locus-tag class description CF60_RS00045 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CF60_RS00050 PF12804 MobA-like NTP transferase domain CF60_RS00055 PF06288 Protein of unknown function (DUF1040) CF60_RS00060 PF01636 Phosphotransferase enzyme family CF60_RS00065 PF01323 DSBA-like thioredoxin domain CF60_RS00070 PF06097 Bacterial protein of unknown function (DUF945) CF60_RS00075 PF01553 Acyltransferase CF60_RS00090 PF01926 50S ribosome-binding GTPase CF60_RS00095 PF04220 Der GTPase activator (YihI) CF60_RS00100 PF04055 Radical SAM superfamily CF60_RS00100 PF06969 HemN C-terminal domain CF60_RS00110 PF02954 Bacterial regulatory protein, Fis family CF60_RS00110 PF00072 Response regulator receiver domain CF60_RS00110 PF00158 Sigma-54 interaction domain CF60_RS00115 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS00115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS00115 PF00989 PAS fold CF60_RS00120 PF03951 Glutamine synthetase, beta-Grasp domain CF60_RS00120 PF00120 Glutamine synthetase, catalytic domain CF60_RS00130 PF03144 Elongation factor Tu domain 2 CF60_RS00130 PF00009 Elongation factor Tu GTP binding domain CF60_RS00130 PF00679 Elongation factor G C-terminus CF60_RS00135 PF07702 UTRA domain CF60_RS00135 PF00392 Bacterial regulatory proteins, gntR family CF60_RS00140 PF01261 Xylose isomerase-like TIM barrel CF60_RS00145 PF07690 Major Facilitator Superfamily CF60_RS00150 PF06178 Oligogalacturonate-specific porin protein (KdgM) CF60_RS00165 PF01055 Glycosyl hydrolases family 31 CF60_RS00175 PF01263 Aldose 1-epimerase CF60_RS00185 PF01791 DeoC/LacD family aldolase CF60_RS00190 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CF60_RS00190 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CF60_RS00195 PF00294 pfkB family carbohydrate kinase CF60_RS00200 PF08220 DeoR-like helix-turn-helix domain CF60_RS00200 PF00455 DeoR C terminal sensor domain CF60_RS00205 PF13419 Haloacid dehalogenase-like hydrolase CF60_RS00210 PF03631 Virulence factor BrkB CF60_RS00215 PF02580 D-Tyr-tRNA(Tyr) deacylase CF60_RS00220 PF00583 Acetyltransferase (GNAT) family CF60_RS00220 PF09500 Putative thioesterase (yiiD_Cterm) CF60_RS00235 PF01402 Ribbon-helix-helix protein, copG family CF60_RS00240 PF04216 Protein involved in formate dehydrogenase formation CF60_RS00245 PF01292 Prokaryotic cytochrome b561 CF60_RS00250 PF09163 Formate dehydrogenase N, transmembrane CF60_RS00250 PF13247 4Fe-4S dicluster domain CF60_RS00255 PF01568 Molydopterin dinucleotide binding domain CF60_RS00255 PF00384 Molybdopterin oxidoreductase CF60_RS00255 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS00260 PF01568 Molydopterin dinucleotide binding domain CF60_RS00260 PF00384 Molybdopterin oxidoreductase CF60_RS00260 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS00265 PF02634 FdhD/NarQ family CF60_RS00270 PF12889 Protein of unknown function (DUF3829) CF60_RS00275 PF08279 HTH domain CF60_RS00275 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CF60_RS00280 PF05343 M42 glutamyl aminopeptidase CF60_RS00285 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CF60_RS00285 PF02378 Phosphotransferase system, EIIC CF60_RS00290 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CF60_RS00300 PF05336 L-rhamnose mutarotase CF60_RS00305 PF00596 Class II Aldolase and Adducin N-terminal domain CF60_RS00310 PF06134 L-rhamnose isomerase (RhaA) CF60_RS00315 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CF60_RS00315 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CF60_RS00325 PF02311 AraC-like ligand binding domain CF60_RS00325 PF12833 Helix-turn-helix domain CF60_RS00330 PF02311 AraC-like ligand binding domain CF60_RS00330 PF12833 Helix-turn-helix domain CF60_RS00335 PF06379 L-rhamnose-proton symport protein (RhaT) CF60_RS00340 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CF60_RS00340 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CF60_RS00350 PF03812 2-keto-3-deoxygluconate permease CF60_RS00355 PF03475 3-alpha domain CF60_RS00355 PF03473 MOSC domain CF60_RS00370 PF13276 HTH-like domain CF60_RS00370 PF13333 Integrase core domain CF60_RS00370 PF00665 Integrase core domain CF60_RS00375 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS00375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS00375 PF00672 HAMP domain CF60_RS00375 PF16527 Two-component sensor protein CpxA, periplasmic domain CF60_RS00380 PF00486 Transcriptional regulatory protein, C terminal CF60_RS00380 PF00072 Response regulator receiver domain CF60_RS00385 PF07813 LTXXQ motif family protein CF60_RS00390 PF16916 Dimerisation domain of Zinc Transporter CF60_RS00390 PF01545 Cation efflux family CF60_RS00395 PF00365 Phosphofructokinase CF60_RS00405 PF02611 CDP-diacylglycerol pyrophosphatase CF60_RS00410 PF00121 Triosephosphate isomerase CF60_RS00415 PF07305 Protein of unknown function (DUF1454) CF60_RS00420 PF05656 Protein of unknown function (DUF805) CF60_RS00425 PF04175 Protein of unknown function (DUF406) CF60_RS00430 PF00582 Universal stress protein family CF60_RS00435 PF00970 Oxidoreductase FAD-binding domain CF60_RS00435 PF00175 Oxidoreductase NAD-binding domain CF60_RS00440 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CF60_RS00445 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CF60_RS00445 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CF60_RS00450 PF00230 Major intrinsic protein CF60_RS00455 PF06005 Cell division protein ZapB CF60_RS00460 PF03737 Aldolase/RraA CF60_RS00465 PF01040 UbiA prenyltransferase family CF60_RS00470 PF10431 C-terminal, D2-small domain, of ClpB protein CF60_RS00470 PF07724 AAA domain (Cdc48 subfamily) CF60_RS00470 PF00004 ATPase family associated with various cellular activities (AAA) CF60_RS00475 PF00227 Proteasome subunit CF60_RS00480 PF05036 Sporulation related domain CF60_RS00485 PF00356 Bacterial regulatory proteins, lacI family CF60_RS00490 PF00270 DEAD/DEAH box helicase CF60_RS00490 PF00271 Helicase conserved C-terminal domain CF60_RS00490 PF17764 3′ DNA-binding domain (3′BD) CF60_RS00490 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CF60_RS00490 PF18074 Primosomal protein N C-terminal domain CF60_RS00495 PF01197 Ribosomal protein L31 CF60_RS00515 PF13808 DDE_Tnp_1-associated CF60_RS00515 PF01609 Transposase DDE domain CF60_RS00525 PF05593 RHS Repeat CF60_RS00525 PF03527 RHS protein CF60_RS00525 PF14220 Domain of unknown function (DUF4329) CF60_RS00535 PF03400 IS1 transposase CF60_RS00540 PF03400 IS1 transposase CF60_RS00545 PF12759 InsA C-terminal domain CF60_RS00545 PF03811 InsA N-terminal domain CF60_RS00550 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CF60_RS00555 PF01340 Met Apo-repressor, MetJ CF60_RS00560 PF01053 Cys/Met metabolism PLP-dependent enzyme CF60_RS00565 PF03447 Homoserine dehydrogenase, NAD binding domain CF60_RS00565 PF00742 Homoserine dehydrogenase CF60_RS00565 PF00696 Amino acid kinase family CF60_RS00575 PF00149 Calcineurin-like phosphoesterase CF60_RS00575 PF02872 5'-nucleotidase, C-terminal domain CF60_RS00580 PF02219 Methylenetetrahydrofolate reductase CF60_RS00585 PF00141 Peroxidase CF60_RS00590 PF00892 EamA-like transporter family CF60_RS00595 PF06940 Domain of unknown function (DUF1287) CF60_RS00600 PF00465 Iron-containing alcohol dehydrogenase CF60_RS00605 PF00923 Transaldolase/Fructose-6-phosphate aldolase CF60_RS00610 PF00381 PTS HPr component phosphorylation site CF60_RS00610 PF05524 PEP-utilising enzyme, N-terminal CF60_RS00610 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CF60_RS00610 PF00391 PEP-utilising enzyme, mobile domain CF60_RS00610 PF02896 PEP-utilising enzyme, TIM barrel domain CF60_RS00620 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CF60_RS00625 PF02901 Pyruvate formate lyase-like CF60_RS00625 PF01228 Glycine radical CF60_RS00630 PF04055 Radical SAM superfamily CF60_RS00635 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CF60_RS00640 PF12833 Helix-turn-helix domain CF60_RS00650 PF00311 Phosphoenolpyruvate carboxylase CF60_RS00655 PF07687 Peptidase dimerisation domain CF60_RS00655 PF01546 Peptidase family M20/M25/M40 CF60_RS00660 PF02774 Semialdehyde dehydrogenase, dimerisation domain CF60_RS00660 PF01118 Semialdehyde dehydrogenase, NAD binding domain CF60_RS00665 PF00696 Amino acid kinase family CF60_RS00675 PF03466 LysR substrate binding domain CF60_RS00675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS00680 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS00680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CF60_RS00685 PF00440 Bacterial regulatory proteins, tetR family CF60_RS00690 PF07226 Protein of unknown function (DUF1422) CF60_RS00695 PF05958 tRNA (Uracil-5-)-methyltransferase CF60_RS00700 PF07715 TonB-dependent Receptor Plug Domain CF60_RS00700 PF00593 TonB dependent receptor CF60_RS00705 PF01177 Asp/Glu/Hydantoin racemase CF60_RS00735 PF01565 FAD binding domain CF60_RS00735 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CF60_RS00740 PF03099 Biotin/lipoate A/B protein ligase family CF60_RS00740 PF08279 HTH domain CF60_RS00740 PF02237 Biotin protein ligase C terminal domain CF60_RS00745 PF00485 Phosphoribulokinase / Uridine kinase family CF60_RS00775 PF00009 Elongation factor Tu GTP binding domain CF60_RS00775 PF03143 Elongation factor Tu C-terminal domain CF60_RS00775 PF03144 Elongation factor Tu domain 2 CF60_RS00780 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CF60_RS00785 PF00467 KOW motif CF60_RS00785 PF02357 Transcription termination factor nusG CF60_RS00790 PF03946 Ribosomal protein L11, N-terminal domain CF60_RS00790 PF00298 Ribosomal protein L11, RNA binding domain CF60_RS00795 PF00687 Ribosomal protein L1p/L10e family CF60_RS00800 PF00466 Ribosomal protein L10 CF60_RS00805 PF16320 Ribosomal protein L7/L12 dimerisation domain CF60_RS00805 PF00542 Ribosomal protein L7/L12 C-terminal domain CF60_RS00810 PF04563 RNA polymerase beta subunit CF60_RS00810 PF04565 RNA polymerase Rpb2, domain 3 CF60_RS00810 PF00562 RNA polymerase Rpb2, domain 6 CF60_RS00810 PF04560 RNA polymerase Rpb2, domain 7 CF60_RS00810 PF04561 RNA polymerase Rpb2, domain 2 CF60_RS00810 PF10385 RNA polymerase beta subunit external 1 domain CF60_RS00815 PF05000 RNA polymerase Rpb1, domain 4 CF60_RS00815 PF04998 RNA polymerase Rpb1, domain 5 CF60_RS00815 PF04983 RNA polymerase Rpb1, domain 3 CF60_RS00815 PF00623 RNA polymerase Rpb1, domain 2 CF60_RS00815 PF04997 RNA polymerase Rpb1, domain 1 CF60_RS00820 PF06968 Biotin and Thiamin Synthesis associated domain CF60_RS00820 PF04055 Radical SAM superfamily CF60_RS00825 PF05690 Thiazole biosynthesis protein ThiG CF60_RS00830 PF02597 ThiS family CF60_RS00835 PF00899 ThiF family CF60_RS00840 PF02581 Thiamine monophosphate synthase CF60_RS00845 PF13667 ThiC-associated domain CF60_RS00845 PF01964 Radical SAM ThiC family CF60_RS00850 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CF60_RS00855 PF00293 NUDIX domain CF60_RS00855 PF09297 NADH pyrophosphatase zinc ribbon domain CF60_RS00860 PF01208 Uroporphyrinogen decarboxylase (URO-D) CF60_RS00865 PF04493 Endonuclease V CF60_RS00870 PF04222 Protein of unknown function (DUF416) CF60_RS00875 PF00216 Bacterial DNA-binding protein CF60_RS00880 PF07356 Protein of unknown function (DUF1481) CF60_RS00885 PF13801 Heavy-metal resistance CF60_RS00890 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS00890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS00895 PF02954 Bacterial regulatory protein, Fis family CF60_RS00895 PF00072 Response regulator receiver domain CF60_RS00895 PF00158 Sigma-54 interaction domain CF60_RS00900 PF02844 Phosphoribosylglycinamide synthetase, N domain CF60_RS00900 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CF60_RS00900 PF02843 Phosphoribosylglycinamide synthetase, C domain CF60_RS00905 PF01808 AICARFT/IMPCHase bienzyme CF60_RS00905 PF02142 MGS-like domain CF60_RS00935 PF13673 Acetyltransferase (GNAT) domain CF60_RS00940 PF04204 Homoserine O-succinyltransferase CF60_RS00945 PF01274 Malate synthase CF60_RS00950 PF00463 Isocitrate lyase family CF60_RS00955 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CF60_RS00960 PF07906 ShET2 enterotoxin, N-terminal region CF60_RS00965 PF09339 IclR helix-turn-helix domain CF60_RS00965 PF01614 Bacterial transcriptional regulator CF60_RS00970 PF02607 B12 binding domain CF60_RS00970 PF02574 Homocysteine S-methyltransferase CF60_RS00970 PF02310 B12 binding domain CF60_RS00970 PF00809 Pterin binding enzyme CF60_RS00970 PF02965 Vitamin B12 dependent methionine synthase, activation domain CF60_RS00985 PF02690 Na+/Pi-cotransporter CF60_RS00990 PF03575 Peptidase family S51 CF60_RS01000 PF08240 Alcohol dehydrogenase GroES-like domain CF60_RS01000 PF00107 Zinc-binding dehydrogenase CF60_RS01005 PF03613 PTS system mannose/fructose/sorbose family IID component CF60_RS01010 PF03609 PTS system sorbose-specific iic component CF60_RS01015 PF03830 PTS system sorbose subfamily IIB component CF60_RS01020 PF03610 PTS system fructose IIA component CF60_RS01025 PF00106 short chain dehydrogenase CF60_RS01030 PF04198 Putative sugar-binding domain CF60_RS01030 PF13936 Helix-turn-helix domain CF60_RS01035 PF00849 RNA pseudouridylate synthase CF60_RS01035 PF01479 S4 domain CF60_RS01040 PF11656 YjbD family (DUF3811) CF60_RS01045 PF01842 ACT domain CF60_RS01045 PF00696 Amino acid kinase family CF60_RS01050 PF00342 Phosphoglucose isomerase CF60_RS01055 PF11106 Exopolysaccharide production protein YjbE CF60_RS01060 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF CF60_RS01065 PF06251 Capsule biosynthesis GfcC CF60_RS01070 PF06082 Exopolysaccharide biosynthesis protein YbjH CF60_RS01075 PF17089 Uncharacterised protein family CF60_RS01085 PF06146 Phosphate-starvation-inducible E CF60_RS01090 PF00083 Sugar (and other) transporter CF60_RS01095 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS01100 PF14785 Maltose transport system permease protein MalF P2 domain CF60_RS01100 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS01105 PF01547 Bacterial extracellular solute-binding protein CF60_RS01115 PF17912 MalK OB fold domain CF60_RS01115 PF00005 ABC transporter CF60_RS01120 PF02264 LamB porin CF60_RS01125 PF07148 Maltose operon periplasmic protein precursor (MalM) CF60_RS01130 PF13981 SopA-like central domain CF60_RS01130 PF13599 Pentapeptide repeats (9 copies) CF60_RS01135 PF04345 Chorismate lyase CF60_RS01140 PF01040 UbiA prenyltransferase family CF60_RS01145 PF01553 Acyltransferase CF60_RS01150 PF01219 Prokaryotic diacylglycerol kinase CF60_RS01155 PF01726 LexA DNA binding domain CF60_RS01155 PF00717 Peptidase S24-like CF60_RS01160 PF01554 MatE CF60_RS01165 PF05532 CsbD-like CF60_RS01170 PF01475 Ferric uptake regulator family CF60_RS01180 PF10897 Protein of unknown function (DUF2713) CF60_RS01185 PF01207 Dihydrouridine synthase (Dus) CF60_RS01190 PF09583 Phage shock protein G (Phageshock_PspG) CF60_RS01195 PF00107 Zinc-binding dehydrogenase CF60_RS01195 PF08240 Alcohol dehydrogenase GroES-like domain CF60_RS01200 PF03796 DnaB-like helicase C terminal domain CF60_RS01200 PF00772 DnaB-like helicase N terminal domain CF60_RS01205 PF01168 Alanine racemase, N-terminal domain CF60_RS01205 PF00842 Alanine racemase, C-terminal domain CF60_RS01210 PF00155 Aminotransferase class I and II CF60_RS01220 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CF60_RS01225 PF01894 Uncharacterised protein family UPF0047 CF60_RS01230 PF04237 YjbR CF60_RS01235 PF00005 ABC transporter CF60_RS01235 PF17755 UvrA DNA-binding domain CF60_RS01235 PF17760 UvrA interaction domain CF60_RS01240 PF00436 Single-strand binding protein family CF60_RS01245 PF15940 Family of unknown function CF60_RS01250 PF00563 EAL domain CF60_RS01250 PF12792 CSS motif domain associated with EAL CF60_RS01255 PF12833 Helix-turn-helix domain CF60_RS01260 PF00376 MerR family regulatory protein CF60_RS01260 PF09278 MerR, DNA binding CF60_RS01265 PF00860 Permease family CF60_RS01270 PF00999 Sodium/hydrogen exchanger family CF60_RS01275 PF00805 Pentapeptide repeats (8 copies) CF60_RS01280 PF00474 Sodium:solute symporter family CF60_RS01285 PF04341 Protein of unknown function, DUF485 CF60_RS01290 PF16177 Acetyl-coenzyme A synthetase N-terminus CF60_RS01290 PF00501 AMP-binding enzyme CF60_RS01290 PF13193 AMP-binding enzyme C-terminal domain CF60_RS01295 PF02335 Cytochrome c552 CF60_RS01300 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CF60_RS01300 PF13435 Cytochrome c554 and c-prime CF60_RS01305 PF13247 4Fe-4S dicluster domain CF60_RS01305 PF00037 4Fe-4S binding domain CF60_RS01310 PF03916 Polysulphide reductase, NrfD CF60_RS01315 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CF60_RS01315 PF01578 Cytochrome C assembly protein CF60_RS01320 PF03918 Cytochrome C biogenesis protein CF60_RS01330 PF00375 Sodium:dicarboxylate symporter family CF60_RS01335 PF08238 Sel1 repeat CF60_RS01340 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS01340 PF01568 Molydopterin dinucleotide binding domain CF60_RS01340 PF00384 Molybdopterin oxidoreductase CF60_RS01345 PF00384 Molybdopterin oxidoreductase CF60_RS01345 PF01568 Molydopterin dinucleotide binding domain CF60_RS01345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS01350 PF02321 Outer membrane efflux protein CF60_RS01355 PF04632 Fusaric acid resistance protein family CF60_RS01360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CF60_RS01360 PF00529 HlyD membrane-fusion protein of T1SS CF60_RS01365 PF17090 Uncharacterised protein family CF60_RS01370 PF00753 Metallo-beta-lactamase superfamily CF60_RS01370 PF14863 Alkyl sulfatase dimerisation CF60_RS01370 PF14864 Alkyl sulfatase C-terminal CF60_RS01375 PF00480 ROK family CF60_RS01380 PF00834 Ribulose-phosphate 3 epimerase family CF60_RS01385 PF02653 Branched-chain amino acid transport system / permease component CF60_RS01390 PF00005 ABC transporter CF60_RS01395 PF13407 Periplasmic binding protein domain CF60_RS01400 PF01380 SIS domain CF60_RS01400 PF01418 Helix-turn-helix domain, rpiR family CF60_RS01405 PF02502 Ribose/Galactose Isomerase CF60_RS01415 PF12706 Beta-lactamase superfamily domain CF60_RS01420 PF00583 Acetyltransferase (GNAT) family CF60_RS01430 PF07969 Amidohydrolase family CF60_RS01435 PF00005 ABC transporter CF60_RS01440 PF00005 ABC transporter CF60_RS01445 PF06007 Phosphonate metabolism protein PhnJ CF60_RS01450 PF05861 Bacterial phosphonate metabolism protein (PhnI) CF60_RS01455 PF05845 Bacterial phosphonate metabolism protein (PhnH) CF60_RS01460 PF06754 Phosphonate metabolism protein PhnG CF60_RS01465 PF00392 Bacterial regulatory proteins, gntR family CF60_RS01465 PF07702 UTRA domain CF60_RS01470 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS01480 PF00005 ABC transporter CF60_RS01485 PF06983 3-demethylubiquinone-9 3-methyltransferase CF60_RS01490 PF08274 PhnA Zinc-Ribbon CF60_RS01490 PF03831 PhnA domain CF60_RS01495 PF00350 Dynamin family CF60_RS01500 PF13990 YjcZ-like protein CF60_RS01505 PF00083 Sugar (and other) transporter CF60_RS01505 PF08946 Osmosensory transporter coiled coil CF60_RS01515 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS01515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS01520 PF00072 Response regulator receiver domain CF60_RS01520 PF00486 Transcriptional regulatory protein, C terminal CF60_RS01525 PF00884 Sulfatase CF60_RS01525 PF08019 Phosphoethanolamine transferase EptA/EptB CF60_RS01530 PF13520 Amino acid permease CF60_RS01535 PF12833 Helix-turn-helix domain CF60_RS01540 PF01276 Orn/Lys/Arg decarboxylase, major domain CF60_RS01540 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CF60_RS01540 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CF60_RS01545 PF12833 Helix-turn-helix domain CF60_RS01555 PF02056 Family 4 glycosyl hydrolase CF60_RS01555 PF11975 Family 4 glycosyl hydrolase C-terminal domain CF60_RS01570 PF09997 Predicted membrane protein (DUF2238) CF60_RS01575 PF05683 Fumarase C-terminus CF60_RS01575 PF05681 Fumarate hydratase (Fumerase) CF60_RS01580 PF03605 Anaerobic c4-dicarboxylate membrane transporter CF60_RS01590 PF00072 Response regulator receiver domain CF60_RS01595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS01595 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CF60_RS01595 PF17203 Single cache domain 3 CF60_RS01595 PF00989 PAS fold CF60_RS01600 PF06902 Divergent 4Fe-4S mono-cluster CF60_RS01605 PF14542 GCN5-related N-acetyl-transferase CF60_RS01610 PF11080 Endoribonuclease GhoS CF60_RS01615 PF10753 Toxin GhoT_OrtT CF60_RS01620 PF01336 OB-fold nucleic acid binding domain CF60_RS01620 PF00152 tRNA synthetases class II (D, K and N) CF60_RS01625 PF00854 POT family CF60_RS01630 PF01276 Orn/Lys/Arg decarboxylase, major domain CF60_RS01630 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CF60_RS01630 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CF60_RS01635 PF13520 Amino acid