locus-tag class description SH07_RS00005 PF00468 Ribosomal protein L34 SH07_RS00010 PF00825 Ribonuclease P SH07_RS00015 PF01809 Putative membrane protein insertion efficiency factor SH07_RS00020 PF02096 60Kd inner membrane protein SH07_RS00020 PF14849 YidC periplasmic domain SH07_RS00025 PF10396 GTP-binding protein TrmE N-terminus SH07_RS00025 PF01926 50S ribosome-binding GTPase SH07_RS00025 PF12631 MnmE helical domain SH07_RS00030 PF08053 Tryptophanase operon leader peptide SH07_RS00035 PF01212 Beta-eliminating lyase SH07_RS00040 PF03222 Tryptophan/tyrosine permease family SH07_RS00045 PF07690 Major Facilitator Superfamily SH07_RS00050 PF03466 LysR substrate binding domain SH07_RS00050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS00060 PF03358 NADPH-dependent FMN reductase SH07_RS00065 PF00860 Permease family SH07_RS00070 PF13419 Haloacid dehalogenase-like hydrolase SH07_RS00080 PF03691 Uncharacterised protein family (UPF0167) SH07_RS00085 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH07_RS00090 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH07_RS00090 PF00756 Putative esterase SH07_RS00095 PF02264 LamB porin SH07_RS00095 PF11471 Maltoporin periplasmic N-terminal extension SH07_RS00100 PF00232 Glycosyl hydrolase family 1 SH07_RS00105 PF02378 Phosphotransferase system, EIIC SH07_RS00105 PF00367 phosphotransferase system, EIIB SH07_RS00105 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH07_RS00110 PF00874 PRD domain SH07_RS00110 PF03123 CAT RNA binding domain SH07_RS00115 PF01895 PhoU domain SH07_RS00120 PF00005 ABC transporter SH07_RS00125 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS00130 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS00135 PF12849 PBP superfamily domain SH07_RS00140 PF04754 Putative transposase, YhgA-like SH07_RS00145 PF01380 SIS domain SH07_RS00150 PF14602 Hexapeptide repeat of succinyl-transferase SH07_RS00150 PF00132 Bacterial transferase hexapeptide (six repeats) SH07_RS00150 PF12804 MobA-like NTP transferase domain SH07_RS00155 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SH07_RS00155 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SH07_RS00160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH07_RS00160 PF02874 ATP synthase alpha/beta family, beta-barrel domain SH07_RS00165 PF00231 ATP synthase SH07_RS00170 PF02874 ATP synthase alpha/beta family, beta-barrel domain SH07_RS00170 PF00306 ATP synthase alpha/beta chain, C terminal domain SH07_RS00170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH07_RS00175 PF00213 ATP synthase delta (OSCP) subunit SH07_RS00180 PF00430 ATP synthase B/B' CF(0) SH07_RS00185 PF00137 ATP synthase subunit C SH07_RS00190 PF00119 ATP synthase A chain SH07_RS00195 PF03899 ATP synthase I chain SH07_RS00200 PF02527 rRNA small subunit methyltransferase G SH07_RS00205 PF01134 Glucose inhibited division protein A SH07_RS00205 PF13932 GidA associated domain SH07_RS00210 PF00258 Flavodoxin SH07_RS00215 PF01037 Lrp/AsnC ligand binding domain SH07_RS00220 PF03590 Aspartate-ammonia ligase SH07_RS00225 PF05762 VWA domain containing CoxE-like protein SH07_RS00230 PF12592 Protein of unknown function (DUF3763) SH07_RS00230 PF17868 AAA lid domain SH07_RS00230 PF07728 AAA domain (dynein-related subfamily) SH07_RS00235 PF02705 K+ potassium transporter SH07_RS00240 PF05025 RbsD / FucU transport protein family SH07_RS00245 PF00005 ABC transporter SH07_RS00250 PF02653 Branched-chain amino acid transport system / permease component SH07_RS00255 PF13407 Periplasmic binding protein domain SH07_RS00260 PF00294 pfkB family carbohydrate kinase SH07_RS00265 PF00356 Bacterial regulatory proteins, lacI family SH07_RS00270 PF07690 Major Facilitator Superfamily SH07_RS00275 PF07729 FCD domain SH07_RS00275 PF00392 Bacterial regulatory proteins, gntR family SH07_RS00310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS00310 PF03466 LysR substrate binding domain SH07_RS00315 PF04219 Protein of unknown function, DUF SH07_RS00320 PF01078 Magnesium chelatase, subunit ChlI SH07_RS00320 PF13335 Magnesium chelatase, subunit ChlI C-terminal SH07_RS00325 PF08046 IlvGEDA operon leader peptide SH07_RS00340 PF01063 Amino-transferase class IV SH07_RS00345 PF00920 Dehydratase family SH07_RS00350 PF00291 Pyridoxal-phosphate dependent enzyme SH07_RS00350 PF00585 C-terminal regulatory domain of Threonine dehydratase SH07_RS00355 PF03466 LysR substrate binding domain SH07_RS00355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS00360 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SH07_RS00360 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SH07_RS00375 PF13361 UvrD-like helicase C-terminal domain SH07_RS00375 PF00580 UvrD/REP helicase N-terminal domain SH07_RS00380 PF02541 Ppx/GppA phosphatase family SH07_RS00385 PF00270 DEAD/DEAH box helicase SH07_RS00385 PF00271 Helicase conserved C-terminal domain SH07_RS00390 PF00085 Thioredoxin SH07_RS00400 PF07497 Rho termination factor, RNA-binding domain SH07_RS00400 PF07498 Rho termination factor, N-terminal domain SH07_RS00400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH07_RS00410 PF00953 Glycosyl transferase family 4 SH07_RS00415 PF02706 Chain length determinant protein SH07_RS00420 PF02350 UDP-N-acetylglucosamine 2-epimerase SH07_RS00425 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SH07_RS00425 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SH07_RS00425 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SH07_RS00430 PF16363 GDP-mannose 4,6 dehydratase SH07_RS00435 PF00483 Nucleotidyl transferase SH07_RS00445 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SH07_RS00450 PF01943 Polysaccharide biosynthesis protein SH07_RS00455 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 SH07_RS00460 PF06899 WzyE protein, O-antigen assembly polymerase SH07_RS00465 PF03808 Glycosyl transferase WecB/TagA/CpsF family SH07_RS00470 PF00324 Amino acid permease SH07_RS00495 PF04055 Radical SAM superfamily SH07_RS00495 PF13186 Iron-sulfur cluster-binding domain SH07_RS00500 PF00884 Sulfatase SH07_RS00505 PF07719 Tetratricopeptide repeat SH07_RS00505 PF07219 HemY protein N-terminus SH07_RS00510 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase SH07_RS00515 PF02602 Uroporphyrinogen-III synthase HemD SH07_RS00520 PF03900 Porphobilinogen deaminase, C-terminal domain SH07_RS00520 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SH07_RS00525 PF12633 Adenylate cyclase NT domain SH07_RS00525 PF01295 Adenylate cyclase, class-I SH07_RS00530 PF01491 Frataxin-like domain SH07_RS00535 PF13627 Prokaryotic lipoprotein-attachment site SH07_RS00540 PF01678 Diaminopimelate epimerase SH07_RS00545 PF04340 Protein of unknown function, DUF484 SH07_RS00550 PF00589 Phage integrase family SH07_RS00550 PF02899 Phage integrase, N-terminal SAM-like domain SH07_RS00555 PF13419 Haloacid dehalogenase-like hydrolase SH07_RS00560 PF00580 UvrD/REP helicase N-terminal domain SH07_RS00560 PF13361 UvrD-like helicase C-terminal domain SH07_RS00565 PF09992 Phosphodiester glycosidase SH07_RS00575 PF01544 CorA-like Mg2+ transporter protein SH07_RS00580 PF10947 Protein of unknown function (DUF2628) SH07_RS00590 PF00892 EamA-like transporter family SH07_RS00595 PF03061 Thioesterase superfamily SH07_RS00600 PF02253 Phospholipase A1 SH07_RS00605 PF00270 DEAD/DEAH box helicase SH07_RS00605 PF00271 Helicase conserved C-terminal domain SH07_RS00605 PF00570 HRDC domain SH07_RS00605 PF09382 RQC domain SH07_RS00605 PF16124 RecQ zinc-binding SH07_RS00610 PF01810 LysE type translocator SH07_RS00615 PF01810 LysE type translocator SH07_RS00620 PF12146 Serine aminopeptidase, S33 SH07_RS00630 PF00892 EamA-like transporter family SH07_RS00635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS00635 PF03466 LysR substrate binding domain SH07_RS00640 PF01717 Cobalamin-independent synthase, Catalytic domain SH07_RS00640 PF08267 Cobalamin-independent synthase, N-terminal domain SH07_RS00645 PF01738 Dienelactone hydrolase family SH07_RS00650 PF01048 Phosphorylase superfamily SH07_RS00655 PF02646 RmuC family SH07_RS00660 PF01209 ubiE/COQ5 methyltransferase family SH07_RS00665 PF02036 SCP-2 sterol transfer family SH07_RS00670 PF03109 ABC1 family SH07_RS00675 PF02416 mttA/Hcf106 family SH07_RS00685 PF00902 Sec-independent protein translocase protein (TatC) SH07_RS00690 PF01026 TatD related DNase SH07_RS00695 PF02357 Transcription termination factor nusG SH07_RS00700 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SH07_RS00705 PF00175 Oxidoreductase NAD-binding domain SH07_RS00705 PF00970 Oxidoreductase FAD-binding domain SH07_RS00710 PF00108 Thiolase, N-terminal domain SH07_RS00710 PF02803 Thiolase, C-terminal domain SH07_RS00715 PF00378 Enoyl-CoA hydratase/isomerase SH07_RS00715 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH07_RS00715 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH07_RS00720 PF00557 Metallopeptidase family M24 SH07_RS00725 PF09186 Domain of unknown function (DUF1949) SH07_RS00725 PF01205 Uncharacterized protein family UPF0029 SH07_RS00730 PF02386 Cation transport protein SH07_RS00735 PF12724 Flavodoxin domain SH07_RS00765 PF03205 Molybdopterin guanine dinucleotide synthesis protein B SH07_RS00770 PF12804 MobA-like NTP transferase domain SH07_RS00775 PF06288 Protein of unknown function (DUF1040) SH07_RS00780 PF01636 Phosphotransferase enzyme family SH07_RS00785 PF01323 DSBA-like thioredoxin domain SH07_RS00790 PF06097 Bacterial protein of unknown function (DUF945) SH07_RS00795 PF01553 Acyltransferase SH07_RS00805 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SH07_RS00805 PF01612 3'-5' exonuclease SH07_RS00805 PF01367 5'-3' exonuclease, C-terminal SAM fold SH07_RS00805 PF00476 DNA polymerase family A SH07_RS00810 PF01926 50S ribosome-binding GTPase SH07_RS00815 PF04220 Der GTPase activator (YihI) SH07_RS00820 PF04055 Radical SAM superfamily SH07_RS00820 PF06969 HemN C-terminal domain SH07_RS00830 PF00158 Sigma-54 interaction domain SH07_RS00830 PF02954 Bacterial regulatory protein, Fis family SH07_RS00830 PF00072 Response regulator receiver domain SH07_RS00835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS00835 PF00989 PAS fold SH07_RS00835 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS00840 PF03951 Glutamine synthetase, beta-Grasp domain SH07_RS00840 PF00120 Glutamine synthetase, catalytic domain SH07_RS00850 PF00009 Elongation factor Tu GTP binding domain SH07_RS00850 PF00679 Elongation factor G C-terminus SH07_RS00850 PF03144 Elongation factor Tu domain 2 SH07_RS00855 PF07702 UTRA domain SH07_RS00855 PF00392 Bacterial regulatory proteins, gntR family SH07_RS00860 PF01261 Xylose isomerase-like TIM barrel SH07_RS00865 PF07690 Major Facilitator Superfamily SH07_RS00870 PF06178 Oligogalacturonate-specific porin protein (KdgM) SH07_RS00885 PF01055 Glycosyl hydrolases family 31 SH07_RS00890 PF01263 Aldose 1-epimerase SH07_RS00900 PF01791 DeoC/LacD family aldolase SH07_RS00905 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH07_RS00905 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH07_RS00910 PF00294 pfkB family carbohydrate kinase SH07_RS00915 PF00455 DeoR C terminal sensor domain SH07_RS00915 PF08220 DeoR-like helix-turn-helix domain SH07_RS00920 PF13419 Haloacid dehalogenase-like hydrolase SH07_RS00925 PF03631 Virulence factor BrkB SH07_RS00930 PF02580 D-Tyr-tRNA(Tyr) deacylase SH07_RS00935 PF00583 Acetyltransferase (GNAT) family SH07_RS00935 PF09500 Putative thioesterase (yiiD_Cterm) SH07_RS00940 PF01402 Ribbon-helix-helix protein, copG family SH07_RS00955 PF04216 Protein involved in formate dehydrogenase formation SH07_RS00960 PF01292 Prokaryotic cytochrome b561 SH07_RS00965 PF13247 4Fe-4S dicluster domain SH07_RS00965 PF09163 Formate dehydrogenase N, transmembrane SH07_RS00970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS00970 PF00384 Molybdopterin oxidoreductase SH07_RS00970 PF01568 Molydopterin dinucleotide binding domain SH07_RS00975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS00975 PF00384 Molybdopterin oxidoreductase SH07_RS00975 PF01568 Molydopterin dinucleotide binding domain SH07_RS00980 PF02634 FdhD/NarQ family SH07_RS00985 PF12889 Protein of unknown function (DUF3829) SH07_RS00990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH07_RS00990 PF08279 HTH domain SH07_RS00995 PF05343 M42 glutamyl aminopeptidase SH07_RS01000 PF02378 Phosphotransferase system, EIIC SH07_RS01000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH07_RS01005 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH07_RS01010 PF05336 L-rhamnose mutarotase SH07_RS01015 PF00596 Class II Aldolase and Adducin N-terminal domain SH07_RS01020 PF06134 L-rhamnose isomerase (RhaA) SH07_RS01025 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH07_RS01025 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH07_RS01035 PF02311 AraC-like ligand binding domain SH07_RS01035 PF12833 Helix-turn-helix domain SH07_RS01040 PF02311 AraC-like ligand binding domain SH07_RS01040 PF12833 Helix-turn-helix domain SH07_RS01045 PF06379 L-rhamnose-proton symport protein (RhaT) SH07_RS01050 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SH07_RS01050 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SH07_RS01060 PF03812 2-keto-3-deoxygluconate permease SH07_RS01065 PF03473 MOSC domain SH07_RS01065 PF03475 3-alpha domain SH07_RS01070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS01070 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS01070 PF00672 HAMP domain SH07_RS01070 PF16527 Two-component sensor protein CpxA, periplasmic domain SH07_RS01075 PF00072 Response regulator receiver domain SH07_RS01075 PF00486 Transcriptional regulatory protein, C terminal SH07_RS01080 PF07813 LTXXQ motif family protein SH07_RS01085 PF01545 Cation efflux family SH07_RS01085 PF16916 Dimerisation domain of Zinc Transporter SH07_RS01090 PF00365 Phosphofructokinase SH07_RS01100 PF02611 CDP-diacylglycerol pyrophosphatase SH07_RS01105 PF00121 Triosephosphate isomerase SH07_RS01110 PF07305 Protein of unknown function (DUF1454) SH07_RS01115 PF05656 Protein of unknown function (DUF805) SH07_RS01120 PF04175 Protein of unknown function (DUF406) SH07_RS01125 PF00582 Universal stress protein family SH07_RS01130 PF00175 Oxidoreductase NAD-binding domain SH07_RS01130 PF00970 Oxidoreductase FAD-binding domain SH07_RS01135 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded SH07_RS01140 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH07_RS01140 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH07_RS01145 PF00230 Major intrinsic protein SH07_RS01150 PF06005 Cell division protein ZapB SH07_RS01155 PF03737 Aldolase/RraA SH07_RS01160 PF01040 UbiA prenyltransferase family SH07_RS01165 PF10431 C-terminal, D2-small domain, of ClpB protein SH07_RS01165 PF00004 ATPase family associated with various cellular activities (AAA) SH07_RS01165 PF07724 AAA domain (Cdc48 subfamily) SH07_RS01170 PF00227 Proteasome subunit SH07_RS01175 PF05036 Sporulation related domain SH07_RS01180 PF00356 Bacterial regulatory proteins, lacI family SH07_RS01185 PF18074 Primosomal protein N C-terminal domain SH07_RS01185 PF17764 3′ DNA-binding domain (3′BD) SH07_RS01185 PF00271 Helicase conserved C-terminal domain SH07_RS01185 PF00270 DEAD/DEAH box helicase SH07_RS01185 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SH07_RS01190 PF01197 Ribosomal protein L31 SH07_RS01195 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH07_RS01200 PF01340 Met Apo-repressor, MetJ SH07_RS01210 PF00742 Homoserine dehydrogenase SH07_RS01210 PF00696 Amino acid kinase family SH07_RS01210 PF03447 Homoserine dehydrogenase, NAD binding domain SH07_RS01220 PF02219 Methylenetetrahydrofolate reductase SH07_RS01225 PF00141 Peroxidase SH07_RS01230 PF00892 EamA-like transporter family SH07_RS01235 PF06940 Domain of unknown function (DUF1287) SH07_RS01245 PF00465 Iron-containing alcohol dehydrogenase SH07_RS01250 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH07_RS01255 PF02896 PEP-utilising enzyme, TIM barrel domain SH07_RS01255 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH07_RS01255 PF00391 PEP-utilising enzyme, mobile domain SH07_RS01255 PF05524 PEP-utilising enzyme, N-terminal SH07_RS01255 PF00381 PTS HPr component phosphorylation site SH07_RS01265 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH07_RS01270 PF02901 Pyruvate formate lyase-like SH07_RS01270 PF01228 Glycine radical SH07_RS01275 PF04055 Radical SAM superfamily SH07_RS01280 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH07_RS01285 PF12833 Helix-turn-helix domain SH07_RS01290 PF00884 Sulfatase SH07_RS01295 PF00311 Phosphoenolpyruvate carboxylase SH07_RS01305 PF01546 Peptidase family M20/M25/M40 SH07_RS01305 PF07687 Peptidase dimerisation domain SH07_RS01310 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH07_RS01310 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH07_RS01315 PF00696 Amino acid kinase family SH07_RS01320 PF14698 Argininosuccinate lyase C-terminal SH07_RS01320 PF00206 Lyase SH07_RS01325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS01325 PF03466 LysR substrate binding domain SH07_RS01330 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH07_RS01330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH07_RS01335 PF00440 Bacterial regulatory proteins, tetR family SH07_RS01340 PF07226 Protein of unknown function (DUF1422) SH07_RS01345 PF05958 tRNA (Uracil-5-)-methyltransferase SH07_RS01350 PF07715 TonB-dependent Receptor Plug Domain SH07_RS01350 PF00593 TonB dependent receptor SH07_RS01355 PF01177 Asp/Glu/Hydantoin racemase SH07_RS01380 PF01565 FAD binding domain SH07_RS01380 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SH07_RS01385 PF08279 HTH domain SH07_RS01385 PF02237 Biotin protein ligase C terminal domain SH07_RS01385 PF03099 Biotin/lipoate A/B protein ligase family SH07_RS01390 PF00485 Phosphoribulokinase / Uridine kinase family SH07_RS01420 PF03143 Elongation factor Tu C-terminal domain SH07_RS01420 PF03144 Elongation factor Tu domain 2 SH07_RS01420 PF00009 Elongation factor Tu GTP binding domain SH07_RS01425 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SH07_RS01430 PF00467 KOW motif SH07_RS01430 PF02357 Transcription termination factor nusG SH07_RS01435 PF00298 Ribosomal protein L11, RNA binding domain SH07_RS01435 PF03946 Ribosomal protein L11, N-terminal domain SH07_RS01440 PF00687 Ribosomal protein L1p/L10e family SH07_RS01445 PF00466 Ribosomal protein L10 SH07_RS01450 PF00542 Ribosomal protein L7/L12 C-terminal domain SH07_RS01450 PF16320 Ribosomal protein L7/L12 dimerisation domain SH07_RS01455 PF04560 RNA polymerase Rpb2, domain 7 SH07_RS01455 PF00562 RNA polymerase Rpb2, domain 6 SH07_RS01455 PF10385 RNA polymerase beta subunit external 1 domain SH07_RS01455 PF04561 RNA polymerase Rpb2, domain 2 SH07_RS01455 PF04563 RNA polymerase beta subunit SH07_RS01455 PF04565 RNA polymerase Rpb2, domain 3 SH07_RS01460 PF04998 RNA polymerase Rpb1, domain 5 SH07_RS01460 PF05000 RNA polymerase Rpb1, domain 4 SH07_RS01460 PF04983 RNA polymerase Rpb1, domain 3 SH07_RS01460 PF04997 RNA polymerase Rpb1, domain 1 SH07_RS01460 PF00623 RNA polymerase Rpb1, domain 2 SH07_RS01470 PF06968 Biotin and Thiamin Synthesis associated domain SH07_RS01470 PF04055 Radical SAM superfamily SH07_RS01475 PF05690 Thiazole biosynthesis protein ThiG SH07_RS01480 PF02597 ThiS family SH07_RS01485 PF00899 ThiF family SH07_RS01490 PF02581 Thiamine monophosphate synthase SH07_RS01495 PF13667 ThiC-associated domain SH07_RS01495 PF01964 Radical SAM ThiC family SH07_RS01500 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ SH07_RS01505 PF09297 NADH pyrophosphatase zinc ribbon domain SH07_RS01505 PF00293 NUDIX domain SH07_RS01510 PF01208 Uroporphyrinogen decarboxylase (URO-D) SH07_RS01515 PF04493 Endonuclease V SH07_RS01520 PF04222 Protein of unknown function (DUF416) SH07_RS01525 PF00216 Bacterial DNA-binding protein SH07_RS01530 PF07356 Protein of unknown function (DUF1481) SH07_RS01535 PF13801 Heavy-metal resistance SH07_RS01540 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS01540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS01545 PF00158 Sigma-54 interaction domain SH07_RS01545 PF00072 Response regulator receiver domain SH07_RS01545 PF02954 Bacterial regulatory protein, Fis family SH07_RS01550 PF02844 Phosphoribosylglycinamide synthetase, N domain SH07_RS01550 PF02843 Phosphoribosylglycinamide synthetase, C domain SH07_RS01550 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SH07_RS01555 PF02142 MGS-like domain SH07_RS01555 PF01808 AICARFT/IMPCHase bienzyme SH07_RS01595 PF13673 Acetyltransferase (GNAT) domain SH07_RS01600 PF04204 Homoserine O-succinyltransferase SH07_RS01605 PF01274 Malate synthase SH07_RS01610 PF00463 Isocitrate lyase family SH07_RS01615 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) SH07_RS01620 PF07906 ShET2 enterotoxin, N-terminal region SH07_RS01625 PF09339 IclR helix-turn-helix domain SH07_RS01625 PF01614 Bacterial transcriptional regulator SH07_RS01630 PF02310 B12 binding domain SH07_RS01630 PF02607 B12 binding domain SH07_RS01630 PF02574 Homocysteine S-methyltransferase SH07_RS01630 PF02965 Vitamin B12 dependent methionine synthase, activation domain SH07_RS01630 PF00809 Pterin binding enzyme SH07_RS01635 PF02690 Na+/Pi-cotransporter SH07_RS01640 PF03575 Peptidase family S51 SH07_RS01645 PF00849 RNA pseudouridylate synthase SH07_RS01645 PF01479 S4 domain SH07_RS01650 PF11656 YjbD family (DUF3811) SH07_RS01655 PF00696 Amino acid kinase family SH07_RS01655 PF01842 ACT domain SH07_RS01660 PF00342 Phosphoglucose isomerase SH07_RS01665 PF03400 IS1 transposase SH07_RS01670 PF03811 InsA N-terminal domain SH07_RS01670 PF12759 InsA C-terminal domain SH07_RS01675 PF11106 Exopolysaccharide production protein YjbE SH07_RS01680 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF SH07_RS01685 PF06251 Capsule biosynthesis GfcC SH07_RS01690 PF06082 Exopolysaccharide biosynthesis protein YbjH SH07_RS01695 PF17089 Uncharacterised protein family SH07_RS01705 PF06146 Phosphate-starvation-inducible E SH07_RS01710 PF00083 Sugar (and other) transporter SH07_RS01715 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS01720 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS01720 PF14785 Maltose transport system permease protein MalF P2 domain SH07_RS01725 PF01547 Bacterial extracellular solute-binding protein SH07_RS01735 PF17912 MalK OB fold domain SH07_RS01735 PF00005 ABC transporter SH07_RS01740 PF02264 LamB porin SH07_RS01745 PF07148 Maltose operon periplasmic protein precursor (MalM) SH07_RS01755 PF13599 Pentapeptide repeats (9 copies) SH07_RS01755 PF13981 SopA-like central domain SH07_RS01760 PF04345 Chorismate lyase SH07_RS01765 PF01040 UbiA prenyltransferase family SH07_RS01770 PF01553 Acyltransferase SH07_RS01775 PF01219 Prokaryotic diacylglycerol kinase SH07_RS01780 PF00717 Peptidase S24-like SH07_RS01780 PF01726 LexA DNA binding domain SH07_RS01785 PF01554 MatE SH07_RS01790 PF05532 CsbD-like SH07_RS01795 PF01475 Ferric uptake regulator family SH07_RS01805 PF10897 Protein of unknown function (DUF2713) SH07_RS01810 PF01207 Dihydrouridine synthase (Dus) SH07_RS01815 PF09583 Phage shock protein G (Phageshock_PspG) SH07_RS01820 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS01820 PF00107 Zinc-binding dehydrogenase SH07_RS01825 PF00772 DnaB-like helicase N terminal domain SH07_RS01825 PF03796 DnaB-like helicase C terminal domain SH07_RS01830 PF01168 Alanine racemase, N-terminal domain SH07_RS01830 PF00842 Alanine racemase, C-terminal domain SH07_RS01835 PF00155 Aminotransferase class I and II SH07_RS01845 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SH07_RS01850 PF01894 Uncharacterised protein family UPF0047 SH07_RS01855 PF04237 YjbR SH07_RS01860 PF00005 ABC transporter SH07_RS01860 PF17755 UvrA DNA-binding domain SH07_RS01860 PF17760 UvrA interaction domain SH07_RS01865 PF00436 Single-strand binding protein family SH07_RS01870 PF15940 Family of unknown function SH07_RS01875 PF12792 CSS motif domain associated with EAL SH07_RS01875 PF00563 EAL domain SH07_RS01880 PF12833 Helix-turn-helix domain SH07_RS01885 PF00376 MerR family regulatory protein SH07_RS01885 PF09278 MerR, DNA binding SH07_RS01890 PF00860 Permease family SH07_RS01895 PF00999 Sodium/hydrogen exchanger family SH07_RS01900 PF00805 Pentapeptide repeats (8 copies) SH07_RS01905 PF00474 Sodium:solute symporter family SH07_RS01910 PF04341 Protein of unknown function, DUF485 SH07_RS01915 PF13193 AMP-binding enzyme C-terminal domain SH07_RS01915 PF00501 AMP-binding enzyme SH07_RS01915 PF16177 Acetyl-coenzyme A synthetase N-terminus SH07_RS01920 PF02335 Cytochrome c552 SH07_RS01925 PF13435 Cytochrome c554 and c-prime SH07_RS01925 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) SH07_RS01930 PF13247 4Fe-4S dicluster domain SH07_RS01930 PF00037 4Fe-4S binding domain SH07_RS01935 PF03916 Polysulphide reductase, NrfD SH07_RS01940 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SH07_RS01940 PF01578 Cytochrome C assembly protein SH07_RS01945 PF03918 Cytochrome C biogenesis protein SH07_RS01955 PF00375 Sodium:dicarboxylate symporter family SH07_RS01960 PF08238 Sel1 repeat SH07_RS01965 PF00384 Molybdopterin oxidoreductase SH07_RS01965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS01965 PF01568 Molydopterin dinucleotide binding domain SH07_RS01970 PF01568 Molydopterin dinucleotide binding domain SH07_RS01970 PF00384 Molybdopterin oxidoreductase SH07_RS01970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS01975 PF02321 Outer membrane efflux protein SH07_RS01980 PF04632 Fusaric acid resistance protein family SH07_RS01985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH07_RS01985 PF00529 HlyD membrane-fusion protein of T1SS SH07_RS01990 PF17090 Uncharacterised protein family SH07_RS01995 PF14863 Alkyl sulfatase dimerisation SH07_RS01995 PF00753 Metallo-beta-lactamase superfamily SH07_RS01995 PF14864 Alkyl sulfatase C-terminal SH07_RS02000 PF00480 ROK family SH07_RS02005 PF00834 Ribulose-phosphate 3 epimerase family SH07_RS02010 PF02653 Branched-chain amino acid transport system / permease component SH07_RS02015 PF00005 ABC transporter SH07_RS02020 PF13407 Periplasmic binding protein domain SH07_RS02025 PF01418 Helix-turn-helix domain, rpiR family SH07_RS02025 PF01380 SIS domain SH07_RS02030 PF02502 Ribose/Galactose Isomerase SH07_RS02040 PF12706 Beta-lactamase superfamily domain SH07_RS02045 PF00583 Acetyltransferase (GNAT) family SH07_RS02055 PF07969 Amidohydrolase family SH07_RS02060 PF00005 ABC transporter SH07_RS02065 PF00005 ABC transporter SH07_RS02070 PF06007 Phosphonate metabolism protein PhnJ SH07_RS02075 PF05861 Bacterial phosphonate metabolism protein (PhnI) SH07_RS02080 PF05845 Bacterial phosphonate metabolism protein (PhnH) SH07_RS02085 PF06754 Phosphonate metabolism protein PhnG SH07_RS02090 PF00392 Bacterial regulatory proteins, gntR family SH07_RS02090 PF07702 UTRA domain SH07_RS02105 PF00005 ABC transporter SH07_RS02110 PF06983 3-demethylubiquinone-9 3-methyltransferase SH07_RS02115 PF08274 PhnA Zinc-Ribbon SH07_RS02115 PF03831 PhnA domain SH07_RS02120 PF00350 Dynamin family SH07_RS02125 PF13990 YjcZ-like protein SH07_RS02130 PF08946 Osmosensory transporter coiled coil SH07_RS02130 PF00083 Sugar (and other) transporter SH07_RS02140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS02140 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS02145 PF00072 Response regulator receiver domain SH07_RS02145 PF00486 Transcriptional regulatory protein, C terminal SH07_RS02150 PF08019 Phosphoethanolamine transferase EptA/EptB SH07_RS02150 PF00884 Sulfatase SH07_RS02155 PF13520 Amino acid permease SH07_RS02160 PF12833 Helix-turn-helix domain SH07_RS02165 PF01276 Orn/Lys/Arg decarboxylase, major domain SH07_RS02165 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH07_RS02165 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH07_RS02170 PF12833 Helix-turn-helix domain SH07_RS02180 PF11975 Family 4 glycosyl hydrolase C-terminal domain SH07_RS02180 PF02056 Family 4 glycosyl hydrolase SH07_RS02190 PF09997 Predicted membrane protein (DUF2238) SH07_RS02195 PF05683 Fumarase C-terminus SH07_RS02195 PF05681 Fumarate hydratase (Fumerase) SH07_RS02200 PF03605 Anaerobic c4-dicarboxylate membrane transporter SH07_RS02210 PF00072 Response regulator receiver domain SH07_RS02215 PF00989 PAS fold SH07_RS02215 PF17203 Single cache domain 3 SH07_RS02215 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SH07_RS02215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS02220 PF06902 Divergent 4Fe-4S mono-cluster SH07_RS02225 PF14542 GCN5-related N-acetyl-transferase SH07_RS02230 PF11080 Endoribonuclease GhoS SH07_RS02235 PF10753 Toxin GhoT_OrtT SH07_RS02240 PF01336 OB-fold nucleic acid binding domain SH07_RS02240 PF00152 tRNA synthetases class II (D, K and N) SH07_RS02245 PF00854 POT family SH07_RS02250 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH07_RS02250 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH07_RS02250 PF01276 Orn/Lys/Arg decarboxylase, major domain SH07_RS02255 PF13520 Amino acid permease SH07_RS02260 PF18500 CadC C-terminal domain 1 SH07_RS02260 PF00486 Transcriptional regulatory protein, C terminal SH07_RS02275 PF11412 Disulphide bond corrector protein DsbC SH07_RS02275 PF02683 Cytochrome C biogenesis protein transmembrane region SH07_RS02280 PF03091 CutA1 divalent ion tolerance protein SH07_RS02285 PF03605 Anaerobic c4-dicarboxylate membrane transporter SH07_RS02290 PF10415 Fumarase C C-terminus SH07_RS02290 PF00206 Lyase SH07_RS02295 PF04186 FxsA cytoplasmic membrane protein SH07_RS02300 PF13520 Amino acid permease SH07_RS02305 PF00166 Chaperonin 10 Kd subunit SH07_RS02310 PF00118 TCP-1/cpn60 chaperonin family SH07_RS02315 PF13698 Domain of unknown function (DUF4156) SH07_RS02320 PF15922 YjeJ-like SH07_RS02325 PF04055 Radical SAM superfamily SH07_RS02330 PF01132 Elongation factor P (EF-P) OB domain SH07_RS02330 PF08207 Elongation factor P (EF-P) KOW-like domain SH07_RS02330 PF09285 Elongation factor P, C-terminal SH07_RS02335 PF08085 Entericidin EcnA/B family SH07_RS02340 PF08085 Entericidin EcnA/B family SH07_RS02345 PF00893 Small Multidrug Resistance protein SH07_RS02350 PF08212 Lipocalin-like domain SH07_RS02355 PF00144 Beta-lactamase SH07_RS02360 PF02313 Fumarate reductase subunit D SH07_RS02365 PF02300 Fumarate reductase subunit C SH07_RS02370 PF13085 2Fe-2S iron-sulfur cluster binding domain SH07_RS02370 PF13183 4Fe-4S dicluster domain SH07_RS02375 PF00890 FAD binding domain SH07_RS02375 PF02910 Fumarate reductase flavoprotein C-term SH07_RS02380 PF00152 tRNA synthetases class II (D, K and N) SH07_RS02385 PF13520 Amino acid permease SH07_RS02395 PF10840 Protein of unknown function (DUF2645) SH07_RS02400 PF00924 Mechanosensitive ion channel SH07_RS02400 PF12795 Mechanosensitive ion channel porin domain SH07_RS02400 PF12794 Mechanosensitive ion channel inner membrane domain 1 SH07_RS02405 PF02666 Phosphatidylserine decarboxylase SH07_RS02410 PF03193 RsgA GTPase SH07_RS02415 PF00929 Exonuclease SH07_RS02435 PF08331 Domain of unknown function (DUF1730) SH07_RS02440 PF01256 Carbohydrate kinase SH07_RS02440 PF03853 YjeF-related protein N-terminus SH07_RS02445 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SH07_RS02450 PF01520 N-acetylmuramoyl-L-alanine amidase SH07_RS02455 PF01119 DNA mismatch repair protein, C-terminal domain SH07_RS02455 PF08676 MutL C terminal dimerisation domain SH07_RS02465 PF17209 Hfq protein SH07_RS02470 PF16360 GTP-binding GTPase Middle Region SH07_RS02470 PF13167 GTP-binding GTPase N-terminal SH07_RS02470 PF01926 50S ribosome-binding GTPase SH07_RS02475 PF12221 Bacterial membrane protein N terminal SH07_RS02475 PF01145 SPFH domain / Band 7 family SH07_RS02480 PF01145 SPFH domain / Band 7 family SH07_RS02485 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) SH07_RS02490 PF00709 Adenylosuccinate synthetase SH07_RS02495 PF02082 Transcriptional regulator SH07_RS02500 PF17876 Cold shock domain SH07_RS02500 PF08206 Ribonuclease B OB domain SH07_RS02500 PF00773 RNB domain SH07_RS02500 PF08461 Ribonuclease R winged-helix domain SH07_RS02500 PF00575 S1 RNA binding domain SH07_RS02505 PF00588 SpoU rRNA Methylase family SH07_RS02505 PF08032 RNA 2'-O ribose methyltransferase substrate binding SH07_RS02510 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) SH07_RS02515 PF04012 PspA/IM30 family SH07_RS02520 PF10679 Protein of unknown function (DUF2491) SH07_RS02525 PF03994 Domain of Unknown Function (DUF350) SH07_RS02530 PF06693 Protein of unknown function (DUF1190) SH07_RS02535 PF03738 Glutathionylspermidine synthase preATP-grasp SH07_RS02540 PF18158 Adaptive response protein AidB N-terminal domain SH07_RS02540 PF02770 Acyl-CoA dehydrogenase, middle domain SH07_RS02540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH07_RS02545 PF07338 Protein of unknown function (DUF1471) SH07_RS02550 PF07338 Protein of unknown function (DUF1471) SH07_RS02555 PF00326 Prolyl oligopeptidase family SH07_RS02560 PF00455 DeoR C terminal sensor domain SH07_RS02560 PF08220 DeoR-like helix-turn-helix domain SH07_RS02570 PF03611 PTS system sugar-specific permease component SH07_RS02575 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH07_RS02580 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH07_RS02585 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH07_RS02590 PF01261 Xylose isomerase-like TIM barrel SH07_RS02595 PF00596 Class II Aldolase and Adducin N-terminal domain SH07_RS02600 PF07338 Protein of unknown function (DUF1471) SH07_RS02610 PF01250 Ribosomal protein S6 SH07_RS02615 PF00436 Single-strand binding protein family SH07_RS02620 PF01084 Ribosomal protein S18 SH07_RS02625 PF03948 Ribosomal protein L9, C-terminal domain SH07_RS02625 PF01281 Ribosomal protein L9, N-terminal domain SH07_RS02630 PF10887 Protein of unknown function (DUF2686) SH07_RS02635 PF17938 Tetracyclin repressor-like, C-terminal domain SH07_RS02640 PF04225 Opacity-associated protein A LysM-like domain SH07_RS02640 PF08525 Opacity-associated protein A N-terminal motif SH07_RS02645 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH07_RS02645 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SH07_RS02650 PF00324 Amino acid permease SH07_RS02655 PF01814 Hemerythrin HHE cation binding domain SH07_RS02655 PF04405 Domain of Unknown function (DUF542) SH07_RS02660 PF00892 EamA-like transporter family SH07_RS02665 PF05368 NmrA-like family SH07_RS02670 PF01638 HxlR-like helix-turn-helix SH07_RS02675 PF02872 5'-nucleotidase, C-terminal domain SH07_RS02675 PF00149 Calcineurin-like phosphoesterase SH07_RS02680 PF00459 Inositol monophosphatase family SH07_RS02690 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) SH07_RS02695 PF06526 Protein of unknown function (DUF1107) SH07_RS02700 PF03471 Transporter associated domain SH07_RS02700 PF01595 Cyclin M transmembrane N-terminal domain SH07_RS02700 PF00571 CBS domain SH07_RS02705 PF01625 Peptide methionine sulfoxide reductase SH07_RS02715 PF07244 Surface antigen variable number repeat SH07_RS02715 PF01103 Surface antigen SH07_RS02715 PF17243 POTRA domain TamA domain 1 SH07_RS02720 PF04357 TamB, inner membrane protein subunit of TAM complex SH07_RS02725 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like SH07_RS02730 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SH07_RS02735 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SH07_RS02740 PF00719 Inorganic pyrophosphatase SH07_RS02745 PF13407 Periplasmic binding protein domain SH07_RS02750 PF00005 ABC transporter SH07_RS02755 PF02653 Branched-chain amino acid transport system / permease component SH07_RS02760 PF02653 Branched-chain amino acid transport system / permease component SH07_RS02765 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SH07_RS02770 PF01225 Mur ligase family, catalytic domain SH07_RS02770 PF08245 Mur ligase middle domain SH07_RS02770 PF02875 Mur ligase family, glutamate ligase domain SH07_RS02775 PF04751 Protein of unknown function (DUF615) SH07_RS02780 PF01523 Putative modulator of DNA gyrase SH07_RS02785 PF07361 Cytochrome b562 SH07_RS02795 PF13597 Anaerobic ribonucleoside-triphosphate reductase SH07_RS02795 PF03477 ATP cone domain SH07_RS02800 PF00128 Alpha amylase, catalytic domain SH07_RS02800 PF11941 Domain of unknown function (DUF3459) SH07_RS02805 PF00367 phosphotransferase system, EIIB SH07_RS02805 PF02378 Phosphotransferase system, EIIC SH07_RS02810 PF00356 Bacterial regulatory proteins, lacI family SH07_RS02815 PF00690 Cation transporter/ATPase, N-terminus SH07_RS02815 PF00689 Cation transporting ATPase, C-terminus SH07_RS02820 PF01042 Endoribonuclease L-PSP