locus-tag class description D0T88_RS00010 PF05840 Bacteriophage replication gene A protein (GPA) D0T88_RS00020 PF02661 Fic/DOC family D0T88_RS00020 PF17841 BID domain of Bartonella effector protein (Bep) D0T88_RS00110 PF07484 Phage Tail Collar Domain D0T88_RS00110 PF03335 Phage tail fibre repeat D0T88_RS00110 PF08400 Prophage tail fibre N-terminal D0T88_RS00115 PF02413 Caudovirales tail fibre assembly protein, lambda gpK D0T88_RS00155 PF04606 Ogr/Delta-like zinc finger D0T88_RS00165 PF01545 Cation efflux family D0T88_RS00165 PF16916 Dimerisation domain of Zinc Transporter D0T88_RS00170 PF00365 Phosphofructokinase D0T88_RS00175 PF01548 Transposase D0T88_RS00175 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS00185 PF02611 CDP-diacylglycerol pyrophosphatase D0T88_RS00190 PF00121 Triosephosphate isomerase D0T88_RS00195 PF07305 Protein of unknown function (DUF1454) D0T88_RS00200 PF05656 Protein of unknown function (DUF805) D0T88_RS00205 PF04175 Protein of unknown function (DUF406) D0T88_RS00210 PF00582 Universal stress protein family D0T88_RS00215 PF00970 Oxidoreductase FAD-binding domain D0T88_RS00215 PF00175 Oxidoreductase NAD-binding domain D0T88_RS00220 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded D0T88_RS00225 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D0T88_RS00225 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D0T88_RS00230 PF00230 Major intrinsic protein D0T88_RS00235 PF06005 Cell division protein ZapB D0T88_RS00245 PF01040 UbiA prenyltransferase family D0T88_RS00250 PF00004 ATPase family associated with various cellular activities (AAA) D0T88_RS00250 PF07724 AAA domain (Cdc48 subfamily) D0T88_RS00250 PF10431 C-terminal, D2-small domain, of ClpB protein D0T88_RS00255 PF00227 Proteasome subunit D0T88_RS00260 PF05036 Sporulation related domain D0T88_RS00265 PF00356 Bacterial regulatory proteins, lacI family D0T88_RS00270 PF00270 DEAD/DEAH box helicase D0T88_RS00270 PF00271 Helicase conserved C-terminal domain D0T88_RS00270 PF17764 3′ DNA-binding domain (3′BD) D0T88_RS00270 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D0T88_RS00270 PF18074 Primosomal protein N C-terminal domain D0T88_RS00275 PF01197 Ribosomal protein L31 D0T88_RS00295 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family D0T88_RS00300 PF01340 Met Apo-repressor, MetJ D0T88_RS00305 PF01053 Cys/Met metabolism PLP-dependent enzyme D0T88_RS00310 PF03447 Homoserine dehydrogenase, NAD binding domain D0T88_RS00310 PF00742 Homoserine dehydrogenase D0T88_RS00310 PF00696 Amino acid kinase family D0T88_RS00315 PF02219 Methylenetetrahydrofolate reductase D0T88_RS00320 PF00141 Peroxidase D0T88_RS00325 PF00892 EamA-like transporter family D0T88_RS00330 PF06940 Domain of unknown function (DUF1287) D0T88_RS00335 PF00465 Iron-containing alcohol dehydrogenase D0T88_RS00340 PF00923 Transaldolase/Fructose-6-phosphate aldolase D0T88_RS00345 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0T88_RS00345 PF00381 PTS HPr component phosphorylation site D0T88_RS00345 PF05524 PEP-utilising enzyme, N-terminal D0T88_RS00345 PF00391 PEP-utilising enzyme, mobile domain D0T88_RS00345 PF02896 PEP-utilising enzyme, TIM barrel domain D0T88_RS00355 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0T88_RS00360 PF01228 Glycine radical D0T88_RS00360 PF02901 Pyruvate formate lyase-like D0T88_RS00365 PF04055 Radical SAM superfamily D0T88_RS00370 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0T88_RS00375 PF12833 Helix-turn-helix domain D0T88_RS00380 PF00884 Sulfatase D0T88_RS00385 PF00311 Phosphoenolpyruvate carboxylase D0T88_RS00390 PF07687 Peptidase dimerisation domain D0T88_RS00390 PF01546 Peptidase family M20/M25/M40 D0T88_RS00395 PF02774 Semialdehyde dehydrogenase, dimerisation domain D0T88_RS00395 PF01118 Semialdehyde dehydrogenase, NAD binding domain D0T88_RS00400 PF00696 Amino acid kinase family D0T88_RS00405 PF14698 Argininosuccinate lyase C-terminal D0T88_RS00405 PF00206 Lyase D0T88_RS00410 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D0T88_RS00410 PF13378 Enolase C-terminal domain-like D0T88_RS00415 PF07690 Major Facilitator Superfamily D0T88_RS00420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS00420 PF03466 LysR substrate binding domain D0T88_RS00425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D0T88_RS00425 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS00430 PF00440 Bacterial regulatory proteins, tetR family D0T88_RS00435 PF07226 Protein of unknown function (DUF1422) D0T88_RS00440 PF05958 tRNA (Uracil-5-)-methyltransferase D0T88_RS00445 PF07715 TonB-dependent Receptor Plug Domain D0T88_RS00445 PF00593 TonB dependent receptor D0T88_RS00450 PF01177 Asp/Glu/Hydantoin racemase D0T88_RS00475 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D0T88_RS00475 PF01565 FAD binding domain D0T88_RS00480 PF02237 Biotin protein ligase C terminal domain D0T88_RS00480 PF08279 HTH domain D0T88_RS00480 PF03099 Biotin/lipoate A/B protein ligase family D0T88_RS00485 PF00485 Phosphoribulokinase / Uridine kinase family D0T88_RS00510 PF03144 Elongation factor Tu domain 2 D0T88_RS00510 PF03143 Elongation factor Tu C-terminal domain D0T88_RS00510 PF00009 Elongation factor Tu GTP binding domain D0T88_RS00515 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D0T88_RS00520 PF00467 KOW motif D0T88_RS00520 PF02357 Transcription termination factor nusG D0T88_RS00525 PF00298 Ribosomal protein L11, RNA binding domain D0T88_RS00525 PF03946 Ribosomal protein L11, N-terminal domain D0T88_RS00530 PF00687 Ribosomal protein L1p/L10e family D0T88_RS00535 PF00466 Ribosomal protein L10 D0T88_RS00540 PF16320 Ribosomal protein L7/L12 dimerisation domain D0T88_RS00540 PF00542 Ribosomal protein L7/L12 C-terminal domain D0T88_RS00545 PF04560 RNA polymerase Rpb2, domain 7 D0T88_RS00545 PF04563 RNA polymerase beta subunit D0T88_RS00545 PF04561 RNA polymerase Rpb2, domain 2 D0T88_RS00545 PF04565 RNA polymerase Rpb2, domain 3 D0T88_RS00545 PF10385 RNA polymerase beta subunit external 1 domain D0T88_RS00545 PF00562 RNA polymerase Rpb2, domain 6 D0T88_RS00550 PF04998 RNA polymerase Rpb1, domain 5 D0T88_RS00550 PF04983 RNA polymerase Rpb1, domain 3 D0T88_RS00550 PF04997 RNA polymerase Rpb1, domain 1 D0T88_RS00550 PF00623 RNA polymerase Rpb1, domain 2 D0T88_RS00550 PF05000 RNA polymerase Rpb1, domain 4 D0T88_RS00555 PF04055 Radical SAM superfamily D0T88_RS00555 PF06968 Biotin and Thiamin Synthesis associated domain D0T88_RS00560 PF05690 Thiazole biosynthesis protein ThiG D0T88_RS00565 PF02597 ThiS family D0T88_RS00570 PF00899 ThiF family D0T88_RS00575 PF02581 Thiamine monophosphate synthase D0T88_RS00580 PF13667 ThiC-associated domain D0T88_RS00580 PF01964 Radical SAM ThiC family D0T88_RS00585 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ D0T88_RS00590 PF09297 NADH pyrophosphatase zinc ribbon domain D0T88_RS00590 PF00293 NUDIX domain D0T88_RS00595 PF01208 Uroporphyrinogen decarboxylase (URO-D) D0T88_RS00600 PF04493 Endonuclease V D0T88_RS00605 PF04222 Protein of unknown function (DUF416) D0T88_RS00610 PF00216 Bacterial DNA-binding protein D0T88_RS00615 PF07356 Protein of unknown function (DUF1481) D0T88_RS00620 PF13801 Heavy-metal resistance D0T88_RS00625 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS00625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS00630 PF02954 Bacterial regulatory protein, Fis family D0T88_RS00630 PF00158 Sigma-54 interaction domain D0T88_RS00630 PF00072 Response regulator receiver domain D0T88_RS00635 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D0T88_RS00635 PF02844 Phosphoribosylglycinamide synthetase, N domain D0T88_RS00635 PF02843 Phosphoribosylglycinamide synthetase, C domain D0T88_RS00640 PF01808 AICARFT/IMPCHase bienzyme D0T88_RS00640 PF02142 MGS-like domain D0T88_RS00665 PF13673 Acetyltransferase (GNAT) domain D0T88_RS00670 PF04204 Homoserine O-succinyltransferase D0T88_RS00675 PF01274 Malate synthase D0T88_RS00680 PF00463 Isocitrate lyase family D0T88_RS00685 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) D0T88_RS00695 PF01614 Bacterial transcriptional regulator D0T88_RS00695 PF09339 IclR helix-turn-helix domain D0T88_RS00700 PF02574 Homocysteine S-methyltransferase D0T88_RS00700 PF02310 B12 binding domain D0T88_RS00700 PF00809 Pterin binding enzyme D0T88_RS00700 PF02607 B12 binding domain D0T88_RS00700 PF02965 Vitamin B12 dependent methionine synthase, activation domain D0T88_RS00705 PF02690 Na+/Pi-cotransporter D0T88_RS00710 PF03575 Peptidase family S51 D0T88_RS00715 PF01479 S4 domain D0T88_RS00715 PF00849 RNA pseudouridylate synthase D0T88_RS00720 PF11656 YjbD family (DUF3811) D0T88_RS00730 PF10127 RNA repair pathway DNA polymerase beta family D0T88_RS00735 PF06414 Zeta toxin D0T88_RS00740 PF01842 ACT domain D0T88_RS00740 PF00696 Amino acid kinase family D0T88_RS00745 PF00342 Phosphoglucose isomerase D0T88_RS00750 PF11106 Exopolysaccharide production protein YjbE D0T88_RS00755 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF D0T88_RS00760 PF06251 Capsule biosynthesis GfcC D0T88_RS00765 PF06082 Exopolysaccharide biosynthesis protein YbjH D0T88_RS00770 PF17089 Uncharacterised protein family D0T88_RS00775 PF06146 Phosphate-starvation-inducible E D0T88_RS00780 PF00083 Sugar (and other) transporter D0T88_RS00785 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS00790 PF14785 Maltose transport system permease protein MalF P2 domain D0T88_RS00790 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS00795 PF01547 Bacterial extracellular solute-binding protein D0T88_RS00800 PF17912 MalK OB fold domain D0T88_RS00800 PF00005 ABC transporter D0T88_RS00805 PF02264 LamB porin D0T88_RS00810 PF07148 Maltose operon periplasmic protein precursor (MalM) D0T88_RS00820 PF04345 Chorismate lyase D0T88_RS00825 PF01040 UbiA prenyltransferase family D0T88_RS00830 PF01553 Acyltransferase D0T88_RS00835 PF01219 Prokaryotic diacylglycerol kinase D0T88_RS00840 PF01726 LexA DNA binding domain D0T88_RS00840 PF00717 Peptidase S24-like D0T88_RS00845 PF01554 MatE D0T88_RS00850 PF05532 CsbD-like D0T88_RS00855 PF01475 Ferric uptake regulator family D0T88_RS00865 PF01207 Dihydrouridine synthase (Dus) D0T88_RS00870 PF09583 Phage shock protein G (Phageshock_PspG) D0T88_RS00875 PF08240 Alcohol dehydrogenase GroES-like domain D0T88_RS00875 PF00107 Zinc-binding dehydrogenase D0T88_RS00880 PF03796 DnaB-like helicase C terminal domain D0T88_RS00880 PF00772 DnaB-like helicase N terminal domain D0T88_RS00885 PF01168 Alanine racemase, N-terminal domain D0T88_RS00885 PF00842 Alanine racemase, C-terminal domain D0T88_RS00890 PF00155 Aminotransferase class I and II D0T88_RS00900 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) D0T88_RS00905 PF01894 Uncharacterised protein family UPF0047 D0T88_RS00910 PF04237 YjbR D0T88_RS00915 PF17760 UvrA interaction domain D0T88_RS00915 PF17755 UvrA DNA-binding domain D0T88_RS00915 PF00005 ABC transporter D0T88_RS00920 PF00436 Single-strand binding protein family D0T88_RS00925 PF15940 Family of unknown function D0T88_RS00930 PF12792 CSS motif domain associated with EAL D0T88_RS00930 PF00563 EAL domain D0T88_RS00935 PF12833 Helix-turn-helix domain D0T88_RS00940 PF00376 MerR family regulatory protein D0T88_RS00940 PF09278 MerR, DNA binding D0T88_RS00945 PF00860 Permease family D0T88_RS00950 PF00999 Sodium/hydrogen exchanger family D0T88_RS00955 PF00805 Pentapeptide repeats (8 copies) D0T88_RS00960 PF00474 Sodium:solute symporter family D0T88_RS00965 PF04341 Protein of unknown function, DUF485 D0T88_RS00970 PF13193 AMP-binding enzyme C-terminal domain D0T88_RS00970 PF00501 AMP-binding enzyme D0T88_RS00970 PF16177 Acetyl-coenzyme A synthetase N-terminus D0T88_RS00975 PF02335 Cytochrome c552 D0T88_RS00980 PF13435 Cytochrome c554 and c-prime D0T88_RS00980 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) D0T88_RS00985 PF00037 4Fe-4S binding domain D0T88_RS00985 PF13247 4Fe-4S dicluster domain D0T88_RS00990 PF03916 Polysulphide reductase, NrfD D0T88_RS00995 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D0T88_RS00995 PF01578 Cytochrome C assembly protein D0T88_RS01000 PF03918 Cytochrome C biogenesis protein D0T88_RS01010 PF00375 Sodium:dicarboxylate symporter family D0T88_RS01015 PF08238 Sel1 repeat D0T88_RS01025 PF02321 Outer membrane efflux protein D0T88_RS01030 PF04632 Fusaric acid resistance protein family D0T88_RS01035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0T88_RS01035 PF00529 HlyD membrane-fusion protein of T1SS D0T88_RS01040 PF17090 Uncharacterised protein family D0T88_RS01045 PF00753 Metallo-beta-lactamase superfamily D0T88_RS01045 PF14863 Alkyl sulfatase dimerisation D0T88_RS01045 PF14864 Alkyl sulfatase C-terminal D0T88_RS01050 PF00480 ROK family D0T88_RS01055 PF00834 Ribulose-phosphate 3 epimerase family D0T88_RS01060 PF02653 Branched-chain amino acid transport system / permease component D0T88_RS01065 PF00005 ABC transporter D0T88_RS01070 PF13407 Periplasmic binding protein domain D0T88_RS01075 PF01418 Helix-turn-helix domain, rpiR family D0T88_RS01075 PF01380 SIS domain D0T88_RS01080 PF02502 Ribose/Galactose Isomerase D0T88_RS01090 PF12706 Beta-lactamase superfamily domain D0T88_RS01095 PF00583 Acetyltransferase (GNAT) family D0T88_RS01105 PF07969 Amidohydrolase family D0T88_RS01110 PF00005 ABC transporter D0T88_RS01115 PF00005 ABC transporter D0T88_RS01120 PF06007 Phosphonate metabolism protein PhnJ D0T88_RS01125 PF05861 Bacterial phosphonate metabolism protein (PhnI) D0T88_RS01130 PF05845 Bacterial phosphonate metabolism protein (PhnH) D0T88_RS01135 PF06754 Phosphonate metabolism protein PhnG D0T88_RS01140 PF07702 UTRA domain D0T88_RS01140 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS01145 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS01155 PF00005 ABC transporter D0T88_RS01160 PF06983 3-demethylubiquinone-9 3-methyltransferase D0T88_RS01165 PF08274 PhnA Zinc-Ribbon D0T88_RS01165 PF03831 PhnA domain D0T88_RS01170 PF00350 Dynamin family D0T88_RS01175 PF13990 YjcZ-like protein D0T88_RS01180 PF08946 Osmosensory transporter coiled coil D0T88_RS01180 PF00083 Sugar (and other) transporter D0T88_RS01190 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS01190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS01195 PF00072 Response regulator receiver domain D0T88_RS01195 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS01200 PF00884 Sulfatase D0T88_RS01200 PF08019 Phosphoethanolamine transferase EptA/EptB D0T88_RS01205 PF13520 Amino acid permease D0T88_RS01210 PF12833 Helix-turn-helix domain D0T88_RS01215 PF01276 Orn/Lys/Arg decarboxylase, major domain D0T88_RS01215 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain D0T88_RS01215 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain D0T88_RS01220 PF12833 Helix-turn-helix domain D0T88_RS01225 PF02056 Family 4 glycosyl hydrolase D0T88_RS01225 PF11975 Family 4 glycosyl hydrolase C-terminal domain D0T88_RS01235 PF09997 Predicted membrane protein (DUF2238) D0T88_RS01240 PF05681 Fumarate hydratase (Fumerase) D0T88_RS01240 PF05683 Fumarase C-terminus D0T88_RS01245 PF03605 Anaerobic c4-dicarboxylate membrane transporter D0T88_RS01250 PF00072 Response regulator receiver domain D0T88_RS01255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS01255 PF00989 PAS fold D0T88_RS01255 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain D0T88_RS01255 PF17203 Single cache domain 3 D0T88_RS01260 PF06902 Divergent 4Fe-4S mono-cluster D0T88_RS01265 PF14542 GCN5-related N-acetyl-transferase D0T88_RS01270 PF11080 Endoribonuclease GhoS D0T88_RS01275 PF10753 Toxin GhoT_OrtT D0T88_RS01280 PF00152 tRNA synthetases class II (D, K and N) D0T88_RS01280 PF01336 OB-fold nucleic acid binding domain D0T88_RS01285 PF00854 POT family D0T88_RS01290 PF01276 Orn/Lys/Arg decarboxylase, major domain D0T88_RS01290 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain D0T88_RS01290 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain D0T88_RS01295 PF13520 Amino acid permease D0T88_RS01300 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS01300 PF18500 CadC C-terminal domain 1 D0T88_RS01315 PF11412 Disulphide bond corrector protein DsbC D0T88_RS01315 PF02683 Cytochrome C biogenesis protein transmembrane region D0T88_RS01320 PF03091 CutA1 divalent ion tolerance protein D0T88_RS01325 PF03605 Anaerobic c4-dicarboxylate membrane transporter D0T88_RS01330 PF00206 Lyase D0T88_RS01330 PF10415 Fumarase C C-terminus D0T88_RS01335 PF04186 FxsA cytoplasmic membrane protein D0T88_RS01340 PF13520 Amino acid permease D0T88_RS01345 PF00166 Chaperonin 10 Kd subunit D0T88_RS01350 PF00118 TCP-1/cpn60 chaperonin family D0T88_RS01355 PF13698 Domain of unknown function (DUF4156) D0T88_RS01360 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS01360 PF01548 Transposase D0T88_RS01365 PF15922 YjeJ-like D0T88_RS01370 PF04055 Radical SAM superfamily D0T88_RS01375 PF09285 Elongation factor P, C-terminal D0T88_RS01375 PF08207 Elongation factor P (EF-P) KOW-like domain D0T88_RS01375 PF01132 Elongation factor P (EF-P) OB domain D0T88_RS01380 PF08085 Entericidin EcnA/B family D0T88_RS01385 PF08085 Entericidin EcnA/B family D0T88_RS01390 PF00893 Small Multidrug Resistance protein D0T88_RS01395 PF08212 Lipocalin-like domain D0T88_RS01400 PF00144 Beta-lactamase D0T88_RS01405 PF02313 Fumarate reductase subunit D D0T88_RS01410 PF02300 Fumarate reductase subunit C D0T88_RS01415 PF13183 4Fe-4S dicluster domain D0T88_RS01415 PF13085 2Fe-2S iron-sulfur cluster binding domain D0T88_RS01420 PF02910 Fumarate reductase flavoprotein C-term D0T88_RS01420 PF00890 FAD binding domain D0T88_RS01425 PF00152 tRNA synthetases class II (D, K and N) D0T88_RS01430 PF13520 Amino acid permease D0T88_RS01435 PF00924 Mechanosensitive ion channel D0T88_RS01435 PF12794 Mechanosensitive ion channel inner membrane domain 1 D0T88_RS01435 PF12795 Mechanosensitive ion channel porin domain D0T88_RS01440 PF02666 Phosphatidylserine decarboxylase D0T88_RS01445 PF03193 RsgA GTPase D0T88_RS01450 PF00929 Exonuclease D0T88_RS01475 PF08331 Domain of unknown function (DUF1730) D0T88_RS01480 PF01256 Carbohydrate kinase D0T88_RS01480 PF03853 YjeF-related protein N-terminus D0T88_RS01485 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D0T88_RS01490 PF01520 N-acetylmuramoyl-L-alanine amidase D0T88_RS01495 PF08676 MutL C terminal dimerisation domain D0T88_RS01495 PF01119 DNA mismatch repair protein, C-terminal domain D0T88_RS01505 PF17209 Hfq protein D0T88_RS01510 PF16360 GTP-binding GTPase Middle Region D0T88_RS01510 PF13167 GTP-binding GTPase N-terminal D0T88_RS01510 PF01926 50S ribosome-binding GTPase D0T88_RS01515 PF01145 SPFH domain / Band 7 family D0T88_RS01515 PF12221 Bacterial membrane protein N terminal D0T88_RS01520 PF01145 SPFH domain / Band 7 family D0T88_RS01525 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) D0T88_RS01530 PF00709 Adenylosuccinate synthetase D0T88_RS01535 PF02082 Transcriptional regulator D0T88_RS01540 PF00773 RNB domain D0T88_RS01540 PF17876 Cold shock domain D0T88_RS01540 PF08206 Ribonuclease B OB domain D0T88_RS01540 PF08461 Ribonuclease R winged-helix domain D0T88_RS01540 PF00575 S1 RNA binding domain D0T88_RS01545 PF08032 RNA 2'-O ribose methyltransferase substrate binding D0T88_RS01545 PF00588 SpoU rRNA Methylase family D0T88_RS01550 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) D0T88_RS01555 PF04012 PspA/IM30 family D0T88_RS01560 PF10679 Protein of unknown function (DUF2491) D0T88_RS01565 PF03994 Domain of Unknown Function (DUF350) D0T88_RS01570 PF06693 Protein of unknown function (DUF1190) D0T88_RS01575 PF03738 Glutathionylspermidine synthase preATP-grasp D0T88_RS01580 PF18158 Adaptive response protein AidB N-terminal domain D0T88_RS01580 PF02770 Acyl-CoA dehydrogenase, middle domain D0T88_RS01580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D0T88_RS01585 PF07338 Protein of unknown function (DUF1471) D0T88_RS01590 PF07338 Protein of unknown function (DUF1471) D0T88_RS01595 PF00326 Prolyl oligopeptidase family D0T88_RS01600 PF00455 DeoR C terminal sensor domain D0T88_RS01600 PF08220 DeoR-like helix-turn-helix domain D0T88_RS01610 PF03611 PTS system sugar-specific permease component D0T88_RS01615 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0T88_RS01620 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0T88_RS01625 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D0T88_RS01630 PF01261 Xylose isomerase-like TIM barrel D0T88_RS01635 PF00596 Class II Aldolase and Adducin N-terminal domain D0T88_RS01640 PF07338 Protein of unknown function (DUF1471) D0T88_RS01645 PF01250 Ribosomal protein S6 D0T88_RS01650 PF00436 Single-strand binding protein family D0T88_RS01655 PF01084 Ribosomal protein S18 D0T88_RS01660 PF03948 Ribosomal protein L9, C-terminal domain D0T88_RS01660 PF01281 Ribosomal protein L9, N-terminal domain D0T88_RS01665 PF03480 Bacterial extracellular solute-binding protein, family 7 D0T88_RS01670 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D0T88_RS01675 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D0T88_RS01680 PF02910 Fumarate reductase flavoprotein C-term D0T88_RS01680 PF00890 FAD binding domain D0T88_RS01685 PF01144 Coenzyme A transferase D0T88_RS01690 PF00378 Enoyl-CoA hydratase/isomerase D0T88_RS01705 PF17938 Tetracyclin repressor-like, C-terminal domain D0T88_RS01710 PF04225 Opacity-associated protein A LysM-like domain D0T88_RS01710 PF08525 Opacity-associated protein A N-terminal motif D0T88_RS01715 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D0T88_RS01715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D0T88_RS01720 PF00324 Amino acid permease D0T88_RS01725 PF01814 Hemerythrin HHE cation binding domain D0T88_RS01725 PF04405 Domain of Unknown function (DUF542) D0T88_RS01730 PF00892 EamA-like transporter family D0T88_RS01735 PF05368 NmrA-like family D0T88_RS01740 PF01638 HxlR-like helix-turn-helix D0T88_RS01745 PF02872 5'-nucleotidase, C-terminal domain D0T88_RS01745 PF00149 Calcineurin-like phosphoesterase D0T88_RS01750 PF00459 Inositol monophosphatase family D0T88_RS01755 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) D0T88_RS01760 PF06526 Protein of unknown function (DUF1107) D0T88_RS01765 PF01595 Cyclin M transmembrane N-terminal domain D0T88_RS01765 PF00571 CBS domain D0T88_RS01765 PF03471 Transporter associated domain D0T88_RS01770 PF01625 Peptide methionine sulfoxide reductase D0T88_RS01775 PF01103 Surface antigen D0T88_RS01775 PF17243 POTRA domain TamA domain 1 D0T88_RS01775 PF07244 Surface antigen variable number repeat D0T88_RS01780 PF04357 TamB, inner membrane protein subunit of TAM complex D0T88_RS01785 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like D0T88_RS01790 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin D0T88_RS01795 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system D0T88_RS01800 PF00719 Inorganic pyrophosphatase D0T88_RS01805 PF13407 Periplasmic binding protein domain D0T88_RS01810 PF00005 ABC transporter D0T88_RS01815 PF02653 Branched-chain amino acid transport system / permease component D0T88_RS01820 PF02653 Branched-chain amino acid transport system / permease component D0T88_RS01825 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain D0T88_RS01830 PF02875 Mur ligase family, glutamate ligase domain D0T88_RS01830 PF08245 Mur ligase middle domain D0T88_RS01830 PF01225 Mur ligase family, catalytic domain D0T88_RS01835 PF04751 Protein of unknown function (DUF615) D0T88_RS01840 PF01523 Putative modulator of DNA gyrase D0T88_RS01845 PF07361 Cytochrome b562 D0T88_RS01855 PF13597 Anaerobic ribonucleoside-triphosphate reductase D0T88_RS01855 PF03477 ATP cone domain D0T88_RS01860 PF11941 Domain of unknown function (DUF3459) D0T88_RS01860 PF00128 Alpha amylase, catalytic domain D0T88_RS01865 PF02378 Phosphotransferase system, EIIC D0T88_RS01865 PF00367 phosphotransferase system, EIIB D0T88_RS01870 PF00356 Bacterial regulatory proteins, lacI family D0T88_RS01875 PF17059 MgtA leader peptide D0T88_RS01880 PF00689 Cation transporting ATPase, C-terminus D0T88_RS01880 PF00690 Cation transporter/ATPase, N-terminus D0T88_RS01885 PF01548 Transposase D0T88_RS01885 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS01890 PF01042 Endoribonuclease L-PSP D0T88_RS01895 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain D0T88_RS01895 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain D0T88_RS01900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D0T88_RS01900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D0T88_RS01905 PF08052 PyrBI operon leader peptide D0T88_RS01910 PF01042 Endoribonuclease L-PSP D0T88_RS01920 PF00440 Bacterial regulatory proteins, tetR family D0T88_RS01925 PF04074 YhcH/YjgK/YiaL D0T88_RS01940 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D0T88_RS01940 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D0T88_RS01945 PF06877 Regulator of ribonuclease activity B D0T88_RS01950 PF00583 Acetyltransferase (GNAT) family D0T88_RS01955 PF05987 Bacterial protein of unknown function (DUF898) D0T88_RS01960 PF08264 Anticodon-binding domain of tRNA D0T88_RS01960 PF10458 Valyl tRNA synthetase tRNA binding arm D0T88_RS01960 PF00133 tRNA synthetases class I (I, L, M and V) D0T88_RS01965 PF04364 DNA polymerase III chi subunit, HolC D0T88_RS01970 PF02789 Cytosol aminopeptidase family, N-terminal domain D0T88_RS01970 PF00883 Cytosol aminopeptidase family, catalytic domain D0T88_RS01975 PF03739 Lipopolysaccharide export system permease LptF/LptG D0T88_RS01980 PF03739 Lipopolysaccharide export system permease LptF/LptG D0T88_RS01985 PF05872 Bacterial protein of unknown function (DUF853) D0T88_RS01990 PF00356 Bacterial regulatory proteins, lacI family D0T88_RS01995 PF02447 GntP family permease D0T88_RS02000 PF00106 short chain dehydrogenase D0T88_RS02005 PF00107 Zinc-binding dehydrogenase D0T88_RS02005 PF08240 Alcohol dehydrogenase GroES-like domain D0T88_RS02010 PF01202 Shikimate kinase D0T88_RS02015 PF08240 Alcohol dehydrogenase GroES-like domain D0T88_RS02015 PF00107 Zinc-binding dehydrogenase D0T88_RS02035 PF01555 DNA methylase D0T88_RS02035 PF18273 Type III R-M EcoP15I C-terminal domain D0T88_RS02040 PF04851 Type III restriction enzyme, res subunit D0T88_RS02040 PF08774 VRR-NUC domain D0T88_RS02060 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase D0T88_RS02070 PF06178 Oligogalacturonate-specific porin protein (KdgM) D0T88_RS02075 PF00589 Phage integrase family D0T88_RS02080 PF00589 Phage integrase family D0T88_RS02085 PF00419 Fimbrial protein D0T88_RS02090 PF00419 Fimbrial protein D0T88_RS02095 PF02753 Pili assembly chaperone PapD, C-terminal domain D0T88_RS02095 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D0T88_RS02100 PF13954 PapC N-terminal domain D0T88_RS02100 PF13953 PapC C-terminal domain D0T88_RS02100 PF00577 Outer membrane usher protein D0T88_RS02105 PF00419 Fimbrial protein D0T88_RS02115 PF00419 Fimbrial protein D0T88_RS02115 PF09160 FimH, mannose binding D0T88_RS02120 PF02447 GntP family permease D0T88_RS02125 PF03786 D-mannonate dehydratase (UxuA) D0T88_RS02130 PF01232 Mannitol dehydrogenase Rossmann domain D0T88_RS02130 PF08125 Mannitol dehydrogenase C-terminal domain D0T88_RS02135 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS02135 PF07729 FCD domain D0T88_RS02140 PF10887 Protein of unknown function (DUF2686) D0T88_RS02150 PF04965 Gene 25-like lysozyme D0T88_RS02155 PF03466 LysR substrate binding domain D0T88_RS02155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS02160 PF01979 Amidohydrolase family D0T88_RS02165 PF07670 Nucleoside recognition D0T88_RS02170 PF07670 Nucleoside recognition D0T88_RS02175 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family D0T88_RS02180 PF06779 Uncharacterised MFS-type transporter YbfB D0T88_RS02185 PF06977 SdiA-regulated D0T88_RS02190 PF11823 Protein of unknown function (DUF3343) D0T88_RS02195 PF01869 BadF/BadG/BcrA/BcrD ATPase family D0T88_RS02200 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component D0T88_RS02205 PF04286 Protein of unknown function (DUF445) D0T88_RS02210 PF07690 Major Facilitator Superfamily D0T88_RS02215 PF04754 Putative transposase, YhgA-like D0T88_RS02220 PF00155 Aminotransferase class I and II D0T88_RS02220 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS02225 PF06568 Domain of unknown function (DUF1127) D0T88_RS02230 PF01804 Penicillin amidase D0T88_RS02235 PF07683 Cobalamin synthesis protein cobW C-terminal domain D0T88_RS02235 PF02492 CobW/HypB/UreG, nucleotide-binding domain D0T88_RS02240 PF04328 Selenoprotein, putative D0T88_RS02245 PF02554 Carbon starvation protein CstA D0T88_RS02245 PF13722 5TM C-terminal transporter carbon starvation CstA D0T88_RS02250 PF01613 Flavin reductase like domain D0T88_RS02255 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal D0T88_RS02255 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal D0T88_RS02265 PF07690 Major Facilitator Superfamily D0T88_RS02270 PF03328 HpcH/HpaI aldolase/citrate lyase family D0T88_RS02275 PF01557 Fumarylacetoacetate (FAA) hydrolase family D0T88_RS02280 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase D0T88_RS02285 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase D0T88_RS02290 PF00171 Aldehyde dehydrogenase family D0T88_RS02295 PF01557 Fumarylacetoacetate (FAA) hydrolase family D0T88_RS02300 PF01047 MarR family D0T88_RS02305 PF00672 HAMP domain D0T88_RS02305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0T88_RS02305 PF02203 Tar ligand binding domain homologue D0T88_RS02310 PF07690 Major Facilitator Superfamily D0T88_RS02315 PF07729 FCD domain D0T88_RS02315 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS02320 PF00107 Zinc-binding dehydrogenase D0T88_RS02320 PF08240 Alcohol dehydrogenase GroES-like domain D0T88_RS02325 PF00884 Sulfatase D0T88_RS02330 PF10696 Protein of unknown function (DUF2501) D0T88_RS02335 PF01695 IstB-like ATP binding protein D0T88_RS02340 PF17948 DnaT DNA-binding domain D0T88_RS02345 PF12821 Threonine/Serine exporter, ThrE D0T88_RS02350 PF06738 Putative threonine/serine exporter D0T88_RS02355 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS02360 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS02365 PF11575 FhuF 2Fe-2S C-terminal domain D0T88_RS02365 PF06276 Ferric iron reductase FhuF-like transporter D0T88_RS02370 PF07256 Protein of unknown function (DUF1435) D0T88_RS02390 PF05175 Methyltransferase small domain D0T88_RS02390 PF08468 Methyltransferase small domain N-terminal D0T88_RS02395 PF03603 DNA polymerase III psi subunit D0T88_RS02400 PF00583 Acetyltransferase (GNAT) family D0T88_RS02405 PF13419 Haloacid dehalogenase-like hydrolase D0T88_RS02435 PF10065 Uncharacterized conserved protein (DUF2303) D0T88_RS02445 PF00717 Peptidase S24-like D0T88_RS02450 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT D0T88_RS02475 PF06069 PerC transcriptional activator D0T88_RS02480 PF05869 DNA N-6-adenine-methyltransferase (Dam) D0T88_RS02485 PF00717 Peptidase S24-like D0T88_RS02485 PF01726 LexA DNA binding domain D0T88_RS02490 PF05866 Endodeoxyribonuclease RusA D0T88_RS02500 PF06147 Protein of unknown function (DUF968) D0T88_RS02505 PF06530 Phage antitermination protein Q D0T88_RS02520 PF04971 Bacteriophage P21 holin S D0T88_RS02525 PF07041 Protein of unknown function (DUF1327) D0T88_RS02535 PF13005 zinc-finger binding domain of transposase IS66 D0T88_RS02535 PF03050 Transposase IS66 family D0T88_RS02535 PF13007 Transposase C of IS166 homeodomain D0T88_RS02535 PF13817 IS66 C-terminal element D0T88_RS02540 PF05717 IS66 Orf2 like protein D0T88_RS02555 PF06085 Lipoprotein Rz1 precursor D0T88_RS02580 PF04860 Phage portal protein D0T88_RS02665 PF03692 Putative zinc- or iron-chelating domain D0T88_RS02680 PF06183 DinI-like family D0T88_RS02685 PF00009 Elongation factor Tu GTP binding domain D0T88_RS02685 PF03144 Elongation factor Tu domain 2 D0T88_RS02685 PF16658 Class II release factor RF3, C-terminal domain D0T88_RS02690 PF04972 BON domain D0T88_RS02695 PF07043 Protein of unknown function (DUF1328) D0T88_RS02700 PF01734 Patatin-like phospholipase D0T88_RS02705 PF01026 TatD related DNase D0T88_RS02710 PF04055 Radical SAM superfamily D0T88_RS02715 PF11230 Protein of unknown function (DUF3029) D0T88_RS02720 PF01791 DeoC/LacD family aldolase D0T88_RS02725 PF00591 Glycosyl transferase family, a/b domain D0T88_RS02725 PF02885 Glycosyl transferase family, helical bundle domain D0T88_RS02725 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain D0T88_RS02730 PF01676 Metalloenzyme superfamily D0T88_RS02735 PF01048 Phosphorylase superfamily D0T88_RS02745 PF10437 Bacterial lipoate protein ligase C-terminus D0T88_RS02745 PF03099 Biotin/lipoate A/B protein ligase family D0T88_RS02750 PF10144 Bacterial virulence factor haemolysin D0T88_RS02755 PF18429 Domain of unknown function (DUF5609) D0T88_RS02760 PF18073 Rubredoxin metal binding domain D0T88_RS02765 PF13521 AAA domain D0T88_RS02765 PF01381 Helix-turn-helix D0T88_RS02770 PF12848 ABC transporter D0T88_RS02770 PF00005 ABC transporter D0T88_RS02775 PF01464 Transglycosylase SLT domain D0T88_RS02775 PF14718 Soluble lytic murein transglycosylase L domain D0T88_RS02780 PF01371 Trp repressor protein D0T88_RS02785 PF01931 Protein of unknown function DUF84 D0T88_RS02790 PF00300 Histidine phosphatase superfamily (branch 1) D0T88_RS02795 PF12833 Helix-turn-helix domain D0T88_RS02795 PF06445 GyrI-like small molecule binding domain D0T88_RS02800 PF05981 CreA protein D0T88_RS02805 PF00072 Response regulator receiver domain D0T88_RS02805 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS02810 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS02810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS02810 PF00672 HAMP domain D0T88_RS02815 PF06123 Inner membrane protein CreD D0T88_RS02820 PF00072 Response regulator receiver domain D0T88_RS02820 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS02830 PF00588 SpoU rRNA Methylase family D0T88_RS02835 PF08254 Threonine leader peptide D0T88_RS02840 PF01842 ACT domain D0T88_RS02840 PF03447 Homoserine dehydrogenase, NAD binding domain D0T88_RS02840 PF00696 Amino acid kinase family D0T88_RS02840 PF13840 ACT domain D0T88_RS02840 PF00742 Homoserine dehydrogenase D0T88_RS02845 PF08544 GHMP kinases C terminal D0T88_RS02845 PF00288 GHMP kinases N terminal domain D0T88_RS02850 PF14821 Threonine synthase N terminus D0T88_RS02850 PF00291 Pyridoxal-phosphate dependent enzyme D0T88_RS02855 PF10697 Protein of unknown function (DUF2502) D0T88_RS02860 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS02860 PF01548 Transposase D0T88_RS02865 PF03883 Peroxide stress protein YaaA D0T88_RS02870 PF01235 Sodium:alanine symporter family D0T88_RS02875 PF00923 Transaldolase/Fructose-6-phosphate aldolase D0T88_RS02880 PF00994 Probable molybdopterin binding domain D0T88_RS02885 PF01184 GPR1/FUN34/yaaH family D0T88_RS02890 PF03981 Ubiquinol-cytochrome C chaperone D0T88_RS02890 PF13099 Domain of unknown function (DUF3944) D0T88_RS02895 PF10807 Protein of unknown function (DUF2541) D0T88_RS02900 PF00012 Hsp70 protein D0T88_RS02905 PF00226 DnaJ domain D0T88_RS02905 PF01556 DnaJ C terminal domain D0T88_RS02905 PF00684 DnaJ central domain D0T88_RS02910 PF01848 Hok/gef family D0T88_RS02915 PF06965 Na+/H+ antiporter 1 D0T88_RS02920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS02920 PF03466 LysR substrate binding domain D0T88_RS02940 PF01649 Ribosomal protein S20 D0T88_RS02945 PF10837 Protein of unknown function (DUF2575) D0T88_RS02950 PF06574 FAD synthetase D0T88_RS02950 PF01687 Riboflavin kinase D0T88_RS02955 PF08264 Anticodon-binding domain of tRNA D0T88_RS02955 PF00133 tRNA synthetases class I (I, L, M and V) D0T88_RS02955 PF06827 Zinc finger found in FPG and IleRS D0T88_RS02960 PF01252 Signal peptidase (SPase) II D0T88_RS02965 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D0T88_RS02970 PF02401 LytB protein D0T88_RS02975 PF01156 Inosine-uridine preferring nucleoside hydrolase D0T88_RS02980 PF01113 Dihydrodipicolinate reductase, N-terminus D0T88_RS02980 PF05173 Dihydrodipicolinate reductase, C-terminus D0T88_RS02985 PF00117 Glutamine amidotransferase class-I D0T88_RS02985 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D0T88_RS02990 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D0T88_RS02990 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D0T88_RS02990 PF02142 MGS-like domain D0T88_RS02995 PF07180 CaiF/GrlA transcriptional regulator D0T88_RS03000 PF00132 Bacterial transferase hexapeptide (six repeats) D0T88_RS03005 PF00378 Enoyl-CoA hydratase/isomerase D0T88_RS03010 PF13193 AMP-binding enzyme C-terminal domain D0T88_RS03010 PF00501 AMP-binding enzyme D0T88_RS03015 PF02515 CoA-transferase family III D0T88_RS03020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D0T88_RS03020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D0T88_RS03020 PF02770 Acyl-CoA dehydrogenase, middle domain D0T88_RS03025 PF02028 BCCT, betaine/carnitine/choline family transporter D0T88_RS03030 PF01012 Electron transfer flavoprotein domain D0T88_RS03035 PF01012 Electron transfer flavoprotein domain D0T88_RS03035 PF00766 Electron transfer flavoprotein FAD-binding domain D0T88_RS03040 PF01494 FAD binding domain D0T88_RS03050 PF00083 Sugar (and other) transporter D0T88_RS03055 PF02525 Flavodoxin-like fold D0T88_RS03060 PF02254 TrkA-N domain D0T88_RS03060 PF00999 Sodium/hydrogen exchanger family D0T88_RS03065 PF00186 Dihydrofolate reductase D0T88_RS03070 PF00149 Calcineurin-like phosphoesterase D0T88_RS03075 PF04379 ApaG domain D0T88_RS03080 PF00398 Ribosomal RNA adenine dimethylase D0T88_RS03085 PF04166 Pyridoxal phosphate biosynthetic protein PdxA D0T88_RS03090 PF00639 PPIC-type PPIASE domain D0T88_RS03090 PF09312 SurA N-terminal domain D0T88_RS03095 PF03968 OstA-like protein D0T88_RS03095 PF04453 LPS transport system D D0T88_RS03100 PF05099 Tellurite resistance protein TerB D0T88_RS03100 PF00226 DnaJ domain D0T88_RS03105 PF00849 RNA pseudouridylate synthase D0T88_RS03110 PF00271 Helicase conserved C-terminal domain D0T88_RS03110 PF12137 RNA polymerase recycling family C-terminal D0T88_RS03110 PF00176 SNF2 family N-terminal domain D0T88_RS03110 PF18339 RapA N-terminal Tudor like domain 1 D0T88_RS03110 PF18337 RapA N-terminal Tudor like domain D0T88_RS03115 PF00136 DNA polymerase family B D0T88_RS03115 PF03104 DNA polymerase family B, exonuclease domain D0T88_RS03120 PF00596 Class II Aldolase and Adducin N-terminal domain D0T88_RS03125 PF11762 L-arabinose isomerase C-terminal domain D0T88_RS03125 PF02610 L-arabinose isomerase D0T88_RS03130 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D0T88_RS03135 PF02311 AraC-like ligand binding domain D0T88_RS03135 PF12833 Helix-turn-helix domain D0T88_RS03140 PF09335 SNARE