284673 . + . ID=gene4245;Name=glpD;gbkey=Gene;gene=glpD;gene_biotype=protein_coding;locus_tag=SH04_RS21275;old_locus_tag=SH04_21285 NZ_CP010443.1 Protein Homology CDS 4283168 4284673 . + 0 ID=cds4138;Parent=gene4245;Dbxref=Genbank:WP_000448136.1;Name=WP_000448136.1;Note=in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions%3B anaerobic expression is repressed by the arcAB system%3B converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8%3B associates with the cytoplasmic membrane;gbkey=CDS;gene=glpD;product=aerobic glycerol-3-phosphate dehydrogenase;protein_id=WP_000448136.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4284879 4285070 . - . ID=gene4246;Name=SH04_RS21280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21280;old_locus_tag=SH04_21290 NZ_CP010443.1 Protein Homology CDS 4284879 4285070 . - 0 ID=cds4139;Parent=gene4246;Dbxref=Genbank:WP_001335952.1;Name=WP_001335952.1;gbkey=CDS;product=membrane protein;protein_id=WP_001335952.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4285289 4287736 . - . ID=gene4247;Name=SH04_RS21285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21285;old_locus_tag=SH04_21295 NZ_CP010443.1 Protein Homology CDS 4285289 4287736 . - 0 ID=cds4140;Parent=gene4247;Dbxref=Genbank:WP_000993449.1;Name=WP_000993449.1;gbkey=CDS;product=glycogen phosphorylase;protein_id=WP_000993449.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4287755 4289188 . - . ID=gene4248;Name=glgA;gbkey=Gene;gene=glgA;gene_biotype=protein_coding;locus_tag=SH04_RS21290;old_locus_tag=SH04_21300 NZ_CP010443.1 Protein Homology CDS 4287755 4289188 . - 0 ID=cds4141;Parent=gene4248;Dbxref=Genbank:WP_001197646.1;Name=WP_001197646.1;Note=catalyzes the formation of alpha-1%2C4-glucan chains from ADP-glucose;gbkey=CDS;gene=glgA;product=glycogen synthase;protein_id=WP_001197646.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4289188 4290483 . - . ID=gene4249;Name=glgC;gbkey=Gene;gene=glgC;gene_biotype=protein_coding;locus_tag=SH04_RS21295;old_locus_tag=SH04_21305 NZ_CP010443.1 Protein Homology CDS 4289188 4290483 . - 0 ID=cds4142;Parent=gene4249;Dbxref=Genbank:WP_000253975.1;Name=WP_000253975.1;Note=catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate;gbkey=CDS;gene=glgC;product=glucose-1-phosphate adenylyltransferase;protein_id=WP_000253975.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4290501 4292474 . - . ID=gene4250;Name=SH04_RS21300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21300;old_locus_tag=SH04_21310 NZ_CP010443.1 Protein Homology CDS 4290501 4292474 . - 0 ID=cds4143;Parent=gene4250;Dbxref=Genbank:WP_000192523.1;Name=WP_000192523.1;Note=catalyzes the hydrolysis of the alpha-1%2C6-glucosidic linkages in partially depolymerized glycogen;gbkey=CDS;product=glycogen debranching protein;protein_id=WP_000192523.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4292471 4294657 . - . ID=gene4251;Name=SH04_RS21305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21305;old_locus_tag=SH04_21315 NZ_CP010443.1 Protein Homology CDS 4292471 4294657 . - 0 ID=cds4144;Parent=gene4251;Dbxref=Genbank:WP_001283723.1;Name=WP_001283723.1;gbkey=CDS;product=1%2C4-alpha-glucan-branching protein;protein_id=WP_001283723.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4294930 4296033 . - . ID=gene4252;Name=SH04_RS21310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21310;old_locus_tag=SH04_21320 NZ_CP010443.1 Protein Homology CDS 4294930 4296033 . - 0 ID=cds4145;Parent=gene4252;Dbxref=Genbank:WP_000799956.1;Name=WP_000799956.1;Note=catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde;gbkey=CDS;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_000799956.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4296226 4296819 . + . ID=gene4253;Name=SH04_RS21315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21315;old_locus_tag=SH04_21325 NZ_CP010443.1 Protein Homology CDS 4296226 4296819 . + 0 ID=cds4146;Parent=gene4253;Dbxref=Genbank:WP_001002544.1;Name=WP_001002544.1;gbkey=CDS;product=membrane protein;protein_id=WP_001002544.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4296876 4298216 . - . ID=gene4254;Name=SH04_RS21320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21320;old_locus_tag=SH04_21330 NZ_CP010443.1 Protein Homology CDS 4296876 4298216 . - 0 ID=cds4147;Parent=gene4254;Dbxref=Genbank:WP_000210111.1;Name=WP_000210111.1;gbkey=CDS;product=low-affinity gluconate transporter;protein_id=WP_000210111.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4298220 4298747 . - . ID=gene4255;Name=gntK;gbkey=Gene;gene=gntK;gene_biotype=protein_coding;locus_tag=SH04_RS21325;old_locus_tag=SH04_21335 NZ_CP010443.1 Protein Homology CDS 4298220 4298747 . - 0 ID=cds4148;Parent=gene4255;Dbxref=Genbank:WP_000108330.1;Name=WP_000108330.1;Note=thermoresistant%3B catalyzes the formation of 6-phospho-D-gluconate from gluconate;gbkey=CDS;gene=gntK;product=thermoresistant gluconokinase;protein_id=WP_000108330.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4298886 4299881 . - . ID=gene4256;Name=SH04_RS21330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21330;old_locus_tag=SH04_21340 NZ_CP010443.1 Protein Homology CDS 4298886 4299881 . - 0 ID=cds4149;Parent=gene4256;Dbxref=Genbank:WP_000730252.1;Name=WP_000730252.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_000730252.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4300105 4300800 . - . ID=gene4257;Name=SH04_RS21335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21335;old_locus_tag=SH04_21345 NZ_CP010443.1 Protein Homology CDS 4300105 4300800 . - 0 ID=cds4150;Parent=gene4257;Dbxref=Genbank:WP_000639811.1;Name=WP_000639811.1;gbkey=CDS;product=quercetin 2%2C3-dioxygenase;protein_id=WP_000639811.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4300923 4301960 . - . ID=gene4258;Name=SH04_RS21340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21340;old_locus_tag=SH04_21350 NZ_CP010443.1 Protein Homology CDS 4300923 4301960 . - 0 ID=cds4151;Parent=gene4258;Dbxref=Genbank:WP_000236293.1;Name=WP_000236293.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000236293.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4302293 4302781 . + . ID=gene4259;Name=SH04_RS21345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21345;old_locus_tag=SH04_21355 NZ_CP010443.1 Protein Homology CDS 4302293 4302781 . + 0 ID=cds4152;Parent=gene4259;Dbxref=Genbank:WP_001295206.1;Name=WP_001295206.1;Note=YhhY%3B regulated by the fur regulator%3B unknown function;gbkey=CDS;product=aminoacyl nucleotide detoxifying acetyltransferase;protein_id=WP_001295206.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4303018 4304196 . + . ID=gene4260;Name=SH04_RS21350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21350;old_locus_tag=SH04_21360 NZ_CP010443.1 Protein Homology CDS 4303018 4304196 . + 0 ID=cds4153;Parent=gene4260;Dbxref=Genbank:WP_000065894.1;Name=WP_000065894.1;gbkey=CDS;product=colicin;protein_id=WP_000065894.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4304193 4304609 . + . ID=gene4261;Name=SH04_RS21355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21355;old_locus_tag=SH04_21365 NZ_CP010443.1 Protein Homology CDS 4304193 4304609 . + 0 ID=cds4154;Parent=gene4261;Dbxref=Genbank:WP_000988497.1;Name=WP_000988497.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000988497.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4304582 4305354 . + . ID=id223;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4304832 4305335 . + . ID=gene4262;Name=SH04_RS21360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21360;old_locus_tag=SH04_21370 NZ_CP010443.1 Protein Homology CDS 4304832 4305335 . + 0 ID=cds4155;Parent=gene4262;Dbxref=Genbank:WP_001119362.1;Name=WP_001119362.1;gbkey=CDS;product=transposase;protein_id=WP_001119362.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4305914 4306198 . + . ID=gene4263;Name=SH04_RS21365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21365;old_locus_tag=SH04_21375 NZ_CP010443.1 Protein Homology CDS 4305914 4306198 . + 0 ID=cds4156;Parent=gene4263;Dbxref=Genbank:WP_000634159.1;Name=WP_000634159.1;gbkey=CDS;product=heat-shock protein;protein_id=WP_000634159.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4306236 4307978 . - . ID=gene4264;Name=ggt;gbkey=Gene;gene=ggt;gene_biotype=protein_coding;locus_tag=SH04_RS21370;old_locus_tag=SH04_21380 NZ_CP010443.1 Protein Homology CDS 4306236 4307978 . - 0 ID=cds4157;Parent=gene4264;Dbxref=Genbank:WP_000595082.1;Name=WP_000595082.1;Note=periplasmic enzyme%3B post-translationally processed into two subunits which are required for wild-type enzyme activity%3B cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides;gbkey=CDS;gene=ggt;product=gamma-glutamyltranspeptidase;protein_id=WP_000595082.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4308098 4308538 . + . ID=gene4265;Name=SH04_RS21375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21375;old_locus_tag=SH04_21385 NZ_CP010443.1 Protein Homology CDS 4308098 4308538 . + 0 ID=cds4158;Parent=gene4265;Dbxref=Genbank:WP_000825996.1;Name=WP_000825996.1;gbkey=CDS;product=DUF2756 domain-containing protein;protein_id=WP_000825996.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4308525 4309268 . - . ID=gene4266;Name=ugpQ;gbkey=Gene;gene=ugpQ;gene_biotype=protein_coding;locus_tag=SH04_RS21380;old_locus_tag=SH04_21390 NZ_CP010443.1 Protein Homology CDS 4308525 4309268 . - 0 ID=cds4159;Parent=gene4266;Dbxref=Genbank:WP_000073623.1;Name=WP_000073623.1;Note=hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol%3B induced when cells are starved for inorganic phosphate;gbkey=CDS;gene=ugpQ;product=glycerophosphoryl diester phosphodiesterase;protein_id=WP_000073623.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4309265 4310335 . - . ID=gene4267;Name=ugpC;gbkey=Gene;gene=ugpC;gene_biotype=protein_coding;locus_tag=SH04_RS21385;old_locus_tag=SH04_21395 NZ_CP010443.1 Protein Homology CDS 4309265 4310335 . - 0 ID=cds4160;Parent=gene4267;Dbxref=Genbank:WP_000907792.1;Name=WP_000907792.1;Note=part of the UgpABCE glycerol-3-phosphate uptake system;gbkey=CDS;gene=ugpC;product=sn-glycerol-3-phosphate import ATP-binding protein UgpC;protein_id=WP_000907792.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4310337 4311182 . - . ID=gene4268;Name=SH04_RS21390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21390;old_locus_tag=SH04_21400 NZ_CP010443.1 Protein Homology CDS 4310337 4311182 . - 0 ID=cds4161;Parent=gene4268;Dbxref=Genbank:WP_000572177.1;Name=WP_000572177.1;Note=with UgpABC is involved in uptake of glycerol-3-phosphate;gbkey=CDS;product=sn-glycerol 3-phosphate ABC transporter permease;protein_id=WP_000572177.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4311179 4312066 . - . ID=gene4269;Name=SH04_RS21395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21395;old_locus_tag=SH04_21405 NZ_CP010443.1 Protein Homology CDS 4311179 4312066 . - 0 ID=cds4162;Parent=gene4269;Dbxref=Genbank:WP_000099289.1;Name=WP_000099289.1;Note=with UgpEC is involved in the uptake of glycerol-3-phosphate;gbkey=CDS;product=sn-glycerol 3-phosphate ABC transporter permease;protein_id=WP_000099289.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4312164 4313480 . - . ID=gene4270;Name=SH04_RS21400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21400;old_locus_tag=SH04_21410 NZ_CP010443.1 Protein Homology CDS 4312164 4313480 . - 0 ID=cds4163;Parent=gene4270;Dbxref=Genbank:WP_000803190.1;Name=WP_000803190.1;Note=with UgpACE is involved in the uptake of glycerol-3-phosphate;gbkey=CDS;product=sn-glycerol-3-phosphate-binding periplasmic protein UgpB;protein_id=WP_000803190.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4313715 4313843 . - . ID=gene4271;Name=SH04_RS21405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21405;old_locus_tag=SH04_21415 NZ_CP010443.1 Protein Homology CDS 4313715 4313843 . - 0 ID=cds4164;Parent=gene4271;Dbxref=Genbank:WP_001442981.1;Name=WP_001442981.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001442981.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4313879 4314592 . - . ID=gene4272;Name=livF;gbkey=Gene;gene=livF;gene_biotype=protein_coding;locus_tag=SH04_RS21410;old_locus_tag=SH04_21420 NZ_CP010443.1 Protein Homology CDS 4313879 4314592 . - 0 ID=cds4165;Parent=gene4272;Dbxref=Genbank:WP_000416891.1;Name=WP_000416891.1;Note=with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine;gbkey=CDS;gene=livF;product=branched-chain amino acid ABC transporter ATP-binding protein;protein_id=WP_000416891.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4314594 4315361 . - . ID=gene4273;Name=livG;gbkey=Gene;gene=livG;gene_biotype=protein_coding;locus_tag=SH04_RS21415;old_locus_tag=SH04_21425 NZ_CP010443.1 Protein Homology CDS 4314594 4315361 . - 0 ID=cds4166;Parent=gene4273;Dbxref=Genbank:WP_000082101.1;Name=WP_000082101.1;Note=Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine;gbkey=CDS;gene=livG;product=branched-chain amino acid ABC transporter ATP-binding protein;protein_id=WP_000082101.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4315358 4316635 . - . ID=gene4274;Name=livM;gbkey=Gene;gene=livM;gene_biotype=protein_coding;locus_tag=SH04_RS21420;old_locus_tag=SH04_21430 NZ_CP010443.1 Protein Homology CDS 4315358 4316635 . - 0 ID=cds4167;Parent=gene4274;Dbxref=Genbank:WP_000803813.1;Name=WP_000803813.1;Note=Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine;gbkey=CDS;gene=livM;product=branched-chain amino acid ABC transporter permease;protein_id=WP_000803813.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4316632 4317558 . - . ID=gene4275;Name=SH04_RS21425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21425;old_locus_tag=SH04_21435 NZ_CP010443.1 Protein Homology CDS 4316632 4317558 . - 0 ID=cds4168;Parent=gene4275;Dbxref=Genbank:WP_001295111.1;Name=WP_001295111.1;Note=LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_001295111.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4317606 4318715 . - . ID=gene4276;Name=SH04_RS21430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21430;old_locus_tag=SH04_21440 NZ_CP010443.1 Protein Homology CDS 4317606 4318715 . - 0 ID=cds4169;Parent=gene4276;Dbxref=Genbank:WP_000827696.1;Name=WP_000827696.1;Note=with LivFGHM is involved in the high affinity leucine transport;gbkey=CDS;product=leucine-specific-binding protein;protein_id=WP_000827696.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4319139 4319522 . + . ID=gene4277;Name=SH04_RS21435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21435;old_locus_tag=SH04_21445 NZ_CP010443.1 Protein Homology CDS 4319139 4319522 . + 0 ID=cds4170;Parent=gene4277;Dbxref=Genbank:WP_000778768.1;Name=WP_000778768.1;gbkey=CDS;product=pantothenate synthesis PanD autocleavage accelerator;protein_id=WP_000778768.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4319532 4319654 . + . ID=gene4278;Name=SH04_RS21440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21440;old_locus_tag=SH04_21450 NZ_CP010443.1 Protein Homology CDS 4319532 4319654 . + 0 ID=cds4171;Parent=gene4278;Dbxref=Genbank:WP_001311188.1;Name=WP_001311188.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001311188.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4319710 4320828 . - . ID=gene4279;Name=SH04_RS21445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21445;old_locus_tag=SH04_21455 NZ_CP010443.1 Protein Homology CDS 4319710 4320828 . - 0 ID=cds4172;Parent=gene4279;Dbxref=Genbank:WP_001326754.1;Name=WP_001326754.1;Note=with LivFGHM is involved in the high affinity leucine transport;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_001326754.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4321084 4321938 . - . ID=gene4280;Name=SH04_RS21450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21450;old_locus_tag=SH04_21460 NZ_CP010443.1 Protein Homology CDS 4321084 4321938 . - 0 ID=cds4173;Parent=gene4280;Dbxref=Genbank:WP_000130217.1;Name=WP_000130217.1;Note=binds with the catalytic core of RNA polymerase to produce the holoenzyme%3B this sigma factor is responsible for the expression of heat shock promoters;gbkey=CDS;product=RNA polymerase sigma factor RpoH;protein_id=WP_000130217.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4322183 4323241 . - . ID=gene4281;Name=ftsX;gbkey=Gene;gene=ftsX;gene_biotype=protein_coding;locus_tag=SH04_RS21455;old_locus_tag=SH04_21465 NZ_CP010443.1 Protein Homology CDS 4322183 4323241 . - 0 ID=cds4174;Parent=gene4281;Dbxref=Genbank:WP_001042003.1;Name=WP_001042003.1;Note=ABC transporter%2C membrane protein;gbkey=CDS;gene=ftsX;product=cell division protein FtsX;protein_id=WP_001042003.