SH07_RS00015 SM01234 SH07_RS00015 SH07_RS00110 SM01061 CAT RNA binding domain SH07_RS00120 SM00382 ATPases associated with a variety of cellular activities SH07_RS00160 SM00382 ATPases associated with a variety of cellular activities SH07_RS00205 SM01228 SH07_RS00205 SH07_RS00215 SM00344 helix_turn_helix ASNC type SH07_RS00225 SM00327 von Willebrand factor (vWF) type A domain SH07_RS00230 SM00382 ATPases associated with a variety of cellular activities SH07_RS00245 SM00382 ATPases associated with a variety of cellular activities SH07_RS00265 SM00354 helix_turn _helix lactose operon repressor SH07_RS00275 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS00275 SM00895 SH07_RS00275 SH07_RS00320 SM00382 ATPases associated with a variety of cellular activities SH07_RS00385 SM00487 DEAD-like helicases superfamily SH07_RS00385 SM00490 helicase superfamily c-terminal domain SH07_RS00400 SM00357 Cold shock protein domain SH07_RS00400 SM00382 ATPases associated with a variety of cellular activities SH07_RS00400 SM00959 Rho termination factor, N-terminal domain SH07_RS00425 SM00984 UDP binding domain SH07_RS00530 SM01219 SH07_RS00530 SH07_RS00605 SM00341 Helicase and RNase D C-terminal SH07_RS00605 SM00487 DEAD-like helicases superfamily SH07_RS00605 SM00490 helicase superfamily c-terminal domain SH07_RS00605 SM00956 SH07_RS00605 SH07_RS00695 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SH07_RS00795 SM00563 Phosphate acyltransferases SH07_RS00805 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH07_RS00805 SM00474 3'-5' exonuclease SH07_RS00805 SM00475 5'-3' exonuclease SH07_RS00805 SM00482 DNA polymerase A domain SH07_RS00820 SM00729 Elongator protein 3, MiaB family, Radical SAM SH07_RS00830 SM00382 ATPases associated with a variety of cellular activities SH07_RS00830 SM00448 cheY-homologous receiver domain SH07_RS00835 SM00091 PAS domain SH07_RS00835 SM00387 Histidine kinase-like ATPases SH07_RS00835 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS00840 SM01230 SH07_RS00840 SH07_RS00855 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS00855 SM00866 SH07_RS00855 SH07_RS00900 SM01133 SH07_RS00900 SH07_RS00915 SM00420 helix_turn_helix, Deoxyribose operon repressor SH07_RS00915 SM01134 SH07_RS00915 SH07_RS00975 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS01015 SM01007 Class II Aldolase and Adducin N-terminal domain SH07_RS01035 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS01040 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS01070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS01070 SM00387 Histidine kinase-like ATPases SH07_RS01070 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS01075 SM00448 cheY-homologous receiver domain SH07_RS01075 SM00862 Transcriptional regulatory protein, C terminal SH07_RS01165 SM00382 ATPases associated with a variety of cellular activities SH07_RS01165 SM01086 C-terminal, D2-small domain, of ClpB protein SH07_RS01180 SM00354 helix_turn _helix lactose operon repressor SH07_RS01185 SM00487 DEAD-like helicases superfamily SH07_RS01185 SM00490 helicase superfamily c-terminal domain SH07_RS01285 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS01310 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH07_RS01430 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SH07_RS01430 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH07_RS01435 SM00649 Ribosomal protein L11/L12 SH07_RS01460 SM00663 RNA polymerase I subunit A N-terminus SH07_RS01470 SM00876 Biotin and Thiamin Synthesis associated domain SH07_RS01525 SM00411 bacterial (prokaryotic) histone like domain SH07_RS01540 SM00387 Histidine kinase-like ATPases SH07_RS01540 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS01545 SM00382 ATPases associated with a variety of cellular activities SH07_RS01545 SM00448 cheY-homologous receiver domain SH07_RS01550 SM01209 SH07_RS01550 SH07_RS01550 SM01210 SH07_RS01550 SH07_RS01555 SM00798 AICARFT/IMPCHase bienzyme SH07_RS01555 SM00851 MGS-like domain SH07_RS01620 SM00248 ankyrin repeats SH07_RS01625 SM00346 helix_turn_helix isocitrate lyase regulation SH07_RS01630 SM01018 B12 binding domain SH07_RS01645 SM00363 S4 RNA-binding domain SH07_RS01735 SM00382 ATPases associated with a variety of cellular activities SH07_RS01770 SM00563 Phosphate acyltransferases SH07_RS01820 SM00829 Enoylreductase SH07_RS01825 SM00382 ATPases associated with a variety of cellular activities SH07_RS01830 SM01005 Alanine racemase, C-terminal domain SH07_RS01875 SM00052 Putative diguanylate phosphodiesterase SH07_RS01880 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS01885 SM00422 helix_turn_helix, mercury resistance SH07_RS01950 SM00028 Tetratricopeptide repeats SH07_RS01960 SM00671 Sel1-like repeats. SH07_RS01970 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS01995 SM00849 Metallo-beta-lactamase superfamily SH07_RS02015 SM00382 ATPases associated with a variety of cellular activities SH07_RS02050 SM00072 Guanylate kinase homologues. SH07_RS02060 SM00382 ATPases associated with a variety of cellular activities SH07_RS02065 SM00382 ATPases associated with a variety of cellular activities SH07_RS02090 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS02090 SM00866 SH07_RS02090 SH07_RS02105 SM00382 ATPases associated with a variety of cellular activities SH07_RS02140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS02140 SM00387 Histidine kinase-like ATPases SH07_RS02140 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS02145 SM00448 cheY-homologous receiver domain SH07_RS02145 SM00862 Transcriptional regulatory protein, C terminal SH07_RS02160 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS02170 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS02210 SM00448 cheY-homologous receiver domain SH07_RS02215 SM00091 PAS domain SH07_RS02215 SM00387 Histidine kinase-like ATPases SH07_RS02260 SM00862 Transcriptional regulatory protein, C terminal SH07_RS02305 SM00883 Chaperonin 10 Kd subunit SH07_RS02330 SM00841 Elongation factor P, C-terminal SH07_RS02330 SM01185 SH07_RS02330 SH07_RS02415 SM00479 SH07_RS02415 SH07_RS02450 SM00646 SH07_RS02450 SH07_RS02455 SM00853 MutL C terminal dimerisation domain SH07_RS02455 SM01340 SH07_RS02455 SH07_RS02475 SM00244 prohibitin homologues SH07_RS02480 SM00244 prohibitin homologues SH07_RS02490 SM00788 Adenylosuccinate synthetase SH07_RS02500 SM00316 Ribosomal protein S1-like RNA-binding domain SH07_RS02500 SM00357 Cold shock protein domain SH07_RS02500 SM00955 SH07_RS02500 SH07_RS02505 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH07_RS02560 SM00420 helix_turn_helix, Deoxyribose operon repressor SH07_RS02560 SM01134 SH07_RS02560 SH07_RS02585 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH07_RS02595 SM01007 Class II Aldolase and Adducin N-terminal domain SH07_RS02700 SM01091 Transporter associated domain SH07_RS02730 SM00966 SpoVT / AbrB like domain SH07_RS02750 SM00382 ATPases associated with a variety of cellular activities SH07_RS02800 SM00642 Alpha-amylase domain SH07_RS02810 SM00354 helix_turn _helix lactose operon repressor SH07_RS02815 SM00831 Cation transporter/ATPase, N-terminus SH07_RS02850 SM00822 SH07_RS02850 SH07_RS02920 SM00354 helix_turn _helix lactose operon repressor