permease CF60_RS01640 PF00486 Transcriptional regulatory protein, C terminal CF60_RS01640 PF18500 CadC C-terminal domain 1 CF60_RS01655 PF11412 Disulphide bond corrector protein DsbC CF60_RS01655 PF02683 Cytochrome C biogenesis protein transmembrane region CF60_RS01660 PF03091 CutA1 divalent ion tolerance protein CF60_RS01665 PF03605 Anaerobic c4-dicarboxylate membrane transporter CF60_RS01670 PF10415 Fumarase C C-terminus CF60_RS01670 PF00206 Lyase CF60_RS01675 PF04186 FxsA cytoplasmic membrane protein CF60_RS01680 PF13520 Amino acid permease CF60_RS01685 PF00166 Chaperonin 10 Kd subunit CF60_RS01690 PF00118 TCP-1/cpn60 chaperonin family CF60_RS01695 PF13698 Domain of unknown function (DUF4156) CF60_RS01700 PF15922 YjeJ-like CF60_RS01705 PF04055 Radical SAM superfamily CF60_RS01710 PF08207 Elongation factor P (EF-P) KOW-like domain CF60_RS01710 PF01132 Elongation factor P (EF-P) OB domain CF60_RS01710 PF09285 Elongation factor P, C-terminal CF60_RS01715 PF08085 Entericidin EcnA/B family CF60_RS01720 PF08085 Entericidin EcnA/B family CF60_RS01725 PF00893 Small Multidrug Resistance protein CF60_RS01730 PF08212 Lipocalin-like domain CF60_RS01735 PF00144 Beta-lactamase CF60_RS01740 PF02313 Fumarate reductase subunit D CF60_RS01745 PF02300 Fumarate reductase subunit C CF60_RS01750 PF13183 4Fe-4S dicluster domain CF60_RS01750 PF13085 2Fe-2S iron-sulfur cluster binding domain CF60_RS01755 PF02910 Fumarate reductase flavoprotein C-term CF60_RS01755 PF00890 FAD binding domain CF60_RS01760 PF00152 tRNA synthetases class II (D, K and N) CF60_RS01765 PF13520 Amino acid permease CF60_RS01770 PF00924 Mechanosensitive ion channel CF60_RS01770 PF12795 Mechanosensitive ion channel porin domain CF60_RS01770 PF12794 Mechanosensitive ion channel inner membrane domain 1 CF60_RS01775 PF02666 Phosphatidylserine decarboxylase CF60_RS01780 PF03193 RsgA GTPase CF60_RS01785 PF00929 Exonuclease CF60_RS01805 PF08331 Domain of unknown function (DUF1730) CF60_RS01810 PF01256 Carbohydrate kinase CF60_RS01810 PF03853 YjeF-related protein N-terminus CF60_RS01815 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CF60_RS01820 PF01520 N-acetylmuramoyl-L-alanine amidase CF60_RS01825 PF08676 MutL C terminal dimerisation domain CF60_RS01825 PF01119 DNA mismatch repair protein, C-terminal domain CF60_RS01835 PF17209 Hfq protein CF60_RS01840 PF13167 GTP-binding GTPase N-terminal CF60_RS01840 PF16360 GTP-binding GTPase Middle Region CF60_RS01840 PF01926 50S ribosome-binding GTPase CF60_RS01845 PF12221 Bacterial membrane protein N terminal CF60_RS01845 PF01145 SPFH domain / Band 7 family CF60_RS01850 PF01145 SPFH domain / Band 7 family CF60_RS01855 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CF60_RS01860 PF00709 Adenylosuccinate synthetase CF60_RS01865 PF02082 Transcriptional regulator CF60_RS01870 PF17876 Cold shock domain CF60_RS01870 PF00575 S1 RNA binding domain CF60_RS01870 PF08461 Ribonuclease R winged-helix domain CF60_RS01870 PF08206 Ribonuclease B OB domain CF60_RS01870 PF00773 RNB domain CF60_RS01875 PF08032 RNA 2'-O ribose methyltransferase substrate binding CF60_RS01875 PF00588 SpoU rRNA Methylase family CF60_RS01880 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) CF60_RS01885 PF04012 PspA/IM30 family CF60_RS01890 PF10679 Protein of unknown function (DUF2491) CF60_RS01895 PF03994 Domain of Unknown Function (DUF350) CF60_RS01900 PF06693 Protein of unknown function (DUF1190) CF60_RS01905 PF03738 Glutathionylspermidine synthase preATP-grasp CF60_RS01910 PF18158 Adaptive response protein AidB N-terminal domain CF60_RS01910 PF02770 Acyl-CoA dehydrogenase, middle domain CF60_RS01910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CF60_RS01915 PF07338 Protein of unknown function (DUF1471) CF60_RS01920 PF07338 Protein of unknown function (DUF1471) CF60_RS01925 PF00326 Prolyl oligopeptidase family CF60_RS01930 PF08220 DeoR-like helix-turn-helix domain CF60_RS01930 PF00455 DeoR C terminal sensor domain CF60_RS01940 PF03611 PTS system sugar-specific permease component CF60_RS01945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CF60_RS01950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CF60_RS01955 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CF60_RS01960 PF01261 Xylose isomerase-like TIM barrel CF60_RS01965 PF00596 Class II Aldolase and Adducin N-terminal domain CF60_RS01970 PF07338 Protein of unknown function (DUF1471) CF60_RS01975 PF01250 Ribosomal protein S6 CF60_RS01980 PF00436 Single-strand binding protein family CF60_RS01985 PF01084 Ribosomal protein S18 CF60_RS01990 PF03948 Ribosomal protein L9, C-terminal domain CF60_RS01990 PF01281 Ribosomal protein L9, N-terminal domain CF60_RS01995 PF10887 Protein of unknown function (DUF2686) CF60_RS02000 PF17938 Tetracyclin repressor-like, C-terminal domain CF60_RS02005 PF08525 Opacity-associated protein A N-terminal motif CF60_RS02005 PF04225 Opacity-associated protein A LysM-like domain CF60_RS02010 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CF60_RS02010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CF60_RS02020 PF04405 Domain of Unknown function (DUF542) CF60_RS02020 PF01814 Hemerythrin HHE cation binding domain CF60_RS02025 PF00892 EamA-like transporter family CF60_RS02030 PF05368 NmrA-like family CF60_RS02040 PF02872 5'-nucleotidase, C-terminal domain CF60_RS02040 PF00149 Calcineurin-like phosphoesterase CF60_RS02045 PF00459 Inositol monophosphatase family CF60_RS02055 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CF60_RS02060 PF06526 Protein of unknown function (DUF1107) CF60_RS02065 PF00571 CBS domain CF60_RS02065 PF03471 Transporter associated domain CF60_RS02065 PF01595 Cyclin M transmembrane N-terminal domain CF60_RS02070 PF01625 Peptide methionine sulfoxide reductase CF60_RS02080 PF07244 Surface antigen variable number repeat CF60_RS02080 PF17243 POTRA domain TamA domain 1 CF60_RS02080 PF01103 Surface antigen CF60_RS02085 PF04357 TamB, inner membrane protein subunit of TAM complex CF60_RS02090 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CF60_RS02095 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CF60_RS02100 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CF60_RS02105 PF00719 Inorganic pyrophosphatase CF60_RS02110 PF13407 Periplasmic binding protein domain CF60_RS02115 PF00005 ABC transporter CF60_RS02120 PF02653 Branched-chain amino acid transport system / permease component CF60_RS02125 PF02653 Branched-chain amino acid transport system / permease component CF60_RS02130 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CF60_RS02135 PF01225 Mur ligase family, catalytic domain CF60_RS02135 PF02875 Mur ligase family, glutamate ligase domain CF60_RS02135 PF08245 Mur ligase middle domain CF60_RS02140 PF04751 Protein of unknown function (DUF615) CF60_RS02145 PF01523 Putative modulator of DNA gyrase CF60_RS02150 PF07361 Cytochrome b562 CF60_RS02155 PF04221 RelB antitoxin CF60_RS02160 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CF60_RS02175 PF13597 Anaerobic ribonucleoside-triphosphate reductase CF60_RS02175 PF03477 ATP cone domain CF60_RS02180 PF00128 Alpha amylase, catalytic domain CF60_RS02180 PF11941 Domain of unknown function (DUF3459) CF60_RS02185 PF00367 phosphotransferase system, EIIB CF60_RS02185 PF02378 Phosphotransferase system, EIIC CF60_RS02190 PF02378 Phosphotransferase system, EIIC CF60_RS02190 PF00367 phosphotransferase system, EIIB CF60_RS02195 PF00356 Bacterial regulatory proteins, lacI family CF60_RS02200 PF00689 Cation transporting ATPase, C-terminus CF60_RS02200 PF00690 Cation transporter/ATPase, N-terminus CF60_RS02205 PF01042 Endoribonuclease L-PSP CF60_RS02210 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CF60_RS02210 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CF60_RS02215 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CF60_RS02215 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CF60_RS02220 PF08052 PyrBI operon leader peptide CF60_RS02230 PF01042 Endoribonuclease L-PSP CF60_RS02240 PF00440 Bacterial regulatory proteins, tetR family CF60_RS02245 PF04074 YhcH/YjgK/YiaL CF60_RS02255 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CF60_RS02255 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CF60_RS02260 PF06877 Regulator of ribonuclease activity B CF60_RS02265 PF00583 Acetyltransferase (GNAT) family CF60_RS02270 PF05987 Bacterial protein of unknown function (DUF898) CF60_RS02280 PF04364 DNA polymerase III chi subunit, HolC CF60_RS02285 PF02789 Cytosol aminopeptidase family, N-terminal domain CF60_RS02285 PF00883 Cytosol aminopeptidase family, catalytic domain CF60_RS02290 PF03739 Lipopolysaccharide export system permease LptF/LptG CF60_RS02295 PF03739 Lipopolysaccharide export system permease LptF/LptG CF60_RS02300 PF05872 Bacterial protein of unknown function (DUF853) CF60_RS02305 PF08240 Alcohol dehydrogenase GroES-like domain CF60_RS02305 PF00107 Zinc-binding dehydrogenase CF60_RS02315 PF13356 Arm DNA-binding domain CF60_RS02315 PF00589 Phage integrase family CF60_RS02320 PF13683 Integrase core domain CF60_RS02320 PF13276 HTH-like domain CF60_RS02325 PF01527 Transposase CF60_RS02375 PF00176 SNF2 family N-terminal domain CF60_RS02375 PF12419 SNF2 Helicase protein CF60_RS02375 PF00271 Helicase conserved C-terminal domain CF60_RS02410 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase CF60_RS02420 PF06178 Oligogalacturonate-specific porin protein (KdgM) CF60_RS02435 PF00589 Phage integrase family CF60_RS02440 PF00589 Phage integrase family CF60_RS02450 PF00419 Fimbrial protein CF60_RS02455 PF00419 Fimbrial protein CF60_RS02460 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CF60_RS02460 PF02753 Pili assembly chaperone PapD, C-terminal domain CF60_RS02465 PF13954 PapC N-terminal domain CF60_RS02465 PF13953 PapC C-terminal domain CF60_RS02465 PF00577 Outer membrane usher protein CF60_RS02470 PF00419 Fimbrial protein CF60_RS02480 PF00419 Fimbrial protein CF60_RS02480 PF09160 FimH, mannose binding CF60_RS02485 PF02447 GntP family permease CF60_RS02495 PF03786 D-mannonate dehydratase (UxuA) CF60_RS02500 PF08125 Mannitol dehydrogenase C-terminal domain CF60_RS02500 PF01232 Mannitol dehydrogenase Rossmann domain CF60_RS02510 PF07729 FCD domain CF60_RS02510 PF00392 Bacterial regulatory proteins, gntR family CF60_RS02515 PF10887 Protein of unknown function (DUF2686) CF60_RS02525 PF04965 Gene 25-like lysozyme CF60_RS02530 PF03466 LysR substrate binding domain CF60_RS02530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS02535 PF01979 Amidohydrolase family CF60_RS02540 PF07670 Nucleoside recognition CF60_RS02545 PF07670 Nucleoside recognition CF60_RS02550 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family CF60_RS02560 PF06779 Uncharacterised MFS-type transporter YbfB CF60_RS02565 PF06977 SdiA-regulated CF60_RS02575 PF11823 Protein of unknown function (DUF3343) CF60_RS02580 PF01869 BadF/BadG/BcrA/BcrD ATPase family CF60_RS02585 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CF60_RS02590 PF04286 Protein of unknown function (DUF445) CF60_RS02595 PF07690 Major Facilitator Superfamily CF60_RS02600 PF04754 Putative transposase, YhgA-like CF60_RS02605 PF00392 Bacterial regulatory proteins, gntR family CF60_RS02605 PF00155 Aminotransferase class I and II CF60_RS02610 PF06568 Domain of unknown function (DUF1127) CF60_RS02620 PF08845 Toxin SymE, type I toxin-antitoxin system CF60_RS02625 PF01420 Type I restriction modification DNA specificity domain CF60_RS02630 PF12161 HsdM N-terminal domain CF60_RS02630 PF02384 N-6 DNA Methylase CF60_RS02635 PF08463 EcoEI R protein C-terminal CF60_RS02635 PF00271 Helicase conserved C-terminal domain CF60_RS02635 PF04851 Type III restriction enzyme, res subunit CF60_RS02635 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) CF60_RS02650 PF02492 CobW/HypB/UreG, nucleotide-binding domain CF60_RS02650 PF07683 Cobalamin synthesis protein cobW C-terminal domain CF60_RS02655 PF04328 Selenoprotein, putative CF60_RS02660 PF02554 Carbon starvation protein CstA CF60_RS02660 PF13722 5TM C-terminal transporter carbon starvation CstA CF60_RS02670 PF01613 Flavin reductase like domain CF60_RS02675 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CF60_RS02675 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CF60_RS02680 PF12706 Beta-lactamase superfamily domain CF60_RS02685 PF12833 Helix-turn-helix domain CF60_RS02690 PF07690 Major Facilitator Superfamily CF60_RS02695 PF03328 HpcH/HpaI aldolase/citrate lyase family CF60_RS02700 PF01557 Fumarylacetoacetate (FAA) hydrolase family CF60_RS02705 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CF60_RS02710 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CF60_RS02715 PF00171 Aldehyde dehydrogenase family CF60_RS02720 PF01557 Fumarylacetoacetate (FAA) hydrolase family CF60_RS02725 PF01047 MarR family CF60_RS02730 PF00672 HAMP domain CF60_RS02730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CF60_RS02730 PF02203 Tar ligand binding domain homologue CF60_RS02735 PF07690 Major Facilitator Superfamily CF60_RS02740 PF07729 FCD domain CF60_RS02740 PF00392 Bacterial regulatory proteins, gntR family CF60_RS02745 PF08240 Alcohol dehydrogenase GroES-like domain CF60_RS02745 PF00107 Zinc-binding dehydrogenase CF60_RS02750 PF00884 Sulfatase CF60_RS02755 PF10696 Protein of unknown function (DUF2501) CF60_RS02760 PF01695 IstB-like ATP binding protein CF60_RS02765 PF17948 DnaT DNA-binding domain CF60_RS02770 PF12821 Threonine/Serine exporter, ThrE CF60_RS02775 PF06738 Putative threonine/serine exporter CF60_RS02780 PF00196 Bacterial regulatory proteins, luxR family CF60_RS02785 PF00196 Bacterial regulatory proteins, luxR family CF60_RS02790 PF11575 FhuF 2Fe-2S C-terminal domain CF60_RS02790 PF06276 Ferric iron reductase FhuF-like transporter CF60_RS02795 PF07256 Protein of unknown function (DUF1435) CF60_RS02820 PF08468 Methyltransferase small domain N-terminal CF60_RS02820 PF05175 Methyltransferase small domain CF60_RS02825 PF03603 DNA polymerase III psi subunit CF60_RS02830 PF00583 Acetyltransferase (GNAT) family CF60_RS02835 PF13419 Haloacid dehalogenase-like hydrolase CF60_RS02840 PF00009 Elongation factor Tu GTP binding domain CF60_RS02840 PF03144 Elongation factor Tu domain 2 CF60_RS02840 PF16658 Class II release factor RF3, C-terminal domain CF60_RS02845 PF04972 BON domain CF60_RS02850 PF07043 Protein of unknown function (DUF1328) CF60_RS02855 PF01734 Patatin-like phospholipase CF60_RS02860 PF01026 TatD related DNase CF60_RS02865 PF04055 Radical SAM superfamily CF60_RS02870 PF11230 Protein of unknown function (DUF3029) CF60_RS02880 PF01791 DeoC/LacD family aldolase CF60_RS02885 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CF60_RS02885 PF00591 Glycosyl transferase family, a/b domain CF60_RS02885 PF02885 Glycosyl transferase family, helical bundle domain CF60_RS02890 PF01676 Metalloenzyme superfamily CF60_RS02895 PF01048 Phosphorylase superfamily CF60_RS02905 PF03099 Biotin/lipoate A/B protein ligase family CF60_RS02905 PF10437 Bacterial lipoate protein ligase C-terminus CF60_RS02910 PF10144 Bacterial virulence factor haemolysin CF60_RS02915 PF18429 Domain of unknown function (DUF5609) CF60_RS02920 PF18073 Rubredoxin metal binding domain CF60_RS02925 PF13521 AAA domain CF60_RS02925 PF01381 Helix-turn-helix CF60_RS02960 PF00106 short chain dehydrogenase CF60_RS02965 PF00248 Aldo/keto reductase family CF60_RS02970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS02970 PF03466 LysR substrate binding domain CF60_RS02975 PF12848 ABC transporter CF60_RS02975 PF00005 ABC transporter CF60_RS02980 PF01464 Transglycosylase SLT domain CF60_RS02980 PF14718 Soluble lytic murein transglycosylase L domain CF60_RS02985 PF01371 Trp repressor protein CF60_RS02990 PF01931 Protein of unknown function DUF84 CF60_RS02995 PF00300 Histidine phosphatase superfamily (branch 1) CF60_RS03000 PF12833 Helix-turn-helix domain CF60_RS03000 PF06445 GyrI-like small molecule binding domain CF60_RS03005 PF05981 CreA protein CF60_RS03010 PF00486 Transcriptional regulatory protein, C terminal CF60_RS03010 PF00072 Response regulator receiver domain CF60_RS03015 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS03015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS03015 PF00672 HAMP domain CF60_RS03020 PF06123 Inner membrane protein CreD CF60_RS03025 PF00486 Transcriptional regulatory protein, C terminal CF60_RS03025 PF00072 Response regulator receiver domain CF60_RS03035 PF00588 SpoU rRNA Methylase family CF60_RS03040 PF08254 Threonine leader peptide CF60_RS03045 PF03447 Homoserine dehydrogenase, NAD binding domain CF60_RS03045 PF13840 ACT domain CF60_RS03045 PF00742 Homoserine dehydrogenase CF60_RS03045 PF01842 ACT domain CF60_RS03045 PF00696 Amino acid kinase family CF60_RS03050 PF08544 GHMP kinases C terminal CF60_RS03050 PF00288 GHMP kinases N terminal domain CF60_RS03055 PF14821 Threonine synthase N terminus CF60_RS03055 PF00291 Pyridoxal-phosphate dependent enzyme CF60_RS03065 PF10697 Protein of unknown function (DUF2502) CF60_RS03070 PF03883 Peroxide stress protein YaaA CF60_RS03075 PF01235 Sodium:alanine symporter family CF60_RS03080 PF00923 Transaldolase/Fructose-6-phosphate aldolase CF60_RS03085 PF00994 Probable molybdopterin binding domain CF60_RS03090 PF01184 GPR1/FUN34/yaaH family CF60_RS03095 PF13099 Domain of unknown function (DUF3944) CF60_RS03095 PF03981 Ubiquinol-cytochrome C chaperone CF60_RS03100 PF10807 Protein of unknown function (DUF2541) CF60_RS03105 PF00012 Hsp70 protein CF60_RS03110 PF00226 DnaJ domain CF60_RS03110 PF00684 DnaJ central domain CF60_RS03110 PF01556 DnaJ C terminal domain CF60_RS03115 PF01848 Hok/gef family CF60_RS03125 PF16385 Domain of unknown function CF60_RS03125 PF00884 Sulfatase CF60_RS03135 PF06965 Na+/H+ antiporter 1 CF60_RS03140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS03140 PF03466 LysR substrate binding domain CF60_RS03150 PF13953 PapC C-terminal domain CF60_RS03150 PF00577 Outer membrane usher protein CF60_RS03150 PF13954 PapC N-terminal domain CF60_RS03155 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CF60_RS03155 PF02753 Pili assembly chaperone PapD, C-terminal domain CF60_RS03170 PF01649 Ribosomal protein S20 CF60_RS03175 PF10837 Protein of unknown function (DUF2575) CF60_RS03180 PF01687 Riboflavin kinase CF60_RS03180 PF06574 FAD synthetase CF60_RS03185 PF06827 Zinc finger found in FPG and IleRS CF60_RS03185 PF00133 tRNA synthetases class I (I, L, M and V) CF60_RS03185 PF08264 Anticodon-binding domain of tRNA CF60_RS03190 PF01252 Signal peptidase (SPase) II CF60_RS03195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CF60_RS03200 PF02401 LytB protein CF60_RS03205 PF01156 Inosine-uridine preferring nucleoside hydrolase CF60_RS03210 PF01113 Dihydrodipicolinate reductase, N-terminus CF60_RS03210 PF05173 Dihydrodipicolinate reductase, C-terminus CF60_RS03230 PF02142 MGS-like domain CF60_RS03230 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CF60_RS03230 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CF60_RS03240 PF07180 CaiF/GrlA transcriptional regulator CF60_RS03245 PF00132 Bacterial transferase hexapeptide (six repeats) CF60_RS03250 PF00378 Enoyl-CoA hydratase/isomerase CF60_RS03255 PF13193 AMP-binding enzyme C-terminal domain CF60_RS03255 PF00501 AMP-binding enzyme CF60_RS03260 PF02515 CoA-transferase family III CF60_RS03265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CF60_RS03265 PF02770 Acyl-CoA dehydrogenase, middle domain CF60_RS03265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CF60_RS03270 PF02028 BCCT, betaine/carnitine/choline family transporter CF60_RS03275 PF01012 Electron transfer flavoprotein domain CF60_RS03280 PF00766 Electron transfer flavoprotein FAD-binding domain CF60_RS03280 PF01012 Electron transfer flavoprotein domain CF60_RS03285 PF01494 FAD binding domain CF60_RS03295 PF00083 Sugar (and other) transporter CF60_RS03300 PF02525 Flavodoxin-like fold CF60_RS03305 PF02254 TrkA-N domain CF60_RS03305 PF00999 Sodium/hydrogen exchanger family CF60_RS03310 PF00186 Dihydrofolate reductase CF60_RS03315 PF00149 Calcineurin-like phosphoesterase CF60_RS03320 PF04379 ApaG domain CF60_RS03325 PF00398 Ribosomal RNA adenine dimethylase CF60_RS03335 PF00639 PPIC-type PPIASE domain CF60_RS03335 PF09312 SurA N-terminal domain CF60_RS03340 PF03968 OstA-like protein CF60_RS03340 PF04453 LPS transport system D CF60_RS03345 PF05099 Tellurite resistance protein TerB CF60_RS03345 PF00226 DnaJ domain CF60_RS03355 PF00849 RNA pseudouridylate synthase CF60_RS03360 PF18339 RapA N-terminal Tudor like domain 1 CF60_RS03360 PF18337 RapA N-terminal Tudor like domain CF60_RS03360 PF12137 RNA polymerase recycling family C-terminal CF60_RS03360 PF00271 Helicase conserved C-terminal domain CF60_RS03360 PF00176 SNF2 family N-terminal domain CF60_RS03365 PF03104 DNA polymerase