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4323234 4323902 . - . ID=gene4282;Name=SH04_RS21460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21460;old_locus_tag=SH04_21470 NZ_CP010443.1 Protein Homology CDS 4323234 4323902 . - 0 ID=cds4175;Parent=gene4282;Dbxref=Genbank:WP_000617723.1;Name=WP_000617723.1;Note=ATP-binding protein of an ATP-binding cassette transporter%3B when bound to FtsX%2C FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions;gbkey=CDS;product=cell division ATP-binding protein FtsE;protein_id=WP_000617723.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4323905 4325398 . - . ID=gene4283;Name=SH04_RS21465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21465;old_locus_tag=SH04_21475 NZ_CP010443.1 Protein Homology CDS 4323905 4325398 . - 0 ID=cds4176;Parent=gene4283;Dbxref=Genbank:WP_001040654.1;Name=WP_001040654.1;Note=cell division protein%3B signal recognition protein receptor%3B functions in the targeting and insertion of membrane proteins;gbkey=CDS;product=signal recognition particle receptor FtsY;protein_id=WP_001040654.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4325548 4326144 . + . ID=gene4284;Name=rsmD;gbkey=Gene;gene=rsmD;gene_biotype=protein_coding;locus_tag=SH04_RS21470;old_locus_tag=SH04_21480 NZ_CP010443.1 Protein Homology CDS 4325548 4326144 . + 0 ID=cds4177;Parent=gene4284;Dbxref=Genbank:WP_000743193.1;Name=WP_000743193.1;Note=catalyzes the methylation of 16S rRNA at position G966;gbkey=CDS;gene=rsmD;product=ribosomal RNA small subunit methyltransferase D;protein_id=WP_000743193.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4326134 4326403 . + . ID=gene4285;Name=SH04_RS21475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21475;old_locus_tag=SH04_21485 NZ_CP010443.1 Protein Homology CDS 4326134 4326403 . + 0 ID=cds4178;Parent=gene4285;Dbxref=Genbank:WP_001311191.1;Name=WP_001311191.1;gbkey=CDS;product=DUF1145 domain-containing protein;protein_id=WP_001311191.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4326406 4326765 . - . ID=gene4286;Name=SH04_RS21480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21480;old_locus_tag=SH04_21490 NZ_CP010443.1 Protein Homology CDS 4326406 4326765 . - 0 ID=cds4179;Parent=gene4286;Dbxref=Genbank:WP_000042895.1;Name=WP_000042895.1;gbkey=CDS;product=DUF2500 domain-containing protein;protein_id=WP_000042895.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4326906 4327532 . + . ID=gene4287;Name=SH04_RS21485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21485;old_locus_tag=SH04_21495 NZ_CP010443.1 Protein Homology CDS 4326906 4327532 . + 0 ID=cds4180;Parent=gene4287;Dbxref=Genbank:WP_000964718.1;Name=WP_000964718.1;gbkey=CDS;product=membrane protein;protein_id=WP_000964718.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4327606 4329804 . + . ID=gene4288;Name=zntA;gbkey=Gene;gene=zntA;gene_biotype=protein_coding;locus_tag=SH04_RS21490;old_locus_tag=SH04_21500 NZ_CP010443.1 Protein Homology CDS 4327606 4329804 . + 0 ID=cds4181;Parent=gene4288;Dbxref=Genbank:WP_000106551.1;Name=WP_000106551.1;Note=P-type ATPase involved in the export of lead%2C cadmium%2C zinc and mercury;gbkey=CDS;gene=zntA;product=cadmium-transporting ATPase;protein_id=WP_000106551.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4329906 4330151 . - . ID=gene4289;Name=SH04_RS21495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21495;old_locus_tag=SH04_21505 NZ_CP010443.1 Protein Homology CDS 4329906 4330151 . - 0 ID=cds4182;Parent=gene4289;Dbxref=Genbank:WP_000130621.1;Name=WP_000130621.1;Note=TusA%3B transfers sulfur to TusBCD complex%3B involved in thiouridation of U34 position of some tRNAs;gbkey=CDS;product=sulfurtransferase TusA;protein_id=WP_000130621.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4330372 4331037 . + . ID=gene4290;Name=SH04_RS21500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21500;old_locus_tag=SH04_21510 NZ_CP010443.1 Protein Homology CDS 4330372 4331037 . + 0 ID=cds4183;Parent=gene4290;Dbxref=Genbank:WP_001100469.1;Name=WP_001100469.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001100469.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4331110 4331667 . + . ID=gene4291;Name=SH04_RS21505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21505;old_locus_tag=SH04_21515 NZ_CP010443.1 Protein Homology CDS 4331110 4331667 . + 0 ID=cds4184;Parent=gene4291;Dbxref=Genbank:WP_001245295.1;Name=WP_001245295.1;gbkey=CDS;product=protein DcrB;protein_id=WP_001245295.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4331671 4332888 . - . ID=gene4292;Name=SH04_RS21510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21510;old_locus_tag=SH04_21520 NZ_CP010443.1 Protein Homology CDS 4331671 4332888 . - 0 ID=cds4185;Parent=gene4292;Dbxref=Genbank:WP_001300943.1;Name=WP_001300943.1;gbkey=CDS;product=arabinose efflux transporter;protein_id=WP_001300943.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4333020 4334069 . + . ID=gene4293;Name=SH04_RS21515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21515;old_locus_tag=SH04_21525 NZ_CP010443.1 Protein Homology CDS 4333020 4334069 . + 0 ID=cds4186;Parent=gene4293;Dbxref=Genbank:WP_001300885.1;Name=WP_001300885.1;gbkey=CDS;product=pheromone autoinducer 2 transporter;protein_id=WP_001300885.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4334124 4334711 . + . ID=gene4294;Name=SH04_RS21520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21520;old_locus_tag=SH04_21530 NZ_CP010443.1 Protein Homology CDS 4334124 4334711 . + 0 ID=cds4187;Parent=gene4294;Dbxref=Genbank:WP_000285774.1;Name=WP_000285774.1;gbkey=CDS;product=4'-phosphopantetheinyl transferase;protein_id=WP_000285774.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4334822 4336396 . + . ID=gene4295;Name=SH04_RS21525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21525;old_locus_tag=SH04_21535 NZ_CP010443.1 Protein Homology CDS 4334822 4336396 . + 0 ID=cds4188;Parent=gene4295;Dbxref=Genbank:WP_000953361.1;Name=WP_000953361.1;gbkey=CDS;product=nickel-binding periplasmic protein;protein_id=WP_000953361.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4336396 4337340 . + . ID=gene4296;Name=SH04_RS21530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21530;old_locus_tag=SH04_21540 NZ_CP010443.1 Protein Homology CDS 4336396 4337340 . + 0 ID=cds4189;Parent=gene4296;Dbxref=Genbank:WP_000947068.1;Name=WP_000947068.1;Note=with NikACDE is involved in nickel transport into the cell;gbkey=CDS;product=nickel ABC transporter permease;protein_id=WP_000947068.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4337337 4338170 . + . ID=gene4297;Name=nikC;gbkey=Gene;gene=nikC;gene_biotype=protein_coding;locus_tag=SH04_RS21535;old_locus_tag=SH04_21545 NZ_CP010443.1 Protein Homology CDS 4337337 4338170 . + 0 ID=cds4190;Parent=gene4297;Dbxref=Genbank:WP_001008963.1;Name=WP_001008963.1;Note=with NikABDE is involved in nickel transport into the cell;gbkey=CDS;gene=nikC;product=nickel ABC transporter permease;protein_id=WP_001008963.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4338170 4338934 . + . ID=gene4298;Name=nikD;gbkey=Gene;gene=nikD;gene_biotype=protein_coding;locus_tag=SH04_RS21540;old_locus_tag=SH04_21550 NZ_CP010443.1 Protein Homology CDS 4338170 4338934 . + 0 ID=cds4191;Parent=gene4298;Dbxref=Genbank:WP_038432678.1;Name=WP_038432678.1;Note=with NikABCE is involved in nickel transport into the cell;gbkey=CDS;gene=nikD;product=nickel ABC transporter ATP-binding protein;protein_id=WP_038432678.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4338931 4339737 . + . ID=gene4299;Name=nikE;gbkey=Gene;gene=nikE;gene_biotype=protein_coding;locus_tag=SH04_RS21545;old_locus_tag=SH04_21555 NZ_CP010443.1 Protein Homology CDS 4338931 4339737 . + 0 ID=cds4192;Parent=gene4299;Dbxref=Genbank:WP_000173631.1;Name=WP_000173631.1;Note=with NikABCD is involved with nickel transport into the cell;gbkey=CDS;gene=nikE;product=nickel import ATP-binding protein NikE;protein_id=WP_000173631.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4339743 4340144 . + . ID=gene4300;Name=SH04_RS21550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21550;old_locus_tag=SH04_21560 NZ_CP010443.1 Protein Homology CDS 4339743 4340144 . + 0 ID=cds4193;Parent=gene4300;Dbxref=Genbank:WP_001190062.1;Name=WP_001190062.1;Note=Inhibits transcription at high concentrations of nickel;gbkey=CDS;product=nickel-responsive regulator;protein_id=WP_001190062.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4340346 4344035 . + . ID=id224;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4340347 4344582 . + . ID=gene4301;Name=SH04_RS21555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21555;old_locus_tag=SH04_21565 NZ_CP010443.1 Protein Homology CDS 4340347 4344582 . + 0 ID=cds4194;Parent=gene4301;Dbxref=Genbank:WP_000015298.1;Name=WP_000015298.1;gbkey=CDS;product=RHS element protein;protein_id=WP_000015298.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4344554 4344937 . + . ID=gene4302;Name=SH04_RS21560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21560;old_locus_tag=SH04_21570 NZ_CP010443.1 Protein Homology CDS 4344554 4344937 . + 0 ID=cds4195;Parent=gene4302;Dbxref=Genbank:WP_001271686.1;Name=WP_001271686.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001271686.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4344990 4346679 . + . ID=id225;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4345042 4345392 . + . ID=gene4303;Name=SH04_RS21565;end_range=4345392,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS21565;partial=true;pseudo=true NZ_CP010443.1 Protein Homology CDS 4345042 4345392 . + 0 ID=cds4196;Parent=gene4303;end_range=4345392,.;gbkey=CDS;partial=true;product=lyase;pseudo=true;transl_except=(pos:4345285..4345287%2Caa:Other);transl_table=11 NZ_CP010443.1 RefSeq gene 4345533 4346669 . + . ID=gene4304;Name=SH04_RS21570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21570;old_locus_tag=SH04_21580 NZ_CP010443.1 Protein Homology CDS 4345533 4346669 . + 0 ID=cds4197;Parent=gene4304;Dbxref=Genbank:WP_038432679.1;Name=WP_038432679.1;gbkey=CDS;product=H repeat-associated protein YhhI;protein_id=WP_038432679.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4346834 4347958 . - . ID=gene4305;Name=SH04_RS21575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21575;old_locus_tag=SH04_21585 NZ_CP010443.1 Protein Homology CDS 4346834 4347958 . - 0 ID=cds4198;Parent=gene4305;Dbxref=Genbank:WP_001216257.1;Name=WP_001216257.1;gbkey=CDS;product=inner membrane transport permease YhhJ;protein_id=WP_001216257.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4347958 4350693 . - . ID=gene4306;Name=SH04_RS21580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21580;old_locus_tag=SH04_21590 NZ_CP010443.1 Protein Homology CDS 4347958 4350693 . - 0 ID=cds4199;Parent=gene4306;Dbxref=Genbank:WP_000149156.1;Name=WP_000149156.1;gbkey=CDS;product=ribosome-associated ATPase;protein_id=WP_000149156.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4350690 4351757 . - . ID=gene4307;Name=SH04_RS21585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21585;old_locus_tag=SH04_21595 NZ_CP010443.1 Protein Homology CDS 4350690 4351757 . - 0 ID=cds4200;Parent=gene4307;Dbxref=Genbank:WP_000361477.1;Name=WP_000361477.1;gbkey=CDS;product=membrane fusion protein (MFP) of efflux pump;protein_id=WP_000361477.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4352123 4353745 . - . ID=gene4308;Name=SH04_RS21590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21590;old_locus_tag=SH04_21600 NZ_CP010443.1 Protein Homology CDS 4352123 4353745 . - 0 ID=cds4201;Parent=gene4308;Dbxref=Genbank:WP_038432682.1;Name=WP_038432682.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_038432682.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4354007 4355613 . - . ID=gene4309;Name=SH04_RS21595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS21595;pseudo=true NZ_CP010443.1 Protein Homology CDS 4354007 4355613 . - 0 ID=cds4202;Parent=gene4309;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 4355600 4355803 . - . ID=gene4310;Name=SH04_RS21600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21600;old_locus_tag=SH04_21610 NZ_CP010443.1 Protein Homology CDS 4355600 4355803 . - 0 ID=cds4203;Parent=gene4310;Dbxref=Genbank:WP_000923893.1;Name=WP_000923893.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000923893.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4355926 4356024 . - . ID=gene4311;Name=SH04_RS21605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21605;old_locus_tag=SH04_21615 NZ_CP010443.1 Protein Homology CDS 4355926 4356024 . - 0 ID=cds4204;Parent=gene4311;Dbxref=Genbank:WP_032082756.1;Name=WP_032082756.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032082756.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4356041 4357048 . + . ID=gene4312;Name=SH04_RS21610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21610;old_locus_tag=SH04_21620 NZ_CP010443.1 Protein Homology CDS 4356041 4357048 . + 0 ID=cds4205;Parent=gene4312;Dbxref=Genbank:WP_001315888.1;Name=WP_001315888.1;gbkey=CDS;product=membrane protein;protein_id=WP_001315888.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4357363 4358565 . - . ID=gene4313;Name=SH04_RS21615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21615;old_locus_tag=SH04_21625 NZ_CP010443.1 Protein Homology CDS 4357363 4358565 . - 0 ID=cds4206;Parent=gene4313;Dbxref=Genbank:WP_000439170.1;Name=WP_000439170.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000439170.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4358797 4360296 . + . ID=gene4314;Name=SH04_RS21620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21620;old_locus_tag=SH04_21630 NZ_CP010443.1 Protein Homology CDS 4358797 4360296 . + 0 ID=cds4207;Parent=gene4314;Dbxref=Genbank:WP_000902780.1;Name=WP_000902780.1;Note=involved in the transport of inorganic phosphate;gbkey=CDS;product=Low-affinity inorganic phosphate transporter 1;protein_id=WP_000902780.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4360540 4360875 . - . ID=gene4315;Name=SH04_RS21625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21625;old_locus_tag=SH04_21635 NZ_CP010443.1 Protein Homology CDS 4360540 4360875 . - 0 ID=cds4208;Parent=gene4315;Dbxref=Genbank:WP_000626187.1;Name=WP_000626187.1;Note=ppGpp-dependent%2C membrane associated%2C stress protein produced under conditions of nutrient deprivation%2C osmotic shock and oxidative stress;gbkey=CDS;product=universal stress protein B;protein_id=WP_000626187.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4361266 4361700 . + . ID=gene4316;Name=SH04_RS21630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21630;old_locus_tag=SH04_21640 NZ_CP010443.1 Protein Homology CDS 4361266 4361700 . + 0 ID=cds4209;Parent=gene4316;Dbxref=Genbank:WP_000323571.1;Name=WP_000323571.1;Note=involved in resistance to DNA-damaging agents;gbkey=CDS;product=universal stress protein A;protein_id=WP_000323571.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4362017 4363486 . + . ID=gene4317;Name=tppB;gbkey=Gene;gene=tppB;gene_biotype=protein_coding;gene_synonym=ydgR;locus_tag=SH04_RS21635;old_locus_tag=SH04_21645 NZ_CP010443.1 Protein Homology CDS 4362017 4363486 . + 0 ID=cds4210;Parent=gene4317;Dbxref=Genbank:WP_001098652.1;Name=WP_001098652.1;Note=mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium%3B member of proton-dependent oligopeptide transport (POT) system family%3B in Escherichia coli this gene is regulated by OmpR although not via osmoregulation;gbkey=CDS;gene=tppB;product=dipeptide and tripeptide permease B;protein_id=WP_001098652.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4363535 4364287 . - . ID=gene4318;Name=SH04_RS21640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21640;old_locus_tag=SH04_21650 NZ_CP010443.1 Protein Homology CDS 4363535 4364287 . - 0 ID=cds4211;Parent=gene4318;Dbxref=Genbank:WP_000686620.1;Name=WP_000686620.1;Note=predicted SAM-dependent methyltransferase;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase J;protein_id=WP_000686620.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4364295 4366337 . - . ID=gene4319;Name=SH04_RS21645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21645;old_locus_tag=SH04_21655 NZ_CP010443.1 Protein Homology CDS 4364295 4366337 . - 0 ID=cds4212;Parent=gene4319;Dbxref=Genbank:WP_001298719.1;Name=WP_001298719.1;gbkey=CDS;product=oligopeptidase A;protein_id=WP_001298719.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4366540 4367382 . + . ID=gene4320;Name=SH04_RS21650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21650;old_locus_tag=SH04_21660 NZ_CP010443.1 Protein Homology CDS 4366540 4367382 . + 0 ID=cds4213;Parent=gene4320;Dbxref=Genbank:WP_001300574.1;Name=WP_001300574.1;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase J;protein_id=WP_001300574.