locus-tag	class	description
FYA11_RS00015	COG1413	lyase activity
FYA11_RS00020	COG5433	transposase activity
FYA11_RS00025	COG0842	Transport permease protein
FYA11_RS00030	COG1129	ABC transporter
FYA11_RS00030	COG0842	Transport permease protein
FYA11_RS00035	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYA11_RS00055	COG2081	HI0933 family
FYA11_RS00060	COG0306	phosphate transporter
FYA11_RS00070	COG0589	response to stress
FYA11_RS00075	COG3104	oligopeptide transport
FYA11_RS00085	COG0339	signal peptide processing
FYA11_RS00090	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
FYA11_RS00095	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FYA11_RS00105	COG0640	Transcriptional regulator
FYA11_RS00110	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FYA11_RS00115	COG1393	Belongs to the ArsC family
FYA11_RS00135	COG3065	identical protein binding
FYA11_RS00140	COG2197	response regulator
FYA11_RS00145	COG1285	pathogenesis
FYA11_RS00160	COG3247	response to pH
FYA11_RS00165	COG2771	luxR family
FYA11_RS00175	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYA11_RS00180	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FYA11_RS00185	COG2207	Transcriptional regulator
FYA11_RS00190	COG2207	Transcriptional regulator
FYA11_RS00195	COG0076	glutamate decarboxylase activity
FYA11_RS00200	COG1858	cytochrome C peroxidase
FYA11_RS00210	COG2197	response regulator
FYA11_RS00215	COG0583	DNA-binding transcription factor activity
FYA11_RS00220	COG1295	ribonuclease BN
FYA11_RS00225	COG0477	Major facilitator Superfamily
FYA11_RS00230	COG2982	Protein involved in outer membrane biogenesis
FYA11_RS00235	COG2200	EAL domain
FYA11_RS00240	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYA11_RS00245	COG0612	Peptidase, M16
FYA11_RS00255	COG2199	diguanylate cyclase activity
FYA11_RS00255	COG2200	EAL domain
FYA11_RS00260	COG0457	Tetratricopeptide repeat
FYA11_RS00260	COG3118	belongs to the thioredoxin family
FYA11_RS00265	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
FYA11_RS00270	COG1215	transferase activity, transferring glycosyl groups
FYA11_RS00275	COG1215	transferase activity, transferring glycosyl groups
FYA11_RS00300	COG2194	sulfuric ester hydrolase activity
FYA11_RS00315	COG0814	amino acid
FYA11_RS00320	COG4608	Belongs to the ABC transporter superfamily
FYA11_RS00325	COG0444	Belongs to the ABC transporter superfamily
FYA11_RS00330	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA11_RS00335	COG0601	transmembrane transport
FYA11_RS00360	COG2194	sulfuric ester hydrolase activity
FYA11_RS00365	COG2223	nitrite transmembrane transporter activity
FYA11_RS00370	COG5571	outer membrane autotransporter
FYA11_RS00375	COG2818	Glycosylase
FYA11_RS00380	COG0456	acetyltransferase
FYA11_RS00385	COG0243	molybdopterin cofactor binding
FYA11_RS00390	COG2885	chlorophyll binding
FYA11_RS00405	COG2944	sequence-specific DNA binding
FYA11_RS00410	COG1278	Cold shock
FYA11_RS00440	COG3274	enterobacterial common antigen metabolic process
FYA11_RS00445	COG4682	membrane
FYA11_RS00450	COG4682	membrane
FYA11_RS00455	COG1070	Carbohydrate kinase
FYA11_RS00465	COG4213	ABC transporter substrate-binding protein
FYA11_RS00470	COG1129	ABC transporter
FYA11_RS00475	COG4214	carbohydrate transport
FYA11_RS00480	COG2207	Transcriptional regulator
FYA11_RS00480	COG1609	Transcriptional regulator
FYA11_RS00485	COG2992	FlgJ-related protein
FYA11_RS00490	COG0366	Alpha amylase catalytic
FYA11_RS00495	COG3977	Valine--pyruvate aminotransferase
FYA11_RS00500	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYA11_RS00505	COG1414	Transcriptional regulator
FYA11_RS00515	COG2731	YhcH YjgK YiaL family protein
FYA11_RS00520	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYA11_RS00525	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYA11_RS00530	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYA11_RS00535	COG1070	Carbohydrate kinase
FYA11_RS00540	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
FYA11_RS00545	COG3623	hexulose-6-phosphate isomerase
FYA11_RS00550	COG0235	Class ii aldolase
FYA11_RS00560	COG3713	MltA-interacting MipA family protein
FYA11_RS00565	COG0583	DNA-binding transcription factor activity
FYA11_RS00570	COG1566	PFAM secretion protein HlyD family protein
FYA11_RS00585	COG1012	belongs to the aldehyde dehydrogenase family
FYA11_RS00590	COG1454	alcohol dehydrogenase
FYA11_RS00595	COG3276	selenocysteine insertion sequence binding
FYA11_RS00605	COG0625	glutathione transferase activity
FYA11_RS00610	COG3209	COG3209 Rhs family protein
FYA11_RS00615	COG1413	lyase activity
FYA11_RS00630	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
FYA11_RS00650	COG1566	PFAM secretion protein HlyD family protein
FYA11_RS00660	COG2213	PTS system mannitol-specific
FYA11_RS00660	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS00670	COG3722	fumarate hydratase activity
FYA11_RS00685	COG1620	l-lactate permease
FYA11_RS00690	COG2186	Transcriptional regulator
FYA11_RS00700	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
FYA11_RS00705	COG1045	serine acetyltransferase
FYA11_RS00720	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FYA11_RS00725	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FYA11_RS00730	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
FYA11_RS00735	COG4942	peptidase
FYA11_RS00740	COG2861	carbohydrate metabolic process
FYA11_RS00745	COG1216	Glycosyl transferase, family 2
FYA11_RS00755	COG0156	8-amino-7-oxononanoate synthase activity
FYA11_RS00770	COG0859	PFAM glycosyl transferase family 9
FYA11_RS00775	COG0859	PFAM glycosyl transferase family 9
FYA11_RS00780	COG3307	-O-antigen
FYA11_RS00785	COG0859	PFAM glycosyl transferase family 9
FYA11_RS00795	COG3642	lipopolysaccharide core region biosynthetic process
FYA11_RS00800	COG1442	glycosyl transferase family 8
FYA11_RS00805	COG1442	glycosyl transferase family 8
FYA11_RS00810	COG0438	transferase activity, transferring glycosyl groups
FYA11_RS00815	COG0438	transferase activity, transferring glycosyl groups
FYA11_RS00815	COG4641	Protein conserved in bacteria
FYA11_RS00820	COG0515	serine threonine protein kinase
FYA11_RS00825	COG0438	transferase activity, transferring glycosyl groups
FYA11_RS00830	COG0859	PFAM glycosyl transferase family 9
FYA11_RS00835	COG1519	Transferase
FYA11_RS00865	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FYA11_RS00890	COG1561	YicC-like family, N-terminal region
FYA11_RS00895	COG3645	SOS response
FYA11_RS00900	COG2860	membrane
FYA11_RS00910	COG0194	GDP metabolic process
FYA11_RS00920	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FYA11_RS00925	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FYA11_RS00930	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
FYA11_RS00935	COG0786	glutamate:sodium symporter activity
FYA11_RS00940	COG2233	PERMEase
FYA11_RS00945	COG2982	Protein involved in outer membrane biogenesis
FYA11_RS00950	COG1501	Belongs to the glycosyl hydrolase 31 family
FYA11_RS00955	COG2211	Major facilitator Superfamily
FYA11_RS00970	COG2814	Major facilitator Superfamily
FYA11_RS00975	COG0697	spore germination
FYA11_RS00980	COG1464	Belongs to the NlpA lipoprotein family
FYA11_RS01000	COG2252	PERMEase
FYA11_RS01010	COG2271	Major facilitator Superfamily
FYA11_RS01015	COG2271	Major facilitator Superfamily
FYA11_RS01020	COG3851	Histidine kinase
FYA11_RS01025	COG2197	response regulator
FYA11_RS01030	COG0440	acetolactate synthase activity
FYA11_RS01035	COG0028	Belongs to the TPP enzyme family
FYA11_RS01050	COG2814	Major facilitator Superfamily
FYA11_RS01055	COG0641	radical SAM
FYA11_RS01065	COG2149	membrane
FYA11_RS01075	COG3119	arylsulfatase activity
FYA11_RS01080	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FYA11_RS01085	COG2207	Transcriptional regulator
FYA11_RS01100	COG2188	Transcriptional regulator
FYA11_RS01120	COG5645	(Lipo)protein
FYA11_RS01125	COG0823	Involved in the tonB-independent uptake of proteins
FYA11_RS01130	COG0644	oxidoreductase
FYA11_RS01135	COG2271	Major facilitator Superfamily
FYA11_RS01145	COG0800	Aldolase
FYA11_RS01150	COG3734	2-keto-3-deoxy-galactonokinase
FYA11_RS01155	COG2186	Transcriptional regulator
FYA11_RS01165	COG0561	phosphatase activity
FYA11_RS01170	COG3753	Protein conserved in bacteria
FYA11_RS01175	COG0187	DNA topoisomerase II activity
FYA11_RS01185	COG0592	DNA-directed DNA polymerase activity
FYA11_RS01235	COG0814	amino acid
FYA11_RS01250	COG2091	lysine biosynthetic process via aminoadipic acid
FYA11_RS01255	COG0431	NADPH-dependent FMN reductase
FYA11_RS01260	COG2252	PERMEase
FYA11_RS01265	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FYA11_RS01275	COG3196	Protein conserved in bacteria
FYA11_RS01280	COG0363	glucosamine-6-phosphate deaminase activity
FYA11_RS01285	COG2382	esterase
FYA11_RS01295	COG2723	6-phospho-beta-galactosidase activity
FYA11_RS01300	COG1263	PTS System
FYA11_RS01300	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FYA11_RS01300	COG2190	(PTS) system
FYA11_RS01305	COG3711	transcriptional antiterminator
FYA11_RS01310	COG0704	Plays a role in the regulation of phosphate uptake
FYA11_RS01315	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
FYA11_RS01320	COG0581	inorganic phosphate transmembrane transporter activity
FYA11_RS01325	COG0573	inorganic phosphate transmembrane transporter activity
FYA11_RS01330	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FYA11_RS01335	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
FYA11_RS01385	COG3312	ion transport
FYA11_RS01400	COG0716	FMN binding
FYA11_RS01405	COG1522	sequence-specific DNA binding
FYA11_RS01435	COG1129	ABC transporter
FYA11_RS01440	COG1172	Belongs to the binding-protein-dependent transport system permease family
FYA11_RS01445	COG1879	ABC-type sugar transport system periplasmic component
FYA11_RS01450	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYA11_RS01455	COG1609	Transcriptional regulator
FYA11_RS01460	COG0477	Major facilitator Superfamily
FYA11_RS01465	COG2186	Transcriptional regulator
FYA11_RS01505	COG3085	chromosome segregation
FYA11_RS01510	COG0606	chelatase, subunit chli
FYA11_RS01530	COG3978	acetolactate synthase activity
FYA11_RS01535	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FYA11_RS01545	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYA11_RS01550	COG0583	DNA-binding transcription factor activity
FYA11_RS01560	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FYA11_RS01570	COG0210	DNA helicase
FYA11_RS01585	COG3118	belongs to the thioredoxin family
FYA11_RS01595	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
FYA11_RS01600	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FYA11_RS01605	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
FYA11_RS01610	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
FYA11_RS01615	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FYA11_RS01620	COG1088	dTDP-glucose 4,6-dehydratase activity
FYA11_RS01625	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
FYA11_RS01630	COG0456	acetyltransferase
FYA11_RS01635	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
FYA11_RS01640	COG2244	polysaccharide biosynthetic process
FYA11_RS01660	COG1113	amino acid transport
FYA11_RS01685	COG0641	radical SAM
FYA11_RS01690	COG3119	arylsulfatase activity
FYA11_RS01695	COG3071	HemY protein
FYA11_RS01700	COG2959	enzyme of heme biosynthesis
FYA11_RS01705	COG1587	Uroporphyrinogen-III synthase
FYA11_RS01715	COG3072	Adenylate cyclase
FYA11_RS01730	COG5567	small periplasmic lipoprotein
FYA11_RS01740	COG3159	Protein conserved in bacteria
FYA11_RS01750	COG1011	Hydrolase
FYA11_RS01755	COG0210	DNA helicase
FYA11_RS01760	COG3698	Phosphodiester glycosidase
FYA11_RS01765	COG0598	Magnesium transport protein CorA
FYA11_RS01780	COG2962	Rard protein
FYA11_RS01785	COG2050	protein possibly involved in aromatic compounds catabolism
FYA11_RS01790	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
FYA11_RS01795	COG0514	ATP-dependent DNA helicase (RecQ)
FYA11_RS01800	COG1280	lysine exporter protein (LysE YggA)
FYA11_RS01805	COG1280	lysine exporter protein (LysE YggA)
FYA11_RS01810	COG2267	carboxylic ester hydrolase activity
FYA11_RS01815	COG0561	phosphatase activity
FYA11_RS01820	COG0697	spore germination
FYA11_RS01825	COG0583	DNA-binding transcription factor activity
FYA11_RS01835	COG0412	Dienelactone hydrolase
FYA11_RS01840	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
FYA11_RS01845	COG1322	Protein conserved in bacteria
FYA11_RS01855	COG3165	ubiquinone biosynthetic process from chorismate
FYA11_RS01865	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FYA11_RS01870	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FYA11_RS01875	COG0805	protein transport
FYA11_RS01880	COG0084	hydrolase, TatD family'
FYA11_RS01885	COG0250	Participates in transcription elongation, termination and antitermination
FYA11_RS01890	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
FYA11_RS01895	COG0543	2 iron, 2 sulfur cluster binding
FYA11_RS01900	COG0183	Belongs to the thiolase family
FYA11_RS01915	COG1739	Uncharacterized protein family UPF0029
FYA11_RS01920	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FYA11_RS01925	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
FYA11_RS01960	COG1763	Mo-molybdopterin cofactor biosynthetic process
FYA11_RS01965	COG0746	molybdenum cofactor guanylyltransferase activity
FYA11_RS01970	COG3084	Protein conserved in bacteria
FYA11_RS01975	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
FYA11_RS01980	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
FYA11_RS01985	COG5339	Protein conserved in bacteria
FYA11_RS01990	COG0204	Acyl-transferase
FYA11_RS02000	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FYA11_RS02000	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FYA11_RS02015	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FYA11_RS02025	COG2204	response regulator
FYA11_RS02030	COG3852	Histidine kinase
FYA11_RS02035	COG0174	glutamine synthetase
FYA11_RS02040	COG1217	gtp-binding protein TYPA
FYA11_RS02045	COG2188	Transcriptional regulator
FYA11_RS02050	COG1082	Xylose isomerase domain protein TIM barrel
FYA11_RS02055	COG2271	Major facilitator Superfamily
FYA11_RS02060	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
FYA11_RS02065	COG2211	Major facilitator Superfamily
FYA11_RS02070	COG2211	Major facilitator Superfamily
FYA11_RS02075	COG1501	Belongs to the glycosyl hydrolase 31 family
FYA11_RS02080	COG2017	converts alpha-aldose to the beta-anomer
FYA11_RS02085	COG2942	2-epimerase
FYA11_RS02090	COG3684	Belongs to the aldolase LacD family
FYA11_RS02095	COG2084	Dehydrogenase
FYA11_RS02100	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYA11_RS02105	COG1349	DNA-binding transcription factor activity
FYA11_RS02110	COG1011	Hydrolase
FYA11_RS02125	COG0456	acetyltransferase
FYA11_RS02130	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FYA11_RS02135	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FYA11_RS02145	COG2864	formate dehydrogenase
FYA11_RS02150	COG0437	4 iron, 4 sulfur cluster binding
FYA11_RS02170	COG3711	transcriptional antiterminator
FYA11_RS02170	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS02175	COG1363	Peptidase, m42
FYA11_RS02180	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FYA11_RS02180	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FYA11_RS02185	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS02225	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FYA11_RS02235	COG2258	MOSC domain
FYA11_RS02240	COG2205	protein histidine kinase activity
FYA11_RS02245	COG0745	RESPONSE REGULATOR receiver
FYA11_RS02250	COG3678	ATP-independent chaperone mediated protein folding
FYA11_RS02265	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
FYA11_RS02285	COG3152	Membrane
FYA11_RS02290	COG3691	Protein conserved in bacteria
FYA11_RS02295	COG0589	response to stress
FYA11_RS02300	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FYA11_RS02305	COG1494	fructose-1,6-bisphosphatase
FYA11_RS02315	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
FYA11_RS02330	COG1575	Belongs to the MenA family. Type 1 subfamily
FYA11_RS02345	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
FYA11_RS02350	COG1609	Transcriptional regulator
FYA11_RS02355	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
FYA11_RS02365	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
FYA11_RS02375	COG0626	cystathionine gamma-synthase activity
FYA11_RS02380	COG0460	homoserine dehydrogenase
FYA11_RS02380	COG0527	aspartate kinase activity
FYA11_RS02385	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
FYA11_RS02395	COG0697	spore germination
FYA11_RS02400	COG3738	Protein conserved in bacteria
FYA11_RS02405	COG0371	Dehydrogenase
FYA11_RS02410	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
FYA11_RS02415	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS02415	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS02415	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
FYA11_RS02420	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FYA11_RS02425	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FYA11_RS02430	COG1882	Formate acetyltransferase
FYA11_RS02435	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
FYA11_RS02440	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FYA11_RS02445	COG2207	Transcriptional regulator
FYA11_RS02450	COG2194	sulfuric ester hydrolase activity
FYA11_RS02470	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
FYA11_RS02485	COG0583	DNA-binding transcription factor activity
FYA11_RS02495	COG1309	transcriptional regulator
FYA11_RS02510	COG4206	TonB-dependent receptor
FYA11_RS02545	COG0812	UDP-N-acetylmuramate dehydrogenase activity
FYA11_RS02550	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
FYA11_RS02550	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
FYA11_RS02585	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FYA11_RS02590	COG0250	Participates in transcription elongation, termination and antitermination
FYA11_RS02630	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
FYA11_RS02640	COG2104	thiamine diphosphate biosynthetic process
FYA11_RS02645	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FYA11_RS02680	COG3068	Protein conserved in bacteria
FYA11_RS02695	COG3678	ATP-independent chaperone mediated protein folding
FYA11_RS02700	COG4191	Histidine kinase
FYA11_RS02705	COG2204	response regulator
FYA11_RS02710	COG0151	Belongs to the GarS family
FYA11_RS02745	COG0456	acetyltransferase
FYA11_RS02755	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
FYA11_RS02760	COG2224	Isocitrate lyase
FYA11_RS02775	COG1414	Transcriptional regulator
FYA11_RS02780	COG0646	methionine synthase
FYA11_RS02780	COG1410	methionine synthase
FYA11_RS02785	COG1283	sodium-dependent phosphate transmembrane transporter activity
FYA11_RS02795	COG1187	pseudouridine synthase activity
FYA11_RS02805	COG0527	aspartate kinase activity
FYA11_RS02830	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYA11_RS02845	COG2814	Major facilitator Superfamily
FYA11_RS02845	COG0477	Major facilitator Superfamily
FYA11_RS02850	COG3833	ABC-type maltose transport systems, permease component
FYA11_RS02855	COG1175	transmembrane transport
FYA11_RS02860	COG2182	Extracellular solute-binding protein
FYA11_RS02865	COG3842	ATPase activity
FYA11_RS02900	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
FYA11_RS02910	COG0534	Mate efflux family protein
FYA11_RS02915	COG3237	CsbD-like
FYA11_RS02920	COG0735	belongs to the Fur family
FYA11_RS02935	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FYA11_RS02945	COG0604	alcohol dehydrogenase
FYA11_RS02950	COG0305	Participates in initiation and elongation during chromosome replication
FYA11_RS02955	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FYA11_RS02960	COG1448	Aminotransferase
FYA11_RS02970	COG3700	Belongs to the class B bacterial acid phosphatase family
FYA11_RS02975	COG0432	Pfam Uncharacterised protein family UPF0047
FYA11_RS02980	COG2315	Protein conserved in bacteria