SH07_RS02945 SM00829 Enoylreductase SH07_RS03050 SM00382 ATPases associated with a variety of cellular activities SH07_RS03070 SM00965 Secretin and TonB N terminus short domain SH07_RS03120 SM01130 SH07_RS03120 SH07_RS03125 SM00346 helix_turn_helix isocitrate lyase regulation SH07_RS03130 SM00420 helix_turn_helix, Deoxyribose operon repressor SH07_RS03130 SM01134 SH07_RS03130 SH07_RS03300 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS03300 SM00895 SH07_RS03300 SH07_RS03390 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS03415 SM00382 ATPases associated with a variety of cellular activities SH07_RS03435 SM00487 DEAD-like helicases superfamily SH07_RS03435 SM00490 helicase superfamily c-terminal domain SH07_RS03455 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH07_RS03475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH07_RS03475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS03475 SM00319 Homologues of the ligand binding domain of Tar SH07_RS03485 SM00895 SH07_RS03485 SH07_RS03490 SM00829 Enoylreductase SH07_RS03505 SM00382 ATPases associated with a variety of cellular activities SH07_RS03525 SM00421 helix_turn_helix, Lux Regulon SH07_RS03530 SM00421 helix_turn_helix, Lux Regulon SH07_RS03585 SM00749 bacterial OsmY and nodulation domain SH07_RS03620 SM01133 SH07_RS03620 SH07_RS03625 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SH07_RS03660 SM00382 ATPases associated with a variety of cellular activities SH07_RS03665 SM00530 Helix-turn-helix XRE-family like proteins SH07_RS03675 SM00382 ATPases associated with a variety of cellular activities SH07_RS03695 SM00855 Phosphoglycerate mutase family SH07_RS03700 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS03700 SM00871 Bacterial transcription activator, effector binding domain SH07_RS03710 SM00448 cheY-homologous receiver domain SH07_RS03710 SM00862 Transcriptional regulatory protein, C terminal SH07_RS03715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS03715 SM00387 Histidine kinase-like ATPases SH07_RS03715 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS03725 SM00448 cheY-homologous receiver domain SH07_RS03725 SM00862 Transcriptional regulatory protein, C terminal SH07_RS03785 SM00852 Probable molybdopterin binding domain SH07_RS03810 SM00271 DnaJ molecular chaperone homology domain SH07_RS03850 SM00904 Riboflavin kinase SH07_RS03895 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SH07_RS03900 SM00851 MGS-like domain SH07_RS03900 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SH07_RS03945 SM00893 Electron transfer flavoprotein domain SH07_RS03950 SM00893 Electron transfer flavoprotein domain SH07_RS03995 SM00650 Ribosomal RNA adenine dimethylases SH07_RS04015 SM00271 DnaJ molecular chaperone homology domain SH07_RS04030 SM00487 DEAD-like helicases superfamily SH07_RS04030 SM00490 helicase superfamily c-terminal domain SH07_RS04035 SM00486 DNA polymerase type-B family SH07_RS04040 SM01007 Class II Aldolase and Adducin N-terminal domain SH07_RS04055 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS04065 SM00382 ATPases associated with a variety of cellular activities SH07_RS04105 SM01329 SH07_RS04105 SH07_RS04110 SM00917 LeuA allosteric (dimerisation) domain SH07_RS04140 SM00354 helix_turn _helix lactose operon repressor SH07_RS04210 SM00842 Cell division protein FtsA SH07_RS04215 SM00864 Tubulin/FtsZ family, GTPase domain SH07_RS04215 SM00865 Tubulin/FtsZ family, C-terminal domain SH07_RS04230 SM00957 SecA DEAD-like domain SH07_RS04230 SM00958 SecA preprotein cross-linking domain SH07_RS04260 SM01240 SH07_RS04260 SH07_RS04290 SM00644 SH07_RS04290 SH07_RS04305 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS04305 SM00895 SH07_RS04305 SH07_RS04360 SM00564 beta-propeller repeat SH07_RS04370 SM00947 Carbonic anhydrase SH07_RS04375 SM00382 ATPases associated with a variety of cellular activities SH07_RS04480 SM00487 DEAD-like helicases superfamily SH07_RS04480 SM00490 helicase superfamily c-terminal domain SH07_RS04480 SM00847 Helicase associated domain (HA2) Add an annotation SH07_RS04500 SM00382 ATPases associated with a variety of cellular activities SH07_RS04545 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH07_RS04550 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH07_RS04575 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH07_RS04620 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH07_RS04630 SM00935 Outer membrane protein (OmpH-like) SH07_RS04660 SM00481 DNA polymerase alpha chain like domain SH07_RS04680 SM00977 TilS substrate C-terminal domain SH07_RS04695 SM01322 SH07_RS04695 SH07_RS04740 SM00382 ATPases associated with a variety of cellular activities SH07_RS04740 SM00930 SH07_RS04740 SH07_RS04800 SM00257 Lysin motif SH07_RS04805 SM00849 Metallo-beta-lactamase superfamily SH07_RS04820 SM00479 SH07_RS04820 SH07_RS04895 SM01321 SH07_RS04895 SH07_RS04965 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SH07_RS05080 SM00382 ATPases associated with a variety of cellular activities SH07_RS05115 SM01130 SH07_RS05115 SH07_RS05135 SM00346 helix_turn_helix isocitrate lyase regulation SH07_RS05200 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH07_RS05205 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH07_RS05250 SM00421 helix_turn_helix, Lux Regulon SH07_RS05290 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS05310 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS05365 SM00052 Putative diguanylate phosphodiesterase SH07_RS05365 SM00421 helix_turn_helix, Lux Regulon SH07_RS05380 SM00248 ankyrin repeats SH07_RS05415 SM00829 Enoylreductase SH07_RS05440 SM00382 ATPases associated with a variety of cellular activities SH07_RS05480 SM00947 Carbonic anhydrase SH07_RS05485 SM01116 SH07_RS05485 SH07_RS05495 SM01266 SH07_RS05495 SH07_RS05505 SM01038 Beta galactosidase small chain SH07_RS05515 SM00346 helix_turn_helix isocitrate lyase regulation SH07_RS05540 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH07_RS05565 SM00829 Enoylreductase SH07_RS05605 SM00062 Bacterial periplasmic substrate-binding proteins SH07_RS05610 SM00382 ATPases associated with a variety of cellular activities SH07_RS05625 SM01004 Delta-aminolevulinic acid dehydratase SH07_RS05650 SM00869 Autotransporter beta-domain SH07_RS05705 SM00098 Alkaline phosphatase homologues SH07_RS05715 SM00267 diguanylate cyclase SH07_RS05785 SM00448 cheY-homologous receiver domain SH07_RS05785 SM00862 Transcriptional regulatory protein, C terminal SH07_RS05790 SM00091 PAS domain SH07_RS05790 SM00387 Histidine kinase-like ATPases SH07_RS05790 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS05805 SM00642 Alpha-amylase domain SH07_RS05825 SM01323 SH07_RS05825 SH07_RS05840 SM00507 HNH nucleases SH07_RS05895 SM00861 Transketolase, pyrimidine binding domain SH07_RS05910 SM00981 SH07_RS05910 SH07_RS05990 SM00382 ATPases associated with a variety of cellular activities SH07_RS05990 SM00994 ClpX C4-type zinc finger SH07_RS05990 SM01086 C-terminal, D2-small domain, of ClpB protein SH07_RS05995 SM00382 ATPases associated with a variety of cellular activities SH07_RS05995 SM00464 Found in ATP-dependent protease La (LON) SH07_RS06000 SM00411 bacterial (prokaryotic) histone like domain SH07_RS06010 