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4367454 4368806 . + . ID=gene4321;Name=SH04_RS21655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21655;old_locus_tag=SH04_21665 NZ_CP010443.1 Protein Homology CDS 4367454 4368806 . + 0 ID=cds4214;Parent=gene4321;Dbxref=Genbank:WP_038432684.1;Name=WP_038432684.1;Note=catalyzes the reduction of 2 glutathione to glutathione disulfide%3B maintains high levels of reduced glutathione in the cytosol%3B involved in redox regulation and oxidative defense;gbkey=CDS;product=glutathione reductase;protein_id=WP_038432684.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4368860 4368976 . - . ID=gene4322;Name=SH04_RS21660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21660;old_locus_tag=SH04_21670 NZ_CP010443.1 Protein Homology CDS 4368860 4368976 . - 0 ID=cds4215;Parent=gene4322;Dbxref=Genbank:WP_000555608.1;Name=WP_000555608.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000555608.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4368971 4369144 . + . ID=gene4323;Name=SH04_RS21665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21665;old_locus_tag=SH04_21675 NZ_CP010443.1 Protein Homology CDS 4368971 4369144 . + 0 ID=cds4216;Parent=gene4323;Dbxref=Genbank:WP_001300951.1;Name=WP_001300951.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001300951.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4369683 4370036 . + . ID=gene4324;Name=SH04_RS21670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21670;old_locus_tag=SH04_21680 NZ_CP010443.1 Protein Homology CDS 4369683 4370036 . + 0 ID=cds4217;Parent=gene4324;Dbxref=Genbank:WP_000008957.1;Name=WP_000008957.1;Note=regulates the expression of of the arsRBC involved in resistance to arsenic;gbkey=CDS;product=arsenical resistance operon repressor;protein_id=WP_000008957.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4370090 4371379 . + . ID=gene4325;Name=SH04_RS21675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21675;old_locus_tag=SH04_21685 NZ_CP010443.1 Protein Homology CDS 4370090 4371379 . + 0 ID=cds4218;Parent=gene4325;Dbxref=Genbank:WP_000922639.1;Name=WP_000922639.1;gbkey=CDS;product=arsenical pump membrane protein;protein_id=WP_000922639.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4371392 4371817 . + . ID=gene4326;Name=SH04_RS21680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21680;old_locus_tag=SH04_21690 NZ_CP010443.1 Protein Homology CDS 4371392 4371817 . + 0 ID=cds4219;Parent=gene4326;Dbxref=Genbank:WP_000065769.1;Name=WP_000065769.1;gbkey=CDS;product=arsenate reductase;protein_id=WP_000065769.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4372446 4373228 . + . ID=gene4327;Name=SH04_RS21685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21685;old_locus_tag=SH04_21695 NZ_CP010443.1 Protein Homology CDS 4372446 4373228 . + 0 ID=cds4220;Parent=gene4327;Dbxref=Genbank:WP_000020601.1;Name=WP_000020601.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000020601.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4373185 4374391 . + . ID=id226;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4373337 4374317 . - . ID=gene4328;Name=SH04_RS21690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21690;old_locus_tag=SH04_21700 NZ_CP010443.1 Protein Homology CDS 4373337 4374317 . - 0 ID=cds4221;Parent=gene4328;Dbxref=Genbank:WP_000019403.1;Name=WP_000019403.1;gbkey=CDS;product=transposase;protein_id=WP_000019403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4374383 4374868 . + . ID=gene4329;Name=SH04_RS21695;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS21695;partial=true;pseudo=true;start_range=.,4374383 NZ_CP010443.1 Protein Homology CDS 4374383 4374868 . + 0 ID=cds4222;Parent=gene4329;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,4374383;transl_table=11 NZ_CP010443.1 RefSeq gene 4375116 4375682 . + . ID=gene4330;Name=SH04_RS21700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21700;old_locus_tag=SH04_21710 NZ_CP010443.1 Protein Homology CDS 4375116 4375682 . + 0 ID=cds4223;Parent=gene4330;Dbxref=Genbank:WP_001350553.1;Name=WP_001350553.1;gbkey=CDS;product=outer membrane protein slp;protein_id=WP_001350553.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4375838 4376368 . + . ID=gene4331;Name=SH04_RS21705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21705;old_locus_tag=SH04_21715 NZ_CP010443.1 Protein Homology CDS 4375838 4376368 . + 0 ID=cds4224;Parent=gene4331;Dbxref=Genbank:WP_000478619.1;Name=WP_000478619.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000478619.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4376410 4377057 . - . ID=gene4332;Name=SH04_RS21710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21710;old_locus_tag=SH04_21720 NZ_CP010443.1 Protein Homology CDS 4376410 4377057 . - 0 ID=cds4225;Parent=gene4332;Dbxref=Genbank:WP_001296814.1;Name=WP_001296814.1;gbkey=CDS;product=magnesium transporter ATPase;protein_id=WP_001296814.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4377121 4377447 . - . ID=gene4333;Name=hdeB;gbkey=Gene;gene=hdeB;gene_biotype=protein_coding;locus_tag=SH04_RS21715;old_locus_tag=SH04_21725 NZ_CP010443.1 Protein Homology CDS 4377121 4377447 . - 0 ID=cds4226;Parent=gene4333;Dbxref=Genbank:WP_001298717.1;Name=WP_001298717.1;gbkey=CDS;gene=hdeB;product=acid stress chaperone HdeB;protein_id=WP_001298717.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4377563 4377895 . - . ID=gene4334;Name=SH04_RS21720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21720;old_locus_tag=SH04_21730 NZ_CP010443.1 Protein Homology CDS 4377563 4377895 . - 0 ID=cds4227;Parent=gene4334;Dbxref=Genbank:WP_000756550.1;Name=WP_000756550.1;Note=inactive form;gbkey=CDS;product=acid stress chaperone HdeA;protein_id=WP_000756550.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4378150 4378722 . + . ID=gene4335;Name=SH04_RS21725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21725;old_locus_tag=SH04_21735 NZ_CP010443.1 Protein Homology CDS 4378150 4378722 . + 0 ID=cds4228;Parent=gene4335;Dbxref=Genbank:WP_000965672.1;Name=WP_000965672.1;gbkey=CDS;product=protein HdeD;protein_id=WP_000965672.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4379521 4380048 . + . ID=gene4336;Name=SH04_RS21730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21730;old_locus_tag=SH04_21740 NZ_CP010443.1 Protein Homology CDS 4379521 4380048 . + 0 ID=cds4229;Parent=gene4336;Dbxref=Genbank:WP_000576690.1;Name=WP_000576690.1;gbkey=CDS;product=transcriptional regulator GadE;protein_id=WP_000576690.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4380049 4380327 . - . ID=gene4337;Name=SH04_RS21735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21735;old_locus_tag=SH04_21745 NZ_CP010443.1 Protein Homology CDS 4380049 4380327 . - 0 ID=cds4230;Parent=gene4337;Dbxref=Genbank:WP_001205329.1;Name=WP_001205329.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001205329.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4380387 4381544 . + . ID=gene4338;Name=SH04_RS21740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21740;old_locus_tag=SH04_21750 NZ_CP010443.1 Protein Homology CDS 4380387 4381544 . + 0 ID=cds4231;Parent=gene4338;Dbxref=Genbank:WP_001081984.1;Name=WP_001081984.1;gbkey=CDS;product=multidrug resistance protein MdtE;protein_id=WP_001081984.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4381569 4384682 . + . ID=gene4339;Name=SH04_RS21745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21745;old_locus_tag=SH04_21755 NZ_CP010443.1 Protein Homology CDS 4381569 4384682 . + 0 ID=cds4232;Parent=gene4339;Dbxref=Genbank:WP_000024872.1;Name=WP_000024872.1;gbkey=CDS;product=multidrug efflux RND transporter permease subunit;protein_id=WP_000024872.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4385045 4385773 . - . ID=gene4340;Name=SH04_RS21750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21750;old_locus_tag=SH04_21760 NZ_CP010443.1 Protein Homology CDS 4385045 4385773 . - 0 ID=cds4233;Parent=gene4340;Dbxref=Genbank:WP_000149999.1;Name=WP_000149999.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000149999.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4386141 4386965 . - . ID=gene4341;Name=SH04_RS21755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21755;old_locus_tag=SH04_21765 NZ_CP010443.1 Protein Homology CDS 4386141 4386965 . - 0 ID=cds4234;Parent=gene4341;Dbxref=Genbank:WP_001191059.1;Name=WP_001191059.1;Note=regulates genes in response to acid and/or during stationary phase;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001191059.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4387331 4388702 . + . ID=id227;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4387335 4388735 . - . ID=gene4342;Name=SH04_RS21760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21760;old_locus_tag=SH04_21770 NZ_CP010443.1 Protein Homology CDS 4387335 4388735 . - 0 ID=cds4235;Parent=gene4342;Dbxref=Genbank:WP_000372240.1;Name=WP_000372240.1;gbkey=CDS;product=glutamate decarboxylase alpha;protein_id=WP_000372240.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4388946 4390343 . - . ID=gene4343;Name=SH04_RS21765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21765;old_locus_tag=SH04_21775 NZ_CP010443.1 Protein Homology CDS 4388946 4390343 . - 0 ID=cds4236;Parent=gene4343;Dbxref=Genbank:WP_000784827.1;Name=WP_000784827.1;gbkey=CDS;product=cytochrome c peroxidase;protein_id=WP_000784827.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4390747 4392396 . + . ID=gene4344;Name=treF;gbkey=Gene;gene=treF;gene_biotype=protein_coding;locus_tag=SH04_RS21770;old_locus_tag=SH04_21780 NZ_CP010443.1 Protein Homology CDS 4390747 4392396 . + 0 ID=cds4237;Parent=gene4344;Dbxref=Genbank:WP_000934216.1;Name=WP_000934216.1;Note=cytoplasmic%3B catalyzes the hydrolysis of trehalose to glucose;gbkey=CDS;gene=treF;product=trehalase;protein_id=WP_000934216.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4392447 4393049 . - . ID=gene4345;Name=SH04_RS21775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21775;old_locus_tag=SH04_21785 NZ_CP010443.1 Protein Homology CDS 4392447 4393049 . - 0 ID=cds4238;Parent=gene4345;Dbxref=Genbank:WP_001167676.1;Name=WP_001167676.1;gbkey=CDS;product=LuxR family transcriptional regulator;protein_id=WP_001167676.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4393569 4394468 . + . ID=gene4346;Name=SH04_RS21780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21780;old_locus_tag=SH04_21790 NZ_CP010443.1 Protein Homology CDS 4393569 4394468 . + 0 ID=cds4239;Parent=gene4346;Dbxref=Genbank:WP_000357790.1;Name=WP_000357790.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000357790.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4394517 4395530 . + . ID=gene4347;Name=SH04_RS21785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21785;old_locus_tag=SH04_21795 NZ_CP010443.1 Protein Homology CDS 4394517 4395530 . + 0 ID=cds4240;Parent=gene4347;Dbxref=Genbank:WP_000191237.1;Name=WP_000191237.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000191237.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4395941 4397263 . + . ID=gene4348;Name=SH04_RS21790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21790;old_locus_tag=SH04_21800 NZ_CP010443.1 Protein Homology CDS 4395941 4397263 . + 0 ID=cds4241;Parent=gene4348;Dbxref=Genbank:WP_001149003.1;Name=WP_001149003.1;gbkey=CDS;product=metabolite transporter;protein_id=WP_001149003.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4397445 4399505 . - . ID=gene4349;Name=SH04_RS21795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21795;old_locus_tag=SH04_21805 NZ_CP010443.1 Protein Homology CDS 4397445 4399505 . - 0 ID=cds4242;Parent=gene4349;Dbxref=Genbank:WP_001296794.1;Name=WP_001296794.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296794.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4399575 4400342 . - . ID=gene4350;Name=SH04_RS21800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21800;old_locus_tag=SH04_21810 NZ_CP010443.1 Protein Homology CDS 4399575 4400342 . - 0 ID=cds4243;Parent=gene4350;Dbxref=Genbank:WP_001295219.1;Name=WP_001295219.1;Note=in Escherichia coli this protein is involved in flagellar function;gbkey=CDS;product=cyclic di-GMP phosphodiesterase YhjH;protein_id=WP_001295219.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4400296 4400490 . + . ID=gene4351;Name=SH04_RS21805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21805;old_locus_tag=SH04_21815 NZ_CP010443.1 Protein Homology CDS 4400296 4400490 . + 0 ID=cds4244;Parent=gene4351;Dbxref=Genbank:WP_001328969.1;Name=WP_001328969.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001328969.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4400574 4401503 . + . ID=gene4352;Name=SH04_RS21810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21810;old_locus_tag=SH04_21820 NZ_CP010443.1 Protein Homology CDS 4400574 4401503 . + 0 ID=cds4245;Parent=gene4352;Dbxref=Genbank:WP_000037562.1;Name=WP_000037562.1;Note=catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate-6-phosphate from 2-dehydro-3-deoxy-D-gluconate;gbkey=CDS;product=2-dehydro-3-deoxygluconokinase;protein_id=WP_000037562.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4401599 4403095 . - . ID=gene4353;Name=SH04_RS21815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21815;old_locus_tag=SH04_21825 NZ_CP010443.1 Protein Homology CDS 4401599 4403095 . - 0 ID=cds4246;Parent=gene4353;Dbxref=Genbank:WP_001163141.1;Name=WP_001163141.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001163141.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4403316 4404602 . - . ID=gene4354;Name=SH04_RS21820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21820;old_locus_tag=SH04_21830 NZ_CP010443.1 Protein Homology CDS 4403316 4404602 . - 0 ID=cds4247;Parent=gene4354;Dbxref=Genbank:WP_000858214.1;Name=WP_000858214.1;Note=involved in the transport of C4-dicarboxylates across the membrane;gbkey=CDS;product=C4-dicarboxylate ABC transporter;protein_id=WP_000858214.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4404785 4406740 . - . ID=gene4355;Name=SH04_RS21825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21825;old_locus_tag=SH04_21835 NZ_CP010443.1 Protein Homology CDS 4404785 4406740 . - 0 ID=cds4248;Parent=gene4355;Dbxref=Genbank:WP_001300629.1;Name=WP_001300629.1;Note=HmsP in Yersinia pestis plays a role in invasion of epithelial cells%3B the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation%3B inner membrane protein;gbkey=CDS;product=biofilm formation regulator HmsP;protein_id=WP_001300629.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4406855 4410328 . - . ID=gene4356;Name=SH04_RS21830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21830;old_locus_tag=SH04_21840 NZ_CP010443.1 Protein Homology CDS 4406855 4410328 . - 0 ID=cds4249;Parent=gene4356;Dbxref=Genbank:WP_001225124.1;Name=WP_001225124.1;Note=cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium%3B the cellulose biosynthesis genes bcsA%2C bcsB%2C bcsZ and bcsC are constitutively transcribed%2C however%2C cellulose synthesis is dependent on the expression of adrA;gbkey=CDS;product=cellulose synthase operon protein C;protein_id=WP_001225124.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4410310 4411416 . - . ID=gene4357;Name=SH04_RS21835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21835;old_locus_tag=SH04_21845 NZ_CP010443.1 Protein Homology CDS 4410310 4411416 . - 0 ID=cds4250;Parent=gene4357;Dbxref=Genbank:WP_001311203.1;Name=WP_001311203.1;Note=catalyzes the hydrolysis of 1%2C4-beta-D-glucosidic linkages in cellulose%2C lichenin and cereal beta-D-glucans;gbkey=CDS;product=endoglucanase;protein_id=WP_001311203.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4411423 4413762 . - . ID=gene4358;Name=SH04_RS21840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21840;old_locus_tag=SH04_21850 NZ_CP010443.1 Protein Homology CDS 4411423 4413762 . - 0 ID=cds4251;Parent=gene4358;Dbxref=Genbank:WP_001407405.1;Name=WP_001407405.1;Note=binds the cellulose synthase activator%2C bis-(3'-5') cyclic diguanylic acid (c-di-GMP);gbkey=CDS;product=cyclic di-GMP-binding protein;protein_id=WP_001407405.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4413773 4416391 . - . ID=gene4359;Name=bcsA;gbkey=Gene;gene=bcsA;gene_biotype=protein_coding;locus_tag=SH04_RS21845;old_locus_tag=SH04_21855 NZ_CP010443.1 Protein Homology CDS 4413773 4416391 . - 0 ID=cds4252;Parent=gene4359;Dbxref=Genbank:WP_000025892.1;Name=WP_000025892.1;Note=polymerizes uridine 5'-diphosphate glucose to cellulose%3B acts with BcsB%2C BcsZ and BcsC in cellulose biosynthesis;gbkey=CDS;gene=bcsA;product=cellulose synthase catalytic subunit [UDP-forming];protein_id=WP_000025892.