SH07_RS02825 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain SH07_RS02825 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain SH07_RS02830 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH07_RS02830 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH07_RS02835 PF08052 PyrBI operon leader peptide SH07_RS02845 PF01042 Endoribonuclease L-PSP SH07_RS02855 PF00440 Bacterial regulatory proteins, tetR family SH07_RS02860 PF04074 YhcH/YjgK/YiaL SH07_RS02870 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH07_RS02870 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH07_RS02875 PF06877 Regulator of ribonuclease activity B SH07_RS02880 PF00583 Acetyltransferase (GNAT) family SH07_RS02885 PF05987 Bacterial protein of unknown function (DUF898) SH07_RS02890 PF00133 tRNA synthetases class I (I, L, M and V) SH07_RS02890 PF10458 Valyl tRNA synthetase tRNA binding arm SH07_RS02890 PF08264 Anticodon-binding domain of tRNA SH07_RS02895 PF04364 DNA polymerase III chi subunit, HolC SH07_RS02900 PF00883 Cytosol aminopeptidase family, catalytic domain SH07_RS02900 PF02789 Cytosol aminopeptidase family, N-terminal domain SH07_RS02905 PF03739 Lipopolysaccharide export system permease LptF/LptG SH07_RS02910 PF03739 Lipopolysaccharide export system permease LptF/LptG SH07_RS02915 PF05872 Bacterial protein of unknown function (DUF853) SH07_RS02920 PF00356 Bacterial regulatory proteins, lacI family SH07_RS02925 PF02447 GntP family permease SH07_RS02930 PF00106 short chain dehydrogenase SH07_RS02935 PF00107 Zinc-binding dehydrogenase SH07_RS02935 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS02940 PF01202 Shikimate kinase SH07_RS02945 PF00107 Zinc-binding dehydrogenase SH07_RS02945 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS02955 PF00589 Phage integrase family SH07_RS02955 PF13356 Arm DNA-binding domain SH07_RS02965 PF01527 Transposase SH07_RS02970 PF13276 HTH-like domain SH07_RS02970 PF00665 Integrase core domain SH07_RS03000 PF01609 Transposase DDE domain SH07_RS03000 PF13006 Insertion element 4 transposase N-terminal SH07_RS03005 PF07690 Major Facilitator Superfamily SH07_RS03010 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH07_RS03010 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH07_RS03015 PF16747 Surface-adhesin protein E SH07_RS03020 PF11700 Vacuole effluxer Atg22 like SH07_RS03025 PF01527 Transposase SH07_RS03030 PF13936 Helix-turn-helix domain SH07_RS03030 PF00665 Integrase core domain SH07_RS03035 PF01527 Transposase SH07_RS03050 PF00005 ABC transporter SH07_RS03055 PF01032 FecCD transport family SH07_RS03060 PF01032 FecCD transport family SH07_RS03065 PF01497 Periplasmic binding protein SH07_RS03070 PF07715 TonB-dependent Receptor Plug Domain SH07_RS03070 PF07660 Secretin and TonB N terminus short domain SH07_RS03070 PF00593 TonB dependent receptor SH07_RS03075 PF04773 FecR protein SH07_RS03075 PF16220 Domain of unknown function (DUF4880) SH07_RS03080 PF08281 Sigma-70, region 4 SH07_RS03080 PF04542 Sigma-70 region 2 SH07_RS03095 PF03400 IS1 transposase SH07_RS03100 PF04198 Putative sugar-binding domain SH07_RS03110 PF02447 GntP family permease SH07_RS03115 PF00920 Dehydratase family SH07_RS03120 PF00701 Dihydrodipicolinate synthetase family SH07_RS03125 PF01614 Bacterial transcriptional regulator SH07_RS03130 PF00455 DeoR C terminal sensor domain SH07_RS03130 PF08220 DeoR-like helix-turn-helix domain SH07_RS03135 PF00834 Ribulose-phosphate 3 epimerase family SH07_RS03140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH07_RS03145 PF03437 BtpA family SH07_RS03150 PF03611 PTS system sugar-specific permease component SH07_RS03155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH07_RS03160 PF05343 M42 glutamyl aminopeptidase SH07_RS03165 PF13847 Methyltransferase domain SH07_RS03170 PF00583 Acetyltransferase (GNAT) family SH07_RS03175 PF09857 Putative toxin of bacterial toxin-antitoxin pair SH07_RS03190 PF13091 PLD-like domain SH07_RS03190 PF13087 AAA domain SH07_RS03195 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase SH07_RS03205 PF06178 Oligogalacturonate-specific porin protein (KdgM) SH07_RS03220 PF00589 Phage integrase family SH07_RS03225 PF03400 IS1 transposase SH07_RS03230 PF00589 Phage integrase family SH07_RS03240 PF00419 Fimbrial protein SH07_RS03245 PF00419 Fimbrial protein SH07_RS03250 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH07_RS03250 PF02753 Pili assembly chaperone PapD, C-terminal domain SH07_RS03255 PF13953 PapC C-terminal domain SH07_RS03255 PF13954 PapC N-terminal domain SH07_RS03255 PF00577 Outer membrane usher protein SH07_RS03260 PF00419 Fimbrial protein SH07_RS03270 PF09160 FimH, mannose binding SH07_RS03270 PF00419 Fimbrial protein SH07_RS03275 PF02447 GntP family permease SH07_RS03285 PF03786 D-mannonate dehydratase (UxuA) SH07_RS03290 PF08125 Mannitol dehydrogenase C-terminal domain SH07_RS03290 PF01232 Mannitol dehydrogenase Rossmann domain SH07_RS03300 PF00392 Bacterial regulatory proteins, gntR family SH07_RS03300 PF07729 FCD domain SH07_RS03305 PF10887 Protein of unknown function (DUF2686) SH07_RS03320 PF04965 Gene 25-like lysozyme SH07_RS03325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS03325 PF03466 LysR substrate binding domain SH07_RS03330 PF01979 Amidohydrolase family SH07_RS03335 PF07670 Nucleoside recognition SH07_RS03340 PF07670 Nucleoside recognition SH07_RS03345 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family SH07_RS03350 PF06779 Uncharacterised MFS-type transporter YbfB SH07_RS03355 PF06977 SdiA-regulated SH07_RS03360 PF11823 Protein of unknown function (DUF3343) SH07_RS03365 PF01869 BadF/BadG/BcrA/BcrD ATPase family SH07_RS03370 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SH07_RS03375 PF04286 Protein of unknown function (DUF445) SH07_RS03380 PF07690 Major Facilitator Superfamily SH07_RS03390 PF00392 Bacterial regulatory proteins, gntR family SH07_RS03390 PF00155 Aminotransferase class I and II SH07_RS03395 PF06568 Domain of unknown function (DUF1127) SH07_RS03410 PF10117 McrBC 5-methylcytosine restriction system component SH07_RS03415 PF07728 AAA domain (dynein-related subfamily) SH07_RS03415 PF12102 Domain of unknown function (DUF3578) SH07_RS03420 PF08845 Toxin SymE, type I toxin-antitoxin system SH07_RS03425 PF01420 Type I restriction modification DNA specificity domain SH07_RS03430 PF02384 N-6 DNA Methylase SH07_RS03435 PF08463 EcoEI R protein C-terminal SH07_RS03435 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SH07_RS03435 PF04851 Type III restriction enzyme, res subunit SH07_RS03435 PF00271 Helicase conserved C-terminal domain SH07_RS03440 PF07690 Major Facilitator Superfamily SH07_RS03445 PF02909 Tetracyclin repressor-like, C-terminal domain SH07_RS03445 PF00440 Bacterial regulatory proteins, tetR family SH07_RS03450 PF14338 Mrr N-terminal domain SH07_RS03450 PF04471 Restriction endonuclease SH07_RS03455 PF07683 Cobalamin synthesis protein cobW C-terminal domain SH07_RS03455 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH07_RS03460 PF04328 Selenoprotein, putative SH07_RS03465 PF02554 Carbon starvation protein CstA SH07_RS03465 PF13722 5TM C-terminal transporter carbon starvation CstA SH07_RS03475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH07_RS03475 PF02203 Tar ligand binding domain homologue SH07_RS03475 PF00672 HAMP domain SH07_RS03480 PF07690 Major Facilitator Superfamily SH07_RS03485 PF00392 Bacterial regulatory proteins, gntR family SH07_RS03485 PF07729 FCD domain SH07_RS03490 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS03490 PF00107 Zinc-binding dehydrogenase SH07_RS03495 PF00884 Sulfatase SH07_RS03500 PF10696 Protein of unknown function (DUF2501) SH07_RS03505 PF01695 IstB-like ATP binding protein SH07_RS03510 PF17948 DnaT DNA-binding domain SH07_RS03515 PF12821 Threonine/Serine exporter, ThrE SH07_RS03520 PF06738 Putative threonine/serine exporter SH07_RS03525 PF00196 Bacterial regulatory proteins, luxR family SH07_RS03530 PF00196 Bacterial regulatory proteins, luxR family SH07_RS03535 PF06276 Ferric iron reductase FhuF-like transporter SH07_RS03535 PF11575 FhuF 2Fe-2S C-terminal domain SH07_RS03540 PF07256 Protein of unknown function (DUF1435) SH07_RS03560 PF05175 Methyltransferase small domain SH07_RS03560 PF08468 Methyltransferase small domain N-terminal SH07_RS03565 PF03603 DNA polymerase III psi subunit SH07_RS03570 PF00583 Acetyltransferase (GNAT) family SH07_RS03575 PF13419 Haloacid dehalogenase-like hydrolase SH07_RS03580 PF03144 Elongation factor Tu domain 2 SH07_RS03580 PF00009 Elongation factor Tu GTP binding domain SH07_RS03580 PF16658 Class II release factor RF3, C-terminal domain SH07_RS03585 PF04972 BON domain SH07_RS03590 PF07043 Protein of unknown function (DUF1328) SH07_RS03595 PF01734 Patatin-like phospholipase SH07_RS03600 PF01026 TatD related DNase SH07_RS03605 PF04055 Radical SAM superfamily SH07_RS03610 PF11230 Protein of unknown function (DUF3029) SH07_RS03620 PF01791 DeoC/LacD family aldolase SH07_RS03625 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SH07_RS03625 PF00591 Glycosyl transferase family, a/b domain SH07_RS03625 PF02885 Glycosyl transferase family, helical bundle domain SH07_RS03630 PF01676 Metalloenzyme superfamily SH07_RS03635 PF01048 Phosphorylase superfamily SH07_RS03640 PF07804 HipA-like C-terminal domain SH07_RS03645 PF10437 Bacterial lipoate protein ligase C-terminus SH07_RS03645 PF03099 Biotin/lipoate A/B protein ligase family SH07_RS03650 PF10144 Bacterial virulence factor haemolysin SH07_RS03655 PF18429 Domain of unknown function (DUF5609) SH07_RS03660 PF18073 Rubredoxin metal binding domain SH07_RS03665 PF01381 Helix-turn-helix SH07_RS03665 PF13521 AAA domain SH07_RS03675 PF12848 ABC transporter SH07_RS03675 PF00005 ABC transporter SH07_RS03680 PF01464 Transglycosylase SLT domain SH07_RS03680 PF14718 Soluble lytic murein transglycosylase L domain SH07_RS03685 PF01371 Trp repressor protein SH07_RS03690 PF01931 Protein of unknown function DUF84 SH07_RS03695 PF00300 Histidine phosphatase superfamily (branch 1) SH07_RS03700 PF06445 GyrI-like small molecule binding domain SH07_RS03700 PF12833 Helix-turn-helix domain SH07_RS03705 PF05981 CreA protein SH07_RS03710 PF00486 Transcriptional regulatory protein, C terminal SH07_RS03710 PF00072 Response regulator receiver domain SH07_RS03715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS03715 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS03715 PF00672 HAMP domain SH07_RS03720 PF06123 Inner membrane protein CreD SH07_RS03725 PF00072 Response regulator receiver domain SH07_RS03725 PF00486 Transcriptional regulatory protein, C terminal SH07_RS03735 PF00588 SpoU rRNA Methylase family SH07_RS03740 PF08254 Threonine leader peptide SH07_RS03745 PF01842 ACT domain SH07_RS03745 PF00696 Amino acid kinase family SH07_RS03745 PF13840 ACT domain SH07_RS03745 PF00742 Homoserine dehydrogenase SH07_RS03745 PF03447 Homoserine dehydrogenase, NAD binding domain SH07_RS03750 PF00288 GHMP kinases N terminal domain SH07_RS03750 PF08544 GHMP kinases C terminal SH07_RS03755 PF00291 Pyridoxal-phosphate dependent enzyme SH07_RS03755 PF14821 Threonine synthase N terminus SH07_RS03765 PF10697 Protein of unknown function (DUF2502) SH07_RS03770 PF03883 Peroxide stress protein YaaA SH07_RS03775 PF01235 Sodium:alanine symporter family SH07_RS03780 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH07_RS03785 PF00994 Probable molybdopterin binding domain SH07_RS03790 PF01184 GPR1/FUN34/yaaH family SH07_RS03795 PF03981 Ubiquinol-cytochrome C chaperone SH07_RS03795 PF13099 Domain of unknown function (DUF3944) SH07_RS03800 PF10807 Protein of unknown function (DUF2541) SH07_RS03805 PF00012 Hsp70 protein SH07_RS03810 PF01556 DnaJ C terminal domain SH07_RS03810 PF00684 DnaJ central domain SH07_RS03810 PF00226 DnaJ domain SH07_RS03815 PF01609 Transposase DDE domain SH07_RS03820 PF01848 Hok/gef family SH07_RS03825 PF06965 Na+/H+ antiporter 1 SH07_RS03830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS03830 PF03466 LysR substrate binding domain SH07_RS03835 PF03400 IS1 transposase SH07_RS03840 PF01649 Ribosomal protein S20 SH07_RS03845 PF10837 Protein of unknown function (DUF2575) SH07_RS03850 PF06574 FAD synthetase SH07_RS03850 PF01687 Riboflavin kinase SH07_RS03855 PF06827 Zinc finger found in FPG and IleRS SH07_RS03855 PF00133 tRNA synthetases class I (I, L, M and V) SH07_RS03855 PF08264 Anticodon-binding domain of tRNA SH07_RS03860 PF01252 Signal peptidase (SPase) II SH07_RS03865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH07_RS03870 PF02401 LytB protein SH07_RS03875 PF01156 Inosine-uridine preferring nucleoside hydrolase SH07_RS03880 PF05173 Dihydrodipicolinate reductase, C-terminus SH07_RS03880 PF01113 Dihydrodipicolinate reductase, N-terminus SH07_RS03895 PF00117 Glutamine amidotransferase class-I SH07_RS03895 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SH07_RS03900 PF02142 MGS-like domain SH07_RS03900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH07_RS03900 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SH07_RS03910 PF07180 CaiF/GrlA transcriptional regulator SH07_RS03915 PF00132 Bacterial transferase hexapeptide (six repeats) SH07_RS03920 PF00378 Enoyl-CoA hydratase/isomerase SH07_RS03925 PF00501 AMP-binding enzyme SH07_RS03925 PF13193 AMP-binding enzyme C-terminal domain SH07_RS03930 PF02515 CoA-transferase family III SH07_RS03935 PF02770 Acyl-CoA dehydrogenase, middle domain SH07_RS03935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH07_RS03935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH07_RS03940 PF02028 BCCT, betaine/carnitine/choline family transporter SH07_RS03945 PF01012 Electron transfer flavoprotein domain SH07_RS03950 PF01012 Electron transfer flavoprotein domain SH07_RS03950 PF00766 Electron transfer flavoprotein FAD-binding domain SH07_RS03955 PF01494 FAD binding domain SH07_RS03965 PF00083 Sugar (and other) transporter SH07_RS03970 PF02525 Flavodoxin-like fold SH07_RS03975 PF02254 TrkA-N domain SH07_RS03975 PF00999 Sodium/hydrogen exchanger family SH07_RS03980 PF00186 Dihydrofolate reductase SH07_RS03985 PF00149 Calcineurin-like phosphoesterase SH07_RS03990 PF04379 ApaG domain SH07_RS03995 PF00398 Ribosomal RNA adenine dimethylase SH07_RS04000 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SH07_RS04005 PF09312 SurA N-terminal domain SH07_RS04005 PF00639 PPIC-type PPIASE domain SH07_RS04010 PF04453 LPS transport system D SH07_RS04010 PF03968 OstA-like protein SH07_RS04015 PF05099 Tellurite resistance protein TerB SH07_RS04015 PF00226 DnaJ domain SH07_RS04025 PF00849 RNA pseudouridylate synthase SH07_RS04030 PF18337 RapA N-terminal Tudor like domain SH07_RS04030 PF12137 RNA polymerase recycling family C-terminal SH07_RS04030 PF00176 SNF2 family N-terminal domain SH07_RS04030 PF18339 RapA N-terminal Tudor like domain 1 SH07_RS04030 PF00271 Helicase conserved C-terminal domain SH07_RS04035 PF03104 DNA polymerase family B, exonuclease domain SH07_RS04035 PF00136 DNA polymerase family B SH07_RS04040 PF00596 Class II Aldolase and Adducin N-terminal domain SH07_RS04045 PF11762 L-arabinose isomerase C-terminal domain SH07_RS04045 PF02610 L-arabinose isomerase SH07_RS04050 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH07_RS04055 PF02311 AraC-like ligand binding domain SH07_RS04055 PF12833 Helix-turn-helix domain SH07_RS04060 PF09335 SNARE associated Golgi protein SH07_RS04065 PF00005 ABC transporter SH07_RS04070 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS04080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH07_RS04080 PF12793 Sugar transport-related sRNA regulator N-term SH07_RS04090 PF07690 Major Facilitator Superfamily SH07_RS04095 PF00694 Aconitase C-terminal domain SH07_RS04100 PF00330 Aconitase family (aconitate hydratase) SH07_RS04105 PF00180 Isocitrate/isopropylmalate dehydrogenase SH07_RS04110 PF08502 LeuA allosteric (dimerisation) domain SH07_RS04110 PF00682 HMGL-like SH07_RS04115 PF08054 Leucine operon leader peptide SH07_RS04120 PF03466 LysR substrate binding domain SH07_RS04120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS04125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH07_RS04125 PF00205 Thiamine pyrophosphate enzyme, central domain SH07_RS04125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH07_RS04130 PF10369 Small subunit of acetolactate synthase SH07_RS04140 PF00356 Bacterial regulatory proteins, lacI family SH07_RS04140 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH07_RS04145 PF02381 MraZ protein, putative antitoxin-like SH07_RS04150 PF01795 MraW methylase family SH07_RS04155 PF04999 Cell division protein FtsL SH07_RS04160 PF03717 Penicillin-binding Protein dimerisation domain SH07_RS04160 PF00905 Penicillin binding protein transpeptidase domain SH07_RS04165 PF08245 Mur ligase middle domain SH07_RS04165 PF01225 Mur ligase family, catalytic domain SH07_RS04165 PF02875 Mur ligase family, glutamate ligase domain SH07_RS04170 PF01225 Mur ligase family, catalytic domain SH07_RS04170 PF02875 Mur ligase family, glutamate ligase domain SH07_RS04170 PF08245 Mur ligase middle domain SH07_RS04175 PF00953 Glycosyl transferase family 4 SH07_RS04175 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SH07_RS04180 PF08245 Mur ligase middle domain SH07_RS04180 PF02875 Mur ligase family, glutamate ligase domain SH07_RS04185 PF01098 Cell cycle protein SH07_RS04190 PF04101 Glycosyltransferase family 28 C-terminal domain SH07_RS04190 PF03033 Glycosyltransferase family 28 N-terminal domain SH07_RS04195 PF08245 Mur ligase middle domain SH07_RS04195 PF01225 Mur ligase family, catalytic domain SH07_RS04195 PF02875 Mur ligase family, glutamate ligase domain SH07_RS04200 PF07478 D-ala D-ala ligase C-terminus SH07_RS04200 PF01820 D-ala D-ala ligase N-terminus SH07_RS04205 PF03799 Cell division protein FtsQ SH07_RS04205 PF08478 POTRA domain, FtsQ-type SH07_RS04210 PF02491 SHS2 domain inserted in FTSA SH07_RS04215 PF00091 Tubulin/FtsZ family, GTPase domain SH07_RS04215 PF12327 FtsZ family, C-terminal domain SH07_RS04220 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SH07_RS04225 PF06558 Secretion monitor precursor protein (SecM) SH07_RS04230 PF01043 SecA preprotein cross-linking domain SH07_RS04230 PF07516 SecA Wing and Scaffold domain SH07_RS04230 PF02810 SEC-C motif SH07_RS04230 PF07517 SecA DEAD-like domain SH07_RS04235 PF00293 NUDIX domain SH07_RS04245 PF03884 DNA gyrase inhibitor YacG SH07_RS04250 PF07072 Cell division protein SH07_RS04255 PF01121 Dephospho-CoA kinase SH07_RS04260 PF00478 IMP dehydrogenase / GMP reductase domain SH07_RS04265 PF00482 Type II secretion system (T2SS), protein F SH07_RS04270 PF00437 Type II/IV secretion system protein SH07_RS04270 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SH07_RS04275 PF07963 Prokaryotic N-terminal methylation motif SH07_RS04285 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SH07_RS04285 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SH07_RS04290 PF01510 N-acetylmuramoyl-L-alanine amidase SH07_RS04295 PF17113 Regulatory signalling modulator protein AmpE SH07_RS04300 PF00324 Amino acid permease SH07_RS04305 PF07729 FCD domain SH07_RS04305 PF00392 Bacterial regulatory proteins, gntR family SH07_RS04310 PF00456 Transketolase, thiamine diphosphate binding domain SH07_RS04310 PF17831 Pyruvate dehydrogenase E1 component middle domain SH07_RS04315 PF02817 e3 binding domain SH07_RS04315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH07_RS04315 PF00364 Biotin-requiring enzyme SH07_RS04320 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH07_RS04320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH07_RS04325 PF11737 Protein of unknown function (DUF3300) SH07_RS04330 PF06434 Aconitate hydratase 2 N-terminus SH07_RS04330 PF11791 Aconitate B N-terminal domain SH07_RS04330 PF00330 Aconitase family (aconitate hydratase) SH07_RS04335 PF06062 Uncharacterised protein family (UPF0231) SH07_RS04340 PF02675 S-adenosylmethionine decarboxylase SH07_RS04345 PF17284 Spermidine synthase tetramerisation domain SH07_RS04350 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) SH07_RS04355 PF07731 Multicopper oxidase SH07_RS04355 PF07732 Multicopper oxidase SH07_RS04355 PF00394 Multicopper oxidase SH07_RS04360 PF01011 PQQ enzyme repeat SH07_RS04365 PF00156 Phosphoribosyl transferase domain SH07_RS04370 PF00484 Carbonic anhydrase SH07_RS04375 PF00005 ABC transporter SH07_RS04380 PF01061 ABC-2 type transporter SH07_RS04385 PF03610 PTS system fructose IIA component SH07_RS04390 PF01522 Polysaccharide deacetylase SH07_RS04395 PF02261 Aspartate decarboxylase SH07_RS04400 PF04754 Putative transposase, YhgA-like SH07_RS04405 PF02569 Pantoate-beta-alanine ligase SH07_RS04410 PF02548 Ketopantoate hydroxymethyltransferase SH07_RS04415 PF00419 Fimbrial protein SH07_RS04420 PF00419 Fimbrial protein SH07_RS04425 PF00419 Fimbrial protein SH07_RS04430 PF00419 Fimbrial protein SH07_RS04435 PF13954 PapC N-terminal domain SH07_RS04435 PF13953 PapC C-terminal domain SH07_RS04435 PF00577 Outer membrane usher protein SH07_RS04440 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH07_RS04440 PF02753 Pili assembly chaperone PapD, C-terminal domain SH07_RS04445 PF00419 Fimbrial protein SH07_RS04450 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SH07_RS04455 PF12626 Polymerase A arginine-rich C-terminus SH07_RS04455 PF01743 Poly A polymerase head domain SH07_RS04455 PF12627 Probable RNA and SrmB- binding site of polymerase A SH07_RS04460 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH07_RS04465 PF01258 Prokaryotic dksA/traR C4-type zinc finger SH07_RS04470 PF03749 Sugar fermentation stimulation protein RE domain SH07_RS04470 PF17746 SfsA N-terminal OB domain SH07_RS04475 PF02834 LigT like Phosphoesterase SH07_RS04480 PF00271 Helicase conserved C-terminal domain SH07_RS04480 PF04408 Helicase associated domain (HA2) SH07_RS04480 PF08482 ATP-dependent helicase C-terminal SH07_RS04480 PF00270 DEAD/DEAH box helicase SH07_RS04490 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal SH07_RS04490 PF00912 Transglycosylase SH07_RS04490 PF00905 Penicillin binding protein transpeptidase domain SH07_RS04490 PF14814 Bifunctional transglycosylase second domain SH07_RS04495 PF07715 TonB-dependent Receptor Plug Domain SH07_RS04495 PF00593 TonB dependent receptor SH07_RS04500 PF00005 ABC transporter SH07_RS04505 PF01497 Periplasmic binding protein SH07_RS04510 PF01032 FecCD transport family SH07_RS04515 PF00202 Aminotransferase class-III SH07_RS04520 PF00654 Voltage gated chloride channel SH07_RS04525 PF01521 Iron-sulphur cluster biosynthesis SH07_RS04530 PF03458 UPF0126 domain SH07_RS04535 PF01497 Periplasmic binding protein SH07_RS04540 PF01048 Phosphorylase superfamily SH07_RS04545 PF13286 Phosphohydrolase-associated domain SH07_RS04545 PF01966 HD domain SH07_RS04550 PF00595 PDZ domain SH07_RS04555 PF17853 GGDEF-like domain SH07_RS04555 PF05651 Putative sugar diacid recognition SH07_RS04555 PF13556 PucR C-terminal helix-turn-helix domain SH07_RS04560 PF11944 Protein of unknown function (DUF3461) SH07_RS04565 PF00149 Calcineurin-like phosphoesterase SH07_RS04570 PF00132 Bacterial transferase hexapeptide (six repeats) SH07_RS04570 PF14602 Hexapeptide repeat of succinyl-transferase SH07_RS04570 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal SH07_RS04575 PF08335 GlnD PII-uridylyltransferase SH07_RS04575 PF01842 ACT domain SH07_RS04575 PF01909 Nucleotidyltransferase domain SH07_RS04575 PF01966 HD domain SH07_RS04580 PF00557 Metallopeptidase family M24 SH07_RS04585 PF00318 Ribosomal protein S2 SH07_RS04590 PF00889 Elongation factor TS SH07_RS04595 PF00696 Amino acid kinase family SH07_RS04600 PF01765 Ribosome recycling factor SH07_RS04605 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SH07_RS04605 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SH07_RS04605 PF13288 DXP reductoisomerase C-terminal domain SH07_RS04610 PF01255 Putative undecaprenyl diphosphate synthase SH07_RS04620 PF17820 PDZ domain SH07_RS04620 PF02163 Peptidase family M50 SH07_RS04625 PF01103 Surface antigen SH07_RS04625 PF07244 Surface antigen variable number repeat SH07_RS04630 PF03938 Outer membrane protein (OmpH-like) SH07_RS04635 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SH07_RS04635 PF00132 Bacterial transferase hexapeptide (six repeats) SH07_RS04640 PF07977 FabA-like domain SH07_RS04645 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SH07_RS04645 PF00132 Bacterial transferase hexapeptide (six repeats) SH07_RS04650 PF02684 Lipid-A-disaccharide synthetase SH07_RS04655 PF01351 Ribonuclease HII SH07_RS04660 PF07733 Bacterial DNA polymerase III alpha NTPase domain SH07_RS04660 PF14579 Helix-hairpin-helix motif SH07_RS04660 PF02811 PHP domain SH07_RS04660 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SH07_RS04660 PF01336 OB-fold nucleic acid binding domain SH07_RS04665 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SH07_RS04670 PF01276 Orn/Lys/Arg decarboxylase, major domain SH07_RS04670 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH07_RS04670 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH07_RS04675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH07_RS04680 PF01171 PP-loop family SH07_RS04680 PF09179 TilS substrate binding domain SH07_RS04680 PF11734 TilS substrate C-terminal domain SH07_RS04685 PF07073 Modulator of Rho-dependent transcription termination (ROF) SH07_RS04690 PF06786 Uncharacterised protein family (UPF0253) SH07_RS04695 PF07152 YaeQ protein SH07_RS04700 PF00472 RF-1 domain SH07_RS04705 PF17185 NlpE C-terminal OB domain SH07_RS04705 PF04170 NlpE N-terminal domain SH07_RS04710 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH07_RS04715 PF04073 Aminoacyl-tRNA editing domain SH07_RS04715 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH07_RS04715 PF03129 Anticodon binding domain SH07_RS04720 PF01980 tRNA-methyltransferase O SH07_RS04720 PF18389 TrmO C-terminal domain SH07_RS04725 PF16358 RcsF lipoprotein SH07_RS04730 PF03180 NLPA lipoprotein SH07_RS04735 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS04740 PF09383 NIL domain SH07_RS04740 PF00005 ABC transporter SH07_RS04780 PF00248 Aldo/keto reductase family SH07_RS04785 PF03466 LysR substrate binding domain SH07_RS04785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS04790 PF03372 Endonuclease/Exonuclease/phosphatase family SH07_RS04795 PF08241 Methyltransferase domain SH07_RS04800 PF01464 Transglycosylase SLT domain SH07_RS04800 PF01476 LysM domain SH07_RS04805 PF16123 Hydroxyacylglutathione hydrolase C-terminus SH07_RS04805 PF00753 Metallo-beta-lactamase superfamily SH07_RS04810 PF08241 Methyltransferase domain SH07_RS04815 PF00075 RNase H SH07_RS04820 PF00929 Exonuclease SH07_RS04845 PF13808 DDE_Tnp_1-associated SH07_RS04845 PF01609 Transposase DDE domain SH07_RS04850 PF00795 Carbon-nitrogen hydrolase SH07_RS04860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH07_RS04860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH07_RS04860 PF09317 Domain of unknown function (DUF1974) SH07_RS04860 PF02770 Acyl-CoA dehydrogenase, middle domain SH07_RS04865 PF13580 SIS domain SH07_RS04870 PF13230 Glutamine amidotransferases class-II SH07_RS04875 PF03734 L,D-transpeptidase catalytic domain SH07_RS04880 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ SH07_RS04885 PF04221 RelB antitoxin SH07_RS04890 PF00877 NlpC/P60 family SH07_RS04900 PF00771 FHIPEP family SH07_RS04905 PF13677 Membrane MotB of proton-channel complex MotA/MotB SH07_RS04905 PF00691 OmpA family SH07_RS04910 PF11798 IMS family HHH motif SH07_RS04910 PF11799 impB/mucB/samB family C-terminal domain SH07_RS04910 PF00817 impB/mucB/samB family SH07_RS04920 PF13957 Toxin YafO, type II toxin-antitoxin system SH07_RS04925 PF13673 Acetyltransferase (GNAT) domain SH07_RS04935 PF00472 RF-1 domain SH07_RS04940 PF07687 Peptidase dimerisation domain SH07_RS04940 PF01546 Peptidase family M20/M25/M40 SH07_RS04945 PF00156 Phosphoribosyl transferase domain SH07_RS04950 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) SH07_RS04955 PF07417 Sigma factor-binding transcriptional regulator Crl SH07_RS04960 PF00267 Gram-negative porin SH07_RS04965 PF01472 PUA domain SH07_RS04965 PF00696 Amino acid kinase family SH07_RS04970 PF00171 Aldehyde dehydrogenase family SH07_RS04980 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH07_RS04985 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH07_RS04990 PF04002 RadC-like JAB domain SH07_RS04995 PF03230 Antirestriction protein SH07_RS05000 PF06006 Bacterial protein of unknown function (DUF905) SH07_RS05020 PF06067 Domain of unknown function (DUF932) SH07_RS05025 PF01926 50S ribosome-binding GTPase SH07_RS05030 PF03466 LysR substrate binding domain SH07_RS05030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS05035 PF01527 Transposase SH07_RS05040 PF00665 Integrase core domain SH07_RS05040 PF13936 Helix-turn-helix domain SH07_RS05060 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SH07_RS05065 PF05598 Transposase domain (DUF772) SH07_RS05065 PF01609 Transposase DDE domain SH07_RS05070 PF00324 Amino acid permease SH07_RS05075 PF02574 Homocysteine S-methyltransferase SH07_RS05080 PF00005 ABC transporter SH07_RS05080 PF08402 TOBE domain SH07_RS05085 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS05090 PF03400 IS1 transposase SH07_RS05095 PF03811 InsA N-terminal domain SH07_RS05095 PF12759 InsA C-terminal domain SH07_RS05100 PF01527 Transposase SH07_RS05105 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH07_RS05110 PF00665 Integrase core domain SH07_RS05115 PF00701 Dihydrodipicolinate synthetase family SH07_RS05120 PF00920 Dehydratase family SH07_RS05130 PF04616 Glycosyl hydrolases family 43 SH07_RS05130 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain SH07_RS05135 PF01614 Bacterial transcriptional regulator SH07_RS05135 PF09339 IclR helix-turn-helix domain SH07_RS05140 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH07_RS05140 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH07_RS05145 PF03400 IS1 transposase SH07_RS05160 PF07638 ECF sigma factor SH07_RS05180 PF13356 Arm DNA-binding domain SH07_RS05180 PF00589 Phage integrase family SH07_RS05190 PF03466 LysR substrate binding domain SH07_RS05195 PF02625 XdhC and CoxI family SH07_RS05195 PF13478 XdhC Rossmann domain SH07_RS05200 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH07_RS05200 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH07_RS05205 PF03450 CO dehydrogenase flavoprotein C-terminal domain SH07_RS05205 PF00941 FAD binding domain in molybdopterin dehydrogenase SH07_RS05210 PF00111 2Fe-2S iron-sulfur cluster binding domain SH07_RS05210 PF01799 [2Fe-2S] binding domain SH07_RS05215 PF07274 Protein of unknown function (DUF1440) SH07_RS05220 PF03692 Putative zinc- or iron-chelating domain SH07_RS05235 PF16967 E-set like domain SH07_RS05235 PF15976 CS1-pili formation C-terminal SH07_RS05240 PF18649 EcpB C-terminal domain SH07_RS05245 PF16449 Fimbrillin MatB SH07_RS05250 PF00196 Bacterial regulatory proteins, luxR family SH07_RS05260 PF00444 Ribosomal protein L36 SH07_RS05265 PF01197 Ribosomal protein L31 SH07_RS05275 PF11924 Inverse autotransporter, beta-domain SH07_RS05280 PF01527 Transposase SH07_RS05285 PF13276 HTH-like domain SH07_RS05285 PF00665 Integrase core domain SH07_RS05285 PF13333 Integrase core domain SH07_RS05290 PF12833 Helix-turn-helix domain SH07_RS05295 PF04224 Protein of unknown function, DUF417 SH07_RS05300 PF07338 Protein of unknown function (DUF1471) SH07_RS05305 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH07_RS05305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH07_RS05310 PF12852 Cupin SH07_RS05310 PF12833 Helix-turn-helix domain SH07_RS05315 PF02754 Cysteine-rich domain SH07_RS05320 PF13183 4Fe-4S dicluster domain SH07_RS05320 PF11870 Domain of unknown function (DUF3390) SH07_RS05320 PF02589 LUD domain SH07_RS05325 PF02589 LUD domain SH07_RS05340 PF00732 GMC oxidoreductase SH07_RS05340 PF05199 GMC oxidoreductase SH07_RS05345 PF00171 Aldehyde dehydrogenase family SH07_RS05350 PF00440 Bacterial regulatory proteins, tetR family SH07_RS05350 PF13977 BetI-type transcriptional repressor, C-terminal SH07_RS05355 PF02028 BCCT, betaine/carnitine/choline family transporter SH07_RS05365 PF00563 EAL domain SH07_RS05365 PF00196 Bacterial regulatory proteins, luxR family SH07_RS05370 PF03466 LysR substrate binding domain SH07_RS05370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS05375 PF06496 Protein of unknown function (DUF1097) SH07_RS05380 PF12796 Ankyrin repeats (3 copies) SH07_RS05385 PF11392 Protein of unknown function (DUF2877) SH07_RS05390 PF00549 CoA-ligase SH07_RS05390 PF02629 CoA binding domain SH07_RS05395 PF06545 Protein of unknown function (DUF1116) SH07_RS05405 PF00696 Amino acid kinase family SH07_RS05410 PF07969 Amidohydrolase family SH07_RS05415 PF00107 Zinc-binding dehydrogenase SH07_RS05415 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS05430 PF01810 LysE type translocator SH07_RS05435 PF07338 Protein of unknown function (DUF1471) SH07_RS05440 PF02954 Bacterial regulatory protein, Fis family SH07_RS05440 PF00158 Sigma-54 interaction domain SH07_RS05440 PF06506 Propionate catabolism activator SH07_RS05450 PF00285 Citrate synthase, C-terminal domain SH07_RS05460 PF00501 AMP-binding enzyme SH07_RS05460 PF16177 Acetyl-coenzyme A synthetase N-terminus SH07_RS05460 PF13193 AMP-binding enzyme C-terminal domain SH07_RS05465 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin SH07_RS05470 PF07969 Amidohydrolase family SH07_RS05475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS05475 PF03466 LysR substrate binding domain SH07_RS05480 PF00484 Carbonic anhydrase SH07_RS05485 PF02560 Cyanate lyase C-terminal domain SH07_RS05490 PF07690 Major Facilitator Superfamily SH07_RS05495 PF00132 Bacterial transferase hexapeptide (six repeats) SH07_RS05495 PF12464 Maltose acetyltransferase SH07_RS05500 PF01306 LacY proton/sugar symporter SH07_RS05505 PF02929 Beta galactosidase small chain SH07_RS05505 PF16353 Domain of unknown function(DUF4981) SH07_RS05505 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH07_RS05505 PF00703 Glycosyl hydrolases family 2 SH07_RS05505 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH07_RS05510 PF00356 Bacterial regulatory proteins, lacI family SH07_RS05515 PF01614 Bacterial transcriptional regulator SH07_RS05515 PF09339 IclR helix-turn-helix domain SH07_RS05520 PF01494 FAD binding domain SH07_RS05525 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SH07_RS05530 PF12697 Alpha/beta hydrolase family SH07_RS05535 PF01557 Fumarylacetoacetate (FAA) hydrolase family SH07_RS05540 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation SH07_RS05540 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH07_RS05545 PF00682 HMGL-like SH07_RS05545 PF07836 DmpG-like communication domain SH07_RS05550 PF07690 Major Facilitator Superfamily SH07_RS05555 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) SH07_RS05560 PF00756 Putative esterase SH07_RS05565 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS05565 PF00107 Zinc-binding dehydrogenase SH07_RS05570 PF02583 Metal-sensitive transcriptional repressor SH07_RS05580 PF00132 Bacterial transferase hexapeptide (six repeats) SH07_RS05585 PF01527 Transposase SH07_RS05590 PF00665 Integrase core domain SH07_RS05590 PF13276 HTH-like domain SH07_RS05595 PF00535 Glycosyl transferase family 2 SH07_RS05600 PF02585 GlcNAc-PI de-N-acetylase SH07_RS05605 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH07_RS05610 PF00005 ABC transporter SH07_RS05615 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS05620 PF02668 Taurine catabolism dioxygenase TauD, TfdA family SH07_RS05625 PF00490 Delta-aminolevulinic acid dehydratase SH07_RS05640 PF00665 Integrase core domain SH07_RS05640 PF13333 Integrase core domain SH07_RS05640 PF13276 HTH-like domain SH07_RS05645 PF01527 Transposase SH07_RS05650 PF03212 Pertactin SH07_RS05650 PF03797 Autotransporter beta-domain SH07_RS05655 PF15977 Winged helix-turn-helix DNA binding SH07_RS05660 PF00144 Beta-lactamase SH07_RS05670 PF05992 SbmA/BacA-like family SH07_RS05675 PF07759 Protein of unknown function (DUF1615) SH07_RS05680 PF10954 Protein of unknown function (DUF2755) SH07_RS05685 PF10953 Protein of unknown function (DUF2754) SH07_RS05690 PF07478 D-ala D-ala ligase C-terminus SH07_RS05690 PF01820 D-ala D-ala ligase N-terminus SH07_RS05700 PF10796 Sigma-S stabilisation anti-adaptor protein SH07_RS05705 PF00245 Alkaline phosphatase SH07_RS05710 PF07769 psiF repeat SH07_RS05715 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS05715 PF05230 MASE2 domain