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH07_RS06035 SM00344 helix_turn_helix ASNC type SH07_RS06040 SM00382 ATPases associated with a variety of cellular activities SH07_RS06045 SM00382 ATPases associated with a variety of cellular activities SH07_RS06050 SM00938 Nitrogen regulatory protein P-II SH07_RS06080 SM00052 Putative diguanylate phosphodiesterase SH07_RS06090 SM01266 SH07_RS06090 SH07_RS06150 SM00382 ATPases associated with a variety of cellular activities SH07_RS06160 SM00493 SH07_RS06160 SH07_RS06165 SM00387 Histidine kinase-like ATPases SH07_RS06215 SM00530 Helix-turn-helix XRE-family like proteins SH07_RS06235 SM00422 helix_turn_helix, mercury resistance SH07_RS06245 SM00244 prohibitin homologues SH07_RS06250 SM00382 ATPases associated with a variety of cellular activities SH07_RS06265 SM00822 SH07_RS06265 SH07_RS06275 SM00382 ATPases associated with a variety of cellular activities SH07_RS06310 SM00450 Rhodanese Homology Domain SH07_RS06325 SM00346 helix_turn_helix isocitrate lyase regulation SH07_RS06405 SM01001 AIR carboxylase SH07_RS06420 SM00840 SH07_RS06420 SH07_RS06465 SM00421 helix_turn_helix, Lux Regulon SH07_RS06465 SM00448 cheY-homologous receiver domain SH07_RS06520 SM00857 Resolvase, N terminal domain SH07_RS06530 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS06645 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS06660 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS06670 SM00028 Tetratricopeptide repeats SH07_RS06680 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS06680 SM00387 Histidine kinase-like ATPases SH07_RS06680 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS06685 SM00448 cheY-homologous receiver domain SH07_RS06685 SM00862 Transcriptional regulatory protein, C terminal SH07_RS06770 SM00923 MbtH-like protein SH07_RS06775 SM00823 Phosphopantetheine attachment site SH07_RS06775 SM00824 Thioesterase SH07_RS06785 SM00382 ATPases associated with a variety of cellular activities SH07_RS06825 SM00822 SH07_RS06825 SH07_RS06855 SM00470 ParB-like nuclease domain SH07_RS06940 SM00764 Citrate lyase ligase C-terminal domain SH07_RS06945 SM00091 PAS domain SH07_RS06945 SM00387 Histidine kinase-like ATPases SH07_RS06950 SM00448 cheY-homologous receiver domain SH07_RS06965 SM00357 Cold shock protein domain SH07_RS06985 SM00729 Elongator protein 3, MiaB family, Radical SAM SH07_RS07010 SM00936 Penicillin-binding protein 5, C-terminal domain SH07_RS07040 SM00855 Phosphoglycerate mutase family SH07_RS07070 SM00671 Sel1-like repeats. SH07_RS07080 SM00271 DnaJ molecular chaperone homology domain SH07_RS07085 SM00671 Sel1-like repeats. SH07_RS07110 SM00382 ATPases associated with a variety of cellular activities SH07_RS07125 SM00062 Bacterial periplasmic substrate-binding proteins SH07_RS07140 SM00116 Domain in cystathionine beta-synthase and other proteins. SH07_RS07140 SM01091 Transporter associated domain SH07_RS07155 SM00729 Elongator protein 3, MiaB family, Radical SAM SH07_RS07315 SM00448 cheY-homologous receiver domain SH07_RS07315 SM00862 Transcriptional regulatory protein, C terminal SH07_RS07320 SM00387 Histidine kinase-like ATPases SH07_RS07320 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS07405 SM00796 Allophanate hydrolase subunit 1 SH07_RS07410 SM00797 Allophanate hydrolase subunit 2 SH07_RS07420 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SH07_RS07420 SM01232 SH07_RS07420 SH07_RS07485 SM00861 Transketolase, pyrimidine binding domain SH07_RS07500 SM00881 CoA binding domain SH07_RS07505 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS07505 SM00866 SH07_RS07505 SH07_RS07515 SM00872 Alpha mannosidase, middle domain SH07_RS07645 SM00855 Phosphoglycerate mutase family SH07_RS07670 SM00382 ATPases associated with a variety of cellular activities SH07_RS07695 SM00382 ATPases associated with a variety of cellular activities SH07_RS07745 SM00729 Elongator protein 3, MiaB family, Radical SAM SH07_RS07745 SM00876 Biotin and Thiamin Synthesis associated domain SH07_RS07765 SM00487 DEAD-like helicases superfamily SH07_RS07765 SM00490 helicase superfamily c-terminal domain SH07_RS07780 SM00729 Elongator protein 3, MiaB family, Radical SAM SH07_RS07785 SM00852 Probable molybdopterin binding domain SH07_RS07820 SM00155 Phospholipase D. Active site motifs. SH07_RS07845 SM00382 ATPases associated with a variety of cellular activities SH07_RS07860 SM00487 DEAD-like helicases superfamily SH07_RS07860 SM00490 helicase superfamily c-terminal domain SH07_RS07870 SM00487 DEAD-like helicases superfamily SH07_RS07870 SM00488 SH07_RS07870 SH07_RS07870 SM00491 SH07_RS07870 SH07_RS07895 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. SH07_RS07920 SM00382 ATPases associated with a variety of cellular activities SH07_RS07930 SM00062 Bacterial periplasmic substrate-binding proteins SH07_RS07930 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH07_RS07965 SM00529 Helix-turn-helix diphteria tox regulatory element SH07_RS07980 SM00382 ATPases associated with a variety of cellular activities SH07_RS08015 SM00852 Probable molybdopterin binding domain SH07_RS08025 SM00382 ATPases associated with a variety of cellular activities SH07_RS08045 SM00052 Putative diguanylate phosphodiesterase SH07_RS08050 SM00267 diguanylate cyclase SH07_RS08055 SM00729 Elongator protein 3, MiaB family, Radical SAM SH07_RS08075 SM00936 Penicillin-binding protein 5, C-terminal domain SH07_RS08080 SM00420 helix_turn_helix, Deoxyribose operon repressor SH07_RS08080 SM01134 SH07_RS08080 SH07_RS08085 SM00014 Acid phosphatase homologues SH07_RS08160 SM00382 ATPases associated with a variety of cellular activities SH07_RS08185 SM00062 Bacterial periplasmic substrate-binding proteins SH07_RS08185 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH07_RS08200 SM00062 Bacterial periplasmic substrate-binding proteins SH07_RS08200 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH07_RS08205 SM00382 ATPases associated with a variety of cellular activities SH07_RS08220 SM00644 SH07_RS08220 SH07_RS08285 SM00382 ATPases associated with a variety of cellular activities SH07_RS08290 SM00357 Cold shock protein domain SH07_RS08300 SM00382 ATPases associated with a variety of cellular activities SH07_RS08300 SM01086 C-terminal, D2-small domain, of ClpB protein SH07_RS08310 SM00316 Ribosomal protein S1-like RNA-binding domain SH07_RS08320 SM00382 ATPases associated with a variety of cellular activities SH07_RS08325 SM00382 ATPases associated with a variety of cellular activities SH07_RS08335 SM00344 helix_turn_helix ASNC type SH07_RS08340 SM00843 SH07_RS08340 SH07_RS08350 SM00382 ATPases associated with a variety of cellular activities SH07_RS08360 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS08445 SM00316 Ribosomal protein S1-like RNA-binding domain SH07_RS08450 SM00411 bacterial (prokaryotic) histone like domain SH07_RS08455 SM00849 Metallo-beta-lactamase superfamily SH07_RS08460 SM00382 ATPases associated with a variety of cellular activities SH07_RS08525 SM00849 Metallo-beta-lactamase superfamily SH07_RS08560 SM00382 ATPases associated with a variety of cellular activities SH07_RS08575 SM00062 Bacterial periplasmic substrate-binding proteins SH07_RS08635 SM00981 SH07_RS08635 