FYA11_RS02985	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FYA11_RS02990	COG0629	single-stranded DNA binding
FYA11_RS03000	COG4943	cyclic-guanylate-specific phosphodiesterase activity
FYA11_RS03005	COG2207	Transcriptional regulator
FYA11_RS03010	COG0789	Transcriptional regulator
FYA11_RS03015	COG2252	PERMEase
FYA11_RS03020	COG0025	NhaP-type Na H and K H
FYA11_RS03025	COG1357	PFAM Pentapeptide repeats (8 copies)
FYA11_RS03035	COG3162	membrane
FYA11_RS03040	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYA11_RS03050	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
FYA11_RS03055	COG0437	4 iron, 4 sulfur cluster binding
FYA11_RS03060	COG3301	Polysulphide reductase, NrfD
FYA11_RS03065	COG1138	Cytochrome C-type biogenesis protein
FYA11_RS03070	COG3088	subunit of a heme lyase
FYA11_RS03075	COG4235	cytochrome complex assembly
FYA11_RS03080	COG1301	dicarboxylic acid transport
FYA11_RS03085	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
FYA11_RS03095	COG1538	Outer membrane efflux protein
FYA11_RS03100	COG1289	transmembrane transporter activity
FYA11_RS03105	COG1566	PFAM secretion protein HlyD family protein
FYA11_RS03115	COG2015	COG2015, Alkyl sulfatase and related hydrolases
FYA11_RS03120	COG1940	carbohydrate kinase activity
FYA11_RS03125	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FYA11_RS03130	COG1172	Belongs to the binding-protein-dependent transport system permease family
FYA11_RS03135	COG1129	ABC transporter
FYA11_RS03140	COG1879	ABC-type sugar transport system periplasmic component
FYA11_RS03145	COG1737	Transcriptional regulator
FYA11_RS03150	COG0698	ribose 5-phosphate isomerase
FYA11_RS03160	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
FYA11_RS03165	COG0456	acetyltransferase
FYA11_RS03170	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
FYA11_RS03175	COG3454	Phosphonate metabolism
FYA11_RS03180	COG4778	phosphonate C-P lyase system protein PhnL
FYA11_RS03185	COG4107	phosphonate C-P lyase system protein PhnK
FYA11_RS03190	COG3627	carbon phosphorus lyase activity
FYA11_RS03195	COG3626	phosphonate metabolism
FYA11_RS03200	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
FYA11_RS03205	COG3624	Phosphonate C-P lyase system protein PhnG
FYA11_RS03210	COG2188	Transcriptional regulator
FYA11_RS03220	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
FYA11_RS03225	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
FYA11_RS03230	COG2764	glyoxalase bleomycin resistance protein dioxygenase
FYA11_RS03235	COG2824	Alkylphosphonate utilization operon protein PhnA
FYA11_RS03240	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
FYA11_RS03250	COG0477	Major facilitator Superfamily
FYA11_RS03260	COG0642	Histidine kinase
FYA11_RS03265	COG0745	RESPONSE REGULATOR receiver
FYA11_RS03270	COG2194	sulfuric ester hydrolase activity
FYA11_RS03275	COG0531	amino acid
FYA11_RS03280	COG2207	Transcriptional regulator
FYA11_RS03285	COG1982	Orn Lys Arg decarboxylase major
FYA11_RS03290	COG2169	Transcriptional regulator
FYA11_RS03295	COG1486	melibiose metabolic process
FYA11_RS03300	COG2211	Major facilitator Superfamily
FYA11_RS03305	COG3647	Membrane
FYA11_RS03310	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
FYA11_RS03310	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
FYA11_RS03315	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
FYA11_RS03320	COG4565	transcriptional regulatory protein
FYA11_RS03325	COG3290	protein histidine kinase activity
FYA11_RS03330	COG3592	Divergent 4Fe-4S mono-cluster
FYA11_RS03335	COG2388	GCN5-related N-acetyl-transferase
FYA11_RS03350	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
FYA11_RS03355	COG3104	oligopeptide transport
FYA11_RS03360	COG1982	Orn Lys Arg decarboxylase major
FYA11_RS03365	COG0531	amino acid
FYA11_RS03370	COG3710	Transcriptional regulator
FYA11_RS03380	COG1309	transcriptional regulator
FYA11_RS03385	COG4232	protein-disulfide reductase activity
FYA11_RS03395	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
FYA11_RS03400	COG1027	Aspartate ammonia-lyase
FYA11_RS03405	COG3030	protein affecting phage T7 exclusion by the F plasmid
FYA11_RS03410	COG0531	amino acid
FYA11_RS03435	COG1509	lysine 2,3-aminomutase activity
FYA11_RS03445	COG5510	response to toxic substance
FYA11_RS03450	COG5510	response to toxic substance
FYA11_RS03455	COG2076	Multidrug Resistance protein
FYA11_RS03460	COG3040	lipid binding
FYA11_RS03465	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FYA11_RS03480	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
FYA11_RS03485	COG1053	succinate dehydrogenase
FYA11_RS03495	COG0531	amino acid
FYA11_RS03510	COG1511	domain protein
FYA11_RS03510	COG3264	Mechanosensitive ion channel
FYA11_RS03550	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
FYA11_RS03555	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
FYA11_RS03555	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
FYA11_RS03560	COG0802	atpase or kinase
FYA11_RS03565	COG0860	N-Acetylmuramoyl-L-alanine amidase
FYA11_RS03585	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FYA11_RS03590	COG0330	HflC and HflK could
FYA11_RS03595	COG0330	HflC and HflK could
FYA11_RS03600	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
FYA11_RS03615	COG0557	exoribonuclease II activity
FYA11_RS03620	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FYA11_RS03625	COG3789	protein conserved in bacteria
FYA11_RS03630	COG1842	Phage shock protein A
FYA11_RS03640	COG3766	membrane
FYA11_RS03645	COG5463	Belongs to the UPF0441 family
FYA11_RS03650	COG0754	glutathionylspermidine amidase activity
FYA11_RS03655	COG1960	acyl-CoA dehydrogenase activity
FYA11_RS03665	COG3650	response to hydrogen peroxide
FYA11_RS03670	COG1073	alpha beta
FYA11_RS03685	COG3037	sugar-specific permease SgaT UlaA
FYA11_RS03690	COG3414	Phosphotransferase system galactitol-specific IIB component
FYA11_RS03695	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS03730	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
FYA11_RS03750	COG3061	Opacity-associated protein A
FYA11_RS03755	COG0545	Peptidyl-prolyl cis-trans isomerase
FYA11_RS03760	COG1113	amino acid transport
FYA11_RS03770	COG0697	spore germination
FYA11_RS03775	COG0702	epimerase
FYA11_RS03780	COG1733	regulation of RNA biosynthetic process
FYA11_RS03785	COG0737	Belongs to the 5'-nucleotidase family
FYA11_RS03790	COG1218	3'(2'),5'-bisphosphate nucleotidase
FYA11_RS03800	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
FYA11_RS03810	COG1253	flavin adenine dinucleotide binding
FYA11_RS03820	COG0729	surface antigen
FYA11_RS03825	COG2911	Protein conserved in bacteria
FYA11_RS03830	COG2105	PFAM AIG2 family protein
FYA11_RS03835	COG2336	PFAM SpoVT AbrB
FYA11_RS03840	COG2337	Toxic component of a toxin-antitoxin (TA) module
FYA11_RS03845	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
FYA11_RS03850	COG1879	ABC-type sugar transport system periplasmic component
FYA11_RS03855	COG1129	ABC transporter
FYA11_RS03860	COG1172	Belongs to the binding-protein-dependent transport system permease family
FYA11_RS03865	COG1172	Belongs to the binding-protein-dependent transport system permease family
FYA11_RS03875	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
FYA11_RS03885	COG0312	modulator of DNA gyrase
FYA11_RS03890	COG3783	Cytochrome b(562)
FYA11_RS03895	COG0602	queuosine metabolic process
FYA11_RS03900	COG1328	CTP reductase activity
FYA11_RS03905	COG0366	Alpha amylase catalytic
FYA11_RS03910	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FYA11_RS03910	COG1263	PTS System
FYA11_RS03915	COG1609	Transcriptional regulator
FYA11_RS03925	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
FYA11_RS03930	COG0251	oxidation-reduction process
FYA11_RS03950	COG0251	oxidation-reduction process
FYA11_RS03955	COG1028	Short-chain dehydrogenase reductase Sdr
FYA11_RS03960	COG1309	transcriptional regulator
FYA11_RS03965	COG2731	YhcH YjgK YiaL family protein
FYA11_RS03975	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
FYA11_RS03980	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
FYA11_RS03985	COG0456	acetyltransferase
FYA11_RS03990	COG4269	membrane
FYA11_RS03995	COG0525	valine-tRNA ligase activity
FYA11_RS04000	COG2927	DNA polymerase III (CHI subunit)
FYA11_RS04010	COG0795	lipopolysaccharide-transporting ATPase activity
FYA11_RS04015	COG0795	lipopolysaccharide-transporting ATPase activity
FYA11_RS04020	COG0433	COG0433 Predicted ATPase
FYA11_RS04025	COG1609	Transcriptional regulator
FYA11_RS04030	COG2610	gluconate transmembrane transporter activity
FYA11_RS04035	COG1028	Short-chain dehydrogenase reductase Sdr
FYA11_RS04040	COG1063	alcohol dehydrogenase
FYA11_RS04045	COG3265	gluconokinase activity
FYA11_RS04050	COG1064	alcohol dehydrogenase
FYA11_RS04085	COG3385	transposase activity
FYA11_RS04090	COG2814	Major facilitator Superfamily
FYA11_RS04095	COG0673	inositol 2-dehydrogenase activity
FYA11_RS04120	COG2826	transposase and inactivated derivatives, IS30 family
FYA11_RS04135	COG2085	NADP oxidoreductase coenzyme F420-dependent
FYA11_RS04140	COG1120	ATPase activity
FYA11_RS04145	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FYA11_RS04150	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FYA11_RS04155	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
FYA11_RS04160	COG4772	TonB-dependent receptor
FYA11_RS04165	COG3712	iron ion homeostasis
FYA11_RS04170	COG1595	DNA-templated transcription, initiation
FYA11_RS04180	COG2390	Transcriptional regulator
FYA11_RS04185	COG2610	gluconate transmembrane transporter activity
FYA11_RS04190	COG0129	dihydroxy-acid dehydratase activity
FYA11_RS04195	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYA11_RS04200	COG1414	Transcriptional regulator
FYA11_RS04205	COG1349	DNA-binding transcription factor activity
FYA11_RS04210	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FYA11_RS04215	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS04220	COG0434	BtpA family
FYA11_RS04225	COG3775	system Galactitol-specific IIC component
FYA11_RS04230	COG3414	Phosphotransferase system galactitol-specific IIB component
FYA11_RS04235	COG1363	Peptidase, m42
FYA11_RS04245	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
FYA11_RS04250	COG3153	acetyltransferase
FYA11_RS04265	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
FYA11_RS04265	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FYA11_RS04275	COG3055	Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses
FYA11_RS04280	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
FYA11_RS04285	COG0582	viral genome integration into host DNA
FYA11_RS04295	COG4974	Belongs to the 'phage' integrase family
FYA11_RS04300	COG3539	Fimbrial protein
FYA11_RS04305	COG3539	Fimbrial protein
FYA11_RS04310	COG3121	Chaperone
FYA11_RS04315	COG3188	usher protein
FYA11_RS04320	COG3539	Fimbrial protein
FYA11_RS04325	COG3539	Fimbrial protein
FYA11_RS04330	COG3539	Fimbrial protein
FYA11_RS04335	COG2610	gluconate transmembrane transporter activity
FYA11_RS04345	COG0246	Mannitol dehydrogenase
FYA11_RS04350	COG2186	Transcriptional regulator
FYA11_RS04370	COG0583	DNA-binding transcription factor activity
FYA11_RS04375	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
FYA11_RS04380	COG0700	Nucleoside recognition
FYA11_RS04385	COG3366	ferrous iron transmembrane transporter activity
FYA11_RS04395	COG0477	Major facilitator Superfamily
FYA11_RS04400	COG3204	pilus organization
FYA11_RS04410	COG1924	4 iron, 4 sulfur cluster binding
FYA11_RS04415	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
FYA11_RS04420	COG2733	membrane
FYA11_RS04425	COG2814	Major facilitator Superfamily
FYA11_RS04435	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYA11_RS04440	COG5457	Domain of unknown function (DUF1127)
FYA11_RS04445	COG1196	nuclear chromosome segregation
FYA11_RS04455	COG4268	DNA restriction-modification system
FYA11_RS04460	COG1401	restriction endodeoxyribonuclease activity
FYA11_RS04470	COG0732	type I restriction modification DNA specificity domain
FYA11_RS04475	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
FYA11_RS04485	COG1715	Restriction endonuclease
FYA11_RS04490	COG0523	cobalamin synthesis protein
FYA11_RS04495	COG2879	small protein
FYA11_RS04500	COG1966	Carbon starvation protein
FYA11_RS04505	COG0840	transmembrane signaling receptor activity
FYA11_RS04510	COG2271	Major facilitator Superfamily
FYA11_RS04515	COG1802	Transcriptional regulator
FYA11_RS04520	COG1063	alcohol dehydrogenase
FYA11_RS04535	COG1484	DNA-dependent DNA replication
FYA11_RS04555	COG2197	response regulator
FYA11_RS04560	COG2197	response regulator
FYA11_RS04565	COG4114	ferric iron reductase
FYA11_RS04595	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
FYA11_RS04600	COG0456	acetyltransferase
FYA11_RS04605	COG1011	Hydrolase
FYA11_RS04615	COG2823	Periplasmic or secreted lipoprotein
FYA11_RS04625	COG4667	esterase of the alpha-beta hydrolase superfamily
FYA11_RS04630	COG0084	hydrolase, TatD family'
FYA11_RS04635	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
FYA11_RS04640	COG1328	CTP reductase activity
FYA11_RS04665	COG3550	peptidyl-serine autophosphorylation
FYA11_RS04675	COG3726	membrane protein affecting hemolysin expression
FYA11_RS04680	COG0560	Phosphoserine phosphatase
FYA11_RS04685	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
FYA11_RS04690	COG3172	ATPase kinase involved in NAD metabolism
FYA11_RS04690	COG1056	cytidyltransferase-related domain
FYA11_RS04695	COG0488	(ABC) transporter
FYA11_RS04700	COG0741	lytic transglycosylase activity
FYA11_RS04720	COG2207	Transcriptional regulator
FYA11_RS04720	COG3708	Transcriptional regulator
FYA11_RS04725	COG3045	CreA protein
FYA11_RS04730	COG0745	RESPONSE REGULATOR receiver
FYA11_RS04735	COG2205	protein histidine kinase activity
FYA11_RS04740	COG4452	Inner membrane protein CreD
FYA11_RS04745	COG0745	RESPONSE REGULATOR receiver
FYA11_RS04755	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
FYA11_RS04765	COG0527	aspartate kinase activity
FYA11_RS04765	COG0460	homoserine dehydrogenase
FYA11_RS04775	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
FYA11_RS04790	COG1115	amino acid carrier protein
FYA11_RS04795	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
FYA11_RS04800	COG0521	Mo-molybdopterin cofactor biosynthetic process
FYA11_RS04805	COG1584	GPR1 FUN34 yaaH family protein
FYA11_RS04810	COG4735	regulation of single-species biofilm formation
FYA11_RS04830	COG3385	transposase activity
FYA11_RS04840	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
FYA11_RS04845	COG0583	DNA-binding transcription factor activity
FYA11_RS04865	COG0196	riboflavin kinase activity
FYA11_RS04880	COG1047	Peptidyl-prolyl cis-trans
FYA11_RS04900	COG0505	Belongs to the CarA family
FYA11_RS04905	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
FYA11_RS04955	COG0644	oxidoreductase
FYA11_RS04960	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
FYA11_RS04965	COG2271	Major facilitator Superfamily
FYA11_RS04980	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
FYA11_RS05005	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FYA11_RS05010	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
FYA11_RS05015	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
FYA11_RS05020	COG1357	PFAM Pentapeptide repeats (8 copies)
FYA11_RS05030	COG0564	pseudouridine synthase activity
FYA11_RS05040	COG0417	DNA replication proofreading
FYA11_RS05045	COG0235	Class ii aldolase
FYA11_RS05050	COG2160	L-arabinose isomerase activity
FYA11_RS05055	COG1069	ribulokinase activity
FYA11_RS05060	COG4977	sequence-specific DNA binding
FYA11_RS05065	COG0586	Pfam SNARE associated Golgi protein
FYA11_RS05070	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
FYA11_RS05075	COG1178	ABC-type Fe3 transport system permease component
FYA11_RS05080	COG4143	(ABC) transporter
FYA11_RS05085	COG4533	DNA binding
FYA11_RS05095	COG2814	Major facilitator Superfamily
FYA11_RS05110	COG0473	3-isopropylmalate dehydrogenase activity
FYA11_RS05125	COG0583	DNA-binding transcription factor activity
FYA11_RS05135	COG0028	Belongs to the TPP enzyme family
FYA11_RS05140	COG0440	acetolactate synthase activity
FYA11_RS05150	COG1609	Transcriptional regulator
FYA11_RS05155	COG2001	Belongs to the MraZ family
FYA11_RS05165	COG3116	cell division
FYA11_RS05170	COG0768	penicillin binding
FYA11_RS05175	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FYA11_RS05180	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
FYA11_RS05190	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
FYA11_RS05195	COG0772	Belongs to the SEDS family
FYA11_RS05210	COG1181	Belongs to the D-alanine--D-alanine ligase family
FYA11_RS05215	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
FYA11_RS05220	COG0849	cell division
FYA11_RS05225	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
FYA11_RS05245	COG0494	nUDIX hydrolase
FYA11_RS05260	COG0237	dephospho-CoA kinase activity
FYA11_RS05270	COG1459	type II secretion system
FYA11_RS05275	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
FYA11_RS05280	COG4969	Belongs to the N-Me-Phe pilin family
FYA11_RS05285	COG0157	Belongs to the NadC ModD family
FYA11_RS05290	COG3023	N-Acetylmuramoyl-L-alanine amidase
FYA11_RS05295	COG3725	Membrane protein required for beta-lactamase induction
FYA11_RS05300	COG1113	amino acid transport
FYA11_RS05305	COG2186	Transcriptional regulator
FYA11_RS05310	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
FYA11_RS05315	COG0508	dehydrogenase complex catalyzes the overall conversion of
FYA11_RS05320	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FYA11_RS05325	COG3064	Membrane
FYA11_RS05330	COG1049	propionate catabolic process, 2-methylcitrate cycle
FYA11_RS05355	COG2132	Multicopper oxidase
FYA11_RS05360	COG4993	Dehydrogenase
FYA11_RS05365	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
FYA11_RS05370	COG0288	reversible hydration of carbon dioxide
FYA11_RS05375	COG1131	(ABC) transporter
FYA11_RS05380	COG0842	Transport permease protein
FYA11_RS05385	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS05390	COG0726	polysaccharide deacetylase
FYA11_RS05400	COG5464	transposase or invertase
FYA11_RS05415	COG3539	Fimbrial protein
FYA11_RS05420	COG3539	Fimbrial protein
FYA11_RS05425	COG3539	Fimbrial protein
FYA11_RS05430	COG3539	Fimbrial protein
FYA11_RS05435	COG3188	usher protein
FYA11_RS05440	COG3121	Chaperone
FYA11_RS05445	COG3539	Fimbrial protein
FYA11_RS05450	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
FYA11_RS05455	COG0617	tRNA 3'-terminal CCA addition
FYA11_RS05465	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
FYA11_RS05475	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
FYA11_RS05480	COG1643	Atp-dependent helicase
FYA11_RS05485	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FYA11_RS05495	COG1120	ATPase activity
FYA11_RS05500	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FYA11_RS05505	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FYA11_RS05530	COG2860	membrane
FYA11_RS05535	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FYA11_RS05550	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FYA11_RS05555	COG3835	regulator
FYA11_RS05570	COG1408	metallophosphoesterase
FYA11_RS05585	COG0024	Methionine aminopeptidase
FYA11_RS05610	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
FYA11_RS05615	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
FYA11_RS05620	COG0575	Belongs to the CDS family
FYA11_RS05625	COG0750	zinc metalloprotease
FYA11_RS05635	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
FYA11_RS05640	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
FYA11_RS05665	COG0587	DNA-directed DNA polymerase activity
FYA11_RS05675	COG1982	Orn Lys Arg decarboxylase major
FYA11_RS05680	COG0346	lactoylglutathione lyase activity
FYA11_RS05685	COG0037	tRNA processing
FYA11_RS05690	COG4568	rho-dependent transcription termination
FYA11_RS05700	COG4681	YaeQ
FYA11_RS05705	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
FYA11_RS05710	COG3015	lipoprotein NlpE involved in copper resistance
FYA11_RS05715	COG0791	NLP P60 protein