associated Golgi protein D0T88_RS03145 PF00005 ABC transporter D0T88_RS03150 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS03160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0T88_RS03160 PF12793 Sugar transport-related sRNA regulator N-term D0T88_RS03170 PF07690 Major Facilitator Superfamily D0T88_RS03175 PF00694 Aconitase C-terminal domain D0T88_RS03180 PF00330 Aconitase family (aconitate hydratase) D0T88_RS03185 PF00180 Isocitrate/isopropylmalate dehydrogenase D0T88_RS03190 PF08502 LeuA allosteric (dimerisation) domain D0T88_RS03190 PF00682 HMGL-like D0T88_RS03195 PF08054 Leucine operon leader peptide D0T88_RS03200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS03200 PF03466 LysR substrate binding domain D0T88_RS03210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D0T88_RS03210 PF00205 Thiamine pyrophosphate enzyme, central domain D0T88_RS03210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D0T88_RS03215 PF10369 Small subunit of acetolactate synthase D0T88_RS03225 PF00356 Bacterial regulatory proteins, lacI family D0T88_RS03225 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D0T88_RS03230 PF02381 MraZ protein, putative antitoxin-like D0T88_RS03235 PF01795 MraW methylase family D0T88_RS03240 PF04999 Cell division protein FtsL D0T88_RS03245 PF03717 Penicillin-binding Protein dimerisation domain D0T88_RS03245 PF00905 Penicillin binding protein transpeptidase domain D0T88_RS03250 PF08245 Mur ligase middle domain D0T88_RS03250 PF02875 Mur ligase family, glutamate ligase domain D0T88_RS03250 PF01225 Mur ligase family, catalytic domain D0T88_RS03255 PF01225 Mur ligase family, catalytic domain D0T88_RS03255 PF02875 Mur ligase family, glutamate ligase domain D0T88_RS03255 PF08245 Mur ligase middle domain D0T88_RS03260 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D0T88_RS03260 PF00953 Glycosyl transferase family 4 D0T88_RS03265 PF02875 Mur ligase family, glutamate ligase domain D0T88_RS03265 PF08245 Mur ligase middle domain D0T88_RS03270 PF01098 Cell cycle protein D0T88_RS03275 PF04101 Glycosyltransferase family 28 C-terminal domain D0T88_RS03275 PF03033 Glycosyltransferase family 28 N-terminal domain D0T88_RS03280 PF08245 Mur ligase middle domain D0T88_RS03280 PF02875 Mur ligase family, glutamate ligase domain D0T88_RS03280 PF01225 Mur ligase family, catalytic domain D0T88_RS03285 PF01820 D-ala D-ala ligase N-terminus D0T88_RS03285 PF07478 D-ala D-ala ligase C-terminus D0T88_RS03290 PF08478 POTRA domain, FtsQ-type D0T88_RS03290 PF03799 Cell division protein FtsQ D0T88_RS03295 PF02491 SHS2 domain inserted in FTSA D0T88_RS03300 PF00091 Tubulin/FtsZ family, GTPase domain D0T88_RS03300 PF12327 FtsZ family, C-terminal domain D0T88_RS03305 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D0T88_RS03310 PF06558 Secretion monitor precursor protein (SecM) D0T88_RS03315 PF01043 SecA preprotein cross-linking domain D0T88_RS03315 PF07517 SecA DEAD-like domain D0T88_RS03315 PF07516 SecA Wing and Scaffold domain D0T88_RS03315 PF02810 SEC-C motif D0T88_RS03320 PF00293 NUDIX domain D0T88_RS03325 PF03884 DNA gyrase inhibitor YacG D0T88_RS03330 PF07072 Cell division protein D0T88_RS03335 PF01121 Dephospho-CoA kinase D0T88_RS03345 PF00478 IMP dehydrogenase / GMP reductase domain D0T88_RS03350 PF00482 Type II secretion system (T2SS), protein F D0T88_RS03355 PF00437 Type II/IV secretion system protein D0T88_RS03355 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D0T88_RS03360 PF07963 Prokaryotic N-terminal methylation motif D0T88_RS03365 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D0T88_RS03365 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D0T88_RS03370 PF01510 N-acetylmuramoyl-L-alanine amidase D0T88_RS03375 PF17113 Regulatory signalling modulator protein AmpE D0T88_RS03380 PF00324 Amino acid permease D0T88_RS03385 PF07729 FCD domain D0T88_RS03385 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS03390 PF17831 Pyruvate dehydrogenase E1 component middle domain D0T88_RS03390 PF00456 Transketolase, thiamine diphosphate binding domain D0T88_RS03395 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D0T88_RS03395 PF00364 Biotin-requiring enzyme D0T88_RS03395 PF02817 e3 binding domain D0T88_RS03400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D0T88_RS03400 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS03405 PF11737 Protein of unknown function (DUF3300) D0T88_RS03410 PF06434 Aconitate hydratase 2 N-terminus D0T88_RS03410 PF11791 Aconitate B N-terminal domain D0T88_RS03410 PF00330 Aconitase family (aconitate hydratase) D0T88_RS03415 PF06062 Uncharacterised protein family (UPF0231) D0T88_RS03420 PF02675 S-adenosylmethionine decarboxylase D0T88_RS03425 PF17284 Spermidine synthase tetramerisation domain D0T88_RS03430 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) D0T88_RS03435 PF07731 Multicopper oxidase D0T88_RS03435 PF07732 Multicopper oxidase D0T88_RS03435 PF00394 Multicopper oxidase D0T88_RS03440 PF01011 PQQ enzyme repeat D0T88_RS03445 PF00156 Phosphoribosyl transferase domain D0T88_RS03450 PF00484 Carbonic anhydrase D0T88_RS03455 PF00005 ABC transporter D0T88_RS03460 PF01061 ABC-2 type transporter D0T88_RS03465 PF03610 PTS system fructose IIA component D0T88_RS03470 PF01522 Polysaccharide deacetylase D0T88_RS03475 PF02261 Aspartate decarboxylase D0T88_RS03480 PF04754 Putative transposase, YhgA-like D0T88_RS03485 PF02569 Pantoate-beta-alanine ligase D0T88_RS03490 PF02548 Ketopantoate hydroxymethyltransferase D0T88_RS03495 PF00419 Fimbrial protein D0T88_RS03500 PF00419 Fimbrial protein D0T88_RS03505 PF00419 Fimbrial protein D0T88_RS03510 PF00419 Fimbrial protein D0T88_RS03515 PF00577 Outer membrane usher protein D0T88_RS03515 PF13953 PapC C-terminal domain D0T88_RS03515 PF13954 PapC N-terminal domain D0T88_RS03520 PF02753 Pili assembly chaperone PapD, C-terminal domain D0T88_RS03520 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D0T88_RS03525 PF00419 Fimbrial protein D0T88_RS03530 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D0T88_RS03535 PF01743 Poly A polymerase head domain D0T88_RS03535 PF12626 Polymerase A arginine-rich C-terminus D0T88_RS03535 PF12627 Probable RNA and SrmB- binding site of polymerase A D0T88_RS03540 PF00749 tRNA synthetases class I (E and Q), catalytic domain D0T88_RS03545 PF01258 Prokaryotic dksA/traR C4-type zinc finger D0T88_RS03550 PF17746 SfsA N-terminal OB domain D0T88_RS03550 PF03749 Sugar fermentation stimulation protein RE domain D0T88_RS03555 PF02834 LigT like Phosphoesterase D0T88_RS03560 PF00270 DEAD/DEAH box helicase D0T88_RS03560 PF04408 Helicase associated domain (HA2) D0T88_RS03560 PF00271 Helicase conserved C-terminal domain D0T88_RS03560 PF08482 ATP-dependent helicase C-terminal D0T88_RS03565 PF00905 Penicillin binding protein transpeptidase domain D0T88_RS03565 PF00912 Transglycosylase D0T88_RS03565 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal D0T88_RS03565 PF14814 Bifunctional transglycosylase second domain D0T88_RS03570 PF00593 TonB dependent receptor D0T88_RS03570 PF07715 TonB-dependent Receptor Plug Domain D0T88_RS03575 PF00005 ABC transporter D0T88_RS03580 PF01497 Periplasmic binding protein D0T88_RS03585 PF01032 FecCD transport family D0T88_RS03590 PF00202 Aminotransferase class-III D0T88_RS03595 PF00654 Voltage gated chloride channel D0T88_RS03605 PF01521 Iron-sulphur cluster biosynthesis D0T88_RS03610 PF03458 UPF0126 domain D0T88_RS03615 PF01497 Periplasmic binding protein D0T88_RS03620 PF01048 Phosphorylase superfamily D0T88_RS03625 PF01966 HD domain D0T88_RS03625 PF13286 Phosphohydrolase-associated domain D0T88_RS03630 PF00595 PDZ domain D0T88_RS03635 PF05651 Putative sugar diacid recognition D0T88_RS03635 PF13556 PucR C-terminal helix-turn-helix domain D0T88_RS03635 PF17853 GGDEF-like domain D0T88_RS03640 PF11944 Protein of unknown function (DUF3461) D0T88_RS03645 PF00132 Bacterial transferase hexapeptide (six repeats) D0T88_RS03645 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D0T88_RS03645 PF14602 Hexapeptide repeat of succinyl-transferase D0T88_RS03650 PF01909 Nucleotidyltransferase domain D0T88_RS03650 PF01842 ACT domain D0T88_RS03650 PF08335 GlnD PII-uridylyltransferase D0T88_RS03650 PF01966 HD domain D0T88_RS03655 PF00557 Metallopeptidase family M24 D0T88_RS03660 PF00318 Ribosomal protein S2 D0T88_RS03665 PF00889 Elongation factor TS D0T88_RS03670 PF00696 Amino acid kinase family D0T88_RS03675 PF01765 Ribosome recycling factor D0T88_RS03680 PF13288 DXP reductoisomerase C-terminal domain D0T88_RS03680 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D0T88_RS03680 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D0T88_RS03685 PF01255 Putative undecaprenyl diphosphate synthase D0T88_RS03695 PF02163 Peptidase family M50 D0T88_RS03695 PF17820 PDZ domain D0T88_RS03700 PF07244 Surface antigen variable number repeat D0T88_RS03700 PF01103 Surface antigen D0T88_RS03705 PF03938 Outer membrane protein (OmpH-like) D0T88_RS03710 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D0T88_RS03710 PF00132 Bacterial transferase hexapeptide (six repeats) D0T88_RS03715 PF07977 FabA-like domain D0T88_RS03720 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D0T88_RS03720 PF00132 Bacterial transferase hexapeptide (six repeats) D0T88_RS03725 PF02684 Lipid-A-disaccharide synthetase D0T88_RS03730 PF01351 Ribonuclease HII D0T88_RS03735 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D0T88_RS03735 PF01336 OB-fold nucleic acid binding domain D0T88_RS03735 PF02811 PHP domain D0T88_RS03735 PF14579 Helix-hairpin-helix motif D0T88_RS03735 PF07733 Bacterial DNA polymerase III alpha NTPase domain D0T88_RS03740 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D0T88_RS03745 PF01276 Orn/Lys/Arg decarboxylase, major domain D0T88_RS03745 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain D0T88_RS03745 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain D0T88_RS03750 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D0T88_RS03755 PF11734 TilS substrate C-terminal domain D0T88_RS03755 PF01171 PP-loop family D0T88_RS03755 PF09179 TilS substrate binding domain D0T88_RS03760 PF07073 Modulator of Rho-dependent transcription termination (ROF) D0T88_RS03765 PF06786 Uncharacterised protein family (UPF0253) D0T88_RS03770 PF07152 YaeQ protein D0T88_RS03775 PF00472 RF-1 domain D0T88_RS03780 PF04170 NlpE N-terminal domain D0T88_RS03780 PF17185 NlpE C-terminal OB domain D0T88_RS03785 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS03785 PF01548 Transposase D0T88_RS03790 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family D0T88_RS03795 PF03129 Anticodon binding domain D0T88_RS03795 PF04073 Aminoacyl-tRNA editing domain D0T88_RS03795 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D0T88_RS03800 PF18389 TrmO C-terminal domain D0T88_RS03800 PF01980 tRNA-methyltransferase O D0T88_RS03805 PF16358 RcsF lipoprotein D0T88_RS03810 PF03180 NLPA lipoprotein D0T88_RS03815 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS03820 PF00005 ABC transporter D0T88_RS03820 PF09383 NIL domain D0T88_RS03860 PF00248 Aldo/keto reductase family D0T88_RS03865 PF03466 LysR substrate binding domain D0T88_RS03865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS03870 PF03372 Endonuclease/Exonuclease/phosphatase family D0T88_RS03875 PF08241 Methyltransferase domain D0T88_RS03880 PF01476 LysM domain D0T88_RS03880 PF01464 Transglycosylase SLT domain D0T88_RS03885 PF16123 Hydroxyacylglutathione hydrolase C-terminus D0T88_RS03885 PF00753 Metallo-beta-lactamase superfamily D0T88_RS03890 PF08241 Methyltransferase domain D0T88_RS03895 PF00075 RNase H D0T88_RS03900 PF00929 Exonuclease D0T88_RS03925 PF05638 Type VI secretion system effector, Hcp D0T88_RS03935 PF06761 Intracellular multiplication and human macrophage-killing D0T88_RS03935 PF14331 ImcF-related N-terminal domain D0T88_RS03935 PF06744 Type VI secretion protein IcmF C-terminal D0T88_RS03950 PF07724 AAA domain (Cdc48 subfamily) D0T88_RS03950 PF10431 C-terminal, D2-small domain, of ClpB protein D0T88_RS03950 PF00004 ATPase family associated with various cellular activities (AAA) D0T88_RS03950 PF17871 AAA lid domain D0T88_RS03960 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE D0T88_RS03980 PF05947 Type VI secretion system, TssF D0T88_RS03990 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath D0T88_RS04005 PF05638 Type VI secretion system effector, Hcp D0T88_RS04010 PF04717 Type VI secretion system, phage-baseplate injector D0T88_RS04015 PF05593 RHS Repeat D0T88_RS04015 PF03527 RHS protein D0T88_RS04015 PF14220 Domain of unknown function (DUF4329) D0T88_RS04040 PF00795 Carbon-nitrogen hydrolase D0T88_RS04050 PF09317 Domain of unknown function (DUF1974) D0T88_RS04050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D0T88_RS04050 PF02770 Acyl-CoA dehydrogenase, middle domain D0T88_RS04050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D0T88_RS04055 PF13580 SIS domain D0T88_RS04060 PF13230 Glutamine amidotransferases class-II D0T88_RS04065 PF03734 L,D-transpeptidase catalytic domain D0T88_RS04070 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ D0T88_RS04075 PF04221 RelB antitoxin D0T88_RS04080 PF00877 NlpC/P60 family D0T88_RS04095 PF00771 FHIPEP family D0T88_RS04100 PF00691 OmpA family D0T88_RS04100 PF13677 Membrane MotB of proton-channel complex MotA/MotB D0T88_RS04105 PF11798 IMS family HHH motif D0T88_RS04105 PF11799 impB/mucB/samB family C-terminal domain D0T88_RS04105 PF00817 impB/mucB/samB family D0T88_RS04110 PF13673 Acetyltransferase (GNAT) domain D0T88_RS04120 PF00472 RF-1 domain D0T88_RS04125 PF07687 Peptidase dimerisation domain D0T88_RS04125 PF01546 Peptidase family M20/M25/M40 D0T88_RS04130 PF00156 Phosphoribosyl transferase domain D0T88_RS04135 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) D0T88_RS04140 PF07417 Sigma factor-binding transcriptional regulator Crl D0T88_RS04150 PF01472 PUA domain D0T88_RS04150 PF00696 Amino acid kinase family D0T88_RS04155 PF00171 Aldehyde dehydrogenase family D0T88_RS04165 PF03466 LysR substrate binding domain D0T88_RS04170 PF02625 XdhC and CoxI family D0T88_RS04170 PF13478 XdhC Rossmann domain D0T88_RS04175 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D0T88_RS04175 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D0T88_RS04180 PF00941 FAD binding domain in molybdopterin dehydrogenase D0T88_RS04180 PF03450 CO dehydrogenase flavoprotein C-terminal domain D0T88_RS04185 PF00111 2Fe-2S iron-sulfur cluster binding domain D0T88_RS04185 PF01799 [2Fe-2S] binding domain D0T88_RS04190 PF07274 Protein of unknown function (DUF1440) D0T88_RS04195 PF03692 Putative zinc- or iron-chelating domain D0T88_RS04210 PF15976 CS1-pili formation C-terminal D0T88_RS04210 PF16967 E-set like domain D0T88_RS04215 PF18649 EcpB C-terminal domain D0T88_RS04220 PF16449 Fimbrillin MatB D0T88_RS04225 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS04235 PF00444 Ribosomal protein L36 D0T88_RS04240 PF01197 Ribosomal protein L31 D0T88_RS04250 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS04250 PF01548 Transposase D0T88_RS04255 PF11924 Inverse autotransporter, beta-domain D0T88_RS04260 PF12833 Helix-turn-helix domain D0T88_RS04265 PF00248 Aldo/keto reductase family D0T88_RS04270 PF04224 Protein of unknown function, DUF417 D0T88_RS04275 PF07338 Protein of unknown function (DUF1471) D0T88_RS04280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D0T88_RS04280 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS04285 PF12833 Helix-turn-helix domain D0T88_RS04285 PF12852 Cupin D0T88_RS04290 PF02754 Cysteine-rich domain D0T88_RS04295 PF13183 4Fe-4S dicluster domain D0T88_RS04295 PF11870 Domain of unknown function (DUF3390) D0T88_RS04295 PF02589 LUD domain D0T88_RS04300 PF02589 LUD domain D0T88_RS04310 PF05199 GMC oxidoreductase D0T88_RS04310 PF00732 GMC oxidoreductase D0T88_RS04315 PF00171 Aldehyde dehydrogenase family D0T88_RS04320 PF13977 BetI-type transcriptional repressor, C-terminal D0T88_RS04320 PF00440 Bacterial regulatory proteins, tetR family D0T88_RS04325 PF02028 BCCT, betaine/carnitine/choline family transporter D0T88_RS04335 PF00563 EAL domain D0T88_RS04335 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS04340 PF03466 LysR substrate binding domain D0T88_RS04340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS04345 PF06496 Protein of unknown function (DUF1097) D0T88_RS04350 PF12796 Ankyrin repeats (3 copies) D0T88_RS04355 PF11392 Protein of unknown function (DUF2877) D0T88_RS04360 PF02629 CoA binding domain D0T88_RS04360 PF00549 CoA-ligase D0T88_RS04365 PF06545 Protein of unknown function (DUF1116) D0T88_RS04370 PF00696 Amino acid kinase family D0T88_RS04375 PF07969 Amidohydrolase family D0T88_RS04385 PF13407 Periplasmic binding protein domain D0T88_RS04390 PF00005 ABC transporter D0T88_RS04395 PF02653 Branched-chain amino acid transport system / permease component D0T88_RS04400 PF02653 Branched-chain amino acid transport system / permease component D0T88_RS04405 PF08240 Alcohol dehydrogenase GroES-like domain D0T88_RS04405 PF00107 Zinc-binding dehydrogenase D0T88_RS04420 PF01810 LysE type translocator D0T88_RS04425 PF07338 Protein of unknown function (DUF1471) D0T88_RS04430 PF00158 Sigma-54 interaction domain D0T88_RS04430 PF06506 Propionate catabolism activator D0T88_RS04430 PF02954 Bacterial regulatory protein, Fis family D0T88_RS04440 PF00285 Citrate synthase, C-terminal domain D0T88_RS04445 PF03972 MmgE/PrpD family D0T88_RS04450 PF13193 AMP-binding enzyme C-terminal domain D0T88_RS04450 PF16177 Acetyl-coenzyme A synthetase N-terminus D0T88_RS04450 PF00501 AMP-binding enzyme D0T88_RS04455 PF01548 Transposase D0T88_RS04455 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS04460 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin D0T88_RS04465 PF07969 Amidohydrolase family D0T88_RS04470 PF03466 LysR substrate binding domain D0T88_RS04470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS04475 PF00484 Carbonic anhydrase D0T88_RS04480 PF02560 Cyanate lyase C-terminal domain D0T88_RS04485 PF07690 Major Facilitator Superfamily D0T88_RS04490 PF12464 Maltose acetyltransferase D0T88_RS04490 PF00132 Bacterial transferase hexapeptide (six repeats) D0T88_RS04495 PF01306 LacY proton/sugar symporter D0T88_RS04500 PF02836 Glycosyl hydrolases family 2, TIM barrel domain D0T88_RS04500 PF00703 Glycosyl hydrolases family 2 D0T88_RS04500 PF02837 Glycosyl hydrolases family 2, sugar binding domain D0T88_RS04500 PF16353 Domain of unknown function(DUF4981) D0T88_RS04500 PF02929 Beta galactosidase small chain D0T88_RS04505 PF00356 Bacterial regulatory proteins, lacI family D0T88_RS04510 PF09339 IclR helix-turn-helix domain D0T88_RS04510 PF01614 Bacterial transcriptional regulator D0T88_RS04515 PF01494 FAD binding domain D0T88_RS04520 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase D0T88_RS04525 PF12697 Alpha/beta hydrolase family D0T88_RS04530 PF01557 Fumarylacetoacetate (FAA) hydrolase family D0T88_RS04535 PF01118 Semialdehyde dehydrogenase, NAD binding domain D0T88_RS04535 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation D0T88_RS04540 PF07836 DmpG-like communication domain D0T88_RS04540 PF00682 HMGL-like D0T88_RS04545 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS04545 PF01548 Transposase D0T88_RS04550 PF07690 Major Facilitator Superfamily D0T88_RS04555 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) D0T88_RS04560 PF00756 Putative esterase D0T88_RS04565 PF00107 Zinc-binding dehydrogenase D0T88_RS04565 PF08240 Alcohol dehydrogenase GroES-like domain D0T88_RS04570 PF02583 Metal-sensitive transcriptional repressor D0T88_RS04580 PF00132 Bacterial transferase hexapeptide (six repeats) D0T88_RS04585 PF00535 Glycosyl transferase family 2 D0T88_RS04590 PF02585 GlcNAc-PI de-N-acetylase D0T88_RS04595 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D0T88_RS04600 PF00005 ABC transporter D0T88_RS04605 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS04610 PF02668 Taurine catabolism dioxygenase TauD, TfdA family D0T88_RS04615 PF00490 Delta-aminolevulinic acid dehydratase D0T88_RS04620 PF03797 Autotransporter beta-domain D0T88_RS04620 PF03212 Pertactin D0T88_RS04625 PF15977 Winged helix-turn-helix DNA binding D0T88_RS04630 PF00144 Beta-lactamase D0T88_RS04635 PF05992 SbmA/BacA-like family D0T88_RS04640 PF07759 Protein of unknown function (DUF1615) D0T88_RS04645 PF10954 Protein of unknown function (DUF2755) D0T88_RS04650 PF10953 Protein of unknown function (DUF2754) D0T88_RS04655 PF07478 D-ala D-ala ligase C-terminus D0T88_RS04655 PF01820 D-ala D-ala ligase N-terminus D0T88_RS04665 PF10796 Sigma-S stabilisation anti-adaptor protein D0T88_RS04670 PF00245 Alkaline phosphatase D0T88_RS04675 PF07769 psiF repeat D0T88_RS04680 PF05230 MASE2 domain D0T88_RS04680 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS04685 PF03807 NADP oxidoreductase coenzyme F420-dependent D0T88_RS04685 PF14748 Pyrroline-5-carboxylate reductase dimerisation D0T88_RS04690 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 D0T88_RS04695 PF01202 Shikimate kinase D0T88_RS04700 PF16362 YaiA protein D0T88_RS04705 PF07302 AroM protein D0T88_RS04710 PF06865 Pyrimidine/purine nucleoside phosphorylase D0T88_RS04725 PF04381 Putative exonuclease, RdgC D0T88_RS04730 PF00480 ROK family D0T88_RS04735 PF07690 Major Facilitator Superfamily D0T88_RS04740 PF13476 AAA domain D0T88_RS04745 PF00149 Calcineurin-like phosphoesterase D0T88_RS04745 PF12320 Type 5 capsule protein repressor C-terminal domain D0T88_RS04750 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS04750 PF00072 Response regulator receiver domain D0T88_RS04755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS04755 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS04755 PF00989 PAS fold D0T88_RS04755 PF11808 Phosphate regulon sensor protein PhoR D0T88_RS04760 PF05525 Branched-chain amino acid transport protein D0T88_RS04765 PF00324 Amino acid permease D0T88_RS04770 PF00128 Alpha amylase, catalytic domain D0T88_RS04770 PF02903 Alpha amylase, N-terminal ig-like domain D0T88_RS04775 PF04336 Acyl carrier protein phosphodiesterase D0T88_RS04780 PF02547 Queuosine biosynthesis protein D0T88_RS04785 PF01702 Queuine tRNA-ribosyltransferase D0T88_RS04790 PF02699 Preprotein translocase subunit D0T88_RS04795 PF13721 SecD export protein N-terminal TM region D0T88_RS04795 PF07549 SecD/SecF GG Motif D0T88_RS04795 PF02355 Protein export membrane protein D0T88_RS04800 PF02355 Protein export membrane protein D0T88_RS04800 PF07549 SecD/SecF GG Motif D0T88_RS04805 PF01844 HNH endonuclease D0T88_RS04810 PF03502 Nucleoside-specific channel-forming protein, Tsx D0T88_RS04815 PF11622 Protein of unknown function (DUF3251) D0T88_RS04820 PF03477 ATP cone domain D0T88_RS04825 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D0T88_RS04825 PF01872 RibD C-terminal domain D0T88_RS04830 PF00885 6,7-dimethyl-8-ribityllumazine synthase D0T88_RS04835 PF01029 NusB family D0T88_RS04840 PF00586 AIR synthase related protein, N-terminal domain D0T88_RS04840 PF02769 AIR synthase related protein, C-terminal domain D0T88_RS04845 PF04608 Phosphatidylglycerophosphatase A D0T88_RS04850 PF00248 Aldo/keto reductase family D0T88_RS04855 PF02780 Transketolase, C-terminal domain D0T88_RS04855 PF02779 Transketolase, pyrimidine binding domain D0T88_RS04855 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D0T88_RS04860 PF00348 Polyprenyl synthetase D0T88_RS04865 PF02609 Exonuclease VII small subunit D0T88_RS04870 PF02568 Thiamine biosynthesis protein (ThiI) D0T88_RS04870 PF02926 THUMP domain D0T88_RS04875 PF01965 DJ-1/PfpI family D0T88_RS04880 PF08546 Ketopantoate reductase PanE/ApbA C terminal D0T88_RS04880 PF02558 Ketopantoate reductase PanE/ApbA D0T88_RS04885 PF04461 Protein of unknown function (DUF520) D0T88_RS04890 PF07690 Major Facilitator Superfamily D0T88_RS04900 PF05717 IS66 Orf2 like protein D0T88_RS04905 PF03050 Transposase IS66 family D0T88_RS04905 PF13817 IS66 C-terminal element D0T88_RS04905 PF13007 Transposase C of IS166 homeodomain D0T88_RS04905 PF13005 zinc-finger binding domain of transposase IS66 D0T88_RS04925 PF01040 UbiA prenyltransferase family D0T88_RS04930 PF03626 Prokaryotic Cytochrome C oxidase subunit IV D0T88_RS04935 PF00510 Cytochrome c oxidase subunit III D0T88_RS04940 PF00115 Cytochrome C and Quinol oxidase polypeptide I D0T88_RS04945 PF06481 COX Aromatic Rich Motif D0T88_RS04945 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D0T88_RS04950 PF07690 Major Facilitator Superfamily D0T88_RS04955 PF08139 Prokaryotic membrane lipoprotein lipid attachment site D0T88_RS04955 PF03923 Uncharacterized lipoprotein D0T88_RS04960 PF01722 BolA-like protein D0T88_RS04965 PF05697 Bacterial trigger factor protein (TF) D0T88_RS04965 PF05698 Bacterial trigger factor protein (TF) C-terminus D0T88_RS04965 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D0T88_RS04970 PF00574 Clp protease D0T88_RS04975 PF10431 C-terminal, D2-small domain, of ClpB protein D0T88_RS04975 PF07724 AAA domain (Cdc48 subfamily) D0T88_RS04975 PF06689 ClpX C4-type zinc finger D0T88_RS04980 PF02190 ATP-dependent protease La (LON) substrate-binding domain D0T88_RS04980 PF05362 Lon protease (S16) C-terminal proteolytic domain D0T88_RS04980 PF00004 ATPase family associated with various cellular activities (AAA) D0T88_RS04985 PF00216 Bacterial DNA-binding protein D0T88_RS04990 PF13145 PPIC-type PPIASE domain D0T88_RS05005 PF06508 Queuosine biosynthesis protein QueC D0T88_RS05010 PF12793 Sugar transport-related sRNA regulator N-term D0T88_RS05010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0T88_RS05020 PF01037 Lrp/AsnC ligand binding domain D0T88_RS05020 PF13404 AsnC-type helix-turn-helix domain D0T88_RS05025 PF00005 ABC transporter D0T88_RS05025 PF00664 ABC transporter transmembrane region D0T88_RS05030 PF00005 ABC transporter D0T88_RS05030 PF00664 ABC transporter transmembrane region D0T88_RS05035 PF00543 Nitrogen regulatory protein P-II D0T88_RS05040 PF00909 Ammonium Transporter Family D0T88_RS05050 PF09619 Type III secretion system lipoprotein chaperone (YscW) D0T88_RS05055 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D0T88_RS05065 PF07237 Protein of unknown function (DUF1428) D0T88_RS05070 PF12792 CSS motif domain associated with EAL D0T88_RS05070 PF00563 EAL domain D0T88_RS05075 PF10777 Inner membrane protein YlaC D0T88_RS05080 PF14602 Hexapeptide repeat of succinyl-transferase D0T88_RS05080 PF12464 Maltose acetyltransferase D0T88_RS05085 PF05321 Haemolysin expression modulating protein D0T88_RS05090 PF10757 Biofilm formation regulator YbaJ D0T88_RS05095 PF00873 AcrB/AcrD/AcrF family D0T88_RS05100 PF00529 HlyD membrane-fusion protein of T1SS D0T88_RS05100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0T88_RS05105 PF00440 Bacterial regulatory proteins, tetR family D0T88_RS05105 PF08361 MAATS-type transcriptional repressor, C-terminal region D0T88_RS05110 PF12794 Mechanosensitive ion channel inner membrane domain 1 D0T88_RS05110 PF00924 Mechanosensitive ion channel D0T88_RS05110 PF12795 Mechanosensitive ion channel porin domain D0T88_RS05115 PF10689 Protein of unknown function (DUF2496) D0T88_RS05120 PF07445 Primosomal replication protein priC D0T88_RS05125 PF04304 Protein of unknown function (DUF454) D0T88_RS05130 PF00156 Phosphoribosyl transferase domain D0T88_RS05135 PF12170 DNA polymerase III tau subunit V interacting with alpha D0T88_RS05135 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding D0T88_RS05135 PF12169 DNA polymerase III subunits gamma and tau domain III D0T88_RS05140 PF02575 YbaB/EbfC DNA-binding family D0T88_RS05145 PF13662 Toprim domain D0T88_RS05145 PF02132 RecR protein D0T88_RS05150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS05150 PF00183 Hsp90 protein D0T88_RS05155 PF05191 Adenylate kinase, active site lid D0T88_RS05160 PF00762 Ferrochelatase D0T88_RS05165 PF07859 alpha/beta hydrolase fold D0T88_RS05170 PF00294 pfkB family carbohydrate kinase D0T88_RS05175 PF02254 TrkA-N domain D0T88_RS05175 PF00999 Sodium/hydrogen exchanger family D0T88_RS05180 PF07690 Major Facilitator Superfamily D0T88_RS05185 PF02872 5'-nucleotidase, C-terminal domain D0T88_RS05185 PF00149 Calcineurin-like phosphoesterase D0T88_RS05190 PF04073 Aminoacyl-tRNA editing domain D0T88_RS05195 PF01963 TraB family D0T88_RS05200 PF01381 Helix-turn-helix D0T88_RS05205 PF00403 Heavy-metal-associated domain D0T88_RS05210 PF04960 Glutaminase D0T88_RS05215 PF13520 Amino acid permease D0T88_RS05220 PF13411 MerR HTH family regulatory protein D0T88_RS05225 PF01957 NfeD-like C-terminal, partner-binding D0T88_RS05230 PF01145 SPFH domain / Band 7 family D0T88_RS05230 PF16200 C-terminal region of band_7 D0T88_RS05235 PF00005 ABC transporter D0T88_RS05240 PF03649 Uncharacterised protein family (UPF0014) D0T88_RS05245 PF00085 Thioredoxin D0T88_RS05250 PF00106 short chain dehydrogenase D0T88_RS05255 PF13472 GDSL-like Lipase/Acylhydrolase family D0T88_RS05260 PF00005 ABC transporter D0T88_RS05270 PF05593 RHS Repeat D0T88_RS05270 PF03527 RHS protein D0T88_RS05270 PF14220 Domain of unknown function (DUF4329) D0T88_RS05275 PF03527 RHS protein D0T88_RS05295 PF03466 LysR substrate binding domain D0T88_RS05295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS05300 PF04115 Ureidoglycolate lyase D0T88_RS05305 PF01614 Bacterial transcriptional regulator D0T88_RS05305 PF09339 IclR helix-turn-helix domain D0T88_RS05310 PF00205 Thiamine pyrophosphate enzyme, central domain D0T88_RS05310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D0T88_RS05310 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D0T88_RS05315 PF01261 Xylose isomerase-like TIM barrel D0T88_RS05320 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D0T88_RS05320 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D0T88_RS05325 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin D0T88_RS05330 PF01979 Amidohydrolase family D0T88_RS05335 PF00860 Permease family D0T88_RS05340 PF02595 Glycerate kinase family D0T88_RS05345 PF05899 Protein of unknown function (DUF861) D0T88_RS05345 PF07883 Cupin domain D0T88_RS05350 PF01546 Peptidase family M20/M25/M40 D0T88_RS05355 PF02615 Malate/L-lactate dehydrogenase D0T88_RS05360 PF00549 CoA-ligase D0T88_RS05360 PF02629 CoA binding domain D0T88_RS05365 PF06545 Protein of unknown function (DUF1116) D0T88_RS05370 PF11392 Protein of unknown function (DUF2877) D0T88_RS05375 PF00696 Amino acid kinase family D0T88_RS05380 PF02222 ATP-grasp domain D0T88_RS05380 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D0T88_RS05385 PF00731 AIR carboxylase D0T88_RS05390 PF12850 Calcineurin-like phosphoesterase superfamily domain D0T88_RS05395 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D0T88_RS05400 PF01406 tRNA synthetases class I (C) catalytic domain D0T88_RS05400 PF09190 DALR domain D0T88_RS05405 PF04307 LexA-binding, inner membrane-associated putative hydrolase D0T88_RS05415 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D0T88_RS05415 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D0T88_RS05420 PF00419 Fimbrial protein D0T88_RS05425 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D0T88_RS05425 PF02753 Pili assembly chaperone PapD, C-terminal domain D0T88_RS05435 PF00419 Fimbrial protein D0T88_RS05440 PF00419 Fimbrial protein D0T88_RS05445 PF00072 Response regulator receiver domain D0T88_RS05445 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS05455 PF00589 Phage integrase family D0T88_RS05510 PF03793 PASTA domain D0T88_RS05510 PF00069 Protein kinase domain D0T88_RS05515 PF00717 Peptidase S24-like D0T88_RS05515 PF01381 Helix-turn-helix D0T88_RS05535 PF06992 Replication protein P D0T88_RS05545 PF00893 Small Multidrug Resistance protein D0T88_RS05555 PF00239 Resolvase, N terminal domain D0T88_RS05555 PF13408 Recombinase zinc beta ribbon domain D0T88_RS05555 PF07508 Recombinase D0T88_RS05560 PF01161 Phosphatidylethanolamine-binding protein D0T88_RS05565 PF12833 Helix-turn-helix domain D0T88_RS05585 PF07102 Protein of unknown function (DUF1364) D0T88_RS05590 PF05866 Endodeoxyribonuclease RusA D0T88_RS05600 PF06530 Phage antitermination protein Q D0T88_RS05605 PF00267 Gram-negative porin D0T88_RS05610 PF04971 Bacteriophage P21 holin S D0T88_RS05615 PF00959 Phage lysozyme D0T88_RS05620 PF06085 Lipoprotein Rz1 precursor D0T88_RS05625 PF06291 Bor protein D0T88_RS05630 PF13132 Domain of unknown function (DUF3950) D0T88_RS05635 PF07471 Phage DNA packaging protein Nu1 D0T88_RS05640 PF02413 Caudovirales tail fibre assembly protein, lambda gpK D0T88_RS05645 PF02831 gpW D0T88_RS05655 PF01957 NfeD-like C-terminal, partner-binding D0T88_RS05655 PF01972 Serine dehydrogenase proteinase D0T88_RS05665 PF03864 Phage major capsid protein E D0T88_RS05705 PF06791 Prophage tail length tape measure protein D0T88_RS05735 PF06316 Enterobacterial Ail/Lom protein D0T88_RS05740 PF03335 Phage tail fibre repeat D0T88_RS05740 PF07484 Phage Tail Collar Domain D0T88_RS05745 PF13005 zinc-finger binding domain of transposase IS66 D0T88_RS05745 PF13007 Transposase C of IS166 homeodomain D0T88_RS05745 PF03050 Transposase IS66 family D0T88_RS05745 PF13817 IS66 C-terminal element D0T88_RS05750 PF05717 IS66 Orf2 like protein D0T88_RS05760 PF02413 Caudovirales tail fibre assembly protein, lambda gpK D0T88_RS05765 PF00239 Resolvase, N terminal domain D0T88_RS05765 PF02796 Helix-turn-helix domain of resolvase D0T88_RS05780 PF08242 Methyltransferase domain D0T88_RS05790 PF12833 Helix-turn-helix domain D0T88_RS05795 PF01278 Omptin family D0T88_RS05800 PF12833 Helix-turn-helix domain D0T88_RS05805 PF14488 Domain of unknown function (DUF4434) D0T88_RS05810 PF13283 Bacteriophage N adsorption protein A C-term D0T88_RS05815 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D0T88_RS05815 PF13632 Glycosyl transferase family group 2 D0T88_RS05820 PF13808 DDE_Tnp_1-associated D0T88_RS05820 PF01609 Transposase DDE domain D0T88_RS05850 PF05488 PAAR motif D0T88_RS05850 PF05593 RHS Repeat D0T88_RS05855 PF05593 RHS Repeat D0T88_RS05855 PF05488 PAAR motif D0T88_RS05865 PF04717 Type VI secretion system, phage-baseplate injector D0T88_RS05870 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS05870 PF00672 HAMP domain D0T88_RS05870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS05875 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS05875 PF00072 Response regulator receiver domain D0T88_RS05880 PF02321 Outer membrane efflux protein D0T88_RS05885 PF11604 Copper binding periplasmic protein CusF D0T88_RS05890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0T88_RS05890 PF00529 HlyD membrane-fusion protein of T1SS D0T88_RS05895 PF00873 AcrB/AcrD/AcrF family D0T88_RS05900 PF00324 Amino acid permease D0T88_RS05905 PF00924 Mechanosensitive ion channel D0T88_RS05910 PF00881 Nitroreductase family D0T88_RS05915 PF04237 YjbR D0T88_RS05920 PF06643 Protein of unknown function (DUF1158) D0T88_RS05925 PF04107 Glutamate-cysteine ligase family 2(GCS2) D0T88_RS05930 PF01848 Hok/gef family D0T88_RS05935 PF01848 Hok/gef family D0T88_RS05940 PF17837 4'-phosphopantetheinyl transferase N-terminal domain D0T88_RS05940 PF01648 4'-phosphopantetheinyl transferase superfamily D0T88_RS05945 PF07715 TonB-dependent Receptor Plug Domain D0T88_RS05945 PF00593 TonB dependent receptor D0T88_RS05950 PF11806 Domain of unknown function (DUF3327) D0T88_RS05950 PF00756 Putative esterase D0T88_RS05955 PF03621 MbtH-like protein D0T88_RS05960 PF00975 Thioesterase domain D0T88_RS05960 PF00550 Phosphopantetheine attachment site D0T88_RS05960 PF00668 Condensation domain D0T88_RS05960 PF00501 AMP-binding enzyme D0T88_RS05965 PF02706 Chain length determinant protein D0T88_RS05970 PF00005 ABC transporter D0T88_RS05975 PF01032 FecCD transport family D0T88_RS05980 PF01032 FecCD transport family D0T88_RS05985 PF05977 Transmembrane secretion effector D0T88_RS05990 PF01497 Periplasmic binding protein D0T88_RS05995 PF00425 chorismate binding enzyme D0T88_RS06000 PF00501 AMP-binding enzyme D0T88_RS06000 PF13193 AMP-binding enzyme C-terminal domain D0T88_RS06005 PF00857 Isochorismatase family D0T88_RS06005 PF00550 Phosphopantetheine attachment site D0T88_RS06015 PF03061 Thioesterase superfamily D0T88_RS06020 PF02554 Carbon starvation protein CstA D0T88_RS06020 PF13722 5TM C-terminal transporter carbon starvation CstA D0T88_RS06025 PF04328 Selenoprotein, putative D0T88_RS06030 PF00465 Iron-containing alcohol dehydrogenase D0T88_RS06035 PF00155 Aminotransferase class I and II D0T88_RS06040 PF02195 ParB-like nuclease domain D0T88_RS06045 PF01507 Phosphoadenosine phosphosulfate reductase family D0T88_RS06045 PF11922 Domain of unknown function (DUF3440) D0T88_RS06050 PF03466 LysR substrate binding domain D0T88_RS06050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS06055 PF13098 Thioredoxin-like domain D0T88_RS06060 PF00578 AhpC/TSA family D0T88_RS06060 PF10417 C-terminal domain of 1-Cys peroxiredoxin D0T88_RS06065 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS06065 PF13192 Thioredoxin domain D0T88_RS06070 PF00582 Universal stress protein family D0T88_RS06075 PF00107 Zinc-binding dehydrogenase D0T88_RS06075 PF08240 Alcohol dehydrogenase GroES-like domain D0T88_RS06075 PF13823 Alcohol dehydrogenase GroES-associated D0T88_RS06080 PF14760 Rnk N-terminus D0T88_RS06080 PF01272 Transcription elongation factor, GreA/GreB, C-term D0T88_RS06085 PF00445 Ribonuclease T2 family D0T88_RS06090 PF00939 Sodium:sulfate symporter transmembrane region D0T88_RS06095 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase D0T88_RS06100 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase D0T88_RS06105 PF04223 Citrate lyase, alpha subunit (CitF) D0T88_RS06110 PF03328 HpcH/HpaI aldolase/citrate lyase family D0T88_RS06115 PF06857 Malonate decarboxylase delta subunit (MdcD) D0T88_RS06120 PF08218 Citrate lyase ligase C-terminal domain D0T88_RS06125 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain D0T88_RS06125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS06125 PF00989 PAS fold D0T88_RS06125 PF17203 Single cache domain 3 D0T88_RS06130 PF12431 Transcriptional regulator D0T88_RS06130 PF00072 Response regulator receiver domain D0T88_RS06135 PF03606 C4-dicarboxylate anaerobic carrier D0T88_RS06140 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP D0T88_RS06145 PF00313 'Cold-shock' DNA-binding domain D0T88_RS06150 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D0T88_RS06155 PF00795 Carbon-nitrogen hydrolase D0T88_RS06160 PF02416 mttA/Hcf106 family D0T88_RS06165 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family D0T88_RS06165 PF04055 Radical SAM superfamily D0T88_RS06170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS06170 PF03466 LysR substrate