family B, exonuclease domain CF60_RS03365 PF00136 DNA polymerase family B CF60_RS03370 PF00596 Class II Aldolase and Adducin N-terminal domain CF60_RS03375 PF11762 L-arabinose isomerase C-terminal domain CF60_RS03375 PF02610 L-arabinose isomerase CF60_RS03380 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CF60_RS03385 PF02311 AraC-like ligand binding domain CF60_RS03385 PF12833 Helix-turn-helix domain CF60_RS03390 PF09335 SNARE associated Golgi protein CF60_RS03395 PF00005 ABC transporter CF60_RS03400 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS03415 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF60_RS03415 PF12793 Sugar transport-related sRNA regulator N-term CF60_RS03425 PF00694 Aconitase C-terminal domain CF60_RS03430 PF00330 Aconitase family (aconitate hydratase) CF60_RS03435 PF00180 Isocitrate/isopropylmalate dehydrogenase CF60_RS03440 PF00682 HMGL-like CF60_RS03440 PF08502 LeuA allosteric (dimerisation) domain CF60_RS03445 PF08054 Leucine operon leader peptide CF60_RS03450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS03450 PF03466 LysR substrate binding domain CF60_RS03455 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CF60_RS03455 PF00205 Thiamine pyrophosphate enzyme, central domain CF60_RS03455 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CF60_RS03460 PF10369 Small subunit of acetolactate synthase CF60_RS03470 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CF60_RS03470 PF00356 Bacterial regulatory proteins, lacI family CF60_RS03475 PF02381 MraZ protein, putative antitoxin-like CF60_RS03480 PF01795 MraW methylase family CF60_RS03485 PF04999 Cell division protein FtsL CF60_RS03490 PF00905 Penicillin binding protein transpeptidase domain CF60_RS03490 PF03717 Penicillin-binding Protein dimerisation domain CF60_RS03495 PF02875 Mur ligase family, glutamate ligase domain CF60_RS03495 PF01225 Mur ligase family, catalytic domain CF60_RS03495 PF08245 Mur ligase middle domain CF60_RS03500 PF08245 Mur ligase middle domain CF60_RS03500 PF02875 Mur ligase family, glutamate ligase domain CF60_RS03500 PF01225 Mur ligase family, catalytic domain CF60_RS03505 PF00953 Glycosyl transferase family 4 CF60_RS03505 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CF60_RS03510 PF02875 Mur ligase family, glutamate ligase domain CF60_RS03510 PF08245 Mur ligase middle domain CF60_RS03515 PF01098 Cell cycle protein CF60_RS03520 PF04101 Glycosyltransferase family 28 C-terminal domain CF60_RS03520 PF03033 Glycosyltransferase family 28 N-terminal domain CF60_RS03525 PF02875 Mur ligase family, glutamate ligase domain CF60_RS03525 PF01225 Mur ligase family, catalytic domain CF60_RS03525 PF08245 Mur ligase middle domain CF60_RS03530 PF01820 D-ala D-ala ligase N-terminus CF60_RS03530 PF07478 D-ala D-ala ligase C-terminus CF60_RS03535 PF03799 Cell division protein FtsQ CF60_RS03535 PF08478 POTRA domain, FtsQ-type CF60_RS03540 PF02491 SHS2 domain inserted in FTSA CF60_RS03545 PF00091 Tubulin/FtsZ family, GTPase domain CF60_RS03545 PF12327 FtsZ family, C-terminal domain CF60_RS03550 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CF60_RS03555 PF06558 Secretion monitor precursor protein (SecM) CF60_RS03565 PF00293 NUDIX domain CF60_RS03575 PF03884 DNA gyrase inhibitor YacG CF60_RS03580 PF07072 Cell division protein CF60_RS03585 PF01121 Dephospho-CoA kinase CF60_RS03590 PF00478 IMP dehydrogenase / GMP reductase domain CF60_RS03595 PF00482 Type II secretion system (T2SS), protein F CF60_RS03600 PF00437 Type II/IV secretion system protein CF60_RS03600 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CF60_RS03605 PF07963 Prokaryotic N-terminal methylation motif CF60_RS03615 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CF60_RS03615 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CF60_RS03620 PF01510 N-acetylmuramoyl-L-alanine amidase CF60_RS03625 PF17113 Regulatory signalling modulator protein AmpE CF60_RS03630 PF00324 Amino acid permease CF60_RS03635 PF00392 Bacterial regulatory proteins, gntR family CF60_RS03635 PF07729 FCD domain CF60_RS03640 PF17831 Pyruvate dehydrogenase E1 component middle domain CF60_RS03640 PF00456 Transketolase, thiamine diphosphate binding domain CF60_RS03645 PF02817 e3 binding domain CF60_RS03645 PF00364 Biotin-requiring enzyme CF60_RS03645 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CF60_RS03650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CF60_RS03650 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS03655 PF11737 Protein of unknown function (DUF3300) CF60_RS03660 PF11791 Aconitate B N-terminal domain CF60_RS03660 PF00330 Aconitase family (aconitate hydratase) CF60_RS03660 PF06434 Aconitate hydratase 2 N-terminus CF60_RS03665 PF06062 Uncharacterised protein family (UPF0231) CF60_RS03670 PF02675 S-adenosylmethionine decarboxylase CF60_RS03675 PF17284 Spermidine synthase tetramerisation domain CF60_RS03680 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CF60_RS03685 PF00394 Multicopper oxidase CF60_RS03685 PF07732 Multicopper oxidase CF60_RS03685 PF07731 Multicopper oxidase CF60_RS03690 PF01011 PQQ enzyme repeat CF60_RS03695 PF00156 Phosphoribosyl transferase domain CF60_RS03700 PF00484 Carbonic anhydrase CF60_RS03705 PF00005 ABC transporter CF60_RS03710 PF01061 ABC-2 type transporter CF60_RS03715 PF03610 PTS system fructose IIA component CF60_RS03720 PF01522 Polysaccharide deacetylase CF60_RS03725 PF02261 Aspartate decarboxylase CF60_RS03730 PF04754 Putative transposase, YhgA-like CF60_RS03740 PF02569 Pantoate-beta-alanine ligase CF60_RS03745 PF02548 Ketopantoate hydroxymethyltransferase CF60_RS03750 PF00419 Fimbrial protein CF60_RS03755 PF00419 Fimbrial protein CF60_RS03760 PF00419 Fimbrial protein CF60_RS03765 PF13953 PapC C-terminal domain CF60_RS03765 PF00577 Outer membrane usher protein CF60_RS03765 PF13954 PapC N-terminal domain CF60_RS03770 PF02753 Pili assembly chaperone PapD, C-terminal domain CF60_RS03770 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CF60_RS03775 PF00419 Fimbrial protein CF60_RS03780 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CF60_RS03785 PF12627 Probable RNA and SrmB- binding site of polymerase A CF60_RS03785 PF01743 Poly A polymerase head domain CF60_RS03785 PF12626 Polymerase A arginine-rich C-terminus CF60_RS03790 PF00749 tRNA synthetases class I (E and Q), catalytic domain CF60_RS03795 PF01258 Prokaryotic dksA/traR C4-type zinc finger CF60_RS03800 PF17746 SfsA N-terminal OB domain CF60_RS03800 PF03749 Sugar fermentation stimulation protein RE domain CF60_RS03805 PF02834 LigT like Phosphoesterase CF60_RS03810 PF00270 DEAD/DEAH box helicase CF60_RS03810 PF00271 Helicase conserved C-terminal domain CF60_RS03810 PF08482 ATP-dependent helicase C-terminal CF60_RS03810 PF04408 Helicase associated domain (HA2) CF60_RS03815 PF00905 Penicillin binding protein transpeptidase domain CF60_RS03815 PF00912 Transglycosylase CF60_RS03815 PF14814 Bifunctional transglycosylase second domain CF60_RS03815 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CF60_RS03820 PF00593 TonB dependent receptor CF60_RS03820 PF07715 TonB-dependent Receptor Plug Domain CF60_RS03825 PF00005 ABC transporter CF60_RS03830 PF01497 Periplasmic binding protein CF60_RS03835 PF01032 FecCD transport family CF60_RS03840 PF00202 Aminotransferase class-III CF60_RS03845 PF00654 Voltage gated chloride channel CF60_RS03850 PF01521 Iron-sulphur cluster biosynthesis CF60_RS03855 PF03458 UPF0126 domain CF60_RS03860 PF01497 Periplasmic binding protein CF60_RS03865 PF01048 Phosphorylase superfamily CF60_RS03870 PF01966 HD domain CF60_RS03875 PF00595 PDZ domain CF60_RS03880 PF13556 PucR C-terminal helix-turn-helix domain CF60_RS03880 PF05651 Putative sugar diacid recognition CF60_RS03880 PF17853 GGDEF-like domain CF60_RS03885 PF11944 Protein of unknown function (DUF3461) CF60_RS03890 PF14602 Hexapeptide repeat of succinyl-transferase CF60_RS03890 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CF60_RS03890 PF00132 Bacterial transferase hexapeptide (six repeats) CF60_RS03895 PF01842 ACT domain CF60_RS03895 PF08335 GlnD PII-uridylyltransferase CF60_RS03895 PF01966 HD domain CF60_RS03895 PF01909 Nucleotidyltransferase domain CF60_RS03900 PF00557 Metallopeptidase family M24 CF60_RS03905 PF00318 Ribosomal protein S2 CF60_RS03910 PF00889 Elongation factor TS CF60_RS03915 PF00696 Amino acid kinase family CF60_RS03920 PF01765 Ribosome recycling factor CF60_RS03925 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CF60_RS03925 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CF60_RS03925 PF13288 DXP reductoisomerase C-terminal domain CF60_RS03930 PF01255 Putative undecaprenyl diphosphate synthase CF60_RS03940 PF17820 PDZ domain CF60_RS03940 PF02163 Peptidase family M50 CF60_RS03945 PF07244 Surface antigen variable number repeat CF60_RS03945 PF01103 Surface antigen CF60_RS03950 PF03938 Outer membrane protein (OmpH-like) CF60_RS03955 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CF60_RS03955 PF00132 Bacterial transferase hexapeptide (six repeats) CF60_RS03960 PF07977 FabA-like domain CF60_RS03965 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CF60_RS03965 PF00132 Bacterial transferase hexapeptide (six repeats) CF60_RS03970 PF02684 Lipid-A-disaccharide synthetase CF60_RS03975 PF01351 Ribonuclease HII CF60_RS03980 PF02811 PHP domain CF60_RS03980 PF14579 Helix-hairpin-helix motif CF60_RS03980 PF01336 OB-fold nucleic acid binding domain CF60_RS03980 PF07733 Bacterial DNA polymerase III alpha NTPase domain CF60_RS03980 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CF60_RS03985 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CF60_RS03990 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CF60_RS03990 PF01276 Orn/Lys/Arg decarboxylase, major domain CF60_RS03990 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CF60_RS03995 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CF60_RS04000 PF11734 TilS substrate C-terminal domain CF60_RS04000 PF01171 PP-loop family CF60_RS04000 PF09179 TilS substrate binding domain CF60_RS04005 PF07073 Modulator of Rho-dependent transcription termination (ROF) CF60_RS04010 PF06786 Uncharacterised protein family (UPF0253) CF60_RS04015 PF07152 YaeQ protein CF60_RS04020 PF00472 RF-1 domain CF60_RS04025 PF17185 NlpE C-terminal OB domain CF60_RS04025 PF04170 NlpE N-terminal domain CF60_RS04030 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CF60_RS04035 PF04073 Aminoacyl-tRNA editing domain CF60_RS04035 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CF60_RS04035 PF03129 Anticodon binding domain CF60_RS04040 PF01980 tRNA-methyltransferase O CF60_RS04040 PF18389 TrmO C-terminal domain CF60_RS04045 PF16358 RcsF lipoprotein CF60_RS04050 PF03180 NLPA lipoprotein CF60_RS04055 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS04060 PF00005 ABC transporter CF60_RS04060 PF09383 NIL domain CF60_RS04100 PF00248 Aldo/keto reductase family CF60_RS04105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS04105 PF03466 LysR substrate binding domain CF60_RS04110 PF03372 Endonuclease/Exonuclease/phosphatase family CF60_RS04115 PF08241 Methyltransferase domain CF60_RS04120 PF01476 LysM domain CF60_RS04120 PF01464 Transglycosylase SLT domain CF60_RS04125 PF00753 Metallo-beta-lactamase superfamily CF60_RS04125 PF16123 Hydroxyacylglutathione hydrolase C-terminus CF60_RS04130 PF08241 Methyltransferase domain CF60_RS04135 PF00075 RNase H CF60_RS04140 PF00929 Exonuclease CF60_RS04165 PF05638 Type VI secretion system effector, Hcp CF60_RS04190 PF10431 C-terminal, D2-small domain, of ClpB protein CF60_RS04190 PF17871 AAA lid domain CF60_RS04190 PF00004 ATPase family associated with various cellular activities (AAA) CF60_RS04190 PF07724 AAA domain (Cdc48 subfamily) CF60_RS04200 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE CF60_RS04220 PF05947 Type VI secretion system, TssF CF60_RS04230 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CF60_RS04260 PF04717 Type VI secretion system, phage-baseplate injector CF60_RS04275 PF13808 DDE_Tnp_1-associated CF60_RS04275 PF01609 Transposase DDE domain CF60_RS04280 PF00872 Transposase, Mutator family CF60_RS04285 PF00795 Carbon-nitrogen hydrolase CF60_RS04295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CF60_RS04295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CF60_RS04295 PF02770 Acyl-CoA dehydrogenase, middle domain CF60_RS04295 PF09317 Domain of unknown function (DUF1974) CF60_RS04300 PF13580 SIS domain CF60_RS04305 PF13230 Glutamine amidotransferases class-II CF60_RS04310 PF03734 L,D-transpeptidase catalytic domain CF60_RS04315 PF00877 NlpC/P60 family CF60_RS04330 PF00771 FHIPEP family CF60_RS04335 PF13677 Membrane MotB of proton-channel complex MotA/MotB CF60_RS04335 PF00691 OmpA family CF60_RS04340 PF11798 IMS family HHH motif CF60_RS04340 PF00817 impB/mucB/samB family CF60_RS04340 PF11799 impB/mucB/samB family C-terminal domain CF60_RS04350 PF13957 Toxin YafO, type II toxin-antitoxin system CF60_RS04355 PF13673 Acetyltransferase (GNAT) domain CF60_RS04360 PF00472 RF-1 domain CF60_RS04365 PF01546 Peptidase family M20/M25/M40 CF60_RS04365 PF07687 Peptidase dimerisation domain CF60_RS04370 PF00156 Phosphoribosyl transferase domain CF60_RS04375 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) CF60_RS04380 PF07417 Sigma factor-binding transcriptional regulator Crl CF60_RS04385 PF00267 Gram-negative porin CF60_RS04390 PF01472 PUA domain CF60_RS04390 PF00696 Amino acid kinase family CF60_RS04395 PF00171 Aldehyde dehydrogenase family CF60_RS04405 PF00589 Phage integrase family CF60_RS04410 PF13693 Winged helix-turn-helix DNA-binding CF60_RS04430 PF03466 LysR substrate binding domain CF60_RS04430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS04435 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CF60_RS04440 PF07690 Major Facilitator Superfamily CF60_RS04445 PF02625 XdhC and CoxI family CF60_RS04445 PF13478 XdhC Rossmann domain CF60_RS04450 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CF60_RS04450 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CF60_RS04455 PF00941 FAD binding domain in molybdopterin dehydrogenase CF60_RS04455 PF03450 CO dehydrogenase flavoprotein C-terminal domain CF60_RS04465 PF07274 Protein of unknown function (DUF1440) CF60_RS04470 PF03692 Putative zinc- or iron-chelating domain CF60_RS04485 PF16967 E-set like domain CF60_RS04485 PF15976 CS1-pili formation C-terminal CF60_RS04490 PF18649 EcpB C-terminal domain CF60_RS04495 PF16449 Fimbrillin MatB CF60_RS04500 PF00196 Bacterial regulatory proteins, luxR family CF60_RS04505 PF00444 Ribosomal protein L36 CF60_RS04510 PF01197 Ribosomal protein L31 CF60_RS04520 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CF60_RS04525 PF12146 Serine aminopeptidase, S33 CF60_RS04530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS04530 PF03466 LysR substrate binding domain CF60_RS04535 PF03466 LysR substrate binding domain CF60_RS04535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS04540 PF00248 Aldo/keto reductase family CF60_RS04545 PF00248 Aldo/keto reductase family CF60_RS04550 PF11924 Inverse autotransporter, beta-domain CF60_RS04555 PF12833 Helix-turn-helix domain CF60_RS04560 PF00248 Aldo/keto reductase family CF60_RS04565 PF04224 Protein of unknown function, DUF417 CF60_RS04570 PF07338 Protein of unknown function (DUF1471) CF60_RS04575 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS04575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CF60_RS04580 PF12852 Cupin CF60_RS04580 PF12833 Helix-turn-helix domain CF60_RS04585 PF02754 Cysteine-rich domain CF60_RS04590 PF13183 4Fe-4S dicluster domain CF60_RS04590 PF11870 Domain of unknown function (DUF3390) CF60_RS04590 PF02589 LUD domain CF60_RS04595 PF02589 LUD domain CF60_RS04610 PF05199 GMC oxidoreductase CF60_RS04610 PF00732 GMC oxidoreductase CF60_RS04615 PF00171 Aldehyde dehydrogenase family CF60_RS04620 PF00440 Bacterial regulatory proteins, tetR family CF60_RS04620 PF13977 BetI-type transcriptional repressor, C-terminal CF60_RS04625 PF02028 BCCT, betaine/carnitine/choline family transporter CF60_RS04635 PF00196 Bacterial regulatory proteins, luxR family CF60_RS04635 PF00563 EAL domain CF60_RS04640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS04640 PF03466 LysR substrate binding domain CF60_RS04645 PF06496 Protein of unknown function (DUF1097) CF60_RS04650 PF12796 Ankyrin repeats (3 copies) CF60_RS04655 PF11392 Protein of unknown function (DUF2877) CF60_RS04660 PF02629 CoA binding domain CF60_RS04660 PF00549 CoA-ligase CF60_RS04665 PF06545 Protein of unknown function (DUF1116) CF60_RS04670 PF00696 Amino acid kinase family CF60_RS04675 PF07969 Amidohydrolase family CF60_RS04685 PF13407 Periplasmic binding protein domain CF60_RS04690 PF00005 ABC transporter CF60_RS04695 PF02653 Branched-chain amino acid transport system / permease component CF60_RS04700 PF02653 Branched-chain amino acid transport system / permease component CF60_RS04705 PF00107 Zinc-binding dehydrogenase CF60_RS04705 PF08240 Alcohol dehydrogenase GroES-like domain CF60_RS04720 PF01810 LysE type translocator CF60_RS04725 PF07338 Protein of unknown function (DUF1471) CF60_RS04730 PF06506 Propionate catabolism activator CF60_RS04730 PF00158 Sigma-54 interaction domain CF60_RS04730 PF02954 Bacterial regulatory protein, Fis family CF60_RS04740 PF00285 Citrate synthase, C-terminal domain CF60_RS04745 PF03972 MmgE/PrpD family CF60_RS04750 PF13193 AMP-binding enzyme C-terminal domain CF60_RS04750 PF16177 Acetyl-coenzyme A synthetase N-terminus CF60_RS04750 PF00501 AMP-binding enzyme CF60_RS04755 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CF60_RS04760 PF07969 Amidohydrolase family CF60_RS04765 PF03466 LysR substrate binding domain CF60_RS04765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS04770 PF00484 Carbonic anhydrase CF60_RS04775 PF02560 Cyanate lyase C-terminal domain CF60_RS04780 PF07690 Major Facilitator Superfamily CF60_RS04785 PF12464 Maltose acetyltransferase CF60_RS04785 PF00132 Bacterial transferase hexapeptide (six repeats) CF60_RS04790 PF01306 LacY proton/sugar symporter CF60_RS04795 PF02929 Beta galactosidase small chain CF60_RS04795 PF16353 Domain of unknown function(DUF4981) CF60_RS04795 PF00703 Glycosyl hydrolases family 2 CF60_RS04795 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CF60_RS04795 PF02837 Glycosyl hydrolases family 2, sugar binding domain CF60_RS04800 PF00356 Bacterial regulatory proteins, lacI family CF60_RS04805 PF01614 Bacterial transcriptional regulator CF60_RS04805 PF09339 IclR helix-turn-helix domain CF60_RS04810 PF01494 FAD binding domain CF60_RS04815 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CF60_RS04820 PF12697 Alpha/beta hydrolase family CF60_RS04825 PF01557 Fumarylacetoacetate (FAA) hydrolase family CF60_RS04830 PF01118 Semialdehyde dehydrogenase, NAD binding domain CF60_RS04830 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CF60_RS04835 PF07836 DmpG-like communication domain CF60_RS04835 PF00682 HMGL-like CF60_RS04840 PF07690 Major Facilitator Superfamily CF60_RS04845 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CF60_RS04850 PF00756 Putative esterase CF60_RS04860 PF02583 Metal-sensitive transcriptional repressor CF60_RS04870 PF00132 Bacterial transferase hexapeptide (six repeats) CF60_RS04875 PF00535 Glycosyl transferase family 2 CF60_RS04880 PF02585 GlcNAc-PI de-N-acetylase CF60_RS04885 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CF60_RS04890 PF00005 ABC transporter CF60_RS04895 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS04900 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CF60_RS04905 PF00490 Delta-aminolevulinic acid dehydratase CF60_RS04910 PF03797 Autotransporter beta-domain CF60_RS04910 PF03212 Pertactin CF60_RS04915 PF15977 Winged helix-turn-helix DNA binding CF60_RS04920 PF00144 Beta-lactamase CF60_RS04930 PF05992 SbmA/BacA-like family CF60_RS04935 PF07759 Protein of unknown function (DUF1615) CF60_RS04940 PF10954 Protein of unknown function (DUF2755) CF60_RS04945 PF10953 Protein of unknown function (DUF2754) CF60_RS04950 PF01820 D-ala D-ala ligase N-terminus CF60_RS04950 PF07478 D-ala D-ala ligase C-terminus CF60_RS04960 PF10796 Sigma-S stabilisation anti-adaptor protein CF60_RS04965 PF00245 Alkaline phosphatase CF60_RS04970 PF07769 psiF repeat CF60_RS04975 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS04975 PF05230 MASE2 domain CF60_RS04980 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CF60_RS04985 PF01202 Shikimate kinase CF60_RS04990 PF16362 YaiA protein CF60_RS05000 PF07302 AroM protein CF60_RS05005 PF06865 Pyrimidine/purine nucleoside phosphorylase CF60_RS05015 PF04381 Putative exonuclease, RdgC CF60_RS05020 PF00480 ROK family CF60_RS05030 PF13476 AAA domain CF60_RS05035 PF12320 Type 5 capsule protein repressor C-terminal domain