SH07_RS05720 PF03807 NADP oxidoreductase coenzyme F420-dependent SH07_RS05720 PF14748 Pyrroline-5-carboxylate reductase dimerisation SH07_RS05725 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SH07_RS05730 PF01202 Shikimate kinase SH07_RS05735 PF16362 YaiA protein SH07_RS05745 PF07302 AroM protein SH07_RS05750 PF06865 Pyrimidine/purine nucleoside phosphorylase SH07_RS05755 PF10971 Protein of unknown function (DUF2773) SH07_RS05760 PF04381 Putative exonuclease, RdgC SH07_RS05765 PF00480 ROK family SH07_RS05770 PF07690 Major Facilitator Superfamily SH07_RS05775 PF13476 AAA domain SH07_RS05780 PF00149 Calcineurin-like phosphoesterase SH07_RS05780 PF12320 Type 5 capsule protein repressor C-terminal domain SH07_RS05785 PF00486 Transcriptional regulatory protein, C terminal SH07_RS05785 PF00072 Response regulator receiver domain SH07_RS05790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS05790 PF00989 PAS fold SH07_RS05790 PF11808 Phosphate regulon sensor protein PhoR SH07_RS05790 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS05795 PF05525 Branched-chain amino acid transport protein SH07_RS05800 PF00324 Amino acid permease SH07_RS05805 PF00128 Alpha amylase, catalytic domain SH07_RS05805 PF02903 Alpha amylase, N-terminal ig-like domain SH07_RS05810 PF04336 Acyl carrier protein phosphodiesterase SH07_RS05815 PF02547 Queuosine biosynthesis protein SH07_RS05820 PF01702 Queuine tRNA-ribosyltransferase SH07_RS05825 PF02699 Preprotein translocase subunit SH07_RS05830 PF02355 Protein export membrane protein SH07_RS05830 PF13721 SecD export protein N-terminal TM region SH07_RS05830 PF07549 SecD/SecF GG Motif SH07_RS05835 PF02355 Protein export membrane protein SH07_RS05835 PF07549 SecD/SecF GG Motif SH07_RS05840 PF01844 HNH endonuclease SH07_RS05850 PF03502 Nucleoside-specific channel-forming protein, Tsx SH07_RS05855 PF11622 Protein of unknown function (DUF3251) SH07_RS05860 PF03477 ATP cone domain SH07_RS05865 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SH07_RS05865 PF01872 RibD C-terminal domain SH07_RS05870 PF00885 6,7-dimethyl-8-ribityllumazine synthase SH07_RS05875 PF01029 NusB family SH07_RS05880 PF00586 AIR synthase related protein, N-terminal domain SH07_RS05880 PF02769 AIR synthase related protein, C-terminal domain SH07_RS05885 PF04608 Phosphatidylglycerophosphatase A SH07_RS05890 PF00248 Aldo/keto reductase family SH07_RS05895 PF02780 Transketolase, C-terminal domain SH07_RS05895 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SH07_RS05895 PF02779 Transketolase, pyrimidine binding domain SH07_RS05900 PF00348 Polyprenyl synthetase SH07_RS05905 PF02609 Exonuclease VII small subunit SH07_RS05910 PF02926 THUMP domain SH07_RS05910 PF02568 Thiamine biosynthesis protein (ThiI) SH07_RS05915 PF01965 DJ-1/PfpI family SH07_RS05920 PF02558 Ketopantoate reductase PanE/ApbA SH07_RS05920 PF08546 Ketopantoate reductase PanE/ApbA C terminal SH07_RS05925 PF04461 Protein of unknown function (DUF520) SH07_RS05930 PF07690 Major Facilitator Superfamily SH07_RS05935 PF01040 UbiA prenyltransferase family SH07_RS05940 PF03626 Prokaryotic Cytochrome C oxidase subunit IV SH07_RS05945 PF00510 Cytochrome c oxidase subunit III SH07_RS05950 PF00115 Cytochrome C and Quinol oxidase polypeptide I SH07_RS05955 PF06481 COX Aromatic Rich Motif SH07_RS05955 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SH07_RS05960 PF07690 Major Facilitator Superfamily SH07_RS05965 PF03923 Uncharacterized lipoprotein SH07_RS05965 PF08139 Prokaryotic membrane lipoprotein lipid attachment site SH07_RS05970 PF01722 BolA-like protein SH07_RS05980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH07_RS05980 PF05698 Bacterial trigger factor protein (TF) C-terminus SH07_RS05980 PF05697 Bacterial trigger factor protein (TF) SH07_RS05985 PF00574 Clp protease SH07_RS05990 PF06689 ClpX C4-type zinc finger SH07_RS05990 PF07724 AAA domain (Cdc48 subfamily) SH07_RS05990 PF10431 C-terminal, D2-small domain, of ClpB protein SH07_RS05995 PF00004 ATPase family associated with various cellular activities (AAA) SH07_RS05995 PF02190 ATP-dependent protease La (LON) substrate-binding domain SH07_RS05995 PF05362 Lon protease (S16) C-terminal proteolytic domain SH07_RS06000 PF00216 Bacterial DNA-binding protein SH07_RS06005 PF13145 PPIC-type PPIASE domain SH07_RS06020 PF06508 Queuosine biosynthesis protein QueC SH07_RS06025 PF12793 Sugar transport-related sRNA regulator N-term SH07_RS06025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH07_RS06035 PF13404 AsnC-type helix-turn-helix domain SH07_RS06035 PF01037 Lrp/AsnC ligand binding domain SH07_RS06040 PF00005 ABC transporter SH07_RS06040 PF00664 ABC transporter transmembrane region SH07_RS06045 PF00664 ABC transporter transmembrane region SH07_RS06045 PF00005 ABC transporter SH07_RS06050 PF00543 Nitrogen regulatory protein P-II SH07_RS06055 PF00909 Ammonium Transporter Family SH07_RS06065 PF09619 Type III secretion system lipoprotein chaperone (YscW) SH07_RS06070 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH07_RS06075 PF07237 Protein of unknown function (DUF1428) SH07_RS06080 PF00563 EAL domain SH07_RS06080 PF12792 CSS motif domain associated with EAL SH07_RS06085 PF10777 Inner membrane protein YlaC SH07_RS06090 PF14602 Hexapeptide repeat of succinyl-transferase SH07_RS06090 PF12464 Maltose acetyltransferase SH07_RS06095 PF05321 Haemolysin expression modulating protein SH07_RS06100 PF10757 Biofilm formation regulator YbaJ SH07_RS06105 PF00873 AcrB/AcrD/AcrF family SH07_RS06110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH07_RS06110 PF00529 HlyD membrane-fusion protein of T1SS SH07_RS06115 PF08361 MAATS-type transcriptional repressor, C-terminal region SH07_RS06115 PF00440 Bacterial regulatory proteins, tetR family SH07_RS06120 PF00924 Mechanosensitive ion channel SH07_RS06120 PF12795 Mechanosensitive ion channel porin domain SH07_RS06120 PF12794 Mechanosensitive ion channel inner membrane domain 1 SH07_RS06130 PF10689 Protein of unknown function (DUF2496) SH07_RS06135 PF07445 Primosomal replication protein priC SH07_RS06140 PF04304 Protein of unknown function (DUF454) SH07_RS06145 PF00156 Phosphoribosyl transferase domain SH07_RS06150 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding SH07_RS06150 PF12170 DNA polymerase III tau subunit V interacting with alpha SH07_RS06150 PF12169 DNA polymerase III subunits gamma and tau domain III SH07_RS06155 PF02575 YbaB/EbfC DNA-binding family SH07_RS06160 PF02132 RecR protein SH07_RS06160 PF13662 Toprim domain SH07_RS06165 PF00183 Hsp90 protein SH07_RS06165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS06170 PF05191 Adenylate kinase, active site lid SH07_RS06175 PF00762 Ferrochelatase SH07_RS06180 PF07859 alpha/beta hydrolase fold SH07_RS06185 PF00294 pfkB family carbohydrate kinase SH07_RS06190 PF02254 TrkA-N domain SH07_RS06190 PF00999 Sodium/hydrogen exchanger family SH07_RS06195 PF07690 Major Facilitator Superfamily SH07_RS06200 PF02872 5'-nucleotidase, C-terminal domain SH07_RS06200 PF00149 Calcineurin-like phosphoesterase SH07_RS06205 PF04073 Aminoacyl-tRNA editing domain SH07_RS06210 PF01963 TraB family SH07_RS06215 PF01381 Helix-turn-helix SH07_RS06220 PF00403 Heavy-metal-associated domain SH07_RS06225 PF04960 Glutaminase SH07_RS06230 PF13520 Amino acid permease SH07_RS06235 PF13411 MerR HTH family regulatory protein SH07_RS06240 PF01957 NfeD-like C-terminal, partner-binding SH07_RS06245 PF01145 SPFH domain / Band 7 family SH07_RS06245 PF16200 C-terminal region of band_7 SH07_RS06250 PF00005 ABC transporter SH07_RS06255 PF03649 Uncharacterised protein family (UPF0014) SH07_RS06260 PF00085 Thioredoxin SH07_RS06265 PF00106 short chain dehydrogenase SH07_RS06270 PF13472 GDSL-like Lipase/Acylhydrolase family SH07_RS06275 PF00005 ABC transporter SH07_RS06285 PF14220 Domain of unknown function (DUF4329) SH07_RS06285 PF03527 RHS protein SH07_RS06285 PF05593 RHS Repeat SH07_RS06290 PF15631 NTF2 fold immunity protein SH07_RS06295 PF03527 RHS protein SH07_RS06315 PF03466 LysR substrate binding domain SH07_RS06315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS06320 PF04115 Ureidoglycolate lyase SH07_RS06325 PF09339 IclR helix-turn-helix domain SH07_RS06325 PF01614 Bacterial transcriptional regulator SH07_RS06330 PF00205 Thiamine pyrophosphate enzyme, central domain SH07_RS06330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH07_RS06330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH07_RS06335 PF01261 Xylose isomerase-like TIM barrel SH07_RS06340 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH07_RS06340 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH07_RS06345 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin SH07_RS06350 PF01979 Amidohydrolase family SH07_RS06355 PF00860 Permease family SH07_RS06360 PF02595 Glycerate kinase family SH07_RS06365 PF05899 Protein of unknown function (DUF861) SH07_RS06365 PF07883 Cupin domain SH07_RS06370 PF01546 Peptidase family M20/M25/M40 SH07_RS06375 PF02615 Malate/L-lactate dehydrogenase SH07_RS06380 PF02629 CoA binding domain SH07_RS06380 PF00549 CoA-ligase SH07_RS06385 PF06545 Protein of unknown function (DUF1116) SH07_RS06390 PF11392 Protein of unknown function (DUF2877) SH07_RS06395 PF00696 Amino acid kinase family SH07_RS06400 PF02222 ATP-grasp domain SH07_RS06400 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SH07_RS06405 PF00731 AIR carboxylase SH07_RS06410 PF12850 Calcineurin-like phosphoesterase superfamily domain SH07_RS06415 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SH07_RS06420 PF09190 DALR domain SH07_RS06420 PF01406 tRNA synthetases class I (C) catalytic domain SH07_RS06425 PF04307 LexA-binding, inner membrane-associated putative hydrolase SH07_RS06435 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SH07_RS06435 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SH07_RS06440 PF00419 Fimbrial protein SH07_RS06445 PF02753 Pili assembly chaperone PapD, C-terminal domain SH07_RS06445 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH07_RS06450 PF00577 Outer membrane usher protein SH07_RS06450 PF13954 PapC N-terminal domain SH07_RS06450 PF13953 PapC C-terminal domain SH07_RS06455 PF00419 Fimbrial protein SH07_RS06460 PF00419 Fimbrial protein SH07_RS06465 PF00072 Response regulator receiver domain SH07_RS06465 PF00196 Bacterial regulatory proteins, luxR family SH07_RS06475 PF00589 Phage integrase family SH07_RS06485 PF06992 Replication protein P SH07_RS06495 PF01527 Transposase SH07_RS06500 PF13276 HTH-like domain SH07_RS06500 PF13333 Integrase core domain SH07_RS06500 PF00665 Integrase core domain SH07_RS06510 PF00893 Small Multidrug Resistance protein SH07_RS06520 PF07508 Recombinase SH07_RS06520 PF00239 Resolvase, N terminal domain SH07_RS06520 PF13408 Recombinase zinc beta ribbon domain SH07_RS06525 PF01161 Phosphatidylethanolamine-binding protein SH07_RS06530 PF12833 Helix-turn-helix domain SH07_RS06545 PF07102 Protein of unknown function (DUF1364) SH07_RS06550 PF05866 Endodeoxyribonuclease RusA SH07_RS06560 PF06530 Phage antitermination protein Q SH07_RS06570 PF01609 Transposase DDE domain SH07_RS06570 PF05598 Transposase domain (DUF772) SH07_RS06575 PF00267 Gram-negative porin SH07_RS06580 PF04971 Bacteriophage P21 holin S SH07_RS06585 PF00959 Phage lysozyme SH07_RS06590 PF03245 Bacteriophage Rz lysis protein SH07_RS06595 PF06291 Bor protein SH07_RS06605 PF07166 Protein of unknown function (DUF1398) SH07_RS06615 PF13132 Domain of unknown function (DUF3950) SH07_RS06625 PF07471 Phage DNA packaging protein Nu1 SH07_RS06630 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH07_RS06635 PF08242 Methyltransferase domain SH07_RS06645 PF12833 Helix-turn-helix domain SH07_RS06650 PF01278 Omptin family SH07_RS06660 PF12833 Helix-turn-helix domain SH07_RS06665 PF14488 Domain of unknown function (DUF4434) SH07_RS06670 PF13283 Bacteriophage N adsorption protein A C-term SH07_RS06675 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SH07_RS06675 PF13632 Glycosyl transferase family group 2 SH07_RS06680 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS06680 PF00672 HAMP domain SH07_RS06680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS06685 PF00072 Response regulator receiver domain SH07_RS06685 PF00486 Transcriptional regulatory protein, C terminal SH07_RS06690 PF02321 Outer membrane efflux protein SH07_RS06695 PF11604 Copper binding periplasmic protein CusF SH07_RS06700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH07_RS06700 PF00529 HlyD membrane-fusion protein of T1SS SH07_RS06705 PF00873 AcrB/AcrD/AcrF family SH07_RS06710 PF00324 Amino acid permease SH07_RS06715 PF00924 Mechanosensitive ion channel SH07_RS06720 PF00881 Nitroreductase family SH07_RS06725 PF04237 YjbR SH07_RS06730 PF06643 Protein of unknown function (DUF1158) SH07_RS06735 PF04107 Glutamate-cysteine ligase family 2(GCS2) SH07_RS06745 PF01848 Hok/gef family SH07_RS06750 PF01609 Transposase DDE domain SH07_RS06755 PF01648 4'-phosphopantetheinyl transferase superfamily SH07_RS06755 PF17837 4'-phosphopantetheinyl transferase N-terminal domain SH07_RS06760 PF07715 TonB-dependent Receptor Plug Domain SH07_RS06760 PF00593 TonB dependent receptor SH07_RS06765 PF00756 Putative esterase SH07_RS06765 PF11806 Domain of unknown function (DUF3327) SH07_RS06770 PF03621 MbtH-like protein SH07_RS06775 PF13193 AMP-binding enzyme C-terminal domain SH07_RS06775 PF00975 Thioesterase domain SH07_RS06775 PF00550 Phosphopantetheine attachment site SH07_RS06775 PF00668 Condensation domain SH07_RS06775 PF00501 AMP-binding enzyme SH07_RS06780 PF02706 Chain length determinant protein SH07_RS06785 PF00005 ABC transporter SH07_RS06790 PF01032 FecCD transport family SH07_RS06795 PF01032 FecCD transport family SH07_RS06800 PF05977 Transmembrane secretion effector SH07_RS06805 PF01497 Periplasmic binding protein SH07_RS06810 PF00425 chorismate binding enzyme SH07_RS06815 PF13193 AMP-binding enzyme C-terminal domain SH07_RS06815 PF00501 AMP-binding enzyme SH07_RS06820 PF00857 Isochorismatase family SH07_RS06820 PF00550 Phosphopantetheine attachment site SH07_RS06830 PF03061 Thioesterase superfamily SH07_RS06835 PF13722 5TM C-terminal transporter carbon starvation CstA SH07_RS06835 PF02554 Carbon starvation protein CstA SH07_RS06840 PF04328 Selenoprotein, putative SH07_RS06845 PF00465 Iron-containing alcohol dehydrogenase SH07_RS06850 PF00155 Aminotransferase class I and II SH07_RS06855 PF02195 ParB-like nuclease domain SH07_RS06860 PF01507 Phosphoadenosine phosphosulfate reductase family SH07_RS06860 PF11922 Domain of unknown function (DUF3440) SH07_RS06865 PF03466 LysR substrate binding domain SH07_RS06865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS06870 PF13098 Thioredoxin-like domain SH07_RS06875 PF10417 C-terminal domain of 1-Cys peroxiredoxin SH07_RS06875 PF00578 AhpC/TSA family SH07_RS06880 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH07_RS06880 PF13192 Thioredoxin domain SH07_RS06885 PF00582 Universal stress protein family SH07_RS06890 PF13823 Alcohol dehydrogenase GroES-associated SH07_RS06890 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS06890 PF00107 Zinc-binding dehydrogenase SH07_RS06900 PF14760 Rnk N-terminus SH07_RS06900 PF01272 Transcription elongation factor, GreA/GreB, C-term SH07_RS06905 PF00445 Ribonuclease T2 family SH07_RS06910 PF00939 Sodium:sulfate symporter transmembrane region SH07_RS06915 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SH07_RS06920 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase SH07_RS06925 PF04223 Citrate lyase, alpha subunit (CitF) SH07_RS06930 PF03328 HpcH/HpaI aldolase/citrate lyase family SH07_RS06935 PF06857 Malonate decarboxylase delta subunit (MdcD) SH07_RS06940 PF08218 Citrate lyase ligase C-terminal domain SH07_RS06945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS06945 PF00989 PAS fold SH07_RS06945 PF17203 Single cache domain 3 SH07_RS06945 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SH07_RS06950 PF12431 Transcriptional regulator SH07_RS06950 PF00072 Response regulator receiver domain SH07_RS06955 PF03606 C4-dicarboxylate anaerobic carrier SH07_RS06960 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP SH07_RS06965 PF00313 'Cold-shock' DNA-binding domain SH07_RS06970 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SH07_RS06980 PF02416 mttA/Hcf106 family SH07_RS06985 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family SH07_RS06985 PF04055 Radical SAM superfamily SH07_RS06990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS06990 PF03466 LysR substrate binding domain SH07_RS07000 PF03099 Biotin/lipoate A/B protein ligase family SH07_RS07005 PF04359 Protein of unknown function (DUF493) SH07_RS07010 PF00768 D-alanyl-D-alanine carboxypeptidase SH07_RS07010 PF07943 Penicillin-binding protein 5, C-terminal domain SH07_RS07015 PF05036 Sporulation related domain SH07_RS07015 PF03330 Lytic transglycolase SH07_RS07020 PF01098 Cell cycle protein SH07_RS07025 PF00905 Penicillin binding protein transpeptidase domain SH07_RS07025 PF03717 Penicillin-binding Protein dimerisation domain SH07_RS07030 PF02590 Predicted SPOUT methyltransferase SH07_RS07040 PF00300 Histidine phosphatase superfamily (branch 1) SH07_RS07045 PF01467 Cytidylyltransferase-like SH07_RS07050 PF14840 Processivity clamp loader gamma complex DNA pol III C-term SH07_RS07050 PF06144 DNA polymerase III, delta subunit SH07_RS07055 PF04390 Lipopolysaccharide-assembly SH07_RS07060 PF08264 Anticodon-binding domain of tRNA SH07_RS07060 PF13603 Leucyl-tRNA synthetase, Domain 2 SH07_RS07060 PF00133 tRNA synthetases class I (I, L, M and V) SH07_RS07065 PF07295 Zinc-ribbon containing domain SH07_RS07070 PF08238 Sel1 repeat SH07_RS07075 PF06889 Protein of unknown function (DUF1266) SH07_RS07085 PF08238 Sel1 repeat SH07_RS07090 PF06889 Protein of unknown function (DUF1266) SH07_RS07100 PF00012 Hsp70 protein SH07_RS07105 PF01156 Inosine-uridine preferring nucleoside hydrolase SH07_RS07110 PF00005 ABC transporter SH07_RS07115 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS07120 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS07125 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH07_RS07130 PF01609 Transposase DDE domain SH07_RS07130 PF05598 Transposase domain (DUF772) SH07_RS07135 PF00795 Carbon-nitrogen hydrolase SH07_RS07140 PF03471 Transporter associated domain SH07_RS07140 PF00571 CBS domain SH07_RS07145 PF02130 Uncharacterized protein family UPF0054 SH07_RS07150 PF02562 PhoH-like protein SH07_RS07155 PF04055 Radical SAM superfamily SH07_RS07155 PF01938 TRAM domain SH07_RS07155 PF00919 Uncharacterized protein family UPF0004 SH07_RS07160 PF01494 FAD binding domain SH07_RS07200 PF13537 Glutamine amidotransferase domain SH07_RS07200 PF00733 Asparagine synthase SH07_RS07205 PF13344 Haloacid dehalogenase-like hydrolase SH07_RS07210 PF01047 MarR family SH07_RS07210 PF00480 ROK family SH07_RS07215 PF01979 Amidohydrolase family SH07_RS07220 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH07_RS07225 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH07_RS07225 PF00367 phosphotransferase system, EIIB SH07_RS07225 PF02378 Phosphotransferase system, EIIC SH07_RS07230 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SH07_RS07230 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH07_RS07235 PF03573 outer membrane porin, OprD family SH07_RS07240 PF13982 YbfN-like lipoprotein SH07_RS07245 PF01475 Ferric uptake regulator family SH07_RS07260 PF00258 Flavodoxin SH07_RS07265 PF01402 Ribbon-helix-helix protein, copG family SH07_RS07270 PF12697 Alpha/beta hydrolase family SH07_RS07275 PF03925 SeqA protein C-terminal domain SH07_RS07275 PF17206 SeqA protein N-terminal domain SH07_RS07280 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH07_RS07280 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH07_RS07280 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH07_RS07280 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH07_RS07300 PF13520 Amino acid permease SH07_RS07305 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH07_RS07305 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH07_RS07305 PF01276 Orn/Lys/Arg decarboxylase, major domain SH07_RS07315 PF00072 Response regulator receiver domain SH07_RS07315 PF00486 Transcriptional regulatory protein, C terminal SH07_RS07320 PF13492 GAF domain SH07_RS07320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS07320 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS07320 PF02702 Osmosensitive K+ channel His kinase sensor domain SH07_RS07320 PF13493 Domain of unknown function (DUF4118) SH07_RS07325 PF02669 K+-transporting ATPase, c chain SH07_RS07335 PF03814 Potassium-transporting ATPase A subunit SH07_RS07340 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) SH07_RS07345 PF10725 Protein of unknown function (DUF2517) SH07_RS07350 PF05593 RHS Repeat SH07_RS07350 PF03527 RHS protein SH07_RS07360 PF05593 RHS Repeat SH07_RS07360 PF03527 RHS protein SH07_RS07370 PF13808 DDE_Tnp_1-associated SH07_RS07375 PF13808 DDE_Tnp_1-associated SH07_RS07375 PF01609 Transposase DDE domain SH07_RS07380 PF13808 DDE_Tnp_1-associated SH07_RS07380 PF01609 Transposase DDE domain SH07_RS07385 PF08349 Protein of unknown function (DUF1722) SH07_RS07390 PF03441 FAD binding domain of DNA photolyase SH07_RS07390 PF00875 DNA photolyase SH07_RS07395 PF00854 POT family SH07_RS07400 PF01784 NIF3 (NGG1p interacting factor 3) SH07_RS07405 PF02682 Carboxyltransferase domain, subdomain C and D SH07_RS07410 PF02626 Carboxyltransferase domain, subdomain A and B SH07_RS07415 PF03746 LamB/YcsF family SH07_RS07420 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SH07_RS07420 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SH07_RS07420 PF06827 Zinc finger found in FPG and IleRS SH07_RS07425 PF05145 Transition state regulatory protein AbrB SH07_RS07430 PF00419 Fimbrial protein SH07_RS07435 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH07_RS07435 PF02753 Pili assembly chaperone PapD, C-terminal domain SH07_RS07440 PF13953 PapC C-terminal domain SH07_RS07440 PF00577 Outer membrane usher protein SH07_RS07440 PF13954 PapC N-terminal domain SH07_RS07445 PF00419 Fimbrial protein SH07_RS07450 PF00285 Citrate synthase, C-terminal domain SH07_RS07460 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SH07_RS07465 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SH07_RS07470 PF02910 Fumarate reductase flavoprotein C-term SH07_RS07470 PF00890 FAD binding domain SH07_RS07475 PF13085 2Fe-2S iron-sulfur cluster binding domain SH07_RS07485 PF02779 Transketolase, pyrimidine binding domain SH07_RS07485 PF16078 2-oxoglutarate dehydrogenase N-terminus SH07_RS07485 PF00676 Dehydrogenase E1 component SH07_RS07485 PF16870 2-oxoglutarate dehydrogenase C-terminal SH07_RS07490 PF00364 Biotin-requiring enzyme SH07_RS07490 PF02817 e3 binding domain SH07_RS07490 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH07_RS07495 PF08442 ATP-grasp domain SH07_RS07495 PF00549 CoA-ligase SH07_RS07500 PF02629 CoA binding domain SH07_RS07500 PF00549 CoA-ligase SH07_RS07505 PF07702 UTRA domain SH07_RS07505 PF00392 Bacterial regulatory proteins, gntR family SH07_RS07510 PF02378 Phosphotransferase system, EIIC SH07_RS07510 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH07_RS07510 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH07_RS07515 PF07748 Glycosyl hydrolases family 38 C-terminal domain SH07_RS07515 PF01074 Glycosyl hydrolases family 38 N-terminal domain SH07_RS07515 PF09261 Alpha mannosidase middle domain SH07_RS07525 PF01654 Cytochrome bd terminal oxidase subunit I SH07_RS07530 PF02322 Cytochrome bd terminal oxidase subunit II SH07_RS07535 PF08173 Membrane bound YbgT-like protein SH07_RS07540 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) SH07_RS07545 PF03061 Thioesterase superfamily SH07_RS07550 PF01618 MotA/TolQ/ExbB proton channel family SH07_RS07555 PF02472 Biopolymer transport protein ExbD/TolR SH07_RS07560 PF06519 TolA C-terminal SH07_RS07565 PF07676 WD40-like Beta Propeller Repeat SH07_RS07565 PF04052 TolB amino-terminal domain SH07_RS07570 PF00691 OmpA family SH07_RS07575 PF16331 TolA binding protein trimerisation SH07_RS07575 PF13174 Tetratricopeptide repeat SH07_RS07615 PF02445 Quinolinate synthetase A protein SH07_RS07620 PF04973 Nicotinamide mononucleotide transporter SH07_RS07625 PF01545 Cation efflux family SH07_RS07630 PF13985 YbgS-like protein SH07_RS07640 PF00793 DAHP synthetase I family SH07_RS07645 PF00300 Histidine phosphatase superfamily (branch 1) SH07_RS07650 PF01263 Aldose 1-epimerase SH07_RS07655 PF00288 GHMP kinases N terminal domain SH07_RS07655 PF08544 GHMP kinases C terminal SH07_RS07655 PF10509 Galactokinase galactose-binding signature SH07_RS07660 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SH07_RS07660 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SH07_RS07665 PF16363 GDP-mannose 4,6 dehydratase SH07_RS07670 PF00005 ABC transporter SH07_RS07675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS07675 PF03459 TOBE domain SH07_RS07680 PF10766 Multidrug efflux pump-associated protein AcrZ SH07_RS07690 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS07695 PF00005 ABC transporter SH07_RS07695 PF03459 TOBE domain SH07_RS07705 PF10282 Lactonase, 7-bladed beta-propeller SH07_RS07710 PF03466 LysR substrate binding domain SH07_RS07710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS07715 PF04303 PrpF protein SH07_RS07720 PF00939 Sodium:sulfate symporter transmembrane region SH07_RS07725 PF00694 Aconitase C-terminal domain SH07_RS07725 PF00330 Aconitase family (aconitate hydratase) SH07_RS07730 PF01095 Pectinesterase SH07_RS07735 PF01161 Phosphatidylethanolamine-binding protein SH07_RS07740 PF00202 Aminotransferase class-III SH07_RS07745 PF06968 Biotin and Thiamin Synthesis associated domain SH07_RS07745 PF04055 Radical SAM superfamily SH07_RS07750 PF00155 Aminotransferase class I and II SH07_RS07755 PF08241 Methyltransferase domain SH07_RS07765 PF04851 Type III restriction enzyme, res subunit SH07_RS07765 PF02151 UvrB/uvrC motif SH07_RS07765 PF12344 Ultra-violet resistance protein B SH07_RS07765 PF17757 UvrB interaction domain SH07_RS07765 PF00271 Helicase conserved C-terminal domain SH07_RS07770 PF01933 Uncharacterised protein family UPF0052 SH07_RS07780 PF04055 Radical SAM superfamily SH07_RS07780 PF06463 Molybdenum Cofactor Synthesis C SH07_RS07785 PF00994 Probable molybdopterin binding domain SH07_RS07790 PF01967 MoaC family SH07_RS07795 PF02597 ThiS family SH07_RS07800 PF02391 MoaE protein SH07_RS07805 PF01027 Inhibitor of apoptosis-promoting Bax1 SH07_RS07810 PF01027 Inhibitor of apoptosis-promoting Bax1 SH07_RS07815 PF03706 Lysylphosphatidylglycerol synthase TM region SH07_RS07820 PF13091 PLD-like domain SH07_RS07825 PF03372 Endonuclease/Exonuclease/phosphatase family SH07_RS07830 PF11076 Putative inner membrane protein YbhQ SH07_RS07845 PF00005 ABC transporter SH07_RS07850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH07_RS07855 PF09209 Tetracyclin repressor-like, C-terminal domain SH07_RS07855 PF00440 Bacterial regulatory proteins, tetR family SH07_RS07860 PF00271 Helicase conserved C-terminal domain SH07_RS07860 PF00270 DEAD/DEAH box helicase SH07_RS07865 PF08719 Domain of unknown function (DUF1768) SH07_RS07870 PF13307 Helicase C-terminal domain SH07_RS07870 PF06733 DEAD_2 SH07_RS07870 PF00270 DEAD/DEAH box helicase SH07_RS07875 PF02885 Glycosyl transferase family, helical bundle domain SH07_RS07880 PF02615 Malate/L-lactate dehydrogenase SH07_RS07885 PF07338 Protein of unknown function (DUF1471) SH07_RS07890 PF01258 Prokaryotic dksA/traR C4-type zinc finger SH07_RS07895 PF18331 PKHD-type hydroxylase C-terminal domain SH07_RS07895 PF13640 2OG-Fe(II) oxygenase superfamily SH07_RS07900 PF07715 TonB-dependent Receptor Plug Domain SH07_RS07900 PF00593 TonB dependent receptor SH07_RS07905 PF07338 Protein of unknown function (DUF1471) SH07_RS07910 PF05971 RNA methyltransferase SH07_RS07915 PF00924 Mechanosensitive ion channel SH07_RS07920 PF00005 ABC transporter SH07_RS07925 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS07930 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH07_RS07940 PF00210 Ferritin-like domain SH07_RS07945 PF00892 EamA-like transporter family SH07_RS07950 PF13505 Outer membrane protein beta-barrel domain SH07_RS07955 PF00884 Sulfatase SH07_RS07965 PF01325 Iron dependent repressor, N-terminal DNA binding domain SH07_RS07965 PF02742 Iron dependent repressor, metal binding and dimerisation domain SH07_RS07970 PF03600 Citrate transporter SH07_RS07975 PF17969 L,D-transpeptidase C-terminal domain SH07_RS07975 PF03734 L,D-transpeptidase catalytic domain SH07_RS07980 PF00005 ABC transporter SH07_RS07980 PF12848 ABC transporter SH07_RS07985 PF07350 Protein of unknown function (DUF1479) SH07_RS07995 PF01228 Glycine radical SH07_RS07995 PF02901 Pyruvate formate lyase-like SH07_RS08000 PF04055 Radical SAM superfamily SH07_RS08005 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH07_RS08010 PF00899 ThiF family SH07_RS08015 PF03454 MoeA C-terminal region (domain IV) SH07_RS08015 PF03453 MoeA N-terminal region (domain I and II) SH07_RS08015 PF00994 Probable molybdopterin binding domain SH07_RS08020 PF01112 Asparaginase SH07_RS08025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH07_RS08025 PF00005 ABC transporter SH07_RS08030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH07_RS08035 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS08040 PF12911 N-terminal TM domain of oligopeptide transport permease C SH07_RS08040 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS08045 PF17153 Periplasmic sensor domain, extracellular SH07_RS08045 PF00563 EAL domain SH07_RS08050 PF17156 Gammaproteobacterial periplasmic sensor domain SH07_RS08050 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS08055 PF04055 Radical SAM superfamily SH07_RS08055 PF18693 TRAM domain SH07_RS08055 PF00919 Uncharacterized protein family UPF0004 SH07_RS08060 PF10799 Biofilm formation protein (YliH/bssR) SH07_RS08065 PF07995 Glucose / Sorbosone dehydrogenase SH07_RS08070 PF00043 Glutathione S-transferase, C-terminal domain SH07_RS08070 PF13417 Glutathione S-transferase, N-terminal domain SH07_RS08075 PF07943 Penicillin-binding protein 5, C-terminal domain SH07_RS08075 PF00768 D-alanyl-D-alanine carboxypeptidase SH07_RS08080 PF00455 DeoR C terminal sensor domain SH07_RS08080 PF08220 DeoR-like helix-turn-helix domain SH07_RS08085 PF01569 PAP2 superfamily SH07_RS08090 PF07690 Major Facilitator Superfamily SH07_RS08105 PF07690 Major Facilitator Superfamily SH07_RS08110 PF00440 Bacterial regulatory proteins, tetR family SH07_RS08115 PF02080 TrkA-C domain SH07_RS08115 PF06826 Predicted Permease Membrane Region SH07_RS08120 PF11045 Putative inner membrane protein of Enterobacteriaceae SH07_RS08125 PF00462 Glutaredoxin SH07_RS08130 PF07214 Protein of unknown function (DUF1418) SH07_RS08135 PF00881 Nitroreductase family SH07_RS08140 PF18030 RimK PreATP-grasp domain SH07_RS08140 PF08443 RimK-like ATP-grasp domain SH07_RS08145 PF10722 Putative bacterial sensory transduction regulator SH07_RS08155 PF13416 Bacterial extracellular solute-binding protein SH07_RS08160 PF08402 TOBE domain SH07_RS08160 PF00005 ABC transporter SH07_RS08165 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS08170 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS08175 PF10767 Protein of unknown function (DUF2593) SH07_RS08180 PF05958 tRNA (Uracil-5-)-methyltransferase SH07_RS08185 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH07_RS08190 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS08195 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS08200 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH07_RS08205 PF00005 ABC transporter SH07_RS08210 PF12883 Protein of unknown function (DUF3828) SH07_RS08215 PF01906 Putative heavy-metal-binding SH07_RS08220 PF01510 N-acetylmuramoyl-L-alanine amidase SH07_RS08225 PF01370 NAD dependent epimerase/dehydratase family SH07_RS08230 PF11066 Protein of unknown function (DUF2867) SH07_RS08230 PF13460 NAD(P)H-binding SH07_RS08235 PF01212 Beta-eliminating lyase SH07_RS08240 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH07_RS08240 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH07_RS08240 PF00205 Thiamine pyrophosphate enzyme, central domain SH07_RS08245 PF00111 2Fe-2S iron-sulfur cluster binding domain SH07_RS08245 PF00970 Oxidoreductase FAD-binding domain SH07_RS08245 PF00175 Oxidoreductase NAD-binding domain SH07_RS08250 PF03063 Prismane/CO dehydrogenase family SH07_RS08255 PF03956 Lysine exporter LysO SH07_RS08260 PF00230 Major intrinsic protein SH07_RS08270 PF11398 Protein of unknown function (DUF2813) SH07_RS08275 PF04393 Protein of unknown function (DUF535) SH07_RS08280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH07_RS08285 PF02687 FtsX-like permease family SH07_RS08285 PF00005 ABC transporter SH07_RS08285 PF12704 MacB-like periplasmic core domain SH07_RS08290 PF00313 'Cold-shock' DNA-binding domain SH07_RS08295 PF02617 ATP-dependent Clp protease adaptor protein ClpS SH07_RS08300 PF10431 C-terminal, D2-small domain, of ClpB protein SH07_RS08300 PF02861 Clp amino terminal domain, pathogenicity island component SH07_RS08300 PF17871 AAA lid domain SH07_RS08300 PF07724 AAA domain (Cdc48 subfamily) SH07_RS08300 PF00004 ATPase family associated with various cellular activities (AAA) SH07_RS08310 PF01176 Translation initiation factor 1A / IF-1 SH07_RS08315 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SH07_RS08320 PF00005 ABC transporter SH07_RS08320 PF00664 ABC transporter transmembrane region SH07_RS08325 PF00664 ABC transporter transmembrane region SH07_RS08325 PF00005 ABC transporter SH07_RS08330 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH07_RS08335 PF01037 Lrp/AsnC ligand binding domain SH07_RS08340 PF17854 FtsK alpha domain SH07_RS08340 PF09397 Ftsk gamma domain SH07_RS08340 PF01580 FtsK/SpoIIIE family SH07_RS08340 PF13491 4TM region of DNA translocase FtsK/SpoIIIE SH07_RS08345 PF03548 Outer membrane lipoprotein carrier protein LolA SH07_RS08350 PF12002 MgsA AAA+ ATPase C terminal SH07_RS08350 PF16193 AAA C-terminal domain SH07_RS08350 PF00004 ATPase family associated with various cellular activities (AAA) SH07_RS08355 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH07_RS08355 PF02403 Seryl-tRNA synthetase N-terminal domain SH07_RS08360 PF01568 Molydopterin dinucleotide binding domain SH07_RS08360 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS08360 PF00384 Molybdopterin oxidoreductase SH07_RS08365 PF12800 4Fe-4S binding domain SH07_RS08365 PF13247 4Fe-4S dicluster domain SH07_RS08370 PF04976 DMSO reductase anchor subunit (DmsC) SH07_RS08375 PF00857 Isochorismatase family SH07_RS08380 PF07690 Major Facilitator Superfamily SH07_RS08385 PF13520 Amino acid permease SH07_RS08390 PF03466 LysR substrate binding domain SH07_RS08390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS08395 PF02525 Flavodoxin-like fold SH07_RS08400 PF04055 Radical SAM superfamily SH07_RS08405 PF01228 Glycine radical SH07_RS08405 PF02901 Pyruvate formate lyase-like SH07_RS08410 PF01226 Formate/nitrite transporter SH07_RS08415 PF18381 YcaO cyclodehydratase C-terminal domain SH07_RS08415 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding SH07_RS08420 PF04239 Protein of unknown function (DUF421) SH07_RS08425 PF00266 Aminotransferase class-V SH07_RS08430 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SH07_RS08435 PF01435 Peptidase family M48 SH07_RS08440 PF02224 Cytidylate kinase SH07_RS08445 PF00575 S1 RNA binding domain SH07_RS08450 PF00216 Bacterial DNA-binding protein SH07_RS08455 PF00753 Metallo-beta-lactamase superfamily SH07_RS08455 PF03772 Competence protein SH07_RS08460 PF00664 ABC transporter transmembrane region SH07_RS08460 PF00005 ABC transporter SH07_RS08465 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SH07_RS08470 PF06224 Winged helix DNA-binding domain SH07_RS08475 PF03966 Trm112p-like protein SH07_RS08480 PF02348 Cytidylyltransferase SH07_RS08485 PF01636 Phosphotransferase enzyme family SH07_RS08490 PF02698 DUF218 domain SH07_RS08495 PF13847 Methyltransferase domain SH07_RS08500 PF17193 MukF C-terminal domain SH07_RS08500 PF17192 MukF middle domain SH07_RS08500 PF03882 MukF winged-helix domain SH07_RS08505 PF04288 MukE-like family SH07_RS08510 PF04310 MukB N-terminal SH07_RS08510 PF16330 MukB hinge domain SH07_RS08515 PF01471 Putative peptidoglycan binding domain SH07_RS08515 PF03734 L,D-transpeptidase catalytic domain SH07_RS08520 PF05951 Bacterial protein of unknown function (DUF882) SH07_RS08525 PF00753 Metallo-beta-lactamase