SH07_RS08640 SM00382 ATPases associated with a variety of cellular activities SH07_RS08715 SM00851 MGS-like domain SH07_RS08730 SM00881 CoA binding domain SH07_RS08735 SM00992 Hemimethylated DNA-binding protein YccV like SH07_RS08740 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SH07_RS08820 SM00226 Low molecular weight phosphatase family SH07_RS08860 SM00357 Cold shock protein domain SH07_RS08865 SM00357 Cold shock protein domain SH07_RS08885 SM00073 Histidine Phosphotransfer domain SH07_RS08885 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS08885 SM00387 Histidine kinase-like ATPases SH07_RS08885 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS08885 SM00448 cheY-homologous receiver domain SH07_RS08895 SM00448 cheY-homologous receiver domain SH07_RS08895 SM00862 Transcriptional regulatory protein, C terminal SH07_RS08920 SM00271 DnaJ molecular chaperone homology domain SH07_RS08960 SM00903 Flavin reductase like domain SH07_RS09055 SM00028 Tetratricopeptide repeats SH07_RS09060 SM00267 diguanylate cyclase SH07_RS09100 SM00481 DNA polymerase alpha chain like domain SH07_RS09130 SM00421 helix_turn_helix, Lux Regulon SH07_RS09160 SM00506 Appr-1"-p processing enzyme SH07_RS09165 SM00155 Phospholipase D. Active site motifs. SH07_RS09220 SM00450 Rhodanese Homology Domain SH07_RS09225 SM00867 YceI-like domain SH07_RS09305 SM00858 SH07_RS09305 SH07_RS09350 SM00047 Lysozyme subfamily 2 SH07_RS09365 SM00316 Ribosomal protein S1-like RNA-binding domain SH07_RS09375 SM00363 S4 RNA-binding domain SH07_RS09405 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SH07_RS09410 SM00822 SH07_RS09410 SH07_RS09420 SM00825 Beta-ketoacyl synthase SH07_RS09510 SM00257 Lysin motif SH07_RS09515 SM00487 DEAD-like helicases superfamily SH07_RS09515 SM00490 helicase superfamily c-terminal domain SH07_RS09515 SM00982 SH07_RS09515 SH07_RS09515 SM01058 CarD-like/TRCF domain SH07_RS09530 SM00382 ATPases associated with a variety of cellular activities SH07_RS09575 SM00382 ATPases associated with a variety of cellular activities SH07_RS09590 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. SH07_RS09595 SM00387 Histidine kinase-like ATPases SH07_RS09600 SM00448 cheY-homologous receiver domain SH07_RS09600 SM00862 Transcriptional regulatory protein, C terminal SH07_RS09630 SM01329 SH07_RS09630 SH07_RS09650 SM00422 helix_turn_helix, mercury resistance SH07_RS09655 SM00052 Putative diguanylate phosphodiesterase SH07_RS09655 SM01034 Sensors of blue-light using FAD SH07_RS09680 SM00052 Putative diguanylate phosphodiesterase SH07_RS09795 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS09810 SM01005 Alanine racemase, C-terminal domain SH07_RS09815 SM01091 Transporter associated domain SH07_RS09855 SM01120 SH07_RS09855 SH07_RS09865 SM00091 PAS domain SH07_RS09865 SM00382 ATPases associated with a variety of cellular activities SH07_RS09870 SM00869 Autotransporter beta-domain SH07_RS09900 SM01400 SH07_RS09900 SH07_RS09920 SM00937 SH07_RS09920 SH07_RS09980 SM00421 helix_turn_helix, Lux Regulon SH07_RS09980 SM00448 cheY-homologous receiver domain SH07_RS09985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS09985 SM00387 Histidine kinase-like ATPases SH07_RS10000 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS10050 SM00448 cheY-homologous receiver domain SH07_RS10060 SM00528 Domain in histone-like proteins of HNS family SH07_RS10105 SM00382 ATPases associated with a variety of cellular activities SH07_RS10110 SM00382 ATPases associated with a variety of cellular activities SH07_RS10120 SM00155 Phospholipase D. Active site motifs. SH07_RS10205 SM00481 DNA polymerase alpha chain like domain SH07_RS10220 SM00363 S4 RNA-binding domain SH07_RS10230 SM00822 SH07_RS10230 SH07_RS10255 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH07_RS10255 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH07_RS10255 SM00493 SH07_RS10255 SH07_RS10290 SM00014 Acid phosphatase homologues SH07_RS10300 SM00028 Tetratricopeptide repeats SH07_RS10305 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH07_RS10320 SM00420 helix_turn_helix, Deoxyribose operon repressor SH07_RS10320 SM01134 SH07_RS10320 SH07_RS10330 SM00052 Putative diguanylate phosphodiesterase SH07_RS10330 SM00091 PAS domain SH07_RS10330 SM00267 diguanylate cyclase SH07_RS10340 SM00357 Cold shock protein domain SH07_RS10340 SM00955 SH07_RS10340 SH07_RS10360 SM00382 ATPases associated with a variety of cellular activities SH07_RS10365 SM00382 ATPases associated with a variety of cellular activities SH07_RS10400 SM01230 SH07_RS10400 SH07_RS10410 SM00530 Helix-turn-helix XRE-family like proteins SH07_RS10430 SM00382 ATPases associated with a variety of cellular activities SH07_RS10455 SM00450 Rhodanese Homology Domain SH07_RS10460 SM00642 Alpha-amylase domain SH07_RS10515 SM00354 helix_turn _helix lactose operon repressor SH07_RS10530 SM00091 PAS domain SH07_RS10530 SM00382 ATPases associated with a variety of cellular activities SH07_RS10540 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH07_RS10595 SM00100 Cyclic nucleotide-monophosphate binding domain SH07_RS10595 SM00419 helix_turn_helix, cAMP Regulatory protein SH07_RS10635 SM00463 Small MutS-related domain SH07_RS10640 SM00091 PAS domain SH07_RS10640 SM00267 diguanylate cyclase SH07_RS10655 SM00487 DEAD-like helicases superfamily SH07_RS10655 SM00490 helicase superfamily c-terminal domain SH07_RS10755 SM00470 ParB-like nuclease domain SH07_RS10810 SM00857 Resolvase, N terminal domain SH07_RS10830 SM00890 Domain of unknown function SH07_RS10865 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS11000 SM00195 Dual specificity phosphatase, catalytic domain SH07_RS11000 SM00404 Protein tyrosine phosphatase, catalytic domain motif SH07_RS11010 SM00382 ATPases associated with a variety of cellular activities SH07_RS11010 SM00487 DEAD-like helicases superfamily SH07_RS11010 SM00490 helicase superfamily c-terminal domain SH07_RS11010 SM00847 Helicase associated domain (HA2) Add an annotation SH07_RS11055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH07_RS11055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS11055 SM00319 Homologues of the ligand binding domain of Tar SH07_RS11065 SM01150 SH07_RS11065 SH07_RS11115 SM01321 SH07_RS11115 SH07_RS11130 SM00530 Helix-turn-helix XRE-family like proteins SH07_RS11150 SM00530 Helix-turn-helix XRE-family like proteins SH07_RS11155 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS11165 SM00382 ATPases associated with a variety of cellular activities SH07_RS11210 SM00829 Enoylreductase SH07_RS11215 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS11215 SM00895 SH07_RS11215 SH07_RS11270 SM00903 Flavin reductase like domain SH07_RS11300 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS11325 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS11345 SM00530 Helix-turn-helix XRE-family like proteins SH07_RS11350 SM00829 Enoylreductase SH07_RS11355 SM00919 Malic enzyme, NAD binding domain SH07_RS11355 SM01274 SH07_RS11355 SH07_RS11375 SM00382 ATPases associated with a variety of cellular activities SH07_RS11380 SM00382 ATPases associated with a variety of cellular activities SH07_RS11405 SM00052 Putative diguanylate phosphodiesterase SH07_RS11405 