binding domain D0T88_RS06175 PF03099 Biotin/lipoate A/B protein ligase family D0T88_RS06180 PF04359 Protein of unknown function (DUF493) D0T88_RS06185 PF07943 Penicillin-binding protein 5, C-terminal domain D0T88_RS06185 PF00768 D-alanyl-D-alanine carboxypeptidase D0T88_RS06190 PF03330 Lytic transglycolase D0T88_RS06190 PF05036 Sporulation related domain D0T88_RS06195 PF01098 Cell cycle protein D0T88_RS06200 PF03717 Penicillin-binding Protein dimerisation domain D0T88_RS06200 PF00905 Penicillin binding protein transpeptidase domain D0T88_RS06205 PF02590 Predicted SPOUT methyltransferase D0T88_RS06215 PF00300 Histidine phosphatase superfamily (branch 1) D0T88_RS06220 PF01467 Cytidylyltransferase-like D0T88_RS06225 PF14840 Processivity clamp loader gamma complex DNA pol III C-term D0T88_RS06225 PF06144 DNA polymerase III, delta subunit D0T88_RS06230 PF04390 Lipopolysaccharide-assembly D0T88_RS06235 PF08264 Anticodon-binding domain of tRNA D0T88_RS06235 PF00133 tRNA synthetases class I (I, L, M and V) D0T88_RS06235 PF13603 Leucyl-tRNA synthetase, Domain 2 D0T88_RS06240 PF07295 Zinc-ribbon containing domain D0T88_RS06245 PF08238 Sel1 repeat D0T88_RS06250 PF06889 Protein of unknown function (DUF1266) D0T88_RS06260 PF08238 Sel1 repeat D0T88_RS06265 PF06889 Protein of unknown function (DUF1266) D0T88_RS06275 PF00012 Hsp70 protein D0T88_RS06280 PF01156 Inosine-uridine preferring nucleoside hydrolase D0T88_RS06285 PF00005 ABC transporter D0T88_RS06290 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS06295 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS06300 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0T88_RS06310 PF00795 Carbon-nitrogen hydrolase D0T88_RS06315 PF00571 CBS domain D0T88_RS06315 PF03471 Transporter associated domain D0T88_RS06320 PF02130 Uncharacterized protein family UPF0054 D0T88_RS06325 PF02562 PhoH-like protein D0T88_RS06330 PF04055 Radical SAM superfamily D0T88_RS06330 PF01938 TRAM domain D0T88_RS06330 PF00919 Uncharacterized protein family UPF0004 D0T88_RS06335 PF01494 FAD binding domain D0T88_RS06375 PF00733 Asparagine synthase D0T88_RS06375 PF13537 Glutamine amidotransferase domain D0T88_RS06380 PF13344 Haloacid dehalogenase-like hydrolase D0T88_RS06385 PF00480 ROK family D0T88_RS06385 PF01047 MarR family D0T88_RS06390 PF01979 Amidohydrolase family D0T88_RS06395 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D0T88_RS06400 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D0T88_RS06400 PF00367 phosphotransferase system, EIIB D0T88_RS06400 PF02378 Phosphotransferase system, EIIC D0T88_RS06405 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain D0T88_RS06405 PF00749 tRNA synthetases class I (E and Q), catalytic domain D0T88_RS06410 PF03573 outer membrane porin, OprD family D0T88_RS06415 PF13982 YbfN-like lipoprotein D0T88_RS06420 PF01475 Ferric uptake regulator family D0T88_RS06430 PF00258 Flavodoxin D0T88_RS06435 PF01402 Ribbon-helix-helix protein, copG family D0T88_RS06440 PF12697 Alpha/beta hydrolase family D0T88_RS06445 PF17206 SeqA protein N-terminal domain D0T88_RS06445 PF03925 SeqA protein C-terminal domain D0T88_RS06450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D0T88_RS06450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D0T88_RS06450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D0T88_RS06450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D0T88_RS06455 PF13520 Amino acid permease D0T88_RS06460 PF01276 Orn/Lys/Arg decarboxylase, major domain D0T88_RS06460 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain D0T88_RS06460 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain D0T88_RS06470 PF00072 Response regulator receiver domain D0T88_RS06470 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS06475 PF13493 Domain of unknown function (DUF4118) D0T88_RS06475 PF13492 GAF domain D0T88_RS06475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS06475 PF02702 Osmosensitive K+ channel His kinase sensor domain D0T88_RS06475 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS06480 PF02669 K+-transporting ATPase, c chain D0T88_RS06490 PF03814 Potassium-transporting ATPase A subunit D0T88_RS06495 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) D0T88_RS06500 PF10725 Protein of unknown function (DUF2517) D0T88_RS06535 PF08349 Protein of unknown function (DUF1722) D0T88_RS06540 PF00875 DNA photolyase D0T88_RS06540 PF03441 FAD binding domain of DNA photolyase D0T88_RS06545 PF00854 POT family D0T88_RS06550 PF01784 NIF3 (NGG1p interacting factor 3) D0T88_RS06555 PF02682 Carboxyltransferase domain, subdomain C and D D0T88_RS06560 PF02626 Carboxyltransferase domain, subdomain A and B D0T88_RS06565 PF03746 LamB/YcsF family D0T88_RS06570 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D0T88_RS06570 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D0T88_RS06570 PF06827 Zinc finger found in FPG and IleRS D0T88_RS06575 PF05145 Transition state regulatory protein AbrB D0T88_RS06580 PF00419 Fimbrial protein D0T88_RS06585 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D0T88_RS06585 PF02753 Pili assembly chaperone PapD, C-terminal domain D0T88_RS06590 PF00577 Outer membrane usher protein D0T88_RS06590 PF13954 PapC N-terminal domain D0T88_RS06590 PF13953 PapC C-terminal domain D0T88_RS06595 PF00419 Fimbrial protein D0T88_RS06600 PF00285 Citrate synthase, C-terminal domain D0T88_RS06610 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D0T88_RS06615 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D0T88_RS06620 PF02910 Fumarate reductase flavoprotein C-term D0T88_RS06620 PF00890 FAD binding domain D0T88_RS06625 PF13085 2Fe-2S iron-sulfur cluster binding domain D0T88_RS06630 PF16078 2-oxoglutarate dehydrogenase N-terminus D0T88_RS06630 PF02779 Transketolase, pyrimidine binding domain D0T88_RS06630 PF16870 2-oxoglutarate dehydrogenase C-terminal D0T88_RS06630 PF00676 Dehydrogenase E1 component D0T88_RS06635 PF00364 Biotin-requiring enzyme D0T88_RS06635 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D0T88_RS06635 PF02817 e3 binding domain D0T88_RS06640 PF00549 CoA-ligase D0T88_RS06640 PF08442 ATP-grasp domain D0T88_RS06645 PF02629 CoA binding domain D0T88_RS06645 PF00549 CoA-ligase D0T88_RS06650 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS06650 PF07702 UTRA domain D0T88_RS06655 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0T88_RS06655 PF02378 Phosphotransferase system, EIIC D0T88_RS06655 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0T88_RS06660 PF09261 Alpha mannosidase middle domain D0T88_RS06660 PF07748 Glycosyl hydrolases family 38 C-terminal domain D0T88_RS06660 PF01074 Glycosyl hydrolases family 38 N-terminal domain D0T88_RS06665 PF01654 Cytochrome bd terminal oxidase subunit I D0T88_RS06670 PF02322 Cytochrome bd terminal oxidase subunit II D0T88_RS06675 PF08173 Membrane bound YbgT-like protein D0T88_RS06680 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) D0T88_RS06685 PF03061 Thioesterase superfamily D0T88_RS06690 PF01618 MotA/TolQ/ExbB proton channel family D0T88_RS06695 PF02472 Biopolymer transport protein ExbD/TolR D0T88_RS06700 PF06519 TolA C-terminal D0T88_RS06705 PF07676 WD40-like Beta Propeller Repeat D0T88_RS06705 PF04052 TolB amino-terminal domain D0T88_RS06710 PF00691 OmpA family D0T88_RS06715 PF16331 TolA binding protein trimerisation D0T88_RS06715 PF13174 Tetratricopeptide repeat D0T88_RS06760 PF02445 Quinolinate synthetase A protein D0T88_RS06765 PF04973 Nicotinamide mononucleotide transporter D0T88_RS06770 PF01545 Cation efflux family D0T88_RS06775 PF13985 YbgS-like protein D0T88_RS06780 PF00793 DAHP synthetase I family D0T88_RS06785 PF00300 Histidine phosphatase superfamily (branch 1) D0T88_RS06790 PF01263 Aldose 1-epimerase D0T88_RS06795 PF10509 Galactokinase galactose-binding signature D0T88_RS06795 PF00288 GHMP kinases N terminal domain D0T88_RS06795 PF08544 GHMP kinases C terminal D0T88_RS06800 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain D0T88_RS06800 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain D0T88_RS06805 PF16363 GDP-mannose 4,6 dehydratase D0T88_RS06810 PF00005 ABC transporter D0T88_RS06815 PF03459 TOBE domain D0T88_RS06815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS06820 PF10766 Multidrug efflux pump-associated protein AcrZ D0T88_RS06830 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS06835 PF00005 ABC transporter D0T88_RS06835 PF03459 TOBE domain D0T88_RS06845 PF10282 Lactonase, 7-bladed beta-propeller D0T88_RS06850 PF03466 LysR substrate binding domain D0T88_RS06850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS06855 PF04303 PrpF protein D0T88_RS06860 PF00939 Sodium:sulfate symporter transmembrane region D0T88_RS06865 PF00330 Aconitase family (aconitate hydratase) D0T88_RS06865 PF00694 Aconitase C-terminal domain D0T88_RS06870 PF01095 Pectinesterase D0T88_RS06875 PF01161 Phosphatidylethanolamine-binding protein D0T88_RS06880 PF00202 Aminotransferase class-III D0T88_RS06885 PF04055 Radical SAM superfamily D0T88_RS06885 PF06968 Biotin and Thiamin Synthesis associated domain D0T88_RS06890 PF00155 Aminotransferase class I and II D0T88_RS06895 PF08241 Methyltransferase domain D0T88_RS06905 PF02151 UvrB/uvrC motif D0T88_RS06905 PF04851 Type III restriction enzyme, res subunit D0T88_RS06905 PF00271 Helicase conserved C-terminal domain D0T88_RS06905 PF12344 Ultra-violet resistance protein B D0T88_RS06905 PF17757 UvrB interaction domain D0T88_RS06910 PF01933 Uncharacterised protein family UPF0052 D0T88_RS06915 PF04055 Radical SAM superfamily D0T88_RS06915 PF06463 Molybdenum Cofactor Synthesis C D0T88_RS06920 PF00994 Probable molybdopterin binding domain D0T88_RS06925 PF01967 MoaC family D0T88_RS06930 PF02597 ThiS family D0T88_RS06935 PF02391 MoaE protein D0T88_RS06940 PF01027 Inhibitor of apoptosis-promoting Bax1 D0T88_RS06950 PF01027 Inhibitor of apoptosis-promoting Bax1 D0T88_RS06955 PF03706 Lysylphosphatidylglycerol synthase TM region D0T88_RS06960 PF13091 PLD-like domain D0T88_RS06965 PF03372 Endonuclease/Exonuclease/phosphatase family D0T88_RS06970 PF11076 Putative inner membrane protein YbhQ D0T88_RS06985 PF00005 ABC transporter D0T88_RS06990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0T88_RS06995 PF00440 Bacterial regulatory proteins, tetR family D0T88_RS06995 PF09209 Tetracyclin repressor-like, C-terminal domain D0T88_RS07000 PF00270 DEAD/DEAH box helicase D0T88_RS07000 PF00271 Helicase conserved C-terminal domain D0T88_RS07005 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS07005 PF01548 Transposase D0T88_RS07010 PF08719 Domain of unknown function (DUF1768) D0T88_RS07015 PF06733 DEAD_2 D0T88_RS07015 PF00270 DEAD/DEAH box helicase D0T88_RS07015 PF13307 Helicase C-terminal domain D0T88_RS07020 PF02885 Glycosyl transferase family, helical bundle domain D0T88_RS07025 PF02615 Malate/L-lactate dehydrogenase D0T88_RS07030 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS07030 PF01548 Transposase D0T88_RS07035 PF07338 Protein of unknown function (DUF1471) D0T88_RS07040 PF01258 Prokaryotic dksA/traR C4-type zinc finger D0T88_RS07045 PF13640 2OG-Fe(II) oxygenase superfamily D0T88_RS07045 PF18331 PKHD-type hydroxylase C-terminal domain D0T88_RS07050 PF00593 TonB dependent receptor D0T88_RS07050 PF07715 TonB-dependent Receptor Plug Domain D0T88_RS07055 PF07338 Protein of unknown function (DUF1471) D0T88_RS07060 PF05971 RNA methyltransferase D0T88_RS07065 PF00924 Mechanosensitive ion channel D0T88_RS07070 PF00005 ABC transporter D0T88_RS07075 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS07080 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0T88_RS07085 PF00210 Ferritin-like domain D0T88_RS07090 PF00892 EamA-like transporter family D0T88_RS07100 PF13505 Outer membrane protein beta-barrel domain D0T88_RS07105 PF00884 Sulfatase D0T88_RS07115 PF01325 Iron dependent repressor, N-terminal DNA binding domain D0T88_RS07115 PF02742 Iron dependent repressor, metal binding and dimerisation domain D0T88_RS07120 PF03600 Citrate transporter D0T88_RS07125 PF17969 L,D-transpeptidase C-terminal domain D0T88_RS07125 PF03734 L,D-transpeptidase catalytic domain D0T88_RS07130 PF00005 ABC transporter D0T88_RS07130 PF12848 ABC transporter D0T88_RS07135 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS07135 PF01548 Transposase D0T88_RS07140 PF07350 Protein of unknown function (DUF1479) D0T88_RS07150 PF02901 Pyruvate formate lyase-like D0T88_RS07150 PF01228 Glycine radical D0T88_RS07155 PF04055 Radical SAM superfamily D0T88_RS07160 PF00923 Transaldolase/Fructose-6-phosphate aldolase D0T88_RS07165 PF00899 ThiF family D0T88_RS07170 PF03454 MoeA C-terminal region (domain IV) D0T88_RS07170 PF00994 Probable molybdopterin binding domain D0T88_RS07170 PF03453 MoeA N-terminal region (domain I and II) D0T88_RS07175 PF01112 Asparaginase D0T88_RS07180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0T88_RS07180 PF00005 ABC transporter D0T88_RS07185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0T88_RS07190 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS07195 PF12911 N-terminal TM domain of oligopeptide transport permease C D0T88_RS07195 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS07200 PF17153 Periplasmic sensor domain, extracellular D0T88_RS07200 PF00563 EAL domain D0T88_RS07205 PF17156 Gammaproteobacterial periplasmic sensor domain D0T88_RS07205 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS07210 PF00919 Uncharacterized protein family UPF0004 D0T88_RS07210 PF04055 Radical SAM superfamily D0T88_RS07210 PF18693 TRAM domain D0T88_RS07215 PF10799 Biofilm formation protein (YliH/bssR) D0T88_RS07220 PF07995 Glucose / Sorbosone dehydrogenase D0T88_RS07225 PF13417 Glutathione S-transferase, N-terminal domain D0T88_RS07225 PF00043 Glutathione S-transferase, C-terminal domain D0T88_RS07230 PF00768 D-alanyl-D-alanine carboxypeptidase D0T88_RS07230 PF07943 Penicillin-binding protein 5, C-terminal domain D0T88_RS07235 PF00455 DeoR C terminal sensor domain D0T88_RS07235 PF08220 DeoR-like helix-turn-helix domain D0T88_RS07240 PF01569 PAP2 superfamily D0T88_RS07245 PF07690 Major Facilitator Superfamily D0T88_RS07260 PF07690 Major Facilitator Superfamily D0T88_RS07265 PF00440 Bacterial regulatory proteins, tetR family D0T88_RS07270 PF06826 Predicted Permease Membrane Region D0T88_RS07270 PF02080 TrkA-C domain D0T88_RS07275 PF11045 Putative inner membrane protein of Enterobacteriaceae D0T88_RS07280 PF00462 Glutaredoxin D0T88_RS07285 PF07214 Protein of unknown function (DUF1418) D0T88_RS07290 PF00881 Nitroreductase family D0T88_RS07295 PF08443 RimK-like ATP-grasp domain D0T88_RS07295 PF18030 RimK PreATP-grasp domain D0T88_RS07300 PF10722 Putative bacterial sensory transduction regulator D0T88_RS07305 PF13416 Bacterial extracellular solute-binding protein D0T88_RS07310 PF00005 ABC transporter D0T88_RS07310 PF08402 TOBE domain D0T88_RS07315 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS07320 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS07325 PF10767 Protein of unknown function (DUF2593) D0T88_RS07330 PF05958 tRNA (Uracil-5-)-methyltransferase D0T88_RS07335 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0T88_RS07340 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS07345 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS07350 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0T88_RS07355 PF00005 ABC transporter D0T88_RS07360 PF12883 Protein of unknown function (DUF3828) D0T88_RS07365 PF01906 Putative heavy-metal-binding D0T88_RS07370 PF01510 N-acetylmuramoyl-L-alanine amidase D0T88_RS07375 PF01370 NAD dependent epimerase/dehydratase family D0T88_RS07380 PF11066 Protein of unknown function (DUF2867) D0T88_RS07380 PF13460 NAD(P)H-binding D0T88_RS07385 PF01212 Beta-eliminating lyase D0T88_RS07390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D0T88_RS07390 PF00205 Thiamine pyrophosphate enzyme, central domain D0T88_RS07390 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D0T88_RS07395 PF00175 Oxidoreductase NAD-binding domain D0T88_RS07395 PF00111 2Fe-2S iron-sulfur cluster binding domain D0T88_RS07395 PF00970 Oxidoreductase FAD-binding domain D0T88_RS07400 PF03063 Prismane/CO dehydrogenase family D0T88_RS07405 PF03956 Lysine exporter LysO D0T88_RS07410 PF00230 Major intrinsic protein D0T88_RS07415 PF11398 Protein of unknown function (DUF2813) D0T88_RS07420 PF04393 Protein of unknown function (DUF535) D0T88_RS07425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0T88_RS07430 PF12704 MacB-like periplasmic core domain D0T88_RS07430 PF00005 ABC transporter D0T88_RS07430 PF02687 FtsX-like permease family D0T88_RS07435 PF00313 'Cold-shock' DNA-binding domain D0T88_RS07440 PF02617 ATP-dependent Clp protease adaptor protein ClpS D0T88_RS07445 PF10431 C-terminal, D2-small domain, of ClpB protein D0T88_RS07445 PF17871 AAA lid domain D0T88_RS07445 PF00004 ATPase family associated with various cellular activities (AAA) D0T88_RS07445 PF07724 AAA domain (Cdc48 subfamily) D0T88_RS07445 PF02861 Clp amino terminal domain, pathogenicity island component D0T88_RS07455 PF01176 Translation initiation factor 1A / IF-1 D0T88_RS07460 PF03588 Leucyl/phenylalanyl-tRNA protein transferase D0T88_RS07465 PF00664 ABC transporter transmembrane region D0T88_RS07465 PF00005 ABC transporter D0T88_RS07470 PF00005 ABC transporter D0T88_RS07470 PF00664 ABC transporter transmembrane region D0T88_RS07475 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS07480 PF01037 Lrp/AsnC ligand binding domain D0T88_RS07485 PF01580 FtsK/SpoIIIE family D0T88_RS07485 PF17854 FtsK alpha domain D0T88_RS07485 PF09397 Ftsk gamma domain D0T88_RS07485 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D0T88_RS07490 PF03548 Outer membrane lipoprotein carrier protein LolA D0T88_RS07495 PF00004 ATPase family associated with various cellular activities (AAA) D0T88_RS07495 PF16193 AAA C-terminal domain D0T88_RS07495 PF12002 MgsA AAA+ ATPase C terminal D0T88_RS07500 PF02403 Seryl-tRNA synthetase N-terminal domain D0T88_RS07500 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D0T88_RS07505 PF00384 Molybdopterin oxidoreductase D0T88_RS07505 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D0T88_RS07505 PF01568 Molydopterin dinucleotide binding domain D0T88_RS07510 PF12800 4Fe-4S binding domain D0T88_RS07510 PF13247 4Fe-4S dicluster domain D0T88_RS07515 PF04976 DMSO reductase anchor subunit (DmsC) D0T88_RS07520 PF00857 Isochorismatase family D0T88_RS07525 PF07690 Major Facilitator Superfamily D0T88_RS07530 PF13520 Amino acid permease D0T88_RS07535 PF03466 LysR substrate binding domain D0T88_RS07535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS07540 PF02525 Flavodoxin-like fold D0T88_RS07545 PF04055 Radical SAM superfamily D0T88_RS07550 PF02901 Pyruvate formate lyase-like D0T88_RS07550 PF01228 Glycine radical D0T88_RS07555 PF01226 Formate/nitrite transporter D0T88_RS07560 PF18381 YcaO cyclodehydratase C-terminal domain D0T88_RS07560 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding D0T88_RS07565 PF04239 Protein of unknown function (DUF421) D0T88_RS07570 PF00266 Aminotransferase class-V D0T88_RS07575 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D0T88_RS07580 PF01435 Peptidase family M48 D0T88_RS07585 PF02224 Cytidylate kinase D0T88_RS07590 PF00575 S1 RNA binding domain D0T88_RS07595 PF00216 Bacterial DNA-binding protein D0T88_RS07600 PF00753 Metallo-beta-lactamase superfamily D0T88_RS07600 PF03772 Competence protein D0T88_RS07605 PF00005 ABC transporter D0T88_RS07605 PF00664 ABC transporter transmembrane region D0T88_RS07610 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D0T88_RS07615 PF06224 Winged helix DNA-binding domain D0T88_RS07620 PF03966 Trm112p-like protein D0T88_RS07625 PF02348 Cytidylyltransferase D0T88_RS07630 PF01636 Phosphotransferase enzyme family D0T88_RS07635 PF02698 DUF218 domain D0T88_RS07640 PF13847 Methyltransferase domain D0T88_RS07645 PF17192 MukF middle domain D0T88_RS07645 PF03882 MukF winged-helix domain D0T88_RS07645 PF17193 MukF C-terminal domain D0T88_RS07650 PF04288 MukE-like family D0T88_RS07655 PF16330 MukB hinge domain D0T88_RS07655 PF04310 MukB N-terminal D0T88_RS07660 PF01471 Putative peptidoglycan binding domain D0T88_RS07660 PF03734 L,D-transpeptidase catalytic domain D0T88_RS07665 PF05951 Bacterial protein of unknown function (DUF882) D0T88_RS07670 PF00753 Metallo-beta-lactamase superfamily D0T88_RS07675 PF01548 Transposase D0T88_RS07675 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS07680 PF00155 Aminotransferase class I and II D0T88_RS07685 PF00267 Gram-negative porin D0T88_RS07690 PF00152 tRNA synthetases class II (D, K and N) D0T88_RS07690 PF01336 OB-fold nucleic acid binding domain D0T88_RS07695 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family D0T88_RS07695 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain D0T88_RS07700 PF11940 Domain of unknown function (DUF3458) Ig-like fold D0T88_RS07700 PF01433 Peptidase family M1 domain D0T88_RS07700 PF17432 Domain of unknown function (DUF3458_C) ARM repeats D0T88_RS07705 PF00005 ABC transporter D0T88_RS07710 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS07715 PF00296 Luciferase-like monooxygenase D0T88_RS07720 PF09084 NMT1/THI5 like D0T88_RS07725 PF03358 NADPH-dependent FMN reductase D0T88_RS07730 PF00419 Fimbrial protein D0T88_RS07735 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D0T88_RS07735 PF02753 Pili assembly chaperone PapD, C-terminal domain D0T88_RS07740 PF00577 Outer membrane usher protein D0T88_RS07740 PF13953 PapC C-terminal domain D0T88_RS07740 PF13954 PapC N-terminal domain D0T88_RS07745 PF00419 Fimbrial protein D0T88_RS07750 PF00419 Fimbrial protein D0T88_RS07755 PF00419 Fimbrial protein D0T88_RS07760 PF02753 Pili assembly chaperone PapD, C-terminal domain D0T88_RS07760 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D0T88_RS07765 PF01180 Dihydroorotate dehydrogenase D0T88_RS07770 PF07126 Cell-division protein ZapC D0T88_RS07775 PF00111 2Fe-2S iron-sulfur cluster binding domain D0T88_RS07775 PF03476 MOSC N-terminal beta barrel domain D0T88_RS07775 PF03473 MOSC domain D0T88_RS07780 PF10672 S-adenosylmethionine-dependent methyltransferase D0T88_RS07780 PF01170 Putative RNA methylase family UPF0020 D0T88_RS07780 PF02926 THUMP domain D0T88_RS07785 PF00005 ABC transporter D0T88_RS07785 PF12848 ABC transporter D0T88_RS07785 PF16326 ABC transporter C-terminal domain D0T88_RS07790 PF04403 Paraquat-inducible protein A D0T88_RS07795 PF02470 MlaD protein D0T88_RS07800 PF03886 ABC-type transport auxiliary lipoprotein component D0T88_RS07805 PF04957 Ribosome modulation factor D0T88_RS07810 PF07977 FabA-like domain D0T88_RS07815 PF13654 AAA domain D0T88_RS07815 PF05362 Lon protease (S16) C-terminal proteolytic domain D0T88_RS07820 PF17414 MatP C-terminal ribbon-helix-helix domain D0T88_RS07820 PF06303 MatP N-terminal domain D0T88_RS07825 PF01389 OmpA-like transmembrane domain D0T88_RS07825 PF00691 OmpA family D0T88_RS07830 PF03846 Cell division inhibitor SulA D0T88_RS07835 PF04994 TfoX C-terminal domain D0T88_RS07835 PF04993 TfoX N-terminal domain D0T88_RS07840 PF12805 FUSC-like inner membrane protein yccS D0T88_RS07845 PF03733 Inner membrane component domain D0T88_RS07850 PF13361 UvrD-like helicase C-terminal domain D0T88_RS07850 PF00580 UvrD/REP helicase N-terminal domain D0T88_RS07850 PF12462 DNA helicase IV / RNA helicase N terminal D0T88_RS07855 PF02142 MGS-like domain D0T88_RS07860 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) D0T88_RS07865 PF13380 CoA binding domain D0T88_RS07870 PF08755 Hemimethylated DNA-binding protein YccV like D0T88_RS07875 PF17785 PUA-like domain D0T88_RS07875 PF10672 S-adenosylmethionine-dependent methyltransferase D0T88_RS07880 PF00708 Acylphosphatase D0T88_RS07885 PF04358 DsrC like protein D0T88_RS07890 PF01027 Inhibitor of apoptosis-promoting Bax1 D0T88_RS07900 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal D0T88_RS07900 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D0T88_RS07905 PF00374 Nickel-dependent hydrogenase D0T88_RS07910 PF01292 Prokaryotic cytochrome b561 D0T88_RS07915 PF01750 Hydrogenase maturation protease D0T88_RS07920 PF07449 Hydrogenase-1 expression protein HyaE D0T88_RS07925 PF04809 HupH hydrogenase expression protein, C-terminal conserved region D0T88_RS07930 PF01654 Cytochrome bd terminal oxidase subunit I D0T88_RS07935 PF02322 Cytochrome bd terminal oxidase subunit II D0T88_RS07940 PF08173 Membrane bound YbgT-like protein D0T88_RS07945 PF00328 Histidine phosphatase superfamily (branch 2) D0T88_RS07950 PF02706 Chain length determinant protein D0T88_RS07950 PF13807 G-rich domain on putative tyrosine kinase D0T88_RS07950 PF13614 AAA domain D0T88_RS07955 PF01451 Low molecular weight phosphotyrosine protein phosphatase D0T88_RS07960 PF10531 SLBB domain D0T88_RS07960 PF02563 Polysaccharide biosynthesis/export protein D0T88_RS07960 PF18412 Outer-membrane lipoprotein Wza C-terminal domain D0T88_RS07965 PF06082 Exopolysaccharide biosynthesis protein YbjH D0T88_RS07970 PF06251 Capsule biosynthesis GfcC D0T88_RS07975 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF D0T88_RS07985 PF00313 'Cold-shock' DNA-binding domain D0T88_RS07990 PF00313 'Cold-shock' DNA-binding domain D0T88_RS08000 PF15939 Putative antitoxin of bacterial toxin-antitoxin system D0T88_RS08005 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system D0T88_RS08010 PF12801 4Fe-4S binding domain D0T88_RS08015 PF01627 Hpt domain D0T88_RS08015 PF00672 HAMP domain D0T88_RS08015 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS08015 PF00072 Response regulator receiver domain D0T88_RS08015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS08020 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D0T88_RS08025 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS08025 PF00072 Response regulator receiver domain D0T88_RS08030 PF03264 NapC/NirT cytochrome c family, N-terminal region D0T88_RS08035 PF00384 Molybdopterin oxidoreductase D0T88_RS08035 PF18364 Molybdopterin oxidoreductase N-terminal domain D0T88_RS08035 PF01568 Molydopterin dinucleotide binding domain D0T88_RS08040 PF02613 Nitrate reductase delta subunit D0T88_RS08050 PF00226 DnaJ domain D0T88_RS08050 PF01556 DnaJ C terminal domain D0T88_RS08060 PF00328 Histidine phosphatase superfamily (branch 2) D0T88_RS08065 PF13993 YccJ-like protein D0T88_RS08070 PF03358 NADPH-dependent FMN reductase D0T88_RS08075 PF10685 Stress-induced bacterial acidophilic repeat motif D0T88_RS08080 PF00860 Permease family D0T88_RS08085 PF01613 Flavin reductase like domain D0T88_RS08090 PF00881 Nitroreductase family D0T88_RS08095 PF12697 Alpha/beta hydrolase family D0T88_RS08100 PF01042 Endoribonuclease L-PSP D0T88_RS08105 PF00857 Isochorismatase family D0T88_RS08110 PF00296 Luciferase-like monooxygenase D0T88_RS08115 PF00440 Bacterial regulatory proteins, tetR family D0T88_RS08115 PF08362 YcdC-like protein, C-terminal region D0T88_RS08120 PF14850 DNA-binding domain of Proline dehydrogenase D0T88_RS08120 PF18327 Proline utilization A proline dehydrogenase N-terminal domain D0T88_RS08120 PF00171 Aldehyde dehydrogenase family D0T88_RS08120 PF01619 Proline dehydrogenase D0T88_RS08130 PF00474 Sodium:solute symporter family D0T88_RS08135 PF03239 Iron permease FTR1 family D0T88_RS08140 PF13473 Cupredoxin-like domain D0T88_RS08140 PF09375 Imelysin D0T88_RS08145 PF04261 Dyp-type peroxidase family D0T88_RS08150 PF02562 PhoH-like protein D0T88_RS08155 PF13994 PgaD-like protein D0T88_RS08160 PF00535 Glycosyl transferase family 2 D0T88_RS08165 PF14883 Hypothetical glycosyl hydrolase family 13 D0T88_RS08165 PF01522 Polysaccharide deacetylase D0T88_RS08175 PF17158 Membrane-associated sensor, integral membrane domain D0T88_RS08175 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS08200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D0T88_RS08205 PF02811 PHP domain D0T88_RS08210 PF02613 Nitrate reductase delta subunit D0T88_RS08215 PF06496 Protein of unknown function (DUF1097) D0T88_RS08220 PF03783 Curli production assembly/transport component CsgG D0T88_RS08225 PF10614 Type VIII secretion system (T8SS), CsgF protein D0T88_RS08230 PF10627 Curli assembly protein CsgE D0T88_RS08235 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS08240 PF07012 Curlin associated repeat D0T88_RS08245 PF07012 Curlin associated repeat D0T88_RS08250 PF10610 Thin aggregative fimbriae synthesis protein D0T88_RS08260 PF01661 Macro domain D0T88_RS08265 PF13091 PLD-like domain D0T88_RS08270 PF01757 Acyltransferase family D0T88_RS08275 PF04349 Periplasmic glucan biosynthesis protein, MdoG D0T88_RS08280 PF00535 Glycosyl transferase family 2 D0T88_RS08285 PF07119 Protein of unknown function (DUF1375) D0T88_RS08290 PF13984 MsyB protein D0T88_RS08295 PF07690 Major Facilitator Superfamily D0T88_RS08300 PF03279 Bacterial lipid A biosynthesis acyltransferase D0T88_RS08305 PF17773 UPF0176 acylphosphatase like domain D0T88_RS08305 PF12368 Rhodanase C-terminal D0T88_RS08305 PF00581 Rhodanese-like domain D0T88_RS08310 PF04264 YceI-like domain D0T88_RS08315 PF01292 Prokaryotic cytochrome b561 D0T88_RS08320 PF10968 Protein of unknown function (DUF2770) D0T88_RS08325 PF01266 FAD dependent oxidoreductase D0T88_RS08330 PF13991 BssS protein family D0T88_RS08335 PF06183 DinI-like family D0T88_RS08340 PF01979 Amidohydrolase family D0T88_RS08345 PF07273 Protein of unknown function (DUF1439) D0T88_RS08350 PF04399 Glutaredoxin 2, C terminal domain D0T88_RS08350 PF13417 Glutathione S-transferase, N-terminal domain D0T88_RS08355 PF07690 Major Facilitator Superfamily D0T88_RS08360 PF13302 Acetyltransferase (GNAT) domain D0T88_RS08365 PF04337 Protein of unknown function, DUF480 D0T88_RS08370 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D0T88_RS08375 PF03023 Lipid II flippase MurJ D0T88_RS08380 PF05130 FlgN protein D0T88_RS08385 PF04316 Anti-sigma-28 factor, FlgM D0T88_RS08390 PF13144 Chaperone for flagella basal body P-ring formation D0T88_RS08395 PF00460 Flagella basal body rod protein D0T88_RS08400 PF00460 Flagella basal body rod protein D0T88_RS08400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D0T88_RS08405 PF13860 FlgD Ig-like domain D0T88_RS08405 PF03963 Flagellar hook capping protein - N-terminal region D0T88_RS08405 PF13861 FlgD Tudor-like domain D0T88_RS08410 PF00460 Flagella basal body rod protein D0T88_RS08410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D0T88_RS08410 PF07559 Flagellar basal body protein FlaE D0T88_RS08415 PF00460 Flagella basal body rod protein D0T88_RS08415 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D0T88_RS08420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D0T88_RS08420 PF00460 Flagella basal body rod protein D0T88_RS08425 PF02107 Flagellar L-ring protein D0T88_RS08430 PF02119 Flagellar P-ring protein D0T88_RS08435 PF10135 Rod binding protein D0T88_RS08435 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase D0T88_RS08440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D0T88_RS08440 PF00460 Flagella basal body rod protein D0T88_RS08445 PF00669 Bacterial flagellin N-terminal helical region D0T88_RS08450 PF10150 Ribonuclease E/G family D0T88_RS08450 PF12111 Polyribonucleotide phosphorylase C terminal D0T88_RS08450 PF00575 S1 RNA binding domain D0T88_RS08455 PF01479 S4 domain D0T88_RS08455 PF00849 RNA pseudouridylate synthase D0T88_RS08460 PF02545 Maf-like protein D0T88_RS08465 PF02620 Large ribosomal RNA subunit accumulation protein YceD D0T88_RS08470 PF01783 Ribosomal L32p protein family D0T88_RS08475 PF02504 Fatty acid synthesis protein D0T88_RS08480 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D0T88_RS08480 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D0T88_RS08485 PF00698 Acyl transferase domain D0T88_RS08495 PF00550 Phosphopantetheine attachment site D0T88_RS08500 PF02801 Beta-ketoacyl synthase, C-terminal domain D0T88_RS08500 PF00109 Beta-ketoacyl synthase, N-terminal domain D0T88_RS08505 PF01063 Amino-transferase class IV D0T88_RS08510 PF02618 YceG-like family D0T88_RS08515 PF02223 Thymidylate kinase D0T88_RS08520 PF09115 DNA polymerase III, delta subunit, C terminal D0T88_RS08525 PF01026 TatD related DNase D0T88_RS08530 PF02378 Phosphotransferase system, EIIC D0T88_RS08530 PF00367 phosphotransferase system, EIIB D0T88_RS08535 PF00593 TonB dependent receptor D0T88_RS08535 PF07715 TonB-dependent Receptor Plug Domain D0T88_RS08540 PF01230 HIT domain D0T88_RS08545 PF07233 Protein of unknown function (DUF1425) D0T88_RS08550 PF13036 Peptidoglycan-synthase activator LpoB D0T88_RS08555 PF01636 Phosphotransferase enzyme family D0T88_RS08560 PF00933 Glycosyl hydrolase family 3 N terminal domain D0T88_RS08565 PF05728 Uncharacterised protein family (UPF0227) D0T88_RS08570 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS08575 PF05433 Glycine zipper 2TM domain D0T88_RS08580 PF00440 Bacterial regulatory proteins, tetR family D0T88_RS08585 PF07338 Protein of unknown function (DUF1471) D0T88_RS08590 PF17969 L,D-transpeptidase C-terminal domain D0T88_RS08590 PF03734 L,D-transpeptidase catalytic domain D0T88_RS08590 PF01476 LysM domain D0T88_RS08595 PF17757 UvrB interaction domain D0T88_RS08595 PF03461 TRCF domain D0T88_RS08595 PF00271 Helicase conserved C-terminal domain D0T88_RS08595 PF00270 DEAD/DEAH box helicase D0T88_RS08595 PF02559 CarD-like/TRCF domain D0T88_RS08600 PF01757 Acyltransferase family D0T88_RS08605 PF12704 MacB-like periplasmic core domain D0T88_RS08605 PF02687 FtsX-like permease family D0T88_RS08610 PF00005 ABC transporter D0T88_RS08615 PF02687 FtsX-like permease family D0T88_RS08615 PF12704 MacB-like periplasmic core domain D0T88_RS08620 PF00480 ROK family D0T88_RS08625 PF02146 Sir2 family D0T88_RS08630 PF04536 TPM domain D0T88_RS08635 PF12158 Protein of unknown function (DUF3592) D0T88_RS08640 PF13416 Bacterial extracellular solute-binding protein D0T88_RS08645 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS08660 PF00589 Phage integrase family D0T88_RS08660 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain D0T88_RS08670 PF12684 PDDEXK-like domain of unknown function (DUF3799) D0T88_RS08670 PF06630 Enterobacterial exodeoxyribonuclease VIII D0T88_RS08675 PF07358 Protein of unknown function (DUF1482) D0T88_RS08680 PF05358 DicB protein D0T88_RS08695 PF07151 Protein of unknown function (DUF1391) D0T88_RS08725 PF01695 IstB-like ATP binding protein D0T88_RS08750 PF03050 Transposase IS66 family D0T88_RS08750 PF13005 zinc-finger binding domain of transposase IS66 D0T88_RS08750 PF13817 IS66 C-terminal element D0T88_RS08750 PF13007 Transposase C of IS166 homeodomain D0T88_RS08755 PF05717 IS66 Orf2 like protein D0T88_RS08770 PF01848 Hok/gef family D0T88_RS08785 PF06147 Protein of unknown function (DUF968) D0T88_RS08790 PF05866 Endodeoxyribonuclease RusA D0T88_RS08795 PF06530 Phage antitermination protein Q D0T88_RS08810 PF01555 DNA methylase D0T88_RS08870 PF07471 Phage DNA packaging protein Nu1 D0T88_RS08875 PF02413 Caudovirales tail fibre assembly protein, lambda gpK D0T88_RS08880 PF02831 gpW D0T88_RS08890 PF01343 Peptidase family S49 D0T88_RS08900 PF03864 Phage major capsid protein E D0T88_RS08975 PF03335 Phage tail fibre repeat D0T88_RS08975 PF07484 Phage Tail Collar Domain D0T88_RS08975 PF08400 Prophage tail fibre N-terminal D0T88_RS08980 PF02413 Caudovirales tail fibre assembly protein, lambda gpK D0T88_RS08985 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS08990 PF00005 ABC transporter D0T88_RS08990 PF08402 TOBE domain D0T88_RS08995 PF01546 Peptidase family M20/M25/M40 D0T88_RS08995 PF07687 Peptidase dimerisation domain D0T88_RS09000 PF08007 Cupin superfamily protein D0T88_RS09005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS09005 PF08918 PhoQ Sensor D0T88_RS09010 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS09010 PF00072 Response regulator receiver domain D0T88_RS09015 PF08328 Adenylosuccinate lyase C-terminal D0T88_RS09015 PF00206 Lyase D0T88_RS09020 PF04356 Protein of unknown function (DUF489) D0T88_RS09030 PF00293 NUDIX domain D0T88_RS09035 PF00849 RNA pseudouridylate synthase D0T88_RS09040 PF00180 Isocitrate/isopropylmalate dehydrogenase D0T88_RS09060 PF07166 Protein of unknown function (DUF1398) D0T88_RS09065 PF13411 MerR HTH family regulatory protein D0T88_RS09070 PF00563 EAL domain D0T88_RS09070 PF04940 Sensors of blue-light using FAD D0T88_RS09075 PF10798 Biofilm development protein YmgB/AriR D0T88_RS09085 PF10798 Biofilm development protein YmgB/AriR D0T88_RS09095 PF00563 EAL domain D0T88_RS09095 PF12792 CSS motif domain associated with EAL D0T88_RS09110 PF03797 Autotransporter beta-domain D0T88_RS09115 PF16456 YmgD protein D0T88_RS09120 PF13436 Glycine-zipper domain D0T88_RS09145 PF03776 Septum formation topological specificity factor MinE D0T88_RS09150 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D0T88_RS09155 PF03775 Septum formation inhibitor MinC, C-terminal domain D0T88_RS09155 PF05209 Septum formation inhibitor MinC, N-terminal domain D0T88_RS09160 PF05666 Fels-1 Prophage Protein-like D0T88_RS09165 PF04151 Bacterial pre-peptidase C-terminal domain D0T88_RS09170 PF05166 YcgL domain D0T88_RS09175 PF01557 Fumarylacetoacetate (FAA) hydrolase family D0T88_RS09180 PF03692 Putative zinc- or iron-chelating domain D0T88_RS09190 PF00717 Peptidase S24-like D0T88_RS09195 PF11799 impB/mucB/samB family C-terminal domain D0T88_RS09195 PF11798 IMS family HHH motif D0T88_RS09195 PF00817 impB/mucB/samB family D0T88_RS09195 PF13438 Domain of unknown function (DUF4113) D0T88_RS09200 PF02600 Disulfide bond formation protein DsbB D0T88_RS09205 PF06450 Bacterial Na+/H+ antiporter B (NhaB) D0T88_RS09210 PF07840 FadR C-terminal domain D0T88_RS09210 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS09215 PF04293 SpoVR like protein D0T88_RS09220 PF01266 FAD dependent oxidoreductase D0T88_RS09225 PF01168 Alanine racemase, N-terminal domain D0T88_RS09225 PF00842 Alanine racemase, C-terminal domain D0T88_RS09230 PF02080 TrkA-C domain D0T88_RS09230 PF03471 Transporter associated domain D0T88_RS09230 PF00999 Sodium/hydrogen exchanger family D0T88_RS09235 PF17676 LD-carboxypeptidase C-terminal domain D0T88_RS09235 PF02016 LD-carboxypeptidase N-terminal domain D0T88_RS09240 PF01464 Transglycosylase SLT domain D0T88_RS09245 PF07238 PilZ domain D0T88_RS09245 PF07317 Flagellar regulator YcgR D0T88_RS09250 PF04226 Transglycosylase associated protein D0T88_RS09260 PF01204 Trehalase D0T88_RS09265 PF00381 PTS HPr component phosphorylation site D0T88_RS09265 PF00391 PEP-utilising enzyme, mobile domain D0T88_RS09265 PF05524 PEP-utilising enzyme, N-terminal D0T88_RS09265 PF03610 PTS system fructose IIA component D0T88_RS09270 PF02734 DAK2 domain D0T88_RS09275 PF02733 