CF60_RS05035 PF00149 Calcineurin-like phosphoesterase CF60_RS05040 PF00486 Transcriptional regulatory protein, C terminal CF60_RS05040 PF00072 Response regulator receiver domain CF60_RS05045 PF11808 Phosphate regulon sensor protein PhoR CF60_RS05045 PF00989 PAS fold CF60_RS05045 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS05045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS05050 PF05525 Branched-chain amino acid transport protein CF60_RS05055 PF00324 Amino acid permease CF60_RS05060 PF02903 Alpha amylase, N-terminal ig-like domain CF60_RS05060 PF00128 Alpha amylase, catalytic domain CF60_RS05070 PF04336 Acyl carrier protein phosphodiesterase CF60_RS05075 PF02547 Queuosine biosynthesis protein CF60_RS05080 PF01702 Queuine tRNA-ribosyltransferase CF60_RS05085 PF02699 Preprotein translocase subunit CF60_RS05090 PF02355 Protein export membrane protein CF60_RS05090 PF13721 SecD export protein N-terminal TM region CF60_RS05090 PF07549 SecD/SecF GG Motif CF60_RS05095 PF07549 SecD/SecF GG Motif CF60_RS05095 PF02355 Protein export membrane protein CF60_RS05100 PF01844 HNH endonuclease CF60_RS05110 PF03502 Nucleoside-specific channel-forming protein, Tsx CF60_RS05115 PF11622 Protein of unknown function (DUF3251) CF60_RS05125 PF01797 Transposase IS200 like CF60_RS05130 PF07282 Putative transposase DNA-binding domain CF60_RS05130 PF12323 Helix-turn-helix domain CF60_RS05130 PF01385 Probable transposase CF60_RS05135 PF11622 Protein of unknown function (DUF3251) CF60_RS05140 PF03477 ATP cone domain CF60_RS05145 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CF60_RS05145 PF01872 RibD C-terminal domain CF60_RS05150 PF00885 6,7-dimethyl-8-ribityllumazine synthase CF60_RS05155 PF01029 NusB family CF60_RS05160 PF00586 AIR synthase related protein, N-terminal domain CF60_RS05160 PF02769 AIR synthase related protein, C-terminal domain CF60_RS05165 PF04608 Phosphatidylglycerophosphatase A CF60_RS05175 PF00248 Aldo/keto reductase family CF60_RS05180 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CF60_RS05180 PF02780 Transketolase, C-terminal domain CF60_RS05180 PF02779 Transketolase, pyrimidine binding domain CF60_RS05185 PF00348 Polyprenyl synthetase CF60_RS05190 PF02609 Exonuclease VII small subunit CF60_RS05200 PF01965 DJ-1/PfpI family CF60_RS05205 PF08546 Ketopantoate reductase PanE/ApbA C terminal CF60_RS05205 PF02558 Ketopantoate reductase PanE/ApbA CF60_RS05210 PF04461 Protein of unknown function (DUF520) CF60_RS05215 PF07690 Major Facilitator Superfamily CF60_RS05220 PF01040 UbiA prenyltransferase family CF60_RS05225 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CF60_RS05230 PF00510 Cytochrome c oxidase subunit III CF60_RS05235 PF00115 Cytochrome C and Quinol oxidase polypeptide I CF60_RS05240 PF06481 COX Aromatic Rich Motif CF60_RS05240 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CF60_RS05245 PF07690 Major Facilitator Superfamily CF60_RS05250 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CF60_RS05250 PF03923 Uncharacterized lipoprotein CF60_RS05255 PF01722 BolA-like protein CF60_RS05265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CF60_RS05265 PF05697 Bacterial trigger factor protein (TF) CF60_RS05265 PF05698 Bacterial trigger factor protein (TF) C-terminus CF60_RS05270 PF00574 Clp protease CF60_RS05275 PF06689 ClpX C4-type zinc finger CF60_RS05275 PF10431 C-terminal, D2-small domain, of ClpB protein CF60_RS05275 PF07724 AAA domain (Cdc48 subfamily) CF60_RS05280 PF05362 Lon protease (S16) C-terminal proteolytic domain CF60_RS05280 PF02190 ATP-dependent protease La (LON) substrate-binding domain CF60_RS05280 PF00004 ATPase family associated with various cellular activities (AAA) CF60_RS05285 PF00216 Bacterial DNA-binding protein CF60_RS05290 PF13145 PPIC-type PPIASE domain CF60_RS05305 PF06508 Queuosine biosynthesis protein QueC CF60_RS05310 PF12793 Sugar transport-related sRNA regulator N-term CF60_RS05310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF60_RS05320 PF13404 AsnC-type helix-turn-helix domain CF60_RS05320 PF01037 Lrp/AsnC ligand binding domain CF60_RS05325 PF00664 ABC transporter transmembrane region CF60_RS05325 PF00005 ABC transporter CF60_RS05330 PF00005 ABC transporter CF60_RS05330 PF00664 ABC transporter transmembrane region CF60_RS05335 PF00543 Nitrogen regulatory protein P-II CF60_RS05340 PF00909 Ammonium Transporter Family CF60_RS05350 PF09619 Type III secretion system lipoprotein chaperone (YscW) CF60_RS05355 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CF60_RS05360 PF07237 Protein of unknown function (DUF1428) CF60_RS05365 PF12792 CSS motif domain associated with EAL CF60_RS05365 PF00563 EAL domain CF60_RS05370 PF10777 Inner membrane protein YlaC CF60_RS05375 PF14602 Hexapeptide repeat of succinyl-transferase CF60_RS05375 PF12464 Maltose acetyltransferase CF60_RS05380 PF05321 Haemolysin expression modulating protein CF60_RS05385 PF10757 Biofilm formation regulator YbaJ CF60_RS05390 PF00873 AcrB/AcrD/AcrF family CF60_RS05395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CF60_RS05395 PF00529 HlyD membrane-fusion protein of T1SS CF60_RS05400 PF08361 MAATS-type transcriptional repressor, C-terminal region CF60_RS05400 PF00440 Bacterial regulatory proteins, tetR family CF60_RS05405 PF12795 Mechanosensitive ion channel porin domain CF60_RS05405 PF12794 Mechanosensitive ion channel inner membrane domain 1 CF60_RS05405 PF00924 Mechanosensitive ion channel CF60_RS05410 PF10689 Protein of unknown function (DUF2496) CF60_RS05415 PF07445 Primosomal replication protein priC CF60_RS05420 PF04304 Protein of unknown function (DUF454) CF60_RS05425 PF00156 Phosphoribosyl transferase domain CF60_RS05430 PF12169 DNA polymerase III subunits gamma and tau domain III CF60_RS05430 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CF60_RS05430 PF12170 DNA polymerase III tau subunit V interacting with alpha CF60_RS05435 PF02575 YbaB/EbfC DNA-binding family CF60_RS05440 PF13662 Toprim domain CF60_RS05440 PF02132 RecR protein CF60_RS05445 PF00183 Hsp90 protein CF60_RS05445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS05450 PF05191 Adenylate kinase, active site lid CF60_RS05455 PF00762 Ferrochelatase CF60_RS05460 PF07859 alpha/beta hydrolase fold CF60_RS05465 PF00294 pfkB family carbohydrate kinase CF60_RS05470 PF00999 Sodium/hydrogen exchanger family CF60_RS05470 PF02254 TrkA-N domain CF60_RS05475 PF07690 Major Facilitator Superfamily CF60_RS05485 PF04073 Aminoacyl-tRNA editing domain CF60_RS05490 PF01963 TraB family CF60_RS05495 PF00403 Heavy-metal-associated domain CF60_RS05500 PF04960 Glutaminase CF60_RS05505 PF13520 Amino acid permease CF60_RS05525 PF03412 Peptidase C39 family CF60_RS05525 PF00005 ABC transporter CF60_RS05525 PF00664 ABC transporter transmembrane region CF60_RS05530 PF00529 HlyD membrane-fusion protein of T1SS CF60_RS05535 PF13411 MerR HTH family regulatory protein CF60_RS05560 PF01957 NfeD-like C-terminal, partner-binding CF60_RS05565 PF16200 C-terminal region of band_7 CF60_RS05565 PF01145 SPFH domain / Band 7 family CF60_RS05570 PF00005 ABC transporter CF60_RS05575 PF03649 Uncharacterised protein family (UPF0014) CF60_RS05585 PF00106 short chain dehydrogenase CF60_RS05590 PF13472 GDSL-like Lipase/Acylhydrolase family CF60_RS05595 PF00005 ABC transporter CF60_RS05605 PF03527 RHS protein CF60_RS05605 PF14220 Domain of unknown function (DUF4329) CF60_RS05605 PF05593 RHS Repeat CF60_RS05625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS05625 PF03466 LysR substrate binding domain CF60_RS05630 PF04115 Ureidoglycolate lyase CF60_RS05635 PF09339 IclR helix-turn-helix domain CF60_RS05635 PF01614 Bacterial transcriptional regulator CF60_RS05640 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CF60_RS05640 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CF60_RS05640 PF00205 Thiamine pyrophosphate enzyme, central domain CF60_RS05645 PF01261 Xylose isomerase-like TIM barrel CF60_RS05650 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CF60_RS05650 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CF60_RS05655 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CF60_RS05660 PF01979 Amidohydrolase family CF60_RS05665 PF00860 Permease family CF60_RS05670 PF02595 Glycerate kinase family CF60_RS05675 PF05899 Protein of unknown function (DUF861) CF60_RS05675 PF07883 Cupin domain CF60_RS05680 PF01546 Peptidase family M20/M25/M40 CF60_RS05685 PF02615 Malate/L-lactate dehydrogenase CF60_RS05690 PF02629 CoA binding domain CF60_RS05690 PF00549 CoA-ligase CF60_RS05695 PF06545 Protein of unknown function (DUF1116) CF60_RS05700 PF11392 Protein of unknown function (DUF2877) CF60_RS05705 PF00696 Amino acid kinase family CF60_RS05710 PF02222 ATP-grasp domain CF60_RS05710 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CF60_RS05715 PF00731 AIR carboxylase CF60_RS05720 PF12850 Calcineurin-like phosphoesterase superfamily domain CF60_RS05725 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CF60_RS05730 PF01406 tRNA synthetases class I (C) catalytic domain CF60_RS05730 PF09190 DALR domain CF60_RS05735 PF04307 LexA-binding, inner membrane-associated putative hydrolase CF60_RS05745 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CF60_RS05745 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CF60_RS05750 PF00419 Fimbrial protein CF60_RS05755 PF02753 Pili assembly chaperone PapD, C-terminal domain CF60_RS05755 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CF60_RS05760 PF13954 PapC N-terminal domain CF60_RS05760 PF13953 PapC C-terminal domain CF60_RS05760 PF00577 Outer membrane usher protein CF60_RS05765 PF00419 Fimbrial protein CF60_RS05770 PF00419 Fimbrial protein CF60_RS05775 PF00196 Bacterial regulatory proteins, luxR family CF60_RS05775 PF00072 Response regulator receiver domain CF60_RS05785 PF00589 Phage integrase family CF60_RS05840 PF00717 Peptidase S24-like CF60_RS05840 PF01381 Helix-turn-helix CF60_RS05860 PF06992 Replication protein P CF60_RS05870 PF00893 Small Multidrug Resistance protein CF60_RS05880 PF07508 Recombinase CF60_RS05880 PF13408 Recombinase zinc beta ribbon domain CF60_RS05880 PF00239 Resolvase, N terminal domain CF60_RS05885 PF01161 Phosphatidylethanolamine-binding protein CF60_RS05890 PF12833 Helix-turn-helix domain CF60_RS05905 PF07102 Protein of unknown function (DUF1364) CF60_RS05910 PF05866 Endodeoxyribonuclease RusA CF60_RS05920 PF06530 Phage antitermination protein Q CF60_RS05925 PF00267 Gram-negative porin CF60_RS05930 PF04971 Bacteriophage P21 holin S CF60_RS05935 PF00959 Phage lysozyme CF60_RS05940 PF03245 Bacteriophage Rz lysis protein CF60_RS05955 PF07166 Protein of unknown function (DUF1398) CF60_RS05960 PF13132 Domain of unknown function (DUF3950) CF60_RS05975 PF07471 Phage DNA packaging protein Nu1 CF60_RS05980 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CF60_RS05985 PF02831 gpW CF60_RS05995 PF01957 NfeD-like C-terminal, partner-binding CF60_RS05995 PF01972 Serine dehydrogenase proteinase CF60_RS06005 PF03864 Phage major capsid protein E CF60_RS06045 PF06791 Prophage tail length tape measure protein CF60_RS06075 PF06316 Enterobacterial Ail/Lom protein CF60_RS06105 PF03335 Phage tail fibre repeat CF60_RS06105 PF07484 Phage Tail Collar Domain CF60_RS06105 PF08400 Prophage tail fibre N-terminal CF60_RS06125 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CF60_RS06130 PF12833 Helix-turn-helix domain CF60_RS06135 PF01278 Omptin family CF60_RS06145 PF12833 Helix-turn-helix domain CF60_RS06150 PF14488 Domain of unknown function (DUF4434) CF60_RS06155 PF13283 Bacteriophage N adsorption protein A C-term CF60_RS06160 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CF60_RS06160 PF13632 Glycosyl transferase family group 2 CF60_RS06165 PF13808 DDE_Tnp_1-associated CF60_RS06165 PF01609 Transposase DDE domain CF60_RS06175 PF05593 RHS Repeat CF60_RS06175 PF05488 PAAR motif CF60_RS06220 PF04717 Type VI secretion system, phage-baseplate injector CF60_RS06225 PF00672 HAMP domain CF60_RS06225 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS06225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS06230 PF00072 Response regulator receiver domain CF60_RS06230 PF00486 Transcriptional regulatory protein, C terminal CF60_RS06235 PF02321 Outer membrane efflux protein CF60_RS06240 PF11604 Copper binding periplasmic protein CusF CF60_RS06245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CF60_RS06245 PF00529 HlyD membrane-fusion protein of T1SS CF60_RS06250 PF00873 AcrB/AcrD/AcrF family CF60_RS06255 PF00324 Amino acid permease CF60_RS06260 PF00924 Mechanosensitive ion channel CF60_RS06265 PF00881 Nitroreductase family CF60_RS06270 PF04237 YjbR CF60_RS06275 PF06643 Protein of unknown function (DUF1158) CF60_RS06280 PF04107 Glutamate-cysteine ligase family 2(GCS2) CF60_RS06295 PF00665 Integrase core domain CF60_RS06295 PF13276 HTH-like domain CF60_RS06295 PF13333 Integrase core domain CF60_RS06300 PF01848 Hok/gef family CF60_RS06305 PF01648 4'-phosphopantetheinyl transferase superfamily CF60_RS06305 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CF60_RS06315 PF07715 TonB-dependent Receptor Plug Domain CF60_RS06315 PF00593 TonB dependent receptor CF60_RS06320 PF00756 Putative esterase CF60_RS06320 PF11806 Domain of unknown function (DUF3327) CF60_RS06325 PF03621 MbtH-like protein CF60_RS06330 PF00501 AMP-binding enzyme CF60_RS06330 PF00975 Thioesterase domain CF60_RS06330 PF13193 AMP-binding enzyme C-terminal domain CF60_RS06330 PF00668 Condensation domain CF60_RS06330 PF00550 Phosphopantetheine attachment site CF60_RS06335 PF02706 Chain length determinant protein CF60_RS06340 PF00005 ABC transporter CF60_RS06345 PF01032 FecCD transport family CF60_RS06350 PF01032 FecCD transport family CF60_RS06360 PF01497 Periplasmic binding protein CF60_RS06365 PF00425 chorismate binding enzyme CF60_RS06370 PF13193 AMP-binding enzyme C-terminal domain CF60_RS06370 PF00501 AMP-binding enzyme CF60_RS06375 PF00857 Isochorismatase family CF60_RS06375 PF00550 Phosphopantetheine attachment site CF60_RS06385 PF03061 Thioesterase superfamily CF60_RS06390 PF13722 5TM C-terminal transporter carbon starvation CstA CF60_RS06390 PF02554 Carbon starvation protein CstA CF60_RS06395 PF04328 Selenoprotein, putative CF60_RS06400 PF00465 Iron-containing alcohol dehydrogenase CF60_RS06405 PF00155 Aminotransferase class I and II CF60_RS06410 PF02195 ParB-like nuclease domain CF60_RS06415 PF01507 Phosphoadenosine phosphosulfate reductase family CF60_RS06415 PF11922 Domain of unknown function (DUF3440) CF60_RS06420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS06420 PF03466 LysR substrate binding domain CF60_RS06425 PF13098 Thioredoxin-like domain CF60_RS06430 PF00578 AhpC/TSA family CF60_RS06430 PF10417 C-terminal domain of 1-Cys peroxiredoxin CF60_RS06435 PF13192 Thioredoxin domain CF60_RS06435 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS06440 PF00582 Universal stress protein family CF60_RS06445 PF01272 Transcription elongation factor, GreA/GreB, C-term CF60_RS06445 PF14760 Rnk N-terminus CF60_RS06450 PF00445 Ribonuclease T2 family CF60_RS06455 PF00939 Sodium:sulfate symporter transmembrane region CF60_RS06460 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CF60_RS06465 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CF60_RS06470 PF04223 Citrate lyase, alpha subunit (CitF) CF60_RS06475 PF03328 HpcH/HpaI aldolase/citrate lyase family CF60_RS06480 PF06857 Malonate decarboxylase delta subunit (MdcD) CF60_RS06485 PF08218 Citrate lyase ligase C-terminal domain CF60_RS06490 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CF60_RS06490 PF17203 Single cache domain 3 CF60_RS06490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS06490 PF00989 PAS fold CF60_RS06495 PF00072 Response regulator receiver domain CF60_RS06495 PF12431 Transcriptional regulator CF60_RS06500 PF03606 C4-dicarboxylate anaerobic carrier CF60_RS06505 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CF60_RS06510 PF00313 'Cold-shock' DNA-binding domain CF60_RS06515 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CF60_RS06520 PF00795 Carbon-nitrogen hydrolase CF60_RS06525 PF02416 mttA/Hcf106 family CF60_RS06530 PF04055 Radical SAM superfamily CF60_RS06530 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CF60_RS06535 PF03466 LysR substrate binding domain CF60_RS06535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS06545 PF03099 Biotin/lipoate A/B protein ligase family CF60_RS06550 PF04359 Protein of unknown function (DUF493) CF60_RS06555 PF07943 Penicillin-binding protein 5, C-terminal domain CF60_RS06555 PF00768 D-alanyl-D-alanine carboxypeptidase CF60_RS06560 PF03330 Lytic transglycolase CF60_RS06560 PF05036 Sporulation related domain CF60_RS06565 PF01098 Cell cycle protein CF60_RS06570 PF00905 Penicillin binding protein transpeptidase domain CF60_RS06570 PF03717 Penicillin-binding Protein dimerisation domain CF60_RS06575 PF02590 Predicted SPOUT methyltransferase CF60_RS06585 PF00300 Histidine phosphatase superfamily (branch 1) CF60_RS06590 PF01467 Cytidylyltransferase-like CF60_RS06595 PF06144 DNA polymerase III, delta subunit CF60_RS06595 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CF60_RS06600 PF04390 Lipopolysaccharide-assembly CF60_RS06605 PF08264 Anticodon-binding domain of tRNA CF60_RS06605 PF00133 tRNA synthetases class I (I, L, M and V) CF60_RS06605 PF13603 Leucyl-tRNA synthetase, Domain 2 CF60_RS06610 PF07295 Zinc-ribbon containing domain CF60_RS06615 PF01156 Inosine-uridine preferring nucleoside hydrolase CF60_RS06620 PF00005 ABC transporter CF60_RS06625 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS06630 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS06635 PF00497 Bacterial extracellular solute-binding proteins, family 3 CF60_RS06640 PF00795 Carbon-nitrogen hydrolase CF60_RS06645 PF00571 CBS domain CF60_RS06645 PF03471 Transporter associated domain CF60_RS06650 PF02130 Uncharacterized protein family UPF0054 CF60_RS06655 PF02562 PhoH-like protein CF60_RS06660 PF04055 Radical SAM superfamily CF60_RS06660 PF01938 TRAM domain CF60_RS06660 PF00919 Uncharacterized protein family UPF0004 CF60_RS06665 PF01494 FAD binding domain CF60_RS06705 PF13537 Glutamine amidotransferase domain CF60_RS06705 PF00733 Asparagine synthase CF60_RS06710 PF13344 Haloacid dehalogenase-like hydrolase CF60_RS06715 PF01047 MarR family CF60_RS06715 PF00480 ROK family CF60_RS06720 PF01979 Amidohydrolase family CF60_RS06725 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CF60_RS06730 PF02378 Phosphotransferase system, EIIC CF60_RS06730 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CF60_RS06730 PF00367 phosphotransferase system, EIIB CF60_RS06735 PF00749 tRNA synthetases class I (E and Q), catalytic domain CF60_RS06735 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CF60_RS06740 PF03573 outer membrane porin, OprD family CF60_RS06745 PF13982 YbfN-like lipoprotein CF60_RS06750 PF01475 Ferric uptake regulator family CF60_RS06765 PF00258 Flavodoxin CF60_RS06770 PF01402 Ribbon-helix-helix protein, copG family CF60_RS06775 PF12697 Alpha/beta hydrolase family CF60_RS06780 PF17206 SeqA protein N-terminal domain CF60_RS06780 PF03925 SeqA protein C-terminal domain CF60_RS06785 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CF60_RS06785 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CF60_RS06785 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CF60_RS06785 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CF60_RS06790 PF01797 Transposase IS200 like CF60_RS06800 PF00486 Transcriptional regulatory protein, C terminal CF60_RS06800 PF00072 Response regulator receiver domain CF60_RS06810 PF02669 K+-transporting ATPase, c chain CF60_RS06820 PF03814 Potassium-transporting ATPase A subunit CF60_RS06825 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) CF60_RS06830 PF10725 Protein of unknown function (DUF2517) CF60_RS06835 PF03527 RHS protein CF60_RS06835 PF05593 RHS Repeat CF60_RS06845 PF08349 Protein of unknown function (DUF1722) CF60_RS06850 PF03441 FAD binding domain of DNA photolyase CF60_RS06850 PF00875 DNA photolyase CF60_RS06855 PF00854 POT family CF60_RS06860 PF01784 NIF3 (NGG1p interacting factor 3) CF60_RS06865 PF02682 Carboxyltransferase domain, subdomain C and D CF60_RS06870 PF02626 Carboxyltransferase domain, subdomain A and B CF60_RS06875 PF03746 LamB/YcsF family CF60_RS06880 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CF60_RS06880 PF06827 Zinc finger found in FPG and IleRS CF60_RS06880 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CF60_RS06885 PF05145 Transition state regulatory protein AbrB CF60_RS06890 PF00419 Fimbrial protein CF60_RS06895 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CF60_RS06895 PF02753 Pili assembly chaperone PapD, C-terminal domain CF60_RS06900 PF00577 Outer membrane usher protein CF60_RS06900 