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH07_RS11405 SM00091 PAS domain SH07_RS11405 SM00267 diguanylate cyclase SH07_RS11410 SM00267 diguanylate cyclase SH07_RS11445 SM00382 ATPases associated with a variety of cellular activities SH07_RS11460 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS11505 SM00530 Helix-turn-helix XRE-family like proteins SH07_RS11510 SM00869 Autotransporter beta-domain SH07_RS11530 SM00382 ATPases associated with a variety of cellular activities SH07_RS11550 SM01133 SH07_RS11550 SH07_RS11580 SM00267 diguanylate cyclase SH07_RS11620 SM00347 helix_turn_helix multiple antibiotic resistance protein SH07_RS11625 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS11650 SM00267 diguanylate cyclase SH07_RS11675 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS11675 SM00895 SH07_RS11675 SH07_RS11700 SM00857 Resolvase, N terminal domain SH07_RS11740 SM00357 Cold shock protein domain SH07_RS11765 SM00357 Cold shock protein domain SH07_RS11770 SM00357 Cold shock protein domain SH07_RS11780 SM00507 HNH nucleases SH07_RS11825 SM00530 Helix-turn-helix XRE-family like proteins SH07_RS11875 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH07_RS11905 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS11910 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS11990 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SH07_RS11990 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SH07_RS12015 SM00448 cheY-homologous receiver domain SH07_RS12015 SM00862 Transcriptional regulatory protein, C terminal SH07_RS12020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS12020 SM00387 Histidine kinase-like ATPases SH07_RS12020 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS12075 SM00354 helix_turn _helix lactose operon repressor SH07_RS12135 SM00900 SH07_RS12135 SH07_RS12145 SM00478 endonuclease III SH07_RS12145 SM00525 SH07_RS12145 SH07_RS12170 SM00363 S4 RNA-binding domain SH07_RS12195 SM00347 helix_turn_helix multiple antibiotic resistance protein SH07_RS12245 SM00479 SH07_RS12245 SH07_RS12250 SM00382 ATPases associated with a variety of cellular activities SH07_RS12250 SM00487 DEAD-like helicases superfamily SH07_RS12250 SM00490 helicase superfamily c-terminal domain SH07_RS12280 SM00354 helix_turn _helix lactose operon repressor SH07_RS12355 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain SH07_RS12380 SM00257 Lysin motif SH07_RS12400 SM00382 ATPases associated with a variety of cellular activities SH07_RS12460 SM00882 Coenzyme A transferase SH07_RS12470 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS12480 SM00893 Electron transfer flavoprotein domain SH07_RS12485 SM00893 Electron transfer flavoprotein domain SH07_RS12560 SM00411 bacterial (prokaryotic) histone like domain SH07_RS12565 SM00873 B3/4 domain SH07_RS12565 SM00874 tRNA synthetase B5 domain SH07_RS12565 SM00896 Ferredoxin-fold anticodon binding domain SH07_RS12595 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH07_RS12660 SM01060 SH07_RS12660 SH07_RS12675 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS12710 SM00465 GIY-YIG type nucleases (URI domain) SH07_RS12785 SM00382 ATPases associated with a variety of cellular activities SH07_RS12790 SM00450 Rhodanese Homology Domain SH07_RS12810 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SH07_RS12820 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH07_RS12820 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH07_RS12820 SM00493 SH07_RS12820 SH07_RS12850 SM00870 SH07_RS12850 SH07_RS12865 SM00420 helix_turn_helix, Deoxyribose operon repressor SH07_RS12865 SM01134 SH07_RS12865 SH07_RS12885 SM00829 Enoylreductase SH07_RS12910 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH07_RS12930 SM00763 PrkA AAA domain SH07_RS12940 SM00267 diguanylate cyclase SH07_RS12945 SM00267 diguanylate cyclase SH07_RS12965 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS12985 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH07_RS12985 SM00267 diguanylate cyclase SH07_RS13020 SM01329 SH07_RS13020 SH07_RS13040 SM00341 Helicase and RNase D C-terminal SH07_RS13040 SM00474 3'-5' exonuclease SH07_RS13060 SM00487 DEAD-like helicases superfamily SH07_RS13060 SM00491 SH07_RS13060 SH07_RS13095 SM00052 Putative diguanylate phosphodiesterase SH07_RS13100 SM01091 Transporter associated domain SH07_RS13145 SM00357 Cold shock protein domain SH07_RS13175 SM00346 helix_turn_helix isocitrate lyase regulation SH07_RS13190 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH07_RS13190 SM00245 tail specific protease SH07_RS13195 SM00945 ProQ/FINO family SH07_RS13200 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH07_RS13265 SM00479 SH07_RS13265 SH07_RS13335 SM00257 Lysin motif SH07_RS13345 SM00382 ATPases associated with a variety of cellular activities SH07_RS13355 SM00382 ATPases associated with a variety of cellular activities SH07_RS13360 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH07_RS13435 SM00836 DALR anticodon binding domain SH07_RS13435 SM01016 Arginyl tRNA synthetase N terminal dom SH07_RS13465 SM00448 cheY-homologous receiver domain SH07_RS13470 SM00448 cheY-homologous receiver domain SH07_RS13475 SM00138 Methyltransferase, chemotaxis proteins SH07_RS13480 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH07_RS13480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS13480 SM00319 Homologues of the ligand binding domain of Tar SH07_RS13485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH07_RS13485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS13485 SM00319 Homologues of the ligand binding domain of Tar SH07_RS13490 SM00260 Two component signalling adaptor domain SH07_RS13495 SM00073 Histidine Phosphotransfer domain SH07_RS13495 SM00260 Two component signalling adaptor domain SH07_RS13495 SM00387 Histidine kinase-like ATPases SH07_RS13495 SM01231 SH07_RS13495 SH07_RS13540 SM00382 ATPases associated with a variety of cellular activities SH07_RS13610 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH07_RS13610 SM00465 GIY-YIG type nucleases (URI domain) SH07_RS13615 SM00421 helix_turn_helix, Lux Regulon SH07_RS13615 SM00448 cheY-homologous receiver domain SH07_RS13630 SM00421 helix_turn_helix, Lux Regulon SH07_RS13635 SM00382 ATPases associated with a variety of cellular activities SH07_RS13650 SM00062 Bacterial periplasmic substrate-binding proteins SH07_RS13650 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH07_RS13685 SM00642 Alpha-amylase domain SH07_RS13750 SM00382 ATPases associated with a variety of cellular activities SH07_RS13800 SM00421 helix_turn_helix, Lux Regulon SH07_RS13820 SM00267 diguanylate cyclase SH07_RS13850 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH07_RS13880 SM00387 Histidine kinase-like ATPases SH07_RS13880 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS13885 SM00448 cheY-homologous receiver domain SH07_RS13885 SM00862 Transcriptional regulatory protein, C terminal SH07_RS13890 SM00095 Transthyretin SH07_RS13935 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins SH07_RS13935 SM00634 Bacterial Ig-like domain (group 1) SH07_RS14045 SM00869 Autotransporter beta-domain SH07_RS14100 SM00871 Bacterial transcription activator, effector binding domain SH07_RS14105 