Dak1 domain D0T88_RS09280 PF00158 Sigma-54 interaction domain D0T88_RS09280 PF00989 PAS fold D0T88_RS09280 PF02954 Bacterial regulatory protein, Fis family D0T88_RS09285 PF03212 Pertactin D0T88_RS09285 PF03797 Autotransporter beta-domain D0T88_RS09290 PF01926 50S ribosome-binding GTPase D0T88_RS09290 PF06071 Protein of unknown function (DUF933) D0T88_RS09295 PF01195 Peptidyl-tRNA hydrolase D0T88_RS09300 PF10762 Protein of unknown function (DUF2583) D0T88_RS09305 PF00916 Sulfate permease family D0T88_RS09305 PF01740 STAS domain D0T88_RS09310 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D0T88_RS09310 PF14572 Phosphoribosyl synthetase-associated domain D0T88_RS09315 PF08544 GHMP kinases C terminal D0T88_RS09315 PF00288 GHMP kinases N terminal domain D0T88_RS09320 PF03550 Outer membrane lipoprotein LolB D0T88_RS09325 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D0T88_RS09325 PF01488 Shikimate / quinate 5-dehydrogenase D0T88_RS09325 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D0T88_RS09330 PF00472 RF-1 domain D0T88_RS09330 PF03462 PCRF domain D0T88_RS09335 PF17827 PrmC N-terminal domain D0T88_RS09335 PF13847 Methyltransferase domain D0T88_RS09340 PF04247 Invasion gene expression up-regulator, SirB D0T88_RS09345 PF13369 Transglutaminase-like superfamily D0T88_RS09350 PF00793 DAHP synthetase I family D0T88_RS09355 PF13940 Toxin Ldr, type I toxin-antitoxin system D0T88_RS09360 PF13940 Toxin Ldr, type I toxin-antitoxin system D0T88_RS09365 PF13940 Toxin Ldr, type I toxin-antitoxin system D0T88_RS09370 PF01699 Sodium/calcium exchanger protein D0T88_RS09375 PF06150 ChaB D0T88_RS09380 PF04752 ChaC-like protein D0T88_RS09385 PF02635 DsrE/DsrF-like family D0T88_RS09390 PF11924 Inverse autotransporter, beta-domain D0T88_RS09395 PF00072 Response regulator receiver domain D0T88_RS09395 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS09400 PF07730 Histidine kinase D0T88_RS09400 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term D0T88_RS09400 PF00672 HAMP domain D0T88_RS09400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS09405 PF07690 Major Facilitator Superfamily D0T88_RS09410 PF01568 Molydopterin dinucleotide binding domain D0T88_RS09410 PF00384 Molybdopterin oxidoreductase D0T88_RS09410 PF14710 Respiratory nitrate reductase alpha N-terminal D0T88_RS09415 PF14711 Respiratory nitrate reductase beta C-terminal D0T88_RS09415 PF13247 4Fe-4S dicluster domain D0T88_RS09420 PF02613 Nitrate reductase delta subunit D0T88_RS09425 PF02665 Nitrate reductase gamma subunit D0T88_RS09450 PF01842 ACT domain D0T88_RS09450 PF00551 Formyl transferase D0T88_RS09455 PF02810 SEC-C motif D0T88_RS09460 PF01734 Patatin-like phospholipase D0T88_RS09465 PF00072 Response regulator receiver domain D0T88_RS09470 PF00483 Nucleotidyl transferase D0T88_RS09475 PF00816 H-NS histone family D0T88_RS09480 PF00265 Thymidine kinase D0T88_RS09485 PF00465 Iron-containing alcohol dehydrogenase D0T88_RS09485 PF00171 Aldehyde dehydrogenase family D0T88_RS09490 PF01914 MarC family integral membrane protein D0T88_RS09500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0T88_RS09505 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS09510 PF12911 N-terminal TM domain of oligopeptide transport permease C D0T88_RS09510 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS09515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0T88_RS09515 PF00005 ABC transporter D0T88_RS09520 PF00005 ABC transporter D0T88_RS09520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0T88_RS09525 PF04269 Protein of unknown function, DUF440 D0T88_RS09530 PF13091 PLD-like domain D0T88_RS09530 PF13396 Phospholipase_D-nuclease N-terminal D0T88_RS09540 PF02254 TrkA-N domain D0T88_RS09540 PF07885 Ion channel D0T88_RS09545 PF03795 YCII-related domain D0T88_RS09550 PF03544 Gram-negative bacterial TonB protein C-terminal D0T88_RS09555 PF03061 Thioesterase superfamily D0T88_RS09560 PF04279 Intracellular septation protein A D0T88_RS09575 PF03922 OmpW family D0T88_RS09580 PF05974 Domain of unknown function (DUF892) D0T88_RS09585 PF05974 Domain of unknown function (DUF892) D0T88_RS09590 PF10685 Stress-induced bacterial acidophilic repeat motif D0T88_RS09595 PF00290 Tryptophan synthase alpha chain D0T88_RS09600 PF00291 Pyridoxal-phosphate dependent enzyme D0T88_RS09605 PF00218 Indole-3-glycerol phosphate synthase D0T88_RS09605 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D0T88_RS09610 PF00591 Glycosyl transferase family, a/b domain D0T88_RS09610 PF02885 Glycosyl transferase family, helical bundle domain D0T88_RS09610 PF00117 Glutamine amidotransferase class-I D0T88_RS09615 PF04715 Anthranilate synthase component I, N terminal region D0T88_RS09615 PF00425 chorismate binding enzyme D0T88_RS09620 PF08255 Trp-operon Leader Peptide D0T88_RS09625 PF02811 PHP domain D0T88_RS09630 PF01300 Telomere recombination D0T88_RS09635 PF00849 RNA pseudouridylate synthase D0T88_RS09635 PF01479 S4 domain D0T88_RS09640 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP D0T88_RS09640 PF12557 Cob(I)alamin adenosyltransferase N terminal D0T88_RS09645 PF00106 short chain dehydrogenase D0T88_RS09650 PF08496 Peptidase family S49 N-terminal D0T88_RS09650 PF01343 Peptidase family S49 D0T88_RS09655 PF10692 Protein of unknown function (DUF2498) D0T88_RS09660 PF01131 DNA topoisomerase D0T88_RS09660 PF08272 Topoisomerase I zinc-ribbon-like D0T88_RS09660 PF01396 Topoisomerase DNA binding C4 zinc finger D0T88_RS09660 PF01751 Toprim domain D0T88_RS09665 PF03466 LysR substrate binding domain D0T88_RS09665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS09685 PF00330 Aconitase family (aconitate hydratase) D0T88_RS09685 PF00694 Aconitase C-terminal domain D0T88_RS09690 PF00925 GTP cyclohydrolase II D0T88_RS09695 PF01569 PAP2 superfamily D0T88_RS09700 PF06305 Lipopolysaccharide assembly protein A domain D0T88_RS09705 PF18073 Rubredoxin metal binding domain D0T88_RS09710 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D0T88_RS09715 PF01253 Translation initiation factor SUI1 D0T88_RS09720 PF05433 Glycine zipper 2TM domain D0T88_RS09725 PF08220 DeoR-like helix-turn-helix domain D0T88_RS09725 PF00455 DeoR C terminal sensor domain D0T88_RS09735 PF00563 EAL domain D0T88_RS09735 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS09735 PF13426 PAS domain D0T88_RS09745 PF00773 RNB domain D0T88_RS09745 PF17876 Cold shock domain D0T88_RS09745 PF00575 S1 RNA binding domain D0T88_RS09745 PF08206 Ribonuclease B OB domain D0T88_RS09760 PF04480 Protein of unknown function (DUF559) D0T88_RS09765 PF00005 ABC transporter D0T88_RS09770 PF00005 ABC transporter D0T88_RS09770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0T88_RS09775 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS09775 PF12911 N-terminal TM domain of oligopeptide transport permease C D0T88_RS09780 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS09785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0T88_RS09790 PF10820 Protein of unknown function (DUF2543) D0T88_RS09795 PF00324 Amino acid permease D0T88_RS09805 PF00120 Glutamine synthetase, catalytic domain D0T88_RS09810 PF07722 Peptidase C26 D0T88_RS09815 PF01381 Helix-turn-helix D0T88_RS09815 PF07883 Cupin domain D0T88_RS09820 PF00171 Aldehyde dehydrogenase family D0T88_RS09825 PF01266 FAD dependent oxidoreductase D0T88_RS09830 PF00202 Aminotransferase class-III D0T88_RS09835 PF00158 Sigma-54 interaction domain D0T88_RS09835 PF02954 Bacterial regulatory protein, Fis family D0T88_RS09840 PF04012 PspA/IM30 family D0T88_RS09845 PF06667 Phage shock protein B D0T88_RS09850 PF04024 PspC domain D0T88_RS09855 PF09584 Phage shock protein PspD (Phageshock_PspD) D0T88_RS09860 PF00581 Rhodanese-like domain D0T88_RS09865 PF00128 Alpha amylase, catalytic domain D0T88_RS09870 PF01547 Bacterial extracellular solute-binding protein D0T88_RS09875 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS09880 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS09885 PF00107 Zinc-binding dehydrogenase D0T88_RS09890 PF01261 Xylose isomerase-like TIM barrel D0T88_RS09895 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D0T88_RS09895 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D0T88_RS09900 PF03633 Glycosyl hydrolase family 65, C-terminal domain D0T88_RS09900 PF03632 Glycosyl hydrolase family 65 central catalytic domain D0T88_RS09900 PF03636 Glycosyl hydrolase family 65, N-terminal domain D0T88_RS09905 PF13419 Haloacid dehalogenase-like hydrolase D0T88_RS09910 PF03459 TOBE domain D0T88_RS09910 PF17912 MalK OB fold domain D0T88_RS09910 PF00005 ABC transporter D0T88_RS09915 PF09381 Outer membrane protein G (OmpG) D0T88_RS09920 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D0T88_RS09920 PF00356 Bacterial regulatory proteins, lacI family D0T88_RS09925 PF04317 YcjX-like family, DUF463 D0T88_RS09930 PF05128 Domain of unknown function (DUF697) D0T88_RS09935 PF13188 PAS domain D0T88_RS09935 PF18024 Helix-turn-helix domain D0T88_RS09935 PF00158 Sigma-54 interaction domain D0T88_RS09940 PF08534 Redoxin D0T88_RS09945 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D0T88_RS09945 PF13378 Enolase C-terminal domain-like D0T88_RS09950 PF00246 Zinc carboxypeptidase D0T88_RS09965 PF12146 Serine aminopeptidase, S33 D0T88_RS09970 PF03466 LysR substrate binding domain D0T88_RS09970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS09975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0T88_RS09980 PF00924 Mechanosensitive ion channel D0T88_RS09985 PF10749 Protein of unknown function (DUF2534) D0T88_RS09990 PF00582 Universal stress protein family D0T88_RS09995 PF00325 Bacterial regulatory proteins, crp family D0T88_RS09995 PF00027 Cyclic nucleotide-binding domain D0T88_RS10000 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D0T88_RS10000 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D0T88_RS10005 PF03806 AbgT putative transporter family D0T88_RS10010 PF01546 Peptidase family M20/M25/M40 D0T88_RS10015 PF01546 Peptidase family M20/M25/M40 D0T88_RS10015 PF07687 Peptidase dimerisation domain D0T88_RS10020 PF03466 LysR substrate binding domain D0T88_RS10020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS10025 PF01713 Smr domain D0T88_RS10030 PF08448 PAS fold D0T88_RS10030 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS10035 PF01544 CorA-like Mg2+ transporter protein D0T88_RS10040 PF03880 DbpA RNA binding domain D0T88_RS10040 PF00271 Helicase conserved C-terminal domain D0T88_RS10040 PF00270 DEAD/DEAH box helicase D0T88_RS10045 PF01171 PP-loop family D0T88_RS10050 PF00582 Universal stress protein family D0T88_RS10055 PF00267 Gram-negative porin D0T88_RS10060 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg D0T88_RS10060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D0T88_RS10060 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II D0T88_RS10060 PF10371 Domain of unknown function D0T88_RS10060 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase D0T88_RS10065 PF03891 Domain of unknown function (DUF333) D0T88_RS10070 PF03724 META domain D0T88_RS10075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D0T88_RS10075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D0T88_RS10080 PF11739 Dicarboxylate transport D0T88_RS10085 PF13617 YnbE-like lipoprotein D0T88_RS10090 PF07027 Protein of unknown function (DUF1318) D0T88_RS10095 PF14525 AraC-binding-like domain D0T88_RS10095 PF12833 Helix-turn-helix domain D0T88_RS10100 PF00171 Aldehyde dehydrogenase family D0T88_RS10105 PF02727 Copper amine oxidase, N2 domain D0T88_RS10105 PF02728 Copper amine oxidase, N3 domain D0T88_RS10105 PF01179 Copper amine oxidase, enzyme domain D0T88_RS10105 PF07833 Copper amine oxidase N-terminal domain D0T88_RS10110 PF00171 Aldehyde dehydrogenase family D0T88_RS10110 PF01575 MaoC like domain D0T88_RS10115 PF05138 Phenylacetic acid catabolic protein D0T88_RS10120 PF06243 Phenylacetic acid degradation B D0T88_RS10125 PF05138 Phenylacetic acid catabolic protein D0T88_RS10130 PF01883 Iron-sulfur cluster assembly protein D0T88_RS10135 PF00970 Oxidoreductase FAD-binding domain D0T88_RS10135 PF00175 Oxidoreductase NAD-binding domain D0T88_RS10135 PF00111 2Fe-2S iron-sulfur cluster binding domain D0T88_RS10140 PF00378 Enoyl-CoA hydratase/isomerase D0T88_RS10145 PF00378 Enoyl-CoA hydratase/isomerase D0T88_RS10150 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain D0T88_RS10150 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D0T88_RS10150 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D0T88_RS10155 PF03061 Thioesterase superfamily D0T88_RS10160 PF02803 Thiolase, C-terminal domain D0T88_RS10160 PF00108 Thiolase, N-terminal domain D0T88_RS10165 PF14535 AMP-binding enzyme C-terminal domain D0T88_RS10165 PF00501 AMP-binding enzyme D0T88_RS10170 PF07848 PaaX-like protein D0T88_RS10170 PF08223 PaaX-like protein C-terminal domain D0T88_RS10175 PF00132 Bacterial transferase hexapeptide (six repeats) D0T88_RS10180 PF00248 Aldo/keto reductase family D0T88_RS10185 PF10971 Protein of unknown function (DUF2773) D0T88_RS10190 PF01066 CDP-alcohol phosphatidyltransferase D0T88_RS10200 PF12146 Serine aminopeptidase, S33 D0T88_RS10200 PF12147 Putative methyltransferase D0T88_RS10205 PF00782 Dual specificity phosphatase, catalytic domain D0T88_RS10210 PF02525 Flavodoxin-like fold D0T88_RS10215 PF00271 Helicase conserved C-terminal domain D0T88_RS10215 PF04408 Helicase associated domain (HA2) D0T88_RS10215 PF11898 Domain of unknown function (DUF3418) D0T88_RS10215 PF00270 DEAD/DEAH box helicase D0T88_RS10215 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D0T88_RS10220 PF02698 DUF218 domain D0T88_RS10225 PF00171 Aldehyde dehydrogenase family D0T88_RS10230 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D0T88_RS10230 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D0T88_RS10235 PF01292 Prokaryotic cytochrome b561 D0T88_RS10245 PF01848 Hok/gef family D0T88_RS10250 PF00672 HAMP domain D0T88_RS10250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0T88_RS10250 PF02203 Tar ligand binding domain homologue D0T88_RS10255 PF03466 LysR substrate binding domain D0T88_RS10255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS10260 PF07063 Domain of unknown function (DUF1338) D0T88_RS10265 PF04349 Periplasmic glucan biosynthesis protein, MdoG D0T88_RS10270 PF04325 Protein of unknown function (DUF465) D0T88_RS10275 PF13302 Acetyltransferase (GNAT) domain D0T88_RS10280 PF18836 Beta solenoid repeat from YDCK D0T88_RS10285 PF03595 Voltage-dependent anion channel D0T88_RS10290 PF03848 Tellurite resistance protein TehB D0T88_RS10295 PF11769 Protein of unknown function (DUF3313) D0T88_RS10305 PF12323 Helix-turn-helix domain D0T88_RS10305 PF07282 Putative transposase DNA-binding domain D0T88_RS10305 PF01385 Probable transposase D0T88_RS10310 PF03594 Benzoate membrane transport protein D0T88_RS10315 PF07883 Cupin domain D0T88_RS10315 PF01381 Helix-turn-helix D0T88_RS10320 PF12392 Collagenase D0T88_RS10320 PF01136 Peptidase family U32 D0T88_RS10325 PF10829 Protein of unknown function (DUF2554) D0T88_RS10330 PF07927 HicA toxin of bacterial toxin-antitoxin, D0T88_RS10335 PF01381 Helix-turn-helix D0T88_RS10335 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system D0T88_RS10340 PF00155 Aminotransferase class I and II D0T88_RS10340 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS10345 PF13416 Bacterial extracellular solute-binding protein D0T88_RS10355 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS10360 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS10365 PF00171 Aldehyde dehydrogenase family D0T88_RS10375 PF10753 Toxin GhoT_OrtT D0T88_RS10380 PF10735 Protein of unknown function (DUF2526) D0T88_RS10385 PF04657 Putative inner membrane exporter, YdcZ D0T88_RS10390 PF00583 Acetyltransferase (GNAT) family D0T88_RS10395 PF00107 Zinc-binding dehydrogenase D0T88_RS10395 PF16884 N-terminal domain of oxidoreductase D0T88_RS10400 PF07729 FCD domain D0T88_RS10400 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS10405 PF00593 TonB dependent receptor D0T88_RS10405 PF07715 TonB-dependent Receptor Plug Domain D0T88_RS10415 PF00324 Amino acid permease D0T88_RS10420 PF13417 Glutathione S-transferase, N-terminal domain D0T88_RS10425 PF17520 Family of unknown function (DUF5445) D0T88_RS10430 PF04717 Type VI secretion system, phage-baseplate injector D0T88_RS10435 PF14220 Domain of unknown function (DUF4329) D0T88_RS10435 PF03527 RHS protein D0T88_RS10435 PF05593 RHS Repeat D0T88_RS10460 PF01361 Tautomerase enzyme D0T88_RS10465 PF01613 Flavin reductase like domain D0T88_RS10470 PF00797 N-acetyltransferase D0T88_RS10475 PF02567 Phenazine biosynthesis-like protein D0T88_RS10480 PF02665 Nitrate reductase gamma subunit D0T88_RS10485 PF02613 Nitrate reductase delta subunit D0T88_RS10490 PF13247 4Fe-4S dicluster domain D0T88_RS10490 PF14711 Respiratory nitrate reductase beta C-terminal D0T88_RS10495 PF00384 Molybdopterin oxidoreductase D0T88_RS10495 PF01568 Molydopterin dinucleotide binding domain D0T88_RS10495 PF14710 Respiratory nitrate reductase alpha N-terminal D0T88_RS10500 PF07690 Major Facilitator Superfamily D0T88_RS10510 PF00267 Gram-negative porin D0T88_RS10515 PF00892 EamA-like transporter family D0T88_RS10525 PF13247 4Fe-4S dicluster domain D0T88_RS10525 PF09163 Formate dehydrogenase N, transmembrane D0T88_RS10525 PF12800 4Fe-4S binding domain D0T88_RS10530 PF01292 Prokaryotic cytochrome b561 D0T88_RS10535 PF01381 Helix-turn-helix D0T88_RS10540 PF00107 Zinc-binding dehydrogenase D0T88_RS10540 PF08240 Alcohol dehydrogenase GroES-like domain D0T88_RS10545 PF00390 Malic enzyme, N-terminal domain D0T88_RS10545 PF03949 Malic enzyme, NAD binding domain D0T88_RS10550 PF08136 30S ribosomal protein subunit S22 family D0T88_RS10555 PF10684 Putative biofilm-dependent modulation protein D0T88_RS10560 PF02566 OsmC-like protein D0T88_RS10565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0T88_RS10565 PF00005 ABC transporter D0T88_RS10570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0T88_RS10570 PF00005 ABC transporter D0T88_RS10575 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS10575 PF12911 N-terminal TM domain of oligopeptide transport permease C D0T88_RS10580 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS10585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0T88_RS10590 PF01427 D-ala-D-ala dipeptidase D0T88_RS10600 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS10610 PF02638 Glycosyl hydrolase-like 10 D0T88_RS10615 PF13520 Amino acid permease D0T88_RS10620 PF00282 Pyridoxal-dependent decarboxylase conserved domain D0T88_RS10625 PF00675 Insulinase (Peptidase family M16) D0T88_RS10625 PF05193 Peptidase M16 inactive domain D0T88_RS10630 PF07715 TonB-dependent Receptor Plug Domain D0T88_RS10635 PF00005 ABC transporter D0T88_RS10635 PF06472 ABC transporter transmembrane region 2 D0T88_RS10645 PF13186 Iron-sulfur cluster-binding domain D0T88_RS10645 PF04055 Radical SAM superfamily D0T88_RS10650 PF00884 Sulfatase D0T88_RS10655 PF12833 Helix-turn-helix domain D0T88_RS10660 PF17073 Two-component-system connector protein D0T88_RS10665 PF00384 Molybdopterin oxidoreductase D0T88_RS10670 PF09160 FimH, mannose binding D0T88_RS10675 PF00419 Fimbrial protein D0T88_RS10680 PF00419 Fimbrial protein D0T88_RS10690 PF13817 IS66 C-terminal element D0T88_RS10690 PF13007 Transposase C of IS166 homeodomain D0T88_RS10690 PF03050 Transposase IS66 family D0T88_RS10690 PF13005 zinc-finger binding domain of transposase IS66 D0T88_RS10695 PF05717 IS66 Orf2 like protein D0T88_RS10705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D0T88_RS10705 PF02753 Pili assembly chaperone PapD, C-terminal domain D0T88_RS10710 PF00419 Fimbrial protein D0T88_RS10715 PF07804 HipA-like C-terminal domain D0T88_RS10715 PF13657 HipA N-terminal domain D0T88_RS10720 PF01381 Helix-turn-helix D0T88_RS10725 PF13018 Extended Signal Peptide of Type V secretion system D0T88_RS10730 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D0T88_RS10730 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D0T88_RS10735 PF04198 Putative sugar-binding domain D0T88_RS10740 PF00005 ABC transporter D0T88_RS10745 PF02653 Branched-chain amino acid transport system / permease component D0T88_RS10750 PF02653 Branched-chain amino acid transport system / permease component D0T88_RS10755 PF13407 Periplasmic binding protein domain D0T88_RS10760 PF01791 DeoC/LacD family aldolase D0T88_RS10765 PF03992 Antibiotic biosynthesis monooxygenase D0T88_RS10770 PF13649 Methyltransferase domain D0T88_RS10775 PF01062 Bestrophin, RFP-TM, chloride channel D0T88_RS10780 PF01232 Mannitol dehydrogenase Rossmann domain D0T88_RS10780 PF08125 Mannitol dehydrogenase C-terminal domain D0T88_RS10785 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS10790 PF13811 Domain of unknown function (DUF4186) D0T88_RS10795 PF04960 Glutaminase D0T88_RS10800 PF00171 Aldehyde dehydrogenase family D0T88_RS10805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS10805 PF03466 LysR substrate binding domain D0T88_RS10815 PF07690 Major Facilitator Superfamily D0T88_RS10820 PF01914 MarC family integral membrane protein D0T88_RS10825 PF01047 MarR family D0T88_RS10830 PF12833 Helix-turn-helix domain D0T88_RS10835 PF13999 MarB protein D0T88_RS10845 PF11471 Maltoporin periplasmic N-terminal extension D0T88_RS10845 PF02264 LamB porin D0T88_RS10850 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit D0T88_RS10855 PF02378 Phosphotransferase system, EIIC D0T88_RS10860 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0T88_RS10865 PF07702 UTRA domain D0T88_RS10865 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS10870 PF00892 EamA-like transporter family D0T88_RS10885 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS10890 PF04076 Bacterial OB fold (BOF) protein D0T88_RS10895 PF02464 Competence-damaged protein D0T88_RS10900 PF01432 Peptidase family M3 D0T88_RS10905 PF00106 short chain dehydrogenase D0T88_RS10910 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS10910 PF07729 FCD domain D0T88_RS10915 PF14001 YdfZ protein D0T88_RS10920 PF08125 Mannitol dehydrogenase C-terminal domain D0T88_RS10920 PF01232 Mannitol dehydrogenase Rossmann domain D0T88_RS10930 PF01297 Zinc-uptake complex component A periplasmic D0T88_RS10935 PF00005 ABC transporter D0T88_RS10940 PF00950 ABC 3 transport family D0T88_RS10945 PF00950 ABC 3 transport family D0T88_RS10955 PF03895 YadA-like membrane anchor domain D0T88_RS11005 PF06791 Prophage tail length tape measure protein D0T88_RS11045 PF03864 Phage major capsid protein E D0T88_RS11055 PF01343 Peptidase family S49 D0T88_RS11065 PF02831 gpW D0T88_RS11070 PF02413 Caudovirales tail fibre assembly protein, lambda gpK D0T88_RS11075 PF07471 Phage DNA packaging protein Nu1 D0T88_RS11080 PF13132 Domain of unknown function (DUF3950) D0T88_RS11085 PF06085 Lipoprotein Rz1 precursor D0T88_RS11090 PF00959 Phage lysozyme D0T88_RS11100 PF07041 Protein of unknown function (DUF1327) D0T88_RS11105 PF04971 Bacteriophage P21 holin S D0T88_RS11110 PF01555 DNA methylase D0T88_RS11125 PF06530 Phage antitermination protein Q D0T88_RS11130 PF05866 Endodeoxyribonuclease RusA D0T88_RS11135 PF06147 Protein of unknown function (DUF968) D0T88_RS11150 PF01848 Hok/gef family D0T88_RS11165 PF03050 Transposase IS66 family D0T88_RS11165 PF13005 zinc-finger binding domain of transposase IS66 D0T88_RS11165 PF13007 Transposase C of IS166 homeodomain D0T88_RS11165 PF13817 IS66 C-terminal element D0T88_RS11170 PF05717 IS66 Orf2 like protein D0T88_RS11195 PF01381 Helix-turn-helix D0T88_RS11200 PF07151 Protein of unknown function (DUF1391) D0T88_RS11215 PF05358 DicB protein D0T88_RS11220 PF07358 Protein of unknown function (DUF1482) D0T88_RS11235 PF12167 Arm DNA-binding domain D0T88_RS11235 PF00589 Phage integrase family D0T88_RS11245 PF00107 Zinc-binding dehydrogenase D0T88_RS11245 PF08240 Alcohol dehydrogenase GroES-like domain D0T88_RS11250 PF13378 Enolase C-terminal domain-like D0T88_RS11250 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D0T88_RS11255 PF02694 Uncharacterised BCR, YnfA/UPF0060 family D0T88_RS11260 PF06932 Protein of unknown function (DUF1283) D0T88_RS11265 PF13302 Acetyltransferase (GNAT) domain D0T88_RS11270 PF06788 Uncharacterised protein family (UPF0257) D0T88_RS11275 PF06649 Protein of unknown function (DUF1161) D0T88_RS11280 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D0T88_RS11280 PF01568 Molydopterin dinucleotide binding domain D0T88_RS11280 PF00384 Molybdopterin oxidoreductase D0T88_RS11285 PF01568 Molydopterin dinucleotide binding domain D0T88_RS11285 PF00384 Molybdopterin oxidoreductase D0T88_RS11285 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D0T88_RS11290 PF13247 4Fe-4S dicluster domain D0T88_RS11290 PF12800 4Fe-4S binding domain D0T88_RS11295 PF04976 DMSO reductase anchor subunit (DmsC) D0T88_RS11300 PF02613 Nitrate reductase delta subunit D0T88_RS11305 PF00654 Voltage gated chloride channel D0T88_RS11315 PF00480 ROK family D0T88_RS11320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS11320 PF03466 LysR substrate binding domain D0T88_RS11340 PF00089 Trypsin D0T88_RS11345 PF00893 Small Multidrug Resistance protein D0T88_RS11350 PF00893 Small Multidrug Resistance protein D0T88_RS11355 PF01594 AI-2E family transporter D0T88_RS11360 PF02233 NAD(P) transhydrogenase beta subunit D0T88_RS11365 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D0T88_RS11365 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch D0T88_RS11365 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D0T88_RS11370 PF07338 Protein of unknown function (DUF1471) D0T88_RS11375 PF13520 Amino acid permease D0T88_RS11385 PF06942 GlpM protein D0T88_RS11390 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS11390 PF00072 Response regulator receiver domain D0T88_RS11395 PF00672 HAMP domain D0T88_RS11395 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS11395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS11400 PF05472 DNA replication terminus site-binding protein (Ter protein) D0T88_RS11405 PF10415 Fumarase C C-terminus D0T88_RS11405 PF00206 Lyase D0T88_RS11410 PF05681 Fumarate hydratase (Fumerase) D0T88_RS11410 PF05683 Fumarase C-terminus D0T88_RS11415 PF01238 Phosphomannose isomerase type I D0T88_RS11420 PF06097 Bacterial protein of unknown function (DUF945) D0T88_RS11425 PF03573 outer membrane porin, OprD family D0T88_RS11435 PF02836 Glycosyl hydrolases family 2, TIM barrel domain D0T88_RS11435 PF02837 Glycosyl hydrolases family 2, sugar binding domain D0T88_RS11435 PF00703 Glycosyl hydrolases family 2 D0T88_RS11440 PF00440 Bacterial regulatory proteins, tetR family D0T88_RS11450 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D0T88_RS11450 PF00356 Bacterial regulatory proteins, lacI family D0T88_RS11455 PF02378 Phosphotransferase system, EIIC D0T88_RS11455 PF00367 phosphotransferase system, EIIB D0T88_RS11460 PF00155 Aminotransferase class I and II D0T88_RS11465 PF00962 Adenosine/AMP deaminase D0T88_RS11470 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D0T88_RS11470 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D0T88_RS11480 PF05321 Haemolysin expression modulating protein D0T88_RS11485 PF10754 Protein of unknown function (DUF2569) D0T88_RS11490 PF02508 Rnf-Nqr subunit, membrane protein D0T88_RS11495 PF04060 Putative Fe-S cluster D0T88_RS11500 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D0T88_RS11500 PF13375 RnfC Barrel sandwich hybrid domain D0T88_RS11500 PF10531 SLBB domain D0T88_RS11500 PF12838 4Fe-4S dicluster domain D0T88_RS11505 PF03116 NQR2, RnfD, RnfE family D0T88_RS11510 PF04205 FMN-binding domain D0T88_RS11515 PF02508 Rnf-Nqr subunit, membrane protein D0T88_RS11520 PF10576 Iron-sulfur binding domain of endonuclease III D0T88_RS11520 PF00633 Helix-hairpin-helix motif D0T88_RS11520 PF00730 HhH-GPD superfamily base excision DNA repair protein D0T88_RS11525 PF00854 POT family D0T88_RS11530 PF02798 Glutathione S-transferase, N-terminal domain D0T88_RS11530 PF00043 Glutathione S-transferase, C-terminal domain D0T88_RS11535 PF08543 Phosphomethylpyrimidine kinase D0T88_RS11540 PF01479 S4 domain D0T88_RS11540 PF00579 tRNA synthetases class I (W and Y) D0T88_RS11545 PF01243 Pyridoxamine 5'-phosphate oxidase D0T88_RS11545 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D0T88_RS11550 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme D0T88_RS11555 PF03702 Anhydro-N-acetylmuramic acid kinase D0T88_RS11560 PF05433 Glycine zipper 2TM domain D0T88_RS11565 PF01047 MarR family D0T88_RS11570 PF07869 Protein of unknown function (DUF1656) D0T88_RS11575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0T88_RS11575 PF00529 HlyD membrane-fusion protein of T1SS D0T88_RS11585 PF00080 Copper/zinc superoxide dismutase (SODC) D0T88_RS11590 PF00248 Aldo/keto reductase family D0T88_RS11595 PF06945 Protein of unknown function (DUF1289) D0T88_RS11600 PF00440 Bacterial regulatory proteins, tetR family D0T88_RS11600 PF16925 Tetracyclin repressor-like, C-terminal domain D0T88_RS11605 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D0T88_RS11610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D0T88_RS11615 PF00929 Exonuclease D0T88_RS11620 PF00271 Helicase conserved C-terminal domain D0T88_RS11620 PF00270 DEAD/DEAH box helicase D0T88_RS11620 PF08494 DEAD/H associated D0T88_RS11625 PF00462 Glutaredoxin D0T88_RS11630 PF00877 NlpC/P60 family D0T88_RS11635 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D0T88_RS11635 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D0T88_RS11640 PF07690 Major Facilitator Superfamily D0T88_RS11650 PF00356 Bacterial regulatory proteins, lacI family D0T88_RS11655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS11655 PF03466 LysR substrate binding domain D0T88_RS11660 PF07690 Major Facilitator Superfamily D0T88_RS11670 PF00677 Lumazine binding domain D0T88_RS11675 PF01554 MatE D0T88_RS11680 PF16168 Adhesin of bacterial autotransporter system, probable stalk D0T88_RS11680 PF03212 Pertactin D0T88_RS11695 PF08803 Putative mono-oxygenase ydhR D0T88_RS11700 PF13454 FAD-NAD(P)-binding D0T88_RS11710 PF01292 Prokaryotic cytochrome b561 D0T88_RS11715 PF13247 4Fe-4S dicluster domain D0T88_RS11725 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain D0T88_RS11725 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 D0T88_RS11730 PF12800 4Fe-4S binding domain D0T88_RS11730 PF13247 4Fe-4S dicluster domain D0T88_RS11735 PF10965 Protein of unknown function (DUF2767) D0T88_RS11740 PF02887 Pyruvate kinase, alpha/beta domain D0T88_RS11740 PF00224 Pyruvate kinase, barrel domain D0T88_RS11745 PF04728 Lipoprotein leucine-zipper D0T88_RS11750 PF17969 L,D-transpeptidase C-terminal domain D0T88_RS11750 PF03734 L,D-transpeptidase catalytic domain D0T88_RS11750 PF01476 LysM domain D0T88_RS11755 PF02657 Fe-S metabolism associated domain D0T88_RS11760 PF00266 Aminotransferase class-V D0T88_RS11765 PF01458 Uncharacterized protein family (UPF0051) D0T88_RS11770 PF00005 ABC transporter D0T88_RS11775 PF01458 Uncharacterized protein family (UPF0051) D0T88_RS11780 PF01521 Iron-sulphur cluster biosynthesis D0T88_RS11785 PF15930 Domain of unknown function D0T88_RS11790 PF03061 Thioesterase superfamily D0T88_RS11795 PF02913 FAD linked oxidases, C-terminal domain D0T88_RS11795 PF01565 FAD binding domain D0T88_RS11795 PF13183 4Fe-4S dicluster domain D0T88_RS11800 PF01594 AI-2E family transporter D0T88_RS11810 PF08965 Domain of unknown function (DUF1870) D0T88_RS11815 PF07690 Major Facilitator Superfamily D0T88_RS11820 PF07690 Major Facilitator Superfamily D0T88_RS11825 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D0T88_RS11825 PF08501 Shikimate dehydrogenase substrate binding domain D0T88_RS11830 PF01487 Type I 3-dehydroquinase D0T88_RS11835 PF01144 Coenzyme A transferase D0T88_RS11840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D0T88_RS11840 PF02770 Acyl-CoA dehydrogenase, middle domain D0T88_RS11840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D0T88_RS11845 PF02311 AraC-like ligand binding domain D0T88_RS11845 PF12833 Helix-turn-helix domain D0T88_RS11850 PF01012 Electron transfer flavoprotein domain D0T88_RS11855 PF00766 Electron transfer flavoprotein FAD-binding domain D0T88_RS11855 PF01012 Electron transfer flavoprotein domain D0T88_RS11860 PF01494 FAD binding domain D0T88_RS11870 PF00501 AMP-binding enzyme D0T88_RS11870 PF13193 AMP-binding enzyme C-terminal domain D0T88_RS11875 PF00391 PEP-utilising enzyme, mobile domain D0T88_RS11875 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D0T88_RS11875 PF02896 PEP-utilising enzyme, TIM barrel domain D0T88_RS11880 PF03618 Kinase/pyrophosphorylase D0T88_RS11885 PF00793 DAHP synthetase I family D0T88_RS11890 PF10636 Hemin uptake protein hemP D0T88_RS11895 PF02696 Uncharacterized ACR, YdiU/UPF0061 family D0T88_RS11900 PF00563 EAL domain D0T88_RS11905 PF00877 NlpC/P60 family D0T88_RS11910 PF00005 ABC transporter D0T88_RS11915 PF00255 Glutathione peroxidase D0T88_RS11920 PF01032 FecCD transport family D0T88_RS11925 PF00216 Bacterial DNA-binding protein D0T88_RS11930 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D0T88_RS11930 PF03147 Ferredoxin-fold anticodon binding domain D0T88_RS11930 PF03484 tRNA synthetase B5 domain D0T88_RS11930 PF01588 Putative tRNA binding domain D0T88_RS11930 PF03483 B3/4 domain D0T88_RS11935 PF01409 tRNA synthetases class II core domain (F) D0T88_RS11935 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D0T88_RS11945 PF00453 Ribosomal protein L20 D0T88_RS11950 PF01632 Ribosomal protein L35 D0T88_RS11955 PF05198 Translation initiation factor IF-3, N-terminal domain D0T88_RS11955 PF00707 Translation initiation factor IF-3, C-terminal domain D0T88_RS11960 PF02824 TGS domain D0T88_RS11960 PF03129 Anticodon binding domain D0T88_RS11960 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D0T88_RS11960 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D0T88_RS11975 PF04338 Protein of unknown function, DUF481 D0T88_RS11980 PF00294 pfkB family carbohydrate kinase D0T88_RS11985 PF11080 Endoribonuclease GhoS D0T88_RS11990 PF03881 Fructosamine kinase D0T88_RS11995 PF14002 YniB-like protein D0T88_RS12000 PF13419 Haloacid dehalogenase-like hydrolase D0T88_RS12005 PF04307 LexA-binding, inner membrane-associated putative hydrolase D0T88_RS12010 PF00375 Sodium:dicarboxylate symporter family D0T88_RS12025 PF10729 Cell division activator CedA D0T88_RS12030 PF18011 C-terminal domain found in long catalases D0T88_RS12030 PF00199 Catalase D0T88_RS12030 PF06628 Catalase-related immune-responsive D0T88_RS12035 PF04794 YdjC-like protein D0T88_RS12040 PF02056 Family 4 glycosyl hydrolase D0T88_RS12040 PF11975 Family 4 glycosyl hydrolase C-terminal domain D0T88_RS12045 PF12833 Helix-turn-helix domain D0T88_RS12045 PF07883 Cupin domain D0T88_RS12050 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit D0T88_RS12055 PF02378 Phosphotransferase system, EIIC D0T88_RS12060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0T88_RS12065 PF04355 SmpA / OmlA family D0T88_RS12070 PF02540 NAD synthase D0T88_RS12080 PF05962 HutD D0T88_RS12085 PF07813 LTXXQ motif family protein D0T88_RS12090 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family D0T88_RS12095 PF04996 Succinylarginine dihydrolase D0T88_RS12100 PF00171 Aldehyde dehydrogenase family D0T88_RS12105 PF04958 Arginine N-succinyltransferase beta subunit D0T88_RS12110 PF00202 Aminotransferase class-III D0T88_RS12115 PF03372 Endonuclease/Exonuclease/phosphatase family D0T88_RS12120 PF09335 SNARE associated Golgi protein D0T88_RS12130 PF09335 SNARE associated Golgi protein D0T88_RS12135 PF02627 Carboxymuconolactone decarboxylase family D0T88_RS12140 PF13416 Bacterial extracellular solute-binding protein D0T88_RS12145 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS12150 PF00005 ABC transporter D0T88_RS12155 PF00581 Rhodanese-like domain D0T88_RS12160 PF01066 CDP-alcohol phosphatidyltransferase D0T88_RS12165 PF00293 NUDIX domain D0T88_RS12170 PF07383 Protein of unknown function (DUF1496) D0T88_RS12175 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D0T88_RS12175 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D0T88_RS12180 PF06889 Protein of unknown function (DUF1266) D0T88_RS12185 PF01751 Toprim domain D0T88_RS12185 PF01131 DNA topoisomerase D0T88_RS12190 PF02769 AIR synthase related protein, C-terminal domain D0T88_RS12190 PF00586 AIR synthase related protein, N-terminal domain D0T88_RS12195 PF00881 Nitroreductase family D0T88_RS12200 PF01343 Peptidase family S49 D0T88_RS12205 PF00710 Asparaginase, N-terminal D0T88_RS12205 PF17763 Glutaminase/Asparaginase C-terminal domain D0T88_RS12215 PF07023 Protein of unknown function (DUF1315) D0T88_RS12220 PF01641 SelR domain D0T88_RS12225 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D0T88_RS12225 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D0T88_RS12230 PF01263 Aldose 1-epimerase D0T88_RS12235 PF00248 Aldo/keto reductase family D0T88_RS12240 PF06629 MltA-interacting protein MipA D0T88_RS12245 PF08298 PrkA AAA domain D0T88_RS12245 PF06798 PrkA serine protein kinase C-terminal domain D0T88_RS12250 PF04285 Protein of unknown function (DUF444) D0T88_RS12255 PF17158 Membrane-associated sensor, integral membrane domain D0T88_RS12255 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS12260 PF17155 Gammaproteobacterial periplasmic sensor domain D0T88_RS12260 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS12265 PF04073 Aminoacyl-tRNA editing domain D0T88_RS12275 PF04284 Protein of unknown function (DUF441) D0T88_RS12280 PF12833 Helix-turn-helix domain D0T88_RS12280 PF02311 AraC-like ligand binding domain D0T88_RS12285 PF07690 Major Facilitator Superfamily D0T88_RS12290 PF04343 Protein of unknown function, DUF488 D0T88_RS12295 PF03891 Domain of unknown function (DUF333) D0T88_RS12300 PF13185 GAF domain D0T88_RS12300 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS12315 PF04226 Transglycosylase associated protein D0T88_RS12320 PF07282 Putative transposase DNA-binding domain D0T88_RS12320 PF12323 Helix-turn-helix domain D0T88_RS12320 PF01385 Probable transposase D0T88_RS12325 PF01797 Transposase IS200 like D0T88_RS12330 PF08956 Domain of unknown function (DUF1869) D0T88_RS12335 PF09313 Domain of unknown function (DUF1971) D0T88_RS12340 PF01810 LysE type translocator D0T88_RS12345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS12345 PF03466 LysR substrate binding domain D0T88_RS12350 PF00180 Isocitrate/isopropylmalate dehydrogenase D0T88_RS12355 PF02028 BCCT, betaine/carnitine/choline family transporter D0T88_RS12360 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D0T88_RS12360 PF00355 Rieske [2Fe-2S] domain