superfamily SH07_RS08530 PF00155 Aminotransferase class I and II SH07_RS08540 PF00267 Gram-negative porin SH07_RS08545 PF00152 tRNA synthetases class II (D, K and N) SH07_RS08545 PF01336 OB-fold nucleic acid binding domain SH07_RS08550 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SH07_RS08550 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SH07_RS08555 PF01433 Peptidase family M1 domain SH07_RS08555 PF17432 Domain of unknown function (DUF3458_C) ARM repeats SH07_RS08555 PF11940 Domain of unknown function (DUF3458) Ig-like fold SH07_RS08560 PF00005 ABC transporter SH07_RS08565 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS08570 PF00296 Luciferase-like monooxygenase SH07_RS08575 PF09084 NMT1/THI5 like SH07_RS08580 PF03358 NADPH-dependent FMN reductase SH07_RS08585 PF00419 Fimbrial protein SH07_RS08590 PF02753 Pili assembly chaperone PapD, C-terminal domain SH07_RS08590 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH07_RS08595 PF00577 Outer membrane usher protein SH07_RS08595 PF13954 PapC N-terminal domain SH07_RS08595 PF13953 PapC C-terminal domain SH07_RS08600 PF00419 Fimbrial protein SH07_RS08605 PF00419 Fimbrial protein SH07_RS08610 PF00419 Fimbrial protein SH07_RS08615 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH07_RS08615 PF02753 Pili assembly chaperone PapD, C-terminal domain SH07_RS08620 PF01180 Dihydroorotate dehydrogenase SH07_RS08625 PF07126 Cell-division protein ZapC SH07_RS08630 PF03473 MOSC domain SH07_RS08630 PF00111 2Fe-2S iron-sulfur cluster binding domain SH07_RS08630 PF03476 MOSC N-terminal beta barrel domain SH07_RS08635 PF01170 Putative RNA methylase family UPF0020 SH07_RS08635 PF10672 S-adenosylmethionine-dependent methyltransferase SH07_RS08635 PF02926 THUMP domain SH07_RS08640 PF16326 ABC transporter C-terminal domain SH07_RS08640 PF00005 ABC transporter SH07_RS08640 PF12848 ABC transporter SH07_RS08645 PF04403 Paraquat-inducible protein A SH07_RS08650 PF02470 MlaD protein SH07_RS08655 PF03886 ABC-type transport auxiliary lipoprotein component SH07_RS08660 PF04957 Ribosome modulation factor SH07_RS08665 PF07977 FabA-like domain SH07_RS08670 PF13654 AAA domain SH07_RS08670 PF05362 Lon protease (S16) C-terminal proteolytic domain SH07_RS08675 PF06303 MatP N-terminal domain SH07_RS08675 PF17414 MatP C-terminal ribbon-helix-helix domain SH07_RS08680 PF00691 OmpA family SH07_RS08680 PF01389 OmpA-like transmembrane domain SH07_RS08690 PF03846 Cell division inhibitor SulA SH07_RS08695 PF04994 TfoX C-terminal domain SH07_RS08695 PF04993 TfoX N-terminal domain SH07_RS08700 PF12805 FUSC-like inner membrane protein yccS SH07_RS08705 PF03733 Inner membrane component domain SH07_RS08710 PF13361 UvrD-like helicase C-terminal domain SH07_RS08710 PF12462 DNA helicase IV / RNA helicase N terminal SH07_RS08710 PF00580 UvrD/REP helicase N-terminal domain SH07_RS08715 PF02142 MGS-like domain SH07_RS08720 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) SH07_RS08730 PF13380 CoA binding domain SH07_RS08735 PF08755 Hemimethylated DNA-binding protein YccV like SH07_RS08740 PF17785 PUA-like domain SH07_RS08740 PF10672 S-adenosylmethionine-dependent methyltransferase SH07_RS08745 PF00708 Acylphosphatase SH07_RS08750 PF04358 DsrC like protein SH07_RS08755 PF01027 Inhibitor of apoptosis-promoting Bax1 SH07_RS08765 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH07_RS08765 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SH07_RS08770 PF00374 Nickel-dependent hydrogenase SH07_RS08775 PF01292 Prokaryotic cytochrome b561 SH07_RS08780 PF01750 Hydrogenase maturation protease SH07_RS08785 PF07449 Hydrogenase-1 expression protein HyaE SH07_RS08790 PF04809 HupH hydrogenase expression protein, C-terminal conserved region SH07_RS08795 PF01654 Cytochrome bd terminal oxidase subunit I SH07_RS08800 PF02322 Cytochrome bd terminal oxidase subunit II SH07_RS08805 PF08173 Membrane bound YbgT-like protein SH07_RS08810 PF00328 Histidine phosphatase superfamily (branch 2) SH07_RS08815 PF13807 G-rich domain on putative tyrosine kinase SH07_RS08815 PF02706 Chain length determinant protein SH07_RS08815 PF13614 AAA domain SH07_RS08820 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH07_RS08825 PF02563 Polysaccharide biosynthesis/export protein SH07_RS08825 PF10531 SLBB domain SH07_RS08825 PF18412 Outer-membrane lipoprotein Wza C-terminal domain SH07_RS08830 PF06082 Exopolysaccharide biosynthesis protein YbjH SH07_RS08835 PF06251 Capsule biosynthesis GfcC SH07_RS08840 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF SH07_RS08855 PF03400 IS1 transposase SH07_RS08860 PF00313 'Cold-shock' DNA-binding domain SH07_RS08865 PF00313 'Cold-shock' DNA-binding domain SH07_RS08870 PF15939 Putative antitoxin of bacterial toxin-antitoxin system SH07_RS08875 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system SH07_RS08880 PF12801 4Fe-4S binding domain SH07_RS08885 PF01627 Hpt domain SH07_RS08885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS08885 PF00072 Response regulator receiver domain SH07_RS08885 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS08885 PF00672 HAMP domain SH07_RS08890 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH07_RS08895 PF00486 Transcriptional regulatory protein, C terminal SH07_RS08895 PF00072 Response regulator receiver domain SH07_RS08900 PF03264 NapC/NirT cytochrome c family, N-terminal region SH07_RS08905 PF18364 Molybdopterin oxidoreductase N-terminal domain SH07_RS08905 PF00384 Molybdopterin oxidoreductase SH07_RS08905 PF01568 Molydopterin dinucleotide binding domain SH07_RS08910 PF02613 Nitrate reductase delta subunit SH07_RS08920 PF01556 DnaJ C terminal domain SH07_RS08920 PF00226 DnaJ domain SH07_RS08930 PF00328 Histidine phosphatase superfamily (branch 2) SH07_RS08935 PF13993 YccJ-like protein SH07_RS08940 PF03358 NADPH-dependent FMN reductase SH07_RS08950 PF10685 Stress-induced bacterial acidophilic repeat motif SH07_RS08955 PF00860 Permease family SH07_RS08960 PF01613 Flavin reductase like domain SH07_RS08965 PF00881 Nitroreductase family SH07_RS08970 PF12697 Alpha/beta hydrolase family SH07_RS08975 PF01042 Endoribonuclease L-PSP SH07_RS08980 PF00857 Isochorismatase family SH07_RS08985 PF00296 Luciferase-like monooxygenase SH07_RS08990 PF08362 YcdC-like protein, C-terminal region SH07_RS08990 PF00440 Bacterial regulatory proteins, tetR family SH07_RS08995 PF01619 Proline dehydrogenase SH07_RS08995 PF14850 DNA-binding domain of Proline dehydrogenase SH07_RS08995 PF18327 Proline utilization A proline dehydrogenase N-terminal domain SH07_RS08995 PF00171 Aldehyde dehydrogenase family SH07_RS09005 PF00474 Sodium:solute symporter family SH07_RS09020 PF13473 Cupredoxin-like domain SH07_RS09020 PF09375 Imelysin SH07_RS09025 PF04261 Dyp-type peroxidase family SH07_RS09035 PF02562 PhoH-like protein SH07_RS09040 PF13994 PgaD-like protein SH07_RS09045 PF00535 Glycosyl transferase family 2 SH07_RS09050 PF14883 Hypothetical glycosyl hydrolase family 13 SH07_RS09050 PF01522 Polysaccharide deacetylase SH07_RS09060 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS09060 PF17158 Membrane-associated sensor, integral membrane domain SH07_RS09065 PF13333 Integrase core domain SH07_RS09065 PF00665 Integrase core domain SH07_RS09065 PF13276 HTH-like domain SH07_RS09070 PF01527 Transposase SH07_RS09095 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH07_RS09100 PF02811 PHP domain SH07_RS09105 PF02613 Nitrate reductase delta subunit SH07_RS09110 PF06496 Protein of unknown function (DUF1097) SH07_RS09115 PF03783 Curli production assembly/transport component CsgG SH07_RS09120 PF10614 Type VIII secretion system (T8SS), CsgF protein SH07_RS09125 PF10627 Curli assembly protein CsgE SH07_RS09130 PF00196 Bacterial regulatory proteins, luxR family SH07_RS09140 PF07012 Curlin associated repeat SH07_RS09145 PF07012 Curlin associated repeat SH07_RS09150 PF10610 Thin aggregative fimbriae synthesis protein SH07_RS09160 PF01661 Macro domain SH07_RS09165 PF13091 PLD-like domain SH07_RS09170 PF01757 Acyltransferase family SH07_RS09185 PF04349 Periplasmic glucan biosynthesis protein, MdoG SH07_RS09190 PF00535 Glycosyl transferase family 2 SH07_RS09195 PF07119 Protein of unknown function (DUF1375) SH07_RS09200 PF13984 MsyB protein SH07_RS09210 PF07690 Major Facilitator Superfamily SH07_RS09215 PF03279 Bacterial lipid A biosynthesis acyltransferase SH07_RS09220 PF00581 Rhodanese-like domain SH07_RS09220 PF17773 UPF0176 acylphosphatase like domain SH07_RS09220 PF12368 Rhodanase C-terminal SH07_RS09225 PF04264 YceI-like domain SH07_RS09230 PF01292 Prokaryotic cytochrome b561 SH07_RS09235 PF10968 Protein of unknown function (DUF2770) SH07_RS09240 PF01266 FAD dependent oxidoreductase SH07_RS09245 PF13991 BssS protein family SH07_RS09250 PF06183 DinI-like family SH07_RS09255 PF01979 Amidohydrolase family SH07_RS09260 PF07273 Protein of unknown function (DUF1439) SH07_RS09265 PF13417 Glutathione S-transferase, N-terminal domain SH07_RS09265 PF04399 Glutaredoxin 2, C terminal domain SH07_RS09270 PF07690 Major Facilitator Superfamily SH07_RS09275 PF13302 Acetyltransferase (GNAT) domain SH07_RS09280 PF04337 Protein of unknown function, DUF480 SH07_RS09285 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH07_RS09290 PF03023 Lipid II flippase MurJ SH07_RS09295 PF05130 FlgN protein SH07_RS09300 PF04316 Anti-sigma-28 factor, FlgM SH07_RS09305 PF13144 Chaperone for flagella basal body P-ring formation SH07_RS09310 PF00460 Flagella basal body rod protein SH07_RS09315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH07_RS09315 PF00460 Flagella basal body rod protein SH07_RS09320 PF13861 FlgD Tudor-like domain SH07_RS09320 PF03963 Flagellar hook capping protein - N-terminal region SH07_RS09320 PF13860 FlgD Ig-like domain SH07_RS09325 PF00460 Flagella basal body rod protein SH07_RS09325 PF07559 Flagellar basal body protein FlaE SH07_RS09325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH07_RS09330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH07_RS09330 PF00460 Flagella basal body rod protein SH07_RS09335 PF00460 Flagella basal body rod protein SH07_RS09335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH07_RS09340 PF02107 Flagellar L-ring protein SH07_RS09345 PF02119 Flagellar P-ring protein SH07_RS09350 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH07_RS09350 PF10135 Rod binding protein SH07_RS09355 PF00460 Flagella basal body rod protein SH07_RS09355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH07_RS09360 PF00669 Bacterial flagellin N-terminal helical region SH07_RS09365 PF10150 Ribonuclease E/G family SH07_RS09365 PF12111 Polyribonucleotide phosphorylase C terminal SH07_RS09365 PF00575 S1 RNA binding domain SH07_RS09375 PF00849 RNA pseudouridylate synthase SH07_RS09375 PF01479 S4 domain SH07_RS09380 PF02545 Maf-like protein SH07_RS09385 PF02620 Large ribosomal RNA subunit accumulation protein YceD SH07_RS09390 PF01783 Ribosomal L32p protein family SH07_RS09395 PF02504 Fatty acid synthesis protein SH07_RS09400 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SH07_RS09400 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SH07_RS09405 PF00698 Acyl transferase domain SH07_RS09415 PF00550 Phosphopantetheine attachment site SH07_RS09420 PF02801 Beta-ketoacyl synthase, C-terminal domain SH07_RS09420 PF00109 Beta-ketoacyl synthase, N-terminal domain SH07_RS09425 PF01063 Amino-transferase class IV SH07_RS09430 PF02618 YceG-like family SH07_RS09435 PF02223 Thymidylate kinase SH07_RS09440 PF09115 DNA polymerase III, delta subunit, C terminal SH07_RS09445 PF01026 TatD related DNase SH07_RS09450 PF02378 Phosphotransferase system, EIIC SH07_RS09450 PF00367 phosphotransferase system, EIIB SH07_RS09455 PF00593 TonB dependent receptor SH07_RS09455 PF07715 TonB-dependent Receptor Plug Domain SH07_RS09460 PF01230 HIT domain SH07_RS09465 PF07233 Protein of unknown function (DUF1425) SH07_RS09470 PF13036 Peptidoglycan-synthase activator LpoB SH07_RS09475 PF01636 Phosphotransferase enzyme family SH07_RS09480 PF00933 Glycosyl hydrolase family 3 N terminal domain SH07_RS09485 PF05728 Uncharacterised protein family (UPF0227) SH07_RS09490 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH07_RS09495 PF05433 Glycine zipper 2TM domain SH07_RS09500 PF00440 Bacterial regulatory proteins, tetR family SH07_RS09505 PF07338 Protein of unknown function (DUF1471) SH07_RS09510 PF01476 LysM domain SH07_RS09510 PF17969 L,D-transpeptidase C-terminal domain SH07_RS09510 PF03734 L,D-transpeptidase catalytic domain SH07_RS09515 PF03461 TRCF domain SH07_RS09515 PF17757 UvrB interaction domain SH07_RS09515 PF02559 CarD-like/TRCF domain SH07_RS09515 PF00271 Helicase conserved C-terminal domain SH07_RS09515 PF00270 DEAD/DEAH box helicase SH07_RS09520 PF01757 Acyltransferase family SH07_RS09525 PF02687 FtsX-like permease family SH07_RS09525 PF12704 MacB-like periplasmic core domain SH07_RS09530 PF00005 ABC transporter SH07_RS09535 PF12704 MacB-like periplasmic core domain SH07_RS09535 PF02687 FtsX-like permease family SH07_RS09540 PF00480 ROK family SH07_RS09545 PF02146 Sir2 family SH07_RS09550 PF04536 TPM domain SH07_RS09555 PF12158 Protein of unknown function (DUF3592) SH07_RS09560 PF13416 Bacterial extracellular solute-binding protein SH07_RS09565 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS09570 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS09575 PF08402 TOBE domain SH07_RS09575 PF00005 ABC transporter SH07_RS09585 PF01546 Peptidase family M20/M25/M40 SH07_RS09585 PF07687 Peptidase dimerisation domain SH07_RS09590 PF08007 Cupin superfamily protein SH07_RS09595 PF08918 PhoQ Sensor SH07_RS09595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS09600 PF00072 Response regulator receiver domain SH07_RS09600 PF00486 Transcriptional regulatory protein, C terminal SH07_RS09605 PF00206 Lyase SH07_RS09605 PF08328 Adenylosuccinate lyase C-terminal SH07_RS09610 PF04356 Protein of unknown function (DUF489) SH07_RS09620 PF00293 NUDIX domain SH07_RS09625 PF00849 RNA pseudouridylate synthase SH07_RS09630 PF00180 Isocitrate/isopropylmalate dehydrogenase SH07_RS09645 PF07166 Protein of unknown function (DUF1398) SH07_RS09650 PF13411 MerR HTH family regulatory protein SH07_RS09655 PF04940 Sensors of blue-light using FAD SH07_RS09655 PF00563 EAL domain SH07_RS09660 PF10798 Biofilm development protein YmgB/AriR SH07_RS09670 PF10798 Biofilm development protein YmgB/AriR SH07_RS09680 PF12792 CSS motif domain associated with EAL SH07_RS09680 PF00563 EAL domain SH07_RS09705 PF16456 YmgD protein SH07_RS09710 PF13436 Glycine-zipper domain SH07_RS09725 PF03776 Septum formation topological specificity factor MinE SH07_RS09730 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SH07_RS09735 PF03775 Septum formation inhibitor MinC, C-terminal domain SH07_RS09735 PF05209 Septum formation inhibitor MinC, N-terminal domain SH07_RS09740 PF05666 Fels-1 Prophage Protein-like SH07_RS09745 PF04151 Bacterial pre-peptidase C-terminal domain SH07_RS09755 PF05166 YcgL domain SH07_RS09760 PF01557 Fumarylacetoacetate (FAA) hydrolase family SH07_RS09765 PF03692 Putative zinc- or iron-chelating domain SH07_RS09770 PF06109 Haemolysin E (HlyE) SH07_RS09775 PF00717 Peptidase S24-like SH07_RS09780 PF11799 impB/mucB/samB family C-terminal domain SH07_RS09780 PF00817 impB/mucB/samB family SH07_RS09780 PF13438 Domain of unknown function (DUF4113) SH07_RS09780 PF11798 IMS family HHH motif SH07_RS09785 PF02600 Disulfide bond formation protein DsbB SH07_RS09790 PF06450 Bacterial Na+/H+ antiporter B (NhaB) SH07_RS09795 PF00392 Bacterial regulatory proteins, gntR family SH07_RS09795 PF07840 FadR C-terminal domain SH07_RS09800 PF04293 SpoVR like protein SH07_RS09805 PF01266 FAD dependent oxidoreductase SH07_RS09810 PF00842 Alanine racemase, C-terminal domain SH07_RS09810 PF01168 Alanine racemase, N-terminal domain SH07_RS09815 PF03471 Transporter associated domain SH07_RS09815 PF00999 Sodium/hydrogen exchanger family SH07_RS09815 PF02080 TrkA-C domain SH07_RS09820 PF02016 LD-carboxypeptidase N-terminal domain SH07_RS09820 PF17676 LD-carboxypeptidase C-terminal domain SH07_RS09825 PF01464 Transglycosylase SLT domain SH07_RS09830 PF07238 PilZ domain SH07_RS09830 PF07317 Flagellar regulator YcgR SH07_RS09835 PF04226 Transglycosylase associated protein SH07_RS09845 PF01204 Trehalase SH07_RS09850 PF00391 PEP-utilising enzyme, mobile domain SH07_RS09850 PF00381 PTS HPr component phosphorylation site SH07_RS09850 PF05524 PEP-utilising enzyme, N-terminal SH07_RS09850 PF03610 PTS system fructose IIA component SH07_RS09855 PF02734 DAK2 domain SH07_RS09860 PF02733 Dak1 domain SH07_RS09865 PF00158 Sigma-54 interaction domain SH07_RS09865 PF02954 Bacterial regulatory protein, Fis family SH07_RS09865 PF00989 PAS fold SH07_RS09870 PF03797 Autotransporter beta-domain SH07_RS09870 PF03212 Pertactin SH07_RS09880 PF06071 Protein of unknown function (DUF933) SH07_RS09880 PF01926 50S ribosome-binding GTPase SH07_RS09885 PF01195 Peptidyl-tRNA hydrolase SH07_RS09890 PF10762 Protein of unknown function (DUF2583) SH07_RS09895 PF01740 STAS domain SH07_RS09895 PF00916 Sulfate permease family SH07_RS09900 PF14572 Phosphoribosyl synthetase-associated domain SH07_RS09900 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SH07_RS09905 PF00288 GHMP kinases N terminal domain SH07_RS09905 PF08544 GHMP kinases C terminal SH07_RS09910 PF03550 Outer membrane lipoprotein LolB SH07_RS09915 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SH07_RS09915 PF01488 Shikimate / quinate 5-dehydrogenase SH07_RS09915 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SH07_RS09920 PF03462 PCRF domain SH07_RS09920 PF00472 RF-1 domain SH07_RS09925 PF17827 PrmC N-terminal domain SH07_RS09925 PF13847 Methyltransferase domain SH07_RS09930 PF04247 Invasion gene expression up-regulator, SirB SH07_RS09935 PF13369 Transglutaminase-like superfamily SH07_RS09940 PF00793 DAHP synthetase I family SH07_RS09945 PF13940 Toxin Ldr, type I toxin-antitoxin system SH07_RS09950 PF13940 Toxin Ldr, type I toxin-antitoxin system SH07_RS09955 PF01699 Sodium/calcium exchanger protein SH07_RS09960 PF06150 ChaB SH07_RS09965 PF04752 ChaC-like protein SH07_RS09970 PF02635 DsrE/DsrF-like family SH07_RS09975 PF11924 Inverse autotransporter, beta-domain SH07_RS09980 PF00196 Bacterial regulatory proteins, luxR family SH07_RS09980 PF00072 Response regulator receiver domain SH07_RS09985 PF00672 HAMP domain SH07_RS09985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS09985 PF07730 Histidine kinase SH07_RS09985 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SH07_RS09995 PF07690 Major Facilitator Superfamily SH07_RS10000 PF14710 Respiratory nitrate reductase alpha N-terminal SH07_RS10000 PF01568 Molydopterin dinucleotide binding domain SH07_RS10000 PF00384 Molybdopterin oxidoreductase SH07_RS10005 PF13247 4Fe-4S dicluster domain SH07_RS10005 PF14711 Respiratory nitrate reductase beta C-terminal SH07_RS10010 PF02613 Nitrate reductase delta subunit SH07_RS10015 PF02665 Nitrate reductase gamma subunit SH07_RS10035 PF01842 ACT domain SH07_RS10035 PF00551 Formyl transferase SH07_RS10040 PF02810 SEC-C motif SH07_RS10045 PF01734 Patatin-like phospholipase SH07_RS10050 PF00072 Response regulator receiver domain SH07_RS10055 PF00483 Nucleotidyl transferase SH07_RS10060 PF00816 H-NS histone family SH07_RS10065 PF00265 Thymidine kinase SH07_RS10070 PF13006 Insertion element 4 transposase N-terminal SH07_RS10070 PF01609 Transposase DDE domain SH07_RS10080 PF00171 Aldehyde dehydrogenase family SH07_RS10080 PF00465 Iron-containing alcohol dehydrogenase SH07_RS10085 PF01914 MarC family integral membrane protein SH07_RS10090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH07_RS10095 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS10100 PF12911 N-terminal TM domain of oligopeptide transport permease C SH07_RS10100 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS10105 PF00005 ABC transporter SH07_RS10105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH07_RS10110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH07_RS10110 PF00005 ABC transporter SH07_RS10115 PF04269 Protein of unknown function, DUF440 SH07_RS10120 PF13396 Phospholipase_D-nuclease N-terminal SH07_RS10120 PF13091 PLD-like domain SH07_RS10130 PF07885 Ion channel SH07_RS10130 PF02254 TrkA-N domain SH07_RS10135 PF03795 YCII-related domain SH07_RS10140 PF03544 Gram-negative bacterial TonB protein C-terminal SH07_RS10145 PF03061 Thioesterase superfamily SH07_RS10150 PF04279 Intracellular septation protein A SH07_RS10160 PF03922 OmpW family SH07_RS10165 PF05974 Domain of unknown function (DUF892) SH07_RS10170 PF05974 Domain of unknown function (DUF892) SH07_RS10175 PF10685 Stress-induced bacterial acidophilic repeat motif SH07_RS10180 PF00290 Tryptophan synthase alpha chain SH07_RS10185 PF00291 Pyridoxal-phosphate dependent enzyme SH07_RS10190 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SH07_RS10190 PF00218 Indole-3-glycerol phosphate synthase SH07_RS10195 PF00591 Glycosyl transferase family, a/b domain SH07_RS10195 PF00117 Glutamine amidotransferase class-I SH07_RS10195 PF02885 Glycosyl transferase family, helical bundle domain SH07_RS10200 PF04715 Anthranilate synthase component I, N terminal region SH07_RS10200 PF00425 chorismate binding enzyme SH07_RS10205 PF02811 PHP domain SH07_RS10210 PF01300 Telomere recombination SH07_RS10215 PF09972 Predicted membrane protein (DUF2207) SH07_RS10220 PF01479 S4 domain SH07_RS10220 PF00849 RNA pseudouridylate synthase SH07_RS10225 PF12557 Cob(I)alamin adenosyltransferase N terminal SH07_RS10225 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP SH07_RS10230 PF00106 short chain dehydrogenase SH07_RS10240 PF01343 Peptidase family S49 SH07_RS10240 PF08496 Peptidase family S49 N-terminal SH07_RS10245 PF10692 Protein of unknown function (DUF2498) SH07_RS10255 PF01751 Toprim domain SH07_RS10255 PF01131 DNA topoisomerase SH07_RS10255 PF08272 Topoisomerase I zinc-ribbon-like SH07_RS10255 PF01396 Topoisomerase DNA binding C4 zinc finger SH07_RS10260 PF03466 LysR substrate binding domain SH07_RS10260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS10280 PF00694 Aconitase C-terminal domain SH07_RS10280 PF00330 Aconitase family (aconitate hydratase) SH07_RS10285 PF00925 GTP cyclohydrolase II SH07_RS10290 PF01569 PAP2 superfamily SH07_RS10295 PF06305 Lipopolysaccharide assembly protein A domain SH07_RS10300 PF18073 Rubredoxin metal binding domain SH07_RS10305 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH07_RS10310 PF01253 Translation initiation factor SUI1 SH07_RS10315 PF05433 Glycine zipper 2TM domain SH07_RS10320 PF08220 DeoR-like helix-turn-helix domain SH07_RS10320 PF00455 DeoR C terminal sensor domain SH07_RS10330 PF13426 PAS domain SH07_RS10330 PF00563 EAL domain SH07_RS10330 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS10340 PF00773 RNB domain SH07_RS10340 PF17876 Cold shock domain SH07_RS10340 PF08206 Ribonuclease B OB domain SH07_RS10340 PF00575 S1 RNA binding domain SH07_RS10355 PF04480 Protein of unknown function (DUF559) SH07_RS10360 PF00005 ABC transporter SH07_RS10365 PF00005 ABC transporter SH07_RS10365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH07_RS10370 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS10370 PF12911 N-terminal TM domain of oligopeptide transport permease C SH07_RS10375 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS10380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH07_RS10390 PF10820 Protein of unknown function (DUF2543) SH07_RS10395 PF00324 Amino acid permease SH07_RS10400 PF00120 Glutamine synthetase, catalytic domain SH07_RS10405 PF07722 Peptidase C26 SH07_RS10410 PF01381 Helix-turn-helix SH07_RS10410 PF07883 Cupin domain SH07_RS10415 PF00171 Aldehyde dehydrogenase family SH07_RS10420 PF01266 FAD dependent oxidoreductase SH07_RS10425 PF00202 Aminotransferase class-III SH07_RS10430 PF02954 Bacterial regulatory protein, Fis family SH07_RS10430 PF00158 Sigma-54 interaction domain SH07_RS10435 PF04012 PspA/IM30 family SH07_RS10440 PF06667 Phage shock protein B SH07_RS10445 PF04024 PspC domain SH07_RS10450 PF09584 Phage shock protein PspD (Phageshock_PspD) SH07_RS10455 PF00581 Rhodanese-like domain SH07_RS10460 PF00128 Alpha amylase, catalytic domain SH07_RS10465 PF01547 Bacterial extracellular solute-binding protein SH07_RS10470 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS10475 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS10480 PF00107 Zinc-binding dehydrogenase SH07_RS10485 PF01261 Xylose isomerase-like TIM barrel SH07_RS10490 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH07_RS10490 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH07_RS10495 PF03632 Glycosyl hydrolase family 65 central catalytic domain SH07_RS10495 PF03633 Glycosyl hydrolase family 65, C-terminal domain SH07_RS10495 PF03636 Glycosyl hydrolase family 65, N-terminal domain SH07_RS10500 PF13419 Haloacid dehalogenase-like hydrolase SH07_RS10510 PF09381 Outer membrane protein G (OmpG) SH07_RS10515 PF00356 Bacterial regulatory proteins, lacI family SH07_RS10515 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH07_RS10520 PF04317 YcjX-like family, DUF463 SH07_RS10525 PF05128 Domain of unknown function (DUF697) SH07_RS10530 PF18024 Helix-turn-helix domain SH07_RS10530 PF13188 PAS domain SH07_RS10530 PF00158 Sigma-54 interaction domain SH07_RS10535 PF08534 Redoxin SH07_RS10540 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH07_RS10540 PF13378 Enolase C-terminal domain-like SH07_RS10545 PF00246 Zinc carboxypeptidase SH07_RS10555 PF12146 Serine aminopeptidase, S33 SH07_RS10560 PF03466 LysR substrate binding domain SH07_RS10560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS10570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH07_RS10575 PF00924 Mechanosensitive ion channel SH07_RS10580 PF05598 Transposase domain (DUF772) SH07_RS10580 PF01609 Transposase DDE domain SH07_RS10585 PF10749 Protein of unknown function (DUF2534) SH07_RS10590 PF00582 Universal stress protein family SH07_RS10595 PF00325 Bacterial regulatory proteins, crp family SH07_RS10595 PF00027 Cyclic nucleotide-binding domain SH07_RS10600 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH07_RS10600 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SH07_RS10605 PF03806 AbgT putative transporter family SH07_RS10615 PF01546 Peptidase family M20/M25/M40 SH07_RS10620 PF01546 Peptidase family M20/M25/M40 SH07_RS10620 PF07687 Peptidase dimerisation domain SH07_RS10625 PF03466 LysR substrate binding domain SH07_RS10625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS10635 PF01713 Smr domain SH07_RS10640 PF08448 PAS fold SH07_RS10640 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS10645 PF01544 CorA-like Mg2+ transporter protein SH07_RS10655 PF00271 Helicase conserved C-terminal domain SH07_RS10655 PF00270 DEAD/DEAH box helicase SH07_RS10655 PF03880 DbpA RNA binding domain SH07_RS10660 PF01171 PP-loop family SH07_RS10665 PF00589 Phage integrase family SH07_RS10665 PF12167 Arm DNA-binding domain SH07_RS10670 PF06806 Putative excisionase (DUF1233) SH07_RS10675 PF06688 Protein of unknown function (DUF1187) SH07_RS10685 PF03837 RecT family SH07_RS10690 PF12684 PDDEXK-like domain of unknown function (DUF3799) SH07_RS10690 PF06630 Enterobacterial exodeoxyribonuclease VIII SH07_RS10700 PF04181 Rtr1/RPAP2 family SH07_RS10710 PF14163 Super-infection exclusion protein B SH07_RS10720 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT SH07_RS10725 PF06254 Putative bacterial toxin ydaT SH07_RS10730 PF07120 Protein of unknown function (DUF1376) SH07_RS10735 PF01695 IstB-like ATP binding protein SH07_RS10740 PF07789 Protein of unknown function (DUF1627) SH07_RS10745 PF03245 Bacteriophage Rz lysis protein SH07_RS10750 PF02386 Cation transport protein SH07_RS10755 PF02195 ParB-like nuclease domain SH07_RS10770 PF06791 Prophage tail length tape measure protein SH07_RS10775 PF06316 Enterobacterial Ail/Lom protein SH07_RS10780 PF05598 Transposase domain (DUF772) SH07_RS10780 PF01609 Transposase DDE domain SH07_RS10785 PF13505 Outer membrane protein beta-barrel domain SH07_RS10800 PF07484 Phage Tail Collar Domain SH07_RS10800 PF03335 Phage tail fibre repeat SH07_RS10800 PF08400 Prophage tail fibre N-terminal SH07_RS10805 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH07_RS10810 PF00239 Resolvase, N terminal domain SH07_RS10810 PF02796 Helix-turn-helix domain of resolvase SH07_RS10820 PF00582 Universal stress protein family SH07_RS10825 PF00267 Gram-negative porin SH07_RS10830 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SH07_RS10830 PF10371 Domain of unknown function SH07_RS10830 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SH07_RS10830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH07_RS10830 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SH07_RS10835 PF03891 Domain of unknown function (DUF333) SH07_RS10840 PF03724 META domain SH07_RS10845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH07_RS10845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH07_RS10850 PF11739 Dicarboxylate transport SH07_RS10855 PF13617 YnbE-like lipoprotein SH07_RS10860 PF07027 Protein of unknown function (DUF1318) SH07_RS10865 PF14525 AraC-binding-like domain SH07_RS10865 PF12833 Helix-turn-helix domain SH07_RS10870 PF00171 Aldehyde dehydrogenase family SH07_RS10875 PF07833 Copper amine oxidase N-terminal domain SH07_RS10875 PF02728 Copper amine oxidase, N3 domain SH07_RS10875 PF01179 Copper amine oxidase, enzyme domain SH07_RS10875 PF02727 Copper amine oxidase, N2 domain SH07_RS10880 PF01575 MaoC like domain SH07_RS10880 PF00171 Aldehyde dehydrogenase family SH07_RS10885 PF05138 Phenylacetic acid catabolic protein SH07_RS10890 PF06243 Phenylacetic acid degradation B SH07_RS10895 PF05138 Phenylacetic acid catabolic protein SH07_RS10900 PF01883 Iron-sulfur cluster assembly protein SH07_RS10905 PF00175 Oxidoreductase NAD-binding domain SH07_RS10905 PF00111 2Fe-2S iron-sulfur cluster binding domain SH07_RS10905 PF00970 Oxidoreductase FAD-binding domain SH07_RS10910 PF00378 Enoyl-CoA hydratase/isomerase SH07_RS10915 PF00378 Enoyl-CoA hydratase/isomerase SH07_RS10920 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH07_RS10920 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain SH07_RS10920 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH07_RS10925 PF03061 Thioesterase superfamily SH07_RS10930 PF00108 Thiolase, N-terminal domain SH07_RS10930 PF02803 Thiolase, C-terminal domain SH07_RS10935 PF00501 AMP-binding enzyme SH07_RS10935 PF14535 AMP-binding enzyme C-terminal domain SH07_RS10940 PF08223 PaaX-like protein C-terminal domain SH07_RS10940 PF07848 PaaX-like protein SH07_RS10945 PF00132 Bacterial transferase hexapeptide (six repeats) SH07_RS10955 PF13276 HTH-like domain SH07_RS10955 PF00665 Integrase core domain SH07_RS10960 PF01527 Transposase SH07_RS10965 PF13936 Helix-turn-helix domain SH07_RS10965 PF00665 Integrase core domain SH07_RS10975 PF00248 Aldo/keto reductase family SH07_RS10980 PF10971 Protein of unknown function (DUF2773) SH07_RS10985 PF01066 CDP-alcohol phosphatidyltransferase SH07_RS10995 PF12147 Putative methyltransferase SH07_RS10995 PF12146 Serine aminopeptidase, S33 SH07_RS11000 PF00782 Dual specificity phosphatase, catalytic domain SH07_RS11005 PF02525 Flavodoxin-like fold SH07_RS11010 PF00270 DEAD/DEAH box helicase SH07_RS11010 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold SH07_RS11010 PF00271 Helicase conserved C-terminal domain SH07_RS11010 PF04408 Helicase associated domain (HA2) SH07_RS11010 PF11898 Domain of unknown function (DUF3418) SH07_RS11015 PF02698 DUF218 domain SH07_RS11020 PF00171 Aldehyde dehydrogenase family SH07_RS11025 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH07_RS11025 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH07_RS11030 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH07_RS11030 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH07_RS11035 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH07_RS11035 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH07_RS11040 PF01292 Prokaryotic cytochrome b561 SH07_RS11050 PF01848 Hok/gef family SH07_RS11055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH07_RS11055 PF02203 Tar ligand binding domain homologue SH07_RS11055 PF00672 HAMP domain SH07_RS11060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS11060 PF03466 LysR substrate binding domain SH07_RS11065 PF07063 Domain of unknown function (DUF1338) SH07_RS11070 PF04349 Periplasmic glucan biosynthesis protein, MdoG SH07_RS11080 PF04325 Protein of unknown function (DUF465) SH07_RS11085 PF13302 Acetyltransferase (GNAT) domain SH07_RS11090 PF18836 Beta solenoid repeat from YDCK SH07_RS11095 PF03595 Voltage-dependent anion channel SH07_RS11100 PF03848 Tellurite resistance protein TehB SH07_RS11105 PF11769 Protein of unknown function (DUF3313) SH07_RS11115 PF01797 Transposase IS200 like SH07_RS11120 PF12323 Helix-turn-helix domain SH07_RS11120 PF01385 Probable transposase SH07_RS11120 PF07282 Putative transposase DNA-binding domain SH07_RS11125 PF03594 Benzoate membrane transport protein SH07_RS11130 PF01381 Helix-turn-helix SH07_RS11130 PF07883 Cupin domain SH07_RS11135 PF12392 Collagenase SH07_RS11135 PF01136 Peptidase family U32 SH07_RS11140 PF10829 Protein of unknown function (DUF2554) SH07_RS11145 PF07927 HicA toxin of bacterial toxin-antitoxin, SH07_RS11150 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system SH07_RS11150 PF01381 Helix-turn-helix SH07_RS11155 PF00392 Bacterial regulatory proteins, gntR family SH07_RS11155 PF00155 Aminotransferase class I and II SH07_RS11160 PF13416 Bacterial extracellular solute-binding protein SH07_RS11165 PF00005 ABC transporter SH07_RS11165 PF08402 TOBE domain SH07_RS11170 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS11175 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS11180 PF00171 Aldehyde dehydrogenase family SH07_RS11190 PF10753 Toxin GhoT_OrtT SH07_RS11195 PF10735 Protein of unknown function (DUF2526) SH07_RS11200 PF04657 Putative inner membrane exporter, YdcZ SH07_RS11205 PF00583 Acetyltransferase (GNAT) family SH07_RS11210 PF00107 Zinc-binding dehydrogenase SH07_RS11210 PF16884 N-terminal domain of oxidoreductase SH07_RS11215 PF07729 FCD domain SH07_RS11215 PF00392 Bacterial regulatory proteins, gntR family SH07_RS11220 PF00593 TonB dependent receptor SH07_RS11220 PF07715 TonB-dependent Receptor Plug Domain SH07_RS11230 PF00324 Amino acid permease SH07_RS11235 PF13417 Glutathione S-transferase, N-terminal domain SH07_RS11240 PF17520 Family of unknown function (DUF5445) SH07_RS11245 PF03527 RHS protein SH07_RS11255 PF13808 DDE_Tnp_1-associated SH07_RS11255 PF01609 Transposase DDE domain SH07_RS11260 PF01609 Transposase DDE domain SH07_RS11260 PF13808 DDE_Tnp_1-associated SH07_RS11265 PF01361 Tautomerase enzyme SH07_RS11270 PF01613 Flavin reductase like domain SH07_RS11275 PF00797 N-acetyltransferase SH07_RS11280 PF02567 Phenazine biosynthesis-like protein SH07_RS11285 PF02665 Nitrate reductase gamma subunit SH07_RS11290 PF02613 Nitrate reductase delta subunit SH07_RS11295 PF14711 Respiratory nitrate reductase beta C-terminal SH07_RS11295 PF13247 4Fe-4S dicluster domain SH07_RS11300 PF01568 Molydopterin dinucleotide binding domain SH07_RS11300 PF14710 Respiratory nitrate reductase alpha N-terminal SH07_RS11300 PF00384 Molybdopterin oxidoreductase SH07_RS11305 PF07690 Major Facilitator Superfamily SH07_RS11315 PF00267 Gram-negative porin SH07_RS11320 PF00892 EamA-like transporter family SH07_RS11325 PF00384 Molybdopterin oxidoreductase SH07_RS11325 PF01568 Molydopterin dinucleotide binding domain SH07_RS11325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS11330 PF01568 Molydopterin dinucleotide binding domain SH07_RS11330 PF00384 Molybdopterin oxidoreductase SH07_RS11330 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS11335 PF09163 Formate dehydrogenase N, transmembrane SH07_RS11335 PF12800 4Fe-4S binding domain SH07_RS11335 PF13247 4Fe-4S dicluster domain SH07_RS11340 PF01292 Prokaryotic cytochrome b561 SH07_RS11345 PF01381 Helix-turn-helix SH07_RS11350 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS11350 PF00107 Zinc-binding dehydrogenase SH07_RS11355 PF00390 Malic enzyme, N-terminal domain SH07_RS11355 PF03949 Malic enzyme, NAD binding domain SH07_RS11360 PF08136 30S ribosomal protein subunit S22 family SH07_RS11365 PF10684 Putative biofilm-dependent modulation protein SH07_RS11370 PF02566 OsmC-like protein SH07_RS11375 PF00005 ABC transporter SH07_RS11375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH07_RS11380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH07_RS11380 