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4416388 4417059 . - . ID=gene4360;Name=SH04_RS21850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21850;old_locus_tag=SH04_21860 NZ_CP010443.1 Protein Homology CDS 4416388 4417059 . - 0 ID=cds4253;Parent=gene4360;Dbxref=Genbank:WP_000900250.1;Name=WP_000900250.1;gbkey=CDS;product=cell division protein;protein_id=WP_000900250.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4417152 4417340 . - . ID=gene4361;Name=SH04_RS21855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21855;old_locus_tag=SH04_21865 NZ_CP010443.1 Protein Homology CDS 4417152 4417340 . - 0 ID=cds4254;Parent=gene4361;Dbxref=Genbank:WP_001063318.1;Name=WP_001063318.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001063318.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4417581 4418783 . + . ID=id228;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4417731 4418711 . - . ID=gene4362;Name=SH04_RS21860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21860;old_locus_tag=SH04_21870 NZ_CP010443.1 Protein Homology CDS 4417731 4418711 . - 0 ID=cds4255;Parent=gene4362;Dbxref=Genbank:WP_000019403.1;Name=WP_000019403.1;gbkey=CDS;product=transposase;protein_id=WP_000019403.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4418824 4420383 . + . ID=gene4363;Name=SH04_RS21865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21865;old_locus_tag=SH04_21875 NZ_CP010443.1 Protein Homology CDS 4418824 4420383 . + 0 ID=cds4256;Parent=gene4363;Dbxref=Genbank:WP_001296789.1;Name=WP_001296789.1;Note=required for cellulose biosynthesis;gbkey=CDS;product=cellulose biosynthesis protein BcsE;protein_id=WP_001296789.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4420380 4420571 . + . ID=gene4364;Name=SH04_RS21870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21870;old_locus_tag=SH04_21880 NZ_CP010443.1 Protein Homology CDS 4420380 4420571 . + 0 ID=cds4257;Parent=gene4364;Dbxref=Genbank:WP_000988308.1;Name=WP_000988308.1;gbkey=CDS;product=protein BcsF;protein_id=WP_000988308.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4420568 4422247 . + . ID=gene4365;Name=SH04_RS21875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21875;old_locus_tag=SH04_21885 NZ_CP010443.1 Protein Homology CDS 4420568 4422247 . + 0 ID=cds4258;Parent=gene4365;Dbxref=Genbank:WP_000191622.1;Name=WP_000191622.1;gbkey=CDS;product=protein BcsG;protein_id=WP_000191622.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4422334 4422441 . - . ID=gene4366;Name=SH04_RS21880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21880 NZ_CP010443.1 Protein Homology CDS 4422334 4422441 . - 0 ID=cds4259;Parent=gene4366;Dbxref=Genbank:WP_000141634.1;Name=WP_000141634.1;gbkey=CDS;product=small toxic polypeptide LdrD;protein_id=WP_000141634.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4422606 4422767 . - . ID=gene4367;Name=SH04_RS21885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21885;old_locus_tag=SH04_21895 NZ_CP010443.1 Protein Homology CDS 4422606 4422767 . - 0 ID=cds4260;Parent=gene4367;Dbxref=Genbank:WP_001326762.1;Name=WP_001326762.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001326762.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4422917 4424188 . + . ID=gene4368;Name=SH04_RS21890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21890;old_locus_tag=SH04_21900 NZ_CP010443.1 Protein Homology CDS 4422917 4424188 . + 0 ID=cds4261;Parent=gene4368;Dbxref=Genbank:WP_001295225.1;Name=WP_001295225.1;gbkey=CDS;product=transporter;protein_id=WP_001295225.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4424218 4425222 . - . ID=gene4369;Name=dppF;gbkey=Gene;gene=dppF;gene_biotype=protein_coding;locus_tag=SH04_RS21895;old_locus_tag=SH04_21905 NZ_CP010443.1 Protein Homology CDS 4424218 4425222 . - 0 ID=cds4262;Parent=gene4369;Dbxref=Genbank:WP_000107012.1;Name=WP_000107012.1;Note=Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides;gbkey=CDS;gene=dppF;product=dipeptide transport ATP-binding protein DppF;protein_id=WP_000107012.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4425219 4426202 . - . ID=gene4370;Name=dppD;gbkey=Gene;gene=dppD;gene_biotype=protein_coding;locus_tag=SH04_RS21900;old_locus_tag=SH04_21910 NZ_CP010443.1 Protein Homology CDS 4425219 4426202 . - 0 ID=cds4263;Parent=gene4370;Dbxref=Genbank:WP_001196486.1;Name=WP_001196486.1;Note=DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF;gbkey=CDS;gene=dppD;product=dipeptide transport ATP-binding protein DppD;protein_id=WP_001196486.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4426213 4427115 . - . ID=gene4371;Name=SH04_RS21905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21905;old_locus_tag=SH04_21915 NZ_CP010443.1 Protein Homology CDS 4426213 4427115 . - 0 ID=cds4264;Parent=gene4371;Dbxref=Genbank:WP_000084677.1;Name=WP_000084677.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_000084677.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4427125 4428144 . - . ID=gene4372;Name=SH04_RS21910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21910;old_locus_tag=SH04_21920 NZ_CP010443.1 Protein Homology CDS 4427125 4428144 . - 0 ID=cds4265;Parent=gene4372;Dbxref=Genbank:WP_000938855.1;Name=WP_000938855.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_000938855.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4428162 4428389 . + . ID=gene4373;Name=SH04_RS21915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21915;old_locus_tag=SH04_21925 NZ_CP010443.1 Protein Homology CDS 4428162 4428389 . + 0 ID=cds4266;Parent=gene4373;Dbxref=Genbank:WP_001300936.1;Name=WP_001300936.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001300936.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4428452 4430059 . - . ID=gene4374;Name=SH04_RS21920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21920;old_locus_tag=SH04_21930 NZ_CP010443.1 Protein Homology CDS 4428452 4430059 . - 0 ID=cds4267;Parent=gene4374;Dbxref=Genbank:WP_001222883.1;Name=WP_001222883.1;Note=DppABCDF is involved in the transport of dipeptides%3B also binds heme and mediates chemotaxis to dipeptides;gbkey=CDS;product=periplasmic dipeptide transporter;protein_id=WP_001222883.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4430411 4430671 . - . ID=gene4375;Name=SH04_RS21925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21925;old_locus_tag=SH04_21935 NZ_CP010443.1 Protein Homology CDS 4430411 4430671 . - 0 ID=cds4268;Parent=gene4375;Dbxref=Genbank:WP_001110989.1;Name=WP_001110989.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001110989.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4430713 4430820 . + . ID=id229;gbkey=repeat_region NZ_CP010443.1 RefSeq repeat_region 4430881 4430988 . + . ID=id230;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4430970 4431046 . - . ID=gene4376;Name=SH04_RS21930;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS21930;old_locus_tag=SH04_21940 NZ_CP010443.1 tRNAscan-SE tRNA 4430970 4431046 . - . ID=rna107;Parent=gene4376;anticodon=(pos:complement(4431010..4431012));gbkey=tRNA;product=tRNA-Pro NZ_CP010443.1 tRNAscan-SE exon 4430970 4431046 . - . ID=id231;Parent=rna107;anticodon=(pos:complement(4431010..4431012));gbkey=tRNA;product=tRNA-Pro NZ_CP010443.1 RefSeq gene 4431138 4432829 . - . ID=gene4377;Name=SH04_RS21935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21935;old_locus_tag=SH04_21945 NZ_CP010443.1 Protein Homology CDS 4431138 4432829 . - 0 ID=cds4269;Parent=gene4377;Dbxref=Genbank:WP_001269197.1;Name=WP_001269197.1;Note=catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide;gbkey=CDS;product=phosphoethanolamine transferase EptB;protein_id=WP_001269197.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4433153 4434361 . - . ID=gene4378;Name=SH04_RS21940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21940;old_locus_tag=SH04_21950 NZ_CP010443.1 Protein Homology CDS 4433153 4434361 . - 0 ID=cds4270;Parent=gene4378;Dbxref=Genbank:WP_000189019.1;Name=WP_000189019.1;gbkey=CDS;product=pyruvate-inducible inner membrane protein transporter;protein_id=WP_000189019.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4434590 4435288 . - . ID=gene4379;Name=SH04_RS21945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21945;old_locus_tag=SH04_21955 NZ_CP010443.1 Protein Homology CDS 4434590 4435288 . - 0 ID=cds4271;Parent=gene4379;Dbxref=Genbank:WP_001299523.1;Name=WP_001299523.1;gbkey=CDS;product=autotransporter beta-domain protein;protein_id=WP_001299523.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4435446 4436009 . + . ID=gene4380;Name=SH04_RS21950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21950;old_locus_tag=SH04_21960 NZ_CP010443.1 Protein Homology CDS 4435446 4436009 . + 0 ID=cds4272;Parent=gene4380;Dbxref=Genbank:WP_000438957.1;Name=WP_000438957.1;gbkey=CDS;product=DNA-3-methyladenine glycosylase 1;protein_id=WP_000438957.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4436006 4436446 . + . ID=gene4381;Name=SH04_RS21955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21955;old_locus_tag=SH04_21965 NZ_CP010443.1 Protein Homology CDS 4436006 4436446 . + 0 ID=cds4273;Parent=gene4381;Dbxref=Genbank:WP_000617473.1;Name=WP_000617473.1;gbkey=CDS;product=GNAT family acetyltransferase;protein_id=WP_000617473.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4436415 4438694 . - . ID=gene4382;Name=SH04_RS21960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21960;old_locus_tag=SH04_21970 NZ_CP010443.1 Protein Homology CDS 4436415 4438694 . - 0 ID=cds4274;Parent=gene4382;Dbxref=Genbank:WP_001311208.1;Name=WP_001311208.1;Note=catalyzes the reduction of trimethylamine-N-oxide to form trimethylamine;gbkey=CDS;product=biotin sulfoxide reductase;protein_id=WP_001311208.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4438901 4439560 . + . ID=gene4383;Name=SH04_RS21965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21965;old_locus_tag=SH04_21975 NZ_CP010443.1 Protein Homology CDS 4438901 4439560 . + 0 ID=cds4275;Parent=gene4383;Dbxref=Genbank:WP_000747625.1;Name=WP_000747625.1;gbkey=CDS;product=lipoprotein;protein_id=WP_000747625.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4439664 4440638 . + . ID=gene4384;Name=SH04_RS21970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21970;old_locus_tag=SH04_21980 NZ_CP010443.1 Protein Homology CDS 4439664 4440638 . + 0 ID=cds4276;Parent=gene4384;Dbxref=Genbank:WP_000805038.1;Name=WP_000805038.1;Note=catalyzes the formation of glycolate from glyoxylate and glycerate from hydroxypyruvate;gbkey=CDS;product=glyoxylate/hydroxypyruvate reductase B;protein_id=WP_000805038.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4440688 4441398 . - . ID=gene4385;Name=SH04_RS21975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21975;old_locus_tag=SH04_21985 NZ_CP010443.1 Protein Homology CDS 4440688 4441398 . - 0 ID=cds4277;Parent=gene4385;Dbxref=Genbank:WP_000190516.1;Name=WP_000190516.1;gbkey=CDS;product=DUF3053 domain-containing protein;protein_id=WP_000190516.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4441832 4442122 . + . ID=gene4386;Name=SH04_RS21980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21980;old_locus_tag=SH04_21990 NZ_CP010443.1 Protein Homology CDS 4441832 4442122 . + 0 ID=cds4278;Parent=gene4386;Dbxref=Genbank:WP_000455798.1;Name=WP_000455798.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000455798.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4442403 4442615 . + . ID=gene4387;Name=SH04_RS21985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21985;old_locus_tag=SH04_21995 NZ_CP010443.1 Protein Homology CDS 4442403 4442615 . + 0 ID=cds4279;Parent=gene4387;Dbxref=Genbank:WP_000014594.1;Name=WP_000014594.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_000014594.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4442802 4442954 . - . ID=gene4388;Name=SH04_RS21990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21990;old_locus_tag=SH04_22000 NZ_CP010443.1 Protein Homology CDS 4442802 4442954 . - 0 ID=cds4280;Parent=gene4388;Dbxref=Genbank:WP_001135732.1;Name=WP_001135732.1;gbkey=CDS;product=protein HokA;protein_id=WP_001135732.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4443034 4443555 . + . ID=gene4389;Name=SH04_RS21995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS21995;old_locus_tag=SH04_22005 NZ_CP010443.1 Protein Homology CDS 4443034 4443555 . + 0 ID=cds4281;Parent=gene4389;Dbxref=Genbank:WP_000042691.1;Name=WP_000042691.1;gbkey=CDS;product=transposase;protein_id=WP_000042691.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4443552 4444403 . + . ID=gene4390;Name=SH04_RS22000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22000;old_locus_tag=SH04_22010 NZ_CP010443.1 Protein Homology CDS 4443552 4444403 . + 0 ID=cds4282;Parent=gene4390;Dbxref=Genbank:WP_000866395.1;Name=WP_000866395.1;gbkey=CDS;product=transposase;protein_id=WP_000866395.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4444682 4446751 . - . ID=gene4391;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=SH04_RS22005;old_locus_tag=SH04_22015 NZ_CP010443.1 Protein Homology CDS 4444682 4446751 . - 0 ID=cds4283;Parent=gene4391;Dbxref=Genbank:WP_001291772.1;Name=WP_001291772.1;Note=glycine--tRNA ligase beta chain%3B glyS%3B class II aminoacyl tRNA synthetase%3B tetramer of alpha(2)beta(2)%3B catalyzes a two-step reaction%3B first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP%3B second by transfer of the aminoacyl-adenylate to its tRNA;gbkey=CDS;gene=glyS;product=glycine--tRNA ligase subunit beta;protein_id=WP_001291772.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4446761 4447672 . - . ID=gene4392;Name=SH04_RS22010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22010;old_locus_tag=SH04_22020 NZ_CP010443.1 Protein Homology CDS 4446761 4447672 . - 0 ID=cds4284;Parent=gene4392;Dbxref=Genbank:WP_001168544.1;Name=WP_001168544.1;gbkey=CDS;product=glycine--tRNA ligase subunit alpha;protein_id=WP_001168544.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4447767 4448066 . - . ID=gene4393;Name=SH04_RS22015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22015;old_locus_tag=SH04_22025 NZ_CP010443.1 Protein Homology CDS 4447767 4448066 . - 0 ID=cds4285;Parent=gene4393;Dbxref=Genbank:WP_000980107.1;Name=WP_000980107.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000980107.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4448241 4449236 . + . ID=gene4394;Name=SH04_RS22020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22020;old_locus_tag=SH04_22030 NZ_CP010443.1 Protein Homology CDS 4448241 4449236 . + 0 ID=cds4286;Parent=gene4394;Dbxref=Genbank:WP_001182650.1;Name=WP_001182650.1;Note=involved in enterobacterial common antigen biosynthesis%3B catalyzes the addition of O-acetyl groups to the N-acetyl-D-glucosamine residues of the trisaccharide repeat units of the enterobacterial common antigen;gbkey=CDS;product=hypothetical protein;protein_id=WP_001182650.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4449278 4449715 . - . ID=gene4395;Name=SH04_RS22025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22025;old_locus_tag=SH04_22035 NZ_CP010443.1 Protein Homology CDS 4449278 4449715 . - 0 ID=cds4287;Parent=gene4395;Dbxref=Genbank:WP_001296808.1;Name=WP_001296808.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296808.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4449761 4450102 . - . ID=gene4396;Name=SH04_RS22030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22030;old_locus_tag=SH04_22040 NZ_CP010443.1 Protein Homology CDS 4449761 4450102 . - 0 ID=cds4288;Parent=gene4396;Dbxref=Genbank:WP_001295228.1;Name=WP_001295228.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295228.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4450271 4451725 . - . ID=gene4397;Name=SH04_RS22035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22035;old_locus_tag=SH04_22045 NZ_CP010443.1 Protein Homology CDS 4450271 4451725 . - 0 ID=cds4289;Parent=gene4397;Dbxref=Genbank:WP_038432687.1;Name=WP_038432687.1;Note=catalyzes the formation of D-xylulose-5-phosphate fro D-xylulose;gbkey=CDS;product=xylulose kinase;protein_id=WP_038432687.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4451797 4453119 . - . ID=gene4398;Name=SH04_RS22040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22040;old_locus_tag=SH04_22050 NZ_CP010443.1 Protein Homology CDS 4451797 4453119 . - 0 ID=cds4290;Parent=gene4398;Dbxref=Genbank:WP_038432690.1;Name=WP_038432690.1;Note=catalyzes the interconversion of D-xylose to D-xylulose;gbkey=CDS;product=xylose isomerase;protein_id=WP_038432690.