FYA11_RS05725	COG1720	tRNA m6t6A37 methyltransferase activity
FYA11_RS05735	COG1464	Belongs to the NlpA lipoprotein family
FYA11_RS05740	COG2011	ABC-type metal ion transport system permease component
FYA11_RS05745	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FYA11_RS05750	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
FYA11_RS05785	COG0656	L-ascorbic acid biosynthetic process
FYA11_RS05790	COG0583	DNA-binding transcription factor activity
FYA11_RS05800	COG2226	methyltransferase
FYA11_RS05805	COG1388	LysM domain
FYA11_RS05805	COG0741	lytic transglycosylase activity
FYA11_RS05815	COG2226	methyltransferase
FYA11_RS05825	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FYA11_RS05855	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FYA11_RS05865	COG1960	acyl-CoA dehydrogenase activity
FYA11_RS05875	COG0121	glutamine amidotransferase
FYA11_RS05880	COG3034	peptidoglycan biosynthetic process
FYA11_RS05885	COG3041	Addiction module toxin RelE StbE family
FYA11_RS05890	COG3077	Addiction module antitoxin, RelB DinJ family
FYA11_RS05895	COG0791	NLP P60 protein
FYA11_RS05900	COG1943	Transposase
FYA11_RS05920	COG2161	toxin-antitoxin pair type II binding
FYA11_RS05930	COG0454	-acetyltransferase
FYA11_RS05935	COG1690	Belongs to the RtcB family
FYA11_RS05940	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
FYA11_RS05945	COG2195	Cleaves the N-terminal amino acid of tripeptides
FYA11_RS05975	COG0247	lactate metabolic process
FYA11_RS05980	COG2207	Transcriptional regulator
FYA11_RS05985	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FYA11_RS05995	COG3059	membrane
FYA11_RS06015	COG1388	LysM domain
FYA11_RS06060	COG3188	usher protein
FYA11_RS06070	COG3121	Chaperone
FYA11_RS06075	COG0727	PFAM Uncharacterised protein family (UPF0153)
FYA11_RS06080	COG3477	response to acidic pH
FYA11_RS06085	COG2080	2 iron, 2 sulfur cluster binding
FYA11_RS06090	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
FYA11_RS06095	COG1529	Aldehyde oxidase and xanthine dehydrogenase
FYA11_RS06100	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
FYA11_RS06105	COG0583	DNA-binding transcription factor activity
FYA11_RS06110	COG0582	viral genome integration into host DNA
FYA11_RS06130	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
FYA11_RS06140	COG1061	Type III restriction enzyme res subunit
FYA11_RS06155	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
FYA11_RS06160	COG1414	Transcriptional regulator
FYA11_RS06165	COG3507	Belongs to the glycosyl hydrolase 43 family
FYA11_RS06170	COG2211	Major facilitator Superfamily
FYA11_RS06175	COG0129	dihydroxy-acid dehydratase activity
FYA11_RS06180	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYA11_RS06185	COG3415	Transposase
FYA11_RS06185	COG2801	Transposase and inactivated derivatives
FYA11_RS06195	COG2963	transposase activity
FYA11_RS06215	COG3842	ATPase activity
FYA11_RS06220	COG2040	homocysteine
FYA11_RS06225	COG0833	amino acid
FYA11_RS06250	COG2826	transposase and inactivated derivatives, IS30 family
FYA11_RS06265	COG0583	DNA-binding transcription factor activity
FYA11_RS06270	COG3596	GTP binding
FYA11_RS06290	COG2378	regulation of single-species biofilm formation
FYA11_RS06310	COG2003	Belongs to the UPF0758 family
FYA11_RS06345	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYA11_RS06360	COG3250	beta-galactosidase activity
FYA11_RS06365	COG1609	Transcriptional regulator
FYA11_RS06370	COG1414	Transcriptional regulator
FYA11_RS06390	COG3971	2-oxopent-4-enoate hydratase activity
FYA11_RS06405	COG2814	Major facilitator Superfamily
FYA11_RS06410	COG3122	Protein conserved in bacteria
FYA11_RS06420	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
FYA11_RS06450	COG1215	transferase activity, transferring glycosyl groups
FYA11_RS06460	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
FYA11_RS06465	COG4521	taurine ABC transporter
FYA11_RS06475	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYA11_RS06480	COG2175	clavaminate synthase activity
FYA11_RS06485	COG0113	porphobilinogen synthase activity
FYA11_RS06490	COG3468	outer membrane autotransporter barrel domain protein
FYA11_RS06505	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FYA11_RS06510	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FYA11_RS06515	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
FYA11_RS06535	COG1181	Belongs to the D-alanine--D-alanine ligase family
FYA11_RS06545	COG1785	Belongs to the alkaline phosphatase family
FYA11_RS06555	COG3706	GGDEF domain
FYA11_RS06560	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
FYA11_RS06580	COG4126	flavin adenine dinucleotide binding
FYA11_RS06605	COG1940	carbohydrate kinase activity
FYA11_RS06610	COG2814	Major facilitator Superfamily
FYA11_RS06615	COG0419	ATPase involved in DNA repair
FYA11_RS06620	COG0420	3'-5' exonuclease activity
FYA11_RS06625	COG0745	RESPONSE REGULATOR receiver
FYA11_RS06630	COG5002	protein histidine kinase activity
FYA11_RS06635	COG1114	Component of the transport system for branched-chain amino acids
FYA11_RS06640	COG1113	amino acid transport
FYA11_RS06645	COG0366	Alpha amylase catalytic
FYA11_RS06665	COG1862	Preprotein translocase
FYA11_RS06670	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FYA11_RS06675	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FYA11_RS06680	COG1403	HNH endonuclease
FYA11_RS06685	COG3248	Nucleoside-binding outer membrane protein
FYA11_RS06690	COG4238	major outer membrane lipoprotein
FYA11_RS06700	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FYA11_RS06700	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FYA11_RS06715	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
FYA11_RS06720	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
FYA11_RS06725	COG0667	Aldo Keto reductase
FYA11_RS06735	COG0142	geranyltranstransferase activity
FYA11_RS06750	COG0693	protein deglycase activity
FYA11_RS06755	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
FYA11_RS06765	COG2814	Major facilitator Superfamily
FYA11_RS06775	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
FYA11_RS06780	COG1845	cytochrome c oxidase, subunit III
FYA11_RS06785	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYA11_RS06790	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
FYA11_RS06795	COG2223	nitrite transmembrane transporter activity
FYA11_RS06800	COG3056	Lipoprotein
FYA11_RS06805	COG0271	Belongs to the BolA IbaG family
FYA11_RS06825	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
FYA11_RS06830	COG0776	regulation of translation
FYA11_RS06835	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FYA11_RS06840	COG1555	photosystem II stabilization
FYA11_RS06845	COG0824	Thioesterase
FYA11_RS06855	COG4533	DNA binding
FYA11_RS06865	COG1522	sequence-specific DNA binding
FYA11_RS06870	COG1132	(ABC) transporter
FYA11_RS06875	COG1132	(ABC) transporter
FYA11_RS06880	COG0347	Belongs to the P(II) protein family
FYA11_RS06885	COG0004	ammonium transporteR
FYA11_RS06890	COG1946	Acyl-CoA thioesterase
FYA11_RS06895	COG3126	Type III secretion system lipoprotein chaperone (YscW)
FYA11_RS06900	COG3695	enzyme binding
FYA11_RS06910	COG5507	3-demethylubiquinone-9 3-methyltransferase
FYA11_RS06915	COG4943	cyclic-guanylate-specific phosphodiesterase activity
FYA11_RS06925	COG0110	maltose O-acetyltransferase activity
FYA11_RS06945	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FYA11_RS06950	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYA11_RS06955	COG1309	transcriptional regulator
FYA11_RS06960	COG1196	nuclear chromosome segregation
FYA11_RS06960	COG3264	Mechanosensitive ion channel
FYA11_RS06970	COG3923	Primosomal replication protein n
FYA11_RS06975	COG2832	Protein of unknown function (DUF454)
FYA11_RS06985	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FYA11_RS07025	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYA11_RS07030	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FYA11_RS07030	COG4651	solute:proton antiporter activity
FYA11_RS07035	COG2223	nitrite transmembrane transporter activity
FYA11_RS07040	COG0737	Belongs to the 5'-nucleotidase family
FYA11_RS07045	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
FYA11_RS07050	COG3735	TraB family
FYA11_RS07060	COG3093	addiction module antidote protein HigA
FYA11_RS07065	COG2217	Heavy metal translocating P-type atpase
FYA11_RS07070	COG2066	Belongs to the glutaminase family
FYA11_RS07075	COG0531	amino acid
FYA11_RS07080	COG0789	Transcriptional regulator
FYA11_RS07085	COG1585	Membrane protein implicated in regulation of membrane protease activity
FYA11_RS07090	COG0330	HflC and HflK could
FYA11_RS07095	COG4619	ABC transporter
FYA11_RS07100	COG0390	transport system, permease component
FYA11_RS07105	COG3118	belongs to the thioredoxin family
FYA11_RS07110	COG0300	oxidoreductase activity
FYA11_RS07115	COG2755	lipolytic protein G-D-S-L family
FYA11_RS07120	COG4181	ATPase activity
FYA11_RS07125	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
FYA11_RS07130	COG3209	COG3209 Rhs family protein
FYA11_RS07160	COG0583	DNA-binding transcription factor activity
FYA11_RS07170	COG1414	Transcriptional regulator
FYA11_RS07175	COG3960	tartronate-semialdehyde synthase activity
FYA11_RS07180	COG3622	Belongs to the hyi family
FYA11_RS07185	COG2084	Dehydrogenase
FYA11_RS07190	COG1953	Uracil, thiamine, allantoin
FYA11_RS07200	COG2233	PERMEase
FYA11_RS07205	COG1929	Belongs to the glycerate kinase type-1 family
FYA11_RS07210	COG3257	ureidoglycine aminohydrolase activity
FYA11_RS07215	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FYA11_RS07220	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FYA11_RS07225	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
FYA11_RS07230	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
FYA11_RS07240	COG0549	Belongs to the carbamate kinase family
FYA11_RS07245	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
FYA11_RS07250	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
FYA11_RS07260	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
FYA11_RS07270	COG1988	membrane-bound metal-dependent
FYA11_RS07275	COG2501	S4 domain
FYA11_RS07285	COG3539	Fimbrial protein
FYA11_RS07290	COG3121	Chaperone
FYA11_RS07295	COG3188	usher protein
FYA11_RS07300	COG3539	Fimbrial protein
FYA11_RS07305	COG3539	Fimbrial protein
FYA11_RS07330	COG0582	viral genome integration into host DNA
FYA11_RS07360	COG2076	Multidrug Resistance protein
FYA11_RS07370	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
FYA11_RS07375	COG1881	PFAM PEBP family protein
FYA11_RS07380	COG2207	Transcriptional regulator
FYA11_RS07435	COG3772	lysozyme
FYA11_RS07450	COG5562	phage envelope protein
FYA11_RS07465	COG4220	transposase activity
FYA11_RS07480	COG0500	methyltransferase
FYA11_RS07490	COG2207	Transcriptional regulator
FYA11_RS07495	COG4571	Outer membrane protease
FYA11_RS07500	COG2207	Transcriptional regulator
FYA11_RS07510	COG4783	chaperone-mediated protein folding
FYA11_RS07515	COG1215	transferase activity, transferring glycosyl groups
FYA11_RS07520	COG5002	protein histidine kinase activity
FYA11_RS07525	COG0745	RESPONSE REGULATOR receiver
FYA11_RS07530	COG1538	Outer membrane efflux protein
FYA11_RS07535	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYA11_RS07540	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYA11_RS07545	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FYA11_RS07550	COG1113	amino acid transport
FYA11_RS07555	COG0668	transmembrane transport
FYA11_RS07560	COG0778	Nitroreductase
FYA11_RS07565	COG2315	Protein conserved in bacteria
FYA11_RS07590	COG3385	transposase activity
FYA11_RS07595	COG2977	Belongs to the P-Pant transferase superfamily
FYA11_RS07600	COG4771	TonB-dependent receptor
FYA11_RS07605	COG2382	esterase
FYA11_RS07610	COG3251	PFAM MbtH domain protein
FYA11_RS07615	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
FYA11_RS07615	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FYA11_RS07620	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
FYA11_RS07625	COG1120	ATPase activity
FYA11_RS07630	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FYA11_RS07635	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FYA11_RS07645	COG4592	Periplasmic binding protein
FYA11_RS07650	COG1169	isochorismate synthase
FYA11_RS07655	COG1021	2,3-dihydroxybenzoate-AMP ligase
FYA11_RS07660	COG1535	isochorismatase
FYA11_RS07660	COG3433	isochorismatase activity
FYA11_RS07665	COG1028	Short-chain dehydrogenase reductase Sdr
FYA11_RS07670	COG2050	protein possibly involved in aromatic compounds catabolism
FYA11_RS07675	COG1966	Carbon starvation protein
FYA11_RS07680	COG2879	small protein
FYA11_RS07685	COG0371	Dehydrogenase
FYA11_RS07690	COG0436	Aminotransferase
FYA11_RS07695	COG1475	DNA binding
FYA11_RS07700	COG3969	phosphoadenosine phosphosulfate
FYA11_RS07705	COG0583	DNA-binding transcription factor activity
FYA11_RS07710	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
FYA11_RS07715	COG0450	alkyl hydroperoxide reductase
FYA11_RS07720	COG3634	alkyl hydroperoxide reductase activity
FYA11_RS07725	COG0589	response to stress
FYA11_RS07730	COG1063	alcohol dehydrogenase
FYA11_RS07735	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FYA11_RS07740	COG3719	Belongs to the RNase T2 family
FYA11_RS07745	COG0471	metal ion transport
FYA11_RS07760	COG3051	citrate lyase alpha subunit
FYA11_RS07765	COG2301	Belongs to the HpcH HpaI aldolase family
FYA11_RS07775	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
FYA11_RS07780	COG3290	protein histidine kinase activity
FYA11_RS07785	COG4565	transcriptional regulatory protein
FYA11_RS07790	COG3069	C4-dicarboxylate transmembrane transporter activity
FYA11_RS07815	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FYA11_RS07825	COG0583	DNA-binding transcription factor activity
FYA11_RS07840	COG1686	Belongs to the peptidase S11 family
FYA11_RS07845	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
FYA11_RS07850	COG0772	Belongs to the SEDS family
FYA11_RS07855	COG0768	penicillin binding
FYA11_RS07865	COG0799	negative regulation of ribosome biogenesis
FYA11_RS07870	COG0406	alpha-ribazole phosphatase activity
FYA11_RS07880	COG1466	dna polymerase III delta subunit
FYA11_RS07895	COG2888	peptidyl-tyrosine sulfation
FYA11_RS07900	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
FYA11_RS07910	COG2214	Heat shock protein DnaJ domain protein
FYA11_RS07915	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
FYA11_RS07925	COG2214	Heat shock protein DnaJ domain protein
FYA11_RS07930	COG0443	Heat shock 70 kDa protein
FYA11_RS07940	COG1126	abc transporter atp-binding protein
FYA11_RS07945	COG0765	amino acid transport
FYA11_RS07950	COG0765	amino acid transport
FYA11_RS07955	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA11_RS07965	COG0815	Transfers the fatty acyl group on membrane lipoproteins
FYA11_RS07970	COG4535	Mg2 and Co2 transporter CorC
FYA11_RS07980	COG1702	phosphate starvation-inducible protein PhoH
FYA11_RS07990	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FYA11_RS08025	COG0367	asparagine synthase
FYA11_RS08030	COG0647	UMP catabolic process
FYA11_RS08035	COG1846	Transcriptional regulator
FYA11_RS08035	COG1940	carbohydrate kinase activity
FYA11_RS08040	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
FYA11_RS08050	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FYA11_RS08050	COG1263	PTS System
FYA11_RS08050	COG2190	(PTS) system
FYA11_RS08070	COG0735	belongs to the Fur family
FYA11_RS08080	COG0716	FMN binding
FYA11_RS08090	COG0596	Alpha beta hydrolase
FYA11_RS08095	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
FYA11_RS08100	COG0033	Phosphoglucomutase
FYA11_RS08120	COG0531	amino acid
FYA11_RS08125	COG1982	Orn Lys Arg decarboxylase major
FYA11_RS08135	COG0745	RESPONSE REGULATOR receiver
FYA11_RS08140	COG2205	protein histidine kinase activity
FYA11_RS08170	COG3209	COG3209 Rhs family protein
FYA11_RS08205	COG3272	Protein of unknown function (DUF1722)
FYA11_RS08210	COG0415	Belongs to the DNA photolyase family
FYA11_RS08215	COG3104	oligopeptide transport
FYA11_RS08220	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
FYA11_RS08225	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
FYA11_RS08230	COG1984	allophanate hydrolase subunit 2
FYA11_RS08245	COG3180	Ammonia monooxygenase
FYA11_RS08250	COG3539	Fimbrial protein
FYA11_RS08255	COG3121	Chaperone
FYA11_RS08260	COG3188	usher protein
FYA11_RS08265	COG3539	Fimbrial protein
FYA11_RS08270	COG0372	Belongs to the citrate synthase family
FYA11_RS08280	COG2009	succinate dehydrogenase
FYA11_RS08285	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
FYA11_RS08290	COG1053	succinate dehydrogenase
FYA11_RS08295	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
FYA11_RS08300	COG0567	Dehydrogenase, E1 component
FYA11_RS08305	COG0508	dehydrogenase complex catalyzes the overall conversion of
FYA11_RS08315	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
FYA11_RS08320	COG2188	Transcriptional regulator
FYA11_RS08325	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS08325	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FYA11_RS08325	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FYA11_RS08330	COG0383	alpha-mannosidase activity
FYA11_RS08340	COG1271	oxidase subunit
FYA11_RS08345	COG1294	oxidase, subunit
FYA11_RS08350	COG4890	Cyd operon protein YbgT
FYA11_RS08355	COG3790	cyd operon protein YbgE
FYA11_RS08360	COG0824	Thioesterase
FYA11_RS08365	COG0811	peptide transport
FYA11_RS08370	COG0848	biopolymer transport protein
FYA11_RS08375	COG3064	Membrane
FYA11_RS08385	COG2885	chlorophyll binding
FYA11_RS08390	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
FYA11_RS08440	COG3201	nicotinamide mononucleotide transporter
FYA11_RS08445	COG1230	cation diffusion facilitator family transporter
FYA11_RS08455	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FYA11_RS08465	COG2017	converts alpha-aldose to the beta-anomer
FYA11_RS08475	COG1085	galactose-1-phosphate uridylyltransferase
FYA11_RS08480	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FYA11_RS08485	COG1119	ATPase activity
FYA11_RS08490	COG3585	molybdate ion transport
FYA11_RS08490	COG2005	Transcriptional regulator
FYA11_RS08500	COG0725	ABC transporter, periplasmic molybdate-binding protein
FYA11_RS08505	COG4149	molybdate abc transporter
FYA11_RS08510	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
FYA11_RS08515	COG0561	phosphatase activity
FYA11_RS08525	COG0583	DNA-binding transcription factor activity
FYA11_RS08530	COG2828	Protein conserved in bacteria
FYA11_RS08535	COG0471	metal ion transport
FYA11_RS08540	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FYA11_RS08545	COG4677	pectinesterase activity
FYA11_RS08550	COG0582	viral genome integration into host DNA
FYA11_RS08720	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
FYA11_RS08755	COG5562	phage envelope protein
FYA11_RS08770	COG4220	transposase activity
FYA11_RS08790	COG1030	water channel activity
FYA11_RS08840	COG1196	nuclear chromosome segregation
FYA11_RS08875	COG5301	cellulose 1,4-beta-cellobiosidase activity
FYA11_RS08880	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
FYA11_RS08900	COG1881	PFAM PEBP family protein
FYA11_RS08905	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYA11_RS08920	COG2226	methyltransferase
FYA11_RS08925	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
FYA11_RS08935	COG0391	Required for morphogenesis under gluconeogenic growth conditions
FYA11_RS08945	COG0521	Mo-molybdopterin cofactor biosynthetic process
FYA11_RS08955	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
FYA11_RS08960	COG0314	molybdopterin synthase activity
FYA11_RS08965	COG0670	Belongs to the BI1 family
FYA11_RS08970	COG0670	Belongs to the BI1 family
FYA11_RS08975	COG0392	lysyltransferase activity
FYA11_RS08980	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FYA11_RS08985	COG3568	Endonuclease Exonuclease Phosphatase
FYA11_RS08995	COG0842	Transport permease protein
FYA11_RS09000	COG0842	Transport permease protein