PF00005 ABC transporter SH07_RS11385 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS11385 PF12911 N-terminal TM domain of oligopeptide transport permease C SH07_RS11390 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS11395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH07_RS11400 PF01427 D-ala-D-ala dipeptidase SH07_RS11405 PF00563 EAL domain SH07_RS11405 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS11405 PF13426 PAS domain SH07_RS11410 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS11415 PF02638 Glycosyl hydrolase-like 10 SH07_RS11420 PF13520 Amino acid permease SH07_RS11425 PF00282 Pyridoxal-dependent decarboxylase conserved domain SH07_RS11435 PF05193 Peptidase M16 inactive domain SH07_RS11435 PF00675 Insulinase (Peptidase family M16) SH07_RS11440 PF07715 TonB-dependent Receptor Plug Domain SH07_RS11445 PF00005 ABC transporter SH07_RS11445 PF06472 ABC transporter transmembrane region 2 SH07_RS11450 PF13186 Iron-sulfur cluster-binding domain SH07_RS11450 PF04055 Radical SAM superfamily SH07_RS11455 PF00884 Sulfatase SH07_RS11460 PF12833 Helix-turn-helix domain SH07_RS11465 PF17073 Two-component-system connector protein SH07_RS11470 PF00384 Molybdopterin oxidoreductase SH07_RS11475 PF09160 FimH, mannose binding SH07_RS11480 PF00419 Fimbrial protein SH07_RS11485 PF00419 Fimbrial protein SH07_RS11490 PF13953 PapC C-terminal domain SH07_RS11490 PF00577 Outer membrane usher protein SH07_RS11500 PF07804 HipA-like C-terminal domain SH07_RS11500 PF13657 HipA N-terminal domain SH07_RS11505 PF01381 Helix-turn-helix SH07_RS11510 PF03797 Autotransporter beta-domain SH07_RS11515 PF13018 Extended Signal Peptide of Type V secretion system SH07_RS11520 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH07_RS11520 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH07_RS11525 PF04198 Putative sugar-binding domain SH07_RS11530 PF00005 ABC transporter SH07_RS11535 PF02653 Branched-chain amino acid transport system / permease component SH07_RS11540 PF02653 Branched-chain amino acid transport system / permease component SH07_RS11545 PF13407 Periplasmic binding protein domain SH07_RS11550 PF01791 DeoC/LacD family aldolase SH07_RS11555 PF03992 Antibiotic biosynthesis monooxygenase SH07_RS11560 PF13649 Methyltransferase domain SH07_RS11565 PF01062 Bestrophin, RFP-TM, chloride channel SH07_RS11575 PF08125 Mannitol dehydrogenase C-terminal domain SH07_RS11575 PF01232 Mannitol dehydrogenase Rossmann domain SH07_RS11580 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS11585 PF13811 Domain of unknown function (DUF4186) SH07_RS11590 PF04960 Glutaminase SH07_RS11595 PF00171 Aldehyde dehydrogenase family SH07_RS11600 PF03466 LysR substrate binding domain SH07_RS11600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS11610 PF07690 Major Facilitator Superfamily SH07_RS11615 PF01914 MarC family integral membrane protein SH07_RS11620 PF01047 MarR family SH07_RS11625 PF12833 Helix-turn-helix domain SH07_RS11630 PF13999 MarB protein SH07_RS11635 PF00892 EamA-like transporter family SH07_RS11640 PF07690 Major Facilitator Superfamily SH07_RS11650 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS11655 PF04076 Bacterial OB fold (BOF) protein SH07_RS11660 PF02464 Competence-damaged protein SH07_RS11665 PF01432 Peptidase family M3 SH07_RS11670 PF00106 short chain dehydrogenase SH07_RS11675 PF00392 Bacterial regulatory proteins, gntR family SH07_RS11675 PF07729 FCD domain SH07_RS11680 PF14001 YdfZ protein SH07_RS11685 PF08125 Mannitol dehydrogenase C-terminal domain SH07_RS11685 PF01232 Mannitol dehydrogenase Rossmann domain SH07_RS11690 PF07690 Major Facilitator Superfamily SH07_RS11690 PF00083 Sugar (and other) transporter SH07_RS11700 PF02796 Helix-turn-helix domain of resolvase SH07_RS11700 PF00239 Resolvase, N terminal domain SH07_RS11705 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH07_RS11710 PF03335 Phage tail fibre repeat SH07_RS11710 PF07484 Phage Tail Collar Domain SH07_RS11715 PF07471 Phage DNA packaging protein Nu1 SH07_RS11720 PF13132 Domain of unknown function (DUF3950) SH07_RS11725 PF07166 Protein of unknown function (DUF1398) SH07_RS11730 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system SH07_RS11740 PF00313 'Cold-shock' DNA-binding domain SH07_RS11745 PF10721 Protein of unknown function (DUF2514) SH07_RS11750 PF00959 Phage lysozyme SH07_RS11755 PF07041 Protein of unknown function (DUF1327) SH07_RS11760 PF04971 Bacteriophage P21 holin S SH07_RS11765 PF00313 'Cold-shock' DNA-binding domain SH07_RS11770 PF00313 'Cold-shock' DNA-binding domain SH07_RS11775 PF03589 Antitermination protein SH07_RS11780 PF06147 Protein of unknown function (DUF968) SH07_RS11795 PF01848 Hok/gef family SH07_RS11800 PF05016 ParE toxin of type II toxin-antitoxin system, parDE SH07_RS11805 PF04221 RelB antitoxin SH07_RS11810 PF14282 FlxA-like protein SH07_RS11825 PF01381 Helix-turn-helix SH07_RS11830 PF07151 Protein of unknown function (DUF1391) SH07_RS11845 PF05358 DicB protein SH07_RS11850 PF07358 Protein of unknown function (DUF1482) SH07_RS11865 PF00589 Phage integrase family SH07_RS11865 PF12167 Arm DNA-binding domain SH07_RS11870 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS11870 PF00107 Zinc-binding dehydrogenase SH07_RS11875 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH07_RS11875 PF13378 Enolase C-terminal domain-like SH07_RS11880 PF02694 Uncharacterised BCR, YnfA/UPF0060 family SH07_RS11885 PF06932 Protein of unknown function (DUF1283) SH07_RS11890 PF13302 Acetyltransferase (GNAT) domain SH07_RS11895 PF06788 Uncharacterised protein family (UPF0257) SH07_RS11900 PF06649 Protein of unknown function (DUF1161) SH07_RS11905 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS11905 PF00384 Molybdopterin oxidoreductase SH07_RS11905 PF01568 Molydopterin dinucleotide binding domain SH07_RS11910 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS11910 PF01568 Molydopterin dinucleotide binding domain SH07_RS11910 PF00384 Molybdopterin oxidoreductase SH07_RS11915 PF13247 4Fe-4S dicluster domain SH07_RS11915 PF12800 4Fe-4S binding domain SH07_RS11920 PF04976 DMSO reductase anchor subunit (DmsC) SH07_RS11925 PF02613 Nitrate reductase delta subunit SH07_RS11930 PF00654 Voltage gated chloride channel SH07_RS11940 PF00480 ROK family SH07_RS11945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS11945 PF03466 LysR substrate binding domain SH07_RS11950 PF07690 Major Facilitator Superfamily SH07_RS11965 PF00089 Trypsin SH07_RS11970 PF00893 Small Multidrug Resistance protein SH07_RS11975 PF00893 Small Multidrug Resistance protein SH07_RS11980 PF01594 AI-2E family transporter SH07_RS11985 PF02233 NAD(P) transhydrogenase beta subunit SH07_RS11990 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SH07_RS11990 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SH07_RS11990 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch SH07_RS11995 PF07338 Protein of unknown function (DUF1471) SH07_RS12000 PF13520 Amino acid permease SH07_RS12010 PF06942 GlpM protein SH07_RS12015 PF00486 Transcriptional regulatory protein, C terminal SH07_RS12015 PF00072 Response regulator receiver domain SH07_RS12020 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS12020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS12020 PF00672 HAMP domain SH07_RS12025 PF05472 DNA replication terminus site-binding protein (Ter protein) SH07_RS12030 PF00206 Lyase SH07_RS12030 PF10415 Fumarase C C-terminus SH07_RS12035 PF05683 Fumarase C-terminus SH07_RS12035 PF05681 Fumarate hydratase (Fumerase) SH07_RS12040 PF01238 Phosphomannose isomerase type I SH07_RS12045 PF06097 Bacterial protein of unknown function (DUF945) SH07_RS12050 PF03573 outer membrane porin, OprD family SH07_RS12060 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH07_RS12060 PF00703 Glycosyl hydrolases family 2 SH07_RS12060 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH07_RS12065 PF00440 Bacterial regulatory proteins, tetR family SH07_RS12075 PF00356 Bacterial regulatory proteins, lacI family SH07_RS12075 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH07_RS12080 PF02378 Phosphotransferase system, EIIC SH07_RS12080 PF00367 phosphotransferase system, EIIB SH07_RS12085 PF00155 Aminotransferase class I and II SH07_RS12090 PF00962 Adenosine/AMP deaminase SH07_RS12095 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH07_RS12095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH07_RS12105 PF05321 Haemolysin expression modulating protein SH07_RS12110 PF10754 Protein of unknown function (DUF2569) SH07_RS12115 PF02508 Rnf-Nqr subunit, membrane protein SH07_RS12120 PF04060 Putative Fe-S cluster SH07_RS12125 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SH07_RS12125 PF12838 4Fe-4S dicluster domain SH07_RS12125 PF13375 RnfC Barrel sandwich hybrid domain SH07_RS12125 PF10531 SLBB domain SH07_RS12130 PF03116 NQR2, RnfD, RnfE family SH07_RS12135 PF04205 FMN-binding domain SH07_RS12140 PF02508 Rnf-Nqr subunit, membrane protein SH07_RS12145 PF00633 Helix-hairpin-helix motif SH07_RS12145 PF10576 Iron-sulfur binding domain of endonuclease III SH07_RS12145 PF00730 HhH-GPD superfamily base excision DNA repair protein SH07_RS12155 PF00854 POT family SH07_RS12160 PF02798 Glutathione S-transferase, N-terminal domain SH07_RS12160 PF00043 Glutathione S-transferase, C-terminal domain SH07_RS12165 PF08543 Phosphomethylpyrimidine kinase SH07_RS12170 PF01479 S4 domain SH07_RS12170 PF00579 tRNA synthetases class I (W and Y) SH07_RS12175 PF01243 Pyridoxamine 5'-phosphate oxidase SH07_RS12175 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region SH07_RS12180 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme SH07_RS12185 PF03702 Anhydro-N-acetylmuramic acid kinase SH07_RS12190 PF05433 Glycine zipper 2TM domain SH07_RS12195 PF01047 MarR family SH07_RS12200 PF07869 Protein of unknown function (DUF1656) SH07_RS12205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH07_RS12205 PF00529 HlyD membrane-fusion protein of T1SS SH07_RS12210 PF04632 Fusaric acid resistance protein family SH07_RS12215 PF00080 Copper/zinc superoxide dismutase (SODC) SH07_RS12220 PF00248 Aldo/keto reductase family SH07_RS12225 PF06945 Protein of unknown function (DUF1289) SH07_RS12230 PF16925 Tetracyclin repressor-like, C-terminal domain SH07_RS12230 PF00440 Bacterial regulatory proteins, tetR family SH07_RS12235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SH07_RS12240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH07_RS12245 PF00929 Exonuclease SH07_RS12250 PF00270 DEAD/DEAH box helicase SH07_RS12250 PF00271 Helicase conserved C-terminal domain SH07_RS12250 PF08494 DEAD/H associated SH07_RS12255 PF00462 Glutaredoxin SH07_RS12260 PF00877 NlpC/P60 family SH07_RS12265 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SH07_RS12265 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SH07_RS12270 PF07690 Major Facilitator Superfamily SH07_RS12280 PF00356 Bacterial regulatory proteins, lacI family SH07_RS12285 PF03466 LysR substrate binding domain SH07_RS12285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS12290 PF07690 Major Facilitator Superfamily SH07_RS12300 PF00677 Lumazine binding domain SH07_RS12305 PF01554 MatE SH07_RS12310 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH07_RS12310 PF03212 Pertactin SH07_RS12325 PF08803 Putative mono-oxygenase ydhR SH07_RS12330 PF13454 FAD-NAD(P)-binding SH07_RS12340 PF01292 Prokaryotic cytochrome b561 SH07_RS12345 PF13247 4Fe-4S dicluster domain SH07_RS12355 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 SH07_RS12355 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain SH07_RS12360 PF13247 4Fe-4S dicluster domain SH07_RS12360 PF12800 4Fe-4S binding domain SH07_RS12365 PF10965 Protein of unknown function (DUF2767) SH07_RS12370 PF00224 Pyruvate kinase, barrel domain SH07_RS12370 PF02887 Pyruvate kinase, alpha/beta domain SH07_RS12375 PF04728 Lipoprotein leucine-zipper SH07_RS12380 PF01476 LysM domain SH07_RS12380 PF03734 L,D-transpeptidase catalytic domain SH07_RS12380 PF17969 L,D-transpeptidase C-terminal domain SH07_RS12385 PF02657 Fe-S metabolism associated domain SH07_RS12390 PF00266 Aminotransferase class-V SH07_RS12395 PF01458 Uncharacterized protein family (UPF0051) SH07_RS12400 PF00005 ABC transporter SH07_RS12405 PF01458 Uncharacterized protein family (UPF0051) SH07_RS12410 PF01521 Iron-sulphur cluster biosynthesis SH07_RS12415 PF15930 Domain of unknown function SH07_RS12420 PF03061 Thioesterase superfamily SH07_RS12425 PF02913 FAD linked oxidases, C-terminal domain SH07_RS12425 PF13183 4Fe-4S dicluster domain SH07_RS12425 PF01565 FAD binding domain SH07_RS12430 PF01594 AI-2E family transporter SH07_RS12435 PF08965 Domain of unknown function (DUF1870) SH07_RS12440 PF07690 Major Facilitator Superfamily SH07_RS12445 PF07690 Major Facilitator Superfamily SH07_RS12450 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SH07_RS12450 PF08501 Shikimate dehydrogenase substrate binding domain SH07_RS12455 PF01487 Type I 3-dehydroquinase SH07_RS12460 PF01144 Coenzyme A transferase SH07_RS12465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH07_RS12465 PF02770 Acyl-CoA dehydrogenase, middle domain SH07_RS12465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH07_RS12470 PF02311 AraC-like ligand binding domain SH07_RS12470 PF12833 Helix-turn-helix domain SH07_RS12480 PF01012 Electron transfer flavoprotein domain SH07_RS12485 PF01012 Electron transfer flavoprotein domain SH07_RS12485 PF00766 Electron transfer flavoprotein FAD-binding domain SH07_RS12490 PF01494 FAD binding domain SH07_RS12500 PF13193 AMP-binding enzyme C-terminal domain SH07_RS12500 PF00501 AMP-binding enzyme SH07_RS12505 PF02896 PEP-utilising enzyme, TIM barrel domain SH07_RS12505 PF00391 PEP-utilising enzyme, mobile domain SH07_RS12505 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SH07_RS12515 PF03618 Kinase/pyrophosphorylase SH07_RS12520 PF00793 DAHP synthetase I family SH07_RS12525 PF10636 Hemin uptake protein hemP SH07_RS12530 PF02696 Uncharacterized ACR, YdiU/UPF0061 family SH07_RS12535 PF00563 EAL domain SH07_RS12540 PF00877 NlpC/P60 family SH07_RS12550 PF00255 Glutathione peroxidase SH07_RS12555 PF01032 FecCD transport family SH07_RS12560 PF00216 Bacterial DNA-binding protein SH07_RS12565 PF01588 Putative tRNA binding domain SH07_RS12565 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SH07_RS12565 PF03147 Ferredoxin-fold anticodon binding domain SH07_RS12565 PF03484 tRNA synthetase B5 domain SH07_RS12565 PF03483 B3/4 domain SH07_RS12570 PF01409 tRNA synthetases class II core domain (F) SH07_RS12570 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SH07_RS12580 PF00453 Ribosomal protein L20 SH07_RS12585 PF01632 Ribosomal protein L35 SH07_RS12590 PF05198 Translation initiation factor IF-3, N-terminal domain SH07_RS12590 PF00707 Translation initiation factor IF-3, C-terminal domain SH07_RS12595 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH07_RS12595 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SH07_RS12595 PF02824 TGS domain SH07_RS12595 PF03129 Anticodon binding domain SH07_RS12610 PF04338 Protein of unknown function, DUF481 SH07_RS12615 PF00294 pfkB family carbohydrate kinase SH07_RS12620 PF11080 Endoribonuclease GhoS SH07_RS12625 PF03881 Fructosamine kinase SH07_RS12630 PF14002 YniB-like protein SH07_RS12635 PF13419 Haloacid dehalogenase-like hydrolase SH07_RS12640 PF04307 LexA-binding, inner membrane-associated putative hydrolase SH07_RS12645 PF00375 Sodium:dicarboxylate symporter family SH07_RS12655 PF10729 Cell division activator CedA SH07_RS12660 PF00199 Catalase SH07_RS12660 PF18011 C-terminal domain found in long catalases SH07_RS12660 PF06628 Catalase-related immune-responsive SH07_RS12665 PF04794 YdjC-like protein SH07_RS12670 PF02056 Family 4 glycosyl hydrolase SH07_RS12670 PF11975 Family 4 glycosyl hydrolase C-terminal domain SH07_RS12675 PF07883 Cupin domain SH07_RS12675 PF12833 Helix-turn-helix domain SH07_RS12680 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SH07_RS12685 PF02378 Phosphotransferase system, EIIC SH07_RS12690 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH07_RS12695 PF04355 SmpA / OmlA family SH07_RS12700 PF02540 NAD synthase SH07_RS12715 PF05962 HutD SH07_RS12720 PF07813 LTXXQ motif family protein SH07_RS12725 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family SH07_RS12730 PF04996 Succinylarginine dihydrolase SH07_RS12735 PF00171 Aldehyde dehydrogenase family SH07_RS12740 PF04958 Arginine N-succinyltransferase beta subunit SH07_RS12745 PF00202 Aminotransferase class-III SH07_RS12750 PF03372 Endonuclease/Exonuclease/phosphatase family SH07_RS12755 PF09335 SNARE associated Golgi protein SH07_RS12765 PF09335 SNARE associated Golgi protein SH07_RS12770 PF02627 Carboxymuconolactone decarboxylase family SH07_RS12775 PF13416 Bacterial extracellular solute-binding protein SH07_RS12780 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS12785 PF00005 ABC transporter SH07_RS12790 PF00581 Rhodanese-like domain SH07_RS12795 PF01066 CDP-alcohol phosphatidyltransferase SH07_RS12800 PF00293 NUDIX domain SH07_RS12805 PF07383 Protein of unknown function (DUF1496) SH07_RS12810 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SH07_RS12810 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SH07_RS12815 PF06889 Protein of unknown function (DUF1266) SH07_RS12820 PF01751 Toprim domain SH07_RS12820 PF01131 DNA topoisomerase SH07_RS12825 PF02769 AIR synthase related protein, C-terminal domain SH07_RS12825 PF00586 AIR synthase related protein, N-terminal domain SH07_RS12835 PF00881 Nitroreductase family SH07_RS12845 PF01343 Peptidase family S49 SH07_RS12850 PF00710 Asparaginase, N-terminal SH07_RS12850 PF17763 Glutaminase/Asparaginase C-terminal domain SH07_RS12855 PF00857 Isochorismatase family SH07_RS12860 PF00083 Sugar (and other) transporter SH07_RS12865 PF08220 DeoR-like helix-turn-helix domain SH07_RS12865 PF00455 DeoR C terminal sensor domain SH07_RS12870 PF00248 Aldo/keto reductase family SH07_RS12875 PF00294 pfkB family carbohydrate kinase SH07_RS12880 PF01116 Fructose-bisphosphate aldolase class-II SH07_RS12885 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS12885 PF00107 Zinc-binding dehydrogenase SH07_RS12890 PF00083 Sugar (and other) transporter SH07_RS12895 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS12895 PF00107 Zinc-binding dehydrogenase SH07_RS12900 PF07023 Protein of unknown function (DUF1315) SH07_RS12905 PF01641 SelR domain SH07_RS12910 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH07_RS12910 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH07_RS12915 PF01263 Aldose 1-epimerase SH07_RS12920 PF00248 Aldo/keto reductase family SH07_RS12925 PF06629 MltA-interacting protein MipA SH07_RS12930 PF08298 PrkA AAA domain SH07_RS12930 PF06798 PrkA serine protein kinase C-terminal domain SH07_RS12935 PF04285 Protein of unknown function (DUF444) SH07_RS12940 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS12940 PF17158 Membrane-associated sensor, integral membrane domain SH07_RS12945 PF17155 Gammaproteobacterial periplasmic sensor domain SH07_RS12945 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS12950 PF04073 Aminoacyl-tRNA editing domain SH07_RS12960 PF04284 Protein of unknown function (DUF441) SH07_RS12965 PF02311 AraC-like ligand binding domain SH07_RS12965 PF12833 Helix-turn-helix domain SH07_RS12970 PF07690 Major Facilitator Superfamily SH07_RS12975 PF04343 Protein of unknown function, DUF488 SH07_RS12980 PF03891 Domain of unknown function (DUF333) SH07_RS12985 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS12985 PF13185 GAF domain SH07_RS12995 PF04226 Transglycosylase associated protein SH07_RS13000 PF08956 Domain of unknown function (DUF1869) SH07_RS13005 PF09313 Domain of unknown function (DUF1971) SH07_RS13010 PF01810 LysE type translocator SH07_RS13015 PF03466 LysR substrate binding domain SH07_RS13015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS13020 PF00180 Isocitrate/isopropylmalate dehydrogenase SH07_RS13025 PF02028 BCCT, betaine/carnitine/choline family transporter SH07_RS13030 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SH07_RS13030 PF00355 Rieske [2Fe-2S] domain SH07_RS13035 PF00175 Oxidoreductase NAD-binding domain SH07_RS13035 PF00970 Oxidoreductase FAD-binding domain SH07_RS13035 PF00111 2Fe-2S iron-sulfur cluster binding domain SH07_RS13040 PF00570 HRDC domain SH07_RS13040 PF01612 3'-5' exonuclease SH07_RS13045 PF13193 AMP-binding enzyme C-terminal domain SH07_RS13045 PF00501 AMP-binding enzyme SH07_RS13050 PF03843 Outer membrane lipoprotein Slp family SH07_RS13055 PF00814 Glycoprotease family SH07_RS13060 PF13307 Helicase C-terminal domain SH07_RS13060 PF04851 Type III restriction enzyme, res subunit SH07_RS13065 PF01042 Endoribonuclease L-PSP SH07_RS13070 PF08986 Domain of unknown function (DUF1889) SH07_RS13075 PF03701 Uncharacterised protein family (UPF0181) SH07_RS13080 PF04715 Anthranilate synthase component I, N terminal region SH07_RS13080 PF00425 chorismate binding enzyme SH07_RS13085 PF00293 NUDIX domain SH07_RS13090 PF03315 Serine dehydratase beta chain SH07_RS13090 PF03313 Serine dehydratase alpha chain SH07_RS13095 PF00563 EAL domain SH07_RS13095 PF12792 CSS motif domain associated with EAL SH07_RS13100 PF03741 Integral membrane protein TerC family SH07_RS13100 PF03471 Transporter associated domain SH07_RS13110 PF03610 PTS system fructose IIA component SH07_RS13110 PF03830 PTS system sorbose subfamily IIB component SH07_RS13115 PF03609 PTS system sorbose-specific iic component SH07_RS13120 PF03613 PTS system mannose/fructose/sorbose family IID component SH07_RS13125 PF06173 Protein of unknown function (DUF986) SH07_RS13135 PF02659 Putative manganese efflux pump SH07_RS13140 PF13847 Methyltransferase domain SH07_RS13145 PF00313 'Cold-shock' DNA-binding domain SH07_RS13150 PF10736 Protein of unknown function (DUF2627) SH07_RS13160 PF13974 YebO-like protein SH07_RS13165 PF13998 MgrB protein SH07_RS13170 PF13996 YobH-like protein SH07_RS13175 PF01614 Bacterial transcriptional regulator SH07_RS13175 PF09339 IclR helix-turn-helix domain SH07_RS13180 PF07690 Major Facilitator Superfamily SH07_RS13190 PF00595 PDZ domain SH07_RS13190 PF17804 Tail specific protease N-terminal domain SH07_RS13190 PF03572 Peptidase family S41 SH07_RS13190 PF11818 C-terminal domain of tail specific protease (DUF3340) SH07_RS13195 PF17516 ProQ C-terminal domain SH07_RS13195 PF04352 ProQ/FINO family SH07_RS13200 PF13185 GAF domain SH07_RS13205 PF04403 Paraquat-inducible protein A SH07_RS13210 PF02470 MlaD protein SH07_RS13220 PF07351 Protein of unknown function (DUF1480) SH07_RS13225 PF07358 Protein of unknown function (DUF1482) SH07_RS13230 PF00149 Calcineurin-like phosphoesterase SH07_RS13240 PF10709 Protein of unknown function (DUF2511) SH07_RS13245 PF05425 Copper resistance protein D SH07_RS13250 PF04234 CopC domain SH07_RS13255 PF06440 DNA polymerase III, theta subunit SH07_RS13260 PF00795 Carbon-nitrogen hydrolase SH07_RS13265 PF00929 Exonuclease SH07_RS13270 PF00326 Prolyl oligopeptidase family SH07_RS13270 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain SH07_RS13275 PF04391 Protein of unknown function (DUF533) SH07_RS13285 PF13995 YebF-like protein SH07_RS13290 PF07130 YebG protein SH07_RS13295 PF02222 ATP-grasp domain SH07_RS13300 PF01081 KDPG and KHG aldolase SH07_RS13305 PF00920 Dehydratase family SH07_RS13310 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SH07_RS13310 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SH07_RS13320 PF01380 SIS domain SH07_RS13320 PF01418 Helix-turn-helix domain, rpiR family SH07_RS13325 PF02887 Pyruvate kinase, alpha/beta domain SH07_RS13325 PF00224 Pyruvate kinase, barrel domain SH07_RS13330 PF03279 Bacterial lipid A biosynthesis acyltransferase SH07_RS13335 PF01476 LysM domain SH07_RS13335 PF08525 Opacity-associated protein A N-terminal motif SH07_RS13335 PF01551 Peptidase family M23 SH07_RS13340 PF01297 Zinc-uptake complex component A periplasmic SH07_RS13345 PF00005 ABC transporter SH07_RS13350 PF00950 ABC 3 transport family SH07_RS13355 PF05491 RuvB C-terminal winged helix domain SH07_RS13355 PF05496 Holliday junction DNA helicase RuvB P-loop domain SH07_RS13355 PF17864 RuvB AAA lid domain SH07_RS13360 PF01330 RuvA N terminal domain SH07_RS13360 PF07499 RuvA, C-terminal domain SH07_RS13365 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH07_RS13370 PF02075 Crossover junction endodeoxyribonuclease RuvC SH07_RS13375 PF01709 Transcriptional regulator SH07_RS13380 PF00293 NUDIX domain SH07_RS13385 PF01336 OB-fold nucleic acid binding domain SH07_RS13385 PF00152 tRNA synthetases class II (D, K and N) SH07_RS13385 PF02938 GAD domain SH07_RS13390 PF00857 Isochorismatase family SH07_RS13395 PF01904 Protein of unknown function DUF72 SH07_RS13400 PF01124 MAPEG family SH07_RS13405 PF13649 Methyltransferase domain SH07_RS13410 PF08003 Protein of unknown function (DUF1698) SH07_RS13415 PF01568 Molydopterin dinucleotide binding domain SH07_RS13415 PF18364 Molybdopterin oxidoreductase N-terminal domain SH07_RS13415 PF00384 Molybdopterin oxidoreductase SH07_RS13420 PF03264 NapC/NirT cytochrome c family, N-terminal region SH07_RS13425 PF03932 CutC family SH07_RS13430 PF06185 YecM protein SH07_RS13435 PF00750 tRNA synthetases class I (R) SH07_RS13435 PF05746 DALR anticodon binding domain SH07_RS13435 PF03485 Arginyl tRNA synthetase N terminal domain SH07_RS13440 PF07007 Lysozyme inhibitor LprI SH07_RS13445 PF06366 Flagellar protein FlhE SH07_RS13450 PF00771 FHIPEP family SH07_RS13455 PF01312 FlhB HrpN YscU SpaS Family SH07_RS13460 PF04344 Chemotaxis phosphatase, CheZ SH07_RS13465 PF00072 Response regulator receiver domain SH07_RS13470 PF00072 Response regulator receiver domain SH07_RS13470 PF01339 CheB methylesterase SH07_RS13475 PF01739 CheR methyltransferase, SAM binding domain SH07_RS13475 PF03705 CheR methyltransferase, all-alpha domain SH07_RS13480 PF00672 HAMP domain SH07_RS13480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH07_RS13480 PF02203 Tar ligand binding domain homologue SH07_RS13485 PF00672 HAMP domain SH07_RS13485 PF02203 Tar ligand binding domain homologue SH07_RS13485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH07_RS13490 PF01584 CheW-like domain SH07_RS13495 PF01584 CheW-like domain SH07_RS13495 PF09078 CheY binding SH07_RS13495 PF02895 Signal transducing histidine kinase, homodimeric domain SH07_RS13495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS13495 PF01627 Hpt domain SH07_RS13500 PF13677 Membrane MotB of proton-channel complex MotA/MotB SH07_RS13500 PF00691 OmpA family SH07_RS13505 PF01618 MotA/TolQ/ExbB proton channel family SH07_RS13510 PF05280 Flagellar transcriptional activator (FlhC) SH07_RS13515 PF05247 Flagellar transcriptional activator (FlhD) SH07_RS13520 PF00582 Universal stress protein family SH07_RS13525 PF00982 Glycosyltransferase family 20 SH07_RS13530 PF02358 Trehalose-phosphatase SH07_RS13535 PF02653 Branched-chain amino acid transport system / permease component SH07_RS13540 PF00005 ABC transporter SH07_RS13545 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH07_RS13550 PF00210 Ferritin-like domain SH07_RS13555 PF10964 Protein of unknown function (DUF2766) SH07_RS13565 PF13992 YecR-like lipoprotein SH07_RS13570 PF00210 Ferritin-like domain SH07_RS13575 PF10678 Protein of unknown function (DUF2492) SH07_RS13580 PF03222 Tryptophan/tyrosine permease family SH07_RS13585 PF02810 SEC-C motif SH07_RS13585 PF03695 Uncharacterised protein family (UPF0149) SH07_RS13605 PF01066 CDP-alcohol phosphatidyltransferase SH07_RS13610 PF01541 GIY-YIG catalytic domain SH07_RS13610 PF02151 UvrB/uvrC motif SH07_RS13610 PF08459 UvrC Helix-hairpin-helix N-terminal SH07_RS13615 PF00196 Bacterial regulatory proteins, luxR family SH07_RS13615 PF00072 Response regulator receiver domain SH07_RS13625 PF10769 Protein of unknown function (DUF2594) SH07_RS13630 PF03472 Autoinducer binding domain SH07_RS13630 PF00196 Bacterial regulatory proteins, luxR family SH07_RS13635 PF00005 ABC transporter SH07_RS13640 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS13645 PF00291 Pyridoxal-phosphate dependent enzyme SH07_RS13650 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH07_RS13655 PF02899 Phage integrase, N-terminal SAM-like domain SH07_RS13660 PF04542 Sigma-70 region 2 SH07_RS13660 PF04539 Sigma-70 region 3 SH07_RS13660 PF04545 Sigma-70, region 4 SH07_RS13665 PF00669 Bacterial flagellin N-terminal helical region SH07_RS13665 PF08884 Flagellin D3 domain SH07_RS13665 PF00700 Bacterial flagellin C-terminal helical region SH07_RS13670 PF07195 Flagellar hook-associated protein 2 C-terminus SH07_RS13670 PF02465 Flagellar hook-associated protein 2 N-terminus SH07_RS13675 PF02561 Flagellar protein FliS SH07_RS13680 PF05400 Flagellar protein FliT SH07_RS13685 PF02806 Alpha amylase, C-terminal all-beta domain SH07_RS13685 PF00128 Alpha amylase, catalytic domain SH07_RS13690 PF13987 YedD-like protein SH07_RS13695 PF04143 Sulphur transport SH07_RS13700 PF01206 Sulfurtransferase TusA SH07_RS13705 PF02586 SOS response associated peptidase (SRAP) SH07_RS13710 PF00583 Acetyltransferase (GNAT) family SH07_RS13730 PF02049 Flagellar hook-basal body complex protein FliE SH07_RS13735 PF01514 Secretory protein of YscJ/FliF family SH07_RS13735 PF08345 Flagellar M-ring protein C-terminal SH07_RS13740 PF14841 FliG middle domain SH07_RS13740 PF01706 FliG C-terminal domain SH07_RS13740 PF14842 FliG N-terminal domain SH07_RS13745 PF02108 Flagellar assembly protein FliH SH07_RS13750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH07_RS13750 PF18269 T3SS EscN ATPase C-terminal domain SH07_RS13755 PF02050 Flagellar FliJ protein SH07_RS13765 PF03748 Flagellar basal body-associated protein FliL SH07_RS13770 PF02154 Flagellar motor switch protein FliM SH07_RS13770 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SH07_RS13775 PF16973 Flagellar motor switch protein FliN N-terminal SH07_RS13775 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SH07_RS13780 PF04347 Flagellar biosynthesis protein, FliO SH07_RS13785 PF00813 FliP family SH07_RS13790 PF01313 Bacterial export proteins, family 3 SH07_RS13795 PF01311 Bacterial export proteins, family 1 SH07_RS13800 PF00196 Bacterial regulatory proteins, luxR family SH07_RS13805 PF10781 Dextransucrase DSRB SH07_RS13810 PF10733 Protein of unknown function (DUF2525) SH07_RS13820 PF17151 Periplasmic sensor domain SH07_RS13820 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS13825 PF09926 Uncharacterized small protein (DUF2158) SH07_RS13830 PF05661 Protein of unknown function (DUF808) SH07_RS13835 PF00892 EamA-like transporter family SH07_RS13840 PF03852 DNA mismatch endonuclease Vsr SH07_RS13845 PF18284 DNA methylase N-terminal domain SH07_RS13845 PF00145 C-5 cytosine-specific DNA methylase SH07_RS13850 PF01966 HD domain SH07_RS13880 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS13880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS13885 PF00072 Response regulator receiver domain SH07_RS13885 PF00486 Transcriptional regulatory protein, C terminal SH07_RS13890 PF00576 HIUase/Transthyretin family SH07_RS13895 PF00174 Oxidoreductase molybdopterin binding domain SH07_RS13900 PF01794 Ferric reductase like transmembrane component SH07_RS13905 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SH07_RS13910 PF01292 Prokaryotic cytochrome b561 SH07_RS13925 PF06167 Glucose-regulated metallo-peptidase M90 SH07_RS13935 PF09134 Invasin, domain 3 SH07_RS13935 PF02369 Bacterial Ig-like domain (group 1) SH07_RS13935 PF11924 Inverse autotransporter, beta-domain SH07_RS13945 PF00083 Sugar (and other) transporter SH07_RS13945 PF07690 Major Facilitator Superfamily SH07_RS13950 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus SH07_RS13950 PF01048 Phosphorylase superfamily SH07_RS13955 PF01709 Transcriptional regulator SH07_RS13965 PF01554 MatE SH07_RS13975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS13975 PF03466 LysR substrate binding domain SH07_RS13980 PF03466 LysR substrate binding domain SH07_RS13980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS13990 PF03734 L,D-transpeptidase catalytic domain SH07_RS13990 PF17969 L,D-transpeptidase C-terminal domain SH07_RS13995 PF02277 Phosphoribosyltransferase SH07_RS14000 PF02654 Cobalamin-5-phosphate synthase SH07_RS14005 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase SH07_RS14015 PF05598 Transposase domain (DUF772) SH07_RS14015 PF01609 Transposase DDE domain SH07_RS14025 PF00665 Integrase core domain SH07_RS14025 PF13276 HTH-like domain SH07_RS14030 PF01527 Transposase SH07_RS14035 PF07715 TonB-dependent Receptor Plug Domain SH07_RS14035 PF00593 TonB dependent receptor SH07_RS14045 PF13018 Extended Signal Peptide of Type V secretion system SH07_RS14045 PF03797 Autotransporter beta-domain SH07_RS14045 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH07_RS14055 PF04002 RadC-like JAB domain SH07_RS14060 PF06174 Protein of unknown function (DUF987) SH07_RS14065 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH07_RS14070 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH07_RS14085 PF10662 Ethanolamine utilisation - propanediol utilisation SH07_RS14090 PF04363 Protein of unknown function (DUF496) SH07_RS14095 PF04632 Fusaric acid resistance protein family SH07_RS14100 PF06445 GyrI-like small molecule binding domain SH07_RS14105 PF07943 Penicillin-binding protein 5, C-terminal domain SH07_RS14105 PF00768 D-alanyl-D-alanine carboxypeptidase SH07_RS14110 PF08411 Exonuclease C-terminal SH07_RS14110 PF00929 Exonuclease SH07_RS14115 PF01206 Sulfurtransferase TusA SH07_RS14120 PF04143 Sulphur transport SH07_RS14125 PF13520 Amino acid permease SH07_RS14130 PF03466 LysR substrate binding domain SH07_RS14130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS14135 PF01370 NAD dependent epimerase/dehydratase family SH07_RS14140 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SH07_RS14145 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system SH07_RS14150 PF01634 ATP phosphoribosyltransferase SH07_RS14150 PF08029 HisG, C-terminal domain SH07_RS14155 PF00815 Histidinol dehydrogenase SH07_RS14160 PF00155 Aminotransferase class I and II SH07_RS14165 PF08645 Polynucleotide kinase 3 phosphatase SH07_RS14165 PF00475 Imidazoleglycerol-phosphate dehydratase SH07_RS14170 PF00117 Glutamine amidotransferase class-I SH07_RS14175 PF00977 Histidine biosynthesis protein SH07_RS14180 PF00977 Histidine biosynthesis protein SH07_RS14185 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SH07_RS14185 PF01502 Phosphoribosyl-AMP cyclohydrolase SH07_RS14190 PF02706 Chain length determinant protein SH07_RS14195 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SH07_RS14195 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SH07_RS14195 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SH07_RS14200 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH07_RS14200 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SH07_RS14205 PF05598 Transposase domain (DUF772) SH07_RS14205 PF01609 Transposase DDE domain SH07_RS14215 PF00534 Glycosyl transferases group 1 SH07_RS14220 PF00132 Bacterial transferase hexapeptide (six repeats) SH07_RS14235 PF03275 UDP-galactopyranose mutase SH07_RS14240 PF01943 Polysaccharide biosynthesis protein SH07_RS14245 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SH07_RS14250 PF00483 Nucleotidyl transferase SH07_RS14260 PF16363 GDP-mannose 4,6 dehydratase SH07_RS14265 PF00483 Nucleotidyl transferase SH07_RS14275 PF13439 Glycosyltransferase Family 4 SH07_RS14275 PF00534 Glycosyl transferases group 1 SH07_RS14280 PF04230 Polysaccharide pyruvyl transferase SH07_RS14290 PF02397 Bacterial sugar transferase SH07_RS14295 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH07_RS14295 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH07_RS14295 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH07_RS14295 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH07_RS14300 PF00483 Nucleotidyl transferase SH07_RS14300 PF01050 Mannose-6-phosphate isomerase SH07_RS14305 PF00534 Glycosyl transferases group 1 SH07_RS14305 PF13579 Glycosyl transferase 4-like domain SH07_RS14310 PF00293 NUDIX domain SH07_RS14315 PF01370 NAD dependent epimerase/dehydratase family SH07_RS14320 PF16363 GDP-mannose 4,6 dehydratase SH07_RS14325 PF00132 Bacterial transferase hexapeptide (six repeats) SH07_RS14330 PF00535 Glycosyl transferase family 2 SH07_RS14340 PF00534 Glycosyl transferases group 1 SH07_RS14340 PF13439 Glycosyltransferase Family 4 SH07_RS14345 PF00132 Bacterial