PF13954 PapC N-terminal domain CF60_RS06900 PF13953 PapC C-terminal domain CF60_RS06905 PF00419 Fimbrial protein CF60_RS06910 PF00285 Citrate synthase, C-terminal domain CF60_RS06920 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CF60_RS06925 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CF60_RS06930 PF02910 Fumarate reductase flavoprotein C-term CF60_RS06930 PF00890 FAD binding domain CF60_RS06935 PF13085 2Fe-2S iron-sulfur cluster binding domain CF60_RS06945 PF16870 2-oxoglutarate dehydrogenase C-terminal CF60_RS06945 PF00676 Dehydrogenase E1 component CF60_RS06945 PF16078 2-oxoglutarate dehydrogenase N-terminus CF60_RS06945 PF02779 Transketolase, pyrimidine binding domain CF60_RS06950 PF02910 Fumarate reductase flavoprotein C-term CF60_RS06950 PF00890 FAD binding domain CF60_RS06960 PF16870 2-oxoglutarate dehydrogenase C-terminal CF60_RS06960 PF16078 2-oxoglutarate dehydrogenase N-terminus CF60_RS06960 PF02779 Transketolase, pyrimidine binding domain CF60_RS06960 PF00676 Dehydrogenase E1 component CF60_RS06965 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CF60_RS06965 PF00364 Biotin-requiring enzyme CF60_RS06965 PF02817 e3 binding domain CF60_RS06970 PF00549 CoA-ligase CF60_RS06970 PF08442 ATP-grasp domain CF60_RS06975 PF00549 CoA-ligase CF60_RS06975 PF02629 CoA binding domain CF60_RS06985 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CF60_RS06985 PF12557 Cob(I)alamin adenosyltransferase N terminal CF60_RS07005 PF06368 Methylaspartate mutase E chain (MutE) CF60_RS07010 PF13941 MutL protein CF60_RS07015 PF02310 B12 binding domain CF60_RS07035 PF01654 Cytochrome bd terminal oxidase subunit I CF60_RS07040 PF02322 Cytochrome bd terminal oxidase subunit II CF60_RS07045 PF08173 Membrane bound YbgT-like protein CF60_RS07050 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CF60_RS07055 PF03061 Thioesterase superfamily CF60_RS07060 PF01618 MotA/TolQ/ExbB proton channel family CF60_RS07065 PF02472 Biopolymer transport protein ExbD/TolR CF60_RS07070 PF06519 TolA C-terminal CF60_RS07075 PF07676 WD40-like Beta Propeller Repeat CF60_RS07075 PF04052 TolB amino-terminal domain CF60_RS07080 PF00691 OmpA family CF60_RS07085 PF13174 Tetratricopeptide repeat CF60_RS07085 PF16331 TolA binding protein trimerisation CF60_RS07125 PF02445 Quinolinate synthetase A protein CF60_RS07130 PF04973 Nicotinamide mononucleotide transporter CF60_RS07135 PF01545 Cation efflux family CF60_RS07140 PF13985 YbgS-like protein CF60_RS07150 PF00793 DAHP synthetase I family CF60_RS07155 PF00300 Histidine phosphatase superfamily (branch 1) CF60_RS07160 PF01263 Aldose 1-epimerase CF60_RS07165 PF10509 Galactokinase galactose-binding signature CF60_RS07165 PF08544 GHMP kinases C terminal CF60_RS07165 PF00288 GHMP kinases N terminal domain CF60_RS07170 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CF60_RS07170 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CF60_RS07175 PF16363 GDP-mannose 4,6 dehydratase CF60_RS07180 PF00005 ABC transporter CF60_RS07190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS07190 PF03459 TOBE domain CF60_RS07195 PF10766 Multidrug efflux pump-associated protein AcrZ CF60_RS07205 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS07210 PF00005 ABC transporter CF60_RS07210 PF03459 TOBE domain CF60_RS07220 PF10282 Lactonase, 7-bladed beta-propeller CF60_RS07230 PF04303 PrpF protein CF60_RS07235 PF00939 Sodium:sulfate symporter transmembrane region CF60_RS07240 PF00330 Aconitase family (aconitate hydratase) CF60_RS07240 PF00694 Aconitase C-terminal domain CF60_RS07245 PF01095 Pectinesterase CF60_RS07250 PF01161 Phosphatidylethanolamine-binding protein CF60_RS07255 PF00202 Aminotransferase class-III CF60_RS07260 PF04055 Radical SAM superfamily CF60_RS07260 PF06968 Biotin and Thiamin Synthesis associated domain CF60_RS07265 PF00155 Aminotransferase class I and II CF60_RS07270 PF08241 Methyltransferase domain CF60_RS07280 PF00271 Helicase conserved C-terminal domain CF60_RS07280 PF04851 Type III restriction enzyme, res subunit CF60_RS07280 PF02151 UvrB/uvrC motif CF60_RS07280 PF17757 UvrB interaction domain CF60_RS07280 PF12344 Ultra-violet resistance protein B CF60_RS07285 PF01933 Uncharacterised protein family UPF0052 CF60_RS07295 PF06463 Molybdenum Cofactor Synthesis C CF60_RS07295 PF04055 Radical SAM superfamily CF60_RS07300 PF00994 Probable molybdopterin binding domain CF60_RS07305 PF01967 MoaC family CF60_RS07310 PF02597 ThiS family CF60_RS07315 PF02391 MoaE protein CF60_RS07320 PF01027 Inhibitor of apoptosis-promoting Bax1 CF60_RS07325 PF01027 Inhibitor of apoptosis-promoting Bax1 CF60_RS07330 PF03706 Lysylphosphatidylglycerol synthase TM region CF60_RS07335 PF13091 PLD-like domain CF60_RS07340 PF03372 Endonuclease/Exonuclease/phosphatase family CF60_RS07345 PF11076 Putative inner membrane protein YbhQ CF60_RS07360 PF00005 ABC transporter CF60_RS07365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CF60_RS07370 PF09209 Tetracyclin repressor-like, C-terminal domain CF60_RS07370 PF00440 Bacterial regulatory proteins, tetR family CF60_RS07375 PF00270 DEAD/DEAH box helicase CF60_RS07375 PF00271 Helicase conserved C-terminal domain CF60_RS07390 PF00270 DEAD/DEAH box helicase CF60_RS07390 PF06733 DEAD_2 CF60_RS07390 PF13307 Helicase C-terminal domain CF60_RS07395 PF02885 Glycosyl transferase family, helical bundle domain CF60_RS07400 PF02615 Malate/L-lactate dehydrogenase CF60_RS07405 PF07338 Protein of unknown function (DUF1471) CF60_RS07410 PF01258 Prokaryotic dksA/traR C4-type zinc finger CF60_RS07415 PF18331 PKHD-type hydroxylase C-terminal domain CF60_RS07415 PF13640 2OG-Fe(II) oxygenase superfamily CF60_RS07420 PF00593 TonB dependent receptor CF60_RS07420 PF07715 TonB-dependent Receptor Plug Domain CF60_RS07425 PF07338 Protein of unknown function (DUF1471) CF60_RS07430 PF05971 RNA methyltransferase CF60_RS07435 PF00924 Mechanosensitive ion channel CF60_RS07445 PF00005 ABC transporter CF60_RS07450 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS07455 PF00497 Bacterial extracellular solute-binding proteins, family 3 CF60_RS07465 PF00210 Ferritin-like domain CF60_RS07470 PF00892 EamA-like transporter family CF60_RS07475 PF13505 Outer membrane protein beta-barrel domain CF60_RS07480 PF00884 Sulfatase CF60_RS07490 PF01325 Iron dependent repressor, N-terminal DNA binding domain CF60_RS07490 PF02742 Iron dependent repressor, metal binding and dimerisation domain CF60_RS07495 PF03600 Citrate transporter CF60_RS07500 PF17969 L,D-transpeptidase C-terminal domain CF60_RS07500 PF03734 L,D-transpeptidase catalytic domain CF60_RS07505 PF00005 ABC transporter CF60_RS07505 PF12848 ABC transporter CF60_RS07510 PF16338 Domain of unknown function (DUF4968) CF60_RS07510 PF17137 Domain of unknown function (DUF5110) CF60_RS07510 PF13802 Galactose mutarotase-like CF60_RS07510 PF01055 Glycosyl hydrolases family 31 CF60_RS07515 PF07690 Major Facilitator Superfamily CF60_RS07525 PF00356 Bacterial regulatory proteins, lacI family CF60_RS07540 PF01228 Glycine radical CF60_RS07540 PF02901 Pyruvate formate lyase-like CF60_RS07545 PF04055 Radical SAM superfamily CF60_RS07550 PF00923 Transaldolase/Fructose-6-phosphate aldolase CF60_RS07555 PF00899 ThiF family CF60_RS07560 PF03453 MoeA N-terminal region (domain I and II) CF60_RS07560 PF03454 MoeA C-terminal region (domain IV) CF60_RS07560 PF00994 Probable molybdopterin binding domain CF60_RS07565 PF01112 Asparaginase CF60_RS07570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CF60_RS07570 PF00005 ABC transporter CF60_RS07575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF60_RS07580 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS07585 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS07585 PF12911 N-terminal TM domain of oligopeptide transport permease C CF60_RS07590 PF00563 EAL domain CF60_RS07590 PF17153 Periplasmic sensor domain, extracellular CF60_RS07595 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS07595 PF17156 Gammaproteobacterial periplasmic sensor domain CF60_RS07600 PF00919 Uncharacterized protein family UPF0004 CF60_RS07600 PF18693 TRAM domain CF60_RS07600 PF04055 Radical SAM superfamily CF60_RS07605 PF10799 Biofilm formation protein (YliH/bssR) CF60_RS07610 PF07995 Glucose / Sorbosone dehydrogenase CF60_RS07615 PF13417 Glutathione S-transferase, N-terminal domain CF60_RS07615 PF00043 Glutathione S-transferase, C-terminal domain CF60_RS07620 PF07943 Penicillin-binding protein 5, C-terminal domain CF60_RS07620 PF00768 D-alanyl-D-alanine carboxypeptidase CF60_RS07625 PF08220 DeoR-like helix-turn-helix domain CF60_RS07625 PF00455 DeoR C terminal sensor domain CF60_RS07630 PF01569 PAP2 superfamily CF60_RS07635 PF07690 Major Facilitator Superfamily CF60_RS07650 PF07690 Major Facilitator Superfamily CF60_RS07655 PF00440 Bacterial regulatory proteins, tetR family CF60_RS07660 PF02080 TrkA-C domain CF60_RS07660 PF06826 Predicted Permease Membrane Region CF60_RS07665 PF11045 Putative inner membrane protein of Enterobacteriaceae CF60_RS07670 PF00462 Glutaredoxin CF60_RS07675 PF07214 Protein of unknown function (DUF1418) CF60_RS07680 PF00881 Nitroreductase family CF60_RS07685 PF18030 RimK PreATP-grasp domain CF60_RS07685 PF08443 RimK-like ATP-grasp domain CF60_RS07690 PF10722 Putative bacterial sensory transduction regulator CF60_RS07700 PF13416 Bacterial extracellular solute-binding protein CF60_RS07705 PF00005 ABC transporter CF60_RS07705 PF08402 TOBE domain CF60_RS07710 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS07715 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS07720 PF10767 Protein of unknown function (DUF2593) CF60_RS07725 PF05958 tRNA (Uracil-5-)-methyltransferase CF60_RS07735 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS07740 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS07745 PF00497 Bacterial extracellular solute-binding proteins, family 3 CF60_RS07750 PF00005 ABC transporter CF60_RS07755 PF12883 Protein of unknown function (DUF3828) CF60_RS07765 PF11066 Protein of unknown function (DUF2867) CF60_RS07765 PF13460 NAD(P)H-binding CF60_RS07785 PF13460 NAD(P)H-binding CF60_RS07785 PF11066 Protein of unknown function (DUF2867) CF60_RS07800 PF00111 2Fe-2S iron-sulfur cluster binding domain CF60_RS07800 PF00175 Oxidoreductase NAD-binding domain CF60_RS07800 PF00970 Oxidoreductase FAD-binding domain CF60_RS07805 PF03063 Prismane/CO dehydrogenase family CF60_RS07810 PF03956 Lysine exporter LysO CF60_RS07815 PF00230 Major intrinsic protein CF60_RS07825 PF11398 Protein of unknown function (DUF2813) CF60_RS07835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CF60_RS07840 PF12704 MacB-like periplasmic core domain CF60_RS07840 PF02687 FtsX-like permease family CF60_RS07840 PF00005 ABC transporter CF60_RS07845 PF00313 'Cold-shock' DNA-binding domain CF60_RS07850 PF02617 ATP-dependent Clp protease adaptor protein ClpS CF60_RS07855 PF10431 C-terminal, D2-small domain, of ClpB protein CF60_RS07855 PF02861 Clp amino terminal domain, pathogenicity island component CF60_RS07855 PF17871 AAA lid domain CF60_RS07855 PF07724 AAA domain (Cdc48 subfamily) CF60_RS07855 PF00004 ATPase family associated with various cellular activities (AAA) CF60_RS07865 PF01176 Translation initiation factor 1A / IF-1 CF60_RS07870 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CF60_RS07875 PF00005 ABC transporter CF60_RS07875 PF00664 ABC transporter transmembrane region CF60_RS07880 PF00005 ABC transporter CF60_RS07880 PF00664 ABC transporter transmembrane region CF60_RS07885 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS07890 PF01037 Lrp/AsnC ligand binding domain CF60_RS07895 PF09397 Ftsk gamma domain CF60_RS07895 PF01580 FtsK/SpoIIIE family CF60_RS07895 PF17854 FtsK alpha domain CF60_RS07895 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CF60_RS07900 PF03548 Outer membrane lipoprotein carrier protein LolA CF60_RS07905 PF12002 MgsA AAA+ ATPase C terminal CF60_RS07905 PF16193 AAA C-terminal domain CF60_RS07905 PF00004 ATPase family associated with various cellular activities (AAA) CF60_RS07910 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CF60_RS07910 PF02403 Seryl-tRNA synthetase N-terminal domain CF60_RS07915 PF01568 Molydopterin dinucleotide binding domain CF60_RS07915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS07915 PF00384 Molybdopterin oxidoreductase CF60_RS07920 PF13247 4Fe-4S dicluster domain CF60_RS07920 PF12800 4Fe-4S binding domain CF60_RS07925 PF04976 DMSO reductase anchor subunit (DmsC) CF60_RS07930 PF00857 Isochorismatase family CF60_RS07935 PF07690 Major Facilitator Superfamily CF60_RS07940 PF13520 Amino acid permease CF60_RS07945 PF04055 Radical SAM superfamily CF60_RS07950 PF02901 Pyruvate formate lyase-like CF60_RS07950 PF01228 Glycine radical CF60_RS07955 PF01226 Formate/nitrite transporter CF60_RS07960 PF18381 YcaO cyclodehydratase C-terminal domain CF60_RS07960 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CF60_RS07965 PF04239 Protein of unknown function (DUF421) CF60_RS07970 PF00266 Aminotransferase class-V CF60_RS07975 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CF60_RS07990 PF01797 Transposase IS200 like CF60_RS07995 PF01435 Peptidase family M48 CF60_RS08000 PF02224 Cytidylate kinase CF60_RS08005 PF00575 S1 RNA binding domain CF60_RS08010 PF00216 Bacterial DNA-binding protein CF60_RS08025 PF00575 S1 RNA binding domain CF60_RS08040 PF00005 ABC transporter CF60_RS08040 PF00664 ABC transporter transmembrane region CF60_RS08045 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CF60_RS08050 PF06224 Winged helix DNA-binding domain CF60_RS08055 PF03966 Trm112p-like protein CF60_RS08060 PF02348 Cytidylyltransferase CF60_RS08065 PF01636 Phosphotransferase enzyme family CF60_RS08070 PF02698 DUF218 domain CF60_RS08075 PF13847 Methyltransferase domain CF60_RS08080 PF03882 MukF winged-helix domain CF60_RS08080 PF17193 MukF C-terminal domain CF60_RS08080 PF17192 MukF middle domain CF60_RS08085 PF04288 MukE-like family CF60_RS08090 PF16330 MukB hinge domain CF60_RS08090 PF04310 MukB N-terminal CF60_RS08095 PF01471 Putative peptidoglycan binding domain CF60_RS08095 PF03734 L,D-transpeptidase catalytic domain CF60_RS08100 PF05951 Bacterial protein of unknown function (DUF882) CF60_RS08105 PF00753 Metallo-beta-lactamase superfamily CF60_RS08110 PF00155 Aminotransferase class I and II CF60_RS08120 PF00267 Gram-negative porin CF60_RS08140 PF00152 tRNA synthetases class II (D, K and N) CF60_RS08140 PF01336 OB-fold nucleic acid binding domain CF60_RS08145 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CF60_RS08145 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CF60_RS08150 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CF60_RS08150 PF11940 Domain of unknown function (DUF3458) Ig-like fold CF60_RS08150 PF01433 Peptidase family M1 domain CF60_RS08155 PF13276 HTH-like domain CF60_RS08155 PF00665 Integrase core domain CF60_RS08155 PF13333 Integrase core domain CF60_RS08165 PF00296 Luciferase-like monooxygenase CF60_RS08170 PF09084 NMT1/THI5 like CF60_RS08175 PF03358 NADPH-dependent FMN reductase CF60_RS08180 PF01180 Dihydroorotate dehydrogenase CF60_RS08185 PF07126 Cell-division protein ZapC CF60_RS08190 PF03476 MOSC N-terminal beta barrel domain CF60_RS08190 PF03473 MOSC domain CF60_RS08190 PF00111 2Fe-2S iron-sulfur cluster binding domain CF60_RS08195 PF10672 S-adenosylmethionine-dependent methyltransferase CF60_RS08195 PF02926 THUMP domain CF60_RS08195 PF01170 Putative RNA methylase family UPF0020 CF60_RS08200 PF12848 ABC transporter CF60_RS08200 PF16326 ABC transporter C-terminal domain CF60_RS08200 PF00005 ABC transporter CF60_RS08205 PF04403 Paraquat-inducible protein A CF60_RS08210 PF02470 MlaD protein CF60_RS08215 PF03886 ABC-type transport auxiliary lipoprotein component CF60_RS08220 PF04957 Ribosome modulation factor CF60_RS08225 PF07977 FabA-like domain CF60_RS08230 PF05362 Lon protease (S16) C-terminal proteolytic domain CF60_RS08230 PF13654 AAA domain CF60_RS08235 PF17414 MatP C-terminal ribbon-helix-helix domain CF60_RS08235 PF06303 MatP N-terminal domain CF60_RS08240 PF00691 OmpA family CF60_RS08240 PF01389 OmpA-like transmembrane domain CF60_RS08250 PF03846 Cell division inhibitor SulA CF60_RS08255 PF04994 TfoX C-terminal domain CF60_RS08255 PF04993 TfoX N-terminal domain CF60_RS08260 PF12805 FUSC-like inner membrane protein yccS CF60_RS08265 PF03733 Inner membrane component domain CF60_RS08270 PF00580 UvrD/REP helicase N-terminal domain CF60_RS08270 PF12462 DNA helicase IV / RNA helicase N terminal CF60_RS08270 PF13361 UvrD-like helicase C-terminal domain CF60_RS08275 PF02142 MGS-like domain CF60_RS08280 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CF60_RS08290 PF13380 CoA binding domain CF60_RS08295 PF08755 Hemimethylated DNA-binding protein YccV like CF60_RS08300 PF17785 PUA-like domain CF60_RS08300 PF10672 S-adenosylmethionine-dependent methyltransferase CF60_RS08305 PF00708 Acylphosphatase CF60_RS08310 PF04358 DsrC like protein CF60_RS08315 PF01027 Inhibitor of apoptosis-promoting Bax1 CF60_RS08325 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CF60_RS08325 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CF60_RS08330 PF00374 Nickel-dependent hydrogenase CF60_RS08335 PF01292 Prokaryotic cytochrome b561 CF60_RS08340 PF01750 Hydrogenase maturation protease CF60_RS08345 PF07449 Hydrogenase-1 expression protein HyaE CF60_RS08350 PF04809 HupH hydrogenase expression protein, C-terminal conserved region CF60_RS08355 PF01654 Cytochrome bd terminal oxidase subunit I CF60_RS08360 PF02322 Cytochrome bd terminal oxidase subunit II CF60_RS08365 PF08173 Membrane bound YbgT-like protein CF60_RS08370 PF00328 Histidine phosphatase superfamily (branch 2) CF60_RS08375 PF00313 'Cold-shock' DNA-binding domain CF60_RS08380 PF00313 'Cold-shock' DNA-binding domain CF60_RS08385 PF15939 Putative antitoxin of bacterial toxin-antitoxin system CF60_RS08390 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system CF60_RS08395 PF00672 HAMP domain CF60_RS08395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS08395 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS08395 PF00072 Response regulator receiver domain CF60_RS08395 PF01627 Hpt domain CF60_RS08400 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CF60_RS08405 PF00072 Response regulator receiver domain CF60_RS08405 PF00486 Transcriptional regulatory protein, C terminal CF60_RS08410 PF03264 NapC/NirT cytochrome c family, N-terminal region CF60_RS08415 PF01568 Molydopterin dinucleotide binding domain CF60_RS08415 PF00384 Molybdopterin oxidoreductase CF60_RS08415 PF18364 Molybdopterin oxidoreductase N-terminal domain CF60_RS08420 PF02613 Nitrate reductase delta subunit CF60_RS08430 PF01556 DnaJ C terminal domain CF60_RS08430 PF00226 DnaJ domain CF60_RS08440 PF00328 Histidine phosphatase superfamily (branch 2) CF60_RS08445 PF13993 YccJ-like protein CF60_RS08450 PF03358 NADPH-dependent FMN reductase CF60_RS08460 PF10685 Stress-induced bacterial acidophilic repeat motif CF60_RS08465 PF00860 Permease family CF60_RS08470 PF01613 Flavin reductase like domain CF60_RS08475 PF00881 Nitroreductase family CF60_RS08480 PF12697 Alpha/beta hydrolase family CF60_RS08485 PF01042 Endoribonuclease L-PSP CF60_RS08490 PF00857 Isochorismatase family CF60_RS08495 PF00296 Luciferase-like monooxygenase CF60_RS08500 PF08362 YcdC-like protein, C-terminal region CF60_RS08500 PF00440 Bacterial regulatory proteins, tetR family CF60_RS08515 PF00474 Sodium:solute symporter family CF60_RS08525 PF03239 Iron permease FTR1 family CF60_RS08530 PF13473 Cupredoxin-like domain CF60_RS08530 PF09375 Imelysin CF60_RS08535 PF04261 Dyp-type peroxidase family CF60_RS08540 PF02562 PhoH-like protein CF60_RS08560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CF60_RS08565 PF02811 PHP domain CF60_RS08570 PF02613 Nitrate reductase delta subunit CF60_RS08575 PF06496 Protein of unknown function (DUF1097) CF60_RS08580 PF03783 Curli production assembly/transport component CsgG CF60_RS08585 PF10614 Type VIII secretion system (T8SS), CsgF protein CF60_RS08590 PF10627 Curli assembly protein CsgE CF60_RS08595 PF00196 Bacterial regulatory proteins, luxR family CF60_RS08605 PF07012 Curlin associated repeat CF60_RS08610 PF07012 Curlin associated repeat CF60_RS08615 PF10610 Thin aggregative fimbriae synthesis protein CF60_RS08625 PF01661 Macro domain CF60_RS08630 PF13091 PLD-like domain CF60_RS08635 PF01757 Acyltransferase family CF60_RS08650 PF04349 Periplasmic glucan biosynthesis protein, MdoG CF60_RS08655 PF00535 Glycosyl transferase family 2 CF60_RS08660 PF07119 Protein of unknown function (DUF1375) CF60_RS08665 PF13984 MsyB protein CF60_RS08675 PF07690 Major Facilitator Superfamily CF60_RS08680 PF03279 Bacterial lipid A biosynthesis acyltransferase CF60_RS08685 PF12368 Rhodanase C-terminal CF60_RS08685 