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4453407 4453784 . + . ID=gene4399;Name=xylF;end_range=4453784,.;gbkey=Gene;gene=xylF;gene_biotype=pseudogene;locus_tag=SH04_RS22045;partial=true;pseudo=true NZ_CP010443.1 Protein Homology CDS 4453407 4453784 . + 0 ID=cds4291;Parent=gene4399;Note=periplasmic substrate-binding component of the ATP-dependent xylose transport system%3B high affinity;end_range=4453784,.;exception=unextendable partial coding region;gbkey=CDS;gene=xylF;partial=true;product=D-xylose transporter subunit XylF;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4453783 4454550 . + . ID=id232;gbkey=repeat_region;gene=xylF NZ_CP010443.1 RefSeq gene 4453798 4454301 . - . ID=gene4400;Name=SH04_RS22050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22050;old_locus_tag=SH04_22060 NZ_CP010443.1 Protein Homology CDS 4453798 4454301 . - 0 ID=cds4292;Parent=gene4400;Dbxref=Genbank:WP_001119362.1;Name=WP_001119362.1;gbkey=CDS;product=transposase;protein_id=WP_001119362.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4454550 4455254 . + . ID=gene4401;Name=xylF;gbkey=Gene;gene=xylF;gene_biotype=pseudogene;locus_tag=SH04_RS22055;partial=true;pseudo=true;start_range=.,4454550 NZ_CP010443.1 Protein Homology CDS 4454550 4455254 . + 0 ID=cds4293;Parent=gene4401;Note=periplasmic substrate-binding component of the ATP-dependent xylose transport system%3B high affinity;exception=unextendable partial coding region;gbkey=CDS;gene=xylF;partial=true;product=D-xylose transporter subunit XylF;pseudo=true;start_range=.,4454550;transl_table=11 NZ_CP010443.1 RefSeq gene 4455332 4456873 . + . ID=gene4402;Name=SH04_RS22060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22060;old_locus_tag=SH04_22070 NZ_CP010443.1 Protein Homology CDS 4455332 4456873 . + 0 ID=cds4294;Parent=gene4402;Dbxref=Genbank:WP_001146473.1;Name=WP_001146473.1;Note=with XylFH is part of the high affinity xylose ABC transporter;gbkey=CDS;product=xylose import ATP-binding protein XylG;protein_id=WP_001146473.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4456851 4458032 . + . ID=gene4403;Name=SH04_RS22065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22065;old_locus_tag=SH04_22075 NZ_CP010443.1 Protein Homology CDS 4456851 4458032 . + 0 ID=cds4295;Parent=gene4403;Dbxref=Genbank:WP_000045978.1;Name=WP_000045978.1;gbkey=CDS;product=xylose ABC transporter permease;protein_id=WP_000045978.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4458110 4459288 . + . ID=gene4404;Name=SH04_RS22070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22070;old_locus_tag=SH04_22080 NZ_CP010443.1 Protein Homology CDS 4458110 4459288 . + 0 ID=cds4296;Parent=gene4404;Dbxref=Genbank:WP_000494484.1;Name=WP_000494484.1;gbkey=CDS;product=xylose operon regulatory protein;protein_id=WP_000494484.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4459484 4460308 . - . ID=gene4405;Name=SH04_RS22075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22075;old_locus_tag=SH04_22085 NZ_CP010443.1 Protein Homology CDS 4459484 4460308 . - 0 ID=cds4297;Parent=gene4405;Dbxref=Genbank:WP_001297957.1;Name=WP_001297957.1;gbkey=CDS;product=protein bax;protein_id=WP_001297957.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4460628 4462658 . + . ID=gene4406;Name=malS;gbkey=Gene;gene=malS;gene_biotype=protein_coding;locus_tag=SH04_RS22080;old_locus_tag=SH04_22090 NZ_CP010443.1 Protein Homology CDS 4460628 4462658 . + 0 ID=cds4298;Parent=gene4406;Dbxref=Genbank:WP_000761225.1;Name=WP_000761225.1;Note=periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB%3B hydrolyzes alpha-(1%2C4) glycosidic linkages%3B contains internal disulfide bonds;gbkey=CDS;gene=malS;product=alpha-amylase;protein_id=WP_000761225.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4462836 4464089 . + . ID=gene4407;Name=avtA;gbkey=Gene;gene=avtA;gene_biotype=protein_coding;locus_tag=SH04_RS22085;old_locus_tag=SH04_22095 NZ_CP010443.1 Protein Homology CDS 4462836 4464089 . + 0 ID=cds4299;Parent=gene4407;Dbxref=Genbank:WP_000144363.1;Name=WP_000144363.1;Note=transaminase C%3B catalyzes transamination of alanine%2C valine%2C and 2-aminobutyrate with their respective 2-keto acids%3B also catalyzes terminal step in valine biosynthesis;gbkey=CDS;gene=avtA;product=valine--pyruvate aminotransferase;protein_id=WP_000144363.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4464093 4464221 . + . ID=gene4408;Name=SH04_RS22090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22090;old_locus_tag=SH04_22100 NZ_CP010443.1 Protein Homology CDS 4464093 4464221 . + 0 ID=cds4300;Parent=gene4408;Dbxref=Genbank:WP_001331222.1;Name=WP_001331222.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001331222.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4464240 4464713 . - . ID=gene4409;Name=SH04_RS22095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22095;old_locus_tag=SH04_22105 NZ_CP010443.1 Protein Homology CDS 4464240 4464713 . - 0 ID=cds4301;Parent=gene4409;Dbxref=Genbank:WP_001300918.1;Name=WP_001300918.1;gbkey=CDS;product=hydrogenase 4Fe-4S ferredoxin-type component;protein_id=WP_001300918.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4464815 4465663 . - . ID=gene4410;Name=SH04_RS22100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22100;old_locus_tag=SH04_22110 NZ_CP010443.1 Protein Homology CDS 4464815 4465663 . - 0 ID=cds4302;Parent=gene4410;Dbxref=Genbank:WP_000514240.1;Name=WP_000514240.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000514240.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4465864 4466862 . + . ID=gene4411;Name=SH04_RS22105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22105;old_locus_tag=SH04_22115 NZ_CP010443.1 Protein Homology CDS 4465864 4466862 . + 0 ID=cds4303;Parent=gene4411;Dbxref=Genbank:WP_000869037.1;Name=WP_000869037.1;Note=NAD(P)H-dependent%3B catalyzes the reduction of 2%2C3-diketo-L-gulonate to 3-keto-L-gulonate;gbkey=CDS;product=2%2C3-diketo-L-gulonate reductase;protein_id=WP_000869037.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4466874 4467341 . + . ID=gene4412;Name=SH04_RS22110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22110;old_locus_tag=SH04_22120 NZ_CP010443.1 Protein Homology CDS 4466874 4467341 . + 0 ID=cds4304;Parent=gene4412;Dbxref=Genbank:WP_000576079.1;Name=WP_000576079.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000576079.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4467459 4467932 . + . ID=gene4413;Name=SH04_RS22115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22115;old_locus_tag=SH04_22125 NZ_CP010443.1 Protein Homology CDS 4467459 4467932 . + 0 ID=cds4305;Parent=gene4413;Dbxref=Genbank:WP_000721664.1;Name=WP_000721664.1;Note=membrane-spanning protein involved in uptake of 2%2C3-diketo-L-gulonate%3B part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO;gbkey=CDS;product=2%2C3-diketo-L-gulonate TRAP transporter permease;protein_id=WP_000721664.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4467935 4469212 . + . ID=gene4414;Name=SH04_RS22120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22120;old_locus_tag=SH04_22130 NZ_CP010443.1 Protein Homology CDS 4467935 4469212 . + 0 ID=cds4306;Parent=gene4414;Dbxref=Genbank:WP_000279599.1;Name=WP_000279599.1;Note=TRAP family transporter%3B with YiaMO is involved in the uptake of L-dehydroascorbate;gbkey=CDS;product=2%2C3-diketo-L-gulonate TRAP transporter permease;protein_id=WP_000279599.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4469225 4470211 . + . ID=gene4415;Name=SH04_RS22125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22125;old_locus_tag=SH04_22135 NZ_CP010443.1 Protein Homology CDS 4469225 4470211 . + 0 ID=cds4307;Parent=gene4415;Dbxref=Genbank:WP_000776887.1;Name=WP_000776887.1;Note=involved in the transport of 2%2C3-diketo-L-gulonate;gbkey=CDS;product=2%2C3-diketo-L-gulonate ABC transporter substrate-binding protein;protein_id=WP_000776887.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4470215 4471711 . + . ID=gene4416;Name=SH04_RS22130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22130;old_locus_tag=SH04_22140 NZ_CP010443.1 Protein Homology CDS 4470215 4471711 . + 0 ID=cds4308;Parent=gene4416;Dbxref=Genbank:WP_000196054.1;Name=WP_000196054.1;Note=catalyzes the formation of L-xylulose 5-phosphate and 3-dehydro-L-gulonate 6-phosphate from L-xylulose or 3-dehydro-L-gulonate%2C respectively;gbkey=CDS;product=L-xylulose/3-keto-L-gulonate kinase;protein_id=WP_000196054.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4471708 4472370 . + . ID=gene4417;Name=sgbH;gbkey=Gene;gene=sgbH;gene_biotype=protein_coding;locus_tag=SH04_RS22135;old_locus_tag=SH04_22145 NZ_CP010443.1 Protein Homology CDS 4471708 4472370 . + 0 ID=cds4309;Parent=gene4417;Dbxref=Genbank:WP_038432695.1;Name=WP_038432695.1;Note=catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate;gbkey=CDS;gene=sgbH;product=3-keto-L-gulonate-6-phosphate decarboxylase sgbH;protein_id=WP_038432695.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4472363 4473223 . + . ID=gene4418;Name=SH04_RS22140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22140;old_locus_tag=SH04_22150 NZ_CP010443.1 Protein Homology CDS 4472363 4473223 . + 0 ID=cds4310;Parent=gene4418;Dbxref=Genbank:WP_001350555.1;Name=WP_001350555.1;Note=L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated%3B may be involved in the utilization of 2%2C3-diketo-L-gulonate;gbkey=CDS;product=L-xylulose 5-phosphate 3-epimerase;protein_id=WP_001350555.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4473217 4473912 . + . ID=gene4419;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=SH04_RS22145;old_locus_tag=SH04_22155 NZ_CP010443.1 Protein Homology CDS 4473217 4473912 . + 0 ID=cds4311;Parent=gene4419;Dbxref=Genbank:WP_000893142.1;Name=WP_000893142.1;Note=catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate%3B links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source;gbkey=CDS;gene=araD;product=L-ribulose-5-phosphate 4-epimerase SgbE;protein_id=WP_000893142.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4474259 4474999 . - . ID=gene4420;Name=SH04_RS22150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22150;old_locus_tag=SH04_22160 NZ_CP010443.1 Protein Homology CDS 4474259 4474999 . - 0 ID=cds4312;Parent=gene4420;Dbxref=Genbank:WP_000906819.1;Name=WP_000906819.1;gbkey=CDS;product=outer membrane protein;protein_id=WP_000906819.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4475123 4476097 . + . ID=gene4421;Name=SH04_RS22155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22155;old_locus_tag=SH04_22165 NZ_CP010443.1 Protein Homology CDS 4475123 4476097 . + 0 ID=cds4313;Parent=gene4421;Dbxref=Genbank:WP_000164036.1;Name=WP_000164036.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000164036.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4476094 4477230 . - . ID=gene4422;Name=SH04_RS22160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22160;old_locus_tag=SH04_22170 NZ_CP010443.1 Protein Homology CDS 4476094 4477230 . - 0 ID=cds4314;Parent=gene4422;Dbxref=Genbank:WP_000364884.1;Name=WP_000364884.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000364884.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4477236 4477559 . - . ID=gene4423;Name=SH04_RS22165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22165;old_locus_tag=SH04_22175 NZ_CP010443.1 Protein Homology CDS 4477236 4477559 . - 0 ID=cds4315;Parent=gene4423;Dbxref=Genbank:WP_000478195.1;Name=WP_000478195.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000478195.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4477673 4477885 . + . ID=gene4424;Name=SH04_RS22170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22170 NZ_CP010443.1 Protein Homology CDS 4477673 4477885 . + 0 ID=cds4316;Parent=gene4424;Dbxref=Genbank:WP_000332751.1;Name=WP_000332751.1;gbkey=CDS;product=membrane protein;protein_id=WP_000332751.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4478104 4479642 . - . ID=gene4425;Name=SH04_RS22175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22175;old_locus_tag=SH04_22185 NZ_CP010443.1 Protein Homology CDS 4478104 4479642 . - 0 ID=cds4317;Parent=gene4425;Dbxref=Genbank:WP_000183980.1;Name=WP_000183980.1;Note=catalyzes the oxidation of acetaldehyde%2C benzaldehyde%2C propionaldehyde and other aldehydes;gbkey=CDS;product=aldehyde dehydrogenase B;protein_id=WP_000183980.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4479807 4480958 . - . ID=gene4426;Name=SH04_RS22180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22180;old_locus_tag=SH04_22190 NZ_CP010443.1 Protein Homology CDS 4479807 4480958 . - 0 ID=cds4318;Parent=gene4426;Dbxref=Genbank:WP_000741518.1;Name=WP_000741518.1;gbkey=CDS;product=alcohol dehydrogenase;protein_id=WP_000741518.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4481148 4482992 . - . ID=gene4427;Name=SH04_RS22185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22185;old_locus_tag=SH04_22195 NZ_CP010443.1 Protein Homology CDS 4481148 4482992 . - 0 ID=cds4319;Parent=gene4427;Dbxref=Genbank:WP_000582468.1;Name=WP_000582468.1;gbkey=CDS;product=selenocysteine-specific translation elongation factor;protein_id=WP_000582468.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4482989 4484380 . - . ID=gene4428;Name=SH04_RS22190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22190;old_locus_tag=SH04_22200 NZ_CP010443.1 Protein Homology CDS 4482989 4484380 . - 0 ID=cds4320;Parent=gene4428;Dbxref=Genbank:WP_000206275.1;Name=WP_000206275.1;Note=catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis;gbkey=CDS;product=L-seryl-tRNA(Sec) selenium transferase;protein_id=WP_000206275.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4484478 4485086 . - . ID=gene4429;Name=SH04_RS22195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22195;old_locus_tag=SH04_22205 NZ_CP010443.1 Protein Homology CDS 4484478 4485086 . - 0 ID=cds4321;Parent=gene4429;Dbxref=Genbank:WP_000779792.1;Name=WP_000779792.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_000779792.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4485231 4489026 . + . ID=id233;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4485314 4489447 . + . ID=gene4430;Name=SH04_RS22200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22200;old_locus_tag=SH04_22210 NZ_CP010443.1 Protein Homology CDS 4485314 4489447 . + 0 ID=cds4322;Parent=gene4430;Dbxref=Genbank:WP_000015300.1;Name=WP_000015300.1;gbkey=CDS;product=RHS element protein RhsA;protein_id=WP_000015300.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4489416 4489814 . + . ID=id234;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4489468 4490310 . + . ID=gene4431;Name=SH04_RS22205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22205;old_locus_tag=SH04_22215 NZ_CP010443.1 Protein Homology CDS 4489468 4490310 . + 0 ID=cds4323;Parent=gene4431;Dbxref=Genbank:WP_000072850.1;Name=WP_000072850.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000072850.1;transl_table=11 NZ_CP010443.1 RefSeq repeat_region 4490351 4490782 . + . ID=id235;gbkey=repeat_region NZ_CP010443.1 RefSeq gene 4490358 4491053 . + . ID=gene4432;Name=SH04_RS22210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22210;old_locus_tag=SH04_22220 NZ_CP010443.1 Protein Homology CDS 4490358 4491053 . + 0 ID=cds4324;Parent=gene4432;Dbxref=Genbank:WP_001350556.1;Name=WP_001350556.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001350556.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4491308 4491769 . + . ID=gene4433;Name=SH04_RS22215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22215;old_locus_tag=SH04_22225 NZ_CP010443.1 Protein Homology CDS 4491308 4491769 . + 0 ID=cds4325;Parent=gene4433;Dbxref=Genbank:WP_000642478.1;Name=WP_000642478.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000642478.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4492476 4492914 . + . ID=gene4434;Name=SH04_RS22220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS22220;pseudo=true NZ_CP010443.1 Protein Homology CDS 4492476 4492914 . + 0 ID=cds4326;Parent=gene4434;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 4493374 4494510 . - . ID=gene4435;Name=SH04_RS22225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22225;old_locus_tag=SH04_22235 NZ_CP010443.1 Protein Homology CDS 4493374 4494510 . - 0 ID=cds4327;Parent=gene4435;Dbxref=Genbank:WP_000364939.1;Name=WP_000364939.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000364939.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4494513 4494875 . - . ID=gene4436;Name=SH04_RS22230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22230;old_locus_tag=SH04_22240 NZ_CP010443.1 Protein Homology CDS 4494513 4494875 . - 0 ID=cds4328;Parent=gene4436;Dbxref=Genbank:WP_000479624.1;Name=WP_000479624.1;gbkey=CDS;product=DUF3302 domain-containing protein;protein_id=WP_000479624.