FYA11_RS09005	COG1131	(ABC) transporter
FYA11_RS09015	COG1309	transcriptional regulator
FYA11_RS09020	COG0513	Belongs to the DEAD box helicase family
FYA11_RS09025	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
FYA11_RS09030	COG1199	ATP-dependent helicase activity
FYA11_RS09035	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
FYA11_RS09040	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FYA11_RS09050	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
FYA11_RS09060	COG4774	siderophore transport
FYA11_RS09075	COG0668	transmembrane transport
FYA11_RS09080	COG1126	abc transporter atp-binding protein
FYA11_RS09085	COG0765	amino acid transport
FYA11_RS09090	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA11_RS09100	COG5006	permease, DMT superfamily
FYA11_RS09110	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
FYA11_RS09115	COG2194	sulfuric ester hydrolase activity
FYA11_RS09125	COG1321	iron dependent repressor
FYA11_RS09130	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FYA11_RS09135	COG1376	ErfK ybiS ycfS ynhG family protein
FYA11_RS09140	COG0488	(ABC) transporter
FYA11_RS09150	COG0561	phosphatase activity
FYA11_RS09155	COG1882	Formate acetyltransferase
FYA11_RS09160	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
FYA11_RS09165	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
FYA11_RS09170	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FYA11_RS09175	COG0303	'Molybdopterin
FYA11_RS09180	COG1446	asparaginase
FYA11_RS09185	COG4172	Belongs to the ABC transporter superfamily
FYA11_RS09190	COG0747	negative chemotaxis
FYA11_RS09200	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA11_RS09205	COG2200	EAL domain
FYA11_RS09210	COG2199	diguanylate cyclase activity
FYA11_RS09225	COG2133	pyrroloquinoline quinone binding
FYA11_RS09230	COG0625	glutathione transferase activity
FYA11_RS09235	COG1686	Belongs to the peptidase S11 family
FYA11_RS09240	COG1349	DNA-binding transcription factor activity
FYA11_RS09245	COG0671	phosphoesterase, PA-phosphatase related
FYA11_RS09250	COG2814	Major facilitator Superfamily
FYA11_RS09260	COG0561	phosphatase activity
FYA11_RS09265	COG0738	Major facilitator superfamily
FYA11_RS09270	COG3226	Transcriptional regulator
FYA11_RS09285	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FYA11_RS09295	COG0778	Nitroreductase
FYA11_RS09310	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FYA11_RS09315	COG3842	ATPase activity
FYA11_RS09320	COG1176	ABC-type spermidine putrescine transport system, permease component I
FYA11_RS09325	COG1177	transmembrane transport
FYA11_RS09340	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA11_RS09345	COG4160	amino acid transport
FYA11_RS09350	COG4215	(ABC) transporter
FYA11_RS09355	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA11_RS09360	COG1126	abc transporter atp-binding protein
FYA11_RS09375	COG3023	N-Acetylmuramoyl-L-alanine amidase
FYA11_RS09380	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FYA11_RS09385	COG0702	epimerase
FYA11_RS09390	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
FYA11_RS09395	COG0028	Belongs to the TPP enzyme family
FYA11_RS09400	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FYA11_RS09410	COG2431	L-lysine efflux transmembrane transporter activity
FYA11_RS09420	COG3593	DNA synthesis involved in DNA repair
FYA11_RS09425	COG2990	Protein conserved in bacteria
FYA11_RS09430	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYA11_RS09435	COG0577	efflux transmembrane transporter activity
FYA11_RS09435	COG1136	(ABC) transporter
FYA11_RS09440	COG1278	Cold shock
FYA11_RS09450	COG0542	response to heat
FYA11_RS09475	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
FYA11_RS09480	COG4988	ABC transporter
FYA11_RS09485	COG0492	ferredoxin-NADP+ reductase activity
FYA11_RS09490	COG1522	sequence-specific DNA binding
FYA11_RS09495	COG1674	ftsk spoiiie
FYA11_RS09495	COG1178	ABC-type Fe3 transport system permease component
FYA11_RS09505	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
FYA11_RS09515	COG0243	molybdopterin cofactor binding
FYA11_RS09520	COG0437	4 iron, 4 sulfur cluster binding
FYA11_RS09525	COG3302	dmso reductase anchor subunit
FYA11_RS09530	COG1335	isochorismatase
FYA11_RS09540	COG0531	amino acid
FYA11_RS09545	COG0583	DNA-binding transcription factor activity
FYA11_RS09550	COG2249	NAD(P)H dehydrogenase (quinone) activity
FYA11_RS09555	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
FYA11_RS09560	COG1882	Formate acetyltransferase
FYA11_RS09565	COG2116	formate transmembrane transporter activity
FYA11_RS09570	COG1944	ATP diphosphatase activity
FYA11_RS09575	COG2323	membrane
FYA11_RS09590	COG0501	Belongs to the peptidase M48B family
FYA11_RS09600	COG0539	negative regulation of cytoplasmic translation
FYA11_RS09610	COG2333	competence protein COMEC
FYA11_RS09610	COG0658	competence protein
FYA11_RS09615	COG1132	(ABC) transporter
FYA11_RS09620	COG1663	tetraacyldisaccharide 4'-kinase activity
FYA11_RS09625	COG3214	Protein conserved in bacteria
FYA11_RS09640	COG3173	Aminoglycoside phosphotransferase
FYA11_RS09645	COG1434	Gram-negative-bacterium-type cell wall biogenesis
FYA11_RS09650	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
FYA11_RS09660	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
FYA11_RS09670	COG2989	Protein conserved in bacteria
FYA11_RS09675	COG3108	Peptidase M15
FYA11_RS09680	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FYA11_RS09685	COG1448	Aminotransferase
FYA11_RS09705	COG0308	aminopeptidase N
FYA11_RS09710	COG1116	anion transmembrane transporter activity
FYA11_RS09715	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYA11_RS09725	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FYA11_RS09730	COG0431	NADPH-dependent FMN reductase
FYA11_RS09735	COG3539	Fimbrial protein
FYA11_RS09740	COG3121	Chaperone
FYA11_RS09745	COG3188	usher protein
FYA11_RS09750	COG3539	Fimbrial protein
FYA11_RS09755	COG3539	Fimbrial protein
FYA11_RS09760	COG3539	Fimbrial protein
FYA11_RS09765	COG3121	Chaperone
FYA11_RS09780	COG0633	Ferredoxin
FYA11_RS09780	COG3217	Mosc domain protein beta barrel domain protein
FYA11_RS09790	COG0488	(ABC) transporter
FYA11_RS09795	COG2995	paraquat-inducible protein a
FYA11_RS09800	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
FYA11_RS09800	COG3008	intermembrane lipid transfer
FYA11_RS09805	COG3009	Protein conserved in bacteria
FYA11_RS09810	COG3130	regulation of translation
FYA11_RS09820	COG1067	ATP-dependent peptidase activity
FYA11_RS09830	COG2885	chlorophyll binding
FYA11_RS09830	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
FYA11_RS09840	COG3070	regulator of competence-specific genes
FYA11_RS09845	COG1289	transmembrane transporter activity
FYA11_RS09850	COG3304	Inner membrane component domain
FYA11_RS09855	COG0210	DNA helicase
FYA11_RS09870	COG1832	CoA-binding protein
FYA11_RS09885	COG1254	Belongs to the acylphosphatase family
FYA11_RS09890	COG2920	part of a sulfur-relay system
FYA11_RS09895	COG0670	Belongs to the BI1 family
FYA11_RS09905	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
FYA11_RS09910	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
FYA11_RS09915	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
FYA11_RS09920	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
FYA11_RS09925	COG1999	signal sequence binding
FYA11_RS09930	COG1773	rubredoxin
FYA11_RS09935	COG1271	oxidase subunit
FYA11_RS09940	COG1294	oxidase, subunit
FYA11_RS09955	COG3206	protein involved in exopolysaccharide biosynthesis
FYA11_RS09955	COG0489	protein tyrosine kinase activity
FYA11_RS09960	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FYA11_RS09965	COG1596	polysaccharide export
FYA11_RS09970	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYA11_RS09995	COG1278	Cold shock
FYA11_RS10000	COG1278	Cold shock
FYA11_RS10020	COG0348	domain, Protein
FYA11_RS10025	COG0784	Response regulator, receiver
FYA11_RS10025	COG2198	Histidine kinase
FYA11_RS10025	COG2205	protein histidine kinase activity
FYA11_RS10030	COG1879	ABC-type sugar transport system periplasmic component
FYA11_RS10035	COG0745	RESPONSE REGULATOR receiver
FYA11_RS10040	COG3005	denitrification pathway
FYA11_RS10045	COG0243	molybdopterin cofactor binding
FYA11_RS10050	COG3381	protein complex oligomerization
FYA11_RS10085	COG3729	General stress protein
FYA11_RS10090	COG2233	PERMEase
FYA11_RS10130	COG1309	transcriptional regulator
FYA11_RS10135	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FYA11_RS10135	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FYA11_RS10135	COG0506	proline dehydrogenase activity
FYA11_RS10145	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FYA11_RS10155	COG2822	iron ion transport
FYA11_RS10160	COG2837	iron assimilation
FYA11_RS10165	COG1702	phosphate starvation-inducible protein PhoH
FYA11_RS10170	COG3658	cytochrome
FYA11_RS10175	COG1215	transferase activity, transferring glycosyl groups
FYA11_RS10180	COG1649	PFAM Uncharacterised BCR, COG1649
FYA11_RS10180	COG0726	polysaccharide deacetylase
FYA11_RS10185	COG0457	Tetratricopeptide repeat
FYA11_RS10190	COG3706	GGDEF domain
FYA11_RS10245	COG3381	protein complex oligomerization
FYA11_RS10255	COG1462	curli production assembly transport component CsgG
FYA11_RS10270	COG2197	response regulator
FYA11_RS10295	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
FYA11_RS10300	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FYA11_RS10315	COG2943	transferase activity, transferring hexosyl groups
FYA11_RS10320	COG5645	(Lipo)protein
FYA11_RS10335	COG1560	Kdo2-lipid A biosynthetic process
FYA11_RS10345	COG2353	YceI-like domain
FYA11_RS10350	COG3038	cytochrome b561
FYA11_RS10385	COG2999	glutathione oxidoreductase activity
FYA11_RS10395	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FYA11_RS10405	COG0673	inositol 2-dehydrogenase activity
FYA11_RS10410	COG0728	peptidoglycan biosynthetic process
FYA11_RS10415	COG3418	PFAM FlgN family protein
FYA11_RS10420	COG2747	anti-sigma28 factor FlgM
FYA11_RS10425	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
FYA11_RS10430	COG1815	bacterial-type flagellum-dependent cell motility
FYA11_RS10435	COG1558	bacterial-type flagellum-dependent cell motility
FYA11_RS10440	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
FYA11_RS10445	COG1749	Flagellar hook protein flgE
FYA11_RS10450	COG4787	bacterial-type flagellum-dependent cell motility
FYA11_RS10455	COG4786	Flagellar basal body rod
FYA11_RS10470	COG3951	Flagellar rod assembly protein muramidase FlgJ
FYA11_RS10470	COG1705	Flagellar rod assembly protein muramidase FlgJ
FYA11_RS10475	COG1256	bacterial-type flagellum assembly
FYA11_RS10480	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FYA11_RS10485	COG1530	ribonuclease E activity
FYA11_RS10490	COG0564	pseudouridine synthase activity
FYA11_RS10495	COG0424	maF-like protein
FYA11_RS10500	COG1399	metal-binding, possibly nucleic acid-binding protein
FYA11_RS10520	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
FYA11_RS10525	COG1028	Short-chain dehydrogenase reductase Sdr
FYA11_RS10535	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FYA11_RS10540	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FYA11_RS10545	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
FYA11_RS10555	COG0470	DNA polymerase III
FYA11_RS10560	COG0084	hydrolase, TatD family'
FYA11_RS10565	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FYA11_RS10565	COG1263	PTS System
FYA11_RS10570	COG4773	Receptor
FYA11_RS10575	COG0537	adenosine 5'-monophosphoramidase activity
FYA11_RS10580	COG5633	Lipoprotein
FYA11_RS10585	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
FYA11_RS10605	COG1252	NADH dehydrogenase
FYA11_RS10610	COG3134	Outer membrane lipoprotein
FYA11_RS10615	COG1309	transcriptional regulator
FYA11_RS10625	COG1388	LysM domain
FYA11_RS10625	COG1376	ErfK ybiS ycfS ynhG family protein
FYA11_RS10630	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
FYA11_RS10635	COG4763	Acyl-transferase
FYA11_RS10640	COG4591	ABC-type transport system involved in lipoprotein release permease component
FYA11_RS10645	COG1136	(ABC) transporter
FYA11_RS10650	COG4591	ABC-type transport system involved in lipoprotein release permease component
FYA11_RS10660	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
FYA11_RS10665	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
FYA11_RS10675	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FYA11_RS10680	COG1177	transmembrane transport
FYA11_RS10690	COG3842	ATPase activity
FYA11_RS10700	COG2850	peptidyl-arginine hydroxylation
FYA11_RS10705	COG2205	protein histidine kinase activity
FYA11_RS10710	COG0745	RESPONSE REGULATOR receiver
FYA11_RS10715	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
FYA11_RS10735	COG1187	pseudouridine synthase activity
FYA11_RS10740	COG0538	isocitrate dehydrogenase activity
FYA11_RS10745	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
FYA11_RS10760	COG0582	viral genome integration into host DNA
FYA11_RS10785	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
FYA11_RS10790	COG4197	protein conserved in bacteria, prophage-related
FYA11_RS10805	COG4626	Terminase
FYA11_RS10805	COG1802	Transcriptional regulator
FYA11_RS10815	COG4695	Portal protein
FYA11_RS10820	COG3299	homolog of phage Mu protein gp47
FYA11_RS10825	COG3778	Protein conserved in bacteria
FYA11_RS10840	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
FYA11_RS10850	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
FYA11_RS10855	COG1403	HNH endonuclease
FYA11_RS10860	COG0538	isocitrate dehydrogenase activity
FYA11_RS10875	COG5562	phage envelope protein
FYA11_RS10880	COG0789	Transcriptional regulator
FYA11_RS10885	COG2200	EAL domain
FYA11_RS10910	COG2200	EAL domain
FYA11_RS10965	COG2894	cell division
FYA11_RS10990	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYA11_RS11005	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
FYA11_RS11010	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FYA11_RS11015	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
FYA11_RS11030	COG2719	SpoVR family
FYA11_RS11040	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FYA11_RS11050	COG1619	proteins homologs of microcin C7 resistance protein MccF
FYA11_RS11060	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
FYA11_RS11065	COG2261	transglycosylase associated protein
FYA11_RS11080	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
FYA11_RS11080	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS11080	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
FYA11_RS11085	COG1461	Dihydroxyacetone kinase
FYA11_RS11090	COG2376	Dihydroxyacetone kinase
FYA11_RS11095	COG3284	Transcriptional regulator
FYA11_RS11100	COG3468	outer membrane autotransporter barrel domain protein
FYA11_RS11105	COG0012	GTP binding
FYA11_RS11120	COG0659	secondary active sulfate transmembrane transporter activity
FYA11_RS11125	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
FYA11_RS11150	COG2890	protein-(glutamine-N5) methyltransferase activity
FYA11_RS11155	COG3094	Invasion gene expression up-regulator, SirB
FYA11_RS11160	COG2912	Transglutaminase-like superfamily
FYA11_RS11200	COG0387	Pfam Sodium calcium exchanger
FYA11_RS11205	COG4572	Cation transport regulator
FYA11_RS11210	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
FYA11_RS11215	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
FYA11_RS11220	COG4932	domain protein
FYA11_RS11225	COG2197	response regulator
FYA11_RS11230	COG3850	Histidine kinase
FYA11_RS11235	COG2223	nitrite transmembrane transporter activity
FYA11_RS11240	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
FYA11_RS11245	COG1140	nitrate reductase beta subunit
FYA11_RS11250	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
FYA11_RS11255	COG2181	nitrate reductase activity
FYA11_RS11290	COG0788	formyltetrahydrofolate deformylase activity
FYA11_RS11300	COG1752	Esterase of the alpha-beta hydrolase superfamily
FYA11_RS11305	COG0745	RESPONSE REGULATOR receiver
FYA11_RS11310	COG1210	Utp--glucose-1-phosphate uridylyltransferase
FYA11_RS11320	COG1435	thymidine kinase activity
FYA11_RS11330	COG1454	alcohol dehydrogenase
FYA11_RS11330	COG1012	belongs to the aldehyde dehydrogenase family
FYA11_RS11335	COG2095	MarC family integral membrane protein
FYA11_RS11340	COG4166	transmembrane transport
FYA11_RS11345	COG0601	transmembrane transport
FYA11_RS11350	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA11_RS11355	COG0444	Belongs to the ABC transporter superfamily
FYA11_RS11360	COG4608	Belongs to the ABC transporter superfamily
FYA11_RS11380	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FYA11_RS11385	COG2350	Protein conserved in bacteria
FYA11_RS11390	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
FYA11_RS11395	COG1607	acyl-coa hydrolase
FYA11_RS11415	COG3047	cAMP biosynthetic process
FYA11_RS11420	COG3685	Protein conserved in bacteria
FYA11_RS11425	COG3685	Protein conserved in bacteria
FYA11_RS11430	COG3729	General stress protein
FYA11_RS11445	COG0134	indole-3-glycerol-phosphate synthase activity
FYA11_RS11445	COG0135	phosphoribosylanthranilate isomerase activity
FYA11_RS11450	COG0512	Glutamine amidotransferase of anthranilate synthase
FYA11_RS11450	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
FYA11_RS11455	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
FYA11_RS11465	COG0613	PHP domain protein
FYA11_RS11470	COG0009	L-threonylcarbamoyladenylate synthase
FYA11_RS11475	COG4907	membrane protein (DUF2207)
FYA11_RS11480	COG1187	pseudouridine synthase activity
FYA11_RS11485	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
FYA11_RS11490	COG1028	Short-chain dehydrogenase reductase Sdr
FYA11_RS11495	COG0616	signal peptide processing
FYA11_RS11505	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
FYA11_RS11510	COG0583	DNA-binding transcription factor activity
FYA11_RS11530	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FYA11_RS11540	COG0671	phosphoesterase, PA-phosphatase related
FYA11_RS11545	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
FYA11_RS11550	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
FYA11_RS11560	COG0023	Translation Initiation Factor
FYA11_RS11570	COG1349	DNA-binding transcription factor activity
FYA11_RS11580	COG5001	Diguanylate cyclase
FYA11_RS11595	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYA11_RS11595	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYA11_RS11600	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
FYA11_RS11605	COG2852	Protein conserved in bacteria
FYA11_RS11610	COG4172	Belongs to the ABC transporter superfamily
FYA11_RS11615	COG4172	Belongs to the ABC transporter superfamily
FYA11_RS11620	COG4171	peptide transport system, permease
FYA11_RS11625	COG4168	peptide transport system, permease
FYA11_RS11630	COG4166	transmembrane transport
FYA11_RS11640	COG0531	amino acid
FYA11_RS11650	COG0174	glutamine synthetase
FYA11_RS11655	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
FYA11_RS11660	COG1917	Cupin 2, conserved barrel domain protein
FYA11_RS11660	COG1396	sequence-specific DNA binding
FYA11_RS11665	COG1012	belongs to the aldehyde dehydrogenase family
FYA11_RS11670	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYA11_RS11675	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FYA11_RS11680	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
FYA11_RS11685	COG1842	Phage shock protein A
FYA11_RS11695	COG1983	PspC domain protein
FYA11_RS11705	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FYA11_RS11710	COG0366	Alpha amylase catalytic
FYA11_RS11715	COG1653	transport
FYA11_RS11720	COG1175	transmembrane transport
FYA11_RS11725	COG0395	ABC-type sugar transport system, permease component
FYA11_RS11730	COG1063	alcohol dehydrogenase
FYA11_RS11735	COG1082	Xylose isomerase domain protein TIM barrel
FYA11_RS11740	COG0673	inositol 2-dehydrogenase activity
FYA11_RS11745	COG1554	hydrolase, family 65, central catalytic
FYA11_RS11750	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FYA11_RS11765	COG1609	Transcriptional regulator