PF17773 UPF0176 acylphosphatase like domain CF60_RS08685 PF00581 Rhodanese-like domain CF60_RS08690 PF04264 YceI-like domain CF60_RS08695 PF01292 Prokaryotic cytochrome b561 CF60_RS08700 PF10968 Protein of unknown function (DUF2770) CF60_RS08705 PF01266 FAD dependent oxidoreductase CF60_RS08710 PF13991 BssS protein family CF60_RS08715 PF01979 Amidohydrolase family CF60_RS08720 PF07273 Protein of unknown function (DUF1439) CF60_RS08725 PF04399 Glutaredoxin 2, C terminal domain CF60_RS08725 PF13417 Glutathione S-transferase, N-terminal domain CF60_RS08730 PF07690 Major Facilitator Superfamily CF60_RS08735 PF13302 Acetyltransferase (GNAT) domain CF60_RS08740 PF04337 Protein of unknown function, DUF480 CF60_RS08745 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CF60_RS08750 PF03023 Lipid II flippase MurJ CF60_RS08755 PF05130 FlgN protein CF60_RS08760 PF04316 Anti-sigma-28 factor, FlgM CF60_RS08765 PF13144 Chaperone for flagella basal body P-ring formation CF60_RS08770 PF00460 Flagella basal body rod protein CF60_RS08775 PF00460 Flagella basal body rod protein CF60_RS08775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CF60_RS08780 PF03963 Flagellar hook capping protein - N-terminal region CF60_RS08780 PF13860 FlgD Ig-like domain CF60_RS08780 PF13861 FlgD Tudor-like domain CF60_RS08785 PF07559 Flagellar basal body protein FlaE CF60_RS08785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CF60_RS08785 PF00460 Flagella basal body rod protein CF60_RS08790 PF00460 Flagella basal body rod protein CF60_RS08790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CF60_RS08795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CF60_RS08795 PF00460 Flagella basal body rod protein CF60_RS08800 PF02107 Flagellar L-ring protein CF60_RS08805 PF02119 Flagellar P-ring protein CF60_RS08810 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CF60_RS08810 PF10135 Rod binding protein CF60_RS08815 PF00460 Flagella basal body rod protein CF60_RS08815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CF60_RS08820 PF00669 Bacterial flagellin N-terminal helical region CF60_RS08825 PF00575 S1 RNA binding domain CF60_RS08825 PF12111 Polyribonucleotide phosphorylase C terminal CF60_RS08825 PF10150 Ribonuclease E/G family CF60_RS08835 PF01479 S4 domain CF60_RS08835 PF00849 RNA pseudouridylate synthase CF60_RS08840 PF02545 Maf-like protein CF60_RS08845 PF02620 Large ribosomal RNA subunit accumulation protein YceD CF60_RS08850 PF01783 Ribosomal L32p protein family CF60_RS08855 PF02504 Fatty acid synthesis protein CF60_RS08860 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CF60_RS08860 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CF60_RS08865 PF00698 Acyl transferase domain CF60_RS08875 PF00550 Phosphopantetheine attachment site CF60_RS08880 PF02801 Beta-ketoacyl synthase, C-terminal domain CF60_RS08880 PF00109 Beta-ketoacyl synthase, N-terminal domain CF60_RS08885 PF01063 Amino-transferase class IV CF60_RS08890 PF02618 YceG-like family CF60_RS08895 PF02223 Thymidylate kinase CF60_RS08900 PF09115 DNA polymerase III, delta subunit, C terminal CF60_RS08905 PF01026 TatD related DNase CF60_RS08910 PF02378 Phosphotransferase system, EIIC CF60_RS08910 PF00367 phosphotransferase system, EIIB CF60_RS08915 PF00593 TonB dependent receptor CF60_RS08915 PF07715 TonB-dependent Receptor Plug Domain CF60_RS08920 PF01230 HIT domain CF60_RS08925 PF07233 Protein of unknown function (DUF1425) CF60_RS08930 PF13036 Peptidoglycan-synthase activator LpoB CF60_RS08935 PF01636 Phosphotransferase enzyme family CF60_RS08940 PF00933 Glycosyl hydrolase family 3 N terminal domain CF60_RS08945 PF05728 Uncharacterised protein family (UPF0227) CF60_RS08950 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS08955 PF05433 Glycine zipper 2TM domain CF60_RS08960 PF00440 Bacterial regulatory proteins, tetR family CF60_RS08965 PF07338 Protein of unknown function (DUF1471) CF60_RS08970 PF17969 L,D-transpeptidase C-terminal domain CF60_RS08970 PF01476 LysM domain CF60_RS08970 PF03734 L,D-transpeptidase catalytic domain CF60_RS08980 PF01757 Acyltransferase family CF60_RS08985 PF02687 FtsX-like permease family CF60_RS08985 PF12704 MacB-like periplasmic core domain CF60_RS08990 PF00005 ABC transporter CF60_RS08995 PF12704 MacB-like periplasmic core domain CF60_RS08995 PF02687 FtsX-like permease family CF60_RS09000 PF00480 ROK family CF60_RS09010 PF04536 TPM domain CF60_RS09015 PF12158 Protein of unknown function (DUF3592) CF60_RS09020 PF13416 Bacterial extracellular solute-binding protein CF60_RS09025 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS09030 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS09035 PF08402 TOBE domain CF60_RS09035 PF00005 ABC transporter CF60_RS09045 PF07687 Peptidase dimerisation domain CF60_RS09045 PF01546 Peptidase family M20/M25/M40 CF60_RS09050 PF08007 Cupin superfamily protein CF60_RS09055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS09055 PF08918 PhoQ Sensor CF60_RS09060 PF00072 Response regulator receiver domain CF60_RS09060 PF00486 Transcriptional regulatory protein, C terminal CF60_RS09065 PF08328 Adenylosuccinate lyase C-terminal CF60_RS09065 PF00206 Lyase CF60_RS09070 PF04356 Protein of unknown function (DUF489) CF60_RS09080 PF00293 NUDIX domain CF60_RS09085 PF00849 RNA pseudouridylate synthase CF60_RS09090 PF00180 Isocitrate/isopropylmalate dehydrogenase CF60_RS09105 PF07166 Protein of unknown function (DUF1398) CF60_RS09110 PF13411 MerR HTH family regulatory protein CF60_RS09115 PF00563 EAL domain CF60_RS09115 PF04940 Sensors of blue-light using FAD CF60_RS09125 PF12792 CSS motif domain associated with EAL CF60_RS09125 PF00563 EAL domain CF60_RS09140 PF03797 Autotransporter beta-domain CF60_RS09145 PF16456 YmgD protein CF60_RS09150 PF13436 Glycine-zipper domain CF60_RS09160 PF16168 Adhesin of bacterial autotransporter system, probable stalk CF60_RS09160 PF03797 Autotransporter beta-domain CF60_RS09160 PF03212 Pertactin CF60_RS09165 PF03776 Septum formation topological specificity factor MinE CF60_RS09170 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CF60_RS09175 PF05209 Septum formation inhibitor MinC, N-terminal domain CF60_RS09175 PF03775 Septum formation inhibitor MinC, C-terminal domain CF60_RS09180 PF05666 Fels-1 Prophage Protein-like CF60_RS09185 PF04151 Bacterial pre-peptidase C-terminal domain CF60_RS09195 PF05166 YcgL domain CF60_RS09200 PF01557 Fumarylacetoacetate (FAA) hydrolase family CF60_RS09205 PF03692 Putative zinc- or iron-chelating domain CF60_RS09210 PF06109 Haemolysin E (HlyE) CF60_RS09215 PF00717 Peptidase S24-like CF60_RS09220 PF00817 impB/mucB/samB family CF60_RS09220 PF11798 IMS family HHH motif CF60_RS09220 PF11799 impB/mucB/samB family C-terminal domain CF60_RS09220 PF13438 Domain of unknown function (DUF4113) CF60_RS09225 PF02600 Disulfide bond formation protein DsbB CF60_RS09230 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CF60_RS09235 PF07840 FadR C-terminal domain CF60_RS09235 PF00392 Bacterial regulatory proteins, gntR family CF60_RS09240 PF01797 Transposase IS200 like CF60_RS09245 PF04293 SpoVR like protein CF60_RS09250 PF01266 FAD dependent oxidoreductase CF60_RS09255 PF01168 Alanine racemase, N-terminal domain CF60_RS09255 PF00842 Alanine racemase, C-terminal domain CF60_RS09265 PF02080 TrkA-C domain CF60_RS09265 PF00999 Sodium/hydrogen exchanger family CF60_RS09265 PF03471 Transporter associated domain CF60_RS09270 PF17676 LD-carboxypeptidase C-terminal domain CF60_RS09270 PF02016 LD-carboxypeptidase N-terminal domain CF60_RS09275 PF01464 Transglycosylase SLT domain CF60_RS09280 PF07238 PilZ domain CF60_RS09280 PF07317 Flagellar regulator YcgR CF60_RS09285 PF04226 Transglycosylase associated protein CF60_RS09295 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CF60_RS09295 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CF60_RS09300 PF13649 Methyltransferase domain CF60_RS09305 PF00005 ABC transporter CF60_RS09310 PF01032 FecCD transport family CF60_RS09315 PF01497 Periplasmic binding protein CF60_RS09320 PF01204 Trehalase CF60_RS09325 PF00381 PTS HPr component phosphorylation site CF60_RS09325 PF03610 PTS system fructose IIA component CF60_RS09325 PF05524 PEP-utilising enzyme, N-terminal CF60_RS09325 PF00391 PEP-utilising enzyme, mobile domain CF60_RS09330 PF02734 DAK2 domain CF60_RS09335 PF02733 Dak1 domain CF60_RS09340 PF00989 PAS fold CF60_RS09340 PF00158 Sigma-54 interaction domain CF60_RS09340 PF02954 Bacterial regulatory protein, Fis family CF60_RS09345 PF03212 Pertactin CF60_RS09345 PF03797 Autotransporter beta-domain CF60_RS09355 PF06071 Protein of unknown function (DUF933) CF60_RS09355 PF01926 50S ribosome-binding GTPase CF60_RS09360 PF14572 Phosphoribosyl synthetase-associated domain CF60_RS09360 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CF60_RS09365 PF08544 GHMP kinases C terminal CF60_RS09365 PF00288 GHMP kinases N terminal domain CF60_RS09370 PF03550 Outer membrane lipoprotein LolB CF60_RS09375 PF01488 Shikimate / quinate 5-dehydrogenase CF60_RS09375 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CF60_RS09375 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CF60_RS09380 PF03462 PCRF domain CF60_RS09380 PF00472 RF-1 domain CF60_RS09385 PF13847 Methyltransferase domain CF60_RS09385 PF17827 PrmC N-terminal domain CF60_RS09390 PF04247 Invasion gene expression up-regulator, SirB CF60_RS09395 PF13369 Transglutaminase-like superfamily CF60_RS09400 PF00793 DAHP synthetase I family CF60_RS09405 PF13940 Toxin Ldr, type I toxin-antitoxin system CF60_RS09410 PF13940 Toxin Ldr, type I toxin-antitoxin system CF60_RS09415 PF01699 Sodium/calcium exchanger protein CF60_RS09420 PF06150 ChaB CF60_RS09425 PF04752 ChaC-like protein CF60_RS09430 PF02635 DsrE/DsrF-like family CF60_RS09435 PF11924 Inverse autotransporter, beta-domain CF60_RS09440 PF00072 Response regulator receiver domain CF60_RS09440 PF00196 Bacterial regulatory proteins, luxR family CF60_RS09445 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CF60_RS09445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS09445 PF07730 Histidine kinase CF60_RS09445 PF00672 HAMP domain CF60_RS09455 PF07690 Major Facilitator Superfamily CF60_RS09460 PF14710 Respiratory nitrate reductase alpha N-terminal CF60_RS09460 PF00384 Molybdopterin oxidoreductase CF60_RS09460 PF01568 Molydopterin dinucleotide binding domain CF60_RS09465 PF13247 4Fe-4S dicluster domain CF60_RS09465 PF14711 Respiratory nitrate reductase beta C-terminal CF60_RS09470 PF02613 Nitrate reductase delta subunit CF60_RS09475 PF02665 Nitrate reductase gamma subunit CF60_RS09490 PF01842 ACT domain CF60_RS09490 PF00551 Formyl transferase CF60_RS09495 PF02810 SEC-C motif CF60_RS09500 PF01734 Patatin-like phospholipase CF60_RS09505 PF00072 Response regulator receiver domain CF60_RS09510 PF00483 Nucleotidyl transferase CF60_RS09515 PF00816 H-NS histone family CF60_RS09520 PF00265 Thymidine kinase CF60_RS09525 PF00465 Iron-containing alcohol dehydrogenase CF60_RS09525 PF00171 Aldehyde dehydrogenase family CF60_RS09530 PF01914 MarC family integral membrane protein CF60_RS09535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF60_RS09545 PF00005 ABC transporter CF60_RS09545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CF60_RS09550 PF00005 ABC transporter CF60_RS09550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CF60_RS09555 PF01797 Transposase IS200 like CF60_RS09560 PF04269 Protein of unknown function, DUF440 CF60_RS09565 PF13396 Phospholipase_D-nuclease N-terminal CF60_RS09565 PF13091 PLD-like domain CF60_RS09575 PF07885 Ion channel CF60_RS09575 PF02254 TrkA-N domain CF60_RS09580 PF03795 YCII-related domain CF60_RS09585 PF03544 Gram-negative bacterial TonB protein C-terminal CF60_RS09590 PF03061 Thioesterase superfamily CF60_RS09595 PF04279 Intracellular septation protein A CF60_RS09605 PF03922 OmpW family CF60_RS09610 PF05974 Domain of unknown function (DUF892) CF60_RS09620 PF10685 Stress-induced bacterial acidophilic repeat motif CF60_RS09625 PF00290 Tryptophan synthase alpha chain CF60_RS09630 PF00291 Pyridoxal-phosphate dependent enzyme CF60_RS09635 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CF60_RS09635 PF00218 Indole-3-glycerol phosphate synthase CF60_RS09640 PF02885 Glycosyl transferase family, helical bundle domain CF60_RS09640 PF00591 Glycosyl transferase family, a/b domain CF60_RS09640 PF00117 Glutamine amidotransferase class-I CF60_RS09645 PF04715 Anthranilate synthase component I, N terminal region CF60_RS09645 PF00425 chorismate binding enzyme CF60_RS09650 PF02811 PHP domain CF60_RS09655 PF01300 Telomere recombination CF60_RS09665 PF01479 S4 domain CF60_RS09665 PF00849 RNA pseudouridylate synthase CF60_RS09680 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CF60_RS09680 PF12557 Cob(I)alamin adenosyltransferase N terminal CF60_RS09685 PF00106 short chain dehydrogenase CF60_RS09695 PF01343 Peptidase family S49 CF60_RS09695 PF08496 Peptidase family S49 N-terminal CF60_RS09700 PF10692 Protein of unknown function (DUF2498) CF60_RS09710 PF01131 DNA topoisomerase CF60_RS09710 PF01751 Toprim domain CF60_RS09710 PF01396 Topoisomerase DNA binding C4 zinc finger CF60_RS09710 PF08272 Topoisomerase I zinc-ribbon-like CF60_RS09715 PF03466 LysR substrate binding domain CF60_RS09715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS09740 PF00330 Aconitase family (aconitate hydratase) CF60_RS09740 PF00694 Aconitase C-terminal domain CF60_RS09745 PF00925 GTP cyclohydrolase II CF60_RS09750 PF01569 PAP2 superfamily CF60_RS09755 PF06305 Lipopolysaccharide assembly protein A domain CF60_RS09760 PF18073 Rubredoxin metal binding domain CF60_RS09765 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CF60_RS09770 PF01253 Translation initiation factor SUI1 CF60_RS09775 PF05433 Glycine zipper 2TM domain CF60_RS09780 PF00455 DeoR C terminal sensor domain CF60_RS09780 PF08220 DeoR-like helix-turn-helix domain CF60_RS09790 PF13426 PAS domain CF60_RS09790 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS09790 PF00563 EAL domain CF60_RS09800 PF08206 Ribonuclease B OB domain CF60_RS09800 PF17876 Cold shock domain CF60_RS09800 PF00575 S1 RNA binding domain CF60_RS09800 PF00773 RNB domain CF60_RS09815 PF00440 Bacterial regulatory proteins, tetR family CF60_RS09815 PF16295 Tetracyclin repressor-like, C-terminal domain CF60_RS09820 PF00529 HlyD membrane-fusion protein of T1SS CF60_RS09820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CF60_RS09825 PF00873 AcrB/AcrD/AcrF family CF60_RS09830 PF02321 Outer membrane efflux protein CF60_RS09835 PF07690 Major Facilitator Superfamily CF60_RS09840 PF00005 ABC transporter CF60_RS09845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CF60_RS09845 PF00005 ABC transporter CF60_RS09850 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS09850 PF12911 N-terminal TM domain of oligopeptide transport permease C CF60_RS09855 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS09860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF60_RS09865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF60_RS09875 PF10820 Protein of unknown function (DUF2543) CF60_RS09885 PF10820 Protein of unknown function (DUF2543) CF60_RS09890 PF00324 Amino acid permease CF60_RS09895 PF00120 Glutamine synthetase, catalytic domain CF60_RS09900 PF07722 Peptidase C26 CF60_RS09905 PF07883 Cupin domain CF60_RS09905 PF01381 Helix-turn-helix CF60_RS09910 PF00171 Aldehyde dehydrogenase family CF60_RS09920 PF00202 Aminotransferase class-III CF60_RS09925 PF00158 Sigma-54 interaction domain CF60_RS09925 PF02954 Bacterial regulatory protein, Fis family CF60_RS09930 PF04012 PspA/IM30 family CF60_RS09935 PF06667 Phage shock protein B CF60_RS09940 PF04024 PspC domain CF60_RS09945 PF09584 Phage shock protein PspD (Phageshock_PspD) CF60_RS09950 PF00581 Rhodanese-like domain CF60_RS09955 PF04317 YcjX-like family, DUF463 CF60_RS09960 PF05128 Domain of unknown function (DUF697) CF60_RS09965 PF18024 Helix-turn-helix domain CF60_RS09965 PF00158 Sigma-54 interaction domain CF60_RS09965 PF13188 PAS domain CF60_RS09970 PF08534 Redoxin CF60_RS09975 PF13378 Enolase C-terminal domain-like CF60_RS09975 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CF60_RS09980 PF00246 Zinc carboxypeptidase CF60_RS09990 PF12146 Serine aminopeptidase, S33 CF60_RS09995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS09995 PF03466 LysR substrate binding domain CF60_RS10005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF60_RS10010 PF00924 Mechanosensitive ion channel CF60_RS10015 PF10749 Protein of unknown function (DUF2534) CF60_RS10020 PF00582 Universal stress protein family CF60_RS10025 PF00325 Bacterial regulatory proteins, crp family CF60_RS10025 PF00027 Cyclic nucleotide-binding domain CF60_RS10030 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CF60_RS10030 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CF60_RS10035 PF03806 AbgT putative transporter family CF60_RS10045 PF01546 Peptidase family M20/M25/M40 CF60_RS10050 PF01546 Peptidase family M20/M25/M40 CF60_RS10050 PF07687 Peptidase dimerisation domain CF60_RS10055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS10055 PF03466 LysR substrate binding domain CF60_RS10070 PF13533 Biotin-lipoyl like CF60_RS10075 PF07690 Major Facilitator Superfamily CF60_RS10080 PF01713 Smr domain CF60_RS10085 PF08448 PAS fold CF60_RS10085 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS10100 PF00271 Helicase conserved C-terminal domain CF60_RS10100 PF03880 DbpA RNA binding domain CF60_RS10100 PF00270 DEAD/DEAH box helicase CF60_RS10105 PF01171 PP-loop family CF60_RS10110 PF00589 Phage integrase family CF60_RS10110 PF12167 Arm DNA-binding domain CF60_RS10115 PF06806 Putative excisionase (DUF1233) CF60_RS10120 PF06688 Protein of unknown function (DUF1187) CF60_RS10135 PF12684 PDDEXK-like domain of unknown function (DUF3799) CF60_RS10135 PF06630 Enterobacterial exodeoxyribonuclease VIII CF60_RS10145 PF04181 Rtr1/RPAP2 family CF60_RS10155 PF14163 Super-infection exclusion protein B CF60_RS10165 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT CF60_RS10170 PF06254 Putative bacterial toxin ydaT CF60_RS10175 PF07120 Protein of unknown function (DUF1376) CF60_RS10180 PF01695 IstB-like ATP binding protein CF60_RS10185 PF07789 Protein of unknown function (DUF1627) CF60_RS10205 PF00145 C-5 cytosine-specific DNA methylase CF60_RS10225 PF07102 Protein of unknown function (DUF1364) CF60_RS10235 PF06519 TolA C-terminal CF60_RS10245 PF04971 Bacteriophage P21 holin S CF60_RS10250 PF00959 Phage lysozyme CF60_RS10255 PF03245 Bacteriophage Rz lysis protein CF60_RS10260 PF02386 Cation transport protein CF60_RS10265 PF02195 ParB-like nuclease domain CF60_RS10410 PF00436 Single-strand binding protein family CF60_RS10430 PF01385 Probable transposase CF60_RS10430 PF12323 Helix-turn-helix domain CF60_RS10430 PF07282 Putative transposase DNA-binding domain CF60_RS10440 PF12706 Beta-lactamase superfamily domain CF60_RS10445 PF02311 AraC-like ligand binding domain CF60_RS10445 PF12833 Helix-turn-helix domain CF60_RS10470 PF01420 Type I restriction modification DNA specificity domain CF60_RS10475 PF18766 SWI2/SNF2 ATPase CF60_RS10475 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CF60_RS10475 PF12008 Type I restriction and modification enzyme - subunit R C terminal CF60_RS10510 PF02086 D12 class N6 adenine-specific DNA methyltransferase CF60_RS10515 PF04381 Putative exonuclease, RdgC CF60_RS10560 PF18607 ParA helix turn helix domain CF60_RS10560 PF13614 AAA domain CF60_RS10565 PF08775 ParB family CF60_RS10565 PF02195 ParB-like nuclease domain CF60_RS10615 PF06316 Enterobacterial Ail/Lom protein CF60_RS10620 PF07484 Phage Tail Collar Domain CF60_RS10620 PF03335 Phage tail fibre repeat CF60_RS10620 PF08400 Prophage tail fibre N-terminal CF60_RS10640 PF02796 Helix-turn-helix domain of resolvase CF60_RS10640 PF00239 Resolvase, N terminal domain CF60_RS10650 PF00582 Universal stress protein family CF60_RS10655 PF00267 Gram-negative porin CF60_RS10660 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CF60_RS10660 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CF60_RS10660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CF60_RS10660 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CF60_RS10660 PF10371 Domain of unknown function CF60_RS10665 PF03891 Domain of unknown function (DUF333) CF60_RS10670 PF03724 META domain CF60_RS10675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CF60_RS10675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CF60_RS10680 PF11739 Dicarboxylate transport CF60_RS10685 PF13617 YnbE-like lipoprotein CF60_RS10690 PF07027 Protein of unknown function (DUF1318) CF60_RS10695 PF12833 Helix-turn-helix domain CF60_RS10695 PF14525 AraC-binding-like domain CF60_RS10700 PF00171 Aldehyde dehydrogenase family CF60_RS10705 