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4495412 4497323 . + . ID=gene4437;Name=SH04_RS22235;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SH04_RS22235;pseudo=true NZ_CP010443.1 Protein Homology CDS 4495412 4497323 . + 0 ID=cds4329;Parent=gene4437;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B subunit IIC forms the translocation channel and contains the specific substrate-binding site%3B subunit IIA is phosphorylated and transfers the phosphoryl group to the IIB subunit%3B subunit IIB transfers the phosphoryl group to the substrate;exception=annotated by transcript or proteomic data;gbkey=CDS;product=PTS mannitol transporter subunit IICBA;pseudo=true;transl_table=11 NZ_CP010443.1 RefSeq gene 4497553 4498701 . + . ID=gene4438;Name=SH04_RS22240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22240;old_locus_tag=SH04_22250 NZ_CP010443.1 Protein Homology CDS 4497553 4498701 . + 0 ID=cds4330;Parent=gene4438;Dbxref=Genbank:WP_000645439.1;Name=WP_000645439.1;gbkey=CDS;product=mannitol-1-phosphate 5-dehydrogenase;protein_id=WP_000645439.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4498698 4499288 . + . ID=gene4439;Name=SH04_RS22245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22245;old_locus_tag=SH04_22255 NZ_CP010443.1 Protein Homology CDS 4498698 4499288 . + 0 ID=cds4331;Parent=gene4439;Dbxref=Genbank:WP_032082767.1;Name=WP_032082767.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032082767.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4499300 4499509 . - . ID=gene4440;Name=SH04_RS22250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22250;old_locus_tag=SH04_22260 NZ_CP010443.1 Protein Homology CDS 4499300 4499509 . - 0 ID=cds4332;Parent=gene4440;Dbxref=Genbank:WP_000517100.1;Name=WP_000517100.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000517100.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4499794 4500156 . + . ID=gene4441;Name=SH04_RS22255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22255;old_locus_tag=SH04_22265 NZ_CP010443.1 Protein Homology CDS 4499794 4500156 . + 0 ID=cds4333;Parent=gene4441;Dbxref=Genbank:WP_000665680.1;Name=WP_000665680.1;gbkey=CDS;product=DUF2810 domain-containing protein;protein_id=WP_000665680.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4500528 4502183 . + . ID=gene4442;Name=SH04_RS22260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22260;old_locus_tag=SH04_22270 NZ_CP010443.1 Protein Homology CDS 4500528 4502183 . + 0 ID=cds4334;Parent=gene4442;Dbxref=Genbank:WP_001295233.1;Name=WP_001295233.1;gbkey=CDS;product=L-lactate permease;protein_id=WP_001295233.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4502183 4502959 . + . ID=gene4443;Name=SH04_RS22265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22265;old_locus_tag=SH04_22275 NZ_CP010443.1 Protein Homology CDS 4502183 4502959 . + 0 ID=cds4335;Parent=gene4443;Dbxref=Genbank:WP_000636500.1;Name=WP_000636500.1;Note=represses the lctPRD operon;gbkey=CDS;product=dual role activator/repressor for lldPRD operon;protein_id=WP_000636500.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4502956 4504146 . + . ID=gene4444;Name=lldD;gbkey=Gene;gene=lldD;gene_biotype=protein_coding;locus_tag=SH04_RS22270;old_locus_tag=SH04_22280 NZ_CP010443.1 Protein Homology CDS 4502956 4504146 . + 0 ID=cds4336;Parent=gene4444;Dbxref=Genbank:WP_000586962.1;Name=WP_000586962.1;Note=flavin mononucleotide-dependent dehydrogenase%3B functions in aerobic respiration and also has a role in anaerobic nitrate respiration;gbkey=CDS;gene=lldD;product=lactate dehydrogenase;protein_id=WP_000586962.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4504344 4504817 . + . ID=gene4445;Name=SH04_RS22275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22275;old_locus_tag=SH04_22285 NZ_CP010443.1 Protein Homology CDS 4504344 4504817 . + 0 ID=cds4337;Parent=gene4445;Dbxref=Genbank:WP_000932347.1;Name=WP_000932347.1;Note=member of the SPOUT superfamily of RNA methyltransferases;gbkey=CDS;product=tRNA (cytidine(34)-2'-O)-methyltransferase;protein_id=WP_000932347.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4504870 4505691 . - . ID=gene4446;Name=cysE;gbkey=Gene;gene=cysE;gene_biotype=protein_coding;locus_tag=SH04_RS22280;old_locus_tag=SH04_22290 NZ_CP010443.1 Protein Homology CDS 4504870 4505691 . - 0 ID=cds4338;Parent=gene4446;Dbxref=Genbank:WP_001277561.1;Name=WP_001277561.1;Note=catalyzes the O-acetylation of serine;gbkey=CDS;gene=cysE;product=serine acetyltransferase;protein_id=WP_001277561.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4505771 4506790 . - . ID=gene4447;Name=SH04_RS22285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22285;old_locus_tag=SH04_22295 NZ_CP010443.1 Protein Homology CDS 4505771 4506790 . - 0 ID=cds4339;Parent=gene4447;Dbxref=Genbank:WP_001076194.1;Name=WP_001076194.1;gbkey=CDS;product=glycerol-3-phosphate dehydrogenase [NAD(P)+];protein_id=WP_001076194.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4506790 4507257 . - . ID=gene4448;Name=SH04_RS22290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22290;old_locus_tag=SH04_22300 NZ_CP010443.1 Protein Homology CDS 4506790 4507257 . - 0 ID=cds4340;Parent=gene4448;Dbxref=Genbank:WP_038432697.1;Name=WP_038432697.1;Note=molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm%3B in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA;gbkey=CDS;product=preprotein translocase subunit SecB;protein_id=WP_038432697.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4507320 4507571 . - . ID=gene4449;Name=SH04_RS22295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22295;old_locus_tag=SH04_22305 NZ_CP010443.1 Protein Homology CDS 4507320 4507571 . - 0 ID=cds4341;Parent=gene4449;Dbxref=Genbank:WP_000024392.1;Name=WP_000024392.1;gbkey=CDS;product=glutaredoxin;protein_id=WP_000024392.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4507713 4508144 . - . ID=gene4450;Name=SH04_RS22300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22300;old_locus_tag=SH04_22310 NZ_CP010443.1 Protein Homology CDS 4507713 4508144 . - 0 ID=cds4342;Parent=gene4450;Dbxref=Genbank:WP_001156181.1;Name=WP_001156181.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001156181.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4508172 4508282 . - . ID=gene4451;Name=SH04_RS22305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22305;old_locus_tag=SH04_22315 NZ_CP010443.1 Protein Homology CDS 4508172 4508282 . - 0 ID=cds4343;Parent=gene4451;Dbxref=Genbank:WP_001113042.1;Name=WP_001113042.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001113042.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4508389 4509933 . + . ID=gene4452;Name=SH04_RS22310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22310;old_locus_tag=SH04_22320 NZ_CP010443.1 Protein Homology CDS 4508389 4509933 . + 0 ID=cds4344;Parent=gene4452;Dbxref=Genbank:WP_001350558.1;Name=WP_001350558.1;Note=catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate;gbkey=CDS;product=2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase;protein_id=WP_001350558.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4509943 4511226 . + . ID=gene4453;Name=SH04_RS22315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22315;old_locus_tag=SH04_22325 NZ_CP010443.1 Protein Homology CDS 4509943 4511226 . + 0 ID=cds4345;Parent=gene4453;Dbxref=Genbank:WP_001214147.1;Name=WP_001214147.1;gbkey=CDS;product=peptidase M37;protein_id=WP_001214147.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4511230 4512189 . + . ID=gene4454;Name=SH04_RS22320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22320;old_locus_tag=SH04_22330 NZ_CP010443.1 Protein Homology CDS 4511230 4512189 . + 0 ID=cds4346;Parent=gene4454;Dbxref=Genbank:WP_000483847.1;Name=WP_000483847.1;gbkey=CDS;product=polysaccharide deacetylase;protein_id=WP_000483847.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4512176 4513210 . - . ID=gene4455;Name=SH04_RS22325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22325;old_locus_tag=SH04_22335 NZ_CP010443.1 Protein Homology CDS 4512176 4513210 . - 0 ID=cds4347;Parent=gene4455;Dbxref=Genbank:WP_000982115.1;Name=WP_000982115.1;gbkey=CDS;product=LPS(HepIII)-glucuronic acid glycosyltransferase;protein_id=WP_000982115.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4513449 4514474 . - . ID=gene4456;Name=tdh;gbkey=Gene;gene=tdh;gene_biotype=protein_coding;locus_tag=SH04_RS22330;old_locus_tag=SH04_22340 NZ_CP010443.1 Protein Homology CDS 4513449 4514474 . - 0 ID=cds4348;Parent=gene4456;Dbxref=Genbank:WP_000646007.1;Name=WP_000646007.1;Note=converts threonine and NAD to 1%2C2-amino-3-oxobutanoate and NADH%3B functions in threonine catabolism;gbkey=CDS;gene=tdh;product=l-threonine 3-dehydrogenase;protein_id=WP_000646007.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4514484 4515680 . - . ID=gene4457;Name=SH04_RS22335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22335;old_locus_tag=SH04_22345 NZ_CP010443.1 Protein Homology CDS 4514484 4515680 . - 0 ID=cds4349;Parent=gene4457;Dbxref=Genbank:WP_001213834.1;Name=WP_001213834.1;Note=catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine;gbkey=CDS;product=2-amino-3-ketobutyrate CoA ligase;protein_id=WP_001213834.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4515955 4516812 . - . ID=gene4458;Name=SH04_RS22340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22340;old_locus_tag=SH04_22350 NZ_CP010443.1 Protein Homology CDS 4515955 4516812 . - 0 ID=cds4350;Parent=gene4458;Dbxref=Genbank:WP_000842820.1;Name=WP_000842820.1;gbkey=CDS;product=protein HtrL;protein_id=WP_000842820.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4517116 4518048 . + . ID=gene4459;Name=rfaD;gbkey=Gene;gene=rfaD;gene_biotype=protein_coding;locus_tag=SH04_RS22345;old_locus_tag=SH04_22355 NZ_CP010443.1 Protein Homology CDS 4517116 4518048 . + 0 ID=cds4351;Parent=gene4459;Dbxref=Genbank:WP_000587764.1;Name=WP_000587764.1;Note=catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose;gbkey=CDS;gene=rfaD;product=ADP-L-glycero-D-manno-heptose-6-epimerase;protein_id=WP_000587764.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4518058 4519104 . + . ID=gene4460;Name=SH04_RS22350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22350;old_locus_tag=SH04_22360 NZ_CP010443.1 Protein Homology CDS 4518058 4519104 . + 0 ID=cds4352;Parent=gene4460;Dbxref=Genbank:WP_000699219.1;Name=WP_000699219.1;Note=catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core;gbkey=CDS;product=ADP-heptose--LPS heptosyltransferase 2;protein_id=WP_000699219.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4519108 4520067 . + . ID=gene4461;Name=SH04_RS22355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22355;old_locus_tag=SH04_22365 NZ_CP010443.1 Protein Homology CDS 4519108 4520067 . + 0 ID=cds4353;Parent=gene4461;Dbxref=Genbank:WP_001264584.1;Name=WP_001264584.1;gbkey=CDS;product=LPS heptosyltransferase 1;protein_id=WP_001264584.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4520077 4521336 . + . ID=gene4462;Name=SH04_RS22360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22360;old_locus_tag=SH04_22370 NZ_CP010443.1 Protein Homology CDS 4520077 4521336 . + 0 ID=cds4354;Parent=gene4462;Dbxref=Genbank:WP_001395405.1;Name=WP_001395405.1;gbkey=CDS;product=O-antigen ligase;protein_id=WP_001395405.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4521368 4522441 . - . ID=gene4463;Name=SH04_RS22365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22365;old_locus_tag=SH04_22375 NZ_CP010443.1 Protein Homology CDS 4521368 4522441 . - 0 ID=cds4355;Parent=gene4463;Dbxref=Genbank:WP_001236433.1;Name=WP_001236433.1;gbkey=CDS;product=LPS 1%2C2-N-acetylglucosaminetransferase;protein_id=WP_001236433.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4522474 4523325 . - . ID=gene4464;Name=SH04_RS22370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22370;old_locus_tag=SH04_22380 NZ_CP010443.1 Protein Homology CDS 4522474 4523325 . - 0 ID=cds4356;Parent=gene4464;Dbxref=Genbank:WP_000790279.1;Name=WP_000790279.1;gbkey=CDS;product=3-deoxy-D-manno-oct-2-ulosonate III transferase WaaZ;protein_id=WP_000790279.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4523396 4524094 . - . ID=gene4465;Name=SH04_RS22375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22375;old_locus_tag=SH04_22385 NZ_CP010443.1 Protein Homology CDS 4523396 4524094 . - 0 ID=cds4357;Parent=gene4465;Dbxref=Genbank:WP_038432700.1;Name=WP_038432700.1;Note=catalyzes the phosphorylation of heptose(II) of the outer membrane lipopolysaccharide core;gbkey=CDS;product=LPS core heptose(II) kinase RfaY;protein_id=WP_038432700.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4524112 4525128 . - . ID=gene4466;Name=SH04_RS22380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22380;old_locus_tag=SH04_22390 NZ_CP010443.1 Protein Homology CDS 4524112 4525128 . - 0 ID=cds4358;Parent=gene4466;Dbxref=Genbank:WP_000376841.1;Name=WP_000376841.1;gbkey=CDS;product=LPS 1%2C2-glucosyltransferase;protein_id=WP_000376841.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4525168 4526187 . - . ID=gene4467;Name=SH04_RS22385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22385;old_locus_tag=SH04_22395 NZ_CP010443.1 Protein Homology CDS 4525168 4526187 . - 0 ID=cds4359;Parent=gene4467;Dbxref=Genbank:WP_001188013.1;Name=WP_001188013.1;gbkey=CDS;product=LPS 1%2C3-galactosyltransferase;protein_id=WP_001188013.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4526187 4527266 . - . ID=gene4468;Name=SH04_RS22390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22390;old_locus_tag=SH04_22400 NZ_CP010443.1 Protein Homology CDS 4526187 4527266 . - 0 ID=cds4360;Parent=gene4468;Dbxref=Genbank:WP_000683964.1;Name=WP_000683964.1;gbkey=CDS;product=LPS 1%2C6-galactosyltransferase;protein_id=WP_000683964.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4527310 4528245 . - . ID=gene4469;Name=SH04_RS22395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22395;old_locus_tag=SH04_22405 NZ_CP010443.1 Protein Homology CDS 4527310 4528245 . - 0 ID=cds4361;Parent=gene4469;Dbxref=Genbank:WP_000158225.1;Name=WP_000158225.1;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_000158225.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4528282 4529079 . - . ID=gene4470;Name=SH04_RS22400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22400;old_locus_tag=SH04_22410 NZ_CP010443.1 Protein Homology CDS 4528282 4529079 . - 0 ID=cds4362;Parent=gene4470;Dbxref=Genbank:WP_000229840.1;Name=WP_000229840.1;Note=catalyzes the phosphorylation of heptose I in the lipopolysaccharide core;gbkey=CDS;product=LPS core heptose(I) kinase RfaP;protein_id=WP_000229840.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4529072 4530196 . - . ID=gene4471;Name=SH04_RS22405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22405;old_locus_tag=SH04_22415 NZ_CP010443.1 Protein Homology CDS 4529072 4530196 . - 0 ID=cds4363;Parent=gene4471;Dbxref=Genbank:WP_000634283.1;Name=WP_000634283.1;Note=catalyzes the addition of the first glucose residue to the LPS core;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_000634283.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4530193 4531227 . - . ID=gene4472;Name=SH04_RS22410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22410;old_locus_tag=SH04_22420 NZ_CP010443.1 Protein Homology CDS 4530193 4531227 . - 0 ID=cds4364;Parent=gene4472;Dbxref=Genbank:WP_001268851.1;Name=WP_001268851.1;Note=catalyzes the transfer of heptose(III) to heptose(II) in the lipopolysaccharide inner core;gbkey=CDS;product=LPS core heptosyltransferase RfaQ;protein_id=WP_001268851.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4531669 4532946 . + . ID=gene4473;Name=SH04_RS22415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22415;old_locus_tag=SH04_22425 NZ_CP010443.1 Protein Homology CDS 4531669 4532946 . + 0 ID=cds4365;Parent=gene4473;Dbxref=Genbank:WP_000891564.1;Name=WP_000891564.1;Note=catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A;gbkey=CDS;product=3-deoxy-D-manno-octulosonic acid transferase;protein_id=WP_000891564.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4532954 4533433 . + . ID=gene4474;Name=coaD;gbkey=Gene;gene=coaD;gene_biotype=protein_coding;locus_tag=SH04_RS22420;old_locus_tag=SH04_22430 NZ_CP010443.1 Protein Homology CDS 4532954 4533433 . + 0 ID=cds4366;Parent=gene4474;Dbxref=Genbank:WP_001171866.1;Name=WP_001171866.1;Note=Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA;gbkey=CDS;gene=coaD;product=phosphopantetheine adenylyltransferase;protein_id=WP_001171866.