D0T88_RS12365 PF00970 Oxidoreductase FAD-binding domain D0T88_RS12365 PF00111 2Fe-2S iron-sulfur cluster binding domain D0T88_RS12365 PF00175 Oxidoreductase NAD-binding domain D0T88_RS12370 PF01612 3'-5' exonuclease D0T88_RS12370 PF00570 HRDC domain D0T88_RS12375 PF13193 AMP-binding enzyme C-terminal domain D0T88_RS12375 PF00501 AMP-binding enzyme D0T88_RS12380 PF03843 Outer membrane lipoprotein Slp family D0T88_RS12385 PF00814 Glycoprotease family D0T88_RS12390 PF13307 Helicase C-terminal domain D0T88_RS12390 PF04851 Type III restriction enzyme, res subunit D0T88_RS12395 PF01042 Endoribonuclease L-PSP D0T88_RS12400 PF08986 Domain of unknown function (DUF1889) D0T88_RS12405 PF03701 Uncharacterised protein family (UPF0181) D0T88_RS12410 PF04715 Anthranilate synthase component I, N terminal region D0T88_RS12410 PF00425 chorismate binding enzyme D0T88_RS12415 PF00293 NUDIX domain D0T88_RS12420 PF03315 Serine dehydratase beta chain D0T88_RS12420 PF03313 Serine dehydratase alpha chain D0T88_RS12425 PF12792 CSS motif domain associated with EAL D0T88_RS12425 PF00563 EAL domain D0T88_RS12430 PF03471 Transporter associated domain D0T88_RS12430 PF03741 Integral membrane protein TerC family D0T88_RS12435 PF03610 PTS system fructose IIA component D0T88_RS12435 PF03830 PTS system sorbose subfamily IIB component D0T88_RS12440 PF03609 PTS system sorbose-specific iic component D0T88_RS12445 PF03613 PTS system mannose/fructose/sorbose family IID component D0T88_RS12450 PF06173 Protein of unknown function (DUF986) D0T88_RS12455 PF02659 Putative manganese efflux pump D0T88_RS12460 PF13847 Methyltransferase domain D0T88_RS12465 PF00313 'Cold-shock' DNA-binding domain D0T88_RS12470 PF10736 Protein of unknown function (DUF2627) D0T88_RS12475 PF13974 YebO-like protein D0T88_RS12480 PF13998 MgrB protein D0T88_RS12485 PF13996 YobH-like protein D0T88_RS12490 PF09339 IclR helix-turn-helix domain D0T88_RS12490 PF01614 Bacterial transcriptional regulator D0T88_RS12495 PF07690 Major Facilitator Superfamily D0T88_RS12500 PF01435 Peptidase family M48 D0T88_RS12505 PF00595 PDZ domain D0T88_RS12505 PF03572 Peptidase family S41 D0T88_RS12505 PF17804 Tail specific protease N-terminal domain D0T88_RS12505 PF11818 C-terminal domain of tail specific protease (DUF3340) D0T88_RS12510 PF17516 ProQ C-terminal domain D0T88_RS12510 PF04352 ProQ/FINO family D0T88_RS12515 PF13185 GAF domain D0T88_RS12520 PF04403 Paraquat-inducible protein A D0T88_RS12525 PF02470 MlaD protein D0T88_RS12530 PF01189 16S rRNA methyltransferase RsmB/F D0T88_RS12530 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF D0T88_RS12530 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF D0T88_RS12535 PF07351 Protein of unknown function (DUF1480) D0T88_RS12540 PF07358 Protein of unknown function (DUF1482) D0T88_RS12545 PF00149 Calcineurin-like phosphoesterase D0T88_RS12555 PF02413 Caudovirales tail fibre assembly protein, lambda gpK D0T88_RS12560 PF02413 Caudovirales tail fibre assembly protein, lambda gpK D0T88_RS12685 PF17288 Terminase RNAseH like domain D0T88_RS12685 PF04466 Phage terminase large subunit D0T88_RS12690 PF03592 Terminase small subunit D0T88_RS12690 PF10668 Phage terminase small subunit D0T88_RS12705 PF03245 Bacteriophage Rz lysis protein D0T88_RS12740 PF07102 Protein of unknown function (DUF1364) D0T88_RS12750 PF01848 Hok/gef family D0T88_RS12770 PF07789 Protein of unknown function (DUF1627) D0T88_RS12775 PF01695 IstB-like ATP binding protein D0T88_RS12780 PF07120 Protein of unknown function (DUF1376) D0T88_RS12785 PF06254 Putative bacterial toxin ydaT D0T88_RS12790 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT D0T88_RS12810 PF04181 Rtr1/RPAP2 family D0T88_RS12820 PF12684 PDDEXK-like domain of unknown function (DUF3799) D0T88_RS12820 PF06630 Enterobacterial exodeoxyribonuclease VIII D0T88_RS12845 PF06688 Protein of unknown function (DUF1187) D0T88_RS12850 PF07825 Excisionase-like protein D0T88_RS12855 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain D0T88_RS12855 PF00589 Phage integrase family D0T88_RS12860 PF10709 Protein of unknown function (DUF2511) D0T88_RS12865 PF05425 Copper resistance protein D D0T88_RS12870 PF04234 CopC domain D0T88_RS12875 PF06440 DNA polymerase III, theta subunit D0T88_RS12880 PF00795 Carbon-nitrogen hydrolase D0T88_RS12885 PF00929 Exonuclease D0T88_RS12890 PF00326 Prolyl oligopeptidase family D0T88_RS12890 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain D0T88_RS12895 PF04391 Protein of unknown function (DUF533) D0T88_RS12900 PF13995 YebF-like protein D0T88_RS12905 PF07130 YebG protein D0T88_RS12910 PF02222 ATP-grasp domain D0T88_RS12915 PF01081 KDPG and KHG aldolase D0T88_RS12920 PF00920 Dehydratase family D0T88_RS12925 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D0T88_RS12925 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D0T88_RS12930 PF01418 Helix-turn-helix domain, rpiR family D0T88_RS12930 PF01380 SIS domain D0T88_RS12935 PF02887 Pyruvate kinase, alpha/beta domain D0T88_RS12935 PF00224 Pyruvate kinase, barrel domain D0T88_RS12940 PF03279 Bacterial lipid A biosynthesis acyltransferase D0T88_RS12945 PF01476 LysM domain D0T88_RS12945 PF08525 Opacity-associated protein A N-terminal motif D0T88_RS12945 PF01551 Peptidase family M23 D0T88_RS12950 PF01297 Zinc-uptake complex component A periplasmic D0T88_RS12955 PF00005 ABC transporter D0T88_RS12960 PF00950 ABC 3 transport family D0T88_RS12965 PF05496 Holliday junction DNA helicase RuvB P-loop domain D0T88_RS12965 PF05491 RuvB C-terminal winged helix domain D0T88_RS12965 PF17864 RuvB AAA lid domain D0T88_RS12970 PF07499 RuvA, C-terminal domain D0T88_RS12970 PF01330 RuvA N terminal domain D0T88_RS12980 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family D0T88_RS12985 PF02075 Crossover junction endodeoxyribonuclease RuvC D0T88_RS12990 PF01709 Transcriptional regulator D0T88_RS12995 PF00293 NUDIX domain D0T88_RS13000 PF01336 OB-fold nucleic acid binding domain D0T88_RS13000 PF00152 tRNA synthetases class II (D, K and N) D0T88_RS13000 PF02938 GAD domain D0T88_RS13005 PF00857 Isochorismatase family D0T88_RS13010 PF01904 Protein of unknown function DUF72 D0T88_RS13015 PF01124 MAPEG family D0T88_RS13020 PF13649 Methyltransferase domain D0T88_RS13025 PF08003 Protein of unknown function (DUF1698) D0T88_RS13030 PF01548 Transposase D0T88_RS13030 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS13035 PF01568 Molydopterin dinucleotide binding domain D0T88_RS13035 PF18364 Molybdopterin oxidoreductase N-terminal domain D0T88_RS13035 PF00384 Molybdopterin oxidoreductase D0T88_RS13040 PF03264 NapC/NirT cytochrome c family, N-terminal region D0T88_RS13045 PF03932 CutC family D0T88_RS13050 PF06185 YecM protein D0T88_RS13055 PF03485 Arginyl tRNA synthetase N terminal domain D0T88_RS13055 PF05746 DALR anticodon binding domain D0T88_RS13055 PF00750 tRNA synthetases class I (R) D0T88_RS13060 PF07007 Lysozyme inhibitor LprI D0T88_RS13065 PF06366 Flagellar protein FlhE D0T88_RS13070 PF00771 FHIPEP family D0T88_RS13075 PF01312 FlhB HrpN YscU SpaS Family D0T88_RS13080 PF04344 Chemotaxis phosphatase, CheZ D0T88_RS13085 PF00072 Response regulator receiver domain D0T88_RS13090 PF00072 Response regulator receiver domain D0T88_RS13090 PF01339 CheB methylesterase D0T88_RS13095 PF03705 CheR methyltransferase, all-alpha domain D0T88_RS13095 PF01739 CheR methyltransferase, SAM binding domain D0T88_RS13100 PF02203 Tar ligand binding domain homologue D0T88_RS13100 PF00672 HAMP domain D0T88_RS13100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0T88_RS13105 PF02203 Tar ligand binding domain homologue D0T88_RS13105 PF00672 HAMP domain D0T88_RS13105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0T88_RS13110 PF01584 CheW-like domain D0T88_RS13115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS13115 PF01627 Hpt domain D0T88_RS13115 PF09078 CheY binding D0T88_RS13115 PF01584 CheW-like domain D0T88_RS13115 PF02895 Signal transducing histidine kinase, homodimeric domain D0T88_RS13120 PF13677 Membrane MotB of proton-channel complex MotA/MotB D0T88_RS13120 PF00691 OmpA family D0T88_RS13125 PF01618 MotA/TolQ/ExbB proton channel family D0T88_RS13130 PF05280 Flagellar transcriptional activator (FlhC) D0T88_RS13135 PF05247 Flagellar transcriptional activator (FlhD) D0T88_RS13140 PF00582 Universal stress protein family D0T88_RS13145 PF00982 Glycosyltransferase family 20 D0T88_RS13150 PF02358 Trehalose-phosphatase D0T88_RS13155 PF02653 Branched-chain amino acid transport system / permease component D0T88_RS13160 PF00005 ABC transporter D0T88_RS13165 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D0T88_RS13170 PF00210 Ferritin-like domain D0T88_RS13175 PF10964 Protein of unknown function (DUF2766) D0T88_RS13185 PF13992 YecR-like lipoprotein D0T88_RS13190 PF00210 Ferritin-like domain D0T88_RS13195 PF10678 Protein of unknown function (DUF2492) D0T88_RS13200 PF03222 Tryptophan/tyrosine permease family D0T88_RS13205 PF03695 Uncharacterised protein family (UPF0149) D0T88_RS13205 PF02810 SEC-C motif D0T88_RS13225 PF01066 CDP-alcohol phosphatidyltransferase D0T88_RS13230 PF08459 UvrC Helix-hairpin-helix N-terminal D0T88_RS13230 PF01541 GIY-YIG catalytic domain D0T88_RS13230 PF02151 UvrB/uvrC motif D0T88_RS13235 PF00072 Response regulator receiver domain D0T88_RS13235 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS13245 PF10769 Protein of unknown function (DUF2594) D0T88_RS13250 PF03472 Autoinducer binding domain D0T88_RS13250 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS13255 PF00005 ABC transporter D0T88_RS13260 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS13265 PF00291 Pyridoxal-phosphate dependent enzyme D0T88_RS13270 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0T88_RS13275 PF02899 Phage integrase, N-terminal SAM-like domain D0T88_RS13280 PF04542 Sigma-70 region 2 D0T88_RS13280 PF04539 Sigma-70 region 3 D0T88_RS13280 PF04545 Sigma-70, region 4 D0T88_RS13285 PF00700 Bacterial flagellin C-terminal helical region D0T88_RS13285 PF08884 Flagellin D3 domain D0T88_RS13285 PF00669 Bacterial flagellin N-terminal helical region D0T88_RS13290 PF07196 Flagellin hook IN motif D0T88_RS13290 PF02465 Flagellar hook-associated protein 2 N-terminus D0T88_RS13290 PF07195 Flagellar hook-associated protein 2 C-terminus D0T88_RS13295 PF02561 Flagellar protein FliS D0T88_RS13300 PF05400 Flagellar protein FliT D0T88_RS13305 PF02806 Alpha amylase, C-terminal all-beta domain D0T88_RS13305 PF00128 Alpha amylase, catalytic domain D0T88_RS13310 PF13987 YedD-like protein D0T88_RS13315 PF04143 Sulphur transport D0T88_RS13320 PF01206 Sulfurtransferase TusA D0T88_RS13325 PF02586 SOS response associated peptidase (SRAP) D0T88_RS13330 PF02049 Flagellar hook-basal body complex protein FliE D0T88_RS13335 PF01514 Secretory protein of YscJ/FliF family D0T88_RS13335 PF08345 Flagellar M-ring protein C-terminal D0T88_RS13340 PF01706 FliG C-terminal domain D0T88_RS13340 PF14841 FliG middle domain D0T88_RS13340 PF14842 FliG N-terminal domain D0T88_RS13345 PF02108 Flagellar assembly protein FliH D0T88_RS13350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D0T88_RS13350 PF18269 T3SS EscN ATPase C-terminal domain D0T88_RS13355 PF02050 Flagellar FliJ protein D0T88_RS13360 PF02120 Flagellar hook-length control protein FliK D0T88_RS13365 PF03748 Flagellar basal body-associated protein FliL D0T88_RS13370 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D0T88_RS13370 PF02154 Flagellar motor switch protein FliM D0T88_RS13375 PF16973 Flagellar motor switch protein FliN N-terminal D0T88_RS13375 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D0T88_RS13380 PF04347 Flagellar biosynthesis protein, FliO D0T88_RS13385 PF00813 FliP family D0T88_RS13390 PF01313 Bacterial export proteins, family 3 D0T88_RS13395 PF01311 Bacterial export proteins, family 1 D0T88_RS13400 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS13405 PF10781 Dextransucrase DSRB D0T88_RS13410 PF10733 Protein of unknown function (DUF2525) D0T88_RS13420 PF17151 Periplasmic sensor domain D0T88_RS13420 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS13425 PF09926 Uncharacterized small protein (DUF2158) D0T88_RS13430 PF05661 Protein of unknown function (DUF808) D0T88_RS13435 PF00892 EamA-like transporter family D0T88_RS13440 PF03852 DNA mismatch endonuclease Vsr D0T88_RS13445 PF18284 DNA methylase N-terminal domain D0T88_RS13445 PF00145 C-5 cytosine-specific DNA methylase D0T88_RS13450 PF01966 HD domain D0T88_RS13460 PF00267 Gram-negative porin D0T88_RS13470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS13470 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS13475 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS13475 PF00072 Response regulator receiver domain D0T88_RS13480 PF00576 HIUase/Transthyretin family D0T88_RS13485 PF00174 Oxidoreductase molybdopterin binding domain D0T88_RS13490 PF01794 Ferric reductase like transmembrane component D0T88_RS13495 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment D0T88_RS13500 PF01292 Prokaryotic cytochrome b561 D0T88_RS13510 PF04917 Bacterial shufflon protein, N-terminal constant region D0T88_RS13595 PF00816 H-NS histone family D0T88_RS13625 PF06167 Glucose-regulated metallo-peptidase M90 D0T88_RS13645 PF07690 Major Facilitator Superfamily D0T88_RS13645 PF00083 Sugar (and other) transporter D0T88_RS13650 PF01048 Phosphorylase superfamily D0T88_RS13650 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus D0T88_RS13655 PF01709 Transcriptional regulator D0T88_RS13665 PF01554 MatE D0T88_RS13675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS13675 PF03466 LysR substrate binding domain D0T88_RS13680 PF03466 LysR substrate binding domain D0T88_RS13680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS13690 PF17969 L,D-transpeptidase C-terminal domain D0T88_RS13690 PF03734 L,D-transpeptidase catalytic domain D0T88_RS13695 PF02277 Phosphoribosyltransferase D0T88_RS13700 PF02654 Cobalamin-5-phosphate synthase D0T88_RS13705 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase D0T88_RS13710 PF10662 Ethanolamine utilisation - propanediol utilisation D0T88_RS13715 PF04363 Protein of unknown function (DUF496) D0T88_RS13720 PF04632 Fusaric acid resistance protein family D0T88_RS13725 PF06445 GyrI-like small molecule binding domain D0T88_RS13730 PF00768 D-alanyl-D-alanine carboxypeptidase D0T88_RS13730 PF07943 Penicillin-binding protein 5, C-terminal domain D0T88_RS13735 PF08411 Exonuclease C-terminal D0T88_RS13735 PF00929 Exonuclease D0T88_RS13740 PF01206 Sulfurtransferase TusA D0T88_RS13745 PF04143 Sulphur transport D0T88_RS13750 PF13520 Amino acid permease D0T88_RS13760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS13760 PF03466 LysR substrate binding domain D0T88_RS13765 PF01370 NAD dependent epimerase/dehydratase family D0T88_RS13770 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system D0T88_RS13775 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system D0T88_RS13785 PF01634 ATP phosphoribosyltransferase D0T88_RS13785 PF08029 HisG, C-terminal domain D0T88_RS13790 PF00815 Histidinol dehydrogenase D0T88_RS13795 PF00155 Aminotransferase class I and II D0T88_RS13800 PF00475 Imidazoleglycerol-phosphate dehydratase D0T88_RS13800 PF08645 Polynucleotide kinase 3 phosphatase D0T88_RS13805 PF00117 Glutamine amidotransferase class-I D0T88_RS13810 PF00977 Histidine biosynthesis protein D0T88_RS13815 PF00977 Histidine biosynthesis protein D0T88_RS13820 PF01502 Phosphoribosyl-AMP cyclohydrolase D0T88_RS13820 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase D0T88_RS13830 PF13439 Glycosyltransferase Family 4 D0T88_RS13830 PF00534 Glycosyl transferases group 1 D0T88_RS13840 PF08241 Methyltransferase domain D0T88_RS13845 PF14524 Wzt C-terminal domain D0T88_RS13845 PF00005 ABC transporter D0T88_RS13855 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D0T88_RS13855 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D0T88_RS13855 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D0T88_RS13855 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D0T88_RS13860 PF01050 Mannose-6-phosphate isomerase D0T88_RS13860 PF00483 Nucleotidyl transferase D0T88_RS13870 PF02706 Chain length determinant protein D0T88_RS13875 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D0T88_RS13875 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D0T88_RS13875 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D0T88_RS13880 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D0T88_RS13880 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D0T88_RS13885 PF16363 GDP-mannose 4,6 dehydratase D0T88_RS13895 PF00535 Glycosyl transferase family 2 D0T88_RS13895 PF01501 Glycosyl transferase family 8 D0T88_RS13915 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D0T88_RS13920 PF00483 Nucleotidyl transferase D0T88_RS13925 PF04321 RmlD substrate binding domain D0T88_RS13930 PF16363 GDP-mannose 4,6 dehydratase D0T88_RS13935 PF00483 Nucleotidyl transferase D0T88_RS13945 PF00534 Glycosyl transferases group 1 D0T88_RS13945 PF13439 Glycosyltransferase Family 4 D0T88_RS13950 PF04230 Polysaccharide pyruvyl transferase D0T88_RS13960 PF02397 Bacterial sugar transferase D0T88_RS13965 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D0T88_RS13965 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D0T88_RS13965 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D0T88_RS13965 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D0T88_RS13970 PF01050 Mannose-6-phosphate isomerase D0T88_RS13970 PF00483 Nucleotidyl transferase D0T88_RS13975 PF00534 Glycosyl transferases group 1 D0T88_RS13975 PF13579 Glycosyl transferase 4-like domain D0T88_RS13980 PF00293 NUDIX domain D0T88_RS13985 PF01370 NAD dependent epimerase/dehydratase family D0T88_RS13990 PF16363 GDP-mannose 4,6 dehydratase D0T88_RS13995 PF00132 Bacterial transferase hexapeptide (six repeats) D0T88_RS14000 PF00535 Glycosyl transferase family 2 D0T88_RS14010 PF00534 Glycosyl transferases group 1 D0T88_RS14010 PF13439 Glycosyltransferase Family 4 D0T88_RS14015 PF00132 Bacterial transferase hexapeptide (six repeats) D0T88_RS14020 PF00535 Glycosyl transferase family 2 D0T88_RS14025 PF02706 Chain length determinant protein D0T88_RS14025 PF13807 G-rich domain on putative tyrosine kinase D0T88_RS14025 PF13614 AAA domain D0T88_RS14030 PF01451 Low molecular weight phosphotyrosine protein phosphatase D0T88_RS14035 PF02563 Polysaccharide biosynthesis/export protein D0T88_RS14035 PF10531 SLBB domain D0T88_RS14035 PF18412 Outer-membrane lipoprotein Wza C-terminal domain D0T88_RS14045 PF03741 Integral membrane protein TerC family D0T88_RS14045 PF03471 Transporter associated domain D0T88_RS14045 PF00571 CBS domain D0T88_RS14050 PF05170 AsmA family D0T88_RS14055 PF00692 dUTPase D0T88_RS14060 PF00485 Phosphoribulokinase / Uridine kinase family D0T88_RS14065 PF08447 PAS fold D0T88_RS14065 PF00563 EAL domain D0T88_RS14065 PF05231 MASE1 D0T88_RS14065 PF08448 PAS fold D0T88_RS14065 PF13426 PAS domain D0T88_RS14065 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS14070 PF06029 AlkA N-terminal domain D0T88_RS14070 PF00730 HhH-GPD superfamily base excision DNA repair protein D0T88_RS14075 PF00012 Hsp70 protein D0T88_RS14090 PF00092 von Willebrand factor type A domain D0T88_RS14110 PF13533 Biotin-lipoyl like D0T88_RS14115 PF00873 AcrB/AcrD/AcrF family D0T88_RS14120 PF00873 AcrB/AcrD/AcrF family D0T88_RS14125 PF07690 Major Facilitator Superfamily D0T88_RS14130 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS14130 PF00672 HAMP domain D0T88_RS14130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS14135 PF00072 Response regulator receiver domain D0T88_RS14135 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS14140 PF07411 Domain of unknown function (DUF1508) D0T88_RS14145 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D0T88_RS14155 PF16325 Peptidase family U32 C-terminal domain D0T88_RS14155 PF01136 Peptidase family U32 D0T88_RS14165 PF00781 Diacylglycerol kinase catalytic domain D0T88_RS14170 PF08220 DeoR-like helix-turn-helix domain D0T88_RS14175 PF08240 Alcohol dehydrogenase GroES-like domain D0T88_RS14175 PF00107 Zinc-binding dehydrogenase D0T88_RS14180 PF03611 PTS system sugar-specific permease component D0T88_RS14185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0T88_RS14190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0T88_RS14195 PF08013 Tagatose 6 phosphate kinase D0T88_RS14200 PF01116 Fructose-bisphosphate aldolase class-II D0T88_RS14205 PF01791 DeoC/LacD family aldolase D0T88_RS14210 PF03825 Nucleoside H+ symporter D0T88_RS14215 PF03747 ADP-ribosylglycohydrolase D0T88_RS14220 PF00294 pfkB family carbohydrate kinase D0T88_RS14225 PF07702 UTRA domain D0T88_RS14225 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS14230 PF01183 Glycosyl hydrolases family 25 D0T88_RS14235 PF08543 Phosphomethylpyrimidine kinase D0T88_RS14240 PF02110 Hydroxyethylthiazole kinase family D0T88_RS14245 PF02583 Metal-sensitive transcriptional repressor D0T88_RS14250 PF03824 High-affinity nickel-transport protein D0T88_RS14255 PF11776 Nickel/cobalt transporter regulator D0T88_RS14260 PF00419 Fimbrial protein D0T88_RS14265 PF13954 PapC N-terminal domain D0T88_RS14265 PF00577 Outer membrane usher protein D0T88_RS14265 PF13953 PapC C-terminal domain D0T88_RS14270 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D0T88_RS14270 PF02753 Pili assembly chaperone PapD, C-terminal domain D0T88_RS14275 PF00419 Fimbrial protein D0T88_RS14280 PF10836 Protein of unknown function (DUF2574) D0T88_RS14285 PF10609 NUBPL iron-transfer P-loop NTPase D0T88_RS14290 PF09334 tRNA synthetases class I (M) D0T88_RS14290 PF01588 Putative tRNA binding domain D0T88_RS14295 PF13569 Domain of unknown function (DUF4132) D0T88_RS14300 PF13569 Domain of unknown function (DUF4132) D0T88_RS14310 PF07728 AAA domain (dynein-related subfamily) D0T88_RS14320 PF05762 VWA domain containing CoxE-like protein D0T88_RS14325 PF04434 SWIM zinc finger D0T88_RS14330 PF06998 Protein of unknown function (DUF1307) D0T88_RS14335 PF07308 Protein of unknown function (DUF1456) D0T88_RS14340 PF04397 LytTr DNA-binding domain D0T88_RS14340 PF00072 Response regulator receiver domain D0T88_RS14345 PF06580 Histidine kinase D0T88_RS14345 PF07694 5TMR of 5TMR-LYT D0T88_RS14350 PF13411 MerR HTH family regulatory protein D0T88_RS14360 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS14365 PF00005 ABC transporter D0T88_RS14370 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS14375 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D0T88_RS14380 PF00933 Glycosyl hydrolase family 3 N terminal domain D0T88_RS14380 PF14310 Fibronectin type III-like domain D0T88_RS14380 PF01915 Glycosyl hydrolase family 3 C-terminal domain D0T88_RS14385 PF01565 FAD binding domain D0T88_RS14385 PF09330 D-lactate dehydrogenase, membrane binding D0T88_RS14390 PF00768 D-alanyl-D-alanine carboxypeptidase D0T88_RS14395 PF04893 Yip1 domain D0T88_RS14400 PF09335 SNARE associated Golgi protein D0T88_RS14410 PF02321 Outer membrane efflux protein D0T88_RS14420 PF01207 Dihydrouridine synthase (Dus) D0T88_RS14425 PF03788 LrgA family D0T88_RS14430 PF04172 LrgB-like family D0T88_RS14435 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region D0T88_RS14435 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D0T88_RS14440 PF02698 DUF218 domain D0T88_RS14445 PF10808 Protein of unknown function (DUF2542) D0T88_RS14450 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D0T88_RS14450 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS14455 PF01180 Dihydroorotate dehydrogenase D0T88_RS14460 PF02653 Branched-chain amino acid transport system / permease component D0T88_RS14465 PF00005 ABC transporter D0T88_RS14470 PF13407 Periplasmic binding protein domain D0T88_RS14475 PF00356 Bacterial regulatory proteins, lacI family D0T88_RS14480 PF04235 Protein of unknown function (DUF418) D0T88_RS14485 PF01227 GTP cyclohydrolase I D0T88_RS14490 PF00756 Putative esterase D0T88_RS14495 PF00593 TonB dependent receptor D0T88_RS14495 PF07715 TonB-dependent Receptor Plug Domain D0T88_RS14500 PF00324 Amino acid permease D0T88_RS14505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS14505 PF03466 LysR substrate binding domain D0T88_RS14510 PF03601 Conserved hypothetical protein 698 D0T88_RS14515 PF01261 Xylose isomerase-like TIM barrel D0T88_RS14520 PF00294 pfkB family carbohydrate kinase D0T88_RS14525 PF01773 Na+ dependent nucleoside transporter N-terminus D0T88_RS14525 PF07662 Na+ dependent nucleoside transporter C-terminus D0T88_RS14530 PF01156 Inosine-uridine preferring nucleoside hydrolase D0T88_RS14535 PF00027 Cyclic nucleotide-binding domain D0T88_RS14540 PF07662 Na+ dependent nucleoside transporter C-terminus D0T88_RS14540 PF01773 Na+ dependent nucleoside transporter N-terminus D0T88_RS14545 PF04227 Indigoidine synthase A like protein D0T88_RS14550 PF00294 pfkB family carbohydrate kinase D0T88_RS14555 PF02378 Phosphotransferase system, EIIC D0T88_RS14555 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0T88_RS14560 PF00294 pfkB family carbohydrate kinase D0T88_RS14565 PF00381 PTS HPr component phosphorylation site D0T88_RS14565 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0T88_RS14570 PF07690 Major Facilitator Superfamily D0T88_RS14575 PF03692 Putative zinc- or iron-chelating domain D0T88_RS14580 PF01132 Elongation factor P (EF-P) OB domain D0T88_RS14580 PF08207 Elongation factor P (EF-P) KOW-like domain D0T88_RS14580 PF09285 Elongation factor P, C-terminal D0T88_RS14585 PF01232 Mannitol dehydrogenase Rossmann domain D0T88_RS14585 PF08125 Mannitol dehydrogenase C-terminal domain D0T88_RS14590 PF07683 Cobalamin synthesis protein cobW C-terminal domain D0T88_RS14590 PF02492 CobW/HypB/UreG, nucleotide-binding domain D0T88_RS14595 PF01569 PAP2 superfamily D0T88_RS14600 PF00877 NlpC/P60 family D0T88_RS14605 PF12792 CSS motif domain associated with EAL D0T88_RS14605 PF00563 EAL domain D0T88_RS14610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0T88_RS14615 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS14620 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS14620 PF12911 N-terminal TM domain of oligopeptide transport permease C D0T88_RS14625 PF00005 ABC transporter D0T88_RS14625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0T88_RS14630 PF13989 YejG-like protein D0T88_RS14635 PF07690 Major Facilitator Superfamily D0T88_RS14640 PF00849 RNA pseudouridylate synthase D0T88_RS14640 PF01479 S4 domain D0T88_RS14645 PF00271 Helicase conserved C-terminal domain D0T88_RS14645 PF04851 Type III restriction enzyme, res subunit D0T88_RS14650 PF01386 Ribosomal L25p family D0T88_RS14655 PF04245 37-kD nucleoid-associated bacterial protein D0T88_RS14660 PF07208 Protein of unknown function (DUF1414) D0T88_RS14665 PF11893 Domain of unknown function (DUF3413) D0T88_RS14665 PF00884 Sulfatase D0T88_RS14680 PF00072 Response regulator receiver domain D0T88_RS14680 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS14685 PF03918 Cytochrome C biogenesis protein D0T88_RS14690 PF08534 Redoxin D0T88_RS14695 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D0T88_RS14695 PF01578 Cytochrome C assembly protein D0T88_RS14700 PF03100 CcmE D0T88_RS14705 PF04995 Heme exporter protein D (CcmD) D0T88_RS14710 PF01578 Cytochrome C assembly protein D0T88_RS14715 PF03379 CcmB protein D0T88_RS14720 PF00005 ABC transporter D0T88_RS14725 PF03264 NapC/NirT cytochrome c family, N-terminal region D0T88_RS14730 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) D0T88_RS14735 PF13237 4Fe-4S dicluster domain D0T88_RS14735 PF12801 4Fe-4S binding domain D0T88_RS14740 PF12838 4Fe-4S dicluster domain D0T88_RS14740 PF12800 4Fe-4S binding domain D0T88_RS14745 PF01568 Molydopterin dinucleotide binding domain D0T88_RS14745 PF00384 Molybdopterin oxidoreductase D0T88_RS14745 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D0T88_RS14750 PF03927 NapD protein D0T88_RS14755 PF13187 4Fe-4S dicluster domain D0T88_RS14755 PF00037 4Fe-4S binding domain D0T88_RS14755 PF12800 4Fe-4S binding domain D0T88_RS14765 PF03974 Ecotin D0T88_RS14770 PF06039 Malate:quinone oxidoreductase (Mqo) D0T88_RS14775 PF00005 ABC transporter D0T88_RS14780 PF13532 2OG-Fe(II) oxygenase superfamily D0T88_RS14785 PF02805 Metal binding domain of Ada D0T88_RS14785 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D0T88_RS14785 PF12833 Helix-turn-helix domain D0T88_RS14785 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D0T88_RS14790 PF02424 ApbE family D0T88_RS14795 PF00267 Gram-negative porin D0T88_RS14800 PF16359 RcsD-ABL domain D0T88_RS14800 PF01627 Hpt domain D0T88_RS14800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS14805 PF00072 Response regulator receiver domain D0T88_RS14805 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS14810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS14810 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS14810 PF00072 Response regulator receiver domain D0T88_RS14810 PF09456 RcsC Alpha-Beta-Loop (ABL) D0T88_RS14815 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) D0T88_RS14820 PF10062 Predicted secreted protein (DUF2300) D0T88_RS14820 PF08486 Stage II sporulation protein D0T88_RS14825 PF07703 Alpha-2-macroglobulin bait region domain D0T88_RS14825 PF00207 Alpha-2-macroglobulin family D0T88_RS14825 PF01835 MG2 domain D0T88_RS14830 PF06672 Protein of unknown function (DUF1175) D0T88_RS14835 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) D0T88_RS14840 PF03989 DNA gyrase C-terminal domain, beta-propeller D0T88_RS14840 PF00521 DNA gyrase/topoisomerase IV, subunit A D0T88_RS14850 PF03797 Autotransporter beta-domain D0T88_RS14850 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat D0T88_RS14850 PF12951 Passenger-associated-transport-repeat D0T88_RS14855 PF03477 ATP cone domain D0T88_RS14855 PF00317 Ribonucleotide reductase, all-alpha domain D0T88_RS14855 PF02867 Ribonucleotide reductase, barrel domain D0T88_RS14860 PF00268 Ribonucleotide reductase, small chain D0T88_RS14865 PF00111 2Fe-2S iron-sulfur cluster binding domain D0T88_RS14880 PF03009 Glycerophosphoryl diester phosphodiesterase family D0T88_RS14885 PF07690 Major Facilitator Superfamily D0T88_RS14890 PF04324 BFD-like [2Fe-2S] binding domain D0T88_RS14890 PF01266 FAD dependent oxidoreductase D0T88_RS14895 PF00890 FAD binding domain D0T88_RS14900 PF13183 4Fe-4S dicluster domain D0T88_RS14900 PF02754 Cysteine-rich domain D0T88_RS14905 PF04754 Putative transposase, YhgA-like D0T88_RS14910 PF03328 HpcH/HpaI aldolase/citrate lyase family D0T88_RS14915 PF00994 Probable molybdopterin binding domain D0T88_RS14920 PF07437 YfaZ precursor D0T88_RS14925 PF00293 NUDIX domain D0T88_RS14930 PF00300 Histidine phosphatase superfamily (branch 1) D0T88_RS14935 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D0T88_RS14940 PF00535 Glycosyl transferase family 2 D0T88_RS14945 PF02911 Formyl transferase, C-terminal domain D0T88_RS14945 PF01370 NAD dependent epimerase/dehydratase family D0T88_RS14945 PF00551 Formyl transferase D0T88_RS14950 PF01522 Polysaccharide deacetylase D0T88_RS14955 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase D0T88_RS14960 PF00892 EamA-like transporter family D0T88_RS14975 PF00501 AMP-binding enzyme D0T88_RS14975 PF13193 AMP-binding enzyme C-terminal domain D0T88_RS14980 PF13378 Enolase C-terminal domain-like D0T88_RS14985 PF00378 Enoyl-CoA hydratase/isomerase D0T88_RS14990 PF12697 Alpha/beta hydrolase family D0T88_RS14995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D0T88_RS14995 PF16582 Middle domain of thiamine pyrophosphate D0T88_RS14995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D0T88_RS15000 PF00425 chorismate binding enzyme D0T88_RS15005 PF05957 Bacterial protein of unknown function (DUF883) D0T88_RS15010 PF13673 Acetyltransferase (GNAT) domain D0T88_RS15015 PF12706 Beta-lactamase superfamily domain D0T88_RS15020 PF02902 Ulp1 protease family, C-terminal catalytic domain D0T88_RS15030 PF08974 Domain of unknown function (DUF1877) D0T88_RS15035 PF00361 Proton-conducting membrane transporter D0T88_RS15040 PF00361 Proton-conducting membrane transporter D0T88_RS15045 PF00361 Proton-conducting membrane transporter D0T88_RS15045 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D0T88_RS15050 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D0T88_RS15055 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 D0T88_RS15060 PF12838 4Fe-4S dicluster domain D0T88_RS15065 PF00146 NADH dehydrogenase D0T88_RS15070 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D0T88_RS15070 PF01568 Molydopterin dinucleotide binding domain D0T88_RS15070 PF00384 Molybdopterin oxidoreductase D0T88_RS15070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D0T88_RS15075 PF10531 SLBB domain D0T88_RS15075 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D0T88_RS15075 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D0T88_RS15085 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D0T88_RS15085 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D0T88_RS15090 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D0T88_RS15095 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 D0T88_RS15100 PF03466 LysR substrate binding domain D0T88_RS15100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS15105 PF00155 Aminotransferase class I and II D0T88_RS15115 PF02080 TrkA-C domain D0T88_RS15115 PF03600 Citrate transporter D0T88_RS15120 PF13419 Haloacid dehalogenase-like hydrolase D0T88_RS15125 PF03887 YfbU domain D0T88_RS15130 PF04217 Protein of unknown function, DUF412 D0T88_RS15135 PF00871 Acetokinase family D0T88_RS15140 PF01515 Phosphate acetyl/butaryl transferase D0T88_RS15140 PF07085 DRTGG domain D0T88_RS15145 PF03606 C4-dicarboxylate anaerobic carrier D0T88_RS15150 PF00293 NUDIX domain D0T88_RS15155 PF12850 Calcineurin-like phosphoesterase superfamily domain D0T88_RS15160 PF02798 Glutathione S-transferase, N-terminal domain D0T88_RS15160 PF14834 Glutathione S-transferase, C-terminal domain D0T88_RS15165 PF00043 Glutathione S-transferase, C-terminal domain D0T88_RS15165 PF02798 Glutathione S-transferase, N-terminal domain D0T88_RS15170 PF02152 Dihydroneopterin aldolase D0T88_RS15175 PF08338 Domain of unknown function (DUF1731) D0T88_RS15175 PF01370 NAD dependent epimerase/dehydratase family D0T88_RS15180 PF04754 Putative transposase, YhgA-like D0T88_RS15185 PF00005 ABC transporter D0T88_RS15190 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS15195 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS15200 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0T88_RS15205 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0T88_RS15210 PF02441 Flavoprotein D0T88_RS15215 PF00156 Phosphoribosyl transferase domain D0T88_RS15220 PF02674 Colicin V production protein D0T88_RS15225 PF05036 Sporulation related domain D0T88_RS15230 PF08245 Mur ligase middle domain D0T88_RS15230 PF02875 Mur ligase family, glutamate ligase domain D0T88_RS15235 PF17848 Acetyl-coA carboxylase zinc finger domain D0T88_RS15235 PF01039 Carboxyl transferase domain D0T88_RS15240 PF09335 SNARE associated Golgi protein D0T88_RS15245 PF01416 tRNA pseudouridine synthase D0T88_RS15250 PF01118 Semialdehyde dehydrogenase, NAD binding domain D0T88_RS15250 PF02774 Semialdehyde dehydrogenase, dimerisation domain D0T88_RS15255 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D0T88_RS15255 PF11890 Domain of unknown function (DUF3410) D0T88_RS15255 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D0T88_RS15260 PF00589 Phage integrase family D0T88_RS15260 PF02899 Phage integrase, N-terminal SAM-like domain D0T88_RS15325 PF05840 Bacteriophage replication gene A protein (GPA) D0T88_RS15330 PF06406 StbA protein D0T88_RS15340 PF07724 AAA domain (Cdc48 subfamily) D0T88_RS15340 PF10431 C-terminal, D2-small domain, of ClpB protein D0T88_RS15340 PF06689 ClpX C4-type zinc finger D0T88_RS15435 PF08400 Prophage tail fibre N-terminal D0T88_RS15435 PF03335 Phage tail fibre repeat D0T88_RS15435 PF07484 Phage Tail Collar Domain D0T88_RS15440 PF02413 Caudovirales tail fibre assembly protein, lambda gpK D0T88_RS15455 PF02796 Helix-turn-helix domain of resolvase D0T88_RS15455 PF00239 Resolvase, N terminal domain D0T88_RS15485 PF04984 Phage tail sheath protein subtilisin-like domain D0T88_RS15485 PF17482 Phage tail sheath C-terminal domain D0T88_RS15520 PF07690 Major Facilitator Superfamily D0T88_RS15525 PF00109 Beta-ketoacyl synthase, N-terminal domain D0T88_RS15525 PF02801 Beta-ketoacyl synthase, C-terminal domain D0T88_RS15530 PF01266 FAD dependent oxidoreductase D0T88_RS15530 PF05430 S-adenosyl-L-methionine-dependent methyltransferase D0T88_RS15535 PF01548 Transposase D0T88_RS15535 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS15540 PF08891 YfcL protein D0T88_RS15545 PF04315 Elongation factor P hydroxylase D0T88_RS15550 PF01925 Sulfite exporter TauE/SafE D0T88_RS15555 PF03411 Penicillin-insensitive murein endopeptidase D0T88_RS15560 PF01264 Chorismate synthase D0T88_RS15565 PF05175 Methyltransferase small domain D0T88_RS15570 PF01713 Smr domain D0T88_RS15575 PF11245 Protein of unknown function (DUF2544) D0T88_RS15580 PF00419 Fimbrial protein D0T88_RS15585 PF00419 Fimbrial protein D0T88_RS15590 PF00419 Fimbrial protein D0T88_RS15595 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D0T88_RS15595 PF02753 Pili assembly chaperone PapD, C-terminal domain D0T88_RS15600 PF00577 Outer membrane usher protein D0T88_RS15600 PF13954 PapC N-terminal domain D0T88_RS15600 PF13953 PapC C-terminal domain D0T88_RS15605 PF00419 Fimbrial protein D0T88_RS15610 PF00300 Histidine phosphatase superfamily (branch 1) D0T88_RS15615 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D0T88_RS15615 PF00378 Enoyl-CoA hydratase/isomerase D0T88_RS15615 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D0T88_RS15620 PF00108 Thiolase, N-terminal domain D0T88_RS15620 PF02803 Thiolase, C-terminal domain D0T88_RS15625 PF04175 Protein of unknown function (DUF406) D0T88_RS15630 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D0T88_RS15640 PF04333 MlaA lipoprotein D0T88_RS15645 PF01226 Formate/nitrite transporter D0T88_RS15655 PF00589 Phage integrase family D0T88_RS15655 PF14659 Phage integrase, N-terminal SAM-like domain D0T88_RS15655 PF13356 Arm DNA-binding domain D0T88_RS15690 PF01047 MarR family D0T88_RS15700 PF04962 KduI/IolB family D0T88_RS15705 PF01261 Xylose isomerase-like TIM barrel D0T88_RS15710 PF00294 pfkB family carbohydrate kinase D0T88_RS15715 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D0T88_RS15715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D0T88_RS15720 PF02653 Branched-chain amino