SM00936 Penicillin-binding protein 5, C-terminal domain SH07_RS14110 SM00479 SH07_RS14110 SH07_RS14195 SM00984 UDP binding domain SH07_RS14200 SM01350 SH07_RS14200 SH07_RS14360 SM00226 Low molecular weight phosphatase family SH07_RS14370 SM00116 Domain in cystathionine beta-synthase and other proteins. SH07_RS14370 SM01091 Transporter associated domain SH07_RS14390 SM00052 Putative diguanylate phosphodiesterase SH07_RS14390 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH07_RS14390 SM00091 PAS domain SH07_RS14390 SM00267 diguanylate cyclase SH07_RS14395 SM00478 endonuclease III SH07_RS14395 SM01009 AlkA N-terminal domain SH07_RS14425 SM00327 von Willebrand factor (vWF) type A domain SH07_RS14450 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS14450 SM00387 Histidine kinase-like ATPases SH07_RS14450 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS14455 SM00448 cheY-homologous receiver domain SH07_RS14455 SM00862 Transcriptional regulatory protein, C terminal SH07_RS14485 SM00046 Diacylglycerol kinase catalytic domain (presumed) SH07_RS14490 SM01134 SH07_RS14490 SH07_RS14505 SM00420 helix_turn_helix, Deoxyribose operon repressor SH07_RS14510 SM00829 Enoylreductase SH07_RS14540 SM01133 SH07_RS14540 SH07_RS14560 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS14560 SM00866 SH07_RS14560 SH07_RS14565 SM00641 Glycosyl hydrolases family 25 SH07_RS14635 SM00773 Proposed nucleic acid binding domain SH07_RS14655 SM00382 ATPases associated with a variety of cellular activities SH07_RS14665 SM00327 von Willebrand factor (vWF) type A domain SH07_RS14685 SM00448 cheY-homologous receiver domain SH07_RS14685 SM00850 LytTr DNA-binding domain SH07_RS14690 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH07_RS14695 SM00422 helix_turn_helix, mercury resistance SH07_RS14710 SM00382 ATPases associated with a variety of cellular activities SH07_RS14725 SM01217 SH07_RS14725 SH07_RS14825 SM00354 helix_turn _helix lactose operon repressor SH07_RS14875 SM00518 AP endonuclease family 2 SH07_RS14895 SM00100 Cyclic nucleotide-monophosphate binding domain SH07_RS14940 SM00841 Elongation factor P, C-terminal SH07_RS14940 SM01185 SH07_RS14940 SH07_RS14950 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH07_RS14955 SM00014 Acid phosphatase homologues SH07_RS14965 SM00052 Putative diguanylate phosphodiesterase SH07_RS14985 SM00382 ATPases associated with a variety of cellular activities SH07_RS15000 SM00363 S4 RNA-binding domain SH07_RS15005 SM00487 DEAD-like helicases superfamily SH07_RS15005 SM00490 helicase superfamily c-terminal domain SH07_RS15035 SM00869 Autotransporter beta-domain SH07_RS15050 SM00421 helix_turn_helix, Lux Regulon SH07_RS15050 SM00448 cheY-homologous receiver domain SH07_RS15090 SM00382 ATPases associated with a variety of cellular activities SH07_RS15115 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS15145 SM00382 ATPases associated with a variety of cellular activities SH07_RS15155 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS15180 SM00387 Histidine kinase-like ATPases SH07_RS15185 SM00421 helix_turn_helix, Lux Regulon SH07_RS15185 SM00448 cheY-homologous receiver domain SH07_RS15190 SM00387 Histidine kinase-like ATPases SH07_RS15190 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS15190 SM00448 cheY-homologous receiver domain SH07_RS15195 SM00091 PAS domain SH07_RS15195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS15195 SM00387 Histidine kinase-like ATPases SH07_RS15195 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS15200 SM00382 ATPases associated with a variety of cellular activities SH07_RS15200 SM00448 cheY-homologous receiver domain SH07_RS15205 SM00882 Coenzyme A transferase SH07_RS15210 SM00882 Coenzyme A transferase SH07_RS15240 SM01359 SH07_RS15240 SH07_RS15240 SM01360 SH07_RS15240 SH07_RS15255 SM00434 DNA Topoisomerase IV SH07_RS15265 SM00869 Autotransporter beta-domain SH07_RS15350 SM00346 helix_turn_helix isocitrate lyase regulation SH07_RS15355 SM00852 Probable molybdopterin binding domain SH07_RS15420 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH07_RS15455 SM00849 Metallo-beta-lactamase superfamily SH07_RS15465 SM00327 von Willebrand factor (vWF) type A domain SH07_RS15530 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH07_RS15530 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SH07_RS15535 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SH07_RS15570 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH07_RS15635 SM00905 Dihydroneopterin aldolase SH07_RS15650 SM00382 ATPases associated with a variety of cellular activities SH07_RS15665 SM00062 Bacterial periplasmic substrate-binding proteins SH07_RS15670 SM00062 Bacterial periplasmic substrate-binding proteins SH07_RS15715 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH07_RS15735 SM00825 Beta-ketoacyl synthase SH07_RS15775 SM00463 Small MutS-related domain SH07_RS15970 SM00421 helix_turn_helix, Lux Regulon SH07_RS15970 SM00448 cheY-homologous receiver domain SH07_RS15975 SM00062 Bacterial periplasmic substrate-binding proteins SH07_RS15975 SM00073 Histidine Phosphotransfer domain SH07_RS15975 SM00387 Histidine kinase-like ATPases SH07_RS15975 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS15975 SM00448 cheY-homologous receiver domain SH07_RS16030 SM00387 Histidine kinase-like ATPases SH07_RS16035 SM00448 cheY-homologous receiver domain SH07_RS16035 SM00850 LytTr DNA-binding domain SH07_RS16040 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS16105 SM00052 Putative diguanylate phosphodiesterase SH07_RS16105 SM00267 diguanylate cyclase SH07_RS16195 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH07_RS16195 SM00292 breast cancer carboxy-terminal domain SH07_RS16195 SM00532 Ligase N family SH07_RS16200 SM00771 ZipA, C-terminal domain (FtsZ-binding) SH07_RS16240 SM00773 Proposed nucleic acid binding domain SH07_RS16250 SM00382 ATPases associated with a variety of cellular activities SH07_RS16270 SM00822 SH07_RS16270 SH07_RS16315 SM00646 SH07_RS16315 SH07_RS16325 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS16330 SM00877 SH07_RS16330 SH07_RS16335 SM00877 SH07_RS16335 SH07_RS16380 SM00877 SH07_RS16380 SH07_RS16405 SM00877 SH07_RS16405 SH07_RS16410 SM00919 Malic enzyme, NAD binding domain SH07_RS16410 SM01274 SH07_RS16410 SH07_RS16420 SM00861 Transketolase, pyrimidine binding domain SH07_RS16440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS16440 SM00387 Histidine kinase-like ATPases SH07_RS16500 SM01130 SH07_RS16500 SH07_RS16565 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH07_RS16565 SM00382 ATPases associated with a variety of cellular activities SH07_RS16625 SM00052 Putative diguanylate phosphodiesterase SH07_RS16625 SM00267 diguanylate cyclase SH07_RS16655 SM00116 Domain in cystathionine beta-synthase and other proteins. SH07_RS16655 SM01240 SH07_RS16655 SH07_RS16675 SM00564 beta-propeller repeat SH07_RS16695 SM00530 Helix-turn-helix XRE-family like proteins SH07_RS16705 SM00562 SH07_RS16705 SH07_RS16715 SM01359 SH07_RS16715 SH07_RS16715 SM01360 SH07_RS16715 SH07_RS16720 SM00450 Rhodanese Homology Domain SH07_RS16750 SM00271 DnaJ molecular chaperone homology domain SH07_RS16840 SM00829 Enoylreductase SH07_RS16850 