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4533472 4534281 . - . ID=gene4475;Name=SH04_RS22425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22425;old_locus_tag=SH04_22435 NZ_CP010443.1 Protein Homology CDS 4533472 4534281 . - 0 ID=cds4367;Parent=gene4475;Dbxref=Genbank:WP_001114543.1;Name=WP_001114543.1;Note=Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases;gbkey=CDS;product=formamidopyrimidine-DNA glycosylase;protein_id=WP_001114543.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4534379 4534546 . - . ID=gene4476;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=SH04_RS22430;old_locus_tag=SH04_22440 NZ_CP010443.1 Protein Homology CDS 4534379 4534546 . - 0 ID=cds4368;Parent=gene4476;Dbxref=Genbank:WP_001051798.1;Name=WP_001051798.1;Note=in Escherichia coli BM108%2C a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function%3B there are paralogous genes in several bacterial genomes%2C and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31%3B the proteins in this group lack the CXXC motif;gbkey=CDS;gene=rpmG;product=50S ribosomal protein L33;protein_id=WP_001051798.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4534567 4534803 . - . ID=gene4477;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=SH04_RS22435;old_locus_tag=SH04_22445 NZ_CP010443.1 Protein Homology CDS 4534567 4534803 . - 0 ID=cds4369;Parent=gene4477;Dbxref=Genbank:WP_000091955.1;Name=WP_000091955.1;Note=required for 70S ribosome assembly;gbkey=CDS;gene=rpmB;product=50S ribosomal protein L28;protein_id=WP_000091955.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4535020 4535688 . - . ID=gene4478;Name=SH04_RS22440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22440;old_locus_tag=SH04_22450 NZ_CP010443.1 Protein Homology CDS 4535020 4535688 . - 0 ID=cds4370;Parent=gene4478;Dbxref=Genbank:WP_001350561.1;Name=WP_001350561.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001350561.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4535860 4537080 . + . ID=gene4479;Name=SH04_RS22445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22445;old_locus_tag=SH04_22455 NZ_CP010443.1 Protein Homology CDS 4535860 4537080 . + 0 ID=cds4371;Parent=gene4479;Dbxref=Genbank:WP_000050139.1;Name=WP_000050139.1;Note=catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine%2C which is then decarboxylated to form 4'-phosphopantotheine;gbkey=CDS;product=CoA biosynthesis bifunctional protein CoaBC;protein_id=WP_000050139.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4537058 4537516 . + . ID=gene4480;Name=SH04_RS22450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22450;old_locus_tag=SH04_22460 NZ_CP010443.1 Protein Homology CDS 4537058 4537516 . + 0 ID=cds4372;Parent=gene4480;Dbxref=Genbank:WP_000976073.1;Name=WP_000976073.1;Note=catalyzes the formation of dUMP from dUTP;gbkey=CDS;product=deoxyuridine 5'-triphosphate nucleotidohydrolase;protein_id=WP_000976073.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4537623 4538219 . + . ID=gene4481;Name=slmA;gbkey=Gene;gene=slmA;gene_biotype=protein_coding;gene_synonym=ttk;locus_tag=SH04_RS22455;old_locus_tag=SH04_22465 NZ_CP010443.1 Protein Homology CDS 4537623 4538219 . + 0 ID=cds4373;Parent=gene4481;Dbxref=Genbank:WP_000818601.1;Name=WP_000818601.1;Note=FtsZ binding protein%3B synthetically lethal with a defect in the Min system%3B this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly;gbkey=CDS;gene=slmA;product=nucleoid occlusion factor SlmA;protein_id=WP_000818601.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4538256 4538897 . - . ID=gene4482;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=protein_coding;locus_tag=SH04_RS22460;old_locus_tag=SH04_22470 NZ_CP010443.1 Protein Homology CDS 4538256 4538897 . - 0 ID=cds4374;Parent=gene4482;Dbxref=Genbank:WP_000806177.1;Name=WP_000806177.1;Note=involved in fifth step of pyrimidine biosynthesis%3B converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate;gbkey=CDS;gene=pyrE;product=orotate phosphoribosyltransferase;protein_id=WP_000806177.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4538963 4539679 . - . ID=gene4483;Name=rph;gbkey=Gene;gene=rph;gene_biotype=protein_coding;locus_tag=SH04_RS22465;old_locus_tag=SH04_22475 NZ_CP010443.1 Protein Homology CDS 4538963 4539679 . - 0 ID=cds4375;Parent=gene4483;Dbxref=Genbank:WP_001247096.1;Name=WP_001247096.1;Note=RNase PH%3B tRNA nucleotidyltransferase%3B forms hexamers in Bacillus subtilis%3B phosphoroltic 3'-5' exoribonuclease%3B involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs;gbkey=CDS;gene=rph;product=ribonuclease PH;protein_id=WP_001247096.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4539806 4540669 . + . ID=gene4484;Name=SH04_RS22470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22470;old_locus_tag=SH04_22480 NZ_CP010443.1 Protein Homology CDS 4539806 4540669 . + 0 ID=cds4376;Parent=gene4484;Dbxref=Genbank:WP_000621340.1;Name=WP_000621340.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000621340.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4540890 4541714 . + . ID=gene4485;Name=dinD;gbkey=Gene;gene=dinD;gene_biotype=protein_coding;locus_tag=SH04_RS22475;old_locus_tag=SH04_22485 NZ_CP010443.1 Protein Homology CDS 4540890 4541714 . + 0 ID=cds4377;Parent=gene4485;Dbxref=Genbank:WP_001350563.1;Name=WP_001350563.1;gbkey=CDS;gene=dinD;product=DNA-damage-inducible protein D;protein_id=WP_001350563.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4542004 4542621 . + . ID=gene4486;Name=SH04_RS22480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22480;old_locus_tag=SH04_22490 NZ_CP010443.1 Protein Homology CDS 4542004 4542621 . + 0 ID=cds4378;Parent=gene4486;Dbxref=Genbank:WP_000924289.1;Name=WP_000924289.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000924289.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4542618 4544300 . - . ID=gene4487;Name=ligB;gbkey=Gene;gene=ligB;gene_biotype=protein_coding;gene_synonym=yicF;locus_tag=SH04_RS22485;old_locus_tag=SH04_22495 NZ_CP010443.1 Protein Homology CDS 4542618 4544300 . - 0 ID=cds4379;Parent=gene4487;Dbxref=Genbank:WP_000870036.1;Name=WP_000870036.1;Note=this ligase is similar to LigA but it lacks the C-terminal BRCT domain%3B catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+;gbkey=CDS;gene=ligB;product=DNA ligase B;protein_id=WP_000870036.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4544558 4545181 . + . ID=gene4488;Name=gmk;gbkey=Gene;gene=gmk;gene_biotype=protein_coding;locus_tag=SH04_RS22490;old_locus_tag=SH04_22500 NZ_CP010443.1 Protein Homology CDS 4544558 4545181 . + 0 ID=cds4380;Parent=gene4488;Dbxref=Genbank:WP_001295237.1;Name=WP_001295237.1;Note=Essential for recycling GMP and indirectly%2C cGMP;gbkey=CDS;gene=gmk;product=guanylate kinase;protein_id=WP_001295237.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4545236 4545511 . + . ID=gene4489;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=SH04_RS22495;old_locus_tag=SH04_22505 NZ_CP010443.1 Protein Homology CDS 4545236 4545511 . + 0 ID=cds4381;Parent=gene4489;Dbxref=Genbank:WP_000135058.1;Name=WP_000135058.1;Note=Promotes RNA polymerase assembly%3B latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits;gbkey=CDS;gene=rpoZ;product=DNA-directed RNA polymerase subunit omega;protein_id=WP_000135058.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4545530 4547638 . + . ID=gene4490;Name=SH04_RS22500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22500;old_locus_tag=SH04_22510 NZ_CP010443.1 Protein Homology CDS 4545530 4547638 . + 0 ID=cds4382;Parent=gene4490;Dbxref=Genbank:WP_000280488.1;Name=WP_000280488.1;gbkey=CDS;product=bifunctional (p)ppGpp synthetase II/ guanosine-3'%2C5'-bis pyrophosphate 3'-pyrophosphohydrolase;protein_id=WP_000280488.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4547645 4548334 . + . ID=gene4491;Name=SH04_RS22505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22505;old_locus_tag=SH04_22515 NZ_CP010443.1 Protein Homology CDS 4547645 4548334 . + 0 ID=cds4383;Parent=gene4491;Dbxref=Genbank:WP_001070177.1;Name=WP_001070177.1;Note=specifically modifies tRNA at position G18;gbkey=CDS;product=tRNA (guanosine(18)-2'-O)-methyltransferase;protein_id=WP_001070177.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4548340 4550421 . + . ID=gene4492;Name=SH04_RS22510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22510;old_locus_tag=SH04_22520 NZ_CP010443.1 Protein Homology CDS 4548340 4550421 . + 0 ID=cds4384;Parent=gene4492;Dbxref=Genbank:WP_000678419.1;Name=WP_000678419.1;Note=catalyzes branch migration in Holliday junction intermediates;gbkey=CDS;product=ATP-dependent DNA helicase RecG;protein_id=WP_000678419.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4550590 4551795 . - . ID=gene4493;Name=SH04_RS22515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22515;old_locus_tag=SH04_22525 NZ_CP010443.1 Protein Homology CDS 4550590 4551795 . - 0 ID=cds4385;Parent=gene4493;Dbxref=Genbank:WP_000468833.1;Name=WP_000468833.1;Note=is involved with the sodium-dependent uptake of glutamate;gbkey=CDS;product=sodium/glutamate symport carrier protein;protein_id=WP_000468833.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4552075 4553466 . + . ID=gene4494;Name=SH04_RS22520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22520;old_locus_tag=SH04_22530 NZ_CP010443.1 Protein Homology CDS 4552075 4553466 . + 0 ID=cds4386;Parent=gene4494;Dbxref=Genbank:WP_001295238.1;Name=WP_001295238.1;Note=high-affinity transporter for xanthine;gbkey=CDS;product=xanthine permease XanP;protein_id=WP_001295238.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4553587 4555296 . + . ID=gene4495;Name=SH04_RS22525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22525;old_locus_tag=SH04_22535 NZ_CP010443.1 Protein Homology CDS 4553587 4555296 . + 0 ID=cds4387;Parent=gene4495;Dbxref=Genbank:WP_001300954.1;Name=WP_001300954.1;gbkey=CDS;product=AsmA family protein;protein_id=WP_001300954.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4555349 4557667 . - . ID=gene4496;Name=SH04_RS22530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22530;old_locus_tag=SH04_22540 NZ_CP010443.1 Protein Homology CDS 4555349 4557667 . - 0 ID=cds4388;Parent=gene4496;Dbxref=Genbank:WP_000702898.1;Name=WP_000702898.1;Note=catalyzes the transfer of alpha-xylosyl residue;gbkey=CDS;product=alpha-xylosidase;protein_id=WP_000702898.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4557677 4559059 . - . ID=gene4497;Name=SH04_RS22535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22535;old_locus_tag=SH04_22545 NZ_CP010443.1 Protein Homology CDS 4557677 4559059 . - 0 ID=cds4389;Parent=gene4497;Dbxref=Genbank:WP_000834439.1;Name=WP_000834439.1;Note=may be involved in the transport of galactosides-pentoses-hexuronides;gbkey=CDS;product=inner membrane symporter YicJ;protein_id=WP_000834439.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4559352 4559446 . + . ID=gene4498;Name=SH04_RS22540;gbkey=Gene;gene_biotype=tRNA;locus_tag=SH04_RS22540;old_locus_tag=SH04_22550 NZ_CP010443.1 tRNAscan-SE tRNA 4559352 4559446 . + . ID=rna108;Parent=gene4498;anticodon=(pos:4559386..4559388);gbkey=tRNA;product=tRNA-Sec NZ_CP010443.1 tRNAscan-SE exon 4559352 4559446 . + . ID=id236;Parent=rna108;anticodon=(pos:4559386..4559388);gbkey=tRNA;product=tRNA-Sec NZ_CP010443.1 RefSeq gene 4559555 4559701 . + . ID=gene4499;Name=SH04_RS22545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22545;old_locus_tag=SH04_22555 NZ_CP010443.1 Protein Homology CDS 4559555 4559701 . + 0 ID=cds4390;Parent=gene4499;Dbxref=Genbank:WP_001315909.1;Name=WP_001315909.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001315909.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4560083 4561267 . + . ID=gene4500;Name=SH04_RS22550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22550;old_locus_tag=SH04_22560 NZ_CP010443.1 Protein Homology CDS 4560083 4561267 . + 0 ID=cds4391;Parent=gene4500;Dbxref=Genbank:WP_001172878.1;Name=WP_001172878.1;gbkey=CDS;product=sugar efflux transporter C;protein_id=WP_001172878.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4561378 4562301 . + . ID=gene4501;Name=SH04_RS22555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22555;old_locus_tag=SH04_22565 NZ_CP010443.1 Protein Homology CDS 4561378 4562301 . + 0 ID=cds4392;Parent=gene4501;Dbxref=Genbank:WP_000535961.1;Name=WP_000535961.1;gbkey=CDS;product=transporter;protein_id=WP_000535961.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4562305 4563123 . - . ID=gene4502;Name=SH04_RS22560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22560;old_locus_tag=SH04_22570 NZ_CP010443.1 Protein Homology CDS 4562305 4563123 . - 0 ID=cds4393;Parent=gene4502;Dbxref=Genbank:WP_000779426.1;Name=WP_000779426.1;gbkey=CDS;product=lipoprotein 28;protein_id=WP_000779426.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4563221 4563340 . + . ID=gene4503;Name=SH04_RS22565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22565;old_locus_tag=SH04_22575 NZ_CP010443.1 Protein Homology CDS 4563221 4563340 . + 0 ID=cds4394;Parent=gene4503;Dbxref=Genbank:WP_000456043.1;Name=WP_000456043.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000456043.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4563345 4563638 . + . ID=gene4504;Name=SH04_RS22570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22570;old_locus_tag=SH04_22580 NZ_CP010443.1 Protein Homology CDS 4563345 4563638 . + 0 ID=cds4395;Parent=gene4504;Dbxref=Genbank:WP_000805509.1;Name=WP_000805509.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000805509.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4563679 4564869 . - . ID=gene4505;Name=nepI;gbkey=Gene;gene=nepI;gene_biotype=protein_coding;gene_synonym=yicM;locus_tag=SH04_RS22575;old_locus_tag=SH04_22585 NZ_CP010443.1 Protein Homology CDS 4563679 4564869 . - 0 ID=cds4396;Parent=gene4505;Dbxref=Genbank:WP_001288549.1;Name=WP_001288549.1;Note=experimental results in Escherichia coli suggest that this gene encodes an inosine export protein%3B member of major facilitator superfamily%3B MFS;gbkey=CDS;gene=nepI;product=purine ribonucleoside efflux pump NepI;protein_id=WP_001288549.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4565080 4565532 . - . ID=gene4506;Name=SH04_RS22580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22580;old_locus_tag=SH04_22590 NZ_CP010443.1 Protein Homology CDS 4565080 4565532 . - 0 ID=cds4397;Parent=gene4506;Dbxref=Genbank:WP_001295241.1;Name=WP_001295241.1;gbkey=CDS;product=DUF1198 domain-containing protein;protein_id=WP_001295241.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4565585 4566997 . - . ID=gene4507;Name=SH04_RS22585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22585;old_locus_tag=SH04_22595 NZ_CP010443.1 Protein Homology CDS 4565585 4566997 . - 0 ID=cds4398;Parent=gene4507;Dbxref=Genbank:WP_000584172.1;Name=WP_000584172.1;Note=involved in the transport or adenine;gbkey=CDS;product=adenine permease;protein_id=WP_000584172.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4567094 4568860 . + . ID=gene4508;Name=SH04_RS22590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22590;old_locus_tag=SH04_22600 NZ_CP010443.1 Protein Homology CDS 4567094 4568860 . + 0 ID=cds4399;Parent=gene4508;Dbxref=Genbank:WP_001065718.1;Name=WP_001065718.1;Note=catalyzes the formation of hypoxanthine from adenine%3B in E. coli this activity has been detected in mutant strains but not in wild type;gbkey=CDS;product=adenine deaminase;protein_id=WP_001065718.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4568906 4570297 . - . ID=gene4509;Name=uhpT;gbkey=Gene;gene=uhpT;gene_biotype=protein_coding;locus_tag=SH04_RS22595;old_locus_tag=SH04_22605 NZ_CP010443.1 Protein Homology CDS 4568906 4570297 . - 0 ID=cds4400;Parent=gene4509;Dbxref=Genbank:WP_000879194.1;Name=WP_000879194.1;Note=cytoplasmic membrane protein that functions as a monomer%3B catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate;gbkey=CDS;gene=uhpT;product=hexose phosphate transporter;protein_id=WP_000879194.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4570435 4571754 . - . ID=gene4510;Name=SH04_RS22600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22600;old_locus_tag=SH04_22610 NZ_CP010443.1 Protein Homology CDS 4570435 4571754 . - 0 ID=cds4401;Parent=gene4510;Dbxref=Genbank:WP_000936566.1;Name=WP_000936566.1;Note=membrane protein regulates uhpT expression;gbkey=CDS;product=regulatory protein UhpC;protein_id=WP_000936566.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4571764 4573266 . - . ID=gene4511;Name=SH04_RS22605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22605;old_locus_tag=SH04_22615 NZ_CP010443.1 Protein Homology CDS 4571764 4573266 . - 0 ID=cds4402;Parent=gene4511;Dbxref=Genbank:WP_001295243.1;Name=WP_001295243.1;Note=Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph;gbkey=CDS;product=sensor protein UhpB;protein_id=WP_001295243.