transferase hexapeptide (six repeats) SH07_RS14350 PF00535 Glycosyl transferase family 2 SH07_RS14355 PF13614 AAA domain SH07_RS14355 PF13807 G-rich domain on putative tyrosine kinase SH07_RS14355 PF02706 Chain length determinant protein SH07_RS14360 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH07_RS14365 PF18412 Outer-membrane lipoprotein Wza C-terminal domain SH07_RS14365 PF10531 SLBB domain SH07_RS14365 PF02563 Polysaccharide biosynthesis/export protein SH07_RS14370 PF03471 Transporter associated domain SH07_RS14370 PF03741 Integral membrane protein TerC family SH07_RS14370 PF00571 CBS domain SH07_RS14375 PF05170 AsmA family SH07_RS14380 PF00692 dUTPase SH07_RS14385 PF00485 Phosphoribulokinase / Uridine kinase family SH07_RS14390 PF00563 EAL domain SH07_RS14390 PF13426 PAS domain SH07_RS14390 PF08447 PAS fold SH07_RS14390 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS14390 PF08448 PAS fold SH07_RS14390 PF05231 MASE1 SH07_RS14395 PF00730 HhH-GPD superfamily base excision DNA repair protein SH07_RS14395 PF06029 AlkA N-terminal domain SH07_RS14405 PF00012 Hsp70 protein SH07_RS14415 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) SH07_RS14425 PF00092 von Willebrand factor type A domain SH07_RS14430 PF13533 Biotin-lipoyl like SH07_RS14435 PF00873 AcrB/AcrD/AcrF family SH07_RS14440 PF00873 AcrB/AcrD/AcrF family SH07_RS14445 PF07690 Major Facilitator Superfamily SH07_RS14450 PF00672 HAMP domain SH07_RS14450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS14450 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS14455 PF00486 Transcriptional regulatory protein, C terminal SH07_RS14455 PF00072 Response regulator receiver domain SH07_RS14460 PF07411 Domain of unknown function (DUF1508) SH07_RS14465 PF16325 Peptidase family U32 C-terminal domain SH07_RS14465 PF01136 Peptidase family U32 SH07_RS14485 PF00781 Diacylglycerol kinase catalytic domain SH07_RS14495 PF01527 Transposase SH07_RS14500 PF13333 Integrase core domain SH07_RS14500 PF00665 Integrase core domain SH07_RS14500 PF13276 HTH-like domain SH07_RS14505 PF08220 DeoR-like helix-turn-helix domain SH07_RS14510 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS14510 PF00107 Zinc-binding dehydrogenase SH07_RS14515 PF03611 PTS system sugar-specific permease component SH07_RS14520 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH07_RS14525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH07_RS14530 PF08013 Tagatose 6 phosphate kinase SH07_RS14535 PF01116 Fructose-bisphosphate aldolase class-II SH07_RS14540 PF01791 DeoC/LacD family aldolase SH07_RS14545 PF03825 Nucleoside H+ symporter SH07_RS14550 PF03747 ADP-ribosylglycohydrolase SH07_RS14555 PF00294 pfkB family carbohydrate kinase SH07_RS14560 PF00392 Bacterial regulatory proteins, gntR family SH07_RS14560 PF07702 UTRA domain SH07_RS14565 PF01183 Glycosyl hydrolases family 25 SH07_RS14570 PF08543 Phosphomethylpyrimidine kinase SH07_RS14575 PF02110 Hydroxyethylthiazole kinase family SH07_RS14580 PF02583 Metal-sensitive transcriptional repressor SH07_RS14585 PF03824 High-affinity nickel-transport protein SH07_RS14590 PF11776 Nickel/cobalt transporter regulator SH07_RS14595 PF00419 Fimbrial protein SH07_RS14600 PF00577 Outer membrane usher protein SH07_RS14600 PF13954 PapC N-terminal domain SH07_RS14600 PF13953 PapC C-terminal domain SH07_RS14605 PF02753 Pili assembly chaperone PapD, C-terminal domain SH07_RS14605 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH07_RS14610 PF00419 Fimbrial protein SH07_RS14620 PF10836 Protein of unknown function (DUF2574) SH07_RS14625 PF10609 NUBPL iron-transfer P-loop NTPase SH07_RS14630 PF09334 tRNA synthetases class I (M) SH07_RS14630 PF01588 Putative tRNA binding domain SH07_RS14635 PF05406 WGR domain SH07_RS14645 PF13569 Domain of unknown function (DUF4132) SH07_RS14655 PF07728 AAA domain (dynein-related subfamily) SH07_RS14665 PF05762 VWA domain containing CoxE-like protein SH07_RS14670 PF04434 SWIM zinc finger SH07_RS14675 PF06998 Protein of unknown function (DUF1307) SH07_RS14680 PF07308 Protein of unknown function (DUF1456) SH07_RS14685 PF00072 Response regulator receiver domain SH07_RS14685 PF04397 LytTr DNA-binding domain SH07_RS14690 PF07694 5TMR of 5TMR-LYT SH07_RS14690 PF06580 Histidine kinase SH07_RS14695 PF13411 MerR HTH family regulatory protein SH07_RS14705 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS14710 PF00005 ABC transporter SH07_RS14715 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS14720 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH07_RS14725 PF01915 Glycosyl hydrolase family 3 C-terminal domain SH07_RS14725 PF00933 Glycosyl hydrolase family 3 N terminal domain SH07_RS14725 PF14310 Fibronectin type III-like domain SH07_RS14730 PF09330 D-lactate dehydrogenase, membrane binding SH07_RS14730 PF01565 FAD binding domain SH07_RS14735 PF00768 D-alanyl-D-alanine carboxypeptidase SH07_RS14740 PF04893 Yip1 domain SH07_RS14745 PF09335 SNARE associated Golgi protein SH07_RS14765 PF01207 Dihydrouridine synthase (Dus) SH07_RS14770 PF03788 LrgA family SH07_RS14775 PF04172 LrgB-like family SH07_RS14780 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SH07_RS14780 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region SH07_RS14785 PF02698 DUF218 domain SH07_RS14790 PF10808 Protein of unknown function (DUF2542) SH07_RS14795 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH07_RS14795 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH07_RS14800 PF01180 Dihydroorotate dehydrogenase SH07_RS14805 PF02653 Branched-chain amino acid transport system / permease component SH07_RS14810 PF03400 IS1 transposase SH07_RS14820 PF13407 Periplasmic binding protein domain SH07_RS14825 PF00356 Bacterial regulatory proteins, lacI family SH07_RS14835 PF04235 Protein of unknown function (DUF418) SH07_RS14840 PF01227 GTP cyclohydrolase I SH07_RS14850 PF00756 Putative esterase SH07_RS14855 PF00593 TonB dependent receptor SH07_RS14855 PF07715 TonB-dependent Receptor Plug Domain SH07_RS14860 PF00324 Amino acid permease SH07_RS14865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS14865 PF03466 LysR substrate binding domain SH07_RS14870 PF03601 Conserved hypothetical protein 698 SH07_RS14875 PF01261 Xylose isomerase-like TIM barrel SH07_RS14880 PF00294 pfkB family carbohydrate kinase SH07_RS14885 PF01773 Na+ dependent nucleoside transporter N-terminus SH07_RS14885 PF07662 Na+ dependent nucleoside transporter C-terminus SH07_RS14890 PF01156 Inosine-uridine preferring nucleoside hydrolase SH07_RS14895 PF00027 Cyclic nucleotide-binding domain SH07_RS14900 PF07662 Na+ dependent nucleoside transporter C-terminus SH07_RS14900 PF01773 Na+ dependent nucleoside transporter N-terminus SH07_RS14905 PF04227 Indigoidine synthase A like protein SH07_RS14910 PF00294 pfkB family carbohydrate kinase SH07_RS14915 PF02378 Phosphotransferase system, EIIC SH07_RS14915 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH07_RS14920 PF00294 pfkB family carbohydrate kinase SH07_RS14925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH07_RS14925 PF00381 PTS HPr component phosphorylation site SH07_RS14930 PF07690 Major Facilitator Superfamily SH07_RS14935 PF03692 Putative zinc- or iron-chelating domain SH07_RS14940 PF01132 Elongation factor P (EF-P) OB domain SH07_RS14940 PF08207 Elongation factor P (EF-P) KOW-like domain SH07_RS14940 PF09285 Elongation factor P, C-terminal SH07_RS14945 PF01232 Mannitol dehydrogenase Rossmann domain SH07_RS14945 PF08125 Mannitol dehydrogenase C-terminal domain SH07_RS14950 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH07_RS14950 PF07683 Cobalamin synthesis protein cobW C-terminal domain SH07_RS14955 PF01569 PAP2 superfamily SH07_RS14960 PF00877 NlpC/P60 family SH07_RS14965 PF00563 EAL domain SH07_RS14965 PF12792 CSS motif domain associated with EAL SH07_RS14970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH07_RS14975 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS14980 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS14980 PF12911 N-terminal TM domain of oligopeptide transport permease C SH07_RS14985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH07_RS14985 PF00005 ABC transporter SH07_RS14990 PF13989 YejG-like protein SH07_RS14995 PF07690 Major Facilitator Superfamily SH07_RS15000 PF00849 RNA pseudouridylate synthase SH07_RS15000 PF01479 S4 domain SH07_RS15005 PF04851 Type III restriction enzyme, res subunit SH07_RS15005 PF00271 Helicase conserved C-terminal domain SH07_RS15010 PF01386 Ribosomal L25p family SH07_RS15015 PF04245 37-kD nucleoid-associated bacterial protein SH07_RS15020 PF07208 Protein of unknown function (DUF1414) SH07_RS15025 PF00884 Sulfatase SH07_RS15025 PF11893 Domain of unknown function (DUF3413) SH07_RS15035 PF03797 Autotransporter beta-domain SH07_RS15035 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH07_RS15035 PF03212 Pertactin SH07_RS15040 PF05598 Transposase domain (DUF772) SH07_RS15040 PF01609 Transposase DDE domain SH07_RS15050 PF00196 Bacterial regulatory proteins, luxR family SH07_RS15050 PF00072 Response regulator receiver domain SH07_RS15055 PF03918 Cytochrome C biogenesis protein SH07_RS15060 PF08534 Redoxin SH07_RS15065 PF01578 Cytochrome C assembly protein SH07_RS15065 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SH07_RS15070 PF03100 CcmE SH07_RS15075 PF04995 Heme exporter protein D (CcmD) SH07_RS15080 PF01578 Cytochrome C assembly protein SH07_RS15085 PF03379 CcmB protein SH07_RS15090 PF00005 ABC transporter SH07_RS15095 PF03264 NapC/NirT cytochrome c family, N-terminal region SH07_RS15100 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) SH07_RS15105 PF13237 4Fe-4S dicluster domain SH07_RS15105 PF12801 4Fe-4S binding domain SH07_RS15110 PF12800 4Fe-4S binding domain SH07_RS15110 PF12838 4Fe-4S dicluster domain SH07_RS15115 PF00384 Molybdopterin oxidoreductase SH07_RS15115 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS15115 PF01568 Molydopterin dinucleotide binding domain SH07_RS15120 PF03927 NapD protein SH07_RS15125 PF12800 4Fe-4S binding domain SH07_RS15125 PF00037 4Fe-4S binding domain SH07_RS15125 PF13187 4Fe-4S dicluster domain SH07_RS15135 PF03974 Ecotin SH07_RS15140 PF06039 Malate:quinone oxidoreductase (Mqo) SH07_RS15145 PF00005 ABC transporter SH07_RS15150 PF13532 2OG-Fe(II) oxygenase superfamily SH07_RS15155 PF12833 Helix-turn-helix domain SH07_RS15155 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH07_RS15155 PF02805 Metal binding domain of Ada SH07_RS15155 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SH07_RS15160 PF02424 ApbE family SH07_RS15165 PF00267 Gram-negative porin SH07_RS15180 PF16359 RcsD-ABL domain SH07_RS15180 PF01627 Hpt domain SH07_RS15180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS15185 PF00196 Bacterial regulatory proteins, luxR family SH07_RS15185 PF00072 Response regulator receiver domain SH07_RS15190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS15190 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS15190 PF09456 RcsC Alpha-Beta-Loop (ABL) SH07_RS15190 PF00072 Response regulator receiver domain SH07_RS15195 PF00989 PAS fold SH07_RS15195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS15195 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS15200 PF00158 Sigma-54 interaction domain SH07_RS15200 PF02954 Bacterial regulatory protein, Fis family SH07_RS15200 PF00072 Response regulator receiver domain SH07_RS15205 PF01144 Coenzyme A transferase SH07_RS15210 PF01144 Coenzyme A transferase SH07_RS15215 PF02667 Short chain fatty acid transporter SH07_RS15220 PF02803 Thiolase, C-terminal domain SH07_RS15220 PF00108 Thiolase, N-terminal domain SH07_RS15225 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) SH07_RS15230 PF10062 Predicted secreted protein (DUF2300) SH07_RS15230 PF08486 Stage II sporulation protein SH07_RS15235 PF00207 Alpha-2-macroglobulin family SH07_RS15235 PF07703 Alpha-2-macroglobulin bait region domain SH07_RS15235 PF01835 MG2 domain SH07_RS15240 PF01835 MG2 domain SH07_RS15240 PF07703 Alpha-2-macroglobulin bait region domain SH07_RS15240 PF00207 Alpha-2-macroglobulin family SH07_RS15245 PF06672 Protein of unknown function (DUF1175) SH07_RS15250 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) SH07_RS15255 PF03989 DNA gyrase C-terminal domain, beta-propeller SH07_RS15255 PF00521 DNA gyrase/topoisomerase IV, subunit A SH07_RS15265 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat SH07_RS15265 PF12951 Passenger-associated-transport-repeat SH07_RS15265 PF03797 Autotransporter beta-domain SH07_RS15275 PF00317 Ribonucleotide reductase, all-alpha domain SH07_RS15275 PF02867 Ribonucleotide reductase, barrel domain SH07_RS15275 PF03477 ATP cone domain SH07_RS15280 PF00268 Ribonucleotide reductase, small chain SH07_RS15285 PF00111 2Fe-2S iron-sulfur cluster binding domain SH07_RS15300 PF03009 Glycerophosphoryl diester phosphodiesterase family SH07_RS15305 PF07690 Major Facilitator Superfamily SH07_RS15310 PF04324 BFD-like [2Fe-2S] binding domain SH07_RS15310 PF01266 FAD dependent oxidoreductase SH07_RS15315 PF00890 FAD binding domain SH07_RS15320 PF13183 4Fe-4S dicluster domain SH07_RS15320 PF02754 Cysteine-rich domain SH07_RS15325 PF04754 Putative transposase, YhgA-like SH07_RS15335 PF03328 HpcH/HpaI aldolase/citrate lyase family SH07_RS15340 PF07690 Major Facilitator Superfamily SH07_RS15350 PF09339 IclR helix-turn-helix domain SH07_RS15350 PF01614 Bacterial transcriptional regulator SH07_RS15355 PF00994 Probable molybdopterin binding domain SH07_RS15360 PF07437 YfaZ precursor SH07_RS15365 PF00293 NUDIX domain SH07_RS15370 PF00300 Histidine phosphatase superfamily (branch 1) SH07_RS15375 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SH07_RS15380 PF00535 Glycosyl transferase family 2 SH07_RS15385 PF00551 Formyl transferase SH07_RS15385 PF01370 NAD dependent epimerase/dehydratase family SH07_RS15385 PF02911 Formyl transferase, C-terminal domain SH07_RS15390 PF01522 Polysaccharide deacetylase SH07_RS15395 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase SH07_RS15400 PF00892 EamA-like transporter family SH07_RS15415 PF00501 AMP-binding enzyme SH07_RS15415 PF13193 AMP-binding enzyme C-terminal domain SH07_RS15420 PF13378 Enolase C-terminal domain-like SH07_RS15425 PF00378 Enoyl-CoA hydratase/isomerase SH07_RS15430 PF12697 Alpha/beta hydrolase family SH07_RS15435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH07_RS15435 PF16582 Middle domain of thiamine pyrophosphate SH07_RS15435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH07_RS15440 PF00425 chorismate binding enzyme SH07_RS15445 PF05957 Bacterial protein of unknown function (DUF883) SH07_RS15450 PF13673 Acetyltransferase (GNAT) domain SH07_RS15455 PF12706 Beta-lactamase superfamily domain SH07_RS15460 PF02902 Ulp1 protease family, C-terminal catalytic domain SH07_RS15465 PF12450 von Willebrand factor SH07_RS15465 PF12034 Domain of unknown function (DUF3520) SH07_RS15465 PF00092 von Willebrand factor type A domain SH07_RS15470 PF04389 Peptidase family M28 SH07_RS15475 PF08974 Domain of unknown function (DUF1877) SH07_RS15495 PF00361 Proton-conducting membrane transporter SH07_RS15500 PF00361 Proton-conducting membrane transporter SH07_RS15505 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH07_RS15505 PF00361 Proton-conducting membrane transporter SH07_RS15510 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SH07_RS15515 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SH07_RS15520 PF12838 4Fe-4S dicluster domain SH07_RS15525 PF00146 NADH dehydrogenase SH07_RS15530 PF00384 Molybdopterin oxidoreductase SH07_RS15530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS15530 PF01568 Molydopterin dinucleotide binding domain SH07_RS15530 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SH07_RS15535 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SH07_RS15535 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SH07_RS15535 PF10531 SLBB domain SH07_RS15545 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH07_RS15545 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH07_RS15550 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH07_RS15555 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SH07_RS15560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS15560 PF03466 LysR substrate binding domain SH07_RS15565 PF00155 Aminotransferase class I and II SH07_RS15575 PF02080 TrkA-C domain SH07_RS15575 PF03600 Citrate transporter SH07_RS15580 PF13419 Haloacid dehalogenase-like hydrolase SH07_RS15585 PF03887 YfbU domain SH07_RS15590 PF04217 Protein of unknown function, DUF412 SH07_RS15600 PF00871 Acetokinase family SH07_RS15605 PF01515 Phosphate acetyl/butaryl transferase SH07_RS15605 PF07085 DRTGG domain SH07_RS15610 PF03606 C4-dicarboxylate anaerobic carrier SH07_RS15615 PF00293 NUDIX domain SH07_RS15620 PF12850 Calcineurin-like phosphoesterase superfamily domain SH07_RS15625 PF02798 Glutathione S-transferase, N-terminal domain SH07_RS15625 PF14834 Glutathione S-transferase, C-terminal domain SH07_RS15630 PF02798 Glutathione S-transferase, N-terminal domain SH07_RS15630 PF00043 Glutathione S-transferase, C-terminal domain SH07_RS15635 PF02152 Dihydroneopterin aldolase SH07_RS15640 PF08338 Domain of unknown function (DUF1731) SH07_RS15640 PF01370 NAD dependent epimerase/dehydratase family SH07_RS15645 PF04754 Putative transposase, YhgA-like SH07_RS15650 PF00005 ABC transporter SH07_RS15655 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS15660 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS15665 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH07_RS15670 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH07_RS15675 PF02441 Flavoprotein SH07_RS15680 PF00156 Phosphoribosyl transferase domain SH07_RS15685 PF02674 Colicin V production protein SH07_RS15690 PF05036 Sporulation related domain SH07_RS15695 PF02875 Mur ligase family, glutamate ligase domain SH07_RS15695 PF08245 Mur ligase middle domain SH07_RS15700 PF01039 Carboxyl transferase domain SH07_RS15700 PF17848 Acetyl-coA carboxylase zinc finger domain SH07_RS15705 PF09335 SNARE associated Golgi protein SH07_RS15710 PF01416 tRNA pseudouridine synthase SH07_RS15715 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH07_RS15715 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH07_RS15720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH07_RS15720 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH07_RS15720 PF11890 Domain of unknown function (DUF3410) SH07_RS15730 PF07690 Major Facilitator Superfamily SH07_RS15735 PF00109 Beta-ketoacyl synthase, N-terminal domain SH07_RS15735 PF02801 Beta-ketoacyl synthase, C-terminal domain SH07_RS15740 PF05430 S-adenosyl-L-methionine-dependent methyltransferase SH07_RS15740 PF01266 FAD dependent oxidoreductase SH07_RS15745 PF08891 YfcL protein SH07_RS15750 PF04315 Elongation factor P hydroxylase SH07_RS15755 PF01925 Sulfite exporter TauE/SafE SH07_RS15760 PF03411 Penicillin-insensitive murein endopeptidase SH07_RS15765 PF01264 Chorismate synthase SH07_RS15770 PF05175 Methyltransferase small domain SH07_RS15775 PF01713 Smr domain SH07_RS15780 PF11245 Protein of unknown function (DUF2544) SH07_RS15785 PF00419 Fimbrial protein SH07_RS15790 PF00419 Fimbrial protein SH07_RS15795 PF00419 Fimbrial protein SH07_RS15800 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH07_RS15800 PF02753 Pili assembly chaperone PapD, C-terminal domain SH07_RS15810 PF00419 Fimbrial protein SH07_RS15815 PF00300 Histidine phosphatase superfamily (branch 1) SH07_RS15820 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH07_RS15820 PF00378 Enoyl-CoA hydratase/isomerase SH07_RS15820 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH07_RS15825 PF00108 Thiolase, N-terminal domain SH07_RS15825 PF02803 Thiolase, C-terminal domain SH07_RS15830 PF04175 Protein of unknown function (DUF406) SH07_RS15835 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) SH07_RS15845 PF04333 MlaA lipoprotein SH07_RS15850 PF01226 Formate/nitrite transporter SH07_RS15860 PF14659 Phage integrase, N-terminal SAM-like domain SH07_RS15860 PF00589 Phage integrase family SH07_RS15860 PF13356 Arm DNA-binding domain SH07_RS15865 PF04138 GtrA-like protein SH07_RS15870 PF00535 Glycosyl transferase family 2 SH07_RS15880 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH07_RS15885 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH07_RS15895 PF05869 DNA N-6-adenine-methyltransferase (Dam) SH07_RS15900 PF06069 PerC transcriptional activator SH07_RS15920 PF10065 Uncharacterized conserved protein (DUF2303) SH07_RS15945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS15945 PF03466 LysR substrate binding domain SH07_RS15950 PF02447 GntP family permease SH07_RS15955 PF00291 Pyridoxal-phosphate dependent enzyme SH07_RS15960 PF07690 Major Facilitator Superfamily SH07_RS15965 PF00529 HlyD membrane-fusion protein of T1SS SH07_RS15965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH07_RS15970 PF00196 Bacterial regulatory proteins, luxR family SH07_RS15970 PF00072 Response regulator receiver domain SH07_RS15975 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH07_RS15975 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS15975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS15975 PF01627 Hpt domain SH07_RS15975 PF00072 Response regulator receiver domain SH07_RS15980 PF02515 CoA-transferase family III SH07_RS15985 PF03547 Membrane transport protein SH07_RS15990 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH07_RS15990 PF00205 Thiamine pyrophosphate enzyme, central domain SH07_RS15990 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH07_RS15995 PF02515 CoA-transferase family III SH07_RS16000 PF10938 YfdX protein SH07_RS16015 PF10810 Protein of unknown function (DUF2545) SH07_RS16020 PF03279 Bacterial lipid A biosynthesis acyltransferase SH07_RS16025 PF00155 Aminotransferase class I and II SH07_RS16030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS16030 PF07694 5TMR of 5TMR-LYT SH07_RS16030 PF06580 Histidine kinase SH07_RS16035 PF04397 LytTr DNA-binding domain SH07_RS16035 PF00072 Response regulator receiver domain SH07_RS16040 PF12833 Helix-turn-helix domain SH07_RS16045 PF05524 PEP-utilising enzyme, N-terminal SH07_RS16045 PF00391 PEP-utilising enzyme, mobile domain SH07_RS16045 PF02896 PEP-utilising enzyme, TIM barrel domain SH07_RS16045 PF00381 PTS HPr component phosphorylation site SH07_RS16045 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH07_RS16050 PF05343 M42 glutamyl aminopeptidase SH07_RS16055 PF01321 Creatinase/Prolidase N-terminal domain SH07_RS16055 PF00557 Metallopeptidase family M24 SH07_RS16060 PF02378 Phosphotransferase system, EIIC SH07_RS16065 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH07_RS16070 PF02685 Glucokinase SH07_RS16075 PF00654 Voltage gated chloride channel SH07_RS16080 PF10697 Protein of unknown function (DUF2502) SH07_RS16090 PF01566 Natural resistance-associated macrophage protein SH07_RS16095 PF01773 Na+ dependent nucleoside transporter N-terminus SH07_RS16095 PF07670 Nucleoside recognition SH07_RS16095 PF07662 Na+ dependent nucleoside transporter C-terminus SH07_RS16100 PF01609 Transposase DDE domain SH07_RS16105 PF00563 EAL domain SH07_RS16105 PF05231 MASE1 SH07_RS16120 PF07037 Putative transcription regulator (DUF1323) SH07_RS16125 PF07037 Putative transcription regulator (DUF1323) SH07_RS16130 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH07_RS16155 PF03466 LysR substrate binding domain SH07_RS16155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS16165 PF03825 Nucleoside H+ symporter SH07_RS16170 PF01048 Phosphorylase superfamily SH07_RS16175 PF03502 Nucleoside-specific channel-forming protein, Tsx SH07_RS16180 PF03466 LysR substrate binding domain SH07_RS16180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS16185 PF13593 SBF-like CPA transporter family (DUF4137) SH07_RS16190 PF12843 Putative quorum-sensing-regulated virulence factor SH07_RS16195 PF03120 NAD-dependent DNA ligase OB-fold domain SH07_RS16195 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SH07_RS16195 PF12826 Helix-hairpin-helix motif SH07_RS16195 PF00533 BRCA1 C Terminus (BRCT) domain SH07_RS16195 PF01653 NAD-dependent DNA ligase adenylation domain SH07_RS16200 PF04354 ZipA, C-terminal FtsZ-binding domain SH07_RS16210 PF00291 Pyridoxal-phosphate dependent enzyme SH07_RS16215 PF00381 PTS HPr component phosphorylation site SH07_RS16220 PF05524 PEP-utilising enzyme, N-terminal SH07_RS16220 PF00391 PEP-utilising enzyme, mobile domain SH07_RS16220 PF02896 PEP-utilising enzyme, TIM barrel domain SH07_RS16225 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH07_RS16230 PF08543 Phosphomethylpyrimidine kinase SH07_RS16235 PF17263 Family of unknown function (DUF5329) SH07_RS16240 PF05406 WGR domain SH07_RS16245 PF00291 Pyridoxal-phosphate dependent enzyme SH07_RS16250 PF00005 ABC transporter SH07_RS16255 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS16260 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS16275 PF01418 Helix-turn-helix domain, rpiR family SH07_RS16275 PF01380 SIS domain SH07_RS16280 PF01380 SIS domain SH07_RS16285 PF02378 Phosphotransferase system, EIIC SH07_RS16285 PF00367 phosphotransferase system, EIIB SH07_RS16290 PF00144 Beta-lactamase SH07_RS16295 PF04261 Dyp-type peroxidase family SH07_RS16300 PF06572 Protein of unknown function (DUF1131) SH07_RS16305 PF11143 Protein of unknown function (DUF2919) SH07_RS16310 PF00583 Acetyltransferase (GNAT) family SH07_RS16315 PF01520 N-acetylmuramoyl-L-alanine amidase SH07_RS16320 PF01218 Coproporphyrinogen III oxidase SH07_RS16325 PF12833 Helix-turn-helix domain SH07_RS16330 PF16365 Ethanolamine utilization protein EutK C-terminus SH07_RS16330 PF00936 BMC domain SH07_RS16335 PF00936 BMC domain SH07_RS16340 PF05985 Ethanolamine ammonia-lyase light chain (EutC) SH07_RS16345 PF06751 Ethanolamine ammonia lyase large subunit (EutB) SH07_RS16350 PF06277 Ethanolamine utilisation protein EutA SH07_RS16355 PF04346 Ethanolamine utilisation protein, EutH SH07_RS16360 PF00465 Iron-containing alcohol dehydrogenase SH07_RS16370 PF00171 Aldehyde dehydrogenase family SH07_RS16375 PF03319 Ethanolamine utilisation protein EutN/carboxysome SH07_RS16380 PF00936 BMC domain SH07_RS16385 PF01515 Phosphate acetyl/butaryl transferase SH07_RS16390 PF01923 Cobalamin adenosyltransferase SH07_RS16395 PF06249 Ethanolamine utilisation protein EutQ SH07_RS16400 PF10662 Ethanolamine utilisation - propanediol utilisation SH07_RS16405 PF00936 BMC domain SH07_RS16410 PF01515 Phosphate acetyl/butaryl transferase SH07_RS16410 PF00390 Malic enzyme, N-terminal domain SH07_RS16410 PF03949 Malic enzyme, NAD binding domain SH07_RS16415 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH07_RS16420 PF00456 Transketolase, thiamine diphosphate binding domain SH07_RS16420 PF02780 Transketolase, C-terminal domain SH07_RS16420 PF02779 Transketolase, pyrimidine binding domain SH07_RS16425 PF06674 Protein of unknown function (DUF1176) SH07_RS16430 PF00293 NUDIX domain SH07_RS16435 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH07_RS16435 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH07_RS16435 PF13247 4Fe-4S dicluster domain SH07_RS16440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS16440 PF07730 Histidine kinase SH07_RS16440 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SH07_RS16440 PF00672 HAMP domain SH07_RS16445 PF00873 AcrB/AcrD/AcrF family SH07_RS16455 PF03960 ArsC family SH07_RS16460 PF01546 Peptidase family M20/M25/M40 SH07_RS16460 PF07687 Peptidase dimerisation domain SH07_RS16465 PF13980 Uncharacterised protein family (UPF0370) SH07_RS16470 PF02230 Phospholipase/Carboxylesterase SH07_RS16475 PF08351 Domain of unknown function (DUF1726) SH07_RS16475 PF13718 GNAT acetyltransferase 2 SH07_RS16475 PF17176 tRNA-binding domain SH07_RS16475 PF05127 Helicase SH07_RS16480 PF04228 Putative neutral zinc metallopeptidase SH07_RS16485 PF01259 SAICAR synthetase SH07_RS16495 PF06804 NlpB/DapX lipoprotein SH07_RS16500 PF00701 Dihydrodipicolinate synthetase family SH07_RS16505 PF01842 ACT domain SH07_RS16510 PF00578 AhpC/TSA family SH07_RS16515 PF12798 4Fe-4S binding domain SH07_RS16515 PF00037 4Fe-4S binding domain SH07_RS16520 PF00361 Proton-conducting membrane transporter SH07_RS16525 PF00146 NADH dehydrogenase SH07_RS16530 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH07_RS16530 PF00361 Proton-conducting membrane transporter SH07_RS16535 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SH07_RS16540 PF00361 Proton-conducting membrane transporter SH07_RS16540 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH07_RS16545 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH07_RS16545 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH07_RS16545 PF00374 Nickel-dependent hydrogenase SH07_RS16550 PF12838 4Fe-4S dicluster domain SH07_RS16555 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH07_RS16560 PF07450 Formate hydrogenlyase maturation protein HycH SH07_RS16565 PF00158 Sigma-54 interaction domain SH07_RS16565 PF01590 GAF domain SH07_RS16570 PF01226 Formate/nitrite transporter SH07_RS16575 PF01594 AI-2E family transporter SH07_RS16580 PF01435 Peptidase family M48 SH07_RS16585 PF03960 ArsC family SH07_RS16590 PF00308 Bacterial dnaA protein SH07_RS16595 PF00860 Permease family SH07_RS16605 PF02769 AIR synthase related protein, C-terminal domain SH07_RS16605 PF00586 AIR synthase related protein, N-terminal domain SH07_RS16610 PF00551 Formyl transferase SH07_RS16615 PF02503 Polyphosphate kinase middle domain SH07_RS16615 PF13090 Polyphosphate kinase C-terminal domain 2 SH07_RS16615 PF17941 Polyphosphate kinase C-terminal domain 1 SH07_RS16615 PF13089 Polyphosphate kinase N-terminal domain SH07_RS16620 PF02541 Ppx/GppA phosphatase family SH07_RS16625 PF05231 MASE1 SH07_RS16625 PF00563 EAL domain SH07_RS16635 PF11119 Protein of unknown function (DUF2633) SH07_RS16640 PF05433 Glycine zipper 2TM domain SH07_RS16645 PF17358 Family of unknown function (DUF5384) SH07_RS16650 PF00117 Glutamine amidotransferase class-I SH07_RS16650 PF00958 GMP synthase C terminal domain SH07_RS16650 PF02540 NAD synthase SH07_RS16655 PF00571 CBS domain SH07_RS16655 PF00478 IMP dehydrogenase / GMP reductase domain SH07_RS16660 PF02601 Exonuclease VII, large subunit SH07_RS16660 PF13742 OB-fold nucleic acid binding domain SH07_RS16665 PF07191 zinc-ribbons SH07_RS16670 PF01926 50S ribosome-binding GTPase SH07_RS16670 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SH07_RS16675 PF13360 PQQ-like domain SH07_RS16680 PF09976 Tetratricopeptide repeat-like domain SH07_RS16685 PF03129 Anticodon binding domain SH07_RS16685 PF13393 Histidyl-tRNA synthetase SH07_RS16690 PF04551 GcpE protein SH07_RS16695 PF13464 Domain of unknown function (DUF4115) SH07_RS16700 PF04055 Radical SAM superfamily SH07_RS16705 PF00334 Nucleoside diphosphate kinase SH07_RS16710 PF00912 Transglycosylase SH07_RS16710 PF00905 Penicillin binding protein transpeptidase domain SH07_RS16710 PF06832 Penicillin-Binding Protein C-terminus Family SH07_RS16715 PF07678 A-macroglobulin TED domain SH07_RS16715 PF00207 Alpha-2-macroglobulin family SH07_RS16715 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain SH07_RS16715 PF11974 Bacterial alpha-2-macroglobulin MG3 domain SH07_RS16715 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain SH07_RS16715 PF07703 Alpha-2-macroglobulin bait region domain SH07_RS16715 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain SH07_RS16715 PF01835 MG2 domain SH07_RS16715 PF17962 Bacterial macroglobulin domain 6 SH07_RS16720 PF00581 Rhodanese-like domain SH07_RS16725 PF07179 SseB protein N-terminal domain SH07_RS16725 PF14581 SseB protein C-terminal domain SH07_RS16730 PF12404 Peptidase SH07_RS16730 PF00883 Cytosol aminopeptidase family, catalytic domain SH07_RS16735 PF04384 Iron-sulphur cluster assembly SH07_RS16740 PF00111 2Fe-2S iron-sulfur cluster binding domain SH07_RS16745 PF00012 Hsp70 protein SH07_RS16750 PF07743 HSCB C-terminal oligomerisation domain SH07_RS16755 PF01521 Iron-sulphur cluster biosynthesis SH07_RS16760 PF01592 NifU-like N terminal domain SH07_RS16765 PF00266 Aminotransferase class-V SH07_RS16770 PF02082 Transcriptional regulator SH07_RS16775 PF00588 SpoU rRNA Methylase family SH07_RS16780 PF00459 Inositol monophosphatase family SH07_RS16785 PF12146 Serine aminopeptidase, S33 SH07_RS16790 PF00874 PRD domain SH07_RS16795 PF12832 MFS_1 like family SH07_RS16800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS16800 PF03466 LysR substrate binding domain SH07_RS16805 PF00355 Rieske [2Fe-2S] domain SH07_RS16805 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SH07_RS16810 PF00866 Ring hydroxylating beta subunit SH07_RS16815 PF00355 Rieske [2Fe-2S] domain SH07_RS16820 PF00106 short chain dehydrogenase SH07_RS16825 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH07_RS16825 PF14759 Reductase C-terminal SH07_RS16830 PF07681 DoxX SH07_RS16835 PF01263 Aldose 1-epimerase SH07_RS16840 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS16840 PF00107 Zinc-binding dehydrogenase SH07_RS16845 PF02653 Branched-chain amino acid transport system / permease component SH07_RS16850 PF00005 ABC transporter SH07_RS16855 PF13407 Periplasmic binding protein domain SH07_RS16860 PF13181 Tetratricopeptide repeat SH07_RS16860 PF17128 Domain of unknown function (DUF5107) SH07_RS16865 PF00480 ROK family SH07_RS16870 PF00464 Serine hydroxymethyltransferase SH07_RS16875 PF00970 Oxidoreductase FAD-binding domain SH07_RS16875 PF00175 Oxidoreductase NAD-binding domain SH07_RS16875 PF00042 Globin SH07_RS16880 PF00543 Nitrogen regulatory protein P-II SH07_RS16885 PF00158 Sigma-54 interaction domain SH07_RS16885 PF00072 Response regulator receiver domain SH07_RS16890 PF13942 YfhG lipoprotein SH07_RS16895 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS16895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS16900 PF02769 AIR synthase related protein, C-terminal domain SH07_RS16900 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SH07_RS16900 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal SH07_RS16905 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH07_RS16905 PF01464 Transglycosylase SLT domain SH07_RS16910 PF14437 MafB19-like deaminase SH07_RS16920 PF01380 SIS domain SH07_RS16920 PF01418 Helix-turn-helix domain, rpiR family SH07_RS16925 PF12838 4Fe-4S dicluster domain SH07_RS16945 PF01648 4'-phosphopantetheinyl transferase superfamily SH07_RS16950 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SH07_RS16955 PF02565 Recombination protein O C terminal SH07_RS16955 PF11967 Recombination protein O N terminal SH07_RS16960 PF01926 50S ribosome-binding GTPase SH07_RS16960 PF07650 KH domain SH07_RS16965 PF00035 Double-stranded RNA binding motif SH07_RS16965 PF14622 Ribonuclease-III-like SH07_RS16970 PF10502 Signal peptidase, peptidase S26 SH07_RS16975 PF00009 Elongation factor Tu GTP binding domain SH07_RS16975 PF00679 Elongation factor G C-terminus SH07_RS16975 PF03144 Elongation factor Tu domain 2 SH07_RS16975 PF06421 GTP-binding protein LepA C-terminus SH07_RS16985 PF17188 MucB/RseB C-terminal domain SH07_RS16985 PF03888 MucB/RseB N-terminal domain SH07_RS16990 PF03872 Anti sigma-E protein RseA, N-terminal domain SH07_RS16990 PF03873 Anti sigma-E protein RseA, C-terminal domain SH07_RS16995 PF08281 Sigma-70, region 4 SH07_RS16995 PF04542 Sigma-70 region 2 SH07_RS17005 PF02910 Fumarate reductase flavoprotein C-term SH07_RS17005 PF00890 FAD binding domain SH07_RS17010 PF05175 Methyltransferase small domain SH07_RS17015 PF00270 DEAD/DEAH box helicase SH07_RS17015 PF00271 Helicase conserved C-terminal domain SH07_RS17025 PF03466 LysR substrate binding domain SH07_RS17025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS17030 PF01810 LysE type translocator SH07_RS17035 PF01228 Glycine radical SH07_RS17040 PF03167 Uracil DNA glycosylase superfamily SH07_RS17045 PF08032 RNA 2'-O ribose methyltransferase substrate binding SH07_RS17045 PF00588 SpoU rRNA Methylase family SH07_RS17055 PF00085 Thioredoxin SH07_RS17060 PF03942 DTW domain SH07_RS17065 PF00583 Acetyltransferase (GNAT) family SH07_RS17065 PF13607 Succinyl-CoA ligase like flavodoxin domain SH07_RS17065 PF13380 CoA binding domain SH07_RS17070 PF13091 PLD-like domain SH07_RS17075 PF10043 Predicted periplasmic lipoprotein (DUF2279) SH07_RS17080 PF00083 Sugar (and other) transporter SH07_RS17110 PF00004 ATPase family associated with various cellular activities (AAA) SH07_RS17110 PF07724 AAA domain (Cdc48 subfamily) SH07_RS17110 PF10431 C-terminal, D2-small domain, of ClpB protein SH07_RS17110 PF02861 