FYA11_RS11770	COG3106	COG3106 Predicted ATPase
FYA11_RS11780	COG3283	Transcriptional regulator of aromatic amino acids metabolism
FYA11_RS11785	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
FYA11_RS11790	COG4948	Mandelate Racemase Muconate Lactonizing
FYA11_RS11795	COG2866	Carboxypeptidase
FYA11_RS11810	COG1073	alpha beta
FYA11_RS11815	COG0583	DNA-binding transcription factor activity
FYA11_RS11820	COG4166	transmembrane transport
FYA11_RS11825	COG0668	transmembrane transport
FYA11_RS11835	COG3182	Iron-regulated membrane protein
FYA11_RS11840	COG0589	response to stress
FYA11_RS11845	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FYA11_RS11850	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FYA11_RS11855	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
FYA11_RS11860	COG1473	amidohydrolase
FYA11_RS11865	COG1473	amidohydrolase
FYA11_RS11870	COG0583	DNA-binding transcription factor activity
FYA11_RS11875	COG2840	Smr protein MutS2
FYA11_RS11880	COG3706	GGDEF domain
FYA11_RS11890	COG0513	Belongs to the DEAD box helicase family
FYA11_RS11900	COG0582	viral genome integration into host DNA
FYA11_RS11920	COG3723	Recombinational DNA repair protein, rece pathway
FYA11_RS11925	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FYA11_RS11965	COG4197	protein conserved in bacteria, prophage-related
FYA11_RS11975	COG3756	Protein conserved in bacteria
FYA11_RS11980	COG1484	DNA-dependent DNA replication
FYA11_RS11985	COG1846	Transcriptional regulator
FYA11_RS11995	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FYA11_RS12000	COG1475	DNA binding
FYA11_RS12025	COG3039	Transposase
FYA11_RS12035	COG5301	cellulose 1,4-beta-cellobiosidase activity
FYA11_RS12040	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
FYA11_RS12045	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
FYA11_RS12060	COG0589	response to stress
FYA11_RS12065	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYA11_RS12070	COG0674	pyruvate-flavodoxin oxidoreductase activity
FYA11_RS12070	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYA11_RS12070	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
FYA11_RS12070	COG1013	pyruvate-flavodoxin oxidoreductase activity
FYA11_RS12075	COG3042	response to heat
FYA11_RS12080	COG3187	Heat shock protein
FYA11_RS12085	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FYA11_RS12090	COG2911	Protein conserved in bacteria
FYA11_RS12100	COG3784	Protein of unknown function (DUF1318)
FYA11_RS12105	COG2207	Transcriptional regulator
FYA11_RS12110	COG1012	belongs to the aldehyde dehydrogenase family
FYA11_RS12115	COG3733	amine oxidase
FYA11_RS12120	COG1012	belongs to the aldehyde dehydrogenase family
FYA11_RS12120	COG2030	dehydratase
FYA11_RS12125	COG3396	Phenylacetate-CoA oxygenase
FYA11_RS12130	COG3460	Phenylacetate-CoA oxygenase
FYA11_RS12135	COG3396	Phenylacetate-CoA oxygenase
FYA11_RS12140	COG2151	metal-sulfur cluster biosynthetic enzyme
FYA11_RS12145	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FYA11_RS12150	COG1024	Enoyl-CoA hydratase
FYA11_RS12155	COG1024	Enoyl-CoA hydratase
FYA11_RS12160	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYA11_RS12165	COG2050	protein possibly involved in aromatic compounds catabolism
FYA11_RS12170	COG0183	Belongs to the thiolase family
FYA11_RS12175	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
FYA11_RS12180	COG3327	negative regulation of DNA-templated transcription, initiation
FYA11_RS12185	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
FYA11_RS12210	COG2826	transposase and inactivated derivatives, IS30 family
FYA11_RS12225	COG0667	Aldo Keto reductase
FYA11_RS12235	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
FYA11_RS12240	COG4589	Belongs to the CDS family
FYA11_RS12245	COG2267	carboxylic ester hydrolase activity
FYA11_RS12250	COG2453	phosphatase
FYA11_RS12250	COG0671	phosphoesterase, PA-phosphatase related
FYA11_RS12260	COG1643	Atp-dependent helicase
FYA11_RS12265	COG1434	Gram-negative-bacterium-type cell wall biogenesis
FYA11_RS12270	COG1012	belongs to the aldehyde dehydrogenase family
FYA11_RS12280	COG3038	cytochrome b561
FYA11_RS12295	COG0840	transmembrane signaling receptor activity
FYA11_RS12300	COG0583	DNA-binding transcription factor activity
FYA11_RS12305	COG5383	Protein conserved in bacteria
FYA11_RS12315	COG2841	Protein conserved in bacteria
FYA11_RS12320	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FYA11_RS12325	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
FYA11_RS12330	COG1275	C4-dicarboxylate transporter malic acid transport protein
FYA11_RS12335	COG0500	methyltransferase
FYA11_RS12350	COG0675	Transposase, IS605 OrfB family
FYA11_RS12355	COG3135	benzoate transporter
FYA11_RS12360	COG1396	sequence-specific DNA binding
FYA11_RS12365	COG0826	peptidase U32
FYA11_RS12375	COG1724	mRNA binding
FYA11_RS12380	COG1598	PFAM Uncharacterised protein family UPF0150
FYA11_RS12385	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYA11_RS12390	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FYA11_RS12395	COG3842	ATPase activity
FYA11_RS12400	COG1176	ABC-type spermidine putrescine transport system, permease component I
FYA11_RS12405	COG1177	transmembrane transport
FYA11_RS12430	COG3238	Protein conserved in bacteria
FYA11_RS12435	COG1247	-acetyltransferase
FYA11_RS12440	COG2130	NADP-dependent
FYA11_RS12445	COG1802	Transcriptional regulator
FYA11_RS12450	COG4772	TonB-dependent receptor
FYA11_RS12455	COG3391	amine dehydrogenase activity
FYA11_RS12460	COG1113	amino acid transport
FYA11_RS12465	COG0625	glutathione transferase activity
FYA11_RS12480	COG3209	COG3209 Rhs family protein
FYA11_RS12500	COG5433	transposase activity
FYA11_RS12510	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FYA11_RS12515	COG2162	N-hydroxyarylamine O-acetyltransferase activity
FYA11_RS12520	COG0384	phenazine biosynthesis protein PhzF
FYA11_RS12525	COG2181	nitrate reductase activity
FYA11_RS12530	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
FYA11_RS12535	COG1140	nitrate reductase beta subunit
FYA11_RS12540	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
FYA11_RS12545	COG2223	nitrite transmembrane transporter activity
FYA11_RS12555	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYA11_RS12560	COG0697	spore germination
FYA11_RS12570	COG0437	4 iron, 4 sulfur cluster binding
FYA11_RS12575	COG2864	formate dehydrogenase
FYA11_RS12580	COG3093	addiction module antidote protein HigA
FYA11_RS12585	COG1064	alcohol dehydrogenase
FYA11_RS12605	COG1764	response to oxidative stress
FYA11_RS12610	COG4608	Belongs to the ABC transporter superfamily
FYA11_RS12615	COG0444	Belongs to the ABC transporter superfamily
FYA11_RS12620	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA11_RS12625	COG0601	transmembrane transport
FYA11_RS12630	COG0747	negative chemotaxis
FYA11_RS12635	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
FYA11_RS12640	COG2202	Pas domain
FYA11_RS12640	COG2199	diguanylate cyclase activity
FYA11_RS12640	COG2200	EAL domain
FYA11_RS12645	COG3706	GGDEF domain
FYA11_RS12650	COG1649	PFAM Uncharacterised BCR, COG1649
FYA11_RS12655	COG0531	amino acid
FYA11_RS12660	COG0076	glutamate decarboxylase activity
FYA11_RS12665	COG0612	Peptidase, M16
FYA11_RS12670	COG4771	TonB-dependent receptor
FYA11_RS12675	COG4178	(ABC) transporter
FYA11_RS12685	COG0641	radical SAM
FYA11_RS12690	COG3119	arylsulfatase activity
FYA11_RS12695	COG2207	Transcriptional regulator
FYA11_RS12705	COG0243	molybdopterin cofactor binding
FYA11_RS12710	COG3539	Fimbrial protein
FYA11_RS12715	COG3539	Fimbrial protein
FYA11_RS12720	COG3539	Fimbrial protein
FYA11_RS12735	COG3550	peptidyl-serine autophosphorylation
FYA11_RS12740	COG1396	sequence-specific DNA binding
FYA11_RS12805	COG3781	membrane
FYA11_RS12815	COG2199	diguanylate cyclase activity
FYA11_RS12825	COG2066	Belongs to the glutaminase family
FYA11_RS12830	COG1012	belongs to the aldehyde dehydrogenase family
FYA11_RS12835	COG0583	DNA-binding transcription factor activity
FYA11_RS12855	COG1846	Transcriptional regulator
FYA11_RS12860	COG4977	sequence-specific DNA binding
FYA11_RS12870	COG0697	spore germination
FYA11_RS12875	COG2814	Major facilitator Superfamily
FYA11_RS12885	COG3706	GGDEF domain
FYA11_RS12890	COG3111	PFAM Bacterial OB fold (BOF) protein
FYA11_RS12895	COG1546	Belongs to the CinA family
FYA11_RS12900	COG0339	signal peptide processing
FYA11_RS12905	COG4221	oxidoreductase activity
FYA11_RS12910	COG1802	Transcriptional regulator
FYA11_RS12920	COG0246	Mannitol dehydrogenase
FYA11_RS12925	COG0477	Major facilitator Superfamily
FYA11_RS12940	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
FYA11_RS12945	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
FYA11_RS12950	COG5301	cellulose 1,4-beta-cellobiosidase activity
FYA11_RS12955	COG4220	transposase activity
FYA11_RS12965	COG5562	phage envelope protein
FYA11_RS12990	COG1278	Cold shock
FYA11_RS13000	COG3772	lysozyme
FYA11_RS13015	COG1278	Cold shock
FYA11_RS13020	COG1278	Cold shock
FYA11_RS13030	COG0484	heat shock protein binding
FYA11_RS13035	COG1403	HNH endonuclease
FYA11_RS13055	COG2026	Addiction module toxin, RelE StbE family
FYA11_RS13060	COG3077	Addiction module antitoxin, RelB DinJ family
FYA11_RS13075	COG2801	Transposase and inactivated derivatives
FYA11_RS13090	COG1396	sequence-specific DNA binding
FYA11_RS13140	COG1063	alcohol dehydrogenase
FYA11_RS13145	COG4948	Mandelate Racemase Muconate Lactonizing
FYA11_RS13160	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FYA11_RS13175	COG0243	molybdopterin cofactor binding
FYA11_RS13180	COG0243	molybdopterin cofactor binding
FYA11_RS13185	COG0437	4 iron, 4 sulfur cluster binding
FYA11_RS13190	COG3302	dmso reductase anchor subunit
FYA11_RS13195	COG3381	protein complex oligomerization
FYA11_RS13205	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
FYA11_RS13210	COG1940	carbohydrate kinase activity
FYA11_RS13215	COG0583	DNA-binding transcription factor activity
FYA11_RS13220	COG2814	Major facilitator Superfamily
FYA11_RS13235	COG3591	Belongs to the peptidase S1B family
FYA11_RS13255	COG0628	permease
FYA11_RS13260	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
FYA11_RS13265	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
FYA11_RS13275	COG0531	amino acid
FYA11_RS13285	COG3136	membrane protein required for alginate biosynthesis
FYA11_RS13290	COG0745	RESPONSE REGULATOR receiver
FYA11_RS13295	COG2205	protein histidine kinase activity
FYA11_RS13305	COG0114	fumarate hydratase activity
FYA11_RS13310	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
FYA11_RS13310	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
FYA11_RS13315	COG1482	cell wall glycoprotein biosynthetic process
FYA11_RS13320	COG5339	Protein conserved in bacteria
FYA11_RS13330	COG2211	Major facilitator Superfamily
FYA11_RS13335	COG3250	beta-galactosidase activity
FYA11_RS13340	COG1309	transcriptional regulator
FYA11_RS13345	COG1028	Short-chain dehydrogenase reductase Sdr
FYA11_RS13350	COG1609	Transcriptional regulator
FYA11_RS13355	COG1263	PTS System
FYA11_RS13355	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FYA11_RS13360	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
FYA11_RS13370	COG0673	inositol 2-dehydrogenase activity
FYA11_RS13410	COG4659	FMN binding
FYA11_RS13420	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
FYA11_RS13425	COG3104	oligopeptide transport
FYA11_RS13430	COG0625	glutathione transferase activity
FYA11_RS13435	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
FYA11_RS13450	COG3895	Periplasmic Protein
FYA11_RS13460	COG3133	Outer membrane lipoprotein
FYA11_RS13475	COG1566	PFAM secretion protein HlyD family protein
FYA11_RS13480	COG1289	transmembrane transporter activity
FYA11_RS13485	COG2032	superoxide dismutase activity
FYA11_RS13490	COG4989	oxidoreductase activity
FYA11_RS13495	COG3313	Fe-S protein
FYA11_RS13500	COG1309	transcriptional regulator
FYA11_RS13505	COG1902	pentaerythritol trinitrate reductase activity
FYA11_RS13510	COG0346	lactoylglutathione lyase activity
FYA11_RS13515	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FYA11_RS13520	COG1201	RNA secondary structure unwinding
FYA11_RS13525	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
FYA11_RS13530	COG0791	NLP P60 protein
FYA11_RS13535	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FYA11_RS13540	COG2814	Major facilitator Superfamily
FYA11_RS13555	COG0583	DNA-binding transcription factor activity
FYA11_RS13560	COG2814	Major facilitator Superfamily
FYA11_RS13565	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
FYA11_RS13570	COG0307	riboflavin synthase, alpha
FYA11_RS13580	COG3468	outer membrane autotransporter barrel domain protein
FYA11_RS13600	COG4529	Protein conserved in bacteria
FYA11_RS13610	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
FYA11_RS13615	COG0437	4 iron, 4 sulfur cluster binding
FYA11_RS13625	COG2414	aldehyde ferredoxin oxidoreductase
FYA11_RS13630	COG0437	4 iron, 4 sulfur cluster binding
FYA11_RS13640	COG0469	pyruvate kinase activity
FYA11_RS13645	COG4238	major outer membrane lipoprotein
FYA11_RS13650	COG1376	ErfK ybiS ycfS ynhG family protein
FYA11_RS13665	COG0719	Fe-S assembly protein
FYA11_RS13670	COG0396	ATPase activity
FYA11_RS13675	COG0719	Fe-S assembly protein
FYA11_RS13680	COG0316	Belongs to the HesB IscA family
FYA11_RS13690	COG2050	protein possibly involved in aromatic compounds catabolism
FYA11_RS13695	COG0277	FAD linked oxidase domain protein
FYA11_RS13695	COG0247	lactate metabolic process
FYA11_RS13700	COG0628	permease
FYA11_RS13715	COG0738	Major facilitator superfamily
FYA11_RS13720	COG2271	Major facilitator Superfamily
FYA11_RS13735	COG4670	ketone body catabolic process
FYA11_RS13740	COG1960	acyl-CoA dehydrogenase activity
FYA11_RS13745	COG1917	Cupin 2, conserved barrel domain protein
FYA11_RS13745	COG2207	Transcriptional regulator
FYA11_RS13750	COG2086	electron transfer activity
FYA11_RS13755	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
FYA11_RS13760	COG0644	oxidoreductase
FYA11_RS13765	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
FYA11_RS13770	COG0318	PFAM AMP-dependent synthetase and ligase
FYA11_RS13775	COG0574	Belongs to the PEP-utilizing enzyme family
FYA11_RS13775	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
FYA11_RS13785	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FYA11_RS13790	COG4256	Hemin uptake protein
FYA11_RS13800	COG2200	EAL domain
FYA11_RS13805	COG0791	NLP P60 protein
FYA11_RS13815	COG0386	Belongs to the glutathione peroxidase family
FYA11_RS13830	COG0072	phenylalanine-tRNA ligase activity
FYA11_RS13830	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FYA11_RS13875	COG3137	Salt-induced outer membrane protein
FYA11_RS13880	COG1105	Belongs to the carbohydrate kinase PfkB family
FYA11_RS13890	COG3001	Fructosamine kinase
FYA11_RS13900	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FYA11_RS13905	COG1988	membrane-bound metal-dependent
FYA11_RS13910	COG1823	symporter activity
FYA11_RS13925	COG0753	catalase activity
FYA11_RS13935	COG1486	melibiose metabolic process
FYA11_RS13940	COG2169	Transcriptional regulator
FYA11_RS13940	COG1917	Cupin 2, conserved barrel domain protein
FYA11_RS13945	COG1447	Phosphotransferase system cellobiose-specific component IIA
FYA11_RS13950	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FYA11_RS13955	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FYA11_RS13960	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYA11_RS13970	COG0322	excinuclease ABC activity
FYA11_RS13980	COG3678	ATP-independent chaperone mediated protein folding
FYA11_RS14010	COG0708	Exodeoxyribonuclease III
FYA11_RS14015	COG0398	Pfam SNARE associated Golgi protein
FYA11_RS14025	COG0398	Pfam SNARE associated Golgi protein
FYA11_RS14030	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYA11_RS14035	COG4134	Bacterial extracellular solute-binding protein
FYA11_RS14040	COG4135	transport system, permease component
FYA11_RS14045	COG4136	ATPase activity
FYA11_RS14050	COG2897	thiosulfate sulfurtransferase activity
FYA11_RS14055	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
FYA11_RS14060	COG0494	nUDIX hydrolase
FYA11_RS14070	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FYA11_RS14080	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
FYA11_RS14090	COG0778	Nitroreductase
FYA11_RS14095	COG0616	signal peptide processing
FYA11_RS14100	COG0252	asparaginase activity
FYA11_RS14105	COG1335	isochorismatase
FYA11_RS14110	COG2814	Major facilitator Superfamily
FYA11_RS14115	COG1349	DNA-binding transcription factor activity
FYA11_RS14120	COG0667	Aldo Keto reductase
FYA11_RS14125	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYA11_RS14130	COG0191	fructose-bisphosphate aldolase activity
FYA11_RS14135	COG1063	alcohol dehydrogenase
FYA11_RS14140	COG2271	Major facilitator Superfamily
FYA11_RS14145	COG1063	alcohol dehydrogenase
FYA11_RS14150	COG3139	Protein of unknown function (DUF1315)
FYA11_RS14160	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FYA11_RS14165	COG0676	glucose-6-phosphate 1-epimerase activity
FYA11_RS14170	COG0656	L-ascorbic acid biosynthetic process
FYA11_RS14175	COG3713	MltA-interacting MipA family protein
FYA11_RS14180	COG2766	serine protein kinase
FYA11_RS14190	COG2199	diguanylate cyclase activity
FYA11_RS14195	COG2199	diguanylate cyclase activity
FYA11_RS14200	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
FYA11_RS14215	COG2207	Transcriptional regulator
FYA11_RS14220	COG2807	transmembrane transport
FYA11_RS14225	COG3189	MarR family transcriptional regulator
FYA11_RS14230	COG3042	response to heat
FYA11_RS14235	COG2199	diguanylate cyclase activity
FYA11_RS14235	COG2203	Gaf domain
FYA11_RS14250	COG2261	transglycosylase associated protein
FYA11_RS14265	COG3385	transposase activity
FYA11_RS14270	COG3615	Tellurite resistance protein tehB
FYA11_RS14280	COG0583	DNA-binding transcription factor activity
FYA11_RS14285	COG0473	3-isopropylmalate dehydrogenase activity
FYA11_RS14290	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FYA11_RS14295	COG4638	Rieske (2fe-2S)
FYA11_RS14300	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FYA11_RS14305	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
FYA11_RS14310	COG0318	PFAM AMP-dependent synthetase and ligase
FYA11_RS14315	COG3065	identical protein binding
FYA11_RS14320	COG1214	PFAM Peptidase M22, glycoprotease
FYA11_RS14325	COG1199	ATP-dependent helicase activity
FYA11_RS14330	COG0251	oxidation-reduction process
FYA11_RS14345	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
FYA11_RS14355	COG1760	l-serine dehydratase
FYA11_RS14360	COG2200	EAL domain
FYA11_RS14365	COG1253	flavin adenine dinucleotide binding
FYA11_RS14370	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FYA11_RS14370	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS14375	COG3715	PTS system
FYA11_RS14380	COG3716	PTS system mannose fructose sorbose family IID component
FYA11_RS14395	COG2226	methyltransferase
FYA11_RS14425	COG1414	Transcriptional regulator
FYA11_RS14430	COG2814	Major facilitator Superfamily
FYA11_RS14440	COG0793	Belongs to the peptidase S41A family
FYA11_RS14450	COG1956	GAF domain-containing protein
FYA11_RS14455	COG2995	paraquat-inducible protein a
FYA11_RS14460	COG3008	intermembrane lipid transfer
FYA11_RS14480	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
FYA11_RS14490	COG1276	copper resistance
FYA11_RS14495	COG2372	response to copper ion
FYA11_RS14505	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FYA11_RS14510	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FYA11_RS14515	COG1770	oligopeptidase
FYA11_RS14520	COG2979	Protein of unknown function (DUF533)
FYA11_RS14530	COG3141	response to X-ray
FYA11_RS14540	COG0800	Aldolase
FYA11_RS14545	COG0129	dihydroxy-acid dehydratase activity
FYA11_RS14550	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
FYA11_RS14555	COG1737	Transcriptional regulator
FYA11_RS14560	COG0469	pyruvate kinase activity