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4573266 4573856 . - . ID=gene4512;Name=SH04_RS22610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22610;old_locus_tag=SH04_22620 NZ_CP010443.1 Protein Homology CDS 4573266 4573856 . - 0 ID=cds4403;Parent=gene4512;Dbxref=Genbank:WP_000633668.1;Name=WP_000633668.1;Note=response regulator in two-component regulatory system wtih UhpB%3B phosphorylated UhpA is a positive activator uhpT%2C a hexose phosphates transporter;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000633668.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4573932 4574222 . - . ID=gene4513;Name=SH04_RS22615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22615;old_locus_tag=SH04_22625 NZ_CP010443.1 Protein Homology CDS 4573932 4574222 . - 0 ID=cds4404;Parent=gene4513;Dbxref=Genbank:WP_001181706.1;Name=WP_001181706.1;Note=with IlvB catalyzes the formation of 2-acetolactate from pyruvate%2C the small subunit is required for full activity and valine sensitivity%3B E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates%2C valine sensitivity and affinity for cofactors%3B also known as acetolactate synthase small subunit;gbkey=CDS;product=acetolactate synthase isozyme 1 small subunit;protein_id=WP_001181706.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4574226 4575914 . - . ID=gene4514;Name=SH04_RS22620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22620;old_locus_tag=SH04_22630 NZ_CP010443.1 Protein Homology CDS 4574226 4575914 . - 0 ID=cds4405;Parent=gene4514;Dbxref=Genbank:WP_000168475.1;Name=WP_000168475.1;gbkey=CDS;product=acetolactate synthase isozyme 1 large subunit;protein_id=WP_000168475.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4576020 4576118 . - . ID=gene4515;Name=SH04_RS22625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22625;old_locus_tag=SH04_22635 NZ_CP010443.1 Protein Homology CDS 4576020 4576118 . - 0 ID=cds4406;Parent=gene4515;Dbxref=Genbank:WP_001300753.1;Name=WP_001300753.1;gbkey=CDS;product=IlvBN operon leader peptide;protein_id=WP_001300753.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4576105 4576395 . + . ID=gene4516;Name=SH04_RS22630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22630;old_locus_tag=SH04_22640 NZ_CP010443.1 Protein Homology CDS 4576105 4576395 . + 0 ID=cds4407;Parent=gene4516;Dbxref=Genbank:WP_000454295.1;Name=WP_000454295.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000454295.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4576392 4576550 . + . ID=gene4517;Name=SH04_RS22635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22635;old_locus_tag=SH04_22645 NZ_CP010443.1 Protein Homology CDS 4576392 4576550 . + 0 ID=cds4408;Parent=gene4517;Dbxref=Genbank:WP_001308150.1;Name=WP_001308150.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001308150.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4576683 4576772 . + . ID=gene4518;Name=SH04_RS22640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22640;old_locus_tag=SH04_22650 NZ_CP010443.1 Protein Homology CDS 4576683 4576772 . + 0 ID=cds4409;Parent=gene4518;Dbxref=Genbank:WP_001054909.1;Name=WP_001054909.1;gbkey=CDS;product=small toxic protein TisB;protein_id=WP_001054909.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4577052 4578236 . + . ID=gene4519;Name=emrD;gbkey=Gene;gene=emrD;gene_biotype=protein_coding;locus_tag=SH04_RS22645;old_locus_tag=SH04_22655 NZ_CP010443.1 Protein Homology CDS 4577052 4578236 . + 0 ID=cds4410;Parent=gene4519;Dbxref=Genbank:WP_000828746.1;Name=WP_000828746.1;Note=multidrug efflux protein involved in adaptation to low energy shock;gbkey=CDS;gene=emrD;product=multidrug resistance protein D;protein_id=WP_000828746.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4578244 4578741 . - . ID=gene4520;Name=SH04_RS22650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22650;old_locus_tag=SH04_22660 NZ_CP010443.1 Protein Homology CDS 4578244 4578741 . - 0 ID=cds4411;Parent=gene4520;Dbxref=Genbank:WP_000148061.1;Name=WP_000148061.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000148061.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4578738 4579100 . - . ID=gene4521;Name=SH04_RS22655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22655;old_locus_tag=SH04_22665 NZ_CP010443.1 Protein Homology CDS 4578738 4579100 . - 0 ID=cds4412;Parent=gene4521;Dbxref=Genbank:WP_001113432.1;Name=WP_001113432.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001113432.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4579090 4579437 . - . ID=gene4522;Name=SH04_RS22660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22660;old_locus_tag=SH04_22670 NZ_CP010443.1 Protein Homology CDS 4579090 4579437 . - 0 ID=cds4413;Parent=gene4522;Dbxref=Genbank:WP_000703959.1;Name=WP_000703959.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000703959.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4579545 4579994 . + . ID=gene4523;Name=SH04_RS22665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22665;old_locus_tag=SH04_22675 NZ_CP010443.1 Protein Homology CDS 4579545 4579994 . + 0 ID=cds4414;Parent=gene4523;Dbxref=Genbank:WP_000511289.1;Name=WP_000511289.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000511289.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4580041 4581534 . - . ID=gene4524;Name=SH04_RS22670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22670;old_locus_tag=SH04_22680 NZ_CP010443.1 Protein Homology CDS 4580041 4581534 . - 0 ID=cds4415;Parent=gene4524;Dbxref=Genbank:WP_000828527.1;Name=WP_000828527.1;gbkey=CDS;product=sulfatase/phosphatase superfamily protein;protein_id=WP_000828527.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4581531 4583246 . - . ID=gene4525;Name=SH04_RS22675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22675;old_locus_tag=SH04_22685 NZ_CP010443.1 Protein Homology CDS 4581531 4583246 . - 0 ID=cds4416;Parent=gene4525;Dbxref=Genbank:WP_001087145.1;Name=WP_001087145.1;Note=uncharacterized member of the SSS superfamily of sodium-dependent solute transporters%3B unknown function;gbkey=CDS;product=transporter;protein_id=WP_001087145.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4583413 4584306 . + . ID=gene4526;Name=SH04_RS22680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22680;old_locus_tag=SH04_22690 NZ_CP010443.1 Protein Homology CDS 4583413 4584306 . + 0 ID=cds4417;Parent=gene4526;Dbxref=Genbank:WP_001013540.1;Name=WP_001013540.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_001013540.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4584479 4585117 . - . ID=gene4527;Name=SH04_RS22685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22685;old_locus_tag=SH04_22695 NZ_CP010443.1 Protein Homology CDS 4584479 4585117 . - 0 ID=cds4418;Parent=gene4527;Dbxref=Genbank:WP_001311230.1;Name=WP_001311230.1;gbkey=CDS;product=inactive 6-phospho-alpha-glucosidase;protein_id=WP_001311230.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4585117 4585602 . - . ID=gene4528;Name=SH04_RS22690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22690;old_locus_tag=SH04_22700 NZ_CP010443.1 Protein Homology CDS 4585117 4585602 . - 0 ID=cds4419;Parent=gene4528;Dbxref=Genbank:WP_000492410.1;Name=WP_000492410.1;gbkey=CDS;product=phosphotransferase enzyme IIB component GlvB;protein_id=WP_000492410.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4585627 4586733 . - . ID=gene4529;Name=SH04_RS22695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22695;old_locus_tag=SH04_22705 NZ_CP010443.1 Protein Homology CDS 4585627 4586733 . - 0 ID=cds4420;Parent=gene4529;Dbxref=Genbank:WP_000952140.1;Name=WP_000952140.1;gbkey=CDS;product=permease;protein_id=WP_000952140.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4587029 4587745 . + . ID=gene4530;Name=SH04_RS22700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22700;old_locus_tag=SH04_22710 NZ_CP010443.1 Protein Homology CDS 4587029 4587745 . + 0 ID=cds4421;Parent=gene4530;Dbxref=Genbank:WP_001300779.1;Name=WP_001300779.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001300779.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4587742 4589403 . - . ID=gene4531;Name=SH04_RS22705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22705;old_locus_tag=SH04_22715 NZ_CP010443.1 Protein Homology CDS 4587742 4589403 . - 0 ID=cds4422;Parent=gene4531;Dbxref=Genbank:WP_038432704.1;Name=WP_038432704.1;gbkey=CDS;product=transporter;protein_id=WP_038432704.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4589599 4590027 . - . ID=gene4532;Name=SH04_RS22710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22710;old_locus_tag=SH04_22720 NZ_CP010443.1 Protein Homology CDS 4589599 4590027 . - 0 ID=cds4423;Parent=gene4532;Dbxref=Genbank:WP_001243431.1;Name=WP_001243431.1;Note=16 kDa heat shock protein B%3B associates with aggregated proteins%2C together with ibpA%2C to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress%3B ATP-independent;gbkey=CDS;product=heat-shock protein IbpB;protein_id=WP_001243431.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4590139 4590552 . - . ID=gene4533;Name=SH04_RS22715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22715;old_locus_tag=SH04_22725 NZ_CP010443.1 Protein Homology CDS 4590139 4590552 . - 0 ID=cds4424;Parent=gene4533;Dbxref=Genbank:WP_001243437.1;Name=WP_001243437.1;Note=with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress;gbkey=CDS;product=heat-shock protein IbpA;protein_id=WP_001243437.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4590930 4591190 . + . ID=gene4534;Name=SH04_RS22720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22720;old_locus_tag=SH04_22730 NZ_CP010443.1 Protein Homology CDS 4590930 4591190 . + 0 ID=cds4425;Parent=gene4534;Dbxref=Genbank:WP_000019930.1;Name=WP_000019930.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000019930.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4591192 4592406 . - . ID=gene4535;Name=SH04_RS22725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22725;old_locus_tag=SH04_22735 NZ_CP010443.1 Protein Homology CDS 4591192 4592406 . - 0 ID=cds4426;Parent=gene4535;Dbxref=Genbank:WP_001336371.1;Name=WP_001336371.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001336371.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4592507 4593571 . + . ID=gene4536;Name=SH04_RS22730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22730;old_locus_tag=SH04_22740 NZ_CP010443.1 Protein Homology CDS 4592507 4593571 . + 0 ID=cds4427;Parent=gene4536;Dbxref=Genbank:WP_001340434.1;Name=WP_001340434.1;Note=FAD/NAD(P)-binding domain;gbkey=CDS;product=protein CbrA;protein_id=WP_001340434.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4593568 4594860 . - . ID=gene4537;Name=SH04_RS22735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22735;old_locus_tag=SH04_22745 NZ_CP010443.1 Protein Homology CDS 4593568 4594860 . - 0 ID=cds4428;Parent=gene4537;Dbxref=Genbank:WP_000354284.1;Name=WP_000354284.1;gbkey=CDS;product=D-galactonate transporter;protein_id=WP_000354284.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4594980 4596128 . - . ID=gene4538;Name=SH04_RS22740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22740;old_locus_tag=SH04_22750 NZ_CP010443.1 Protein Homology CDS 4594980 4596128 . - 0 ID=cds4429;Parent=gene4538;Dbxref=Genbank:WP_000705001.1;Name=WP_000705001.1;gbkey=CDS;product=D-galactonate dehydratase 2;protein_id=WP_000705001.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4596125 4596742 . - . ID=gene4539;Name=SH04_RS22745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22745;old_locus_tag=SH04_22755 NZ_CP010443.1 Protein Homology CDS 4596125 4596742 . - 0 ID=cds4430;Parent=gene4539;Dbxref=Genbank:WP_001198722.1;Name=WP_001198722.1;Note=catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate%3B functions in galactonate metabolism;gbkey=CDS;product=2-dehydro-3-deoxy-6-phosphogalactonate aldolase;protein_id=WP_001198722.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4596726 4597604 . - . ID=gene4540;Name=SH04_RS22750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22750;old_locus_tag=SH04_22760 NZ_CP010443.1 Protein Homology CDS 4596726 4597604 . - 0 ID=cds4431;Parent=gene4540;Dbxref=Genbank:WP_000127091.1;Name=WP_000127091.1;Note=catalyzes the formation of 2-dehydro-3-deoxy-D-galactonate 6-phosphate from 2-dehydro-3-deoxy-D-galactonate;gbkey=CDS;product=2-dehydro-3-deoxygalactonokinase;protein_id=WP_000127091.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4597601 4598290 . - . ID=gene4541;Name=SH04_RS22755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22755;old_locus_tag=SH04_22765 NZ_CP010443.1 Protein Homology CDS 4597601 4598290 . - 0 ID=cds4432;Parent=gene4541;Dbxref=Genbank:WP_000174305.1;Name=WP_000174305.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000174305.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4598568 4599224 . + . ID=gene4542;Name=SH04_RS22760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22760;old_locus_tag=SH04_22770 NZ_CP010443.1 Protein Homology CDS 4598568 4599224 . + 0 ID=cds4433;Parent=gene4542;Dbxref=Genbank:WP_000772934.1;Name=WP_000772934.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000772934.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4599270 4600082 . - . ID=gene4543;Name=SH04_RS22765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22765;old_locus_tag=SH04_22775 NZ_CP010443.1 Protein Homology CDS 4599270 4600082 . - 0 ID=cds4434;Parent=gene4543;Dbxref=Genbank:WP_000985549.1;Name=WP_000985549.1;Note=YidA%3B catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate)%2C mannose 1-phosphate and p-nitrophenyl phosphate%3B hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form%3B member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins;gbkey=CDS;product=sugar phosphatase YidA;protein_id=WP_000985549.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4600197 4600595 . - . ID=gene4544;Name=SH04_RS22770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22770;old_locus_tag=SH04_22780 NZ_CP010443.1 Protein Homology CDS 4600197 4600595 . - 0 ID=cds4435;Parent=gene4544;Dbxref=Genbank:WP_000522208.1;Name=WP_000522208.1;gbkey=CDS;product=DUF937 domain-containing protein;protein_id=WP_000522208.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4600615 4600815 . - . ID=gene4545;Name=SH04_RS22775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22775;old_locus_tag=SH04_22785 NZ_CP010443.1 Protein Homology CDS 4600615 4600815 . - 0 ID=cds4436;Parent=gene4545;Dbxref=Genbank:WP_001347584.1;Name=WP_001347584.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001347584.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4600835 4603249 . - . ID=gene4546;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;locus_tag=SH04_RS22780;old_locus_tag=SH04_22790 NZ_CP010443.1 Protein Homology CDS 4600835 4603249 . - 0 ID=cds4437;Parent=gene4546;Dbxref=Genbank:WP_000072067.1;Name=WP_000072067.1;Note=negatively supercoils closed circular double-stranded DNA;gbkey=CDS;gene=gyrB;product=DNA gyrase subunit B;protein_id=WP_000072067.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4603278 4604351 . - . ID=gene4547;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;locus_tag=SH04_RS22785;old_locus_tag=SH04_22795 NZ_CP010443.1 Protein Homology CDS 4603278 4604351 . - 0 ID=cds4438;Parent=gene4547;Dbxref=Genbank:WP_000060112.1;Name=WP_000060112.1;Note=Required for DNA replication%3B binds preferentially to single-stranded%2C linear DNA;gbkey=CDS;gene=recF;product=DNA recombination protein RecF;protein_id=WP_000060112.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4604351 4605451 . - . ID=gene4548;Name=SH04_RS22790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SH04_RS22790;old_locus_tag=SH04_22800 NZ_CP010443.1 Protein Homology CDS 4604351 4605451 . - 0 ID=cds4439;Parent=gene4548;Dbxref=Genbank:WP_000673464.1;Name=WP_000673464.1;Note=binds the polymerase to DNA and acts as a sliding clamp;gbkey=CDS;product=DNA polymerase III subunit beta;protein_id=WP_000673464.1;transl_table=11 NZ_CP010443.1 RefSeq gene 4605456 4606859 . - . ID=gene4549;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=SH04_RS22795;old_locus_tag=SH04_22805 NZ_CP010443.1 Protein Homology CDS 4605456 4606859 . - 0 ID=cds4440;Parent=gene4549;Dbxref=Genbank:WP_000059111.1;Name=WP_000059111.1;Note=binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication%3B can also affect transcription of multiple genes including itself.;gbkey=CDS;gene=dnaA;product=chromosomal replication initiator protein DnaA;protein_id=WP_000059111.1;transl_table=11 ###