acid transport system / permease component D0T88_RS15725 PF00005 ABC transporter D0T88_RS15730 PF13407 Periplasmic binding protein domain D0T88_RS15735 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D0T88_RS15735 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D0T88_RS15740 PF00205 Thiamine pyrophosphate enzyme, central domain D0T88_RS15740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D0T88_RS15740 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D0T88_RS15745 PF00171 Aldehyde dehydrogenase family D0T88_RS15770 PF00425 chorismate binding enzyme D0T88_RS15775 PF07690 Major Facilitator Superfamily D0T88_RS15780 PF00005 ABC transporter D0T88_RS15780 PF00664 ABC transporter transmembrane region D0T88_RS15785 PF04954 Siderophore-interacting protein D0T88_RS15785 PF00664 ABC transporter transmembrane region D0T88_RS15785 PF00005 ABC transporter D0T88_RS15785 PF08021 Siderophore-interacting FAD-binding domain D0T88_RS15795 PF08242 Methyltransferase domain D0T88_RS15795 PF00501 AMP-binding enzyme D0T88_RS15795 PF00668 Condensation domain D0T88_RS15795 PF00550 Phosphopantetheine attachment site D0T88_RS15800 PF00668 Condensation domain D0T88_RS15800 PF00698 Acyl transferase domain D0T88_RS15800 PF00550 Phosphopantetheine attachment site D0T88_RS15800 PF02801 Beta-ketoacyl synthase, C-terminal domain D0T88_RS15800 PF00109 Beta-ketoacyl synthase, N-terminal domain D0T88_RS15800 PF16197 Ketoacyl-synthetase C-terminal extension D0T88_RS15810 PF00975 Thioesterase domain D0T88_RS15815 PF00501 AMP-binding enzyme D0T88_RS15815 PF13193 AMP-binding enzyme C-terminal domain D0T88_RS15820 PF00593 TonB dependent receptor D0T88_RS15820 PF07715 TonB-dependent Receptor Plug Domain D0T88_RS15825 PF07715 TonB-dependent Receptor Plug Domain D0T88_RS15825 PF00593 TonB dependent receptor D0T88_RS15835 PF08242 Methyltransferase domain D0T88_RS15850 PF02195 ParB-like nuclease domain D0T88_RS15855 PF11922 Domain of unknown function (DUF3440) D0T88_RS15855 PF01507 Phosphoadenosine phosphosulfate reductase family D0T88_RS15870 PF06291 Bor protein D0T88_RS15900 PF06722 Protein of unknown function (DUF1205) D0T88_RS15905 PF00005 ABC transporter D0T88_RS15905 PF00664 ABC transporter transmembrane region D0T88_RS15910 PF11806 Domain of unknown function (DUF3327) D0T88_RS15910 PF00756 Putative esterase D0T88_RS15915 PF00756 Putative esterase D0T88_RS15920 PF07715 TonB-dependent Receptor Plug Domain D0T88_RS15920 PF00593 TonB dependent receptor D0T88_RS15925 PF00793 DAHP synthetase I family D0T88_RS15945 PF05717 IS66 Orf2 like protein D0T88_RS15950 PF13005 zinc-finger binding domain of transposase IS66 D0T88_RS15950 PF03050 Transposase IS66 family D0T88_RS15950 PF13007 Transposase C of IS166 homeodomain D0T88_RS15950 PF13817 IS66 C-terminal element D0T88_RS15965 PF00561 alpha/beta hydrolase fold D0T88_RS15970 PF01278 Omptin family D0T88_RS15975 PF02585 GlcNAc-PI de-N-acetylase D0T88_RS15980 PF00535 Glycosyl transferase family 2 D0T88_RS15985 PF00132 Bacterial transferase hexapeptide (six repeats) D0T88_RS16010 PF03050 Transposase IS66 family D0T88_RS16010 PF13817 IS66 C-terminal element D0T88_RS16010 PF13007 Transposase C of IS166 homeodomain D0T88_RS16010 PF13005 zinc-finger binding domain of transposase IS66 D0T88_RS16015 PF05717 IS66 Orf2 like protein D0T88_RS16025 PF05717 IS66 Orf2 like protein D0T88_RS16030 PF13007 Transposase C of IS166 homeodomain D0T88_RS16030 PF13005 zinc-finger binding domain of transposase IS66 D0T88_RS16030 PF03050 Transposase IS66 family D0T88_RS16030 PF13817 IS66 C-terminal element D0T88_RS16045 PF03797 Autotransporter beta-domain D0T88_RS16045 PF16168 Adhesin of bacterial autotransporter system, probable stalk D0T88_RS16045 PF13018 Extended Signal Peptide of Type V secretion system D0T88_RS16050 PF00350 Dynamin family D0T88_RS16055 PF13990 YjcZ-like protein D0T88_RS16065 PF06067 Domain of unknown function (DUF932) D0T88_RS16070 PF03230 Antirestriction protein D0T88_RS16075 PF04002 RadC-like JAB domain D0T88_RS16080 PF06174 Protein of unknown function (DUF987) D0T88_RS16085 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A D0T88_RS16090 PF01306 LacY proton/sugar symporter D0T88_RS16095 PF00294 pfkB family carbohydrate kinase D0T88_RS16100 PF00251 Glycosyl hydrolases family 32 N-terminal domain D0T88_RS16100 PF08244 Glycosyl hydrolases family 32 C terminal D0T88_RS16105 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D0T88_RS16105 PF00356 Bacterial regulatory proteins, lacI family D0T88_RS16115 PF00291 Pyridoxal-phosphate dependent enzyme D0T88_RS16120 PF07690 Major Facilitator Superfamily D0T88_RS16125 PF00529 HlyD membrane-fusion protein of T1SS D0T88_RS16125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0T88_RS16130 PF00072 Response regulator receiver domain D0T88_RS16130 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS16135 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS16135 PF00072 Response regulator receiver domain D0T88_RS16135 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0T88_RS16135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS16135 PF01627 Hpt domain D0T88_RS16140 PF02515 CoA-transferase family III D0T88_RS16145 PF03547 Membrane transport protein D0T88_RS16150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D0T88_RS16150 PF00205 Thiamine pyrophosphate enzyme, central domain D0T88_RS16150 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D0T88_RS16155 PF02515 CoA-transferase family III D0T88_RS16160 PF10938 YfdX protein D0T88_RS16170 PF10810 Protein of unknown function (DUF2545) D0T88_RS16175 PF03279 Bacterial lipid A biosynthesis acyltransferase D0T88_RS16185 PF00155 Aminotransferase class I and II D0T88_RS16190 PF06580 Histidine kinase D0T88_RS16190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS16190 PF07694 5TMR of 5TMR-LYT D0T88_RS16195 PF00072 Response regulator receiver domain D0T88_RS16195 PF04397 LytTr DNA-binding domain D0T88_RS16200 PF12833 Helix-turn-helix domain D0T88_RS16205 PF00381 PTS HPr component phosphorylation site D0T88_RS16205 PF05524 PEP-utilising enzyme, N-terminal D0T88_RS16205 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0T88_RS16205 PF02896 PEP-utilising enzyme, TIM barrel domain D0T88_RS16205 PF00391 PEP-utilising enzyme, mobile domain D0T88_RS16210 PF05343 M42 glutamyl aminopeptidase D0T88_RS16215 PF00557 Metallopeptidase family M24 D0T88_RS16215 PF01321 Creatinase/Prolidase N-terminal domain D0T88_RS16220 PF02378 Phosphotransferase system, EIIC D0T88_RS16225 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0T88_RS16230 PF02685 Glucokinase D0T88_RS16235 PF00654 Voltage gated chloride channel D0T88_RS16240 PF10697 Protein of unknown function (DUF2502) D0T88_RS16245 PF01566 Natural resistance-associated macrophage protein D0T88_RS16250 PF01773 Na+ dependent nucleoside transporter N-terminus D0T88_RS16250 PF07670 Nucleoside recognition D0T88_RS16250 PF07662 Na+ dependent nucleoside transporter C-terminus D0T88_RS16255 PF05231 MASE1 D0T88_RS16255 PF00563 EAL domain D0T88_RS16270 PF07037 Putative transcription regulator (DUF1323) D0T88_RS16275 PF07037 Putative transcription regulator (DUF1323) D0T88_RS16280 PF00749 tRNA synthetases class I (E and Q), catalytic domain D0T88_RS16305 PF03466 LysR substrate binding domain D0T88_RS16305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS16315 PF03825 Nucleoside H+ symporter D0T88_RS16320 PF01048 Phosphorylase superfamily D0T88_RS16325 PF03502 Nucleoside-specific channel-forming protein, Tsx D0T88_RS16330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS16330 PF03466 LysR substrate binding domain D0T88_RS16335 PF13593 SBF-like CPA transporter family (DUF4137) D0T88_RS16340 PF12843 Putative quorum-sensing-regulated virulence factor D0T88_RS16345 PF03120 NAD-dependent DNA ligase OB-fold domain D0T88_RS16345 PF01653 NAD-dependent DNA ligase adenylation domain D0T88_RS16345 PF00533 BRCA1 C Terminus (BRCT) domain D0T88_RS16345 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D0T88_RS16345 PF12826 Helix-hairpin-helix motif D0T88_RS16350 PF04354 ZipA, C-terminal FtsZ-binding domain D0T88_RS16360 PF00291 Pyridoxal-phosphate dependent enzyme D0T88_RS16365 PF00381 PTS HPr component phosphorylation site D0T88_RS16370 PF00391 PEP-utilising enzyme, mobile domain D0T88_RS16370 PF02896 PEP-utilising enzyme, TIM barrel domain D0T88_RS16370 PF05524 PEP-utilising enzyme, N-terminal D0T88_RS16375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D0T88_RS16380 PF08543 Phosphomethylpyrimidine kinase D0T88_RS16385 PF17263 Family of unknown function (DUF5329) D0T88_RS16390 PF00291 Pyridoxal-phosphate dependent enzyme D0T88_RS16395 PF00005 ABC transporter D0T88_RS16400 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS16405 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS16420 PF01418 Helix-turn-helix domain, rpiR family D0T88_RS16420 PF01380 SIS domain D0T88_RS16425 PF01380 SIS domain D0T88_RS16430 PF02378 Phosphotransferase system, EIIC D0T88_RS16430 PF00367 phosphotransferase system, EIIB D0T88_RS16435 PF00144 Beta-lactamase D0T88_RS16440 PF04261 Dyp-type peroxidase family D0T88_RS16445 PF06572 Protein of unknown function (DUF1131) D0T88_RS16450 PF11143 Protein of unknown function (DUF2919) D0T88_RS16455 PF00583 Acetyltransferase (GNAT) family D0T88_RS16460 PF01520 N-acetylmuramoyl-L-alanine amidase D0T88_RS16465 PF01218 Coproporphyrinogen III oxidase D0T88_RS16470 PF12833 Helix-turn-helix domain D0T88_RS16475 PF00936 BMC domain D0T88_RS16475 PF16365 Ethanolamine utilization protein EutK C-terminus D0T88_RS16480 PF00936 BMC domain D0T88_RS16485 PF05985 Ethanolamine ammonia-lyase light chain (EutC) D0T88_RS16490 PF06751 Ethanolamine ammonia lyase large subunit (EutB) D0T88_RS16495 PF06277 Ethanolamine utilisation protein EutA D0T88_RS16500 PF04346 Ethanolamine utilisation protein, EutH D0T88_RS16505 PF00465 Iron-containing alcohol dehydrogenase D0T88_RS16515 PF00171 Aldehyde dehydrogenase family D0T88_RS16520 PF03319 Ethanolamine utilisation protein EutN/carboxysome D0T88_RS16525 PF00936 BMC domain D0T88_RS16530 PF01515 Phosphate acetyl/butaryl transferase D0T88_RS16535 PF01923 Cobalamin adenosyltransferase D0T88_RS16540 PF06249 Ethanolamine utilisation protein EutQ D0T88_RS16545 PF10662 Ethanolamine utilisation - propanediol utilisation D0T88_RS16550 PF00936 BMC domain D0T88_RS16555 PF00390 Malic enzyme, N-terminal domain D0T88_RS16555 PF01515 Phosphate acetyl/butaryl transferase D0T88_RS16555 PF03949 Malic enzyme, NAD binding domain D0T88_RS16560 PF00923 Transaldolase/Fructose-6-phosphate aldolase D0T88_RS16565 PF00456 Transketolase, thiamine diphosphate binding domain D0T88_RS16565 PF02780 Transketolase, C-terminal domain D0T88_RS16565 PF02779 Transketolase, pyrimidine binding domain D0T88_RS16570 PF06674 Protein of unknown function (DUF1176) D0T88_RS16575 PF00293 NUDIX domain D0T88_RS16580 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS16580 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D0T88_RS16580 PF13247 4Fe-4S dicluster domain D0T88_RS16585 PF07730 Histidine kinase D0T88_RS16585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS16585 PF00672 HAMP domain D0T88_RS16585 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term D0T88_RS16590 PF00873 AcrB/AcrD/AcrF family D0T88_RS16600 PF03960 ArsC family D0T88_RS16605 PF07687 Peptidase dimerisation domain D0T88_RS16605 PF01546 Peptidase family M20/M25/M40 D0T88_RS16610 PF13980 Uncharacterised protein family (UPF0370) D0T88_RS16615 PF02230 Phospholipase/Carboxylesterase D0T88_RS16620 PF05127 Helicase D0T88_RS16620 PF13718 GNAT acetyltransferase 2 D0T88_RS16620 PF17176 tRNA-binding domain D0T88_RS16620 PF08351 Domain of unknown function (DUF1726) D0T88_RS16625 PF04228 Putative neutral zinc metallopeptidase D0T88_RS16630 PF01850 PIN domain D0T88_RS16635 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin D0T88_RS16640 PF01259 SAICAR synthetase D0T88_RS16645 PF06804 NlpB/DapX lipoprotein D0T88_RS16650 PF00701 Dihydrodipicolinate synthetase family D0T88_RS16655 PF01842 ACT domain D0T88_RS16660 PF00578 AhpC/TSA family D0T88_RS16665 PF12798 4Fe-4S binding domain D0T88_RS16665 PF00037 4Fe-4S binding domain D0T88_RS16675 PF00146 NADH dehydrogenase D0T88_RS16680 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D0T88_RS16680 PF00361 Proton-conducting membrane transporter D0T88_RS16685 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D0T88_RS16690 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D0T88_RS16690 PF00361 Proton-conducting membrane transporter D0T88_RS16695 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D0T88_RS16695 PF00374 Nickel-dependent hydrogenase D0T88_RS16695 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D0T88_RS16700 PF12838 4Fe-4S dicluster domain D0T88_RS16710 PF07450 Formate hydrogenlyase maturation protein HycH D0T88_RS16715 PF01590 GAF domain D0T88_RS16715 PF00158 Sigma-54 interaction domain D0T88_RS16720 PF01226 Formate/nitrite transporter D0T88_RS16725 PF01594 AI-2E family transporter D0T88_RS16730 PF01435 Peptidase family M48 D0T88_RS16735 PF03960 ArsC family D0T88_RS16740 PF00308 Bacterial dnaA protein D0T88_RS16745 PF00860 Permease family D0T88_RS16755 PF00586 AIR synthase related protein, N-terminal domain D0T88_RS16755 PF02769 AIR synthase related protein, C-terminal domain D0T88_RS16760 PF00551 Formyl transferase D0T88_RS16765 PF13089 Polyphosphate kinase N-terminal domain D0T88_RS16765 PF17941 Polyphosphate kinase C-terminal domain 1 D0T88_RS16765 PF13090 Polyphosphate kinase C-terminal domain 2 D0T88_RS16765 PF02503 Polyphosphate kinase middle domain D0T88_RS16770 PF02541 Ppx/GppA phosphatase family D0T88_RS16775 PF00563 EAL domain D0T88_RS16775 PF05231 MASE1 D0T88_RS16785 PF11119 Protein of unknown function (DUF2633) D0T88_RS16790 PF05433 Glycine zipper 2TM domain D0T88_RS16795 PF17358 Family of unknown function (DUF5384) D0T88_RS16800 PF00117 Glutamine amidotransferase class-I D0T88_RS16800 PF00958 GMP synthase C terminal domain D0T88_RS16800 PF02540 NAD synthase D0T88_RS16805 PF00478 IMP dehydrogenase / GMP reductase domain D0T88_RS16805 PF00571 CBS domain D0T88_RS16810 PF02601 Exonuclease VII, large subunit D0T88_RS16810 PF13742 OB-fold nucleic acid binding domain D0T88_RS16815 PF07191 zinc-ribbons D0T88_RS16820 PF01926 50S ribosome-binding GTPase D0T88_RS16820 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D0T88_RS16825 PF13360 PQQ-like domain D0T88_RS16830 PF09976 Tetratricopeptide repeat-like domain D0T88_RS16835 PF03129 Anticodon binding domain D0T88_RS16835 PF13393 Histidyl-tRNA synthetase D0T88_RS16840 PF04551 GcpE protein D0T88_RS16845 PF13464 Domain of unknown function (DUF4115) D0T88_RS16850 PF04055 Radical SAM superfamily D0T88_RS16855 PF00334 Nucleoside diphosphate kinase D0T88_RS16860 PF00905 Penicillin binding protein transpeptidase domain D0T88_RS16860 PF00912 Transglycosylase D0T88_RS16860 PF06832 Penicillin-Binding Protein C-terminus Family D0T88_RS16865 PF11974 Bacterial alpha-2-macroglobulin MG3 domain D0T88_RS16865 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain D0T88_RS16865 PF01835 MG2 domain D0T88_RS16865 PF00207 Alpha-2-macroglobulin family D0T88_RS16865 PF17962 Bacterial macroglobulin domain 6 D0T88_RS16865 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain D0T88_RS16865 PF07703 Alpha-2-macroglobulin bait region domain D0T88_RS16865 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain D0T88_RS16865 PF07678 A-macroglobulin TED domain D0T88_RS16870 PF00581 Rhodanese-like domain D0T88_RS16875 PF07179 SseB protein N-terminal domain D0T88_RS16875 PF14581 SseB protein C-terminal domain D0T88_RS16880 PF12404 Peptidase D0T88_RS16880 PF00883 Cytosol aminopeptidase family, catalytic domain D0T88_RS16885 PF04384 Iron-sulphur cluster assembly D0T88_RS16890 PF00111 2Fe-2S iron-sulfur cluster binding domain D0T88_RS16895 PF00012 Hsp70 protein D0T88_RS16900 PF07743 HSCB C-terminal oligomerisation domain D0T88_RS16905 PF01521 Iron-sulphur cluster biosynthesis D0T88_RS16910 PF01592 NifU-like N terminal domain D0T88_RS16915 PF00266 Aminotransferase class-V D0T88_RS16920 PF02082 Transcriptional regulator D0T88_RS16925 PF00588 SpoU rRNA Methylase family D0T88_RS16930 PF00459 Inositol monophosphatase family D0T88_RS16935 PF12146 Serine aminopeptidase, S33 D0T88_RS16940 PF00874 PRD domain D0T88_RS16945 PF12832 MFS_1 like family D0T88_RS16950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS16950 PF03466 LysR substrate binding domain D0T88_RS16955 PF00848 Ring hydroxylating alpha subunit (catalytic domain) D0T88_RS16955 PF00355 Rieske [2Fe-2S] domain D0T88_RS16960 PF00866 Ring hydroxylating beta subunit D0T88_RS16965 PF00355 Rieske [2Fe-2S] domain D0T88_RS16970 PF00106 short chain dehydrogenase D0T88_RS16975 PF14759 Reductase C-terminal D0T88_RS16975 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS16980 PF07681 DoxX D0T88_RS16985 PF01263 Aldose 1-epimerase D0T88_RS16990 PF00107 Zinc-binding dehydrogenase D0T88_RS16990 PF08240 Alcohol dehydrogenase GroES-like domain D0T88_RS16995 PF02653 Branched-chain amino acid transport system / permease component D0T88_RS17000 PF00005 ABC transporter D0T88_RS17005 PF13407 Periplasmic binding protein domain D0T88_RS17010 PF17128 Domain of unknown function (DUF5107) D0T88_RS17010 PF13181 Tetratricopeptide repeat D0T88_RS17015 PF00480 ROK family D0T88_RS17020 PF00464 Serine hydroxymethyltransferase D0T88_RS17025 PF00042 Globin D0T88_RS17025 PF00175 Oxidoreductase NAD-binding domain D0T88_RS17025 PF00970 Oxidoreductase FAD-binding domain D0T88_RS17030 PF00543 Nitrogen regulatory protein P-II D0T88_RS17035 PF00158 Sigma-54 interaction domain D0T88_RS17035 PF00072 Response regulator receiver domain D0T88_RS17040 PF13942 YfhG lipoprotein D0T88_RS17045 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS17045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS17050 PF02769 AIR synthase related protein, C-terminal domain D0T88_RS17050 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D0T88_RS17050 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal D0T88_RS17055 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0T88_RS17055 PF01464 Transglycosylase SLT domain D0T88_RS17060 PF14437 MafB19-like deaminase D0T88_RS17070 PF01380 SIS domain D0T88_RS17070 PF01418 Helix-turn-helix domain, rpiR family D0T88_RS17075 PF12838 4Fe-4S dicluster domain D0T88_RS17085 PF01648 4'-phosphopantetheinyl transferase superfamily D0T88_RS17090 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ D0T88_RS17095 PF11967 Recombination protein O N terminal D0T88_RS17095 PF02565 Recombination protein O C terminal D0T88_RS17100 PF07650 KH domain D0T88_RS17100 PF01926 50S ribosome-binding GTPase D0T88_RS17105 PF14622 Ribonuclease-III-like D0T88_RS17105 PF00035 Double-stranded RNA binding motif D0T88_RS17110 PF10502 Signal peptidase, peptidase S26 D0T88_RS17115 PF00009 Elongation factor Tu GTP binding domain D0T88_RS17115 PF03144 Elongation factor Tu domain 2 D0T88_RS17115 PF06421 GTP-binding protein LepA C-terminus D0T88_RS17115 PF00679 Elongation factor G C-terminus D0T88_RS17125 PF17188 MucB/RseB C-terminal domain D0T88_RS17125 PF03888 MucB/RseB N-terminal domain D0T88_RS17130 PF03872 Anti sigma-E protein RseA, N-terminal domain D0T88_RS17130 PF03873 Anti sigma-E protein RseA, C-terminal domain D0T88_RS17135 PF04542 Sigma-70 region 2 D0T88_RS17135 PF08281 Sigma-70, region 4 D0T88_RS17145 PF00890 FAD binding domain D0T88_RS17145 PF02910 Fumarate reductase flavoprotein C-term D0T88_RS17150 PF05175 Methyltransferase small domain D0T88_RS17155 PF00271 Helicase conserved C-terminal domain D0T88_RS17155 PF00270 DEAD/DEAH box helicase D0T88_RS17160 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS17160 PF01548 Transposase D0T88_RS17165 PF03466 LysR substrate binding domain D0T88_RS17165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS17170 PF01810 LysE type translocator D0T88_RS17175 PF01228 Glycine radical D0T88_RS17180 PF03167 Uracil DNA glycosylase superfamily D0T88_RS17185 PF08032 RNA 2'-O ribose methyltransferase substrate binding D0T88_RS17185 PF00588 SpoU rRNA Methylase family D0T88_RS17190 PF00085 Thioredoxin D0T88_RS17195 PF03942 DTW domain D0T88_RS17200 PF00583 Acetyltransferase (GNAT) family D0T88_RS17200 PF13607 Succinyl-CoA ligase like flavodoxin domain D0T88_RS17200 PF13380 CoA binding domain D0T88_RS17205 PF13091 PLD-like domain D0T88_RS17210 PF10043 Predicted periplasmic lipoprotein (DUF2279) D0T88_RS17215 PF00083 Sugar (and other) transporter D0T88_RS17240 PF02861 Clp amino terminal domain, pathogenicity island component D0T88_RS17240 PF10431 C-terminal, D2-small domain, of ClpB protein D0T88_RS17240 PF00004 ATPase family associated with various cellular activities (AAA) D0T88_RS17240 PF07724 AAA domain (Cdc48 subfamily) D0T88_RS17240 PF17871 AAA lid domain D0T88_RS17245 PF02578 Multi-copper polyphenol oxidoreductase laccase D0T88_RS17250 PF01479 S4 domain D0T88_RS17250 PF00849 RNA pseudouridylate synthase D0T88_RS17255 PF13525 Outer membrane lipoprotein D0T88_RS17260 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D0T88_RS17270 PF00800 Prephenate dehydratase D0T88_RS17270 PF01817 Chorismate mutase type II D0T88_RS17275 PF01817 Chorismate mutase type II D0T88_RS17275 PF02153 Prephenate dehydrogenase D0T88_RS17280 PF00793 DAHP synthetase I family D0T88_RS17285 PF10973 Protein of unknown function (DUF2799) D0T88_RS17290 PF13689 YfiR/HmsC-like D0T88_RS17295 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS17295 PF17152 Periplasmic sensor domain D0T88_RS17300 PF00691 OmpA family D0T88_RS17305 PF01245 Ribosomal protein L19 D0T88_RS17310 PF01746 tRNA (Guanine-1)-methyltransferase D0T88_RS17315 PF01782 RimM N-terminal domain D0T88_RS17315 PF05239 PRC-barrel domain D0T88_RS17320 PF00886 Ribosomal protein S16 D0T88_RS17325 PF00448 SRP54-type protein, GTPase domain D0T88_RS17325 PF02978 Signal peptide binding domain D0T88_RS17325 PF02881 SRP54-type protein, helical bundle domain D0T88_RS17330 PF01578 Cytochrome C assembly protein D0T88_RS17335 PF01595 Cyclin M transmembrane N-terminal domain D0T88_RS17335 PF00571 CBS domain D0T88_RS17335 PF03471 Transporter associated domain D0T88_RS17345 PF01025 GrpE D0T88_RS17350 PF01513 ATP-NAD kinase D0T88_RS17355 PF02463 RecF/RecN/SMC N terminal domain D0T88_RS17360 PF04355 SmpA / OmlA family D0T88_RS17365 PF03658 RnfH family Ubiquitin D0T88_RS17370 PF03364 Polyketide cyclase / dehydrase and lipid transport D0T88_RS17375 PF01668 SmpB protein D0T88_RS17385 PF13356 Arm DNA-binding domain D0T88_RS17385 PF00589 Phage integrase family D0T88_RS17430 PF17345 Family of unknown function (DUF5375) D0T88_RS17440 PF13356 Arm DNA-binding domain D0T88_RS17440 PF00589 Phage integrase family D0T88_RS17470 PF08943 CsiD D0T88_RS17475 PF01266 FAD dependent oxidoreductase D0T88_RS17480 PF00171 Aldehyde dehydrogenase family D0T88_RS17485 PF00202 Aminotransferase class-III D0T88_RS17490 PF00324 Amino acid permease D0T88_RS17495 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS17495 PF07729 FCD domain D0T88_RS17500 PF04972 BON domain D0T88_RS17500 PF01476 LysM domain D0T88_RS17505 PF01679 Proteolipid membrane potential modulator D0T88_RS17510 PF01022 Bacterial regulatory protein, arsR family D0T88_RS17515 PF00581 Rhodanese-like domain D0T88_RS17515 PF11127 Protein of unknown function (DUF2892) D0T88_RS17520 PF00816 H-NS histone family D0T88_RS17525 PF06610 L-alanine exporter D0T88_RS17530 PF09400 Protein of unknown function (DUF2002) D0T88_RS17535 PF05957 Bacterial protein of unknown function (DUF883) D0T88_RS17540 PF00462 Glutaredoxin D0T88_RS17545 PF07972 NrdI Flavodoxin like D0T88_RS17550 PF00317 Ribonucleotide reductase, all-alpha domain D0T88_RS17550 PF08343 Ribonucleotide reductase N-terminal D0T88_RS17550 PF02867 Ribonucleotide reductase, barrel domain D0T88_RS17555 PF00268 Ribonucleotide reductase, small chain D0T88_RS17560 PF00571 CBS domain D0T88_RS17560 PF00005 ABC transporter D0T88_RS17565 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS17570 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D0T88_RS17575 PF07690 Major Facilitator Superfamily D0T88_RS17580 PF03591 AzlC protein D0T88_RS17585 PF05437 Branched-chain amino acid transport protein (AzlD) D0T88_RS17590 PF01047 MarR family D0T88_RS17595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0T88_RS17595 PF00529 HlyD membrane-fusion protein of T1SS D0T88_RS17600 PF07690 Major Facilitator Superfamily D0T88_RS17605 PF02664 S-Ribosylhomocysteinase (LuxS) D0T88_RS17610 PF04262 Glutamate-cysteine ligase D0T88_RS17615 PF09335 SNARE associated Golgi protein D0T88_RS17620 PF13419 Haloacid dehalogenase-like hydrolase D0T88_RS17650 PF02599 Global regulator protein family D0T88_RS17655 PF02272 DHHA1 domain D0T88_RS17655 PF01411 tRNA synthetases class II (A) D0T88_RS17655 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D0T88_RS17660 PF02631 RecX family D0T88_RS17665 PF00154 recA bacterial DNA recombination protein D0T88_RS17670 PF02464 Competence-damaged protein D0T88_RS17675 PF13406 Transglycosylase SLT domain D0T88_RS17680 PF03608 PTS system enzyme II sorbitol-specific factor D0T88_RS17685 PF07663 Sorbitol phosphotransferase enzyme II C-terminus D0T88_RS17685 PF03612 Sorbitol phosphotransferase enzyme II N-terminus D0T88_RS17690 PF03829 PTS system glucitol/sorbitol-specific IIA component D0T88_RS17695 PF00106 short chain dehydrogenase D0T88_RS17700 PF06923 Glucitol operon activator protein (GutM) D0T88_RS17705 PF00455 DeoR C terminal sensor domain D0T88_RS17705 PF08220 DeoR-like helix-turn-helix domain D0T88_RS17710 PF00571 CBS domain D0T88_RS17710 PF01380 SIS domain D0T88_RS17715 PF01590 GAF domain D0T88_RS17715 PF00158 Sigma-54 interaction domain D0T88_RS17720 PF00753 Metallo-beta-lactamase superfamily D0T88_RS17720 PF00258 Flavodoxin D0T88_RS17720 PF00301 Rubredoxin D0T88_RS17725 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS17725 PF18113 Rubredoxin binding C-terminal domain D0T88_RS17730 PF01300 Telomere recombination D0T88_RS17730 PF07503 HypF finger D0T88_RS17730 PF00708 Acylphosphatase D0T88_RS17730 PF17788 HypF Kae1-like domain D0T88_RS17735 PF13247 4Fe-4S dicluster domain D0T88_RS17735 PF12800 4Fe-4S binding domain D0T88_RS17740 PF00356 Bacterial regulatory proteins, lacI family D0T88_RS17745 PF02378 Phosphotransferase system, EIIC D0T88_RS17745 PF00367 phosphotransferase system, EIIB D0T88_RS17750 PF00232 Glycosyl hydrolase family 1 D0T88_RS17755 PF01381 Helix-turn-helix D0T88_RS17765 PF01750 Hydrogenase maturation protease D0T88_RS17770 PF07450 Formate hydrogenlyase maturation protein HycH D0T88_RS17775 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D0T88_RS17780 PF12838 4Fe-4S dicluster domain D0T88_RS17785 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D0T88_RS17785 PF00374 Nickel-dependent hydrogenase D0T88_RS17785 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D0T88_RS17790 PF00146 NADH dehydrogenase D0T88_RS17795 PF00361 Proton-conducting membrane transporter D0T88_RS17800 PF13247 4Fe-4S dicluster domain D0T88_RS17805 PF11046 Transcriptional repressor of hyc and hyp operons D0T88_RS17810 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA D0T88_RS17815 PF02492 CobW/HypB/UreG, nucleotide-binding domain D0T88_RS17820 PF01455 HupF/HypC family D0T88_RS17825 PF01924 Hydrogenase formation hypA family D0T88_RS17830 PF00586 AIR synthase related protein, N-terminal domain D0T88_RS17830 PF02769 AIR synthase related protein, C-terminal domain D0T88_RS17835 PF01590 GAF domain D0T88_RS17835 PF00158 Sigma-54 interaction domain D0T88_RS17840 PF11756 Nitrous oxide-stimulated promoter D0T88_RS17850 PF05192 MutS domain III D0T88_RS17850 PF05190 MutS family domain IV D0T88_RS17850 PF00488 MutS domain V D0T88_RS17850 PF01624 MutS domain I D0T88_RS17850 PF05188 MutS domain II D0T88_RS17860 PF08220 DeoR-like helix-turn-helix domain D0T88_RS17860 PF00455 DeoR C terminal sensor domain D0T88_RS17865 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D0T88_RS17865 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D0T88_RS17870 PF17042 Nucleotide-binding C-terminal domain D0T88_RS17870 PF07005 Sugar-binding N-terminal domain D0T88_RS17875 PF00596 Class II Aldolase and Adducin N-terminal domain D0T88_RS17880 PF01261 Xylose isomerase-like TIM barrel D0T88_RS17885 PF02447 GntP family permease D0T88_RS17895 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase D0T88_RS17900 PF02441 Flavoprotein D0T88_RS17905 PF01047 MarR family D0T88_RS17910 PF04545 Sigma-70, region 4 D0T88_RS17910 PF00140 Sigma-70 factor, region 1.2 D0T88_RS17910 PF04539 Sigma-70 region 3 D0T88_RS17910 PF04542 Sigma-70 region 2 D0T88_RS17915 PF01551 Peptidase family M23 D0T88_RS17915 PF01476 LysM domain D0T88_RS17925 PF01975 Survival protein SurE D0T88_RS17930 PF01142 tRNA pseudouridine synthase D (TruD) D0T88_RS17935 PF02542 YgbB family D0T88_RS17940 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D0T88_RS17945 PF04977 Septum formation initiator D0T88_RS17950 PF12084 Protein of unknown function (DUF3561) D0T88_RS17960 PF00009 Elongation factor Tu GTP binding domain D0T88_RS17965 PF01507 Phosphoadenosine phosphosulfate reductase family D0T88_RS17970 PF04389 Peptidase family M28 D0T88_RS17975 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) D0T88_RS17980 PF01867 CRISPR associated protein Cas1 D0T88_RS17990 PF09704 CRISPR-associated protein (Cas_Cas5) D0T88_RS17995 PF09344 CT1975-like protein D0T88_RS18010 PF00271 Helicase conserved C-terminal domain D0T88_RS18010 PF18019 HD domain D0T88_RS18010 PF00270 DEAD/DEAH box helicase D0T88_RS18015 PF01848 Hok/gef family D0T88_RS18020 PF01507 Phosphoadenosine phosphosulfate reductase family D0T88_RS18025 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D0T88_RS18025 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D0T88_RS18030 PF00175 Oxidoreductase NAD-binding domain D0T88_RS18030 PF00258 Flavodoxin D0T88_RS18030 PF00667 FAD binding domain D0T88_RS18035 PF01242 6-pyruvoyl tetrahydropterin synthase D0T88_RS18040 PF01266 FAD dependent oxidoreductase D0T88_RS18050 PF04309 Glycerol-3-phosphate responsive antiterminator D0T88_RS18055 PF01012 Electron transfer flavoprotein domain D0T88_RS18055 PF00766 Electron transfer flavoprotein FAD-binding domain D0T88_RS18060 PF01012 Electron transfer flavoprotein domain D0T88_RS18065 PF00083 Sugar (and other) transporter D0T88_RS18070 PF02913 FAD linked oxidases, C-terminal domain D0T88_RS18070 PF01565 FAD binding domain D0T88_RS18080 PF07690 Major Facilitator Superfamily D0T88_RS18085 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D0T88_RS18085 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D0T88_RS18090 PF04055 Radical SAM superfamily D0T88_RS18100 PF04536 TPM domain D0T88_RS18105 PF00113 Enolase, C-terminal TIM barrel domain D0T88_RS18105 PF03952 Enolase, N-terminal domain D0T88_RS18110 PF00117 Glutamine amidotransferase class-I D0T88_RS18110 PF06418 CTP synthase N-terminus D0T88_RS18115 PF03819 MazG nucleotide pyrophosphohydrolase domain D0T88_RS18120 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system D0T88_RS18125 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin D0T88_RS18130 PF13291 ACT domain D0T88_RS18130 PF04607 Region found in RelA / SpoT proteins D0T88_RS18130 PF02824 TGS domain D0T88_RS18135 PF05958 tRNA (Uracil-5-)-methyltransferase D0T88_RS18135 PF01938 TRAM domain D0T88_RS18140 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D0T88_RS18140 PF00672 HAMP domain D0T88_RS18140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS18140 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS18140 PF00072 Response regulator receiver domain D0T88_RS18140 PF01627 Hpt domain D0T88_RS18145 PF13378 Enolase C-terminal domain-like D0T88_RS18150 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D0T88_RS18150 PF13378 Enolase C-terminal domain-like D0T88_RS18155 PF07690 Major Facilitator Superfamily D0T88_RS18160 PF00258 Flavodoxin D0T88_RS18165 PF00849 RNA pseudouridylate synthase D0T88_RS18170 PF04287 tRNA pseudouridine synthase C D0T88_RS18175 PF07348 Syd protein (SUKH-2) D0T88_RS18180 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term D0T88_RS18180 PF14489 QueF-like protein D0T88_RS18185 PF11892 Domain of unknown function (DUF3412) D0T88_RS18185 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases D0T88_RS18185 PF03641 Possible lysine decarboxylase D0T88_RS18195 PF03313 Serine dehydratase alpha chain D0T88_RS18195 PF03315 Serine dehydratase beta chain D0T88_RS18200 PF01367 5'-3' exonuclease, C-terminal SAM fold D0T88_RS18200 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D0T88_RS18205 PF00465 Iron-containing alcohol dehydrogenase D0T88_RS18210 PF00596 Class II Aldolase and Adducin N-terminal domain D0T88_RS18215 PF07690 Major Facilitator Superfamily D0T88_RS18220 PF07882 L-fucose isomerase, second N-terminal domain D0T88_RS18220 PF02952 L-fucose isomerase, C-terminal domain D0T88_RS18220 PF07881 L-fucose isomerase, first N-terminal domain D0T88_RS18225 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D0T88_RS18225 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D0T88_RS18230 PF05025 RbsD / FucU transport protein family D0T88_RS18235 PF08220 DeoR-like helix-turn-helix domain D0T88_RS18235 PF00455 DeoR C terminal sensor domain D0T88_RS18240 PF18125 RlmM ferredoxin-like domain D0T88_RS18240 PF01728 FtsJ-like methyltransferase D0T88_RS18245 PF04241 Protein of unknown function (DUF423) D0T88_RS18250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS18250 PF03466 LysR substrate binding domain D0T88_RS18255 PF06004 Bacterial protein of unknown function (DUF903) D0T88_RS18260 PF00266 Aminotransferase class-V D0T88_RS18265 PF02657 Fe-S metabolism associated domain D0T88_RS18270 PF00899 ThiF family D0T88_RS18275 PF06725 3D domain D0T88_RS18275 PF03562 MltA specific insert domain D0T88_RS18295 PF11741 AMIN domain D0T88_RS18295 PF01520 N-acetylmuramoyl-L-alanine amidase D0T88_RS18300 PF00696 Amino acid kinase family D0T88_RS18300 PF00583 Acetyltransferase (GNAT) family D0T88_RS18305 PF13538 UvrD-like helicase C-terminal domain D0T88_RS18310 PF13361 UvrD-like helicase C-terminal domain D0T88_RS18310 PF00580 UvrD/REP helicase N-terminal domain D0T88_RS18310 PF12705 PD-(D/E)XK nuclease superfamily D0T88_RS18315 PF00675 Insulinase (Peptidase family M16) D0T88_RS18315 PF16187 Middle or third domain of peptidase_M16 D0T88_RS18315 PF05193 Peptidase M16 inactive domain D0T88_RS18320 PF17946 RecC C-terminal domain D0T88_RS18325 PF12528 Type II secretion prepilin peptidase dependent protein C D0T88_RS18325 PF07963 Prokaryotic N-terminal methylation motif D0T88_RS18330 PF10713 Protein of unknown function (DUF2509) D0T88_RS18335 PF07963 Prokaryotic N-terminal methylation motif D0T88_RS18340 PF07963 Prokaryotic N-terminal methylation motif D0T88_RS18345 PF00303 Thymidylate synthase D0T88_RS18350 PF01790 Prolipoprotein diacylglyceryl transferase D0T88_RS18355 PF00391 PEP-utilising enzyme, mobile domain D0T88_RS18355 PF05524 PEP-utilising enzyme, N-terminal D0T88_RS18355 PF02896 PEP-utilising enzyme, TIM barrel domain D0T88_RS18355 PF01590 GAF domain D0T88_RS18360 PF00293 NUDIX domain D0T88_RS18365 PF02976 DNA mismatch repair enzyme MutH D0T88_RS18370 PF03741 Integral membrane protein TerC family D0T88_RS18375 PF06004 Bacterial protein of unknown function (DUF903) D0T88_RS18380 PF00248 Aldo/keto reductase family D0T88_RS18385 PF07690 Major Facilitator Superfamily D0T88_RS18390 PF00501 AMP-binding enzyme D0T88_RS18390 PF01553 Acyltransferase D0T88_RS18395 PF00356 Bacterial regulatory proteins, lacI family D0T88_RS18400 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D0T88_RS18400 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D0T88_RS18405 PF03466 LysR substrate binding domain D0T88_RS18405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS18410 PF01177 Asp/Glu/Hydantoin racemase D0T88_RS18415 PF00083 Sugar (and other) transporter D0T88_RS18425 PF04962 KduI/IolB family D0T88_RS18430 PF00108 Thiolase, N-terminal domain D0T88_RS18430 PF02803 Thiolase, C-terminal domain D0T88_RS18435 PF03222 Tryptophan/tyrosine permease family D0T88_RS18440 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS18445 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS18470 PF07720 Tetratricopeptide repeat D0T88_RS18475 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS18485 PF01464 Transglycosylase SLT domain D0T88_RS18500 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) D0T88_RS18520 PF09480 Type III secretion system protein PrgH-EprH (PrgH) D0T88_RS18535 PF01312 FlhB HrpN YscU SpaS Family D0T88_RS18540 PF01312 FlhB HrpN YscU SpaS Family D0T88_RS18545 PF01311 Bacterial export proteins, family 1 D0T88_RS18555 PF00813 FliP family D0T88_RS18580 PF01476 LysM domain D0T88_RS18580 PF01551 Peptidase family M23 D0T88_RS18585 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D0T88_RS18585 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D0T88_RS18590 PF00941 FAD binding domain in molybdopterin dehydrogenase D0T88_RS18590 PF03450 CO dehydrogenase flavoprotein C-terminal domain D0T88_RS18595 PF00111 2Fe-2S iron-sulfur cluster binding domain D0T88_RS18595 PF01799 [2Fe-2S] binding domain D0T88_RS18600 PF13188 PAS domain D0T88_RS18600 PF02954 Bacterial regulatory protein, Fis family D0T88_RS18600 PF00158 Sigma-54 interaction domain D0T88_RS18605 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D0T88_RS18605 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D0T88_RS18610 PF00291 Pyridoxal-phosphate dependent enzyme D0T88_RS18615 PF07687 Peptidase dimerisation domain D0T88_RS18615 PF01546 Peptidase family M20/M25/M40 D0T88_RS18620 PF01979 Amidohydrolase family D0T88_RS18625 PF00696 Amino acid kinase family D0T88_RS18630 PF02625 XdhC and CoxI family D0T88_RS18630 PF13478 XdhC Rossmann domain D0T88_RS18640 PF12804 MobA-like NTP transferase domain D0T88_RS18645 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D0T88_RS18645 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS18650 PF01979 Amidohydrolase family D0T88_RS18655 PF00941 FAD binding domain in molybdopterin dehydrogenase D0T88_RS18660 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D0T88_RS18660 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D0T88_RS18660 PF01799 [2Fe-2S] binding domain D0T88_RS18665 PF00860 Permease family D0T88_RS18670 PF01979 Amidohydrolase family D0T88_RS18680 PF13247 4Fe-4S dicluster domain D0T88_RS18685 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D0T88_RS18685 PF13247 4Fe-4S dicluster domain D0T88_RS18685 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS18690 PF00860 Permease family