FYA11_RS14565	COG1560	Kdo2-lipid A biosynthetic process
FYA11_RS14570	COG0739	heme binding
FYA11_RS14575	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
FYA11_RS14585	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FYA11_RS14615	COG0217	transcriptional regulatory protein
FYA11_RS14620	COG0494	nUDIX hydrolase
FYA11_RS14630	COG1335	isochorismatase
FYA11_RS14635	COG1801	Protein of unknown function DUF72
FYA11_RS14640	COG3788	relative of glutathione S-transferase, MAPEG superfamily
FYA11_RS14655	COG0243	molybdopterin cofactor binding
FYA11_RS14660	COG3005	denitrification pathway
FYA11_RS14670	COG3102	Protein conserved in bacteria
FYA11_RS14680	COG3755	Protein conserved in bacteria
FYA11_RS14690	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FYA11_RS14695	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FYA11_RS14700	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
FYA11_RS14705	COG0745	RESPONSE REGULATOR receiver
FYA11_RS14710	COG2201	protein-glutamate methylesterase activity
FYA11_RS14715	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FYA11_RS14720	COG0840	transmembrane signaling receptor activity
FYA11_RS14725	COG0840	transmembrane signaling receptor activity
FYA11_RS14730	COG0835	chemotaxis
FYA11_RS14740	COG1360	Flagellar Motor Protein
FYA11_RS14745	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
FYA11_RS14765	COG0589	response to stress
FYA11_RS14775	COG1877	trehalose-phosphatase activity
FYA11_RS14780	COG1172	Belongs to the binding-protein-dependent transport system permease family
FYA11_RS14785	COG1129	ABC transporter
FYA11_RS14790	COG1879	ABC-type sugar transport system periplasmic component
FYA11_RS14795	COG1528	Iron-storage protein
FYA11_RS14815	COG1528	Iron-storage protein
FYA11_RS14825	COG0814	amino acid
FYA11_RS14830	COG3318	Belongs to the UPF0149 family
FYA11_RS14830	COG3012	SEC-C Motif Domain Protein
FYA11_RS14860	COG2197	response regulator
FYA11_RS14875	COG2197	response regulator
FYA11_RS14880	COG1126	abc transporter atp-binding protein
FYA11_RS14885	COG0765	amino acid transport
FYA11_RS14895	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA11_RS14905	COG1191	sigma factor activity
FYA11_RS14910	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FYA11_RS14915	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
FYA11_RS14920	COG1516	flagellar protein fliS
FYA11_RS14930	COG0366	Alpha amylase catalytic
FYA11_RS14940	COG2391	methyltransferase activity
FYA11_RS14945	COG0425	Belongs to the sulfur carrier protein TusA family
FYA11_RS14950	COG2135	peptidase activity
FYA11_RS14955	COG0454	-acetyltransferase
FYA11_RS14980	COG1766	The M ring may be actively involved in energy transduction
FYA11_RS14985	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FYA11_RS14990	COG1317	bacterial-type flagellum organization
FYA11_RS14995	COG1157	protein secretion by the type III secretion system
FYA11_RS15000	COG2882	bacterial-type flagellum organization
FYA11_RS15005	COG3144	bacterial-type flagellum assembly
FYA11_RS15010	COG1580	Controls the rotational direction of flagella during chemotaxis
FYA11_RS15015	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FYA11_RS15020	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FYA11_RS15025	COG3190	flagellar
FYA11_RS15030	COG1338	Plays a role in the flagellum-specific transport system
FYA11_RS15035	COG1987	bacterial-type flagellum assembly
FYA11_RS15040	COG1684	flagellar biosynthetic protein fliR
FYA11_RS15045	COG2197	response regulator
FYA11_RS15070	COG3706	GGDEF domain
FYA11_RS15075	COG5475	Uncharacterized small protein (DUF2158)
FYA11_RS15080	COG2354	Protein conserved in bacteria
FYA11_RS15085	COG0697	spore germination
FYA11_RS15090	COG3727	T/G mismatch-specific endonuclease activity
FYA11_RS15095	COG0270	DNA (cytosine-5-)-methyltransferase activity
FYA11_RS15100	COG1418	mRNA catabolic process
FYA11_RS15125	COG2205	protein histidine kinase activity
FYA11_RS15130	COG0745	RESPONSE REGULATOR receiver
FYA11_RS15135	COG2351	hydroxyisourate hydrolase activity
FYA11_RS15150	COG3443	Belongs to the bacterial solute-binding protein 9 family
FYA11_RS15155	COG3038	cytochrome b561
FYA11_RS15175	COG1470	cell adhesion involved in biofilm formation
FYA11_RS15175	COG1388	LysM domain
FYA11_RS15185	COG0477	Major facilitator Superfamily
FYA11_RS15190	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FYA11_RS15195	COG0217	transcriptional regulatory protein
FYA11_RS15205	COG0534	Mate efflux family protein
FYA11_RS15215	COG0583	DNA-binding transcription factor activity
FYA11_RS15220	COG0583	DNA-binding transcription factor activity
FYA11_RS15230	COG1376	ErfK ybiS ycfS ynhG family protein
FYA11_RS15245	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
FYA11_RS15255	COG3039	Transposase
FYA11_RS15290	COG3468	outer membrane autotransporter barrel domain protein
FYA11_RS15295	COG2020	methyltransferase activity
FYA11_RS15300	COG2003	Belongs to the UPF0758 family
FYA11_RS15345	COG1289	transmembrane transporter activity
FYA11_RS15355	COG1686	Belongs to the peptidase S11 family
FYA11_RS15360	COG2925	Exonuclease
FYA11_RS15365	COG0425	Belongs to the sulfur carrier protein TusA family
FYA11_RS15370	COG2391	methyltransferase activity
FYA11_RS15375	COG0531	amino acid
FYA11_RS15385	COG0583	DNA-binding transcription factor activity
FYA11_RS15390	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FYA11_RS15395	COG4115	mRNA cleavage
FYA11_RS15400	COG2161	toxin-antitoxin pair type II binding
FYA11_RS15415	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
FYA11_RS15425	COG0131	Imidazoleglycerol-phosphate dehydratase
FYA11_RS15425	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
FYA11_RS15430	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
FYA11_RS15445	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
FYA11_RS15445	COG0140	phosphoribosyl-ATP diphosphatase activity
FYA11_RS15450	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
FYA11_RS15455	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
FYA11_RS15460	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
FYA11_RS15480	COG0438	transferase activity, transferring glycosyl groups
FYA11_RS15485	COG0110	maltose O-acetyltransferase activity
FYA11_RS15490	COG0438	transferase activity, transferring glycosyl groups
FYA11_RS15500	COG0562	UDP-galactopyranose mutase
FYA11_RS15505	COG2244	polysaccharide biosynthetic process
FYA11_RS15510	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
FYA11_RS15515	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
FYA11_RS15525	COG1088	dTDP-glucose 4,6-dehydratase activity
FYA11_RS15530	COG1210	Utp--glucose-1-phosphate uridylyltransferase
FYA11_RS15540	COG0438	transferase activity, transferring glycosyl groups
FYA11_RS15545	COG2327	Polysaccharide pyruvyl transferase
FYA11_RS15550	COG2244	polysaccharide biosynthetic process
FYA11_RS15555	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
FYA11_RS15560	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FYA11_RS15565	COG0662	Cupin 2, conserved barrel domain protein
FYA11_RS15565	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
FYA11_RS15570	COG0297	glycogen (starch) synthase activity
FYA11_RS15575	COG1051	belongs to the nudix hydrolase family
FYA11_RS15580	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FYA11_RS15585	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
FYA11_RS15590	COG0110	maltose O-acetyltransferase activity
FYA11_RS15595	COG1216	Glycosyl transferase, family 2
FYA11_RS15605	COG0438	transferase activity, transferring glycosyl groups
FYA11_RS15610	COG1045	serine acetyltransferase
FYA11_RS15615	COG0463	Glycosyl transferase, family 2
FYA11_RS15620	COG0489	protein tyrosine kinase activity
FYA11_RS15620	COG3206	protein involved in exopolysaccharide biosynthesis
FYA11_RS15625	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FYA11_RS15630	COG1596	polysaccharide export
FYA11_RS15635	COG1253	flavin adenine dinucleotide binding
FYA11_RS15640	COG2982	Protein involved in outer membrane biogenesis
FYA11_RS15650	COG0572	uridine kinase
FYA11_RS15655	COG5001	Diguanylate cyclase
FYA11_RS15655	COG3447	MASE1 domain protein
FYA11_RS15655	COG5002	protein histidine kinase activity
FYA11_RS15660	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
FYA11_RS15665	COG0443	Heat shock 70 kDa protein
FYA11_RS15670	COG4248	protein with protein kinase and helix-hairpin-helix DNA-binding domains
FYA11_RS15675	COG3779	Protein conserved in bacteria
FYA11_RS15680	COG0631	protein serine/threonine phosphatase activity
FYA11_RS15685	COG4245	von Willebrand factor, type A
FYA11_RS15720	COG2205	protein histidine kinase activity
FYA11_RS15725	COG0745	RESPONSE REGULATOR receiver
FYA11_RS15730	COG3422	double-strand break repair
FYA11_RS15735	COG0826	peptidase U32
FYA11_RS15780	COG1063	alcohol dehydrogenase
FYA11_RS15785	COG3775	system Galactitol-specific IIC component
FYA11_RS15790	COG3414	Phosphotransferase system galactitol-specific IIB component
FYA11_RS15795	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS15815	COG1830	Aldolase
FYA11_RS15820	COG2211	Major facilitator Superfamily
FYA11_RS15825	COG1397	ADP-ribosylglycohydrolase
FYA11_RS15830	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYA11_RS15835	COG2188	Transcriptional regulator
FYA11_RS15840	COG3757	hydrolase, family 25
FYA11_RS15845	COG0351	phosphomethylpyrimidine kinase
FYA11_RS15860	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
FYA11_RS15865	COG5455	response to cobalt ion
FYA11_RS15870	COG3539	Fimbrial protein
FYA11_RS15875	COG3188	usher protein
FYA11_RS15880	COG3121	Chaperone
FYA11_RS15885	COG3539	Fimbrial protein
FYA11_RS15895	COG0489	protein tyrosine kinase activity
FYA11_RS15910	COG3831	ATPase activity
FYA11_RS15920	COG0714	Associated with various cellular activities
FYA11_RS15925	COG2425	protein containing a von Willebrand factor type A (vWA) domain
FYA11_RS15930	COG3552	Protein containing von Willebrand factor type A (VWA) domain
FYA11_RS15940	COG4808	Protein conserved in bacteria
FYA11_RS15945	COG4807	Protein conserved in bacteria
FYA11_RS15950	COG3279	Response regulator of the LytR AlgR family
FYA11_RS15955	COG3275	phosphorelay sensor kinase activity
FYA11_RS15960	COG0789	Transcriptional regulator
FYA11_RS15970	COG1174	glycine betaine transport
FYA11_RS15975	COG1125	glycine betaine transport
FYA11_RS15980	COG1174	glycine betaine transport
FYA11_RS15985	COG1732	Glycine betaine
FYA11_RS15990	COG1472	Belongs to the glycosyl hydrolase 3 family
FYA11_RS15995	COG0277	FAD linked oxidase domain protein
FYA11_RS16000	COG1686	Belongs to the peptidase S11 family
FYA11_RS16010	COG0586	Pfam SNARE associated Golgi protein
FYA11_RS16015	COG1028	Short-chain dehydrogenase reductase Sdr
FYA11_RS16030	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FYA11_RS16040	COG1346	cytolysis
FYA11_RS16050	COG2949	membrane
FYA11_RS16060	COG0493	'glutamate synthase
FYA11_RS16065	COG0167	dihydroorotate dehydrogenase activity
FYA11_RS16065	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
FYA11_RS16070	COG4211	Belongs to the binding-protein-dependent transport system permease family
FYA11_RS16075	COG1129	ABC transporter
FYA11_RS16080	COG1879	ABC-type sugar transport system periplasmic component
FYA11_RS16085	COG1609	Transcriptional regulator
FYA11_RS16090	COG2311	Membrane
FYA11_RS16105	COG4771	TonB-dependent receptor
FYA11_RS16110	COG0833	amino acid
FYA11_RS16115	COG0583	DNA-binding transcription factor activity
FYA11_RS16120	COG2855	membrane
FYA11_RS16130	COG1522	sequence-specific DNA binding
FYA11_RS16130	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYA11_RS16135	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FYA11_RS16145	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FYA11_RS16150	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FYA11_RS16155	COG2313	pseudouridylate synthase activity
FYA11_RS16160	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYA11_RS16165	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
FYA11_RS16165	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FYA11_RS16165	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FYA11_RS16170	COG1105	Belongs to the carbohydrate kinase PfkB family
FYA11_RS16175	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS16175	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS16180	COG2814	Major facilitator Superfamily
FYA11_RS16195	COG0246	Mannitol dehydrogenase
FYA11_RS16200	COG0523	cobalamin synthesis protein
FYA11_RS16205	COG0671	phosphoesterase, PA-phosphatase related
FYA11_RS16210	COG0791	NLP P60 protein
FYA11_RS16215	COG2200	EAL domain
FYA11_RS16220	COG4166	transmembrane transport
FYA11_RS16225	COG4174	ABC transporter (Permease)
FYA11_RS16230	COG4239	(ABC) transporter, permease
FYA11_RS16235	COG4172	Belongs to the ABC transporter superfamily
FYA11_RS16245	COG2814	Major facilitator Superfamily
FYA11_RS16250	COG1187	pseudouridine synthase activity
FYA11_RS16255	COG1061	Type III restriction enzyme res subunit
FYA11_RS16275	COG3083	sulfuric ester hydrolase activity
FYA11_RS16295	COG2197	response regulator
FYA11_RS16300	COG4235	cytochrome complex assembly
FYA11_RS16300	COG3088	subunit of a heme lyase
FYA11_RS16305	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYA11_RS16310	COG1138	Cytochrome C-type biogenesis protein
FYA11_RS16320	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FYA11_RS16325	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FYA11_RS16330	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FYA11_RS16335	COG4133	protoheme IX ABC transporter activity
FYA11_RS16340	COG3005	denitrification pathway
FYA11_RS16345	COG3043	anaerobic respiration
FYA11_RS16350	COG0348	domain, Protein
FYA11_RS16355	COG0437	4 iron, 4 sulfur cluster binding
FYA11_RS16365	COG3062	negative regulation of establishment of protein localization
FYA11_RS16370	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYA11_RS16370	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYA11_RS16385	COG4615	Cyclic peptide transporter
FYA11_RS16390	COG3145	DNA-N1-methyladenine dioxygenase activity
FYA11_RS16395	COG2169	Transcriptional regulator
FYA11_RS16395	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FYA11_RS16400	COG1477	protein flavinylation
FYA11_RS16405	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYA11_RS16410	COG2198	Histidine kinase
FYA11_RS16410	COG0642	Histidine kinase
FYA11_RS16415	COG2197	response regulator
FYA11_RS16420	COG2205	protein histidine kinase activity
FYA11_RS16420	COG0784	Response regulator, receiver
FYA11_RS16425	COG3852	Histidine kinase
FYA11_RS16430	COG2204	response regulator
FYA11_RS16435	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
FYA11_RS16440	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FYA11_RS16445	COG2031	fatty acid transporter
FYA11_RS16450	COG0183	Belongs to the thiolase family
FYA11_RS16455	COG4676	Protein conserved in bacteria
FYA11_RS16460	COG5445	Predicted secreted protein (DUF2300)
FYA11_RS16470	COG3234	Protein of unknown function (DUF1175)
FYA11_RS16475	COG4685	Uncharacterized protein conserved in bacteria (DUF2138)
FYA11_RS16480	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
FYA11_RS16490	COG3468	outer membrane autotransporter barrel domain protein
FYA11_RS16495	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FYA11_RS16500	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FYA11_RS16505	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FYA11_RS16510	COG3642	lipopolysaccharide core region biosynthetic process
FYA11_RS16520	COG0584	glycerophosphoryl diester phosphodiesterase
FYA11_RS16525	COG2271	Major facilitator Superfamily
FYA11_RS16530	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
FYA11_RS16540	COG0247	lactate metabolic process
FYA11_RS16545	COG5464	transposase or invertase
FYA11_RS16560	COG2271	Major facilitator Superfamily
FYA11_RS16570	COG1414	Transcriptional regulator
FYA11_RS16635	COG0318	PFAM AMP-dependent synthetase and ligase
FYA11_RS16645	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FYA11_RS16660	COG1169	isochorismate synthase
FYA11_RS16665	COG4575	ribosome binding
FYA11_RS16670	COG2153	protein acetylation
FYA11_RS16680	COG5160	protein modification by small protein removal
FYA11_RS16685	COG2304	oxidoreductase activity
FYA11_RS16690	COG2234	aminopeptidase activity
FYA11_RS16710	COG0457	Tetratricopeptide repeat
FYA11_RS16720	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYA11_RS16725	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FYA11_RS16735	COG0839	Belongs to the complex I subunit 6 family
FYA11_RS16750	COG1034	ATP synthesis coupled electron transport
FYA11_RS16755	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
FYA11_RS16760	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
FYA11_RS16780	COG0583	DNA-binding transcription factor activity
FYA11_RS16785	COG0436	Aminotransferase
FYA11_RS16795	COG0490	domain, Protein
FYA11_RS16795	COG0471	metal ion transport
FYA11_RS16800	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FYA11_RS16815	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
FYA11_RS16820	COG0280	phosphate acetyltransferase
FYA11_RS16820	COG0857	belongs to the CobB CobQ family
FYA11_RS16825	COG1288	antiporter activity
FYA11_RS16830	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
FYA11_RS16835	COG0622	Phosphoesterase
FYA11_RS16840	COG0625	glutathione transferase activity
FYA11_RS16845	COG0625	glutathione transferase activity
FYA11_RS16850	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
FYA11_RS16855	COG1090	epimerase
FYA11_RS16860	COG5464	transposase or invertase
FYA11_RS16865	COG4598	ABC transporter
FYA11_RS16870	COG4160	amino acid transport
FYA11_RS16875	COG4215	(ABC) transporter
FYA11_RS16880	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA11_RS16885	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA11_RS16890	COG0163	prenyltransferase activity
FYA11_RS16895	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
FYA11_RS16900	COG1286	toxin biosynthetic process
FYA11_RS16905	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
FYA11_RS16910	COG0285	dihydrofolate synthase activity
FYA11_RS16920	COG0586	Pfam SNARE associated Golgi protein
FYA11_RS16930	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FYA11_RS16945	COG2814	Major facilitator Superfamily
FYA11_RS16950	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FYA11_RS16965	COG3101	peptidyl-lysine hydroxylation
FYA11_RS16970	COG0730	response to heat
FYA11_RS16985	COG2890	protein-(glutamine-N5) methyltransferase activity
FYA11_RS17000	COG3539	Fimbrial protein
FYA11_RS17005	COG3539	Fimbrial protein
FYA11_RS17010	COG3539	Fimbrial protein
FYA11_RS17015	COG3121	Chaperone
FYA11_RS17025	COG3539	Fimbrial protein
FYA11_RS17030	COG2062	phosphohistidine phosphatase, SixA
FYA11_RS17045	COG3691	Protein conserved in bacteria
FYA11_RS17050	COG2067	long-chain fatty acid transport protein
FYA11_RS17060	COG2853	Lipoprotein
FYA11_RS17065	COG2116	formate transmembrane transporter activity
FYA11_RS17075	COG0582	viral genome integration into host DNA
FYA11_RS17080	COG2246	polysaccharide biosynthetic process
FYA11_RS17120	COG4725	Belongs to the MT-A70-like family
FYA11_RS17130	COG1846	Transcriptional regulator
FYA11_RS17140	COG5532	Uncharacterized conserved protein (DUF2303)
FYA11_RS17145	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
FYA11_RS17165	COG0583	DNA-binding transcription factor activity
FYA11_RS17170	COG2610	gluconate transmembrane transporter activity
FYA11_RS17180	COG0477	Major facilitator Superfamily
FYA11_RS17185	COG1566	PFAM secretion protein HlyD family protein
FYA11_RS17190	COG2197	response regulator
FYA11_RS17195	COG0784	Response regulator, receiver
FYA11_RS17195	COG2205	protein histidine kinase activity
FYA11_RS17195	COG2198	Histidine kinase
FYA11_RS17195	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA11_RS17200	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA11_RS17205	COG0679	Auxin Efflux Carrier
FYA11_RS17210	COG0028	Belongs to the TPP enzyme family