SM00382 ATPases associated with a variety of cellular activities SH07_RS16860 SM00028 Tetratricopeptide repeats SH07_RS16880 SM00938 Nitrogen regulatory protein P-II SH07_RS16885 SM00382 ATPases associated with a variety of cellular activities SH07_RS16885 SM00448 cheY-homologous receiver domain SH07_RS16895 SM00387 Histidine kinase-like ATPases SH07_RS16895 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS16900 SM01211 SH07_RS16900 SH07_RS16905 SM00062 Bacterial periplasmic substrate-binding proteins SH07_RS16965 SM00358 Double-stranded RNA binding motif SH07_RS16965 SM00535 Ribonuclease III family SH07_RS17015 SM00487 DEAD-like helicases superfamily SH07_RS17015 SM00490 helicase superfamily c-terminal domain SH07_RS17040 SM00986 Uracil DNA glycosylase superfamily SH07_RS17040 SM00987 UreE urease accessory protein, C-terminal domain SH07_RS17045 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH07_RS17060 SM01144 SH07_RS17060 SH07_RS17065 SM00881 CoA binding domain SH07_RS17070 SM00155 Phospholipase D. Active site motifs. SH07_RS17110 SM00382 ATPases associated with a variety of cellular activities SH07_RS17110 SM01086 C-terminal, D2-small domain, of ClpB protein SH07_RS17120 SM00363 S4 RNA-binding domain SH07_RS17140 SM00830 Chorismate mutase type II SH07_RS17145 SM00830 Chorismate mutase type II SH07_RS17165 SM00267 diguanylate cyclase SH07_RS17195 SM00382 ATPases associated with a variety of cellular activities SH07_RS17195 SM00962 SRP54-type protein, GTPase domain SH07_RS17195 SM00963 SRP54-type protein, helical bundle domain SH07_RS17205 SM01091 Transporter associated domain SH07_RS17275 SM00487 DEAD-like helicases superfamily SH07_RS17275 SM00490 helicase superfamily c-terminal domain SH07_RS17440 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS17440 SM00895 SH07_RS17440 SH07_RS17445 SM00257 Lysin motif SH07_RS17445 SM00749 bacterial OsmY and nodulation domain SH07_RS17455 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH07_RS17460 SM00450 Rhodanese Homology Domain SH07_RS17465 SM00528 Domain in histone-like proteins of HNS family SH07_RS17505 SM00382 ATPases associated with a variety of cellular activities SH07_RS17535 SM00347 helix_turn_helix multiple antibiotic resistance protein SH07_RS17605 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH07_RS17630 SM01059 Chloramphenicol acetyltransferase SH07_RS17670 SM00420 helix_turn_helix, Deoxyribose operon repressor SH07_RS17670 SM01134 SH07_RS17670 SH07_RS17680 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH07_RS17680 SM00382 ATPases associated with a variety of cellular activities SH07_RS17685 SM00849 Metallo-beta-lactamase superfamily SH07_RS17705 SM00354 helix_turn _helix lactose operon repressor SH07_RS17795 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH07_RS17795 SM00382 ATPases associated with a variety of cellular activities SH07_RS17805 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SH07_RS17805 SM00534 ATPase domain of DNA mismatch repair MUTS family SH07_RS17815 SM00420 helix_turn_helix, Deoxyribose operon repressor SH07_RS17815 SM01134 SH07_RS17815 SH07_RS17830 SM01007 Class II Aldolase and Adducin N-terminal domain SH07_RS17850 SM00257 Lysin motif SH07_RS17920 SM01101 SH07_RS17920 SH07_RS17945 SM00487 DEAD-like helicases superfamily SH07_RS17945 SM00490 helicase superfamily c-terminal domain SH07_RS17990 SM00893 Electron transfer flavoprotein domain SH07_RS18035 SM01192 SH07_RS18035 SH07_RS18035 SM01193 SH07_RS18035 SH07_RS18055 SM00966 SpoVT / AbrB like domain SH07_RS18060 SM00954 Region found in RelA / SpoT proteins SH07_RS18070 SM00073 Histidine Phosphotransfer domain SH07_RS18070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS18070 SM00387 Histidine kinase-like ATPases SH07_RS18070 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS18070 SM00448 cheY-homologous receiver domain SH07_RS18075 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH07_RS18080 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH07_RS18135 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH07_RS18135 SM00475 5'-3' exonuclease SH07_RS18145 SM01007 Class II Aldolase and Adducin N-terminal domain SH07_RS18170 SM00420 helix_turn_helix, Deoxyribose operon repressor SH07_RS18170 SM01134 SH07_RS18170 SH07_RS18210 SM00925 MltA specific insert domain SH07_RS18230 SM00646 SH07_RS18230 SH07_RS18290 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH07_RS18310 SM00927 DNA mismatch repair enzyme MutH SH07_RS18335 SM00563 Phosphate acyltransferases SH07_RS18340 SM00354 helix_turn _helix lactose operon repressor SH07_RS18390 SM00862 Transcriptional regulatory protein, C terminal SH07_RS18415 SM00028 Tetratricopeptide repeats SH07_RS18415 SM00862 Transcriptional regulatory protein, C terminal SH07_RS18430 SM00421 helix_turn_helix, Lux Regulon SH07_RS18480 SM00257 Lysin motif SH07_RS18485 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH07_RS18490 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH07_RS18500 SM00091 PAS domain SH07_RS18500 SM00382 ATPases associated with a variety of cellular activities SH07_RS18555 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH07_RS18560 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH07_RS18615 SM00937 SH07_RS18615 SH07_RS18660 SM01022 SH07_RS18660 SH07_RS18700 SM01011 Aminopeptidase P, N-terminal domain SH07_RS18790 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH07_RS18825 SM00861 Transketolase, pyrimidine binding domain SH07_RS18870 SM00731 SprT homologues. SH07_RS18895 SM00732 Likely ribonuclease with RNase H fold. SH07_RS18900 SM00382 ATPases associated with a variety of cellular activities SH07_RS18915 SM01152 SH07_RS18915 SH07_RS18925 SM00729 Elongator protein 3, MiaB family, Radical SAM SH07_RS18935 SM00870 SH07_RS18935 SH07_RS18960 SM00478 endonuclease III SH07_RS18960 SM00525 SH07_RS18960 SH07_RS19020 SM01276 SH07_RS19020 SH07_RS19060 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS19060 SM00895 SH07_RS19060 SH07_RS19205 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS19235 SM00729 Elongator protein 3, MiaB family, Radical SAM SH07_RS19245 SM00563 Phosphate acyltransferases SH07_RS19250 SM00434 DNA Topoisomerase IV SH07_RS19260 SM00530 Helix-turn-helix XRE-family like proteins SH07_RS19270 SM00871 Bacterial transcription activator, effector binding domain SH07_RS19280 SM00448 cheY-homologous receiver domain SH07_RS19280 SM00862 Transcriptional regulatory protein, C terminal SH07_RS19285 SM00387 Histidine kinase-like ATPases SH07_RS19285 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS19305 SM00387 Histidine kinase-like ATPases SH07_RS19305 SM00433 TopoisomeraseII SH07_RS19415 SM00244 prohibitin homologues SH07_RS19440 SM01118 SH07_RS19440 SH07_RS19450 SM00287 Bacterial SH3 domain homologues SH07_RS19465 SM00905 Dihydroneopterin aldolase SH07_RS19470 SM01207 SH07_RS19470 SH07_RS19505 SM00400 zinc finger SH07_RS19505 SM00493 SH07_RS19505 SH07_RS19505 SM00766 DNA primase DnaG DnaB-binding SH07_RS19535 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH07_RS19535 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH07_RS19550 SM00354 helix_turn _helix lactose operon repressor SH07_RS19555 SM01038 Beta galactosidase small chain