D0T88_RS18705 PF00293 NUDIX domain D0T88_RS18710 PF00152 tRNA synthetases class II (D, K and N) D0T88_RS18710 PF01336 OB-fold nucleic acid binding domain D0T88_RS18720 PF02272 DHHA1 domain D0T88_RS18720 PF17768 RecJ OB domain D0T88_RS18720 PF01368 DHH family D0T88_RS18725 PF13098 Thioredoxin-like domain D0T88_RS18725 PF10411 Disulfide bond isomerase protein N-terminus D0T88_RS18730 PF00589 Phage integrase family D0T88_RS18730 PF02899 Phage integrase, N-terminal SAM-like domain D0T88_RS18735 PF00258 Flavodoxin D0T88_RS18740 PF07254 Membrane-bound toxin component of toxin-antitoxin system D0T88_RS18745 PF03937 Flavinator of succinate dehydrogenase D0T88_RS18750 PF01571 Aminomethyltransferase folate-binding domain D0T88_RS18755 PF01548 Transposase D0T88_RS18755 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS18760 PF03006 Haemolysin-III related D0T88_RS18765 PF04266 ASCH domain D0T88_RS18770 PF00232 Glycosyl hydrolase family 1 D0T88_RS18780 PF02347 Glycine cleavage system P-protein D0T88_RS18785 PF01597 Glycine cleavage H-protein D0T88_RS18790 PF08669 Glycine cleavage T-protein C-terminal barrel domain D0T88_RS18790 PF01571 Aminomethyltransferase folate-binding domain D0T88_RS18800 PF01494 FAD binding domain D0T88_RS18805 PF01494 FAD binding domain D0T88_RS18810 PF05195 Aminopeptidase P, N-terminal domain D0T88_RS18810 PF00557 Metallopeptidase family M24 D0T88_RS18815 PF03695 Uncharacterised protein family (UPF0149) D0T88_RS18820 PF05164 Cell division protein ZapA D0T88_RS18830 PF01812 5-formyltetrahydrofolate cyclo-ligase family D0T88_RS18845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D0T88_RS18845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D0T88_RS18845 PF01842 ACT domain D0T88_RS18850 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D0T88_RS18855 PF03466 LysR substrate binding domain D0T88_RS18860 PF03466 LysR substrate binding domain D0T88_RS18860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS18865 PF01642 Methylmalonyl-CoA mutase D0T88_RS18865 PF02310 B12 binding domain D0T88_RS18875 PF00378 Enoyl-CoA hydratase/isomerase D0T88_RS18880 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain D0T88_RS18880 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain D0T88_RS18885 PF03466 LysR substrate binding domain D0T88_RS18885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS18890 PF04402 Protein of unknown function (DUF541) D0T88_RS18895 PF01810 LysE type translocator D0T88_RS18900 PF05552 Conserved TM helix D0T88_RS18900 PF00924 Mechanosensitive ion channel D0T88_RS18905 PF01116 Fructose-bisphosphate aldolase class-II D0T88_RS18910 PF00162 Phosphoglycerate kinase D0T88_RS18915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D0T88_RS18915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D0T88_RS18935 PF00005 ABC transporter D0T88_RS18940 PF00005 ABC transporter D0T88_RS18950 PF05068 Mannitol repressor D0T88_RS18955 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded D0T88_RS18960 PF00107 Zinc-binding dehydrogenase D0T88_RS18960 PF08240 Alcohol dehydrogenase GroES-like domain D0T88_RS18965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0T88_RS18965 PF02378 Phosphotransferase system, EIIC D0T88_RS18970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0T88_RS18975 PF02779 Transketolase, pyrimidine binding domain D0T88_RS18975 PF02780 Transketolase, C-terminal domain D0T88_RS18975 PF00456 Transketolase, thiamine diphosphate binding domain D0T88_RS18980 PF01435 Peptidase family M48 D0T88_RS18985 PF07071 KDGP aldolase D0T88_RS18990 PF03841 L-seryl-tRNA selenium transferase D0T88_RS18995 PF03613 PTS system mannose/fructose/sorbose family IID component D0T88_RS19000 PF03609 PTS system sorbose-specific iic component D0T88_RS19005 PF03610 PTS system fructose IIA component D0T88_RS19005 PF03830 PTS system sorbose subfamily IIB component D0T88_RS19015 PF00874 PRD domain D0T88_RS19015 PF00158 Sigma-54 interaction domain D0T88_RS19020 PF00491 Arginase family D0T88_RS19030 PF17944 Arginine decarboxylase C-terminal helical extension D0T88_RS19030 PF17810 Arginine decarboxylase helical bundle domain D0T88_RS19030 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D0T88_RS19035 PF11036 Virulence promoting factor D0T88_RS19040 PF17430 Uncharacterized YqgC-like D0T88_RS19045 PF02772 S-adenosylmethionine synthetase, central domain D0T88_RS19045 PF00438 S-adenosylmethionine synthetase, N-terminal domain D0T88_RS19045 PF02773 S-adenosylmethionine synthetase, C-terminal domain D0T88_RS19050 PF00083 Sugar (and other) transporter D0T88_RS19055 PF17283 SprT-like zinc ribbon domain D0T88_RS19055 PF10263 SprT-like family D0T88_RS19060 PF04231 Endonuclease I D0T88_RS19065 PF04452 RNA methyltransferase D0T88_RS19070 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain D0T88_RS19070 PF02951 Prokaryotic glutathione synthetase, N-terminal domain D0T88_RS19075 PF02622 Uncharacterized ACR, COG1678 D0T88_RS19080 PF03652 Holliday junction resolvase D0T88_RS19085 PF00437 Type II/IV secretion system protein D0T88_RS19090 PF01168 Alanine racemase, N-terminal domain D0T88_RS19095 PF02325 YGGT family D0T88_RS19100 PF02594 Uncharacterised ACR, YggU family COG1872 D0T88_RS19105 PF01725 Ham1 family D0T88_RS19110 PF04055 Radical SAM superfamily D0T88_RS19110 PF06969 HemN C-terminal domain D0T88_RS19115 PF06717 Protein of unknown function (DUF1202) D0T88_RS19120 PF17763 Glutaminase/Asparaginase C-terminal domain D0T88_RS19120 PF00710 Asparaginase, N-terminal D0T88_RS19125 PF11101 Protein of unknown function (DUF2884) D0T88_RS19130 PF04320 Protein with unknown function (DUF469) D0T88_RS19135 PF02390 Putative methyltransferase D0T88_RS19140 PF14815 NUDIX domain D0T88_RS19140 PF00730 HhH-GPD superfamily base excision DNA repair protein D0T88_RS19140 PF00633 Helix-hairpin-helix motif D0T88_RS19140 PF10576 Iron-sulfur binding domain of endonuclease III D0T88_RS19145 PF04362 Bacterial Fe(2+) trafficking D0T88_RS19150 PF01464 Transglycosylase SLT domain D0T88_RS19150 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain D0T88_RS19155 PF03825 Nucleoside H+ symporter D0T88_RS19160 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain D0T88_RS19160 PF01276 Orn/Lys/Arg decarboxylase, major domain D0T88_RS19160 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain D0T88_RS19165 PF04474 Protein of unknown function (DUF554) D0T88_RS19175 PF04612 Type II secretion system (T2SS), protein M D0T88_RS19180 PF12693 GspL periplasmic domain D0T88_RS19185 PF03934 Type II secretion system (T2SS), protein K D0T88_RS19190 PF07963 Prokaryotic N-terminal methylation motif D0T88_RS19190 PF11612 Type II secretion system (T2SS), protein J D0T88_RS19195 PF02501 Type II secretion system (T2SS), protein I D0T88_RS19195 PF07963 Prokaryotic N-terminal methylation motif D0T88_RS19200 PF12019 Type II transport protein GspH D0T88_RS19205 PF08334 Type II secretion system (T2SS), protein G D0T88_RS19205 PF07963 Prokaryotic N-terminal methylation motif D0T88_RS19210 PF00482 Type II secretion system (T2SS), protein F D0T88_RS19215 PF00437 Type II/IV secretion system protein D0T88_RS19220 PF00263 Bacterial type II and III secretion system protein D0T88_RS19220 PF03958 Bacterial type II/III secretion system short domain D0T88_RS19225 PF11356 Type II secretion system protein C D0T88_RS19235 PF06750 Bacterial Peptidase A24 N-terminal domain D0T88_RS19235 PF01478 Type IV leader peptidase family D0T88_RS19240 PF13322 Domain of unknown function (DUF4092) D0T88_RS19240 PF17291 N-terminal domain of M60-like peptidases D0T88_RS19240 PF13402 Peptidase M60, enhancin and enhancin-like D0T88_RS19245 PF02652 L-lactate permease D0T88_RS19250 PF01274 Malate synthase D0T88_RS19255 PF03928 Haem-degrading D0T88_RS19260 PF13183 4Fe-4S dicluster domain D0T88_RS19260 PF02754 Cysteine-rich domain D0T88_RS19265 PF01565 FAD binding domain D0T88_RS19270 PF01565 FAD binding domain D0T88_RS19270 PF02913 FAD linked oxidases, C-terminal domain D0T88_RS19275 PF07729 FCD domain D0T88_RS19275 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS19285 PF14535 AMP-binding enzyme C-terminal domain D0T88_RS19285 PF00501 AMP-binding enzyme D0T88_RS19295 PF00550 Phosphopantetheine attachment site D0T88_RS19300 PF00155 Aminotransferase class I and II D0T88_RS19310 PF03739 Lipopolysaccharide export system permease LptF/LptG D0T88_RS19315 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) D0T88_RS19325 PF01943 Polysaccharide biosynthesis protein D0T88_RS19345 PF01384 Phosphate transporter family D0T88_RS19350 PF03738 Glutathionylspermidine synthase preATP-grasp D0T88_RS19350 PF05257 CHAP domain D0T88_RS19355 PF02798 Glutathione S-transferase, N-terminal domain D0T88_RS19360 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS19360 PF01548 Transposase D0T88_RS19365 PF01455 HupF/HypC family D0T88_RS19370 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA D0T88_RS19375 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE D0T88_RS19380 PF01750 Hydrogenase maturation protease D0T88_RS19385 PF00374 Nickel-dependent hydrogenase D0T88_RS19390 PF03916 Polysulphide reductase, NrfD D0T88_RS19395 PF13247 4Fe-4S dicluster domain D0T88_RS19400 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D0T88_RS19400 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal D0T88_RS19405 PF11115 Protein of unknown function (DUF2623) D0T88_RS19410 PF01738 Dienelactone hydrolase family D0T88_RS19415 PF00248 Aldo/keto reductase family D0T88_RS19420 PF03350 Uncharacterized protein family, UPF0114 D0T88_RS19430 PF02472 Biopolymer transport protein ExbD/TolR D0T88_RS19435 PF01618 MotA/TolQ/ExbB proton channel family D0T88_RS19440 PF01053 Cys/Met metabolism PLP-dependent enzyme D0T88_RS19445 PF09335 SNARE associated Golgi protein D0T88_RS19450 PF12833 Helix-turn-helix domain D0T88_RS19450 PF06719 AraC-type transcriptional regulator N-terminus D0T88_RS19455 PF00465 Iron-containing alcohol dehydrogenase D0T88_RS19460 PF00248 Aldo/keto reductase family D0T88_RS19465 PF12883 Protein of unknown function (DUF3828) D0T88_RS19470 PF04728 Lipoprotein leucine-zipper D0T88_RS19475 PF11842 Domain of unknown function (DUF3362) D0T88_RS19475 PF04055 Radical SAM superfamily D0T88_RS19475 PF08497 Radical SAM N-terminal D0T88_RS19480 PF07731 Multicopper oxidase D0T88_RS19480 PF00394 Multicopper oxidase D0T88_RS19480 PF07732 Multicopper oxidase D0T88_RS19485 PF01553 Acyltransferase D0T88_RS19490 PF03989 DNA gyrase C-terminal domain, beta-propeller D0T88_RS19490 PF00521 DNA gyrase/topoisomerase IV, subunit A D0T88_RS19495 PF06445 GyrI-like small molecule binding domain D0T88_RS19500 PF04076 Bacterial OB fold (BOF) protein D0T88_RS19505 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS19505 PF00072 Response regulator receiver domain D0T88_RS19510 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS19510 PF08521 Two-component sensor kinase N-terminal D0T88_RS19510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS19515 PF10840 Protein of unknown function (DUF2645) D0T88_RS19520 PF02525 Flavodoxin-like fold D0T88_RS19525 PF03992 Antibiotic biosynthesis monooxygenase D0T88_RS19550 PF00294 pfkB family carbohydrate kinase D0T88_RS19570 PF01751 Toprim domain D0T88_RS19570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS19570 PF00986 DNA gyrase B subunit, carboxyl terminus D0T88_RS19570 PF00204 DNA gyrase B D0T88_RS19575 PF05728 Uncharacterised protein family (UPF0227) D0T88_RS19580 PF00149 Calcineurin-like phosphoesterase D0T88_RS19585 PF06853 Protein of unknown function (DUF1249) D0T88_RS19590 PF00293 NUDIX domain D0T88_RS19595 PF02321 Outer membrane efflux protein D0T88_RS19600 PF06693 Protein of unknown function (DUF1190) D0T88_RS19605 PF03738 Glutathionylspermidine synthase preATP-grasp D0T88_RS19610 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase D0T88_RS19615 PF02535 ZIP Zinc transporter D0T88_RS19625 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D0T88_RS19630 PF04380 Membrane fusogenic activity D0T88_RS19635 PF00419 Fimbrial protein D0T88_RS19640 PF13953 PapC C-terminal domain D0T88_RS19640 PF00577 Outer membrane usher protein D0T88_RS19640 PF13954 PapC N-terminal domain D0T88_RS19645 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D0T88_RS19645 PF02753 Pili assembly chaperone PapD, C-terminal domain D0T88_RS19650 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D0T88_RS19650 PF02753 Pili assembly chaperone PapD, C-terminal domain D0T88_RS19660 PF08971 Glycogen synthesis protein D0T88_RS19665 PF07290 Protein of unknown function (DUF1449) D0T88_RS19670 PF01145 SPFH domain / Band 7 family D0T88_RS19670 PF15975 Flotillin D0T88_RS19685 PF01467 Cytidylyltransferase-like D0T88_RS19685 PF00294 pfkB family carbohydrate kinase D0T88_RS19690 PF08335 GlnD PII-uridylyltransferase D0T88_RS19690 PF03710 Glutamate-ammonia ligase adenylyltransferase D0T88_RS19695 PF01928 CYTH domain D0T88_RS19700 PF08239 Bacterial SH3 domain D0T88_RS19705 PF01966 HD domain D0T88_RS19705 PF01743 Poly A polymerase head domain D0T88_RS19705 PF12627 Probable RNA and SrmB- binding site of polymerase A D0T88_RS19710 PF02673 Bacitracin resistance protein BacA D0T88_RS19715 PF02152 Dihydroneopterin aldolase D0T88_RS19720 PF02660 Glycerol-3-phosphate acyltransferase D0T88_RS19725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS19725 PF03466 LysR substrate binding domain D0T88_RS19730 PF05681 Fumarate hydratase (Fumerase) D0T88_RS19735 PF05683 Fumarase C-terminus D0T88_RS19740 PF00939 Sodium:sulfate symporter transmembrane region D0T88_RS19745 PF00814 Glycoprotease family D0T88_RS19750 PF01165 Ribosomal protein S21 D0T88_RS19755 PF08275 DNA primase catalytic core, N-terminal domain D0T88_RS19755 PF08278 DNA primase DnaG DnaB-binding D0T88_RS19755 PF10410 DnaB-helicase binding domain of primase D0T88_RS19755 PF01807 CHC2 zinc finger D0T88_RS19760 PF04546 Sigma-70, non-essential region D0T88_RS19760 PF03979 Sigma-70 factor, region 1.1 D0T88_RS19760 PF04542 Sigma-70 region 2 D0T88_RS19760 PF00140 Sigma-70 factor, region 1.2 D0T88_RS19760 PF04539 Sigma-70 region 3 D0T88_RS19760 PF04545 Sigma-70, region 4 D0T88_RS19765 PF03167 Uracil DNA glycosylase superfamily D0T88_RS19775 PF04954 Siderophore-interacting protein D0T88_RS19775 PF08021 Siderophore-interacting FAD-binding domain D0T88_RS19780 PF03551 Transcriptional regulator PadR-like family D0T88_RS19785 PF08447 PAS fold D0T88_RS19785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0T88_RS19790 PF00202 Aminotransferase class-III D0T88_RS19795 PF01588 Putative tRNA binding domain D0T88_RS19800 PF00356 Bacterial regulatory proteins, lacI family D0T88_RS19805 PF02929 Beta galactosidase small chain D0T88_RS19805 PF00703 Glycosyl hydrolases family 2 D0T88_RS19805 PF02836 Glycosyl hydrolases family 2, TIM barrel domain D0T88_RS19805 PF02837 Glycosyl hydrolases family 2, sugar binding domain D0T88_RS19805 PF16353 Domain of unknown function(DUF4981) D0T88_RS19810 PF04074 YhcH/YjgK/YiaL D0T88_RS19815 PF13520 Amino acid permease D0T88_RS19825 PF01204 Trehalase D0T88_RS19830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D0T88_RS19830 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS19835 PF01381 Helix-turn-helix D0T88_RS19845 PF05175 Methyltransferase small domain D0T88_RS19850 PF01863 Protein of unknown function DUF45 D0T88_RS19855 PF02698 DUF218 domain D0T88_RS19860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D0T88_RS19865 PF03741 Integral membrane protein TerC family D0T88_RS19870 PF00375 Sodium:dicarboxylate symporter family D0T88_RS19875 PF10688 Bacterial inner membrane protein D0T88_RS19880 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus D0T88_RS19880 PF08666 SAF domain D0T88_RS19885 PF02614 Glucuronate isomerase D0T88_RS19890 PF07690 Major Facilitator Superfamily D0T88_RS19900 PF17271 TcfC Usher-like barrel domain D0T88_RS19900 PF15976 CS1-pili formation C-terminal D0T88_RS19900 PF16967 E-set like domain D0T88_RS19905 PF04449 CS1 type fimbrial major subunit D0T88_RS19915 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS19915 PF07729 FCD domain D0T88_RS19920 PF09335 SNARE associated Golgi protein D0T88_RS19925 PF13721 SecD export protein N-terminal TM region D0T88_RS19930 PF06476 Protein of unknown function (DUF1090) D0T88_RS19935 PF05957 Bacterial protein of unknown function (DUF883) D0T88_RS19940 PF07332 Putative Actinobacterial Holin-X, holin superfamily III D0T88_RS19945 PF13997 YqjK-like protein D0T88_RS19950 PF07681 DoxX D0T88_RS19955 PF13409 Glutathione S-transferase, N-terminal domain D0T88_RS19960 PF05656 Protein of unknown function (DUF805) D0T88_RS19965 PF05656 Protein of unknown function (DUF805) D0T88_RS19970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS19970 PF03466 LysR substrate binding domain D0T88_RS19975 PF02678 Pirin D0T88_RS19975 PF17954 Quercetinase C-terminal cupin domain D0T88_RS19985 PF03313 Serine dehydratase alpha chain D0T88_RS19995 PF03313 Serine dehydratase alpha chain D0T88_RS19995 PF03315 Serine dehydratase beta chain D0T88_RS20000 PF01042 Endoribonuclease L-PSP D0T88_RS20005 PF02901 Pyruvate formate lyase-like D0T88_RS20005 PF01228 Glycine radical D0T88_RS20010 PF00871 Acetokinase family D0T88_RS20015 PF03222 Tryptophan/tyrosine permease family D0T88_RS20020 PF00291 Pyridoxal-phosphate dependent enzyme D0T88_RS20025 PF03466 LysR substrate binding domain D0T88_RS20025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS20045 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS20045 PF01548 Transposase D0T88_RS20055 PF02595 Glycerate kinase family D0T88_RS20060 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D0T88_RS20060 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D0T88_RS20065 PF03328 HpcH/HpaI aldolase/citrate lyase family D0T88_RS20070 PF07690 Major Facilitator Superfamily D0T88_RS20075 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus D0T88_RS20075 PF08666 SAF domain D0T88_RS20080 PF15937 prlF antitoxin for toxin YhaV_toxin D0T88_RS20085 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system D0T88_RS20090 PF08220 DeoR-like helix-turn-helix domain D0T88_RS20090 PF00455 DeoR C terminal sensor domain D0T88_RS20095 PF08013 Tagatose 6 phosphate kinase D0T88_RS20100 PF03830 PTS system sorbose subfamily IIB component D0T88_RS20105 PF03609 PTS system sorbose-specific iic component D0T88_RS20110 PF03613 PTS system mannose/fructose/sorbose family IID component D0T88_RS20115 PF03610 PTS system fructose IIA component D0T88_RS20120 PF01979 Amidohydrolase family D0T88_RS20125 PF01380 SIS domain D0T88_RS20130 PF01116 Fructose-bisphosphate aldolase class-II D0T88_RS20135 PF03830 PTS system sorbose subfamily IIB component D0T88_RS20140 PF03609 PTS system sorbose-specific iic component D0T88_RS20145 PF03613 PTS system mannose/fructose/sorbose family IID component D0T88_RS20150 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D0T88_RS20155 PF00419 Fimbrial protein D0T88_RS20160 PF02753 Pili assembly chaperone PapD, C-terminal domain D0T88_RS20160 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D0T88_RS20165 PF13954 PapC N-terminal domain D0T88_RS20165 PF13953 PapC C-terminal domain D0T88_RS20165 PF00577 Outer membrane usher protein D0T88_RS20170 PF00419 Fimbrial protein D0T88_RS20175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D0T88_RS20180 PF04348 LppC putative lipoprotein D0T88_RS20185 PF02021 Uncharacterised protein family UPF0102 D0T88_RS20190 PF13580 SIS domain D0T88_RS20195 PF04972 BON domain D0T88_RS20200 PF03773 Predicted permease D0T88_RS20205 PF13460 NAD(P)H-binding D0T88_RS20210 PF01965 DJ-1/PfpI family D0T88_RS20220 PF01541 GIY-YIG catalytic domain D0T88_RS20225 PF13508 Acetyltransferase (GNAT) domain D0T88_RS20230 PF02036 SCP-2 sterol transfer family D0T88_RS20235 PF01136 Peptidase family U32 D0T88_RS20240 PF01136 Peptidase family U32 D0T88_RS20245 PF00296 Luciferase-like monooxygenase D0T88_RS20250 PF03222 Tryptophan/tyrosine permease family D0T88_RS20255 PF00271 Helicase conserved C-terminal domain D0T88_RS20255 PF12343 Cold shock protein DEAD box A D0T88_RS20255 PF03880 DbpA RNA binding domain D0T88_RS20255 PF00270 DEAD/DEAH box helicase D0T88_RS20265 PF13181 Tetratricopeptide repeat D0T88_RS20265 PF07719 Tetratricopeptide repeat D0T88_RS20270 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D0T88_RS20270 PF01138 3' exoribonuclease family, domain 1 D0T88_RS20270 PF03725 3' exoribonuclease family, domain 2 D0T88_RS20270 PF00575 S1 RNA binding domain D0T88_RS20270 PF00013 KH domain D0T88_RS20275 PF00312 Ribosomal protein S15 D0T88_RS20280 PF01509 TruB family pseudouridylate synthase (N terminal domain) D0T88_RS20280 PF16198 tRNA pseudouridylate synthase B C-terminal domain D0T88_RS20280 PF09157 Pseudouridine synthase II TruB, C-terminal D0T88_RS20285 PF02033 Ribosome-binding factor A D0T88_RS20290 PF04760 Translation initiation factor IF-2, N-terminal region D0T88_RS20290 PF08364 Bacterial translation initiation factor IF-2 associated region D0T88_RS20290 PF00009 Elongation factor Tu GTP binding domain D0T88_RS20290 PF11987 Translation-initiation factor 2 D0T88_RS20295 PF08529 NusA N-terminal domain D0T88_RS20295 PF00575 S1 RNA binding domain D0T88_RS20295 PF13184 NusA-like KH domain D0T88_RS20300 PF17384 RimP C-terminal SH3 domain D0T88_RS20300 PF02576 RimP N-terminal domain D0T88_RS20310 PF00764 Arginosuccinate synthase D0T88_RS20315 PF00884 Sulfatase D0T88_RS20325 PF03840 Preprotein translocase SecG subunit D0T88_RS20330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D0T88_RS20330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D0T88_RS20330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D0T88_RS20330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D0T88_RS20335 PF00809 Pterin binding enzyme D0T88_RS20340 PF01434 Peptidase family M41 D0T88_RS20340 PF17862 AAA+ lid domain D0T88_RS20340 PF00004 ATPase family associated with various cellular activities (AAA) D0T88_RS20340 PF06480 FtsH Extracellular D0T88_RS20345 PF01728 FtsJ-like methyltransferase D0T88_RS20350 PF01985 CRS1 / YhbY (CRM) domain D0T88_RS20355 PF03449 Transcription elongation factor, N-terminal D0T88_RS20355 PF01272 Transcription elongation factor, GreA/GreB, C-term D0T88_RS20360 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D0T88_RS20365 PF01018 GTP1/OBG D0T88_RS20365 PF01926 50S ribosome-binding GTPase D0T88_RS20370 PF00892 EamA-like transporter family D0T88_RS20375 PF01016 Ribosomal L27 protein D0T88_RS20380 PF00829 Ribosomal prokaryotic L21 protein D0T88_RS20385 PF00348 Polyprenyl synthetase D0T88_RS20390 PF13693 Winged helix-turn-helix DNA-binding D0T88_RS20395 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D0T88_RS20400 PF01722 BolA-like protein D0T88_RS20405 PF13466 STAS domain D0T88_RS20410 PF05494 MlaC protein D0T88_RS20415 PF02470 MlaD protein D0T88_RS20420 PF02405 Permease MlaE D0T88_RS20425 PF00005 ABC transporter D0T88_RS20430 PF01699 Sodium/calcium exchanger protein D0T88_RS20435 PF00571 CBS domain D0T88_RS20435 PF01380 SIS domain D0T88_RS20445 PF06835 Lipopolysaccharide-assembly, LptC-related D0T88_RS20450 PF03968 OstA-like protein D0T88_RS20455 PF00005 ABC transporter D0T88_RS20455 PF12399 Branched-chain amino acid ATP-binding cassette transporter D0T88_RS20460 PF00309 Sigma-54 factor, Activator interacting domain (AID) D0T88_RS20460 PF04552 Sigma-54, DNA binding domain D0T88_RS20460 PF04963 Sigma-54 factor, core binding domain D0T88_RS20465 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D0T88_RS20470 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0T88_RS20475 PF03668 P-loop ATPase protein family D0T88_RS20480 PF00381 PTS HPr component phosphorylation site D0T88_RS20485 PF10707 PhoP regulatory network protein YrbL D0T88_RS20490 PF00912 Transglycosylase D0T88_RS20500 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS20500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS20500 PF01627 Hpt domain D0T88_RS20500 PF00989 PAS fold D0T88_RS20500 PF00072 Response regulator receiver domain D0T88_RS20500 PF18415 Histidine kinase receptor ArcB trans-membrane domain D0T88_RS20505 PF04055 Radical SAM superfamily D0T88_RS20505 PF16199 Radical_SAM C-terminal domain D0T88_RS20510 PF01493 GXGXG motif D0T88_RS20510 PF01645 Conserved region in glutamate synthase D0T88_RS20510 PF00310 Glutamine amidotransferases class-II D0T88_RS20510 PF04898 Glutamate synthase central domain D0T88_RS20515 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS20515 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D0T88_RS20520 PF17761 DUF1016 N-terminal domain D0T88_RS20520 PF06250 YhcG PDDEXK nuclease domain D0T88_RS20525 PF04074 YhcH/YjgK/YiaL D0T88_RS20530 PF00480 ROK family D0T88_RS20535 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase D0T88_RS20540 PF07690 Major Facilitator Superfamily D0T88_RS20545 PF00701 Dihydrodipicolinate synthetase family D0T88_RS20550 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS20550 PF07729 FCD domain D0T88_RS20555 PF03606 C4-dicarboxylate anaerobic carrier D0T88_RS20560 PF04386 Stringent starvation protein B D0T88_RS20565 PF00043 Glutathione S-transferase, C-terminal domain D0T88_RS20565 PF02798 Glutathione S-transferase, N-terminal domain D0T88_RS20570 PF00380 Ribosomal protein S9/S16 D0T88_RS20575 PF00572 Ribosomal protein L13 D0T88_RS20580 PF03969 AFG1-like ATPase D0T88_RS20585 PF06295 Protein of unknown function (DUF1043) D0T88_RS20590 PF00595 PDZ domain D0T88_RS20590 PF13180 PDZ domain D0T88_RS20595 PF13180 PDZ domain D0T88_RS20600 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D0T88_RS20600 PF00056 lactate/malate dehydrogenase, NAD binding domain D0T88_RS20605 PF02863 Arginine repressor, C-terminal domain D0T88_RS20605 PF01316 Arginine repressor, DNA binding domain D0T88_RS20610 PF07338 Protein of unknown function (DUF1471) D0T88_RS20615 PF01337 Barstar (barnase inhibitor) D0T88_RS20620 PF04632 Fusaric acid resistance protein family D0T88_RS20625 PF13533 Biotin-lipoyl like D0T88_RS20630 PF07869 Protein of unknown function (DUF1656) D0T88_RS20635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS20635 PF03466 LysR substrate binding domain D0T88_RS20640 PF01523 Putative modulator of DNA gyrase D0T88_RS20645 PF13502 AsmA-like C-terminal region D0T88_RS20645 PF13116 Protein of unknown function D0T88_RS20650 PF10150 Ribonuclease E/G family D0T88_RS20650 PF00575 S1 RNA binding domain D0T88_RS20655 PF02545 Maf-like protein D0T88_RS20660 PF04093 rod shape-determining protein MreD D0T88_RS20665 PF04085 rod shape-determining protein MreC D0T88_RS20675 PF00563 EAL domain D0T88_RS20675 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS20675 PF17157 Gammaproteobacterial periplasmic sensor domain D0T88_RS20680 PF08240 Alcohol dehydrogenase GroES-like domain D0T88_RS20680 PF00107 Zinc-binding dehydrogenase D0T88_RS20685 PF00364 Biotin-requiring enzyme D0T88_RS20690 PF02785 Biotin carboxylase C-terminal domain D0T88_RS20690 PF00289 Biotin carboxylase, N-terminal domain D0T88_RS20690 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D0T88_RS20695 PF06196 Protein of unknown function (DUF997) D0T88_RS20700 PF00474 Sodium:solute symporter family D0T88_RS20710 PF01207 Dihydrouridine synthase (Dus) D0T88_RS20715 PF02954 Bacterial regulatory protein, Fis family D0T88_RS20720 PF01555 DNA methylase D0T88_RS20725 PF10831 Protein of unknown function (DUF2556) D0T88_RS20730 PF08361 MAATS-type transcriptional repressor, C-terminal region D0T88_RS20730 PF00440 Bacterial regulatory proteins, tetR family D0T88_RS20735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0T88_RS20735 PF00529 HlyD membrane-fusion protein of T1SS D0T88_RS20740 PF00873 AcrB/AcrD/AcrF family D0T88_RS20750 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0T88_RS20755 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS20760 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS20765 PF00005 ABC transporter D0T88_RS20805 PF00132 Bacterial transferase hexapeptide (six repeats) D0T88_RS20810 PF07369 Protein of unknown function (DUF1488) D0T88_RS20815 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D0T88_RS20815 PF01488 Shikimate / quinate 5-dehydrogenase D0T88_RS20815 PF08501 Shikimate dehydrogenase substrate binding domain D0T88_RS20820 PF01300 Telomere recombination D0T88_RS20825 PF01396 Topoisomerase DNA binding C4 zinc finger D0T88_RS20830 PF04361 Protein of unknown function (DUF494) D0T88_RS20835 PF02481 DNA recombination-mediator protein A D0T88_RS20835 PF17782 DprA winged helix domain D0T88_RS20840 PF01327 Polypeptide deformylase D0T88_RS20845 PF00551 Formyl transferase D0T88_RS20845 PF02911 Formyl transferase, C-terminal domain D0T88_RS20850 PF01189 16S rRNA methyltransferase RsmB/F D0T88_RS20850 PF01029 NusB family D0T88_RS20855 PF02254 TrkA-N domain D0T88_RS20855 PF02080 TrkA-C domain D0T88_RS20860 PF01741 Large-conductance mechanosensitive channel, MscL D0T88_RS20865 PF03889 Alternative ribosome-rescue factor A D0T88_RS20870 PF13411 MerR HTH family regulatory protein D0T88_RS20875 PF09350 Domain of unknown function (DUF1992) D0T88_RS20880 PF01196 Ribosomal protein L17 D0T88_RS20885 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D0T88_RS20885 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D0T88_RS20885 PF01000 RNA polymerase Rpb3/RpoA insert domain D0T88_RS20890 PF01479 S4 domain D0T88_RS20890 PF00163 Ribosomal protein S4/S9 N-terminal domain D0T88_RS20895 PF00411 Ribosomal protein S11 D0T88_RS20900 PF00416 Ribosomal protein S13/S18 D0T88_RS20905 PF00444 Ribosomal protein L36 D0T88_RS20910 PF00344 SecY translocase D0T88_RS20915 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D0T88_RS20920 PF00327 Ribosomal protein L30p/L7e D0T88_RS20925 PF03719 Ribosomal protein S5, C-terminal domain D0T88_RS20925 PF00333 Ribosomal protein S5, N-terminal domain D0T88_RS20930 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D0T88_RS20935 PF00347 Ribosomal protein L6 D0T88_RS20940 PF00410 Ribosomal protein S8 D0T88_RS20945 PF00253 Ribosomal protein S14p/S29e D0T88_RS20950 PF00673 ribosomal L5P family C-terminus D0T88_RS20950 PF00281 Ribosomal protein L5 D0T88_RS20955 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D0T88_RS20955 PF00467 KOW motif D0T88_RS20960 PF00238 Ribosomal protein L14p/L23e D0T88_RS20965 PF00366 Ribosomal protein S17 D0T88_RS20970 PF00831 Ribosomal L29 protein D0T88_RS20975 PF00252 Ribosomal protein L16p/L10e D0T88_RS20980 PF07650 KH domain D0T88_RS20980 PF00189 Ribosomal protein S3, C-terminal domain D0T88_RS20985 PF00237 Ribosomal protein L22p/L17e D0T88_RS20990 PF00203 Ribosomal protein S19 D0T88_RS20995 PF03947 Ribosomal Proteins L2, C-terminal domain D0T88_RS20995 PF00181 Ribosomal Proteins L2, RNA binding domain D0T88_RS21000 PF00276 Ribosomal protein L23 D0T88_RS21005 PF00573 Ribosomal protein L4/L1 family D0T88_RS21010 PF00297 Ribosomal protein L3 D0T88_RS21015 PF00338 Ribosomal protein S10p/S20e D0T88_RS21020 PF01478 Type IV leader peptidase family D0T88_RS21025 PF00210 Ferritin-like domain D0T88_RS21030 PF04324 BFD-like [2Fe-2S] binding domain D0T88_RS21035 PF03143 Elongation factor Tu C-terminal domain D0T88_RS21035 PF03144 Elongation factor Tu domain 2 D0T88_RS21035 PF00009 Elongation factor Tu GTP binding domain D0T88_RS21040 PF14492 Elongation Factor G, domain II D0T88_RS21040 PF00679 Elongation factor G C-terminus D0T88_RS21040 PF03764 Elongation factor G, domain IV D0T88_RS21040 PF03144 Elongation factor Tu domain 2 D0T88_RS21040 PF00009 Elongation factor Tu GTP binding domain D0T88_RS21045 PF00177 Ribosomal protein S7p/S5e D0T88_RS21050 PF00164 Ribosomal protein S12/S23 D0T88_RS21055 PF04077 DsrH like protein D0T88_RS21060 PF02635 DsrE/DsrF-like family D0T88_RS21065 PF02635 DsrE/DsrF-like family D0T88_RS21070 PF13309 HTH domain D0T88_RS21070 PF08348 YheO-like PAS domain D0T88_RS21075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D0T88_RS21075 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D0T88_RS21080 PF04102 SlyX D0T88_RS21085 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D0T88_RS21090 PF09526 Probable metal-binding protein (DUF2387) D0T88_RS21095 PF00999 Sodium/hydrogen exchanger family D0T88_RS21095 PF02254 TrkA-N domain D0T88_RS21100 PF02525 Flavodoxin-like fold D0T88_RS21105 PF12848 ABC transporter D0T88_RS21105 PF00005 ABC transporter D0T88_RS21110 PF00561 alpha/beta hydrolase fold D0T88_RS21115 PF06794 Uncharacterised protein family (UPF0270) D0T88_RS21120 PF00485 Phosphoribulokinase / Uridine kinase family D0T88_RS21125 PF02566 OsmC-like protein D0T88_RS21130 PF00027 Cyclic nucleotide-binding domain D0T88_RS21130 PF13545 Crp-like helix-turn-helix domain D0T88_RS21135 PF12805 FUSC-like inner membrane protein yccS D0T88_RS21140 PF00202 Aminotransferase class-III D0T88_RS21145 PF00117 Glutamine amidotransferase class-I D0T88_RS21150 PF02661 Fic/DOC family D0T88_RS21155 PF10832 Protein of unknown function (DUF2559) D0T88_RS21160 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D0T88_RS21165 PF07690 Major Facilitator Superfamily D0T88_RS21170 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D0T88_RS21170 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D0T88_RS21170 PF04324 BFD-like [2Fe-2S] binding domain D0T88_RS21170 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS21170 PF18267 Rubredoxin NAD+ reductase C-terminal domain D0T88_RS21175 PF13806 Rieske-like [2Fe-2S] domain D0T88_RS21180 PF01226 Formate/nitrite transporter D0T88_RS21185 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D0T88_RS21185 PF14824 Sirohaem biosynthesis protein central D0T88_RS21185 PF10414 Sirohaem synthase dimerisation region D0T88_RS21190 PF13978 Protein of unknown function (DUF4223) D0T88_RS21195 PF13520 Amino acid permease D0T88_RS21200 PF01380 SIS domain D0T88_RS21205 PF01261 Xylose isomerase-like TIM barrel D0T88_RS21210 PF00294 pfkB family carbohydrate kinase D0T88_RS21215 PF07702 UTRA domain D0T88_RS21215 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS21220 PF00155 Aminotransferase class I and II D0T88_RS21225 PF10797 Protein of unknown function D0T88_RS21230 PF10941 Protein of unknown function DUF2620 D0T88_RS21235 PF02126 Phosphotriesterase family D0T88_RS21240 PF01676 Metalloenzyme superfamily D0T88_RS21245 PF01168 Alanine racemase, N-terminal domain D0T88_RS21255 PF14502 Helix-turn-helix domain D0T88_RS21255 PF14503 YhfZ C-terminal domain D0T88_RS21260 PF00579 tRNA synthetases class I (W and Y) D0T88_RS21265 PF13419 Haloacid dehalogenase-like hydrolase D0T88_RS21270 PF00834 Ribulose-phosphate 3 epimerase family D0T88_RS21275 PF02086 D12 class N6 adenine-specific DNA methyltransferase D0T88_RS21280 PF05036 Sporulation related domain D0T88_RS21285 PF01761 3-dehydroquinate synthase D0T88_RS21290 PF01202 Shikimate kinase D0T88_RS21295 PF00263 Bacterial type II and III secretion system protein D0T88_RS21295 PF03958 Bacterial type II/III secretion system short domain D0T88_RS21300 PF10748 DNA utilization proteins HofP D0T88_RS21310 PF05137 Fimbrial assembly protein (PilN) D0T88_RS21320 PF00905 Penicillin binding protein transpeptidase domain D0T88_RS21320 PF17092 Penicillin-binding protein OB-like domain D0T88_RS21320 PF00912 Transglycosylase D0T88_RS21325 PF00293 NUDIX domain D0T88_RS21330 PF07095 Intracellular growth attenuator protein IgaA D0T88_RS21335 PF13419 Haloacid dehalogenase-like hydrolase D0T88_RS21340 PF01479 S4 domain D0T88_RS21345 PF01430 Hsp33 protein D0T88_RS21350 PF13687 Domain of unknown function (DUF4153) D0T88_RS21355 PF01293 Phosphoenolpyruvate carboxykinase D0T88_RS21360 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS21360 PF00672 HAMP domain D0T88_RS21360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS21365 PF00072 Response regulator receiver domain D0T88_RS21365 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS21370 PF01272 Transcription elongation factor, GreA/GreB, C-term D0T88_RS21370 PF03449 Transcription elongation factor, N-terminal D0T88_RS21375 PF17674 HHH domain D0T88_RS21375 PF00575 S1 RNA binding domain D0T88_RS21375 PF09371 Tex-like protein N-terminal domain D0T88_RS21375 PF16921 Tex protein YqgF-like domain D0T88_RS21380 PF04023 FeoA domain D0T88_RS21385 PF17910 FeoB cytosolic helical domain D0T88_RS21385 PF07670 Nucleoside recognition D0T88_RS21385 PF07664 Ferrous iron transport protein B C terminus D0T88_RS21385 PF02421 Ferrous iron transport protein B D0T88_RS21390 PF09012 FeoC like transcriptional regulator D0T88_RS21395 PF04754 Putative transposase, YhgA-like D0T88_RS21400 PF00561 alpha/beta hydrolase fold D0T88_RS21405 PF00156 Phosphoribosyl transferase domain D0T88_RS21410 PF01106 NifU-like domain D0T88_RS21410 PF01521 Iron-sulphur cluster biosynthesis D0T88_RS21415 PF02447 GntP family permease D0T88_RS21420 PF02446 4-alpha-glucanotransferase D0T88_RS21425 PF00343 Carbohydrate phosphorylase D0T88_RS21430 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS21430 PF17874 MalT-like TPR region D0T88_RS21435 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain D0T88_RS21435 PF01137 RNA 3'-terminal phosphate cyclase D0T88_RS21440 PF01139 tRNA-splicing ligase RtcB D0T88_RS21445 PF00158 Sigma-54 interaction domain D0T88_RS21445 PF06956 Regulator of RNA terminal phosphate cyclase D0T88_RS21450 PF00455 DeoR C terminal sensor domain D0T88_RS21450 PF08220 DeoR-like helix-turn-helix domain D0T88_RS21455 PF01694 Rhomboid family D0T88_RS21455 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease D0T88_RS21460 PF00581 Rhodanese-like domain D0T88_RS21465 PF01266 FAD dependent oxidoreductase D0T88_RS21465 PF16901 C-terminal domain of alpha-glycerophosphate oxidase D0T88_RS21490 PF00343 Carbohydrate phosphorylase D0T88_RS21495 PF08323 Starch synthase catalytic domain D0T88_RS21495 PF00534 Glycosyl transferases group 1 D0T88_RS21500 PF00483 Nucleotidyl transferase D0T88_RS21505 PF00128 Alpha amylase, catalytic domain D0T88_RS21505 PF18390 Glycogen debranching enzyme C-terminal domain D0T88_RS21505 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D0T88_RS21510 PF00128 Alpha amylase, catalytic domain D0T88_RS21510 PF02806 Alpha amylase, C-terminal all-beta domain D0T88_RS21510 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D0T88_RS21515 PF01118 Semialdehyde dehydrogenase, NAD binding domain D0T88_RS21515 PF02774 Semialdehyde dehydrogenase, dimerisation domain D0T88_RS21520 PF01914 MarC family integral membrane protein D0T88_RS21530 PF00270 DEAD/DEAH box helicase D0T88_RS21530 PF09382 RQC domain D0T88_RS21530 PF00271 Helicase conserved C-terminal domain D0T88_RS21530 PF16124 RecQ zinc-binding D0T88_RS21530 PF00570 HRDC domain D0T88_RS21535 PF02447 GntP family permease D0T88_RS21540 PF01202 Shikimate kinase D0T88_RS21545 PF00356 