Clp amino terminal domain, pathogenicity island component SH07_RS17110 PF17871 AAA lid domain SH07_RS17115 PF02578 Multi-copper polyphenol oxidoreductase laccase SH07_RS17120 PF00849 RNA pseudouridylate synthase SH07_RS17120 PF01479 S4 domain SH07_RS17125 PF13525 Outer membrane lipoprotein SH07_RS17135 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SH07_RS17140 PF01817 Chorismate mutase type II SH07_RS17140 PF00800 Prephenate dehydratase SH07_RS17145 PF01817 Chorismate mutase type II SH07_RS17145 PF02153 Prephenate dehydrogenase SH07_RS17150 PF00793 DAHP synthetase I family SH07_RS17155 PF10973 Protein of unknown function (DUF2799) SH07_RS17160 PF13689 YfiR/HmsC-like SH07_RS17165 PF17152 Periplasmic sensor domain SH07_RS17165 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS17170 PF00691 OmpA family SH07_RS17175 PF01245 Ribosomal protein L19 SH07_RS17180 PF01746 tRNA (Guanine-1)-methyltransferase SH07_RS17185 PF05239 PRC-barrel domain SH07_RS17185 PF01782 RimM N-terminal domain SH07_RS17190 PF00886 Ribosomal protein S16 SH07_RS17195 PF00448 SRP54-type protein, GTPase domain SH07_RS17195 PF02881 SRP54-type protein, helical bundle domain SH07_RS17195 PF02978 Signal peptide binding domain SH07_RS17200 PF01578 Cytochrome C assembly protein SH07_RS17205 PF03471 Transporter associated domain SH07_RS17205 PF01595 Cyclin M transmembrane N-terminal domain SH07_RS17205 PF00571 CBS domain SH07_RS17210 PF01025 GrpE SH07_RS17220 PF01513 ATP-NAD kinase SH07_RS17225 PF02463 RecF/RecN/SMC N terminal domain SH07_RS17230 PF04355 SmpA / OmlA family SH07_RS17235 PF03658 RnfH family Ubiquitin SH07_RS17240 PF03364 Polyketide cyclase / dehydrase and lipid transport SH07_RS17245 PF01668 SmpB protein SH07_RS17250 PF00589 Phage integrase family SH07_RS17250 PF13356 Arm DNA-binding domain SH07_RS17260 PF05930 Prophage CP4-57 regulatory protein (AlpA) SH07_RS17265 PF13148 Protein of unknown function (DUF3987) SH07_RS17275 PF00271 Helicase conserved C-terminal domain SH07_RS17280 PF08878 Domain of unknown function (DUF1837) SH07_RS17280 PF14130 Domain of unknown function (DUF4297) SH07_RS17285 PF07510 Protein of unknown function (DUF1524) SH07_RS17290 PF15935 RNase LS, bacterial toxin SH07_RS17295 PF15933 Antitoxin to bacterial toxin RNase LS or RnlA SH07_RS17300 PF01926 50S ribosome-binding GTPase SH07_RS17305 PF06067 Domain of unknown function (DUF932) SH07_RS17310 PF08220 DeoR-like helix-turn-helix domain SH07_RS17310 PF13280 WYL domain SH07_RS17345 PF03230 Antirestriction protein SH07_RS17350 PF04002 RadC-like JAB domain SH07_RS17355 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH07_RS17360 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH07_RS17365 PF03212 Pertactin SH07_RS17365 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH07_RS17365 PF03797 Autotransporter beta-domain SH07_RS17380 PF17621 Family of unknown function (DUF5508) SH07_RS17385 PF17612 Family of unknown function (DUF5507) SH07_RS17400 PF00128 Alpha amylase, catalytic domain SH07_RS17405 PF00128 Alpha amylase, catalytic domain SH07_RS17410 PF00128 Alpha amylase, catalytic domain SH07_RS17415 PF08943 CsiD SH07_RS17420 PF01266 FAD dependent oxidoreductase SH07_RS17425 PF00171 Aldehyde dehydrogenase family SH07_RS17430 PF00202 Aminotransferase class-III SH07_RS17435 PF00324 Amino acid permease SH07_RS17440 PF00392 Bacterial regulatory proteins, gntR family SH07_RS17440 PF07729 FCD domain SH07_RS17445 PF01476 LysM domain SH07_RS17445 PF04972 BON domain SH07_RS17450 PF01679 Proteolipid membrane potential modulator SH07_RS17455 PF01022 Bacterial regulatory protein, arsR family SH07_RS17460 PF00581 Rhodanese-like domain SH07_RS17460 PF11127 Protein of unknown function (DUF2892) SH07_RS17465 PF00816 H-NS histone family SH07_RS17470 PF06610 L-alanine exporter SH07_RS17475 PF09400 Protein of unknown function (DUF2002) SH07_RS17480 PF05957 Bacterial protein of unknown function (DUF883) SH07_RS17485 PF00462 Glutaredoxin SH07_RS17490 PF07972 NrdI Flavodoxin like SH07_RS17495 PF08343 Ribonucleotide reductase N-terminal SH07_RS17495 PF02867 Ribonucleotide reductase, barrel domain SH07_RS17495 PF00317 Ribonucleotide reductase, all-alpha domain SH07_RS17500 PF00268 Ribonucleotide reductase, small chain SH07_RS17505 PF00571 CBS domain SH07_RS17505 PF00005 ABC transporter SH07_RS17510 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS17515 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH07_RS17525 PF03591 AzlC protein SH07_RS17530 PF05437 Branched-chain amino acid transport protein (AzlD) SH07_RS17535 PF01047 MarR family SH07_RS17540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH07_RS17540 PF00529 HlyD membrane-fusion protein of T1SS SH07_RS17545 PF07690 Major Facilitator Superfamily SH07_RS17550 PF02664 S-Ribosylhomocysteinase (LuxS) SH07_RS17555 PF04262 Glutamate-cysteine ligase SH07_RS17560 PF09335 SNARE associated Golgi protein SH07_RS17565 PF13419 Haloacid dehalogenase-like hydrolase SH07_RS17600 PF02599 Global regulator protein family SH07_RS17605 PF02272 DHHA1 domain SH07_RS17605 PF01411 tRNA synthetases class II (A) SH07_RS17605 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SH07_RS17615 PF02631 RecX family SH07_RS17630 PF00302 Chloramphenicol acetyltransferase SH07_RS17635 PF02464 Competence-damaged protein SH07_RS17640 PF13406 Transglycosylase SLT domain SH07_RS17645 PF03608 PTS system enzyme II sorbitol-specific factor SH07_RS17650 PF03612 Sorbitol phosphotransferase enzyme II N-terminus SH07_RS17650 PF07663 Sorbitol phosphotransferase enzyme II C-terminus SH07_RS17655 PF03829 PTS system glucitol/sorbitol-specific IIA component SH07_RS17660 PF00106 short chain dehydrogenase SH07_RS17665 PF06923 Glucitol operon activator protein (GutM) SH07_RS17670 PF00455 DeoR C terminal sensor domain SH07_RS17670 PF08220 DeoR-like helix-turn-helix domain SH07_RS17675 PF01380 SIS domain SH07_RS17675 PF00571 CBS domain SH07_RS17680 PF00158 Sigma-54 interaction domain SH07_RS17680 PF01590 GAF domain SH07_RS17685 PF00753 Metallo-beta-lactamase superfamily SH07_RS17685 PF00301 Rubredoxin SH07_RS17685 PF00258 Flavodoxin SH07_RS17690 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH07_RS17690 PF18113 Rubredoxin binding C-terminal domain SH07_RS17695 PF00708 Acylphosphatase SH07_RS17695 PF17788 HypF Kae1-like domain SH07_RS17695 PF01300 Telomere recombination SH07_RS17695 PF07503 HypF finger SH07_RS17700 PF13247 4Fe-4S dicluster domain SH07_RS17700 PF12800 4Fe-4S binding domain SH07_RS17705 PF00356 Bacterial regulatory proteins, lacI family SH07_RS17710 PF02378 Phosphotransferase system, EIIC SH07_RS17710 PF00367 phosphotransferase system, EIIB SH07_RS17715 PF00232 Glycosyl hydrolase family 1 SH07_RS17720 PF01750 Hydrogenase maturation protease SH07_RS17725 PF07450 Formate hydrogenlyase maturation protein HycH SH07_RS17730 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH07_RS17735 PF12838 4Fe-4S dicluster domain SH07_RS17740 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH07_RS17740 PF00374 Nickel-dependent hydrogenase SH07_RS17740 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH07_RS17745 PF00146 NADH dehydrogenase SH07_RS17750 PF00361 Proton-conducting membrane transporter SH07_RS17755 PF13247 4Fe-4S dicluster domain SH07_RS17765 PF11046 Transcriptional repressor of hyc and hyp operons SH07_RS17770 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SH07_RS17775 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH07_RS17780 PF01455 HupF/HypC family SH07_RS17785 PF01924 Hydrogenase formation hypA family SH07_RS17790 PF02769 AIR synthase related protein, C-terminal domain SH07_RS17790 PF00586 AIR synthase related protein, N-terminal domain SH07_RS17795 PF00158 Sigma-54 interaction domain SH07_RS17795 PF01590 GAF domain SH07_RS17800 PF11756 Nitrous oxide-stimulated promoter SH07_RS17805 PF05192 MutS domain III SH07_RS17805 PF05188 MutS domain II SH07_RS17805 PF01624 MutS domain I SH07_RS17805 PF00488 MutS domain V SH07_RS17805 PF05190 MutS family domain IV SH07_RS17810 PF00149 Calcineurin-like phosphoesterase SH07_RS17815 PF00455 DeoR C terminal sensor domain SH07_RS17815 PF08220 DeoR-like helix-turn-helix domain SH07_RS17820 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH07_RS17820 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH07_RS17825 PF07005 Sugar-binding N-terminal domain SH07_RS17825 PF17042 Nucleotide-binding C-terminal domain SH07_RS17830 PF00596 Class II Aldolase and Adducin N-terminal domain SH07_RS17835 PF01261 Xylose isomerase-like TIM barrel SH07_RS17840 PF02447 GntP family permease SH07_RS17845 PF00140 Sigma-70 factor, region 1.2 SH07_RS17845 PF04542 Sigma-70 region 2 SH07_RS17845 PF04545 Sigma-70, region 4 SH07_RS17845 PF04539 Sigma-70 region 3 SH07_RS17850 PF01551 Peptidase family M23 SH07_RS17850 PF01476 LysM domain SH07_RS17860 PF01975 Survival protein SurE SH07_RS17865 PF01142 tRNA pseudouridine synthase D (TruD) SH07_RS17870 PF02542 YgbB family SH07_RS17875 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SH07_RS17880 PF04977 Septum formation initiator SH07_RS17885 PF12084 Protein of unknown function (DUF3561) SH07_RS17895 PF00009 Elongation factor Tu GTP binding domain SH07_RS17900 PF01507 Phosphoadenosine phosphosulfate reductase family SH07_RS17905 PF04389 Peptidase family M28 SH07_RS17910 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) SH07_RS17915 PF01867 CRISPR associated protein Cas1 SH07_RS17920 PF08798 CRISPR associated protein SH07_RS17925 PF09704 CRISPR-associated protein (Cas_Cas5) SH07_RS17930 PF09344 CT1975-like protein SH07_RS17935 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) SH07_RS17940 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) SH07_RS17945 PF18019 HD domain SH07_RS17945 PF00271 Helicase conserved C-terminal domain SH07_RS17945 PF00270 DEAD/DEAH box helicase SH07_RS17950 PF01507 Phosphoadenosine phosphosulfate reductase family SH07_RS17955 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SH07_RS17955 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SH07_RS17960 PF00175 Oxidoreductase NAD-binding domain SH07_RS17960 PF00258 Flavodoxin SH07_RS17960 PF00667 FAD binding domain SH07_RS17965 PF01242 6-pyruvoyl tetrahydropterin synthase SH07_RS17970 PF01266 FAD dependent oxidoreductase SH07_RS17980 PF04309 Glycerol-3-phosphate responsive antiterminator SH07_RS17985 PF01012 Electron transfer flavoprotein domain SH07_RS17985 PF00766 Electron transfer flavoprotein FAD-binding domain SH07_RS17990 PF01012 Electron transfer flavoprotein domain SH07_RS17995 PF00083 Sugar (and other) transporter SH07_RS18000 PF01565 FAD binding domain SH07_RS18000 PF02913 FAD linked oxidases, C-terminal domain SH07_RS18010 PF07690 Major Facilitator Superfamily SH07_RS18015 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH07_RS18015 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH07_RS18020 PF04055 Radical SAM superfamily SH07_RS18030 PF04536 TPM domain SH07_RS18035 PF00113 Enolase, C-terminal TIM barrel domain SH07_RS18035 PF03952 Enolase, N-terminal domain SH07_RS18040 PF06418 CTP synthase N-terminus SH07_RS18040 PF00117 Glutamine amidotransferase class-I SH07_RS18045 PF03819 MazG nucleotide pyrophosphohydrolase domain SH07_RS18050 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SH07_RS18055 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SH07_RS18060 PF02824 TGS domain SH07_RS18060 PF04607 Region found in RelA / SpoT proteins SH07_RS18060 PF13291 ACT domain SH07_RS18065 PF01938 TRAM domain SH07_RS18065 PF05958 tRNA (Uracil-5-)-methyltransferase SH07_RS18070 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SH07_RS18070 PF00072 Response regulator receiver domain SH07_RS18070 PF01627 Hpt domain SH07_RS18070 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS18070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS18070 PF00672 HAMP domain SH07_RS18075 PF13378 Enolase C-terminal domain-like SH07_RS18080 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH07_RS18080 PF13378 Enolase C-terminal domain-like SH07_RS18085 PF07690 Major Facilitator Superfamily SH07_RS18090 PF00258 Flavodoxin SH07_RS18095 PF00849 RNA pseudouridylate synthase SH07_RS18100 PF04287 tRNA pseudouridine synthase C SH07_RS18110 PF07348 Syd protein (SUKH-2) SH07_RS18115 PF14489 QueF-like protein SH07_RS18115 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term SH07_RS18120 PF03641 Possible lysine decarboxylase SH07_RS18120 PF11892 Domain of unknown function (DUF3412) SH07_RS18120 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases SH07_RS18130 PF03315 Serine dehydratase beta chain SH07_RS18130 PF03313 Serine dehydratase alpha chain SH07_RS18135 PF01367 5'-3' exonuclease, C-terminal SAM fold SH07_RS18135 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SH07_RS18140 PF00465 Iron-containing alcohol dehydrogenase SH07_RS18145 PF00596 Class II Aldolase and Adducin N-terminal domain SH07_RS18150 PF07690 Major Facilitator Superfamily SH07_RS18155 PF07881 L-fucose isomerase, first N-terminal domain SH07_RS18155 PF02952 L-fucose isomerase, C-terminal domain SH07_RS18155 PF07882 L-fucose isomerase, second N-terminal domain SH07_RS18160 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH07_RS18160 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH07_RS18165 PF05025 RbsD / FucU transport protein family SH07_RS18170 PF00455 DeoR C terminal sensor domain SH07_RS18170 PF08220 DeoR-like helix-turn-helix domain SH07_RS18175 PF18125 RlmM ferredoxin-like domain SH07_RS18175 PF01728 FtsJ-like methyltransferase SH07_RS18180 PF04241 Protein of unknown function (DUF423) SH07_RS18185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS18185 PF03466 LysR substrate binding domain SH07_RS18190 PF06004 Bacterial protein of unknown function (DUF903) SH07_RS18195 PF00266 Aminotransferase class-V SH07_RS18200 PF02657 Fe-S metabolism associated domain SH07_RS18205 PF00899 ThiF family SH07_RS18210 PF03562 MltA specific insert domain SH07_RS18210 PF06725 3D domain SH07_RS18230 PF11741 AMIN domain SH07_RS18230 PF01520 N-acetylmuramoyl-L-alanine amidase SH07_RS18235 PF00583 Acetyltransferase (GNAT) family SH07_RS18235 PF00696 Amino acid kinase family SH07_RS18245 PF12705 PD-(D/E)XK nuclease superfamily SH07_RS18245 PF00580 UvrD/REP helicase N-terminal domain SH07_RS18245 PF13361 UvrD-like helicase C-terminal domain SH07_RS18250 PF05193 Peptidase M16 inactive domain SH07_RS18250 PF16187 Middle or third domain of peptidase_M16 SH07_RS18250 PF00675 Insulinase (Peptidase family M16) SH07_RS18255 PF17946 RecC C-terminal domain SH07_RS18260 PF07963 Prokaryotic N-terminal methylation motif SH07_RS18260 PF12528 Type II secretion prepilin peptidase dependent protein C SH07_RS18265 PF10713 Protein of unknown function (DUF2509) SH07_RS18270 PF07963 Prokaryotic N-terminal methylation motif SH07_RS18275 PF07963 Prokaryotic N-terminal methylation motif SH07_RS18280 PF00303 Thymidylate synthase SH07_RS18285 PF01790 Prolipoprotein diacylglyceryl transferase SH07_RS18290 PF02896 PEP-utilising enzyme, TIM barrel domain SH07_RS18290 PF01590 GAF domain SH07_RS18290 PF05524 PEP-utilising enzyme, N-terminal SH07_RS18290 PF00391 PEP-utilising enzyme, mobile domain SH07_RS18295 PF00293 NUDIX domain SH07_RS18310 PF02976 DNA mismatch repair enzyme MutH SH07_RS18315 PF03741 Integral membrane protein TerC family SH07_RS18320 PF06004 Bacterial protein of unknown function (DUF903) SH07_RS18325 PF00248 Aldo/keto reductase family SH07_RS18330 PF07690 Major Facilitator Superfamily SH07_RS18335 PF01553 Acyltransferase SH07_RS18335 PF00501 AMP-binding enzyme SH07_RS18340 PF00356 Bacterial regulatory proteins, lacI family SH07_RS18345 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SH07_RS18345 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SH07_RS18350 PF03466 LysR substrate binding domain SH07_RS18350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS18355 PF01177 Asp/Glu/Hydantoin racemase SH07_RS18360 PF00083 Sugar (and other) transporter SH07_RS18370 PF04962 KduI/IolB family SH07_RS18375 PF02803 Thiolase, C-terminal domain SH07_RS18375 PF00108 Thiolase, N-terminal domain SH07_RS18380 PF03222 Tryptophan/tyrosine permease family SH07_RS18385 PF00196 Bacterial regulatory proteins, luxR family SH07_RS18390 PF00486 Transcriptional regulatory protein, C terminal SH07_RS18410 PF07720 Tetratricopeptide repeat SH07_RS18415 PF00486 Transcriptional regulatory protein, C terminal SH07_RS18425 PF01464 Transglycosylase SLT domain SH07_RS18430 PF00196 Bacterial regulatory proteins, luxR family SH07_RS18430 PF00072 Response regulator receiver domain SH07_RS18435 PF00196 Bacterial regulatory proteins, luxR family SH07_RS18435 PF00072 Response regulator receiver domain SH07_RS18450 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) SH07_RS18455 PF00665 Integrase core domain SH07_RS18455 PF13276 HTH-like domain SH07_RS18460 PF01527 Transposase SH07_RS18480 PF01551 Peptidase family M23 SH07_RS18480 PF01476 LysM domain SH07_RS18485 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH07_RS18485 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH07_RS18490 PF03450 CO dehydrogenase flavoprotein C-terminal domain SH07_RS18490 PF00941 FAD binding domain in molybdopterin dehydrogenase SH07_RS18495 PF01799 [2Fe-2S] binding domain SH07_RS18495 PF00111 2Fe-2S iron-sulfur cluster binding domain SH07_RS18500 PF02954 Bacterial regulatory protein, Fis family SH07_RS18500 PF13188 PAS domain SH07_RS18500 PF00158 Sigma-54 interaction domain SH07_RS18505 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH07_RS18505 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH07_RS18510 PF00291 Pyridoxal-phosphate dependent enzyme SH07_RS18515 PF07687 Peptidase dimerisation domain SH07_RS18515 PF01546 Peptidase family M20/M25/M40 SH07_RS18520 PF01979 Amidohydrolase family SH07_RS18525 PF00696 Amino acid kinase family SH07_RS18530 PF02625 XdhC and CoxI family SH07_RS18530 PF13478 XdhC Rossmann domain SH07_RS18540 PF12804 MobA-like NTP transferase domain SH07_RS18545 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH07_RS18545 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH07_RS18550 PF01979 Amidohydrolase family SH07_RS18555 PF00941 FAD binding domain in molybdopterin dehydrogenase SH07_RS18560 PF01799 [2Fe-2S] binding domain SH07_RS18560 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH07_RS18560 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH07_RS18565 PF00860 Permease family SH07_RS18570 PF01979 Amidohydrolase family SH07_RS18575 PF00860 Permease family SH07_RS18580 PF13247 4Fe-4S dicluster domain SH07_RS18585 PF13247 4Fe-4S dicluster domain SH07_RS18585 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH07_RS18585 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH07_RS18595 PF00860 Permease family SH07_RS18605 PF00293 NUDIX domain SH07_RS18610 PF00152 tRNA synthetases class II (D, K and N) SH07_RS18610 PF01336 OB-fold nucleic acid binding domain SH07_RS18615 PF03462 PCRF domain SH07_RS18615 PF00472 RF-1 domain SH07_RS18620 PF17768 RecJ OB domain SH07_RS18620 PF02272 DHHA1 domain SH07_RS18620 PF01368 DHH family SH07_RS18625 PF13098 Thioredoxin-like domain SH07_RS18625 PF10411 Disulfide bond isomerase protein N-terminus SH07_RS18630 PF00589 Phage integrase family SH07_RS18630 PF02899 Phage integrase, N-terminal SAM-like domain SH07_RS18635 PF00258 Flavodoxin SH07_RS18640 PF07254 Membrane-bound toxin component of toxin-antitoxin system SH07_RS18645 PF03937 Flavinator of succinate dehydrogenase SH07_RS18650 PF01571 Aminomethyltransferase folate-binding domain SH07_RS18655 PF03006 Haemolysin-III related SH07_RS18660 PF04266 ASCH domain SH07_RS18665 PF00232 Glycosyl hydrolase family 1 SH07_RS18675 PF02347 Glycine cleavage system P-protein SH07_RS18680 PF01597 Glycine cleavage H-protein SH07_RS18685 PF01571 Aminomethyltransferase folate-binding domain SH07_RS18685 PF08669 Glycine cleavage T-protein C-terminal barrel domain SH07_RS18690 PF01494 FAD binding domain SH07_RS18695 PF01494 FAD binding domain SH07_RS18700 PF00557 Metallopeptidase family M24 SH07_RS18700 PF05195 Aminopeptidase P, N-terminal domain SH07_RS18705 PF03695 Uncharacterised protein family (UPF0149) SH07_RS18710 PF05164 Cell division protein ZapA SH07_RS18715 PF01812 5-formyltetrahydrofolate cyclo-ligase family SH07_RS18720 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH07_RS18720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH07_RS18720 PF01842 ACT domain SH07_RS18725 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SH07_RS18730 PF03466 LysR substrate binding domain SH07_RS18735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS18735 PF03466 LysR substrate binding domain SH07_RS18740 PF01642 Methylmalonyl-CoA mutase SH07_RS18740 PF02310 B12 binding domain SH07_RS18750 PF00378 Enoyl-CoA hydratase/isomerase SH07_RS18755 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain SH07_RS18755 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain SH07_RS18760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS18760 PF03466 LysR substrate binding domain SH07_RS18765 PF04402 Protein of unknown function (DUF541) SH07_RS18770 PF01810 LysE type translocator SH07_RS18775 PF00924 Mechanosensitive ion channel SH07_RS18775 PF05552 Conserved TM helix SH07_RS18780 PF01116 Fructose-bisphosphate aldolase class-II SH07_RS18785 PF00162 Phosphoglycerate kinase SH07_RS18790 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH07_RS18790 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH07_RS18800 PF05068 Mannitol repressor SH07_RS18805 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded SH07_RS18810 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS18810 PF00107 Zinc-binding dehydrogenase SH07_RS18815 PF02378 Phosphotransferase system, EIIC SH07_RS18815 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH07_RS18820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH07_RS18825 PF02779 Transketolase, pyrimidine binding domain SH07_RS18825 PF02780 Transketolase, C-terminal domain SH07_RS18825 PF00456 Transketolase, thiamine diphosphate binding domain SH07_RS18830 PF01435 Peptidase family M48 SH07_RS18835 PF00491 Arginase family SH07_RS18840 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SH07_RS18840 PF17944 Arginine decarboxylase C-terminal helical extension SH07_RS18840 PF17810 Arginine decarboxylase helical bundle domain SH07_RS18845 PF11036 Virulence promoting factor SH07_RS18850 PF17430 Uncharacterized YqgC-like SH07_RS18860 PF00438 S-adenosylmethionine synthetase, N-terminal domain SH07_RS18860 PF02772 S-adenosylmethionine synthetase, central domain SH07_RS18860 PF02773 S-adenosylmethionine synthetase, C-terminal domain SH07_RS18870 PF17283 SprT-like zinc ribbon domain SH07_RS18870 PF10263 SprT-like family SH07_RS18875 PF04231 Endonuclease I SH07_RS18880 PF04452 RNA methyltransferase SH07_RS18885 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain SH07_RS18885 PF02951 Prokaryotic glutathione synthetase, N-terminal domain SH07_RS18890 PF02622 Uncharacterized ACR, COG1678 SH07_RS18895 PF03652 Holliday junction resolvase SH07_RS18900 PF00437 Type II/IV secretion system protein SH07_RS18905 PF01168 Alanine racemase, N-terminal domain SH07_RS18910 PF02325 YGGT family SH07_RS18915 PF02594 Uncharacterised ACR, YggU family COG1872 SH07_RS18920 PF01725 Ham1 family SH07_RS18925 PF04055 Radical SAM superfamily SH07_RS18925 PF06969 HemN C-terminal domain SH07_RS18930 PF06717 Protein of unknown function (DUF1202) SH07_RS18935 PF17763 Glutaminase/Asparaginase C-terminal domain SH07_RS18935 PF00710 Asparaginase, N-terminal SH07_RS18940 PF11101 Protein of unknown function (DUF2884) SH07_RS18950 PF04320 Protein with unknown function (DUF469) SH07_RS18955 PF02390 Putative methyltransferase SH07_RS18960 PF00730 HhH-GPD superfamily base excision DNA repair protein SH07_RS18960 PF10576 Iron-sulfur binding domain of endonuclease III SH07_RS18960 PF00633 Helix-hairpin-helix motif SH07_RS18960 PF14815 NUDIX domain SH07_RS18965 PF04362 Bacterial Fe(2+) trafficking SH07_RS18970 PF01464 Transglycosylase SLT domain SH07_RS18970 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain SH07_RS18975 PF03825 Nucleoside H+ symporter SH07_RS18980 PF01276 Orn/Lys/Arg decarboxylase, major domain SH07_RS18980 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH07_RS18980 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH07_RS18985 PF04474 Protein of unknown function (DUF554) SH07_RS18995 PF04612 Type II secretion system (T2SS), protein M SH07_RS19000 PF12693 GspL periplasmic domain SH07_RS19005 PF11356 Type II secretion system protein C SH07_RS19010 PF16549 Type II secretion system (T2SS) pilotin, S protein SH07_RS19015 PF06750 Bacterial Peptidase A24 N-terminal domain SH07_RS19015 PF01478 Type IV leader peptidase family SH07_RS19020 PF13322 Domain of unknown function (DUF4092) SH07_RS19020 PF13402 Peptidase M60, enhancin and enhancin-like SH07_RS19020 PF17291 N-terminal domain of M60-like peptidases SH07_RS19030 PF02652 L-lactate permease SH07_RS19035 PF01274 Malate synthase SH07_RS19040 PF03928 Haem-degrading SH07_RS19045 PF13183 4Fe-4S dicluster domain SH07_RS19045 PF02754 Cysteine-rich domain SH07_RS19050 PF01565 FAD binding domain SH07_RS19055 PF02913 FAD linked oxidases, C-terminal domain SH07_RS19055 PF01565 FAD binding domain SH07_RS19060 PF00392 Bacterial regulatory proteins, gntR family SH07_RS19060 PF07729 FCD domain SH07_RS19070 PF05598 Transposase domain (DUF772) SH07_RS19070 PF01609 Transposase DDE domain SH07_RS19075 PF01943 Polysaccharide biosynthesis protein SH07_RS19095 PF01384 Phosphate transporter family SH07_RS19100 PF03738 Glutathionylspermidine synthase preATP-grasp SH07_RS19100 PF05257 CHAP domain SH07_RS19105 PF02798 Glutathione S-transferase, N-terminal domain SH07_RS19110 PF01455 HupF/HypC family SH07_RS19115 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SH07_RS19120 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE SH07_RS19125 PF01750 Hydrogenase maturation protease SH07_RS19130 PF00374 Nickel-dependent hydrogenase SH07_RS19135 PF03916 Polysulphide reductase, NrfD SH07_RS19140 PF13247 4Fe-4S dicluster domain SH07_RS19145 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH07_RS19145 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SH07_RS19155 PF11115 Protein of unknown function (DUF2623) SH07_RS19165 PF00248 Aldo/keto reductase family SH07_RS19170 PF03350 Uncharacterized protein family, UPF0114 SH07_RS19180 PF02472 Biopolymer transport protein ExbD/TolR SH07_RS19185 PF01618 MotA/TolQ/ExbB proton channel family SH07_RS19195 PF01053 Cys/Met metabolism PLP-dependent enzyme SH07_RS19200 PF09335 SNARE associated Golgi protein SH07_RS19205 PF12833 Helix-turn-helix domain SH07_RS19205 PF06719 AraC-type transcriptional regulator N-terminus SH07_RS19215 PF00465 Iron-containing alcohol dehydrogenase SH07_RS19220 PF00248 Aldo/keto reductase family SH07_RS19225 PF12883 Protein of unknown function (DUF3828) SH07_RS19230 PF04728 Lipoprotein leucine-zipper SH07_RS19235 PF04055 Radical SAM superfamily SH07_RS19235 PF08497 Radical SAM N-terminal SH07_RS19235 PF11842 Domain of unknown function (DUF3362) SH07_RS19240 PF07731 Multicopper oxidase SH07_RS19240 PF00394 Multicopper oxidase SH07_RS19240 PF07732 Multicopper oxidase SH07_RS19245 PF01553 Acyltransferase SH07_RS19250 PF03989 DNA gyrase C-terminal domain, beta-propeller SH07_RS19250 PF00521 DNA gyrase/topoisomerase IV, subunit A SH07_RS19255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH07_RS19260 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA SH07_RS19265 PF15723 Motility quorum-sensing regulator, toxin of MqsA SH07_RS19270 PF06445 GyrI-like small molecule binding domain SH07_RS19275 PF04076 Bacterial OB fold (BOF) protein SH07_RS19280 PF00486 Transcriptional regulatory protein, C terminal SH07_RS19280 PF00072 Response regulator receiver domain SH07_RS19285 PF08521 Two-component sensor kinase N-terminal SH07_RS19285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS19285 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS19290 PF10840 Protein of unknown function (DUF2645) SH07_RS19295 PF02525 Flavodoxin-like fold SH07_RS19300 PF03992 Antibiotic biosynthesis monooxygenase SH07_RS19305 PF00204 DNA gyrase B SH07_RS19305 PF00986 DNA gyrase B subunit, carboxyl terminus SH07_RS19305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS19305 PF01751 Toprim domain SH07_RS19310 PF05728 Uncharacterised protein family (UPF0227) SH07_RS19315 PF00149 Calcineurin-like phosphoesterase SH07_RS19320 PF06853 Protein of unknown function (DUF1249) SH07_RS19325 PF00293 NUDIX domain SH07_RS19330 PF02321 Outer membrane efflux protein SH07_RS19340 PF06693 Protein of unknown function (DUF1190) SH07_RS19345 PF03738 Glutathionylspermidine synthase preATP-grasp SH07_RS19350 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SH07_RS19355 PF02535 ZIP Zinc transporter SH07_RS19365 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SH07_RS19370 PF04380 Membrane fusogenic activity SH07_RS19375 PF00419 Fimbrial protein SH07_RS19380 PF01527 Transposase SH07_RS19385 PF00665 Integrase core domain SH07_RS19385 PF13276 HTH-like domain SH07_RS19390 PF00577 Outer membrane usher protein SH07_RS19390 PF13954 PapC N-terminal domain SH07_RS19390 PF13953 PapC C-terminal domain SH07_RS19395 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH07_RS19395 PF02753 Pili assembly chaperone PapD, C-terminal domain SH07_RS19405 PF08971 Glycogen synthesis protein SH07_RS19410 PF07290 Protein of unknown function (DUF1449) SH07_RS19415 PF15975 Flotillin SH07_RS19415 PF01145 SPFH domain / Band 7 family SH07_RS19430 PF00294 pfkB family carbohydrate kinase SH07_RS19430 PF01467 Cytidylyltransferase-like SH07_RS19435 PF03710 Glutamate-ammonia ligase adenylyltransferase SH07_RS19435 PF08335 GlnD PII-uridylyltransferase SH07_RS19440 PF01928 CYTH domain SH07_RS19450 PF08239 Bacterial SH3 domain SH07_RS19455 PF01743 Poly A polymerase head domain SH07_RS19455 PF12627 Probable RNA and SrmB- binding site of polymerase A SH07_RS19455 PF01966 HD domain SH07_RS19460 PF02673 Bacitracin resistance protein BacA SH07_RS19465 PF02152 Dihydroneopterin aldolase SH07_RS19470 PF02660 Glycerol-3-phosphate acyltransferase SH07_RS19475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS19475 PF03466 LysR substrate binding domain SH07_RS19480 PF05681 Fumarate hydratase (Fumerase) SH07_RS19490 PF00939 Sodium:sulfate symporter transmembrane region SH07_RS19495 PF00814 Glycoprotease family SH07_RS19500 PF01165 Ribosomal protein S21 SH07_RS19505 PF08278 DNA primase DnaG DnaB-binding SH07_RS19505 PF01807 CHC2 zinc finger SH07_RS19505 PF10410 DnaB-helicase binding domain of primase SH07_RS19505 PF08275 DNA primase catalytic core, N-terminal domain SH07_RS19510 PF00140 Sigma-70 factor, region 1.2 SH07_RS19510 PF03979 Sigma-70 factor, region 1.1 SH07_RS19510 PF04546 Sigma-70, non-essential region SH07_RS19510 PF04542 Sigma-70 region 2 SH07_RS19510 PF04545 Sigma-70, region 4 SH07_RS19510 PF04539 Sigma-70 region 3 SH07_RS19515 PF03167 Uracil DNA glycosylase superfamily SH07_RS19525 PF04954 Siderophore-interacting protein SH07_RS19525 PF08021 Siderophore-interacting FAD-binding domain SH07_RS19530 PF03551 Transcriptional regulator PadR-like family SH07_RS19535 PF08447 PAS fold SH07_RS19535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH07_RS19540 PF00202 Aminotransferase class-III SH07_RS19545 PF01588 Putative tRNA binding domain SH07_RS19550 PF00356 Bacterial regulatory proteins, lacI family SH07_RS19555 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH07_RS19555 PF02929 Beta galactosidase small chain SH07_RS19555 PF16353 Domain of unknown function(DUF4981) SH07_RS19555 PF00703 Glycosyl hydrolases family 2 SH07_RS19555 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH07_RS19560 PF04074 YhcH/YjgK/YiaL SH07_RS19565 PF13520 Amino acid permease SH07_RS19575 PF01204 Trehalase SH07_RS19580 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH07_RS19580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SH07_RS19585 PF01381 Helix-turn-helix SH07_RS19590 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system SH07_RS19600 PF05175 Methyltransferase small domain SH07_RS19605 PF01863 Protein of unknown function DUF45 SH07_RS19610 PF02698 DUF218 domain SH07_RS19615 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH07_RS19620 PF03741 Integral membrane protein TerC family SH07_RS19625 PF00375 Sodium:dicarboxylate symporter family SH07_RS19630 PF10688 Bacterial inner membrane protein SH07_RS19635 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus SH07_RS19635 PF08666 SAF domain SH07_RS19640 PF02614 Glucuronate isomerase SH07_RS19645 PF07690 Major Facilitator Superfamily SH07_RS19650 PF07729 FCD domain SH07_RS19650 PF00392 Bacterial regulatory proteins, gntR family SH07_RS19655 PF09335 SNARE associated Golgi protein SH07_RS19660 PF13721 SecD export protein N-terminal TM region SH07_RS19665 PF06476 Protein of unknown function (DUF1090) SH07_RS19670 PF05957 Bacterial protein of unknown function (DUF883) SH07_RS19675 PF07332 Putative Actinobacterial Holin-X, holin superfamily III SH07_RS19680 PF13997 YqjK-like protein SH07_RS19685 PF07681 DoxX SH07_RS19690 PF13409 Glutathione S-transferase, N-terminal domain SH07_RS19695 PF05656 Protein of unknown function (DUF805) SH07_RS19700 PF05656 Protein of unknown function (DUF805) SH07_RS19705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS19705 PF03466 LysR substrate binding domain SH07_RS19710 PF02678 Pirin SH07_RS19710 PF17954 Quercetinase C-terminal cupin domain SH07_RS19720 PF03313 Serine dehydratase alpha chain SH07_RS19730 PF03315 Serine dehydratase beta chain SH07_RS19730 PF03313 Serine dehydratase alpha chain SH07_RS19735 PF01042 Endoribonuclease L-PSP SH07_RS19740 PF01228 Glycine radical SH07_RS19740 PF02901 Pyruvate formate lyase-like SH07_RS19750 PF05598 Transposase domain (DUF772) SH07_RS19750 PF01609 Transposase DDE domain SH07_RS19755 PF00871 Acetokinase family SH07_RS19760 PF03222 Tryptophan/tyrosine permease family SH07_RS19765 PF00291 Pyridoxal-phosphate dependent enzyme SH07_RS19770 PF03466 LysR substrate binding domain SH07_RS19770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS19790 PF02595 Glycerate kinase family SH07_RS19795 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH07_RS19795 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH07_RS19800 PF03328 HpcH/HpaI aldolase/citrate lyase family SH07_RS19805 PF07690 Major Facilitator Superfamily SH07_RS19810 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus SH07_RS19810 PF08666 SAF domain SH07_RS19815 PF15937 prlF antitoxin for toxin YhaV_toxin SH07_RS19820 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system SH07_RS19825 PF00455 DeoR C terminal sensor domain SH07_RS19825 PF08220 DeoR-like helix-turn-helix domain SH07_RS19830 PF08013 Tagatose 6 phosphate kinase SH07_RS19835 PF03830 PTS system sorbose subfamily IIB component SH07_RS19840 PF03609 PTS system sorbose-specific iic component SH07_RS19845 PF01979 Amidohydrolase family SH07_RS19850 PF01380 SIS domain SH07_RS19855 PF01116 Fructose-bisphosphate aldolase class-II SH07_RS19860 PF03830 PTS system sorbose subfamily IIB component SH07_RS19865 PF03609 PTS system sorbose-specific iic component SH07_RS19870 PF03613 PTS system mannose/fructose/sorbose family IID component SH07_RS19875 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH07_RS19880 PF00419 Fimbrial protein SH07_RS19885 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH07_RS19885 PF02753 Pili assembly chaperone PapD, C-terminal domain SH07_RS19890 PF13954 PapC N-terminal domain SH07_RS19890 PF00577 Outer membrane usher protein SH07_RS19890 PF13953 PapC C-terminal domain SH07_RS19895 PF00419 Fimbrial protein SH07_RS19900 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH07_RS19905 PF04348 LppC putative lipoprotein SH07_RS19910 PF02021 Uncharacterised protein family UPF0102 SH07_RS19915 PF13580 SIS domain SH07_RS19920 PF04972 BON domain SH07_RS19925 PF03773 Predicted permease SH07_RS19930 PF13460 NAD(P)H-binding SH07_RS19935 PF01965 DJ-1/PfpI family SH07_RS19945 PF01541 GIY-YIG catalytic domain SH07_RS19950 PF13508 Acetyltransferase (GNAT) domain SH07_RS19955 PF02036 SCP-2 sterol transfer family SH07_RS19960 PF01136 Peptidase family U32 SH07_RS19965 PF01136 Peptidase family U32 SH07_RS19970 PF00296 Luciferase-like monooxygenase SH07_RS19975 PF03222 Tryptophan/tyrosine permease family SH07_RS19985 PF03880 DbpA RNA binding domain SH07_RS19985 PF00270 DEAD/DEAH box helicase SH07_RS19985 PF12343 Cold shock protein DEAD box A SH07_RS19985 PF00271 Helicase conserved C-terminal