FYA11_RS17235	COG1560	Kdo2-lipid A biosynthetic process
FYA11_RS17245	COG0436	Aminotransferase
FYA11_RS17250	COG3275	phosphorelay sensor kinase activity
FYA11_RS17255	COG3279	Response regulator of the LytR AlgR family
FYA11_RS17260	COG2207	Transcriptional regulator
FYA11_RS17265	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS17265	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
FYA11_RS17265	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS17270	COG1363	Peptidase, m42
FYA11_RS17275	COG0006	proline dipeptidase activity
FYA11_RS17280	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FYA11_RS17285	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FYA11_RS17310	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FYA11_RS17315	COG3385	transposase activity
FYA11_RS17320	COG2200	EAL domain
FYA11_RS17320	COG2199	diguanylate cyclase activity
FYA11_RS17335	COG3415	Transposase
FYA11_RS17340	COG3415	Transposase
FYA11_RS17375	COG0583	DNA-binding transcription factor activity
FYA11_RS17385	COG2211	Major facilitator Superfamily
FYA11_RS17390	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
FYA11_RS17400	COG0583	DNA-binding transcription factor activity
FYA11_RS17405	COG0385	Bile acid
FYA11_RS17410	COG3530	Putative quorum-sensing-regulated virulence factor
FYA11_RS17430	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FYA11_RS17435	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS17440	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
FYA11_RS17445	COG2190	(PTS) system
FYA11_RS17460	COG4884	unkown
FYA11_RS17460	COG3831	ATPase activity
FYA11_RS17465	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FYA11_RS17470	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
FYA11_RS17475	COG4208	sulfate ABC transporter
FYA11_RS17480	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
FYA11_RS17485	COG4150	thiosulfate binding
FYA11_RS17490	COG1028	Short-chain dehydrogenase reductase Sdr
FYA11_RS17505	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FYA11_RS17505	COG1263	PTS System
FYA11_RS17510	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FYA11_RS17515	COG2837	iron assimilation
FYA11_RS17530	COG0456	acetyltransferase
FYA11_RS17535	COG0860	N-Acetylmuramoyl-L-alanine amidase
FYA11_RS17545	COG2207	Transcriptional regulator
FYA11_RS17550	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
FYA11_RS17555	COG4816	utilization protein
FYA11_RS17565	COG4303	Ethanolamine ammonia lyase large subunit
FYA11_RS17570	COG4819	ethanolamine utilization protein
FYA11_RS17575	COG3192	ethanolamine utilization protein
FYA11_RS17580	COG1454	alcohol dehydrogenase
FYA11_RS17585	COG4820	ethanolamine utilization protein (EutJ)
FYA11_RS17590	COG1012	belongs to the aldehyde dehydrogenase family
FYA11_RS17595	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
FYA11_RS17600	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
FYA11_RS17605	COG0280	phosphate acetyltransferase
FYA11_RS17610	COG4812	Cobalamin adenosyltransferase
FYA11_RS17615	COG4766	ethanolamine catabolic process
FYA11_RS17620	COG4917	ethanolamine utilization protein
FYA11_RS17625	COG4810	utilization protein
FYA11_RS17630	COG0280	phosphate acetyltransferase
FYA11_RS17630	COG0281	malic enzyme
FYA11_RS17635	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
FYA11_RS17640	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
FYA11_RS17645	COG5342	invasion associated locus B
FYA11_RS17655	COG0493	'glutamate synthase
FYA11_RS17655	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYA11_RS17660	COG3850	Histidine kinase
FYA11_RS17665	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FYA11_RS17675	COG1393	Belongs to the ArsC family
FYA11_RS17690	COG0400	carboxylic ester hydrolase activity
FYA11_RS17695	COG1444	tRNA N-acetyltransferase activity
FYA11_RS17700	COG2321	neutral zinc metallopeptidase
FYA11_RS17710	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
FYA11_RS17720	COG2716	regulation of RNA biosynthetic process
FYA11_RS17725	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
FYA11_RS17730	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYA11_RS17735	COG0651	ATP synthesis coupled electron transport
FYA11_RS17740	COG0650	Formate hydrogenlyase subunit 4
FYA11_RS17745	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FYA11_RS17750	COG4237	Hydrogenase 4 membrane
FYA11_RS17755	COG0651	ATP synthesis coupled electron transport
FYA11_RS17760	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
FYA11_RS17760	COG3261	NADH dehydrogenase
FYA11_RS17765	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYA11_RS17770	COG3260	NADH ubiquinone oxidoreductase 20
FYA11_RS17780	COG3604	Transcriptional regulator
FYA11_RS17785	COG2116	formate transmembrane transporter activity
FYA11_RS17790	COG0628	permease
FYA11_RS17795	COG4783	chaperone-mediated protein folding
FYA11_RS17800	COG1393	Belongs to the ArsC family
FYA11_RS17810	COG2233	PERMEase
FYA11_RS17825	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
FYA11_RS17830	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
FYA11_RS17835	COG0248	Ppx GppA phosphatase
FYA11_RS17840	COG2200	EAL domain
FYA11_RS17850	COG3133	Outer membrane lipoprotein
FYA11_RS17865	COG0517	IMP dehydrogenase activity
FYA11_RS17865	COG0516	GMP reductase activity
FYA11_RS17875	COG1645	bacterial-type flagellum-dependent swarming motility
FYA11_RS17885	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYA11_RS17890	COG2976	Protein conserved in bacteria
FYA11_RS17920	COG4953	penicillin-binding protein 1C
FYA11_RS17925	COG2373	Large extracellular alpha-helical protein
FYA11_RS17930	COG2897	thiosulfate sulfurtransferase activity
FYA11_RS17945	COG2975	iron-sulfur cluster assembly
FYA11_RS17950	COG0633	Ferredoxin
FYA11_RS17970	COG0822	iron-sulfur transferase activity
FYA11_RS17990	COG0483	inositol monophosphate 1-phosphatase activity
FYA11_RS17995	COG1073	alpha beta
FYA11_RS18000	COG3711	transcriptional antiterminator
FYA11_RS18005	COG2814	Major facilitator Superfamily
FYA11_RS18010	COG0583	DNA-binding transcription factor activity
FYA11_RS18015	COG4638	Rieske (2fe-2S)
FYA11_RS18040	COG2259	Doxx family
FYA11_RS18045	COG2017	converts alpha-aldose to the beta-anomer
FYA11_RS18050	COG1063	alcohol dehydrogenase
FYA11_RS18055	COG1172	Belongs to the binding-protein-dependent transport system permease family
FYA11_RS18060	COG1129	ABC transporter
FYA11_RS18065	COG1879	ABC-type sugar transport system periplasmic component
FYA11_RS18070	COG0457	Tetratricopeptide repeat
FYA11_RS18075	COG1940	carbohydrate kinase activity
FYA11_RS18085	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FYA11_RS18085	COG1017	nitric oxide dioxygenase activity
FYA11_RS18090	COG0347	Belongs to the P(II) protein family
FYA11_RS18095	COG2204	response regulator
FYA11_RS18100	COG3170	Tfp pilus assembly protein FimV
FYA11_RS18105	COG2205	protein histidine kinase activity
FYA11_RS18110	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FYA11_RS18110	COG0047	phosphoribosylformylglycinamidine synthase activity
FYA11_RS18125	COG0560	Phosphoserine phosphatase
FYA11_RS18130	COG1737	Transcriptional regulator
FYA11_RS18135	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYA11_RS18150	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
FYA11_RS18170	COG0681	Belongs to the peptidase S26 family
FYA11_RS18180	COG3086	response to oxidative stress
FYA11_RS18185	COG3026	antisigma factor binding
FYA11_RS18190	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
FYA11_RS18195	COG1595	DNA-templated transcription, initiation
FYA11_RS18205	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
FYA11_RS18215	COG0513	Belongs to the DEAD box helicase family
FYA11_RS18220	COG0583	DNA-binding transcription factor activity
FYA11_RS18240	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FYA11_RS18245	COG3118	belongs to the thioredoxin family
FYA11_RS18250	COG3148	PFAM DTW domain containing protein
FYA11_RS18255	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FYA11_RS18255	COG1042	CoA-binding domain protein
FYA11_RS18255	COG0045	succinate-CoA ligase (ADP-forming) activity
FYA11_RS18260	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FYA11_RS18265	COG5544	Lipoprotein
FYA11_RS18295	COG0542	response to heat
FYA11_RS18300	COG1496	oxidoreductase activity
FYA11_RS18305	COG0564	pseudouridine synthase activity
FYA11_RS18310	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYA11_RS18315	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
FYA11_RS18325	COG0077	Prephenate dehydratase
FYA11_RS18325	COG1605	Chorismate mutase
FYA11_RS18330	COG1605	Chorismate mutase
FYA11_RS18330	COG0287	Prephenate dehydrogenase
FYA11_RS18335	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FYA11_RS18350	COG2199	diguanylate cyclase activity
FYA11_RS18355	COG2885	chlorophyll binding
FYA11_RS18380	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
FYA11_RS18385	COG4137	Cytochrome C assembly protein
FYA11_RS18390	COG4536	flavin adenine dinucleotide binding
FYA11_RS18405	COG0497	DNA recombination
FYA11_RS18410	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYA11_RS18420	COG2867	negative regulation of translational initiation
FYA11_RS18435	COG0582	viral genome integration into host DNA
FYA11_RS18445	COG3311	Transcriptional regulator
FYA11_RS18450	COG4983	Phage plasmid primase, P4 family domain protein
FYA11_RS18460	COG1204	response to ionizing radiation
FYA11_RS18470	COG1479	Protein of unknown function DUF262
FYA11_RS18485	COG3596	GTP binding
FYA11_RS18495	COG2378	regulation of single-species biofilm formation
FYA11_RS18540	COG2003	Belongs to the UPF0758 family
FYA11_RS18560	COG3468	outer membrane autotransporter barrel domain protein
FYA11_RS18600	COG0579	oxidoreductase
FYA11_RS18605	COG1012	belongs to the aldehyde dehydrogenase family
FYA11_RS18610	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FYA11_RS18615	COG1113	amino acid transport
FYA11_RS18620	COG1802	Transcriptional regulator
FYA11_RS18625	COG1652	LysM domain
FYA11_RS18630	COG0401	homolog of Blt101
FYA11_RS18635	COG0640	Transcriptional regulator
FYA11_RS18640	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FYA11_RS18645	COG2916	Histone family protein nucleoid-structuring protein H-NS
FYA11_RS18660	COG4575	ribosome binding
FYA11_RS18665	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FYA11_RS18675	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FYA11_RS18680	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FYA11_RS18685	COG4175	Glycine betaine
FYA11_RS18690	COG4176	ABC-type proline glycine betaine transport system permease component
FYA11_RS18695	COG2113	Glycine betaine
FYA11_RS18705	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
FYA11_RS18715	COG1846	Transcriptional regulator
FYA11_RS18720	COG1566	PFAM secretion protein HlyD family protein
FYA11_RS18725	COG2814	Major facilitator Superfamily
FYA11_RS18740	COG1238	metal cluster binding
FYA11_RS18745	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FYA11_RS18775	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
FYA11_RS18795	COG1546	Belongs to the CinA family
FYA11_RS18800	COG2951	lytic endotransglycosylase activity
FYA11_RS18805	COG3730	PTS system glucitol sorbitol-specific
FYA11_RS18810	COG3732	PTS system glucitol sorbitol-specific
FYA11_RS18815	COG3731	PTS system glucitol sorbitol-specific IIA component
FYA11_RS18820	COG1028	Short-chain dehydrogenase reductase Sdr
FYA11_RS18825	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS18830	COG1349	DNA-binding transcription factor activity
FYA11_RS18835	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
FYA11_RS18835	COG0517	IMP dehydrogenase activity
FYA11_RS18855	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
FYA11_RS18860	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYA11_RS18865	COG1609	Transcriptional regulator
FYA11_RS18870	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FYA11_RS18870	COG1263	PTS System
FYA11_RS18875	COG2723	6-phospho-beta-galactosidase activity
FYA11_RS18880	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
FYA11_RS18890	COG3260	NADH ubiquinone oxidoreductase 20
FYA11_RS18895	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYA11_RS18910	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
FYA11_RS19000	COG0650	Formate hydrogenlyase subunit 4
FYA11_RS19005	COG0651	ATP synthesis coupled electron transport
FYA11_RS19010	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYA11_RS19025	COG0375	protein maturation
FYA11_RS19030	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
FYA11_RS19035	COG0298	carbon dioxide binding
FYA11_RS19040	COG0409	Hydrogenase expression formation protein
FYA11_RS19045	COG0309	Hydrogenase expression formation protein (HypE)
FYA11_RS19050	COG3604	Transcriptional regulator
FYA11_RS19065	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
FYA11_RS19070	COG1349	DNA-binding transcription factor activity
FYA11_RS19075	COG2084	Dehydrogenase
FYA11_RS19080	COG3395	kinase activity
FYA11_RS19085	COG0235	Class ii aldolase
FYA11_RS19090	COG3622	Belongs to the hyi family
FYA11_RS19095	COG2610	gluconate transmembrane transporter activity
FYA11_RS19105	COG1388	LysM domain
FYA11_RS19105	COG4942	peptidase
FYA11_RS19160	COG2234	aminopeptidase activity
FYA11_RS19165	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FYA11_RS19170	COG1518	maintenance of DNA repeat elements
FYA11_RS19185	COG1857	crispr-associated protein
FYA11_RS19200	COG1203	CRISPR-associated helicase, Cas3
FYA11_RS19220	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
FYA11_RS19225	COG0720	synthase
FYA11_RS19230	COG0644	oxidoreductase
FYA11_RS19235	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
FYA11_RS19240	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
FYA11_RS19245	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
FYA11_RS19250	COG2086	electron transfer activity
FYA11_RS19255	COG0477	Major facilitator Superfamily
FYA11_RS19260	COG0277	FAD linked oxidase domain protein
FYA11_RS19265	COG1028	Short-chain dehydrogenase reductase Sdr
FYA11_RS19270	COG2223	nitrite transmembrane transporter activity
FYA11_RS19275	COG1070	Carbohydrate kinase
FYA11_RS19280	COG0602	queuosine metabolic process
FYA11_RS19290	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
FYA11_RS19305	COG3956	TIGRFAM MazG family protein
FYA11_RS19310	COG2337	Toxic component of a toxin-antitoxin (TA) module
FYA11_RS19315	COG2336	PFAM SpoVT AbrB
FYA11_RS19320	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FYA11_RS19325	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
FYA11_RS19330	COG3437	response regulator, receiver
FYA11_RS19330	COG4999	Histidine kinase
FYA11_RS19330	COG3850	Histidine kinase
FYA11_RS19330	COG2205	protein histidine kinase activity
FYA11_RS19335	COG4948	Mandelate Racemase Muconate Lactonizing
FYA11_RS19340	COG4948	Mandelate Racemase Muconate Lactonizing
FYA11_RS19345	COG2271	Major facilitator Superfamily
FYA11_RS19350	COG0716	FMN binding
FYA11_RS19355	COG0564	pseudouridine synthase activity
FYA11_RS19360	COG3098	single-species biofilm formation
FYA11_RS19375	COG1611	Belongs to the LOG family
FYA11_RS19380	COG0814	amino acid
FYA11_RS19385	COG1760	l-serine dehydratase
FYA11_RS19395	COG1454	alcohol dehydrogenase
FYA11_RS19400	COG0235	Class ii aldolase
FYA11_RS19405	COG0738	Major facilitator superfamily
FYA11_RS19415	COG1070	Carbohydrate kinase
FYA11_RS19425	COG1349	DNA-binding transcription factor activity
FYA11_RS19435	COG2363	Small membrane protein
FYA11_RS19440	COG0583	DNA-binding transcription factor activity
FYA11_RS19450	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FYA11_RS19455	COG2166	iron-sulfur cluster assembly
FYA11_RS19460	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
FYA11_RS19465	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
FYA11_RS19485	COG0860	N-Acetylmuramoyl-L-alanine amidase
FYA11_RS19490	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
FYA11_RS19490	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
FYA11_RS19495	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
FYA11_RS19500	COG1074	ATP-dependent DNA helicase activity
FYA11_RS19505	COG1025	Belongs to the peptidase M16 family
FYA11_RS19510	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
FYA11_RS19515	COG4967	type IV pilus modification protein PilV
FYA11_RS19525	COG4795	General secretion pathway protein
FYA11_RS19530	COG2165	general secretion pathway protein
FYA11_RS19545	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
FYA11_RS19565	COG0861	Integral membrane protein TerC family
FYA11_RS19575	COG0667	Aldo Keto reductase
FYA11_RS19595	COG1609	Transcriptional regulator
FYA11_RS19605	COG0583	DNA-binding transcription factor activity
FYA11_RS19610	COG1794	racemase activity, acting on amino acids and derivatives
FYA11_RS19615	COG2814	Major facilitator Superfamily
FYA11_RS19620	COG1028	Short-chain dehydrogenase reductase Sdr
FYA11_RS19630	COG0183	Belongs to the thiolase family
FYA11_RS19635	COG0814	amino acid
FYA11_RS19640	COG2771	luxR family
FYA11_RS19645	COG3710	Transcriptional regulator
FYA11_RS19670	COG0457	Tetratricopeptide repeat
FYA11_RS19675	COG3710	Transcriptional regulator
FYA11_RS19675	COG0457	Tetratricopeptide repeat
FYA11_RS19725	COG4942	peptidase
FYA11_RS19730	COG1529	Aldehyde oxidase and xanthine dehydrogenase
FYA11_RS19735	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
FYA11_RS19740	COG2080	2 iron, 2 sulfur cluster binding
FYA11_RS19745	COG3829	transcription factor binding
FYA11_RS19750	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
FYA11_RS19755	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYA11_RS19760	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FYA11_RS19770	COG0549	Belongs to the carbamate kinase family
FYA11_RS19775	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
FYA11_RS19775	COG3608	succinylglutamate desuccinylase aspartoacylase
FYA11_RS19780	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FYA11_RS19785	COG2068	MobA-Related Protein
FYA11_RS19790	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYA11_RS19790	COG0493	'glutamate synthase
FYA11_RS19795	COG0402	S-adenosylhomocysteine deaminase activity
FYA11_RS19800	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
FYA11_RS19805	COG2080	2 iron, 2 sulfur cluster binding
FYA11_RS19805	COG1529	Aldehyde oxidase and xanthine dehydrogenase
FYA11_RS19810	COG2233	PERMEase
FYA11_RS19815	COG0402	S-adenosylhomocysteine deaminase activity
FYA11_RS19820	COG2252	PERMEase
FYA11_RS19825	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYA11_RS19830	COG0493	'glutamate synthase
FYA11_RS19830	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYA11_RS19835	COG2233	PERMEase
FYA11_RS19855	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
FYA11_RS19865	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
FYA11_RS19870	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
FYA11_RS19875	COG4974	Belongs to the 'phage' integrase family
FYA11_RS19880	COG0716	FMN binding
FYA11_RS19890	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
FYA11_RS19900	COG1272	protein, Hemolysin III
FYA11_RS19910	COG2723	6-phospho-beta-galactosidase activity
FYA11_RS19915	COG1028	Short-chain dehydrogenase reductase Sdr
FYA11_RS19940	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FYA11_RS19945	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FYA11_RS19950	COG0006	proline dipeptidase activity
FYA11_RS19970	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
FYA11_RS19980	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYA11_RS20000	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
FYA11_RS20000	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
FYA11_RS20005	COG1703	isobutyryl-CoA mutase activity
FYA11_RS20010	COG1024	Enoyl-CoA hydratase
FYA11_RS20015	COG0427	acetyl-CoA hydrolase
FYA11_RS20020	COG0583	DNA-binding transcription factor activity
FYA11_RS20025	COG2968	Membrane
FYA11_RS20030	COG1279	arginine transmembrane transporter activity