Bacterial regulatory proteins, lacI family D0T88_RS21545 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D0T88_RS21550 PF02678 Pirin D0T88_RS21550 PF17954 Quercetinase C-terminal cupin domain D0T88_RS21555 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D0T88_RS21555 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D0T88_RS21560 PF00583 Acetyltransferase (GNAT) family D0T88_RS21565 PF05638 Type VI secretion system effector, Hcp D0T88_RS21580 PF15567 Immunity protein 35 D0T88_RS21590 PF10956 Protein of unknown function (DUF2756) D0T88_RS21595 PF03009 Glycerophosphoryl diester phosphodiesterase family D0T88_RS21600 PF17912 MalK OB fold domain D0T88_RS21600 PF00005 ABC transporter D0T88_RS21605 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS21610 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS21615 PF13416 Bacterial extracellular solute-binding protein D0T88_RS21620 PF00005 ABC transporter D0T88_RS21625 PF00005 ABC transporter D0T88_RS21625 PF12399 Branched-chain amino acid ATP-binding cassette transporter D0T88_RS21630 PF02653 Branched-chain amino acid transport system / permease component D0T88_RS21630 PF11862 Domain of unknown function (DUF3382) D0T88_RS21635 PF02653 Branched-chain amino acid transport system / permease component D0T88_RS21640 PF13458 Periplasmic binding protein D0T88_RS21645 PF12568 Acetyltransferase (GNAT) domain, PanZ D0T88_RS21650 PF13458 Periplasmic binding protein D0T88_RS21655 PF04545 Sigma-70, region 4 D0T88_RS21655 PF04542 Sigma-70 region 2 D0T88_RS21660 PF02687 FtsX-like permease family D0T88_RS21660 PF18075 FtsX extracellular domain D0T88_RS21665 PF00005 ABC transporter D0T88_RS21670 PF00448 SRP54-type protein, GTPase domain D0T88_RS21670 PF02881 SRP54-type protein, helical bundle domain D0T88_RS21680 PF06611 Protein of unknown function (DUF1145) D0T88_RS21685 PF10694 Protein of unknown function (DUF2500) D0T88_RS21690 PF07947 YhhN family D0T88_RS21695 PF00403 Heavy-metal-associated domain D0T88_RS21700 PF01206 Sulfurtransferase TusA D0T88_RS21705 PF02592 Putative vitamin uptake transporter D0T88_RS21710 PF08786 DcrB D0T88_RS21715 PF07690 Major Facilitator Superfamily D0T88_RS21720 PF01594 AI-2E family transporter D0T88_RS21725 PF01648 4'-phosphopantetheinyl transferase superfamily D0T88_RS21730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0T88_RS21735 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS21740 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS21745 PF00005 ABC transporter D0T88_RS21750 PF00005 ABC transporter D0T88_RS21755 PF08753 NikR C terminal nickel binding domain D0T88_RS21755 PF01402 Ribbon-helix-helix protein, copG family D0T88_RS21760 PF07702 UTRA domain D0T88_RS21760 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS21770 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0T88_RS21775 PF03611 PTS system sugar-specific permease component D0T88_RS21785 PF00381 PTS HPr component phosphorylation site D0T88_RS21790 PF01116 Fructose-bisphosphate aldolase class-II D0T88_RS21810 PF00005 ABC transporter D0T88_RS21815 PF13533 Biotin-lipoyl like D0T88_RS21820 PF13258 Domain of unknown function (DUF4049) D0T88_RS21830 PF10951 Protein of unknown function (DUF2776) D0T88_RS21840 PF01384 Phosphate transporter family D0T88_RS21845 PF10625 Universal stress protein B (UspB) D0T88_RS21850 PF00582 Universal stress protein family D0T88_RS21855 PF00854 POT family D0T88_RS21860 PF04445 Putative SAM-dependent methyltransferase D0T88_RS21865 PF01432 Peptidase family M3 D0T88_RS21870 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ D0T88_RS21875 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0T88_RS21875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D0T88_RS21890 PF01022 Bacterial regulatory protein, arsR family D0T88_RS21895 PF02040 Arsenical pump membrane protein D0T88_RS21900 PF03960 ArsC family D0T88_RS21920 PF03843 Outer membrane lipoprotein Slp family D0T88_RS21925 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS21930 PF02308 MgtC family D0T88_RS21935 PF06411 HdeA/HdeB family D0T88_RS21940 PF06411 HdeA/HdeB family D0T88_RS21945 PF03729 Short repeat of unknown function (DUF308) D0T88_RS21950 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS21960 PF00529 HlyD membrane-fusion protein of T1SS D0T88_RS21960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0T88_RS21965 PF00873 AcrB/AcrD/AcrF family D0T88_RS21970 PF12833 Helix-turn-helix domain D0T88_RS21975 PF12833 Helix-turn-helix domain D0T88_RS21980 PF00282 Pyridoxal-dependent decarboxylase conserved domain D0T88_RS21985 PF03150 Di-haem cytochrome c peroxidase D0T88_RS21985 PF14376 Haem-binding domain D0T88_RS21985 PF00034 Cytochrome c D0T88_RS21990 PF01204 Trehalase D0T88_RS21995 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS22000 PF03466 LysR substrate binding domain D0T88_RS22000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS22005 PF03631 Virulence factor BrkB D0T88_RS22010 PF00083 Sugar (and other) transporter D0T88_RS22010 PF07690 Major Facilitator Superfamily D0T88_RS22015 PF05170 AsmA family D0T88_RS22020 PF00563 EAL domain D0T88_RS22025 PF00294 pfkB family carbohydrate kinase D0T88_RS22030 PF05193 Peptidase M16 inactive domain D0T88_RS22030 PF00675 Insulinase (Peptidase family M16) D0T88_RS22035 PF00375 Sodium:dicarboxylate symporter family D0T88_RS22040 PF00990 Diguanylate cyclase, GGDEF domain D0T88_RS22040 PF17154 Gammaproteobacterial periplasmic sensor domain D0T88_RS22040 PF00563 EAL domain D0T88_RS22040 PF00672 HAMP domain D0T88_RS22045 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) D0T88_RS22050 PF01270 Glycosyl hydrolases family 8 D0T88_RS22055 PF03170 Bacterial cellulose synthase subunit D0T88_RS22060 PF03552 Cellulose synthase D0T88_RS22060 PF00535 Glycosyl transferase family 2 D0T88_RS22060 PF07238 PilZ domain D0T88_RS22065 PF06564 Cellulose biosynthesis protein BcsQ D0T88_RS22070 PF10945 Cellulose biosynthesis protein BcsR D0T88_RS22075 PF10995 Cellulose biosynthesis GIL D0T88_RS22080 PF11120 Cellulose biosynthesis protein BcsF D0T88_RS22085 PF11658 Cellulose biosynthesis protein BcsG D0T88_RS22090 PF13940 Toxin Ldr, type I toxin-antitoxin system D0T88_RS22095 PF13940 Toxin Ldr, type I toxin-antitoxin system D0T88_RS22100 PF13940 Toxin Ldr, type I toxin-antitoxin system D0T88_RS22105 PF13940 Toxin Ldr, type I toxin-antitoxin system D0T88_RS22110 PF03222 Tryptophan/tyrosine permease family D0T88_RS22115 PF00005 ABC transporter D0T88_RS22115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0T88_RS22120 PF00005 ABC transporter D0T88_RS22120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0T88_RS22125 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS22125 PF12911 N-terminal TM domain of oligopeptide transport permease C D0T88_RS22130 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS22135 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0T88_RS22145 PF08019 Phosphoethanolamine transferase EptA/EptB D0T88_RS22145 PF00884 Sulfatase D0T88_RS22150 PF00419 Fimbrial protein D0T88_RS22155 PF00419 Fimbrial protein D0T88_RS22160 PF13953 PapC C-terminal domain D0T88_RS22160 PF13954 PapC N-terminal domain D0T88_RS22160 PF00577 Outer membrane usher protein D0T88_RS22165 PF02753 Pili assembly chaperone PapD, C-terminal domain D0T88_RS22165 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D0T88_RS22170 PF00419 Fimbrial protein D0T88_RS22175 PF07690 Major Facilitator Superfamily D0T88_RS22180 PF03797 Autotransporter beta-domain D0T88_RS22185 PF03352 Methyladenine glycosylase D0T88_RS22190 PF00583 Acetyltransferase (GNAT) family D0T88_RS22195 PF01568 Molydopterin dinucleotide binding domain D0T88_RS22195 PF00384 Molybdopterin oxidoreductase D0T88_RS22195 PF18364 Molybdopterin oxidoreductase N-terminal domain D0T88_RS22200 PF00691 OmpA family D0T88_RS22200 PF13488 Glycine zipper D0T88_RS22205 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D0T88_RS22205 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D0T88_RS22210 PF11254 Protein of unknown function (DUF3053) D0T88_RS22215 PF01381 Helix-turn-helix D0T88_RS22220 PF00313 'Cold-shock' DNA-binding domain D0T88_RS22225 PF01848 Hok/gef family D0T88_RS22230 PF05746 DALR anticodon binding domain D0T88_RS22230 PF02092 Glycyl-tRNA synthetase beta subunit D0T88_RS22235 PF02091 Glycyl-tRNA synthetase alpha subunit D0T88_RS22240 PF13983 YsaB-like lipoprotein D0T88_RS22245 PF01757 Acyltransferase family D0T88_RS22250 PF05360 yiaA/B two helix domain D0T88_RS22255 PF05360 yiaA/B two helix domain D0T88_RS22260 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D0T88_RS22260 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D0T88_RS22270 PF13407 Periplasmic binding protein domain D0T88_RS22275 PF00005 ABC transporter D0T88_RS22280 PF02653 Branched-chain amino acid transport system / permease component D0T88_RS22285 PF12833 Helix-turn-helix domain D0T88_RS22290 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase D0T88_RS22295 PF00128 Alpha amylase, catalytic domain D0T88_RS22300 PF00155 Aminotransferase class I and II D0T88_RS22305 PF13247 4Fe-4S dicluster domain D0T88_RS22310 PF01614 Bacterial transcriptional regulator D0T88_RS22310 PF09339 IclR helix-turn-helix domain D0T88_RS22315 PF02615 Malate/L-lactate dehydrogenase D0T88_RS22320 PF04074 YhcH/YjgK/YiaL D0T88_RS22325 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D0T88_RS22330 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D0T88_RS22335 PF03480 Bacterial extracellular solute-binding protein, family 7 D0T88_RS22340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D0T88_RS22340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D0T88_RS22345 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D0T88_RS22350 PF01261 Xylose isomerase-like TIM barrel D0T88_RS22355 PF00596 Class II Aldolase and Adducin N-terminal domain D0T88_RS22365 PF06629 MltA-interacting protein MipA D0T88_RS22370 PF03466 LysR substrate binding domain D0T88_RS22370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS22375 PF00529 HlyD membrane-fusion protein of T1SS D0T88_RS22375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0T88_RS22380 PF11742 Protein of unknown function (DUF3302) D0T88_RS22390 PF00171 Aldehyde dehydrogenase family D0T88_RS22395 PF00465 Iron-containing alcohol dehydrogenase D0T88_RS22400 PF09106 Elongation factor SelB, winged helix D0T88_RS22400 PF03144 Elongation factor Tu domain 2 D0T88_RS22400 PF09107 Elongation factor SelB, winged helix D0T88_RS22400 PF00009 Elongation factor Tu GTP binding domain D0T88_RS22405 PF12390 Selenocysteine synthase N terminal D0T88_RS22405 PF03841 L-seryl-tRNA selenium transferase D0T88_RS22410 PF00043 Glutathione S-transferase, C-terminal domain D0T88_RS22410 PF13417 Glutathione S-transferase, N-terminal domain D0T88_RS22420 PF15631 NTF2 fold immunity protein D0T88_RS22425 PF03130 PBS lyase HEAT-like repeat D0T88_RS22440 PF15596 Immunity protein 57 D0T88_RS22445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0T88_RS22445 PF00529 HlyD membrane-fusion protein of T1SS D0T88_RS22450 PF11742 Protein of unknown function (DUF3302) D0T88_RS22455 PF02378 Phosphotransferase system, EIIC D0T88_RS22455 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0T88_RS22455 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0T88_RS22460 PF01232 Mannitol dehydrogenase Rossmann domain D0T88_RS22460 PF08125 Mannitol dehydrogenase C-terminal domain D0T88_RS22465 PF05068 Mannitol repressor D0T88_RS22475 PF10928 Protein of unknown function (DUF2810) D0T88_RS22480 PF11622 Protein of unknown function (DUF3251) D0T88_RS22485 PF03895 YadA-like membrane anchor domain D0T88_RS22485 PF05658 Head domain of trimeric autotransporter adhesin D0T88_RS22485 PF05662 Coiled stalk of trimeric autotransporter adhesin D0T88_RS22485 PF13018 Extended Signal Peptide of Type V secretion system D0T88_RS22490 PF02652 L-lactate permease D0T88_RS22495 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS22495 PF07729 FCD domain D0T88_RS22500 PF01070 FMN-dependent dehydrogenase D0T88_RS22505 PF00588 SpoU rRNA Methylase family D0T88_RS22510 PF00132 Bacterial transferase hexapeptide (six repeats) D0T88_RS22510 PF06426 Serine acetyltransferase, N-terminal D0T88_RS22515 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D0T88_RS22515 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D0T88_RS22520 PF02556 Preprotein translocase subunit SecB D0T88_RS22525 PF00462 Glutaredoxin D0T88_RS22530 PF00581 Rhodanese-like domain D0T88_RS22535 PF06415 BPG-independent PGAM N-terminus (iPGM_N) D0T88_RS22535 PF01676 Metalloenzyme superfamily D0T88_RS22540 PF01551 Peptidase family M23 D0T88_RS22545 PF04748 Divergent polysaccharide deacetylase D0T88_RS22550 PF00535 Glycosyl transferase family 2 D0T88_RS22555 PF00107 Zinc-binding dehydrogenase D0T88_RS22555 PF08240 Alcohol dehydrogenase GroES-like domain D0T88_RS22560 PF00155 Aminotransferase class I and II D0T88_RS22565 PF01370 NAD dependent epimerase/dehydratase family D0T88_RS22570 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D0T88_RS22575 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D0T88_RS22580 PF04932 O-Antigen ligase D0T88_RS22585 PF00535 Glycosyl transferase family 2 D0T88_RS22590 PF08437 Glycosyl transferase family 8 C-terminal D0T88_RS22590 PF01501 Glycosyl transferase family 8 D0T88_RS22595 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) D0T88_RS22600 PF01501 Glycosyl transferase family 8 D0T88_RS22600 PF08437 Glycosyl transferase family 8 C-terminal D0T88_RS22605 PF08437 Glycosyl transferase family 8 C-terminal D0T88_RS22605 PF01501 Glycosyl transferase family 8 D0T88_RS22615 PF00534 Glycosyl transferases group 1 D0T88_RS22615 PF13439 Glycosyltransferase Family 4 D0T88_RS22620 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D0T88_RS22625 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D0T88_RS22630 PF01467 Cytidylyltransferase-like D0T88_RS22635 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D0T88_RS22635 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D0T88_RS22635 PF06827 Zinc finger found in FPG and IleRS D0T88_RS22640 PF00471 Ribosomal protein L33 D0T88_RS22645 PF00830 Ribosomal L28 family D0T88_RS22650 PF04002 RadC-like JAB domain D0T88_RS22655 PF02441 Flavoprotein D0T88_RS22655 PF04127 DNA / pantothenate metabolism flavoprotein D0T88_RS22660 PF00692 dUTPase D0T88_RS22665 PF00440 Bacterial regulatory proteins, tetR family D0T88_RS22670 PF00156 Phosphoribosyl transferase domain D0T88_RS22675 PF03725 3' exoribonuclease family, domain 2 D0T88_RS22675 PF01138 3' exoribonuclease family, domain 1 D0T88_RS22680 PF03755 YicC-like family, N-terminal region D0T88_RS22680 PF08340 Domain of unknown function (DUF1732) D0T88_RS22690 PF03458 UPF0126 domain D0T88_RS22695 PF01653 NAD-dependent DNA ligase adenylation domain D0T88_RS22695 PF03120 NAD-dependent DNA ligase OB-fold domain D0T88_RS22705 PF00625 Guanylate kinase D0T88_RS22710 PF01192 RNA polymerase Rpb6 D0T88_RS22715 PF02824 TGS domain D0T88_RS22715 PF13291 ACT domain D0T88_RS22715 PF04607 Region found in RelA / SpoT proteins D0T88_RS22720 PF00588 SpoU rRNA Methylase family D0T88_RS22720 PF12105 SpoU, rRNA methylase, C-terminal D0T88_RS22725 PF00270 DEAD/DEAH box helicase D0T88_RS22725 PF17191 RecG wedge domain D0T88_RS22725 PF00271 Helicase conserved C-terminal domain D0T88_RS22735 PF03616 Sodium/glutamate symporter D0T88_RS22740 PF00860 Permease family D0T88_RS22750 PF13802 Galactose mutarotase-like D0T88_RS22750 PF01055 Glycosyl hydrolases family 31 D0T88_RS22765 PF00589 Phage integrase family D0T88_RS22765 PF13356 Arm DNA-binding domain D0T88_RS22765 PF14659 Phage integrase, N-terminal SAM-like domain D0T88_RS22810 PF17345 Family of unknown function (DUF5375) D0T88_RS22825 PF07690 Major Facilitator Superfamily D0T88_RS22830 PF00892 EamA-like transporter family D0T88_RS22835 PF03180 NLPA lipoprotein D0T88_RS22845 PF07690 Major Facilitator Superfamily D0T88_RS22850 PF06711 Protein of unknown function (DUF1198) D0T88_RS22855 PF00860 Permease family D0T88_RS22860 PF13382 Adenine deaminase C-terminal domain D0T88_RS22860 PF01979 Amidohydrolase family D0T88_RS22865 PF07690 Major Facilitator Superfamily D0T88_RS22870 PF07690 Major Facilitator Superfamily D0T88_RS22875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS22875 PF05231 MASE1 D0T88_RS22875 PF07730 Histidine kinase D0T88_RS22880 PF00196 Bacterial regulatory proteins, luxR family D0T88_RS22880 PF00072 Response regulator receiver domain D0T88_RS22885 PF01842 ACT domain D0T88_RS22890 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D0T88_RS22890 PF00205 Thiamine pyrophosphate enzyme, central domain D0T88_RS22890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D0T88_RS22895 PF08049 IlvB leader peptide D0T88_RS22900 PF13939 Toxin TisB, type I toxin-antitoxin system D0T88_RS22905 PF07690 Major Facilitator Superfamily D0T88_RS22915 PF02656 Domain of unknown function (DUF202) D0T88_RS22920 PF02656 Domain of unknown function (DUF202) D0T88_RS22930 PF16347 Domain of unknown function (DUF4976) D0T88_RS22930 PF00884 Sulfatase D0T88_RS22935 PF00474 Sodium:solute symporter family D0T88_RS22940 PF12833 Helix-turn-helix domain D0T88_RS22940 PF02311 AraC-like ligand binding domain D0T88_RS22950 PF02378 Phosphotransferase system, EIIC D0T88_RS22950 PF00367 phosphotransferase system, EIIB D0T88_RS22955 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS22955 PF07702 UTRA domain D0T88_RS22960 PF06826 Predicted Permease Membrane Region D0T88_RS22960 PF02080 TrkA-C domain D0T88_RS22965 PF00011 Hsp20/alpha crystallin family D0T88_RS22970 PF00011 Hsp20/alpha crystallin family D0T88_RS22975 PF07119 Protein of unknown function (DUF1375) D0T88_RS22980 PF12566 Protein of unknown function (DUF3748) D0T88_RS22980 PF07676 WD40-like Beta Propeller Repeat D0T88_RS22985 PF01494 FAD binding domain D0T88_RS22990 PF07690 Major Facilitator Superfamily D0T88_RS22995 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D0T88_RS22995 PF13378 Enolase C-terminal domain-like D0T88_RS23000 PF01081 KDPG and KHG aldolase D0T88_RS23005 PF05035 2-keto-3-deoxy-galactonokinase D0T88_RS23010 PF07729 FCD domain D0T88_RS23010 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS23025 PF06078 Bacterial protein of unknown function (DUF937) D0T88_RS23030 PF00986 DNA gyrase B subunit, carboxyl terminus D0T88_RS23030 PF18053 DNA gyrase B subunit insert domain D0T88_RS23030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS23030 PF01751 Toprim domain D0T88_RS23030 PF00204 DNA gyrase B D0T88_RS23035 PF02463 RecF/RecN/SMC N terminal domain D0T88_RS23040 PF02768 DNA polymerase III beta subunit, C-terminal domain D0T88_RS23040 PF02767 DNA polymerase III beta subunit, central domain D0T88_RS23040 PF00712 DNA polymerase III beta subunit, N-terminal domain D0T88_RS23045 PF08299 Bacterial dnaA protein helix-turn-helix D0T88_RS23045 PF11638 DnaA N-terminal domain D0T88_RS23045 PF00308 Bacterial dnaA protein D0T88_RS23055 PF00468 Ribosomal protein L34 D0T88_RS23060 PF00825 Ribonuclease P D0T88_RS23065 PF01809 Putative membrane protein insertion efficiency factor D0T88_RS23070 PF14849 YidC periplasmic domain D0T88_RS23070 PF02096 60Kd inner membrane protein D0T88_RS23075 PF10396 GTP-binding protein TrmE N-terminus D0T88_RS23075 PF01926 50S ribosome-binding GTPase D0T88_RS23075 PF12631 MnmE helical domain D0T88_RS23080 PF08053 Tryptophanase operon leader peptide D0T88_RS23085 PF01212 Beta-eliminating lyase D0T88_RS23090 PF03222 Tryptophan/tyrosine permease family D0T88_RS23095 PF07690 Major Facilitator Superfamily D0T88_RS23100 PF03466 LysR substrate binding domain D0T88_RS23100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS23110 PF03358 NADPH-dependent FMN reductase D0T88_RS23115 PF00860 Permease family D0T88_RS23120 PF13419 Haloacid dehalogenase-like hydrolase D0T88_RS23130 PF03691 Uncharacterised protein family (UPF0167) D0T88_RS23135 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D0T88_RS23140 PF00756 Putative esterase D0T88_RS23140 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D0T88_RS23145 PF02264 LamB porin D0T88_RS23145 PF11471 Maltoporin periplasmic N-terminal extension D0T88_RS23150 PF00232 Glycosyl hydrolase family 1 D0T88_RS23155 PF00367 phosphotransferase system, EIIB D0T88_RS23155 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D0T88_RS23155 PF02378 Phosphotransferase system, EIIC D0T88_RS23160 PF03123 CAT RNA binding domain D0T88_RS23160 PF00874 PRD domain D0T88_RS23165 PF01895 PhoU domain D0T88_RS23170 PF00005 ABC transporter D0T88_RS23175 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS23180 PF00528 Binding-protein-dependent transport system inner membrane component D0T88_RS23185 PF12849 PBP superfamily domain D0T88_RS23195 PF03050 Transposase IS66 family D0T88_RS23195 PF13817 IS66 C-terminal element D0T88_RS23195 PF13005 zinc-finger binding domain of transposase IS66 D0T88_RS23195 PF13007 Transposase C of IS166 homeodomain D0T88_RS23200 PF05717 IS66 Orf2 like protein D0T88_RS23215 PF00577 Outer membrane usher protein D0T88_RS23215 PF13954 PapC N-terminal domain D0T88_RS23215 PF13953 PapC C-terminal domain D0T88_RS23220 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D0T88_RS23220 PF02753 Pili assembly chaperone PapD, C-terminal domain D0T88_RS23225 PF00419 Fimbrial protein D0T88_RS23230 PF01380 SIS domain D0T88_RS23235 PF14602 Hexapeptide repeat of succinyl-transferase D0T88_RS23235 PF12804 MobA-like NTP transferase domain D0T88_RS23235 PF00132 Bacterial transferase hexapeptide (six repeats) D0T88_RS23240 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain D0T88_RS23240 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D0T88_RS23245 PF02874 ATP synthase alpha/beta family, beta-barrel domain D0T88_RS23245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D0T88_RS23250 PF00231 ATP synthase D0T88_RS23255 PF02874 ATP synthase alpha/beta family, beta-barrel domain D0T88_RS23255 PF00306 ATP synthase alpha/beta chain, C terminal domain D0T88_RS23255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D0T88_RS23260 PF00213 ATP synthase delta (OSCP) subunit D0T88_RS23265 PF00430 ATP synthase B/B' CF(0) D0T88_RS23270 PF00137 ATP synthase subunit C D0T88_RS23275 PF00119 ATP synthase A chain D0T88_RS23280 PF03899 ATP synthase I chain D0T88_RS23285 PF02527 rRNA small subunit methyltransferase G D0T88_RS23290 PF01134 Glucose inhibited division protein A D0T88_RS23290 PF13932 GidA associated domain D0T88_RS23295 PF00258 Flavodoxin D0T88_RS23300 PF01037 Lrp/AsnC ligand binding domain D0T88_RS23305 PF03590 Aspartate-ammonia ligase D0T88_RS23310 PF05762 VWA domain containing CoxE-like protein D0T88_RS23315 PF17868 AAA lid domain D0T88_RS23315 PF07728 AAA domain (dynein-related subfamily) D0T88_RS23315 PF12592 Protein of unknown function (DUF3763) D0T88_RS23320 PF02705 K+ potassium transporter D0T88_RS23325 PF05025 RbsD / FucU transport protein family D0T88_RS23330 PF00005 ABC transporter D0T88_RS23335 PF02653 Branched-chain amino acid transport system / permease component D0T88_RS23340 PF13407 Periplasmic binding protein domain D0T88_RS23345 PF00294 pfkB family carbohydrate kinase D0T88_RS23350 PF00356 Bacterial regulatory proteins, lacI family D0T88_RS23355 PF07690 Major Facilitator Superfamily D0T88_RS23360 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS23360 PF07729 FCD domain D0T88_RS23395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS23395 PF03466 LysR substrate binding domain D0T88_RS23400 PF04219 Protein of unknown function, DUF D0T88_RS23405 PF01078 Magnesium chelatase, subunit ChlI D0T88_RS23405 PF13335 Magnesium chelatase, subunit ChlI C-terminal D0T88_RS23410 PF08046 IlvGEDA operon leader peptide D0T88_RS23420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D0T88_RS23420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D0T88_RS23420 PF00205 Thiamine pyrophosphate enzyme, central domain D0T88_RS23430 PF01063 Amino-transferase class IV D0T88_RS23435 PF00920 Dehydratase family D0T88_RS23440 PF00585 C-terminal regulatory domain of Threonine dehydratase D0T88_RS23440 PF00291 Pyridoxal-phosphate dependent enzyme D0T88_RS23445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS23445 PF03466 LysR substrate binding domain D0T88_RS23450 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D0T88_RS23450 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D0T88_RS23460 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system D0T88_RS23465 PF13361 UvrD-like helicase C-terminal domain D0T88_RS23465 PF00580 UvrD/REP helicase N-terminal domain D0T88_RS23470 PF02541 Ppx/GppA phosphatase family D0T88_RS23475 PF00271 Helicase conserved C-terminal domain D0T88_RS23475 PF00270 DEAD/DEAH box helicase D0T88_RS23480 PF00085 Thioredoxin D0T88_RS23490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D0T88_RS23490 PF07498 Rho termination factor, N-terminal domain D0T88_RS23490 PF07497 Rho termination factor, RNA-binding domain D0T88_RS23495 PF00953 Glycosyl transferase family 4 D0T88_RS23500 PF02706 Chain length determinant protein D0T88_RS23505 PF02350 UDP-N-acetylglucosamine 2-epimerase D0T88_RS23510 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D0T88_RS23510 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D0T88_RS23510 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D0T88_RS23515 PF16363 GDP-mannose 4,6 dehydratase D0T88_RS23520 PF00483 Nucleotidyl transferase D0T88_RS23530 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D0T88_RS23535 PF01943 Polysaccharide biosynthesis protein D0T88_RS23540 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 D0T88_RS23545 PF06899 WzyE protein, O-antigen assembly polymerase D0T88_RS23550 PF03808 Glycosyl transferase WecB/TagA/CpsF family D0T88_RS23555 PF00324 Amino acid permease D0T88_RS23580 PF04055 Radical SAM superfamily D0T88_RS23580 PF13186 Iron-sulfur cluster-binding domain D0T88_RS23585 PF00884 Sulfatase D0T88_RS23590 PF07219 HemY protein N-terminus D0T88_RS23590 PF07719 Tetratricopeptide repeat D0T88_RS23595 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase D0T88_RS23600 PF02602 Uroporphyrinogen-III synthase HemD D0T88_RS23605 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D0T88_RS23605 PF03900 Porphobilinogen deaminase, C-terminal domain D0T88_RS23610 PF01295 Adenylate cyclase, class-I D0T88_RS23610 PF12633 Adenylate cyclase NT domain D0T88_RS23615 PF01491 Frataxin-like domain D0T88_RS23635 PF13627 Prokaryotic lipoprotein-attachment site D0T88_RS23640 PF01678 Diaminopimelate epimerase D0T88_RS23645 PF04340 Protein of unknown function, DUF484 D0T88_RS23650 PF00589 Phage integrase family D0T88_RS23650 PF02899 Phage integrase, N-terminal SAM-like domain D0T88_RS23655 PF13419 Haloacid dehalogenase-like hydrolase D0T88_RS23660 PF00580 UvrD/REP helicase N-terminal domain D0T88_RS23660 PF13361 UvrD-like helicase C-terminal domain D0T88_RS23665 PF09992 Phosphodiester glycosidase D0T88_RS23670 PF01544 CorA-like Mg2+ transporter protein D0T88_RS23685 PF01544 CorA-like Mg2+ transporter protein D0T88_RS23695 PF00892 EamA-like transporter family D0T88_RS23700 PF03061 Thioesterase superfamily D0T88_RS23705 PF02253 Phospholipase A1 D0T88_RS23710 PF09382 RQC domain D0T88_RS23710 PF00570 HRDC domain D0T88_RS23710 PF00271 Helicase conserved C-terminal domain D0T88_RS23710 PF00270 DEAD/DEAH box helicase D0T88_RS23710 PF16124 RecQ zinc-binding D0T88_RS23715 PF01810 LysE type translocator D0T88_RS23720 PF01810 LysE type translocator D0T88_RS23725 PF12146 Serine aminopeptidase, S33 D0T88_RS23735 PF00892 EamA-like transporter family D0T88_RS23740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0T88_RS23740 PF03466 LysR substrate binding domain D0T88_RS23745 PF08267 Cobalamin-independent synthase, N-terminal domain D0T88_RS23745 PF01717 Cobalamin-independent synthase, Catalytic domain D0T88_RS23750 PF01738 Dienelactone hydrolase family D0T88_RS23755 PF01048 Phosphorylase superfamily D0T88_RS23760 PF02646 RmuC family D0T88_RS23765 PF01209 ubiE/COQ5 methyltransferase family D0T88_RS23770 PF02036 SCP-2 sterol transfer family D0T88_RS23775 PF03109 ABC1 family D0T88_RS23780 PF02416 mttA/Hcf106 family D0T88_RS23790 PF00902 Sec-independent protein translocase protein (TatC) D0T88_RS23795 PF01026 TatD related DNase D0T88_RS23800 PF02357 Transcription termination factor nusG D0T88_RS23805 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase D0T88_RS23810 PF00175 Oxidoreductase NAD-binding domain D0T88_RS23810 PF00970 Oxidoreductase FAD-binding domain D0T88_RS23815 PF01548 Transposase D0T88_RS23815 PF02371 Transposase IS116/IS110/IS902 family D0T88_RS23820 PF00108 Thiolase, N-terminal domain D0T88_RS23820 PF02803 Thiolase, C-terminal domain D0T88_RS23825 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D0T88_RS23825 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D0T88_RS23825 PF00378 Enoyl-CoA hydratase/isomerase D0T88_RS23830 PF00557 Metallopeptidase family M24 D0T88_RS23835 PF01205 Uncharacterized protein family UPF0029 D0T88_RS23835 PF09186 Domain of unknown function (DUF1949) D0T88_RS23840 PF02386 Cation transport protein D0T88_RS23845 PF12724 Flavodoxin domain D0T88_RS23875 PF03205 Molybdopterin guanine dinucleotide synthesis protein B D0T88_RS23880 PF12804 MobA-like NTP transferase domain D0T88_RS23885 PF06288 Protein of unknown function (DUF1040) D0T88_RS23890 PF01636 Phosphotransferase enzyme family D0T88_RS23895 PF01323 DSBA-like thioredoxin domain D0T88_RS23900 PF06097 Bacterial protein of unknown function (DUF945) D0T88_RS23905 PF01553 Acyltransferase D0T88_RS23910 PF00476 DNA polymerase family A D0T88_RS23910 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D0T88_RS23910 PF01367 5'-3' exonuclease, C-terminal SAM fold D0T88_RS23910 PF01612 3'-5' exonuclease D0T88_RS23915 PF01926 50S ribosome-binding GTPase D0T88_RS23920 PF04220 Der GTPase activator (YihI) D0T88_RS23925 PF04055 Radical SAM superfamily D0T88_RS23925 PF06969 HemN C-terminal domain D0T88_RS23935 PF00158 Sigma-54 interaction domain D0T88_RS23935 PF00072 Response regulator receiver domain D0T88_RS23935 PF02954 Bacterial regulatory protein, Fis family D0T88_RS23940 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS23940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS23940 PF00989 PAS fold D0T88_RS23945 PF00120 Glutamine synthetase, catalytic domain D0T88_RS23945 PF03951 Glutamine synthetase, beta-Grasp domain D0T88_RS23950 PF03144 Elongation factor Tu domain 2 D0T88_RS23950 PF00009 Elongation factor Tu GTP binding domain D0T88_RS23950 PF00679 Elongation factor G C-terminus D0T88_RS23955 PF00392 Bacterial regulatory proteins, gntR family D0T88_RS23955 PF07702 UTRA domain D0T88_RS23960 PF01261 Xylose isomerase-like TIM barrel D0T88_RS23965 PF07690 Major Facilitator Superfamily D0T88_RS23970 PF06178 Oligogalacturonate-specific porin protein (KdgM) D0T88_RS23985 PF01055 Glycosyl hydrolases family 31 D0T88_RS23990 PF01263 Aldose 1-epimerase D0T88_RS24000 PF01791 DeoC/LacD family aldolase D0T88_RS24005 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D0T88_RS24005 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D0T88_RS24010 PF00294 pfkB family carbohydrate kinase D0T88_RS24015 PF08220 DeoR-like helix-turn-helix domain D0T88_RS24015 PF00455 DeoR C terminal sensor domain D0T88_RS24020 PF13419 Haloacid dehalogenase-like hydrolase D0T88_RS24025 PF03631 Virulence factor BrkB D0T88_RS24030 PF02580 D-Tyr-tRNA(Tyr) deacylase D0T88_RS24035 PF09500 Putative thioesterase (yiiD_Cterm) D0T88_RS24035 PF00583 Acetyltransferase (GNAT) family D0T88_RS24040 PF07859 alpha/beta hydrolase fold D0T88_RS24045 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system D0T88_RS24055 PF01402 Ribbon-helix-helix protein, copG family D0T88_RS24065 PF04216 Protein involved in formate dehydrogenase formation D0T88_RS24070 PF01292 Prokaryotic cytochrome b561 D0T88_RS24075 PF09163 Formate dehydrogenase N, transmembrane D0T88_RS24075 PF13247 4Fe-4S dicluster domain D0T88_RS24085 PF02634 FdhD/NarQ family D0T88_RS24090 PF12889 Protein of unknown function (DUF3829) D0T88_RS24095 PF08279 HTH domain D0T88_RS24095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0T88_RS24100 PF05343 M42 glutamyl aminopeptidase D0T88_RS24105 PF02378 Phosphotransferase system, EIIC D0T88_RS24105 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0T88_RS24110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0T88_RS24115 PF05336 L-rhamnose mutarotase D0T88_RS24120 PF00596 Class II Aldolase and Adducin N-terminal domain D0T88_RS24125 PF06134 L-rhamnose isomerase (RhaA) D0T88_RS24130 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D0T88_RS24130 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D0T88_RS24135 PF02311 AraC-like ligand binding domain D0T88_RS24135 PF12833 Helix-turn-helix domain D0T88_RS24140 PF12833 Helix-turn-helix domain D0T88_RS24140 PF02311 AraC-like ligand binding domain D0T88_RS24145 PF06379 L-rhamnose-proton symport protein (RhaT) D0T88_RS24150 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D0T88_RS24150 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D0T88_RS24155 PF03812 2-keto-3-deoxygluconate permease D0T88_RS24160 PF03475 3-alpha domain D0T88_RS24160 PF03473 MOSC domain D0T88_RS24165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0T88_RS24165 PF00512 His Kinase A (phospho-acceptor) domain D0T88_RS24165 PF16527 Two-component sensor protein CpxA, periplasmic domain D0T88_RS24165 PF00672 HAMP domain D0T88_RS24170 PF00072 Response regulator receiver domain D0T88_RS24170 PF00486 Transcriptional regulatory protein, C terminal D0T88_RS24175 PF07813 LTXXQ motif family protein D0T88_RS24190 PF00589 Phage integrase family D0T88_RS24190 PF02899 Phage integrase, N-terminal SAM-like domain D0T88_RS24225 PF01051 Initiator Replication protein D0T88_RS24235 PF05717 IS66 Orf2 like protein D0T88_RS24240 PF13007 Transposase C of IS166 homeodomain D0T88_RS24240 PF03050 Transposase IS66 family D0T88_RS24240 PF13005 zinc-finger binding domain of transposase IS66 D0T88_RS24240 PF13817 IS66 C-terminal element D0T88_RS24245 PF00589 Phage integrase family D0T88_RS24310 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D0T88_RS24310 PF12708 Pectate lyase superfamily protein D0T88_RS24310 PF08548 Peptidase M10 serralysin C terminal D0T88_RS24325 PF01817 Chorismate mutase type II D0T88_RS24345 PF02585 GlcNAc-PI de-N-acetylase D0T88_RS24350 PF00535 Glycosyl transferase family 2 D0T88_RS24355 PF00132 Bacterial transferase hexapeptide (six repeats) D0T88_RS24370 PF01527 Transposase D0T88_RS24375 PF12833 Helix-turn-helix domain D0T88_RS24390 PF11647 Membrane Localization Domain D0T88_RS24420 PF03412 Peptidase C39 family D0T88_RS24420 PF00664 ABC transporter transmembrane region D0T88_RS24420 PF00005 ABC transporter D0T88_RS24425 PF02382 N-terminal domain in RTX protein D0T88_RS24425 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D0T88_RS24425 PF08339 RTX C-terminal domain D0T88_RS24430 PF02794 RTX toxin acyltransferase family D0T88_RS24450 PF01526 Tn3 transposase DDE domain D0T88_RS24450 PF13700 Domain of unknown function (DUF4158) D0T88_RS24475 PF02387 IncFII RepA protein family D0T88_RS24480 PF02387 IncFII RepA protein family D0T88_RS24485 PF08048 Tap RepA1 leader peptide D0T88_RS24490 PF10723 Replication regulatory protein RepB D0T88_RS24495 PF01848 Hok/gef family D0T88_RS24510 PF13817 IS66 C-terminal element D0T88_RS24510 PF03050 Transposase IS66 family D0T88_RS24510 PF13005 zinc-finger binding domain of transposase IS66 D0T88_RS24510 PF13007 Transposase C of IS166 homeodomain D0T88_RS24515 PF05717 IS66 Orf2 like protein D0T88_RS24525 PF05321 Haemolysin expression modulating protein D0T88_RS24530 PF00565 Staphylococcal nuclease homologue D0T88_RS24540 PF12602 Fertility inhibition protein N terminal D0T88_RS24540 PF04352 ProQ/FINO family D0T88_RS24545 PF00561 alpha/beta hydrolase fold D0T88_RS24550 PF05857 TraX protein D0T88_RS24555 PF18272 single-stranded DNA binding TraI N-terminal subdomain D0T88_RS24555 PF07057 DNA helicase TraI D0T88_RS24555 PF18340 DNA relaxase TraI 2B/2B-like domain D0T88_RS24555 PF08751 TrwC relaxase D0T88_RS24560 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin D0T88_RS24565 PF01850 PIN domain D0T88_RS24570 PF10412 Type IV secretion-system coupling protein DNA-binding domain D0T88_RS24570 PF12615 F sex factor protein N terminal D0T88_RS24580 PF05818 Enterobacterial TraT complement resistance protein D0T88_RS24590 PF07916 TraG-like protein, N-terminal region D0T88_RS24595 PF06122 Conjugative relaxosome accessory transposon protein D0T88_RS24610 PF13728 F plasmid transfer operon protein D0T88_RS24615 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) D0T88_RS24635 PF05717 IS66 Orf2 like protein D0T88_RS24640 PF13005 zinc-finger binding domain of transposase IS66 D0T88_RS24640 PF13007 Transposase C of IS166 homeodomain D0T88_RS24640 PF03050 Transposase IS66 family D0T88_RS24640 PF13817 IS66 C-terminal element D0T88_RS24650 PF13728 F plasmid transfer operon protein D0T88_RS24655 PF11100 Conjugal transfer protein TrbE D0T88_RS24660 PF06986 Type-1V conjugative transfer system mating pair stabilisation D0T88_RS24675 PF09673 Type-F conjugative transfer system pilin assembly protein D0T88_RS24700 PF06834 TraU protein D0T88_RS24705 PF12477 Sex factor F TraW protein N terminal D0T88_RS24710 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) D0T88_RS24715 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer D0T88_RS24745 PF01258 Prokaryotic dksA/traR C4-type zinc finger D0T88_RS24750 PF09676 Type IV conjugative transfer system lipoprotein (TraV) D0T88_RS24765 PF10894 Protein of unknown function (DUF2689) D0T88_RS24770 PF07296 TraP protein D0T88_RS24775 PF03743 Bacterial conjugation TrbI-like protein D0T88_RS24780 PF06586 TraK protein D0T88_RS24785 PF05309 TraE protein D0T88_RS24790 PF07178 TraL protein D0T88_RS24795 PF05513 TraA D0T88_RS24800 PF05509 TraY domain D0T88_RS24810 PF05261 TraM protein, DNA-binding D0T88_RS24815 PF01464 Transglycosylase SLT domain D0T88_RS24835 PF07128 Protein of unknown function (DUF1380) D0T88_RS24840 PF03230 Antirestriction protein D0T88_RS24850 PF07128 Protein of unknown function (DUF1380) D0T88_RS24860 PF01555 DNA methylase D0T88_RS24870 PF06924 Protein of unknown function (DUF1281) D0T88_RS24870 PF18406 Ferredoxin-like domain in Api92-like protein D0T88_RS24885 PF06406 StbA protein D0T88_RS24900 PF01051 Initiator Replication protein D0T88_RS24905 PF00589 Phage integrase family D0T88_RS24910 PF01845 CcdB protein D0T88_RS24915 PF07362 Post-segregation antitoxin CcdA D0T88_RS24920 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin D0T88_RS24925 PF01850 PIN domain