PF07833 Copper amine oxidase N-terminal domain CF60_RS10705 PF02727 Copper amine oxidase, N2 domain CF60_RS10705 PF01179 Copper amine oxidase, enzyme domain CF60_RS10705 PF02728 Copper amine oxidase, N3 domain CF60_RS10710 PF01575 MaoC like domain CF60_RS10710 PF00171 Aldehyde dehydrogenase family CF60_RS10715 PF05138 Phenylacetic acid catabolic protein CF60_RS10720 PF06243 Phenylacetic acid degradation B CF60_RS10725 PF05138 Phenylacetic acid catabolic protein CF60_RS10730 PF01883 Iron-sulfur cluster assembly protein CF60_RS10735 PF00175 Oxidoreductase NAD-binding domain CF60_RS10735 PF00970 Oxidoreductase FAD-binding domain CF60_RS10735 PF00111 2Fe-2S iron-sulfur cluster binding domain CF60_RS10740 PF00378 Enoyl-CoA hydratase/isomerase CF60_RS10745 PF00378 Enoyl-CoA hydratase/isomerase CF60_RS10750 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CF60_RS10750 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CF60_RS10750 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CF60_RS10755 PF03061 Thioesterase superfamily CF60_RS10760 PF02803 Thiolase, C-terminal domain CF60_RS10760 PF00108 Thiolase, N-terminal domain CF60_RS10765 PF00501 AMP-binding enzyme CF60_RS10765 PF14535 AMP-binding enzyme C-terminal domain CF60_RS10770 PF07848 PaaX-like protein CF60_RS10770 PF08223 PaaX-like protein C-terminal domain CF60_RS10775 PF00132 Bacterial transferase hexapeptide (six repeats) CF60_RS10785 PF00248 Aldo/keto reductase family CF60_RS10790 PF02525 Flavodoxin-like fold CF60_RS10795 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CF60_RS10795 PF00271 Helicase conserved C-terminal domain CF60_RS10795 PF04408 Helicase associated domain (HA2) CF60_RS10795 PF00270 DEAD/DEAH box helicase CF60_RS10795 PF11898 Domain of unknown function (DUF3418) CF60_RS10800 PF02698 DUF218 domain CF60_RS10805 PF00171 Aldehyde dehydrogenase family CF60_RS10810 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CF60_RS10810 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CF60_RS10815 PF01292 Prokaryotic cytochrome b561 CF60_RS10825 PF01848 Hok/gef family CF60_RS10830 PF13333 Integrase core domain CF60_RS10830 PF00665 Integrase core domain CF60_RS10830 PF13276 HTH-like domain CF60_RS10840 PF00672 HAMP domain CF60_RS10840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CF60_RS10840 PF02203 Tar ligand binding domain homologue CF60_RS10845 PF03466 LysR substrate binding domain CF60_RS10845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS10850 PF07063 Domain of unknown function (DUF1338) CF60_RS10855 PF04349 Periplasmic glucan biosynthesis protein, MdoG CF60_RS10865 PF04325 Protein of unknown function (DUF465) CF60_RS10870 PF13302 Acetyltransferase (GNAT) domain CF60_RS10875 PF18836 Beta solenoid repeat from YDCK CF60_RS10880 PF03595 Voltage-dependent anion channel CF60_RS10885 PF03848 Tellurite resistance protein TehB CF60_RS10890 PF11769 Protein of unknown function (DUF3313) CF60_RS10895 PF03594 Benzoate membrane transport protein CF60_RS10900 PF01381 Helix-turn-helix CF60_RS10900 PF07883 Cupin domain CF60_RS10905 PF12392 Collagenase CF60_RS10905 PF01136 Peptidase family U32 CF60_RS10910 PF10829 Protein of unknown function (DUF2554) CF60_RS10915 PF07927 HicA toxin of bacterial toxin-antitoxin, CF60_RS10920 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system CF60_RS10920 PF01381 Helix-turn-helix CF60_RS10925 PF00155 Aminotransferase class I and II CF60_RS10925 PF00392 Bacterial regulatory proteins, gntR family CF60_RS10930 PF13416 Bacterial extracellular solute-binding protein CF60_RS10935 PF00005 ABC transporter CF60_RS10935 PF08402 TOBE domain CF60_RS10940 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS10945 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS10950 PF00171 Aldehyde dehydrogenase family CF60_RS10960 PF10753 Toxin GhoT_OrtT CF60_RS10965 PF10735 Protein of unknown function (DUF2526) CF60_RS10970 PF04657 Putative inner membrane exporter, YdcZ CF60_RS10975 PF00583 Acetyltransferase (GNAT) family CF60_RS10980 PF16884 N-terminal domain of oxidoreductase CF60_RS10980 PF00107 Zinc-binding dehydrogenase CF60_RS10985 PF00392 Bacterial regulatory proteins, gntR family CF60_RS10985 PF07729 FCD domain CF60_RS10990 PF00593 TonB dependent receptor CF60_RS10990 PF07715 TonB-dependent Receptor Plug Domain CF60_RS11000 PF00324 Amino acid permease CF60_RS11035 PF13808 DDE_Tnp_1-associated CF60_RS11035 PF01609 Transposase DDE domain CF60_RS11040 PF00563 EAL domain CF60_RS11040 PF00360 Phytochrome region CF60_RS11040 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS11040 PF01590 GAF domain CF60_RS11045 PF00753 Metallo-beta-lactamase superfamily CF60_RS11045 PF14864 Alkyl sulfatase C-terminal CF60_RS11045 PF14863 Alkyl sulfatase dimerisation CF60_RS11050 PF01361 Tautomerase enzyme CF60_RS11055 PF01613 Flavin reductase like domain CF60_RS11060 PF00797 N-acetyltransferase CF60_RS11065 PF02567 Phenazine biosynthesis-like protein CF60_RS11070 PF02665 Nitrate reductase gamma subunit CF60_RS11075 PF02613 Nitrate reductase delta subunit CF60_RS11080 PF14711 Respiratory nitrate reductase beta C-terminal CF60_RS11080 PF13247 4Fe-4S dicluster domain CF60_RS11085 PF14710 Respiratory nitrate reductase alpha N-terminal CF60_RS11085 PF01568 Molydopterin dinucleotide binding domain CF60_RS11085 PF00384 Molybdopterin oxidoreductase CF60_RS11090 PF07690 Major Facilitator Superfamily CF60_RS11105 PF00267 Gram-negative porin CF60_RS11110 PF00892 EamA-like transporter family CF60_RS11115 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS11115 PF01568 Molydopterin dinucleotide binding domain CF60_RS11115 PF00384 Molybdopterin oxidoreductase CF60_RS11120 PF01568 Molydopterin dinucleotide binding domain CF60_RS11120 PF00384 Molybdopterin oxidoreductase CF60_RS11120 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS11125 PF12800 4Fe-4S binding domain CF60_RS11125 PF13247 4Fe-4S dicluster domain CF60_RS11125 PF09163 Formate dehydrogenase N, transmembrane CF60_RS11130 PF01292 Prokaryotic cytochrome b561 CF60_RS11140 PF01797 Transposase IS200 like CF60_RS11145 PF01381 Helix-turn-helix CF60_RS11150 PF08240 Alcohol dehydrogenase GroES-like domain CF60_RS11150 PF00107 Zinc-binding dehydrogenase CF60_RS11155 PF03949 Malic enzyme, NAD binding domain CF60_RS11155 PF00390 Malic enzyme, N-terminal domain CF60_RS11160 PF08136 30S ribosomal protein subunit S22 family CF60_RS11165 PF10684 Putative biofilm-dependent modulation protein CF60_RS11170 PF02566 OsmC-like protein CF60_RS11175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CF60_RS11175 PF00005 ABC transporter CF60_RS11180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CF60_RS11180 PF00005 ABC transporter CF60_RS11185 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS11185 PF12911 N-terminal TM domain of oligopeptide transport permease C CF60_RS11190 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS11195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF60_RS11200 PF01427 D-ala-D-ala dipeptidase CF60_RS11205 PF00563 EAL domain CF60_RS11205 PF13426 PAS domain CF60_RS11205 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS11210 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS11215 PF02638 Glycosyl hydrolase-like 10 CF60_RS11220 PF13520 Amino acid permease CF60_RS11225 PF00282 Pyridoxal-dependent decarboxylase conserved domain CF60_RS11235 PF05193 Peptidase M16 inactive domain CF60_RS11235 PF00675 Insulinase (Peptidase family M16) CF60_RS11240 PF07715 TonB-dependent Receptor Plug Domain CF60_RS11245 PF06472 ABC transporter transmembrane region 2 CF60_RS11245 PF00005 ABC transporter CF60_RS11250 PF04055 Radical SAM superfamily CF60_RS11250 PF13186 Iron-sulfur cluster-binding domain CF60_RS11255 PF00884 Sulfatase CF60_RS11260 PF12833 Helix-turn-helix domain CF60_RS11265 PF17073 Two-component-system connector protein CF60_RS11270 PF00384 Molybdopterin oxidoreductase CF60_RS11275 PF09160 FimH, mannose binding CF60_RS11280 PF00419 Fimbrial protein CF60_RS11285 PF00419 Fimbrial protein CF60_RS11290 PF13953 PapC C-terminal domain CF60_RS11290 PF00577 Outer membrane usher protein CF60_RS11290 PF13954 PapC N-terminal domain CF60_RS11295 PF02753 Pili assembly chaperone PapD, C-terminal domain CF60_RS11295 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CF60_RS11300 PF00419 Fimbrial protein CF60_RS11320 PF00248 Aldo/keto reductase family CF60_RS11340 PF13657 HipA N-terminal domain CF60_RS11340 PF07804 HipA-like C-terminal domain CF60_RS11345 PF01381 Helix-turn-helix CF60_RS11350 PF03797 Autotransporter beta-domain CF60_RS11360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CF60_RS11360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CF60_RS11365 PF04198 Putative sugar-binding domain CF60_RS11385 PF13407 Periplasmic binding protein domain CF60_RS11390 PF01791 DeoC/LacD family aldolase CF60_RS11395 PF03992 Antibiotic biosynthesis monooxygenase CF60_RS11400 PF13649 Methyltransferase domain CF60_RS11405 PF01062 Bestrophin, RFP-TM, chloride channel CF60_RS11415 PF01232 Mannitol dehydrogenase Rossmann domain CF60_RS11415 PF08125 Mannitol dehydrogenase C-terminal domain CF60_RS11420 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS11425 PF13811 Domain of unknown function (DUF4186) CF60_RS11430 PF04960 Glutaminase CF60_RS11435 PF00171 Aldehyde dehydrogenase family CF60_RS11440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS11440 PF03466 LysR substrate binding domain CF60_RS11450 PF07690 Major Facilitator Superfamily CF60_RS11455 PF01914 MarC family integral membrane protein CF60_RS11460 PF01047 MarR family CF60_RS11465 PF12833 Helix-turn-helix domain CF60_RS11470 PF13999 MarB protein CF60_RS11475 PF00232 Glycosyl hydrolase family 1 CF60_RS11480 PF02264 LamB porin CF60_RS11480 PF11471 Maltoporin periplasmic N-terminal extension CF60_RS11485 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CF60_RS11490 PF02378 Phosphotransferase system, EIIC CF60_RS11495 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CF60_RS11500 PF07702 UTRA domain CF60_RS11500 PF00392 Bacterial regulatory proteins, gntR family CF60_RS11505 PF00892 EamA-like transporter family CF60_RS11510 PF07690 Major Facilitator Superfamily CF60_RS11520 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS11525 PF04076 Bacterial OB fold (BOF) protein CF60_RS11535 PF01432 Peptidase family M3 CF60_RS11540 PF00106 short chain dehydrogenase CF60_RS11545 PF07729 FCD domain CF60_RS11545 PF00392 Bacterial regulatory proteins, gntR family CF60_RS11550 PF14001 YdfZ protein CF60_RS11555 PF08125 Mannitol dehydrogenase C-terminal domain CF60_RS11555 PF01232 Mannitol dehydrogenase Rossmann domain CF60_RS11560 PF00083 Sugar (and other) transporter CF60_RS11560 PF07690 Major Facilitator Superfamily CF60_RS11565 PF08240 Alcohol dehydrogenase GroES-like domain CF60_RS11565 PF00107 Zinc-binding dehydrogenase CF60_RS11570 PF13378 Enolase C-terminal domain-like CF60_RS11570 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CF60_RS11575 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CF60_RS11580 PF06932 Protein of unknown function (DUF1283) CF60_RS11585 PF13302 Acetyltransferase (GNAT) domain CF60_RS11590 PF06788 Uncharacterised protein family (UPF0257) CF60_RS11595 PF06649 Protein of unknown function (DUF1161) CF60_RS11600 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS11600 PF01568 Molydopterin dinucleotide binding domain CF60_RS11600 PF00384 Molybdopterin oxidoreductase CF60_RS11605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS11605 PF00384 Molybdopterin oxidoreductase CF60_RS11605 PF01568 Molydopterin dinucleotide binding domain CF60_RS11610 PF12800 4Fe-4S binding domain CF60_RS11610 PF13247 4Fe-4S dicluster domain CF60_RS11615 PF04976 DMSO reductase anchor subunit (DmsC) CF60_RS11620 PF02613 Nitrate reductase delta subunit CF60_RS11625 PF00654 Voltage gated chloride channel CF60_RS11635 PF00480 ROK family CF60_RS11640 PF03466 LysR substrate binding domain CF60_RS11640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS11645 PF07690 Major Facilitator Superfamily CF60_RS11660 PF00089 Trypsin CF60_RS11665 PF00893 Small Multidrug Resistance protein CF60_RS11670 PF00893 Small Multidrug Resistance protein CF60_RS11675 PF01594 AI-2E family transporter CF60_RS11680 PF02233 NAD(P) transhydrogenase beta subunit CF60_RS11685 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CF60_RS11685 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CF60_RS11685 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CF60_RS11690 PF07338 Protein of unknown function (DUF1471) CF60_RS11695 PF13520 Amino acid permease CF60_RS11705 PF06942 GlpM protein CF60_RS11710 PF00072 Response regulator receiver domain CF60_RS11710 PF00486 Transcriptional regulatory protein, C terminal CF60_RS11715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS11715 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS11715 PF00672 HAMP domain CF60_RS11720 PF05472 DNA replication terminus site-binding protein (Ter protein) CF60_RS11725 PF00206 Lyase CF60_RS11725 PF10415 Fumarase C C-terminus CF60_RS11730 PF05681 Fumarate hydratase (Fumerase) CF60_RS11730 PF05683 Fumarase C-terminus CF60_RS11735 PF01238 Phosphomannose isomerase type I CF60_RS11740 PF06097 Bacterial protein of unknown function (DUF945) CF60_RS11745 PF03573 outer membrane porin, OprD family CF60_RS11755 PF00703 Glycosyl hydrolases family 2 CF60_RS11755 PF02837 Glycosyl hydrolases family 2, sugar binding domain CF60_RS11755 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CF60_RS11760 PF00440 Bacterial regulatory proteins, tetR family CF60_RS11770 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CF60_RS11770 PF00356 Bacterial regulatory proteins, lacI family CF60_RS11775 PF02378 Phosphotransferase system, EIIC CF60_RS11775 PF00367 phosphotransferase system, EIIB CF60_RS11780 PF00155 Aminotransferase class I and II CF60_RS11785 PF00962 Adenosine/AMP deaminase CF60_RS11790 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CF60_RS11790 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CF60_RS11800 PF05321 Haemolysin expression modulating protein CF60_RS11805 PF10754 Protein of unknown function (DUF2569) CF60_RS11810 PF02508 Rnf-Nqr subunit, membrane protein CF60_RS11815 PF04060 Putative Fe-S cluster CF60_RS11820 PF12838 4Fe-4S dicluster domain CF60_RS11820 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CF60_RS11820 PF10531 SLBB domain CF60_RS11820 PF13375 RnfC Barrel sandwich hybrid domain CF60_RS11825 PF13375 RnfC Barrel sandwich hybrid domain CF60_RS11825 PF13237 4Fe-4S dicluster domain CF60_RS11825 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CF60_RS11825 PF10531 SLBB domain CF60_RS11840 PF03116 NQR2, RnfD, RnfE family CF60_RS11845 PF04205 FMN-binding domain CF60_RS11850 PF02508 Rnf-Nqr subunit, membrane protein CF60_RS11855 PF00633 Helix-hairpin-helix motif CF60_RS11855 PF00730 HhH-GPD superfamily base excision DNA repair protein CF60_RS11855 PF10576 Iron-sulfur binding domain of endonuclease III CF60_RS11865 PF00854 POT family CF60_RS11885 PF00854 POT family CF60_RS11890 PF02798 Glutathione S-transferase, N-terminal domain CF60_RS11890 PF00043 Glutathione S-transferase, C-terminal domain CF60_RS11895 PF08543 Phosphomethylpyrimidine kinase CF60_RS11900 PF01479 S4 domain CF60_RS11900 PF00579 tRNA synthetases class I (W and Y) CF60_RS11905 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CF60_RS11905 PF01243 Pyridoxamine 5'-phosphate oxidase CF60_RS11910 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CF60_RS11915 PF03702 Anhydro-N-acetylmuramic acid kinase CF60_RS11920 PF05433 Glycine zipper 2TM domain CF60_RS11925 PF01047 MarR family CF60_RS11930 PF07869 Protein of unknown function (DUF1656) CF60_RS11935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CF60_RS11935 PF00529 HlyD membrane-fusion protein of T1SS CF60_RS11940 PF04632 Fusaric acid resistance protein family CF60_RS11945 PF00080 Copper/zinc superoxide dismutase (SODC) CF60_RS11950 PF00248 Aldo/keto reductase family CF60_RS11955 PF06945 Protein of unknown function (DUF1289) CF60_RS11960 PF00440 Bacterial regulatory proteins, tetR family CF60_RS11960 PF16925 Tetracyclin repressor-like, C-terminal domain CF60_RS11965 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CF60_RS11970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CF60_RS11975 PF00929 Exonuclease CF60_RS11980 PF00271 Helicase conserved C-terminal domain CF60_RS11980 PF08494 DEAD/H associated CF60_RS11980 PF00270 DEAD/DEAH box helicase CF60_RS11985 PF00462 Glutaredoxin CF60_RS11990 PF00877 NlpC/P60 family CF60_RS11995 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CF60_RS11995 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CF60_RS12000 PF07690 Major Facilitator Superfamily CF60_RS12010 PF00356 Bacterial regulatory proteins, lacI family CF60_RS12015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS12015 PF03466 LysR substrate binding domain CF60_RS12020 PF07690 Major Facilitator Superfamily CF60_RS12030 PF00677 Lumazine binding domain CF60_RS12035 PF01554 MatE CF60_RS12055 PF08803 Putative mono-oxygenase ydhR CF60_RS12060 PF13454 FAD-NAD(P)-binding CF60_RS12070 PF01292 Prokaryotic cytochrome b561 CF60_RS12075 PF13247 4Fe-4S dicluster domain CF60_RS12085 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain CF60_RS12085 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 CF60_RS12090 PF13247 4Fe-4S dicluster domain CF60_RS12090 PF12800 4Fe-4S binding domain CF60_RS12095 PF10965 Protein of unknown function (DUF2767) CF60_RS12100 PF00224 Pyruvate kinase, barrel domain CF60_RS12100 PF02887 Pyruvate kinase, alpha/beta domain CF60_RS12105 PF04728 Lipoprotein leucine-zipper CF60_RS12110 PF01476 LysM domain CF60_RS12110 PF17969 L,D-transpeptidase C-terminal domain CF60_RS12110 PF03734 L,D-transpeptidase catalytic domain CF60_RS12115 PF02657 Fe-S metabolism associated domain CF60_RS12120 PF00266 Aminotransferase class-V CF60_RS12125 PF01458 Uncharacterized protein family (UPF0051) CF60_RS12130 PF00005 ABC transporter CF60_RS12135 PF01458 Uncharacterized protein family (UPF0051) CF60_RS12140 PF01521 Iron-sulphur cluster biosynthesis CF60_RS12145 PF15930 Domain of unknown function CF60_RS12150 PF03061 Thioesterase superfamily CF60_RS12155 PF01565 FAD binding domain CF60_RS12155 PF02913 FAD linked oxidases, C-terminal domain CF60_RS12155 PF13183 4Fe-4S dicluster domain CF60_RS12160 PF01594 AI-2E family transporter CF60_RS12165 PF08965 Domain of unknown function (DUF1870) CF60_RS12170 PF07690 Major Facilitator Superfamily CF60_RS12175 PF07690 Major Facilitator Superfamily CF60_RS12180 PF08501 Shikimate dehydrogenase substrate binding domain CF60_RS12180 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CF60_RS12185 PF01487 Type I 3-dehydroquinase CF60_RS12190 PF01144 Coenzyme A transferase CF60_RS12195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CF60_RS12195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CF60_RS12195 PF02770 Acyl-CoA dehydrogenase, middle domain CF60_RS12200 PF12833 Helix-turn-helix domain CF60_RS12200 PF02311 AraC-like ligand binding domain CF60_RS12210 PF01012 Electron transfer flavoprotein domain CF60_RS12215 PF00766 Electron transfer flavoprotein FAD-binding domain CF60_RS12215 PF01012 Electron transfer flavoprotein domain CF60_RS12220 PF01494 FAD binding domain CF60_RS12230 PF00501 AMP-binding enzyme CF60_RS12230 PF13193 AMP-binding enzyme C-terminal domain CF60_RS12235 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CF60_RS12235 PF02896 PEP-utilising enzyme, TIM barrel domain CF60_RS12235 PF00391 PEP-utilising enzyme, mobile domain CF60_RS12245 PF03618 Kinase/pyrophosphorylase CF60_RS12250 PF00793 DAHP synthetase I family CF60_RS12255 PF10636 Hemin uptake protein hemP CF60_RS12260 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CF60_RS12265 PF00563 EAL domain CF60_RS12270 PF00877 NlpC/P60 family CF60_RS12275 PF00005 ABC transporter CF60_RS12280 PF00255 Glutathione peroxidase CF60_RS12285 PF01032 FecCD transport family CF60_RS12290 PF00216 Bacterial DNA-binding protein CF60_RS12295 PF03147 Ferredoxin-fold anticodon binding domain CF60_RS12295 PF03484 tRNA synthetase B5 domain CF60_RS12295 PF03483 B3/4 domain CF60_RS12295 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CF60_RS12295 PF01588 Putative tRNA binding domain CF60_RS12300 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CF60_RS12300 PF01409 tRNA synthetases class II core domain (F) CF60_RS12305 PF00453 Ribosomal protein L20 CF60_RS12310 PF01632 Ribosomal protein L35 CF60_RS12315 PF05198 Translation initiation factor IF-3, N-terminal domain CF60_RS12315 PF00707 Translation initiation factor IF-3, C-terminal domain CF60_RS12320 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CF60_RS12320 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CF60_RS12320 