domain SH07_RS19990 PF13181 Tetratricopeptide repeat SH07_RS19990 PF07719 Tetratricopeptide repeat SH07_RS19995 PF00575 S1 RNA binding domain SH07_RS19995 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SH07_RS19995 PF00013 KH domain SH07_RS19995 PF01138 3' exoribonuclease family, domain 1 SH07_RS19995 PF03725 3' exoribonuclease family, domain 2 SH07_RS20000 PF00312 Ribosomal protein S15 SH07_RS20005 PF01509 TruB family pseudouridylate synthase (N terminal domain) SH07_RS20005 PF16198 tRNA pseudouridylate synthase B C-terminal domain SH07_RS20005 PF09157 Pseudouridine synthase II TruB, C-terminal SH07_RS20010 PF02033 Ribosome-binding factor A SH07_RS20015 PF04760 Translation initiation factor IF-2, N-terminal region SH07_RS20015 PF08364 Bacterial translation initiation factor IF-2 associated region SH07_RS20015 PF11987 Translation-initiation factor 2 SH07_RS20015 PF00009 Elongation factor Tu GTP binding domain SH07_RS20020 PF08529 NusA N-terminal domain SH07_RS20020 PF00575 S1 RNA binding domain SH07_RS20020 PF13184 NusA-like KH domain SH07_RS20025 PF17384 RimP C-terminal SH3 domain SH07_RS20025 PF02576 RimP N-terminal domain SH07_RS20035 PF00764 Arginosuccinate synthase SH07_RS20040 PF00884 Sulfatase SH07_RS20050 PF03840 Preprotein translocase SecG subunit SH07_RS20055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH07_RS20055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH07_RS20055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH07_RS20055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH07_RS20060 PF00809 Pterin binding enzyme SH07_RS20065 PF17862 AAA+ lid domain SH07_RS20065 PF06480 FtsH Extracellular SH07_RS20065 PF01434 Peptidase family M41 SH07_RS20065 PF00004 ATPase family associated with various cellular activities (AAA) SH07_RS20070 PF01728 FtsJ-like methyltransferase SH07_RS20075 PF01985 CRS1 / YhbY (CRM) domain SH07_RS20080 PF03449 Transcription elongation factor, N-terminal SH07_RS20080 PF01272 Transcription elongation factor, GreA/GreB, C-term SH07_RS20085 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family SH07_RS20090 PF01926 50S ribosome-binding GTPase SH07_RS20090 PF01018 GTP1/OBG SH07_RS20095 PF00892 EamA-like transporter family SH07_RS20100 PF01016 Ribosomal L27 protein SH07_RS20105 PF00829 Ribosomal prokaryotic L21 protein SH07_RS20110 PF00348 Polyprenyl synthetase SH07_RS20115 PF13693 Winged helix-turn-helix DNA-binding SH07_RS20120 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SH07_RS20125 PF01722 BolA-like protein SH07_RS20130 PF13466 STAS domain SH07_RS20135 PF05494 MlaC protein SH07_RS20140 PF02470 MlaD protein SH07_RS20145 PF02405 Permease MlaE SH07_RS20150 PF00005 ABC transporter SH07_RS20155 PF01699 Sodium/calcium exchanger protein SH07_RS20160 PF01380 SIS domain SH07_RS20160 PF00571 CBS domain SH07_RS20170 PF06835 Lipopolysaccharide-assembly, LptC-related SH07_RS20175 PF03968 OstA-like protein SH07_RS20180 PF12399 Branched-chain amino acid ATP-binding cassette transporter SH07_RS20180 PF00005 ABC transporter SH07_RS20185 PF04552 Sigma-54, DNA binding domain SH07_RS20185 PF00309 Sigma-54 factor, Activator interacting domain (AID) SH07_RS20185 PF04963 Sigma-54 factor, core binding domain SH07_RS20190 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SH07_RS20195 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH07_RS20200 PF03668 P-loop ATPase protein family SH07_RS20205 PF00381 PTS HPr component phosphorylation site SH07_RS20210 PF10707 PhoP regulatory network protein YrbL SH07_RS20215 PF05598 Transposase domain (DUF772) SH07_RS20215 PF01609 Transposase DDE domain SH07_RS20225 PF06551 Protein of unknown function (DUF1120) SH07_RS20230 PF06250 YhcG PDDEXK nuclease domain SH07_RS20230 PF17761 DUF1016 N-terminal domain SH07_RS20235 PF04074 YhcH/YjgK/YiaL SH07_RS20240 PF00480 ROK family SH07_RS20245 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SH07_RS20250 PF07690 Major Facilitator Superfamily SH07_RS20255 PF00701 Dihydrodipicolinate synthetase family SH07_RS20260 PF07729 FCD domain SH07_RS20260 PF00392 Bacterial regulatory proteins, gntR family SH07_RS20265 PF03606 C4-dicarboxylate anaerobic carrier SH07_RS20270 PF04386 Stringent starvation protein B SH07_RS20275 PF02798 Glutathione S-transferase, N-terminal domain SH07_RS20275 PF00043 Glutathione S-transferase, C-terminal domain SH07_RS20280 PF00380 Ribosomal protein S9/S16 SH07_RS20285 PF00572 Ribosomal protein L13 SH07_RS20290 PF03969 AFG1-like ATPase SH07_RS20295 PF06295 Protein of unknown function (DUF1043) SH07_RS20300 PF00595 PDZ domain SH07_RS20300 PF13180 PDZ domain SH07_RS20305 PF13180 PDZ domain SH07_RS20310 PF00056 lactate/malate dehydrogenase, NAD binding domain SH07_RS20310 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SH07_RS20315 PF01316 Arginine repressor, DNA binding domain SH07_RS20315 PF02863 Arginine repressor, C-terminal domain SH07_RS20320 PF07338 Protein of unknown function (DUF1471) SH07_RS20325 PF01337 Barstar (barnase inhibitor) SH07_RS20330 PF04632 Fusaric acid resistance protein family SH07_RS20335 PF13533 Biotin-lipoyl like SH07_RS20340 PF07869 Protein of unknown function (DUF1656) SH07_RS20345 PF03466 LysR substrate binding domain SH07_RS20345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS20350 PF01523 Putative modulator of DNA gyrase SH07_RS20355 PF13502 AsmA-like C-terminal region SH07_RS20355 PF13116 Protein of unknown function SH07_RS20360 PF00575 S1 RNA binding domain SH07_RS20360 PF10150 Ribonuclease E/G family SH07_RS20365 PF02545 Maf-like protein SH07_RS20370 PF04093 rod shape-determining protein MreD SH07_RS20375 PF04085 rod shape-determining protein MreC SH07_RS20390 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS20390 PF00563 EAL domain SH07_RS20390 PF17157 Gammaproteobacterial periplasmic sensor domain SH07_RS20395 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS20395 PF00107 Zinc-binding dehydrogenase SH07_RS20410 PF01794 Ferric reductase like transmembrane component SH07_RS20415 PF00364 Biotin-requiring enzyme SH07_RS20420 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH07_RS20420 PF00289 Biotin carboxylase, N-terminal domain SH07_RS20420 PF02785 Biotin carboxylase C-terminal domain SH07_RS20425 PF06196 Protein of unknown function (DUF997) SH07_RS20430 PF00474 Sodium:solute symporter family SH07_RS20440 PF01207 Dihydrouridine synthase (Dus) SH07_RS20445 PF02954 Bacterial regulatory protein, Fis family SH07_RS20450 PF01555 DNA methylase SH07_RS20455 PF10831 Protein of unknown function (DUF2556) SH07_RS20460 PF00440 Bacterial regulatory proteins, tetR family SH07_RS20460 PF08361 MAATS-type transcriptional repressor, C-terminal region SH07_RS20465 PF00529 HlyD membrane-fusion protein of T1SS SH07_RS20465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH07_RS20470 PF00873 AcrB/AcrD/AcrF family SH07_RS20485 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH07_RS20490 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS20495 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS20500 PF00005 ABC transporter SH07_RS20540 PF00132 Bacterial transferase hexapeptide (six repeats) SH07_RS20545 PF07369 Protein of unknown function (DUF1488) SH07_RS20550 PF01488 Shikimate / quinate 5-dehydrogenase SH07_RS20550 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SH07_RS20550 PF08501 Shikimate dehydrogenase substrate binding domain SH07_RS20555 PF01300 Telomere recombination SH07_RS20560 PF01396 Topoisomerase DNA binding C4 zinc finger SH07_RS20565 PF04361 Protein of unknown function (DUF494) SH07_RS20570 PF17782 DprA winged helix domain SH07_RS20570 PF02481 DNA recombination-mediator protein A SH07_RS20575 PF01327 Polypeptide deformylase SH07_RS20580 PF02911 Formyl transferase, C-terminal domain SH07_RS20580 PF00551 Formyl transferase SH07_RS20585 PF01029 NusB family SH07_RS20585 PF01189 16S rRNA methyltransferase RsmB/F SH07_RS20590 PF02254 TrkA-N domain SH07_RS20590 PF02080 TrkA-C domain SH07_RS20595 PF01741 Large-conductance mechanosensitive channel, MscL SH07_RS20600 PF03889 Alternative ribosome-rescue factor A SH07_RS20605 PF13411 MerR HTH family regulatory protein SH07_RS20610 PF09350 Domain of unknown function (DUF1992) SH07_RS20615 PF01196 Ribosomal protein L17 SH07_RS20620 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SH07_RS20620 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SH07_RS20620 PF01000 RNA polymerase Rpb3/RpoA insert domain SH07_RS20625 PF00163 Ribosomal protein S4/S9 N-terminal domain SH07_RS20625 PF01479 S4 domain SH07_RS20630 PF00411 Ribosomal protein S11 SH07_RS20635 PF00416 Ribosomal protein S13/S18 SH07_RS20640 PF00444 Ribosomal protein L36 SH07_RS20645 PF00344 SecY translocase SH07_RS20650 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SH07_RS20655 PF00327 Ribosomal protein L30p/L7e SH07_RS20660 PF03719 Ribosomal protein S5, C-terminal domain SH07_RS20660 PF00333 Ribosomal protein S5, N-terminal domain SH07_RS20665 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SH07_RS20670 PF00347 Ribosomal protein L6 SH07_RS20675 PF00410 Ribosomal protein S8 SH07_RS20680 PF00253 Ribosomal protein S14p/S29e SH07_RS20685 PF00281 Ribosomal protein L5 SH07_RS20685 PF00673 ribosomal L5P family C-terminus SH07_RS20690 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SH07_RS20690 PF00467 KOW motif SH07_RS20695 PF00238 Ribosomal protein L14p/L23e SH07_RS20700 PF00366 Ribosomal protein S17 SH07_RS20705 PF00831 Ribosomal L29 protein SH07_RS20710 PF00252 Ribosomal protein L16p/L10e SH07_RS20715 PF00189 Ribosomal protein S3, C-terminal domain SH07_RS20715 PF07650 KH domain SH07_RS20720 PF00237 Ribosomal protein L22p/L17e SH07_RS20725 PF00203 Ribosomal protein S19 SH07_RS20730 PF00181 Ribosomal Proteins L2, RNA binding domain SH07_RS20730 PF03947 Ribosomal Proteins L2, C-terminal domain SH07_RS20735 PF00276 Ribosomal protein L23 SH07_RS20740 PF00573 Ribosomal protein L4/L1 family SH07_RS20745 PF00297 Ribosomal protein L3 SH07_RS20750 PF00338 Ribosomal protein S10p/S20e SH07_RS20760 PF13401 AAA domain SH07_RS20760 PF01471 Putative peptidoglycan binding domain SH07_RS20765 PF11356 Type II secretion system protein C SH07_RS20770 PF00263 Bacterial type II and III secretion system protein SH07_RS20770 PF03958 Bacterial type II/III secretion system short domain SH07_RS20775 PF00437 Type II/IV secretion system protein SH07_RS20780 PF00482 Type II secretion system (T2SS), protein F SH07_RS20785 PF07963 Prokaryotic N-terminal methylation motif SH07_RS20785 PF08334 Type II secretion system (T2SS), protein G SH07_RS20790 PF12019 Type II transport protein GspH SH07_RS20790 PF07963 Prokaryotic N-terminal methylation motif SH07_RS20795 PF02501 Type II secretion system (T2SS), protein I SH07_RS20795 PF07963 Prokaryotic N-terminal methylation motif SH07_RS20800 PF11612 Type II secretion system (T2SS), protein J SH07_RS20800 PF07963 Prokaryotic N-terminal methylation motif SH07_RS20805 PF03934 Type II secretion system (T2SS), protein K SH07_RS20810 PF12693 GspL periplasmic domain SH07_RS20810 PF05134 Type II secretion system (T2SS), protein L SH07_RS20815 PF04612 Type II secretion system (T2SS), protein M SH07_RS20820 PF01478 Type IV leader peptidase family SH07_RS20825 PF00210 Ferritin-like domain SH07_RS20830 PF04324 BFD-like [2Fe-2S] binding domain SH07_RS20835 PF02839 Carbohydrate binding domain SH07_RS20840 PF03143 Elongation factor Tu C-terminal domain SH07_RS20840 PF00009 Elongation factor Tu GTP binding domain SH07_RS20840 PF03144 Elongation factor Tu domain 2 SH07_RS20845 PF00009 Elongation factor Tu GTP binding domain SH07_RS20845 PF03764 Elongation factor G, domain IV SH07_RS20845 PF14492 Elongation Factor G, domain II SH07_RS20845 PF00679 Elongation factor G C-terminus SH07_RS20845 PF03144 Elongation factor Tu domain 2 SH07_RS20850 PF00177 Ribosomal protein S7p/S5e SH07_RS20855 PF00164 Ribosomal protein S12/S23 SH07_RS20860 PF04077 DsrH like protein SH07_RS20865 PF02635 DsrE/DsrF-like family SH07_RS20870 PF02635 DsrE/DsrF-like family SH07_RS20875 PF08348 YheO-like PAS domain SH07_RS20875 PF13309 HTH domain SH07_RS20880 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SH07_RS20880 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH07_RS20885 PF04102 SlyX SH07_RS20890 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH07_RS20895 PF09526 Probable metal-binding protein (DUF2387) SH07_RS20900 PF00999 Sodium/hydrogen exchanger family SH07_RS20900 PF02254 TrkA-N domain SH07_RS20905 PF02525 Flavodoxin-like fold SH07_RS20910 PF12848 ABC transporter SH07_RS20910 PF00005 ABC transporter SH07_RS20915 PF00561 alpha/beta hydrolase fold SH07_RS20920 PF06794 Uncharacterised protein family (UPF0270) SH07_RS20925 PF00485 Phosphoribulokinase / Uridine kinase family SH07_RS20930 PF02566 OsmC-like protein SH07_RS20940 PF00027 Cyclic nucleotide-binding domain SH07_RS20940 PF13545 Crp-like helix-turn-helix domain SH07_RS20945 PF12805 FUSC-like inner membrane protein yccS SH07_RS20950 PF00202 Aminotransferase class-III SH07_RS20955 PF00117 Glutamine amidotransferase class-I SH07_RS20960 PF02661 Fic/DOC family SH07_RS20965 PF10832 Protein of unknown function (DUF2559) SH07_RS20970 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SH07_RS20975 PF07690 Major Facilitator Superfamily SH07_RS20980 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SH07_RS20980 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SH07_RS20980 PF04324 BFD-like [2Fe-2S] binding domain SH07_RS20980 PF18267 Rubredoxin NAD+ reductase C-terminal domain SH07_RS20980 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH07_RS20985 PF13806 Rieske-like [2Fe-2S] domain SH07_RS20990 PF01226 Formate/nitrite transporter SH07_RS20995 PF10414 Sirohaem synthase dimerisation region SH07_RS20995 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH07_RS20995 PF14824 Sirohaem biosynthesis protein central SH07_RS21000 PF13978 Protein of unknown function (DUF4223) SH07_RS21005 PF13520 Amino acid permease SH07_RS21010 PF01380 SIS domain SH07_RS21015 PF01261 Xylose isomerase-like TIM barrel SH07_RS21020 PF00294 pfkB family carbohydrate kinase SH07_RS21025 PF00392 Bacterial regulatory proteins, gntR family SH07_RS21025 PF07702 UTRA domain SH07_RS21030 PF00155 Aminotransferase class I and II SH07_RS21035 PF10797 Protein of unknown function SH07_RS21040 PF10941 Protein of unknown function DUF2620 SH07_RS21045 PF02126 Phosphotriesterase family SH07_RS21050 PF01676 Metalloenzyme superfamily SH07_RS21055 PF01168 Alanine racemase, N-terminal domain SH07_RS21065 PF14503 YhfZ C-terminal domain SH07_RS21065 PF14502 Helix-turn-helix domain SH07_RS21070 PF00579 tRNA synthetases class I (W and Y) SH07_RS21075 PF13419 Haloacid dehalogenase-like hydrolase SH07_RS21080 PF00834 Ribulose-phosphate 3 epimerase family SH07_RS21085 PF02086 D12 class N6 adenine-specific DNA methyltransferase SH07_RS21090 PF05036 Sporulation related domain SH07_RS21095 PF01761 3-dehydroquinate synthase SH07_RS21100 PF01202 Shikimate kinase SH07_RS21105 PF03958 Bacterial type II/III secretion system short domain SH07_RS21105 PF00263 Bacterial type II and III secretion system protein SH07_RS21110 PF10748 DNA utilization proteins HofP SH07_RS21120 PF05137 Fimbrial assembly protein (PilN) SH07_RS21130 PF17092 Penicillin-binding protein OB-like domain SH07_RS21130 PF00912 Transglycosylase SH07_RS21130 PF00905 Penicillin binding protein transpeptidase domain SH07_RS21135 PF00293 NUDIX domain SH07_RS21140 PF07095 Intracellular growth attenuator protein IgaA SH07_RS21145 PF13419 Haloacid dehalogenase-like hydrolase SH07_RS21150 PF01479 S4 domain SH07_RS21155 PF01430 Hsp33 protein SH07_RS21160 PF13687 Domain of unknown function (DUF4153) SH07_RS21170 PF01293 Phosphoenolpyruvate carboxykinase SH07_RS21175 PF00512 His Kinase A (phospho-acceptor) domain SH07_RS21175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS21175 PF00672 HAMP domain SH07_RS21180 PF00486 Transcriptional regulatory protein, C terminal SH07_RS21180 PF00072 Response regulator receiver domain SH07_RS21185 PF03449 Transcription elongation factor, N-terminal SH07_RS21185 PF01272 Transcription elongation factor, GreA/GreB, C-term SH07_RS21190 PF09371 Tex-like protein N-terminal domain SH07_RS21190 PF16921 Tex protein YqgF-like domain SH07_RS21190 PF17674 HHH domain SH07_RS21190 PF00575 S1 RNA binding domain SH07_RS21195 PF04023 FeoA domain SH07_RS21200 PF17910 FeoB cytosolic helical domain SH07_RS21200 PF02421 Ferrous iron transport protein B SH07_RS21200 PF07664 Ferrous iron transport protein B C terminus SH07_RS21200 PF07670 Nucleoside recognition SH07_RS21205 PF09012 FeoC like transcriptional regulator SH07_RS21210 PF04754 Putative transposase, YhgA-like SH07_RS21215 PF00561 alpha/beta hydrolase fold SH07_RS21220 PF00156 Phosphoribosyl transferase domain SH07_RS21225 PF01106 NifU-like domain SH07_RS21225 PF01521 Iron-sulphur cluster biosynthesis SH07_RS21230 PF02447 GntP family permease SH07_RS21235 PF02446 4-alpha-glucanotransferase SH07_RS21240 PF00343 Carbohydrate phosphorylase SH07_RS21245 PF17874 MalT-like TPR region SH07_RS21245 PF00196 Bacterial regulatory proteins, luxR family SH07_RS21250 PF01137 RNA 3'-terminal phosphate cyclase SH07_RS21250 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain SH07_RS21255 PF01139 tRNA-splicing ligase RtcB SH07_RS21260 PF06956 Regulator of RNA terminal phosphate cyclase SH07_RS21260 PF00158 Sigma-54 interaction domain SH07_RS21265 PF00455 DeoR C terminal sensor domain SH07_RS21265 PF08220 DeoR-like helix-turn-helix domain SH07_RS21270 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease SH07_RS21270 PF01694 Rhomboid family SH07_RS21275 PF00581 Rhodanese-like domain SH07_RS21280 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SH07_RS21280 PF01266 FAD dependent oxidoreductase SH07_RS21290 PF00343 Carbohydrate phosphorylase SH07_RS21295 PF00534 Glycosyl transferases group 1 SH07_RS21295 PF08323 Starch synthase catalytic domain SH07_RS21300 PF00483 Nucleotidyl transferase SH07_RS21305 PF18390 Glycogen debranching enzyme C-terminal domain SH07_RS21305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH07_RS21305 PF00128 Alpha amylase, catalytic domain SH07_RS21310 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH07_RS21310 PF00128 Alpha amylase, catalytic domain SH07_RS21310 PF02806 Alpha amylase, C-terminal all-beta domain SH07_RS21315 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH07_RS21315 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH07_RS21320 PF01914 MarC family integral membrane protein SH07_RS21325 PF02447 GntP family permease SH07_RS21330 PF01202 Shikimate kinase SH07_RS21335 PF00356 Bacterial regulatory proteins, lacI family SH07_RS21335 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH07_RS21340 PF17954 Quercetinase C-terminal cupin domain SH07_RS21340 PF02678 Pirin SH07_RS21345 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH07_RS21345 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH07_RS21350 PF00583 Acetyltransferase (GNAT) family SH07_RS21355 PF05638 Type VI secretion system effector, Hcp SH07_RS21365 PF03400 IS1 transposase SH07_RS21370 PF15567 Immunity protein 35 SH07_RS21380 PF10956 Protein of unknown function (DUF2756) SH07_RS21385 PF03009 Glycerophosphoryl diester phosphodiesterase family SH07_RS21390 PF17912 MalK OB fold domain SH07_RS21390 PF00005 ABC transporter SH07_RS21395 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS21400 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS21405 PF13416 Bacterial extracellular solute-binding protein SH07_RS21415 PF00005 ABC transporter SH07_RS21420 PF00005 ABC transporter SH07_RS21420 PF12399 Branched-chain amino acid ATP-binding cassette transporter SH07_RS21425 PF02653 Branched-chain amino acid transport system / permease component SH07_RS21425 PF11862 Domain of unknown function (DUF3382) SH07_RS21430 PF02653 Branched-chain amino acid transport system / permease component SH07_RS21435 PF13458 Periplasmic binding protein SH07_RS21440 PF12568 Acetyltransferase (GNAT) domain, PanZ SH07_RS21450 PF13458 Periplasmic binding protein SH07_RS21455 PF04542 Sigma-70 region 2 SH07_RS21455 PF04545 Sigma-70, region 4 SH07_RS21460 PF18075 FtsX extracellular domain SH07_RS21460 PF02687 FtsX-like permease family SH07_RS21465 PF00005 ABC transporter SH07_RS21470 PF00448 SRP54-type protein, GTPase domain SH07_RS21470 PF02881 SRP54-type protein, helical bundle domain SH07_RS21480 PF06611 Protein of unknown function (DUF1145) SH07_RS21485 PF10694 Protein of unknown function (DUF2500) SH07_RS21490 PF07947 YhhN family SH07_RS21495 PF00403 Heavy-metal-associated domain SH07_RS21500 PF01206 Sulfurtransferase TusA SH07_RS21505 PF02592 Putative vitamin uptake transporter SH07_RS21510 PF08786 DcrB SH07_RS21515 PF07690 Major Facilitator Superfamily SH07_RS21520 PF01594 AI-2E family transporter SH07_RS21525 PF01648 4'-phosphopantetheinyl transferase superfamily SH07_RS21530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH07_RS21535 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS21540 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS21545 PF00005 ABC transporter SH07_RS21550 PF00005 ABC transporter SH07_RS21555 PF08753 NikR C terminal nickel binding domain SH07_RS21555 PF01402 Ribbon-helix-helix protein, copG family SH07_RS21560 PF03527 RHS protein SH07_RS21560 PF05593 RHS Repeat SH07_RS21560 PF14220 Domain of unknown function (DUF4329) SH07_RS21565 PF15631 NTF2 fold immunity protein SH07_RS21575 PF01609 Transposase DDE domain SH07_RS21575 PF13808 DDE_Tnp_1-associated SH07_RS21585 PF00005 ABC transporter SH07_RS21590 PF13533 Biotin-lipoyl like SH07_RS21595 PF13258 Domain of unknown function (DUF4049) SH07_RS21615 PF10951 Protein of unknown function (DUF2776) SH07_RS21625 PF01384 Phosphate transporter family SH07_RS21630 PF10625 Universal stress protein B (UspB) SH07_RS21635 PF00582 Universal stress protein family SH07_RS21640 PF00854 POT family SH07_RS21645 PF04445 Putative SAM-dependent methyltransferase SH07_RS21650 PF01432 Peptidase family M3 SH07_RS21655 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ SH07_RS21660 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH07_RS21660 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH07_RS21675 PF01022 Bacterial regulatory protein, arsR family SH07_RS21680 PF02040 Arsenical pump membrane protein SH07_RS21685 PF03960 ArsC family SH07_RS21695 PF05598 Transposase domain (DUF772) SH07_RS21695 PF01609 Transposase DDE domain SH07_RS21705 PF03843 Outer membrane lipoprotein Slp family SH07_RS21710 PF00196 Bacterial regulatory proteins, luxR family SH07_RS21715 PF02308 MgtC family SH07_RS21720 PF06411 HdeA/HdeB family SH07_RS21725 PF06411 HdeA/HdeB family SH07_RS21730 PF03729 Short repeat of unknown function (DUF308) SH07_RS21735 PF00196 Bacterial regulatory proteins, luxR family SH07_RS21745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH07_RS21745 PF00529 HlyD membrane-fusion protein of T1SS SH07_RS21750 PF00873 AcrB/AcrD/AcrF family SH07_RS21755 PF12833 Helix-turn-helix domain SH07_RS21760 PF12833 Helix-turn-helix domain SH07_RS21765 PF00282 Pyridoxal-dependent decarboxylase conserved domain SH07_RS21770 PF14376 Haem-binding domain SH07_RS21770 PF00034 Cytochrome c SH07_RS21770 PF03150 Di-haem cytochrome c peroxidase SH07_RS21775 PF01204 Trehalase SH07_RS21780 PF00196 Bacterial regulatory proteins, luxR family SH07_RS21785 PF03466 LysR substrate binding domain SH07_RS21785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS21790 PF03631 Virulence factor BrkB SH07_RS21795 PF00083 Sugar (and other) transporter SH07_RS21795 PF07690 Major Facilitator Superfamily SH07_RS21800 PF05170 AsmA family SH07_RS21805 PF00563 EAL domain SH07_RS21815 PF00294 pfkB family carbohydrate kinase SH07_RS21820 PF00675 Insulinase (Peptidase family M16) SH07_RS21820 PF05193 Peptidase M16 inactive domain SH07_RS21825 PF00375 Sodium:dicarboxylate symporter family SH07_RS21830 PF00563 EAL domain SH07_RS21830 PF17154 Gammaproteobacterial periplasmic sensor domain SH07_RS21830 PF00990 Diguanylate cyclase, GGDEF domain SH07_RS21830 PF00672 HAMP domain SH07_RS21835 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) SH07_RS21840 PF01270 Glycosyl hydrolases family 8 SH07_RS21845 PF03170 Bacterial cellulose synthase subunit SH07_RS21850 PF03552 Cellulose synthase SH07_RS21850 PF00535 Glycosyl transferase family 2 SH07_RS21850 PF07238 PilZ domain SH07_RS21855 PF06564 Cellulose biosynthesis protein BcsQ SH07_RS21860 PF10945 Cellulose biosynthesis protein BcsR SH07_RS21865 PF05598 Transposase domain (DUF772) SH07_RS21865 PF01609 Transposase DDE domain SH07_RS21870 PF10995 Cellulose biosynthesis GIL SH07_RS21875 PF11120 Cellulose biosynthesis protein BcsF SH07_RS21880 PF11658 Cellulose biosynthesis protein BcsG SH07_RS21885 PF13940 Toxin Ldr, type I toxin-antitoxin system SH07_RS21895 PF03222 Tryptophan/tyrosine permease family SH07_RS21900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH07_RS21900 PF00005 ABC transporter SH07_RS21905 PF00005 ABC transporter SH07_RS21905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH07_RS21910 PF12911 N-terminal TM domain of oligopeptide transport permease C SH07_RS21910 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS21915 PF00528 Binding-protein-dependent transport system inner membrane component SH07_RS21925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH07_RS21940 PF00884 Sulfatase SH07_RS21940 PF08019 Phosphoethanolamine transferase EptA/EptB SH07_RS21945 PF07690 Major Facilitator Superfamily SH07_RS21950 PF03797 Autotransporter beta-domain SH07_RS21955 PF03352 Methyladenine glycosylase SH07_RS21960 PF00583 Acetyltransferase (GNAT) family SH07_RS21965 PF18364 Molybdopterin oxidoreductase N-terminal domain SH07_RS21965 PF01568 Molydopterin dinucleotide binding domain SH07_RS21965 PF00384 Molybdopterin oxidoreductase SH07_RS21970 PF13488 Glycine zipper SH07_RS21970 PF00691 OmpA family SH07_RS21975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH07_RS21975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH07_RS21980 PF11254 Protein of unknown function (DUF3053) SH07_RS21985 PF01381 Helix-turn-helix SH07_RS21990 PF00313 'Cold-shock' DNA-binding domain SH07_RS21995 PF01848 Hok/gef family SH07_RS22005 PF00665 Integrase core domain SH07_RS22005 PF13333 Integrase core domain SH07_RS22005 PF13276 HTH-like domain SH07_RS22010 PF02092 Glycyl-tRNA synthetase beta subunit SH07_RS22010 PF05746 DALR anticodon binding domain SH07_RS22015 PF02091 Glycyl-tRNA synthetase alpha subunit SH07_RS22020 PF13983 YsaB-like lipoprotein SH07_RS22025 PF01757 Acyltransferase family SH07_RS22030 PF05360 yiaA/B two helix domain SH07_RS22035 PF05360 yiaA/B two helix domain SH07_RS22040 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH07_RS22040 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH07_RS22050 PF13407 Periplasmic binding protein domain SH07_RS22055 PF03400 IS1 transposase SH07_RS22060 PF13407 Periplasmic binding protein domain SH07_RS22065 PF00005 ABC transporter SH07_RS22070 PF02653 Branched-chain amino acid transport system / permease component SH07_RS22075 PF12833 Helix-turn-helix domain SH07_RS22080 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH07_RS22085 PF00128 Alpha amylase, catalytic domain SH07_RS22090 PF00155 Aminotransferase class I and II SH07_RS22100 PF13247 4Fe-4S dicluster domain SH07_RS22105 PF01614 Bacterial transcriptional regulator SH07_RS22105 PF09339 IclR helix-turn-helix domain SH07_RS22110 PF02615 Malate/L-lactate dehydrogenase SH07_RS22115 PF04074 YhcH/YjgK/YiaL SH07_RS22120 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SH07_RS22125 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SH07_RS22130 PF03480 Bacterial extracellular solute-binding protein, family 7 SH07_RS22135 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH07_RS22135 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH07_RS22140 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH07_RS22145 PF01261 Xylose isomerase-like TIM barrel SH07_RS22150 PF00596 Class II Aldolase and Adducin N-terminal domain SH07_RS22155 PF06629 MltA-interacting protein MipA SH07_RS22160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH07_RS22160 PF03466 LysR substrate binding domain SH07_RS22165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH07_RS22165 PF00529 HlyD membrane-fusion protein of T1SS SH07_RS22170 PF11742 Protein of unknown function (DUF3302) SH07_RS22180 PF00171 Aldehyde dehydrogenase family SH07_RS22185 PF00465 Iron-containing alcohol dehydrogenase SH07_RS22190 PF03144 Elongation factor Tu domain 2 SH07_RS22190 PF09106 Elongation factor SelB, winged helix SH07_RS22190 PF09107 Elongation factor SelB, winged helix SH07_RS22190 PF00009 Elongation factor Tu GTP binding domain SH07_RS22195 PF03841 L-seryl-tRNA selenium transferase SH07_RS22195 PF12390 Selenocysteine synthase N terminal SH07_RS22200 PF13417 Glutathione S-transferase, N-terminal domain SH07_RS22200 PF00043 Glutathione S-transferase, C-terminal domain SH07_RS22205 PF15606 Bacterial toxin 34 SH07_RS22205 PF05593 RHS Repeat SH07_RS22205 PF03527 RHS protein SH07_RS22210 PF03130 PBS lyase HEAT-like repeat SH07_RS22215 PF03527 RHS protein SH07_RS22230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH07_RS22230 PF00529 HlyD membrane-fusion protein of T1SS SH07_RS22235 PF11742 Protein of unknown function (DUF3302) SH07_RS22245 PF01232 Mannitol dehydrogenase Rossmann domain SH07_RS22245 PF08125 Mannitol dehydrogenase C-terminal domain SH07_RS22250 PF05068 Mannitol repressor SH07_RS22260 PF10928 Protein of unknown function (DUF2810) SH07_RS22265 PF02652 L-lactate permease SH07_RS22270 PF00392 Bacterial regulatory proteins, gntR family SH07_RS22270 PF07729 FCD domain SH07_RS22275 PF01070 FMN-dependent dehydrogenase SH07_RS22280 PF00588 SpoU rRNA Methylase family SH07_RS22285 PF00132 Bacterial transferase hexapeptide (six repeats) SH07_RS22285 PF06426 Serine acetyltransferase, N-terminal SH07_RS22290 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SH07_RS22290 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SH07_RS22295 PF02556 Preprotein translocase subunit SecB SH07_RS22300 PF00462 Glutaredoxin SH07_RS22305 PF00581 Rhodanese-like domain SH07_RS22315 PF01676 Metalloenzyme superfamily SH07_RS22315 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SH07_RS22320 PF01551 Peptidase family M23 SH07_RS22325 PF04748 Divergent polysaccharide deacetylase SH07_RS22330 PF00535 Glycosyl transferase family 2 SH07_RS22335 PF00107 Zinc-binding dehydrogenase SH07_RS22335 PF08240 Alcohol dehydrogenase GroES-like domain SH07_RS22340 PF00155 Aminotransferase class I and II SH07_RS22345 PF09612 Bacterial protein of unknown function (HtrL_YibB) SH07_RS22350 PF01370 NAD dependent epimerase/dehydratase family SH07_RS22355 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH07_RS22360 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH07_RS22365 PF04932 O-Antigen ligase SH07_RS22370 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH07_RS22380 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) SH07_RS22385 PF01501 Glycosyl transferase family 8 SH07_RS22385 PF08437 Glycosyl transferase family 8 C-terminal SH07_RS22390 PF01501 Glycosyl transferase family 8 SH07_RS22390 PF08437 Glycosyl transferase family 8 C-terminal SH07_RS22395 PF00534 Glycosyl transferases group 1 SH07_RS22395 PF13439 Glycosyltransferase Family 4 SH07_RS22410 PF00534 Glycosyl transferases group 1 SH07_RS22410 PF13439 Glycosyltransferase Family 4 SH07_RS22415 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH07_RS22420 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SH07_RS22425 PF01467 Cytidylyltransferase-like SH07_RS22430 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SH07_RS22430 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SH07_RS22430 PF06827 Zinc finger found in FPG and IleRS SH07_RS22435 PF00471 Ribosomal protein L33 SH07_RS22440 PF00830 Ribosomal L28 family SH07_RS22445 PF04002 RadC-like JAB domain SH07_RS22450 PF02441 Flavoprotein SH07_RS22450 PF04127 DNA / pantothenate metabolism flavoprotein SH07_RS22455 PF00692 dUTPase SH07_RS22460 PF00440 Bacterial regulatory proteins, tetR family SH07_RS22465 PF00156 Phosphoribosyl transferase domain SH07_RS22470 PF03725 3' exoribonuclease family, domain 2 SH07_RS22470 PF01138 3' exoribonuclease family, domain 1 SH07_RS22475 PF08340 Domain of unknown function (DUF1732) SH07_RS22475 PF03755 YicC-like family, N-terminal region SH07_RS22485 PF03458 UPF0126 domain SH07_RS22490 PF01653 NAD-dependent DNA ligase adenylation domain SH07_RS22490 PF03120 NAD-dependent DNA ligase OB-fold domain SH07_RS22495 PF00625 Guanylate kinase SH07_RS22500 PF01192 RNA polymerase Rpb6 SH07_RS22505 PF04607 Region found in RelA / SpoT proteins SH07_RS22505 PF02824 TGS domain SH07_RS22505 PF13291 ACT domain SH07_RS22510 PF12105 SpoU, rRNA methylase, C-terminal SH07_RS22510 PF00588 SpoU rRNA Methylase family SH07_RS22515 PF17191 RecG wedge domain SH07_RS22515 PF00271 Helicase conserved C-terminal domain SH07_RS22515 PF00270 DEAD/DEAH box helicase SH07_RS22520 PF03616 Sodium/glutamate symporter SH07_RS22525 PF00860 Permease family SH07_RS22530 PF05170 AsmA family SH07_RS22535 PF13802 Galactose mutarotase-like SH07_RS22535 PF01055 Glycosyl hydrolases family 31 SH07_RS22555 PF07690 Major Facilitator Superfamily SH07_RS22560 PF00892 EamA-like transporter family SH07_RS22565 PF03180 NLPA lipoprotein SH07_RS22580 PF07690 Major Facilitator Superfamily SH07_RS22585 PF06711 Protein of unknown function (DUF1198) SH07_RS22590 PF00860 Permease family SH07_RS22595 PF13382 Adenine deaminase C-terminal domain SH07_RS22595 PF01979 Amidohydrolase family SH07_RS22600 PF07690 Major Facilitator Superfamily SH07_RS22605 PF07690 Major Facilitator Superfamily SH07_RS22610 PF05231 MASE1 SH07_RS22610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS22610 PF07730 Histidine kinase SH07_RS22615 PF00196 Bacterial regulatory proteins, luxR family SH07_RS22615 PF00072 Response regulator receiver domain SH07_RS22620 PF01842 ACT domain SH07_RS22625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH07_RS22625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH07_RS22625 PF00205 Thiamine pyrophosphate enzyme, central domain SH07_RS22630 PF08049 IlvB leader peptide SH07_RS22645 PF13939 Toxin TisB, type I toxin-antitoxin system SH07_RS22650 PF07690 Major Facilitator Superfamily SH07_RS22660 PF02656 Domain of unknown function (DUF202) SH07_RS22665 PF02656 Domain of unknown function (DUF202) SH07_RS22675 PF16347 Domain of unknown function (DUF4976) SH07_RS22675 PF00884 Sulfatase SH07_RS22680 PF00474 Sodium:solute symporter family SH07_RS22685 PF02311 AraC-like ligand binding domain SH07_RS22685 PF12833 Helix-turn-helix domain SH07_RS22690 PF02056 Family 4 glycosyl hydrolase SH07_RS22695 PF00367 phosphotransferase system, EIIB SH07_RS22700 PF02378 Phosphotransferase system, EIIC SH07_RS22705 PF07702 UTRA domain SH07_RS22705 PF00392 Bacterial regulatory proteins, gntR family SH07_RS22710 PF06826 Predicted Permease Membrane Region SH07_RS22710 PF02080 TrkA-C domain SH07_RS22715 PF00011 Hsp20/alpha crystallin family SH07_RS22720 PF00011 Hsp20/alpha crystallin family SH07_RS22725 PF07119 Protein of unknown function (DUF1375) SH07_RS22730 PF12566 Protein of unknown function (DUF3748) SH07_RS22730 PF07676 WD40-like Beta Propeller Repeat SH07_RS22735 PF01494 FAD binding domain SH07_RS22740 PF07690 Major Facilitator Superfamily SH07_RS22745 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH07_RS22745 PF13378 Enolase C-terminal domain-like SH07_RS22750 PF01081 KDPG and KHG aldolase SH07_RS22755 PF05035 2-keto-3-deoxy-galactonokinase SH07_RS22760 PF07729 FCD domain SH07_RS22760 PF00392 Bacterial regulatory proteins, gntR family SH07_RS22775 PF06078 Bacterial protein of unknown function (DUF937) SH07_RS22785 PF01751 Toprim domain SH07_RS22785 PF00986 DNA gyrase B subunit, carboxyl terminus SH07_RS22785 PF00204 DNA gyrase B SH07_RS22785 PF18053 DNA gyrase B subunit insert domain SH07_RS22785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH07_RS22790 PF02463 RecF/RecN/SMC N terminal domain SH07_RS22795 PF00712 DNA polymerase III beta subunit, N-terminal domain SH07_RS22795 PF02768 DNA polymerase III beta subunit, C-terminal domain SH07_RS22795 PF02767 DNA polymerase III beta subunit, central domain SH07_RS22800 PF08299 Bacterial dnaA protein helix-turn-helix SH07_RS22800 PF11638 DnaA N-terminal domain SH07_RS22800 PF00308 Bacterial dnaA protein SH07_RS22860 PF03400 IS1 transposase SH07_RS22870 PF07151 Protein of unknown function (DUF1391) SH07_RS22880 PF00871 Acetokinase family