FYA11_RS20035	COG0668	transmembrane transport
FYA11_RS20040	COG0191	fructose-bisphosphate aldolase activity
FYA11_RS20055	COG1072	(Pantothenic acid kinase))
FYA11_RS20060	COG3722	fumarate hydratase activity
FYA11_RS20065	COG1494	fructose-1,6-bisphosphatase
FYA11_RS20070	COG1063	alcohol dehydrogenase
FYA11_RS20075	COG2213	PTS system mannitol-specific
FYA11_RS20080	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS20085	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
FYA11_RS20090	COG0501	Belongs to the peptidase M48B family
FYA11_RS20100	COG1166	arginine decarboxylase activity
FYA11_RS20115	COG2814	Major facilitator Superfamily
FYA11_RS20125	COG2356	endonuclease I
FYA11_RS20130	COG1385	rRNA (uridine-N3-)-methyltransferase activity
FYA11_RS20135	COG0189	ligase activity
FYA11_RS20150	COG2805	Type II/IV secretion system protein
FYA11_RS20155	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
FYA11_RS20160	COG0762	integral membrane protein
FYA11_RS20170	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
FYA11_RS20175	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FYA11_RS20185	COG0252	asparaginase activity
FYA11_RS20195	COG3171	Protein conserved in bacteria
FYA11_RS20205	COG1194	a g-specific adenine glycosylase
FYA11_RS20220	COG2211	Major facilitator Superfamily
FYA11_RS20225	COG1982	Orn Lys Arg decarboxylase major
FYA11_RS20230	COG1811	Na channel or pump
FYA11_RS20240	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
FYA11_RS20250	COG3031	protein transport across the cell outer membrane
FYA11_RS20260	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
FYA11_RS20265	COG3064	Membrane
FYA11_RS20270	COG1620	l-lactate permease
FYA11_RS20275	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
FYA11_RS20280	COG3193	protein, possibly involved in utilization of glycolate and propanediol
FYA11_RS20285	COG0247	lactate metabolic process
FYA11_RS20290	COG0277	FAD linked oxidase domain protein
FYA11_RS20295	COG0277	FAD linked oxidase domain protein
FYA11_RS20300	COG2186	Transcriptional regulator
FYA11_RS20305	COG0456	acetyltransferase
FYA11_RS20315	COG2244	polysaccharide biosynthetic process
FYA11_RS20320	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
FYA11_RS20325	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
FYA11_RS20330	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
FYA11_RS20335	COG0306	phosphate transporter
FYA11_RS20340	COG0754	glutathionylspermidine amidase activity
FYA11_RS20345	COG0625	glutathione transferase activity
FYA11_RS20350	COG0298	carbon dioxide binding
FYA11_RS20360	COG1773	rubredoxin
FYA11_RS20365	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
FYA11_RS20370	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
FYA11_RS20375	COG5557	Pfam Polysulphide reductase, NrfD
FYA11_RS20380	COG0437	4 iron, 4 sulfur cluster binding
FYA11_RS20385	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
FYA11_RS20400	COG0667	Aldo Keto reductase
FYA11_RS20410	COG1028	Short-chain dehydrogenase reductase Sdr
FYA11_RS20415	COG0848	biopolymer transport protein
FYA11_RS20420	COG0811	peptide transport
FYA11_RS20425	COG0626	cystathionine gamma-synthase activity
FYA11_RS20430	COG0586	Pfam SNARE associated Golgi protein
FYA11_RS20435	COG2207	Transcriptional regulator
FYA11_RS20440	COG1979	alcohol dehydrogenase
FYA11_RS20445	COG0656	L-ascorbic acid biosynthetic process
FYA11_RS20455	COG4238	major outer membrane lipoprotein
FYA11_RS20460	COG1032	radical SAM domain protein
FYA11_RS20465	COG2132	Multicopper oxidase
FYA11_RS20470	COG0204	Acyl-transferase
FYA11_RS20475	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
FYA11_RS20480	COG4166	transmembrane transport
FYA11_RS20485	COG2944	sequence-specific DNA binding
FYA11_RS20495	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
FYA11_RS20500	COG3111	PFAM Bacterial OB fold (BOF) protein
FYA11_RS20505	COG0745	RESPONSE REGULATOR receiver
FYA11_RS20510	COG0642	Histidine kinase
FYA11_RS20520	COG2249	NAD(P)H dehydrogenase (quinone) activity
FYA11_RS20525	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
FYA11_RS20530	COG0187	DNA topoisomerase II activity
FYA11_RS20535	COG3150	esterase
FYA11_RS20540	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FYA11_RS20545	COG3151	Protein conserved in bacteria
FYA11_RS20550	COG0494	nUDIX hydrolase
FYA11_RS20555	COG1538	Outer membrane efflux protein
FYA11_RS20565	COG0754	glutathionylspermidine amidase activity
FYA11_RS20570	COG3384	dioxygenase
FYA11_RS20585	COG2960	long-chain fatty acid transporting porin activity
FYA11_RS20590	COG3539	Fimbrial protein
FYA11_RS20600	COG3188	usher protein
FYA11_RS20605	COG3121	Chaperone
FYA11_RS20610	COG3539	Fimbrial protein
FYA11_RS20620	COG1585	Membrane protein implicated in regulation of membrane protease activity
FYA11_RS20625	COG2268	Band 7 protein
FYA11_RS20650	COG3025	triphosphatase activity
FYA11_RS20655	COG4991	sh3 domain protein
FYA11_RS20670	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
FYA11_RS20680	COG0583	DNA-binding transcription factor activity
FYA11_RS20685	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
FYA11_RS20695	COG0471	metal ion transport
FYA11_RS20705	COG0828	Belongs to the bacterial ribosomal protein bS21 family
FYA11_RS20710	COG0358	DNA primase activity
FYA11_RS20715	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FYA11_RS20730	COG2375	cellular response to nickel ion
FYA11_RS20735	COG1695	Transcriptional regulator
FYA11_RS20740	COG0840	transmembrane signaling receptor activity
FYA11_RS20750	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FYA11_RS20755	COG1609	Transcriptional regulator
FYA11_RS20760	COG3250	beta-galactosidase activity
FYA11_RS20765	COG2731	YhcH YjgK YiaL family protein
FYA11_RS20770	COG0531	amino acid
FYA11_RS20780	COG3408	Glycogen debranching enzyme
FYA11_RS20780	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
FYA11_RS20785	COG0446	pyridine nucleotide-disulphide oxidoreductase
FYA11_RS20785	COG1902	pentaerythritol trinitrate reductase activity
FYA11_RS20790	COG5499	transcription regulator containing HTH domain
FYA11_RS20795	COG4680	protein conserved in bacteria
FYA11_RS20805	COG1451	nucleotide metabolic process
FYA11_RS20810	COG2949	membrane
FYA11_RS20815	COG0673	inositol 2-dehydrogenase activity
FYA11_RS20820	COG0861	Integral membrane protein TerC family
FYA11_RS20825	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
FYA11_RS20835	COG2721	sulfolactate sulfo-lyase activity
FYA11_RS20845	COG2271	Major facilitator Superfamily
FYA11_RS20850	COG2186	Transcriptional regulator
FYA11_RS20855	COG0586	Pfam SNARE associated Golgi protein
FYA11_RS20865	COG1422	Protein of unknown function (DUF1090)
FYA11_RS20870	COG4575	ribosome binding
FYA11_RS20875	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
FYA11_RS20885	COG2259	Doxx family
FYA11_RS20890	COG0435	Glutathione S-transferase
FYA11_RS20895	COG3152	Membrane
FYA11_RS20900	COG3152	Membrane
FYA11_RS20905	COG0583	DNA-binding transcription factor activity
FYA11_RS20910	COG1741	Belongs to the pirin family
FYA11_RS20925	COG0814	amino acid
FYA11_RS20930	COG1760	l-serine dehydratase
FYA11_RS20935	COG0251	oxidation-reduction process
FYA11_RS20940	COG1882	Formate acetyltransferase
FYA11_RS20945	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
FYA11_RS20955	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYA11_RS20960	COG0583	DNA-binding transcription factor activity
FYA11_RS20985	COG1929	Belongs to the glycerate kinase type-1 family
FYA11_RS20990	COG2084	Dehydrogenase
FYA11_RS21000	COG2271	Major facilitator Superfamily
FYA11_RS21005	COG2721	sulfolactate sulfo-lyase activity
FYA11_RS21010	COG2002	toxin-antitoxin pair type II binding
FYA11_RS21020	COG1349	DNA-binding transcription factor activity
FYA11_RS21030	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FYA11_RS21045	COG2222	sugar isomerase
FYA11_RS21055	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FYA11_RS21060	COG3715	PTS system
FYA11_RS21065	COG3716	PTS system mannose fructose sorbose family IID component
FYA11_RS21070	COG0363	glucosamine-6-phosphate deaminase activity
FYA11_RS21075	COG3539	Fimbrial protein
FYA11_RS21080	COG3121	Chaperone
FYA11_RS21085	COG3188	usher protein
FYA11_RS21090	COG3539	Fimbrial protein
FYA11_RS21095	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
FYA11_RS21100	COG3107	peptidoglycan biosynthetic process
FYA11_RS21115	COG2823	Periplasmic or secreted lipoprotein
FYA11_RS21120	COG0701	Predicted permease
FYA11_RS21125	COG0702	epimerase
FYA11_RS21130	COG0693	protein deglycase activity
FYA11_RS21145	COG3153	acetyltransferase
FYA11_RS21150	COG3154	lipid carrier protein
FYA11_RS21155	COG0826	peptidase U32
FYA11_RS21160	COG0826	peptidase U32
FYA11_RS21165	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FYA11_RS21170	COG0814	amino acid
FYA11_RS21175	COG0513	Belongs to the DEAD box helicase family
FYA11_RS21215	COG0195	Participates in both transcription termination and antitermination
FYA11_RS21235	COG2194	sulfuric ester hydrolase activity
FYA11_RS21245	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FYA11_RS21255	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
FYA11_RS21260	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FYA11_RS21270	COG1534	Rna-binding protein
FYA11_RS21275	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FYA11_RS21280	COG2027	D-alanyl-D-alanine carboxypeptidase
FYA11_RS21290	COG0697	spore germination
FYA11_RS21305	COG0142	geranyltranstransferase activity
FYA11_RS21310	COG3423	Transcriptional regulator
FYA11_RS21320	COG5007	Belongs to the BolA IbaG family
FYA11_RS21325	COG3113	response to antibiotic
FYA11_RS21330	COG2854	intermembrane phospholipid transfer
FYA11_RS21335	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
FYA11_RS21340	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
FYA11_RS21345	COG1127	ABC transporter
FYA11_RS21350	COG0530	calcium, potassium:sodium antiporter activity
FYA11_RS21355	COG0517	IMP dehydrogenase activity
FYA11_RS21355	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
FYA11_RS21360	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
FYA11_RS21365	COG3117	lipopolysaccharide transmembrane transporter activity
FYA11_RS21370	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
FYA11_RS21375	COG1137	ATPase activity
FYA11_RS21380	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
FYA11_RS21385	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
FYA11_RS21400	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA11_RS21405	COG0515	serine threonine protein kinase
FYA11_RS21415	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
FYA11_RS21425	COG0784	Response regulator, receiver
FYA11_RS21425	COG5002	protein histidine kinase activity
FYA11_RS21425	COG2198	Histidine kinase
FYA11_RS21430	COG1242	4 iron, 4 sulfur cluster binding
FYA11_RS21435	COG0070	glutamate synthase
FYA11_RS21435	COG0067	glutamate synthase
FYA11_RS21435	COG0069	glutamate synthase activity
FYA11_RS21440	COG0493	'glutamate synthase
FYA11_RS21445	COG3539	Fimbrial protein
FYA11_RS21450	COG3121	Chaperone
FYA11_RS21455	COG3188	usher protein
FYA11_RS21475	COG3539	Fimbrial protein
FYA11_RS21480	COG4804	nuclease activity
FYA11_RS21485	COG2731	YhcH YjgK YiaL family protein
FYA11_RS21515	COG3069	C4-dicarboxylate transmembrane transporter activity
FYA11_RS21520	COG2969	positive regulation of protein catabolic process
FYA11_RS21525	COG0625	glutathione transferase activity
FYA11_RS21540	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
FYA11_RS21545	COG3105	Protein conserved in bacteria
FYA11_RS21550	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FYA11_RS21555	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FYA11_RS21575	COG2732	(Barnase) inhibitor
FYA11_RS21595	COG0583	DNA-binding transcription factor activity
FYA11_RS21600	COG0312	modulator of DNA gyrase
FYA11_RS21605	COG3164	Protein of unknown function
FYA11_RS21610	COG1530	ribonuclease E activity
FYA11_RS21615	COG0424	maF-like protein
FYA11_RS21620	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
FYA11_RS21625	COG1792	Involved in formation and maintenance of cell shape
FYA11_RS21630	COG1077	Cell shape determining protein MreB Mrl
FYA11_RS21635	COG2200	EAL domain
FYA11_RS21635	COG2199	diguanylate cyclase activity
FYA11_RS21640	COG0604	alcohol dehydrogenase
FYA11_RS21645	COG0511	ligase activity, forming carbon-carbon bonds
FYA11_RS21650	COG0439	Biotin carboxylase
FYA11_RS21655	COG3924	membrane
FYA11_RS21660	COG4145	pantothenate transmembrane transporter activity
FYA11_RS21670	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FYA11_RS21680	COG2189	Belongs to the N(4) N(6)-methyltransferase family
FYA11_RS21690	COG1309	transcriptional regulator
FYA11_RS21695	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYA11_RS21700	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FYA11_RS21715	COG4597	amino acid ABC transporter
FYA11_RS21720	COG0765	amino acid transport
FYA11_RS21725	COG1126	abc transporter atp-binding protein
FYA11_RS21770	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
FYA11_RS21795	COG0551	DNA topoisomerase type I activity
FYA11_RS21805	COG0758	DNA mediated transformation
FYA11_RS21825	COG0569	domain protein
FYA11_RS21835	COG3036	rescue of stalled ribosome
FYA11_RS21840	COG0789	Transcriptional regulator
FYA11_RS21880	COG0201	protein transport
FYA11_RS21970	COG0089	rRNA binding
FYA11_RS21995	COG3409	Peptidoglycan-binding domain 1 protein
FYA11_RS21995	COG3267	Type II secretory pathway component ExeA
FYA11_RS22000	COG3031	protein transport across the cell outer membrane
FYA11_RS22005	COG1450	Type ii and iii secretion system protein
FYA11_RS22010	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
FYA11_RS22015	COG1459	type II secretion system
FYA11_RS22020	COG2165	general secretion pathway protein
FYA11_RS22025	COG2165	general secretion pathway protein
FYA11_RS22030	COG2165	general secretion pathway protein
FYA11_RS22035	COG4795	General secretion pathway protein
FYA11_RS22040	COG3156	type II secretion system protein K
FYA11_RS22045	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
FYA11_RS22050	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
FYA11_RS22055	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
FYA11_RS22060	COG2193	ferroxidase activity
FYA11_RS22065	COG2906	2 iron, 2 sulfur cluster binding
FYA11_RS22070	COG3979	chitinase
FYA11_RS22125	COG2964	Protein conserved in bacteria
FYA11_RS22130	COG0545	Peptidyl-prolyl cis-trans isomerase
FYA11_RS22140	COG1047	Peptidyl-prolyl cis-trans
FYA11_RS22145	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
FYA11_RS22160	COG0488	(ABC) transporter
FYA11_RS22165	COG0429	hydrolase of the alpha beta-hydrolase fold
FYA11_RS22175	COG3954	Phosphoribulokinase
FYA11_RS22180	COG1765	OsmC-like protein
FYA11_RS22185	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FYA11_RS22190	COG1289	transmembrane transporter activity
FYA11_RS22195	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FYA11_RS22200	COG0512	Glutamine amidotransferase of anthranilate synthase
FYA11_RS22205	COG2184	nucleotidyltransferase activity
FYA11_RS22215	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
FYA11_RS22225	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FYA11_RS22230	COG2146	nitrite reductase [NAD(P)H] activity
FYA11_RS22235	COG2116	formate transmembrane transporter activity
FYA11_RS22250	COG0531	amino acid
FYA11_RS22255	COG2222	sugar isomerase
FYA11_RS22260	COG1082	Xylose isomerase domain protein TIM barrel
FYA11_RS22265	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYA11_RS22270	COG2188	Transcriptional regulator
FYA11_RS22275	COG0626	cystathionine gamma-synthase activity
FYA11_RS22290	COG1735	metal-dependent hydrolase with the TIM-barrel fold
FYA11_RS22295	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
FYA11_RS22300	COG3457	Alanine racemase
FYA11_RS22310	COG2188	Transcriptional regulator
FYA11_RS22320	COG0180	Tryptophanyl-tRNA synthetase
FYA11_RS22325	COG0546	phosphoglycolate phosphatase activity
FYA11_RS22330	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FYA11_RS22335	COG0338	D12 class N6 adenine-specific DNA methyltransferase
FYA11_RS22340	COG3266	domain, Protein
FYA11_RS22355	COG4796	Type ii and iii secretion system protein
FYA11_RS22370	COG3166	PFAM Fimbrial assembly family protein
FYA11_RS22375	COG4972	Pilus assembly protein
FYA11_RS22380	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
FYA11_RS22385	COG0494	nUDIX hydrolase
FYA11_RS22395	COG1011	Hydrolase
FYA11_RS22400	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
FYA11_RS22410	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
FYA11_RS22430	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FYA11_RS22435	COG2183	response to ionizing radiation
FYA11_RS22440	COG1918	ferrous iron import across plasma membrane
FYA11_RS22445	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
FYA11_RS22455	COG5464	transposase or invertase
FYA11_RS22465	COG1040	competence protein
FYA11_RS22475	COG2610	gluconate transmembrane transporter activity
FYA11_RS22480	COG1640	4-alpha-glucanotransferase
FYA11_RS22485	COG0058	SHG alpha-glucan phosphorylase activity
FYA11_RS22500	COG1690	Belongs to the RtcB family
FYA11_RS22505	COG4650	regulator
FYA11_RS22510	COG1349	DNA-binding transcription factor activity
FYA11_RS22525	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
FYA11_RS22535	COG0058	SHG alpha-glucan phosphorylase activity
FYA11_RS22560	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FYA11_RS22565	COG2095	MarC family integral membrane protein
FYA11_RS22570	COG2610	gluconate transmembrane transporter activity
FYA11_RS22575	COG3265	gluconokinase activity
FYA11_RS22580	COG1609	Transcriptional regulator
FYA11_RS22585	COG1741	Belongs to the pirin family
FYA11_RS22590	COG0673	inositol 2-dehydrogenase activity
FYA11_RS22595	COG1247	-acetyltransferase
FYA11_RS22600	COG3157	Type VI secretion system effector, Hcp
FYA11_RS22630	COG0405	Gamma-glutamyltransferase
FYA11_RS22640	COG0584	glycerophosphoryl diester phosphodiesterase
FYA11_RS22645	COG3842	ATPase activity
FYA11_RS22650	COG0395	ABC-type sugar transport system, permease component
FYA11_RS22655	COG1175	transmembrane transport
FYA11_RS22660	COG1653	transport
FYA11_RS22665	COG0410	ABC transporter
FYA11_RS22670	COG0411	ABC transporter
FYA11_RS22675	COG4177	L-phenylalanine transmembrane transporter activity
FYA11_RS22680	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYA11_RS22685	COG0683	leucine binding
FYA11_RS22690	COG0456	acetyltransferase
FYA11_RS22695	COG0683	leucine binding
FYA11_RS22700	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FYA11_RS22705	COG2177	Part of the ABC transporter FtsEX involved in
FYA11_RS22710	COG2884	Cell division ATP-binding protein ftsE
FYA11_RS22715	COG0552	protein localization to endoplasmic reticulum
FYA11_RS22720	COG0742	ribosomal rna small subunit methyltransferase
FYA11_RS22725	COG3776	membrane
FYA11_RS22735	COG3714	YhhN family
FYA11_RS22740	COG2217	Heavy metal translocating P-type atpase
FYA11_RS22750	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
FYA11_RS22760	COG0477	Major facilitator Superfamily
FYA11_RS22765	COG0628	permease
FYA11_RS22770	COG2091	lysine biosynthetic process via aminoadipic acid
FYA11_RS22775	COG0747	negative chemotaxis
FYA11_RS22780	COG0601	transmembrane transport
FYA11_RS22785	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA11_RS22790	COG0444	Belongs to the ABC transporter superfamily
FYA11_RS22795	COG1124	(ABC) transporter
FYA11_RS22960	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
FYA11_RS23075	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
FYA11_RS23095	COG3271	cysteine-type peptidase activity
FYA11_RS23095	COG2274	protein secretion by the type I secretion system
FYA11_RS23105	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
FYA11_RS23130	COG3451	type IV secretory pathway VirB4
FYA11_RS23170	COG2026	Addiction module toxin, RelE StbE family
FYA11_RS23235	COG0330	HflC and HflK could