SH07_RS19585 SM00530 Helix-turn-helix XRE-family like proteins SH07_RS19635 SM00858 SH07_RS19635 SH07_RS19650 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS19650 SM00895 SH07_RS19650 SH07_RS19810 SM00858 SH07_RS19810 SH07_RS19825 SM00420 helix_turn_helix, Deoxyribose operon repressor SH07_RS19825 SM01134 SH07_RS19825 SH07_RS19920 SM00749 bacterial OsmY and nodulation domain SH07_RS19930 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH07_RS19945 SM00465 GIY-YIG type nucleases (URI domain) SH07_RS19985 SM00487 DEAD-like helicases superfamily SH07_RS19985 SM00490 helicase superfamily c-terminal domain SH07_RS19990 SM00028 Tetratricopeptide repeats SH07_RS19995 SM00316 Ribosomal protein S1-like RNA-binding domain SH07_RS19995 SM00322 K homology RNA-binding domain SH07_RS20000 SM01387 SH07_RS20000 SH07_RS20020 SM00316 Ribosomal protein S1-like RNA-binding domain SH07_RS20065 SM00382 ATPases associated with a variety of cellular activities SH07_RS20075 SM01103 SH07_RS20075 SH07_RS20150 SM00382 ATPases associated with a variety of cellular activities SH07_RS20180 SM00382 ATPases associated with a variety of cellular activities SH07_RS20255 SM01130 SH07_RS20255 SH07_RS20260 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS20260 SM00895 SH07_RS20260 SH07_RS20300 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH07_RS20305 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH07_RS20360 SM00316 Ribosomal protein S1-like RNA-binding domain SH07_RS20390 SM00052 Putative diguanylate phosphodiesterase SH07_RS20390 SM00267 diguanylate cyclase SH07_RS20395 SM00829 Enoylreductase SH07_RS20420 SM00878 Biotin carboxylase C-terminal domain SH07_RS20485 SM00062 Bacterial periplasmic substrate-binding proteins SH07_RS20500 SM00382 ATPases associated with a variety of cellular activities SH07_RS20605 SM00422 helix_turn_helix, mercury resistance SH07_RS20620 SM00662 RNA polymerases D SH07_RS20625 SM00363 S4 RNA-binding domain SH07_RS20625 SM01390 SH07_RS20625 SH07_RS20690 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH07_RS20695 SM01374 SH07_RS20695 SH07_RS20715 SM00322 K homology RNA-binding domain SH07_RS20730 SM01382 SH07_RS20730 SH07_RS20730 SM01383 SH07_RS20730 SH07_RS20750 SM01403 SH07_RS20750 SH07_RS20775 SM00382 ATPases associated with a variety of cellular activities SH07_RS20835 SM00495 Chitin-binding domain type 3 SH07_RS20845 SM00838 Elongation factor G C-terminus SH07_RS20845 SM00889 Elongation factor G, domain IV SH07_RS20910 SM00382 ATPases associated with a variety of cellular activities SH07_RS20940 SM00100 Cyclic nucleotide-monophosphate binding domain SH07_RS20940 SM00419 helix_turn_helix, cAMP Regulatory protein SH07_RS21025 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS21025 SM00866 SH07_RS21025 SH07_RS21105 SM00965 Secretin and TonB N terminus short domain SH07_RS21150 SM00363 S4 RNA-binding domain SH07_RS21175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH07_RS21175 SM00387 Histidine kinase-like ATPases SH07_RS21175 SM00388 His Kinase A (phosphoacceptor) domain SH07_RS21180 SM00448 cheY-homologous receiver domain SH07_RS21180 SM00862 Transcriptional regulatory protein, C terminal SH07_RS21190 SM00316 Ribosomal protein S1-like RNA-binding domain SH07_RS21190 SM00732 Likely ribonuclease with RNase H fold. SH07_RS21195 SM00899 SH07_RS21195 SH07_RS21245 SM00421 helix_turn_helix, Lux Regulon SH07_RS21260 SM00382 ATPases associated with a variety of cellular activities SH07_RS21265 SM00420 helix_turn_helix, Deoxyribose operon repressor SH07_RS21265 SM01134 SH07_RS21265 SH07_RS21275 SM00450 Rhodanese Homology Domain SH07_RS21305 SM00642 Alpha-amylase domain SH07_RS21310 SM00642 Alpha-amylase domain SH07_RS21315 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH07_RS21335 SM00354 helix_turn _helix lactose operon repressor SH07_RS21390 SM00382 ATPases associated with a variety of cellular activities SH07_RS21415 SM00382 ATPases associated with a variety of cellular activities SH07_RS21420 SM00382 ATPases associated with a variety of cellular activities SH07_RS21465 SM00382 ATPases associated with a variety of cellular activities SH07_RS21470 SM00382 ATPases associated with a variety of cellular activities SH07_RS21470 SM00962 SRP54-type protein, GTPase domain SH07_RS21470 SM00963 SRP54-type protein, helical bundle domain SH07_RS21545 SM00382 ATPases associated with a variety of cellular activities SH07_RS21550 SM00382 ATPases associated with a variety of cellular activities SH07_RS21585 SM00382 ATPases associated with a variety of cellular activities SH07_RS21675 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH07_RS21710 SM00421 helix_turn_helix, Lux Regulon SH07_RS21755 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS21760 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS21770 SM01235 SH07_RS21770 SH07_RS21780 SM00421 helix_turn_helix, Lux Regulon SH07_RS21805 SM00052 Putative diguanylate phosphodiesterase SH07_RS21830 SM00052 Putative diguanylate phosphodiesterase SH07_RS21830 SM00267 diguanylate cyclase SH07_RS21835 SM00028 Tetratricopeptide repeats SH07_RS21900 SM00382 ATPases associated with a variety of cellular activities SH07_RS21905 SM00382 ATPases associated with a variety of cellular activities SH07_RS21985 SM00530 Helix-turn-helix XRE-family like proteins SH07_RS21990 SM00357 Cold shock protein domain SH07_RS22065 SM00382 ATPases associated with a variety of cellular activities SH07_RS22075 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS22080 SM00047 Lysozyme subfamily 2 SH07_RS22085 SM00642 Alpha-amylase domain SH07_RS22105 SM00346 helix_turn_helix isocitrate lyase regulation SH07_RS22140 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH07_RS22150 SM01007 Class II Aldolase and Adducin N-terminal domain SH07_RS22270 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS22270 SM00895 SH07_RS22270 SH07_RS22285 SM00971 Serine acetyltransferase, N-terminal SH07_RS22305 SM00450 Rhodanese Homology Domain SH07_RS22335 SM00829 Enoylreductase SH07_RS22430 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SH07_RS22430 SM01232 SH07_RS22430 SH07_RS22490 SM00532 Ligase N family SH07_RS22495 SM00072 Guanylate kinase homologues. SH07_RS22500 SM01409 SH07_RS22500 SH07_RS22505 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH07_RS22505 SM00954 Region found in RelA / SpoT proteins SH07_RS22515 SM00487 DEAD-like helicases superfamily SH07_RS22515 SM00490 helicase superfamily c-terminal domain SH07_RS22610 SM00387 Histidine kinase-like ATPases SH07_RS22615 SM00421 helix_turn_helix, Lux Regulon SH07_RS22615 SM00448 cheY-homologous receiver domain SH07_RS22685 SM00342 helix_turn_helix, arabinose operon control protein SH07_RS22705 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS22705 SM00866 SH07_RS22705 SH07_RS22745 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH07_RS22760 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH07_RS22760 SM00895 SH07_RS22760 SH07_RS22785 SM00387 Histidine kinase-like ATPases SH07_RS22785 SM00433 TopoisomeraseII SH07_RS22795 SM00480 DNA polymerase III beta subunit SH07_RS22800 SM00382 ATPases associated with a variety of cellular activities SH07_RS22800 SM00760 Bacterial dnaA protein helix-turn-helix domain