PF03129 Anticodon binding domain CF60_RS12320 PF02824 TGS domain CF60_RS12335 PF04338 Protein of unknown function, DUF481 CF60_RS12340 PF00294 pfkB family carbohydrate kinase CF60_RS12345 PF11080 Endoribonuclease GhoS CF60_RS12350 PF03881 Fructosamine kinase CF60_RS12355 PF14002 YniB-like protein CF60_RS12360 PF13419 Haloacid dehalogenase-like hydrolase CF60_RS12365 PF04307 LexA-binding, inner membrane-associated putative hydrolase CF60_RS12370 PF00375 Sodium:dicarboxylate symporter family CF60_RS12380 PF10729 Cell division activator CedA CF60_RS12385 PF00199 Catalase CF60_RS12385 PF06628 Catalase-related immune-responsive CF60_RS12385 PF18011 C-terminal domain found in long catalases CF60_RS12390 PF04794 YdjC-like protein CF60_RS12395 PF02056 Family 4 glycosyl hydrolase CF60_RS12395 PF11975 Family 4 glycosyl hydrolase C-terminal domain CF60_RS12400 PF12833 Helix-turn-helix domain CF60_RS12400 PF07883 Cupin domain CF60_RS12405 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CF60_RS12410 PF02378 Phosphotransferase system, EIIC CF60_RS12415 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CF60_RS12420 PF04355 SmpA / OmlA family CF60_RS12425 PF02540 NAD synthase CF60_RS12440 PF05962 HutD CF60_RS12445 PF07813 LTXXQ motif family protein CF60_RS12450 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CF60_RS12455 PF04996 Succinylarginine dihydrolase CF60_RS12465 PF04958 Arginine N-succinyltransferase beta subunit CF60_RS12470 PF00202 Aminotransferase class-III CF60_RS12475 PF03372 Endonuclease/Exonuclease/phosphatase family CF60_RS12480 PF09335 SNARE associated Golgi protein CF60_RS12490 PF09335 SNARE associated Golgi protein CF60_RS12495 PF02627 Carboxymuconolactone decarboxylase family CF60_RS12500 PF13416 Bacterial extracellular solute-binding protein CF60_RS12505 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS12510 PF00005 ABC transporter CF60_RS12515 PF00581 Rhodanese-like domain CF60_RS12520 PF01066 CDP-alcohol phosphatidyltransferase CF60_RS12525 PF00293 NUDIX domain CF60_RS12530 PF07383 Protein of unknown function (DUF1496) CF60_RS12535 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CF60_RS12535 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CF60_RS12540 PF06889 Protein of unknown function (DUF1266) CF60_RS12545 PF01131 DNA topoisomerase CF60_RS12545 PF01751 Toprim domain CF60_RS12550 PF00586 AIR synthase related protein, N-terminal domain CF60_RS12550 PF02769 AIR synthase related protein, C-terminal domain CF60_RS12560 PF00881 Nitroreductase family CF60_RS12570 PF01343 Peptidase family S49 CF60_RS12575 PF17763 Glutaminase/Asparaginase C-terminal domain CF60_RS12575 PF00710 Asparaginase, N-terminal CF60_RS12580 PF00857 Isochorismatase family CF60_RS12585 PF00083 Sugar (and other) transporter CF60_RS12590 PF08220 DeoR-like helix-turn-helix domain CF60_RS12590 PF00455 DeoR C terminal sensor domain CF60_RS12595 PF00248 Aldo/keto reductase family CF60_RS12600 PF00294 pfkB family carbohydrate kinase CF60_RS12605 PF01116 Fructose-bisphosphate aldolase class-II CF60_RS12610 PF00107 Zinc-binding dehydrogenase CF60_RS12610 PF08240 Alcohol dehydrogenase GroES-like domain CF60_RS12615 PF00083 Sugar (and other) transporter CF60_RS12620 PF08240 Alcohol dehydrogenase GroES-like domain CF60_RS12620 PF00107 Zinc-binding dehydrogenase CF60_RS12625 PF07023 Protein of unknown function (DUF1315) CF60_RS12630 PF01641 SelR domain CF60_RS12635 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CF60_RS12635 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CF60_RS12640 PF01263 Aldose 1-epimerase CF60_RS12645 PF00248 Aldo/keto reductase family CF60_RS12650 PF06629 MltA-interacting protein MipA CF60_RS12655 PF06798 PrkA serine protein kinase C-terminal domain CF60_RS12655 PF08298 PrkA AAA domain CF60_RS12660 PF04285 Protein of unknown function (DUF444) CF60_RS12665 PF17158 Membrane-associated sensor, integral membrane domain CF60_RS12665 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS12670 PF17155 Gammaproteobacterial periplasmic sensor domain CF60_RS12670 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS12675 PF04073 Aminoacyl-tRNA editing domain CF60_RS12685 PF04284 Protein of unknown function (DUF441) CF60_RS12690 PF12833 Helix-turn-helix domain CF60_RS12690 PF02311 AraC-like ligand binding domain CF60_RS12695 PF07690 Major Facilitator Superfamily CF60_RS12700 PF04343 Protein of unknown function, DUF488 CF60_RS12705 PF03891 Domain of unknown function (DUF333) CF60_RS12710 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS12710 PF13185 GAF domain CF60_RS12720 PF04226 Transglycosylase associated protein CF60_RS12725 PF08956 Domain of unknown function (DUF1869) CF60_RS12730 PF09313 Domain of unknown function (DUF1971) CF60_RS12735 PF01810 LysE type translocator CF60_RS12745 PF00180 Isocitrate/isopropylmalate dehydrogenase CF60_RS12750 PF02028 BCCT, betaine/carnitine/choline family transporter CF60_RS12755 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CF60_RS12755 PF00355 Rieske [2Fe-2S] domain CF60_RS12760 PF00970 Oxidoreductase FAD-binding domain CF60_RS12760 PF00111 2Fe-2S iron-sulfur cluster binding domain CF60_RS12760 PF00175 Oxidoreductase NAD-binding domain CF60_RS12765 PF00570 HRDC domain CF60_RS12765 PF01612 3'-5' exonuclease CF60_RS12770 PF13193 AMP-binding enzyme C-terminal domain CF60_RS12770 PF00501 AMP-binding enzyme CF60_RS12775 PF03843 Outer membrane lipoprotein Slp family CF60_RS12780 PF00814 Glycoprotease family CF60_RS12785 PF13307 Helicase C-terminal domain CF60_RS12785 PF04851 Type III restriction enzyme, res subunit CF60_RS12790 PF01042 Endoribonuclease L-PSP CF60_RS12800 PF08986 Domain of unknown function (DUF1889) CF60_RS12805 PF03701 Uncharacterised protein family (UPF0181) CF60_RS12810 PF04715 Anthranilate synthase component I, N terminal region CF60_RS12810 PF00425 chorismate binding enzyme CF60_RS12815 PF00293 NUDIX domain CF60_RS12820 PF03313 Serine dehydratase alpha chain CF60_RS12820 PF03315 Serine dehydratase beta chain CF60_RS12825 PF12792 CSS motif domain associated with EAL CF60_RS12825 PF00563 EAL domain CF60_RS12830 PF03741 Integral membrane protein TerC family CF60_RS12830 PF03471 Transporter associated domain CF60_RS12840 PF03610 PTS system fructose IIA component CF60_RS12840 PF03830 PTS system sorbose subfamily IIB component CF60_RS12845 PF03609 PTS system sorbose-specific iic component CF60_RS12850 PF03613 PTS system mannose/fructose/sorbose family IID component CF60_RS12855 PF06173 Protein of unknown function (DUF986) CF60_RS12870 PF13847 Methyltransferase domain CF60_RS12875 PF00313 'Cold-shock' DNA-binding domain CF60_RS12880 PF10736 Protein of unknown function (DUF2627) CF60_RS12890 PF13974 YebO-like protein CF60_RS12895 PF13998 MgrB protein CF60_RS12900 PF13996 YobH-like protein CF60_RS12905 PF01614 Bacterial transcriptional regulator CF60_RS12905 PF09339 IclR helix-turn-helix domain CF60_RS12910 PF07690 Major Facilitator Superfamily CF60_RS12915 PF01435 Peptidase family M48 CF60_RS12920 PF03572 Peptidase family S41 CF60_RS12920 PF11818 C-terminal domain of tail specific protease (DUF3340) CF60_RS12920 PF00595 PDZ domain CF60_RS12920 PF17804 Tail specific protease N-terminal domain CF60_RS12925 PF04352 ProQ/FINO family CF60_RS12925 PF17516 ProQ C-terminal domain CF60_RS12930 PF13185 GAF domain CF60_RS12935 PF04403 Paraquat-inducible protein A CF60_RS12940 PF02470 MlaD protein CF60_RS12945 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CF60_RS12945 PF01189 16S rRNA methyltransferase RsmB/F CF60_RS12945 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CF60_RS12950 PF07351 Protein of unknown function (DUF1480) CF60_RS12955 PF07358 Protein of unknown function (DUF1482) CF60_RS12960 PF00149 Calcineurin-like phosphoesterase CF60_RS12970 PF10709 Protein of unknown function (DUF2511) CF60_RS12975 PF05425 Copper resistance protein D CF60_RS12980 PF04234 CopC domain CF60_RS12985 PF06440 DNA polymerase III, theta subunit CF60_RS12990 PF00795 Carbon-nitrogen hydrolase CF60_RS12995 PF00929 Exonuclease CF60_RS13000 PF00326 Prolyl oligopeptidase family CF60_RS13000 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CF60_RS13010 PF12323 Helix-turn-helix domain CF60_RS13015 PF04391 Protein of unknown function (DUF533) CF60_RS13025 PF13995 YebF-like protein CF60_RS13030 PF07130 YebG protein CF60_RS13035 PF02222 ATP-grasp domain CF60_RS13040 PF01081 KDPG and KHG aldolase CF60_RS13045 PF00920 Dehydratase family CF60_RS13050 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CF60_RS13050 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CF60_RS13060 PF01380 SIS domain CF60_RS13060 PF01418 Helix-turn-helix domain, rpiR family CF60_RS13065 PF02887 Pyruvate kinase, alpha/beta domain CF60_RS13065 PF00224 Pyruvate kinase, barrel domain CF60_RS13070 PF01797 Transposase IS200 like CF60_RS13075 PF03279 Bacterial lipid A biosynthesis acyltransferase CF60_RS13080 PF08525 Opacity-associated protein A N-terminal motif CF60_RS13080 PF01476 LysM domain CF60_RS13080 PF01551 Peptidase family M23 CF60_RS13085 PF01297 Zinc-uptake complex component A periplasmic CF60_RS13090 PF00005 ABC transporter CF60_RS13095 PF00950 ABC 3 transport family CF60_RS13100 PF17864 RuvB AAA lid domain CF60_RS13100 PF05491 RuvB C-terminal winged helix domain CF60_RS13100 PF05496 Holliday junction DNA helicase RuvB P-loop domain CF60_RS13105 PF07499 RuvA, C-terminal domain CF60_RS13105 PF01330 RuvA N terminal domain CF60_RS13110 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CF60_RS13115 PF02075 Crossover junction endodeoxyribonuclease RuvC CF60_RS13120 PF01709 Transcriptional regulator CF60_RS13125 PF00293 NUDIX domain CF60_RS13130 PF00152 tRNA synthetases class II (D, K and N) CF60_RS13130 PF02938 GAD domain CF60_RS13130 PF01336 OB-fold nucleic acid binding domain CF60_RS13135 PF00857 Isochorismatase family CF60_RS13140 PF01904 Protein of unknown function DUF72 CF60_RS13145 PF01124 MAPEG family CF60_RS13150 PF13649 Methyltransferase domain CF60_RS13155 PF08003 Protein of unknown function (DUF1698) CF60_RS13160 PF00384 Molybdopterin oxidoreductase CF60_RS13160 PF18364 Molybdopterin oxidoreductase N-terminal domain CF60_RS13160 PF01568 Molydopterin dinucleotide binding domain CF60_RS13165 PF03264 NapC/NirT cytochrome c family, N-terminal region CF60_RS13170 PF03932 CutC family CF60_RS13175 PF06185 YecM protein CF60_RS13180 PF05746 DALR anticodon binding domain CF60_RS13180 PF03485 Arginyl tRNA synthetase N terminal domain CF60_RS13180 PF00750 tRNA synthetases class I (R) CF60_RS13185 PF06366 Flagellar protein FlhE CF60_RS13190 PF00771 FHIPEP family CF60_RS13195 PF01312 FlhB HrpN YscU SpaS Family CF60_RS13200 PF04344 Chemotaxis phosphatase, CheZ CF60_RS13205 PF00072 Response regulator receiver domain CF60_RS13210 PF00072 Response regulator receiver domain CF60_RS13210 PF01339 CheB methylesterase CF60_RS13215 PF03705 CheR methyltransferase, all-alpha domain CF60_RS13215 PF01739 CheR methyltransferase, SAM binding domain CF60_RS13220 PF02203 Tar ligand binding domain homologue CF60_RS13220 PF00672 HAMP domain CF60_RS13220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CF60_RS13225 PF02203 Tar ligand binding domain homologue CF60_RS13225 PF00672 HAMP domain CF60_RS13225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CF60_RS13230 PF01584 CheW-like domain CF60_RS13240 PF13677 Membrane MotB of proton-channel complex MotA/MotB CF60_RS13240 PF00691 OmpA family CF60_RS13245 PF01618 MotA/TolQ/ExbB proton channel family CF60_RS13250 PF05280 Flagellar transcriptional activator (FlhC) CF60_RS13255 PF05247 Flagellar transcriptional activator (FlhD) CF60_RS13260 PF00582 Universal stress protein family CF60_RS13265 PF00982 Glycosyltransferase family 20 CF60_RS13270 PF02358 Trehalose-phosphatase CF60_RS13275 PF02653 Branched-chain amino acid transport system / permease component CF60_RS13280 PF00005 ABC transporter CF60_RS13285 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CF60_RS13290 PF00210 Ferritin-like domain CF60_RS13295 PF10964 Protein of unknown function (DUF2766) CF60_RS13305 PF13992 YecR-like lipoprotein CF60_RS13310 PF00210 Ferritin-like domain CF60_RS13315 PF10678 Protein of unknown function (DUF2492) CF60_RS13320 PF03222 Tryptophan/tyrosine permease family CF60_RS13345 PF01066 CDP-alcohol phosphatidyltransferase CF60_RS13350 PF01541 GIY-YIG catalytic domain CF60_RS13350 PF08459 UvrC Helix-hairpin-helix N-terminal CF60_RS13350 PF02151 UvrB/uvrC motif CF60_RS13355 PF00072 Response regulator receiver domain CF60_RS13355 PF00196 Bacterial regulatory proteins, luxR family CF60_RS13365 PF10769 Protein of unknown function (DUF2594) CF60_RS13370 PF03472 Autoinducer binding domain CF60_RS13370 PF00196 Bacterial regulatory proteins, luxR family CF60_RS13375 PF00005 ABC transporter CF60_RS13380 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS13385 PF00291 Pyridoxal-phosphate dependent enzyme CF60_RS13390 PF00497 Bacterial extracellular solute-binding proteins, family 3 CF60_RS13395 PF02899 Phage integrase, N-terminal SAM-like domain CF60_RS13400 PF04539 Sigma-70 region 3 CF60_RS13400 PF04542 Sigma-70 region 2 CF60_RS13400 PF04545 Sigma-70, region 4 CF60_RS13405 PF00700 Bacterial flagellin C-terminal helical region CF60_RS13405 PF00669 Bacterial flagellin N-terminal helical region CF60_RS13405 PF12445 Flagellin protein CF60_RS13410 PF07195 Flagellar hook-associated protein 2 C-terminus CF60_RS13410 PF02465 Flagellar hook-associated protein 2 N-terminus CF60_RS13415 PF02561 Flagellar protein FliS CF60_RS13420 PF05400 Flagellar protein FliT CF60_RS13425 PF02806 Alpha amylase, C-terminal all-beta domain CF60_RS13425 PF00128 Alpha amylase, catalytic domain CF60_RS13430 PF13987 YedD-like protein CF60_RS13435 PF04143 Sulphur transport CF60_RS13440 PF01206 Sulfurtransferase TusA CF60_RS13445 PF02586 SOS response associated peptidase (SRAP) CF60_RS13450 PF00583 Acetyltransferase (GNAT) family CF60_RS13460 PF17607 Family of unknown function (DUF5503) CF60_RS13470 PF02049 Flagellar hook-basal body complex protein FliE CF60_RS13475 PF08345 Flagellar M-ring protein C-terminal CF60_RS13475 PF01514 Secretory protein of YscJ/FliF family CF60_RS13480 PF14842 FliG N-terminal domain CF60_RS13480 PF01706 FliG C-terminal domain CF60_RS13480 PF14841 FliG middle domain CF60_RS13485 PF02108 Flagellar assembly protein FliH CF60_RS13490 PF18269 T3SS EscN ATPase C-terminal domain CF60_RS13490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CF60_RS13495 PF02050 Flagellar FliJ protein CF60_RS13500 PF02120 Flagellar hook-length control protein FliK CF60_RS13505 PF03748 Flagellar basal body-associated protein FliL CF60_RS13510 PF02154 Flagellar motor switch protein FliM CF60_RS13510 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CF60_RS13515 PF16973 Flagellar motor switch protein FliN N-terminal CF60_RS13515 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CF60_RS13520 PF04347 Flagellar biosynthesis protein, FliO CF60_RS13525 PF00813 FliP family CF60_RS13530 PF01313 Bacterial export proteins, family 3 CF60_RS13535 PF01311 Bacterial export proteins, family 1 CF60_RS13540 PF00196 Bacterial regulatory proteins, luxR family CF60_RS13545 PF10781 Dextransucrase DSRB CF60_RS13550 PF10733 Protein of unknown function (DUF2525) CF60_RS13560 PF17151 Periplasmic sensor domain CF60_RS13560 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS13565 PF09926 Uncharacterized small protein (DUF2158) CF60_RS13570 PF05661 Protein of unknown function (DUF808) CF60_RS13575 PF00892 EamA-like transporter family CF60_RS13580 PF03852 DNA mismatch endonuclease Vsr CF60_RS13585 PF00145 C-5 cytosine-specific DNA methylase CF60_RS13585 PF18284 DNA methylase N-terminal domain CF60_RS13590 PF01966 HD domain CF60_RS13600 PF00267 Gram-negative porin CF60_RS13615 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS13615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS13620 PF00072 Response regulator receiver domain CF60_RS13620 PF00486 Transcriptional regulatory protein, C terminal CF60_RS13625 PF00576 HIUase/Transthyretin family CF60_RS13630 PF00174 Oxidoreductase molybdopterin binding domain CF60_RS13635 PF01794 Ferric reductase like transmembrane component CF60_RS13640 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CF60_RS13655 PF06167 Glucose-regulated metallo-peptidase M90 CF60_RS13665 PF09134 Invasin, domain 3 CF60_RS13665 PF11924 Inverse autotransporter, beta-domain CF60_RS13665 PF02369 Bacterial Ig-like domain (group 1) CF60_RS13675 PF00083 Sugar (and other) transporter CF60_RS13675 PF07690 Major Facilitator Superfamily CF60_RS13680 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CF60_RS13680 PF01048 Phosphorylase superfamily CF60_RS13685 PF01709 Transcriptional regulator CF60_RS13695 PF14220 Domain of unknown function (DUF4329) CF60_RS13695 PF03527 RHS protein CF60_RS13695 PF05593 RHS Repeat CF60_RS13705 PF13693 Winged helix-turn-helix DNA-binding CF60_RS13730 PF01554 MatE CF60_RS13740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS13740 PF03466 LysR substrate binding domain CF60_RS13745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS13745 PF03466 LysR substrate binding domain CF60_RS13755 PF17969 L,D-transpeptidase C-terminal domain CF60_RS13755 PF03734 L,D-transpeptidase catalytic domain CF60_RS13760 PF02277 Phosphoribosyltransferase CF60_RS13765 PF02654 Cobalamin-5-phosphate synthase CF60_RS13770 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CF60_RS13785 PF04363 Protein of unknown function (DUF496) CF60_RS13790 PF04632 Fusaric acid resistance protein family CF60_RS13795 PF06445 GyrI-like small molecule binding domain CF60_RS13800 PF00768 D-alanyl-D-alanine carboxypeptidase CF60_RS13800 PF07943 Penicillin-binding protein 5, C-terminal domain CF60_RS13805 PF00929 Exonuclease CF60_RS13805 PF08411 Exonuclease C-terminal CF60_RS13810 PF13520 Amino acid permease CF60_RS13815 PF03466 LysR substrate binding domain CF60_RS13815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS13820 PF01370 NAD dependent epimerase/dehydratase family CF60_RS13825 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system CF60_RS13830 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CF60_RS13835 PF08029 HisG, C-terminal domain CF60_RS13835 PF01634 ATP phosphoribosyltransferase CF60_RS13840 PF00815 Histidinol dehydrogenase CF60_RS13845 PF00155 Aminotransferase class I and II CF60_RS13850 PF08645 Polynucleotide kinase 3 phosphatase CF60_RS13850 PF00475 Imidazoleglycerol-phosphate dehydratase CF60_RS13855 PF00117 Glutamine amidotransferase class-I CF60_RS13860 PF00977 Histidine biosynthesis protein CF60_RS13865 PF00977 Histidine biosynthesis protein CF60_RS13870 PF01502 Phosphoribosyl-AMP cyclohydrolase CF60_RS13870 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CF60_RS13875 PF01797 Transposase IS200 like CF60_RS13880 PF02706 Chain length determinant protein CF60_RS13885 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CF60_RS13885 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CF60_RS13885 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CF60_RS13890 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CF60_RS13890 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CF60_RS13895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CF60_RS13895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CF60_RS13895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CF60_RS13895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CF60_RS13900 PF00535 Glycosyl transferase family 2 CF60_RS13905 PF01050 Mannose-6-phosphate isomerase CF60_RS13905 PF00483 Nucleotidyl transferase CF60_RS13910 PF00293 NUDIX domain CF60_RS13915 PF01370 NAD dependent epimerase/dehydratase family CF60_RS13920 PF16363 GDP-mannose 4,6 dehydratase CF60_RS13925 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CF60_RS13930 PF00483 Nucleotidyl transferase CF60_RS13935 PF04321 RmlD substrate binding domain CF60_RS13940 PF16363 GDP-mannose 4,6 dehydratase CF60_RS13945 PF00483 Nucleotidyl transferase CF60_RS13955 PF00534 Glycosyl transferases group 1 CF60_RS13955 PF13439 Glycosyltransferase Family 4 CF60_RS13960 PF04230 Polysaccharide pyruvyl transferase CF60_RS13970 PF02397 Bacterial sugar transferase CF60_RS13975 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CF60_RS13975 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CF60_RS13975 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CF60_RS13975 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CF60_RS13980 PF00483 Nucleotidyl transferase CF60_RS13980 PF01050 Mannose-6-phosphate isomerase CF60_RS13985 PF00534 Glycosyl transferases group 1 CF60_RS13985 PF13579 Glycosyl transferase 4-like domain CF60_RS13990 PF00293 NUDIX domain CF60_RS13995 PF01370 NAD dependent epimerase/dehydratase family CF60_RS14000 PF16363 GDP-mannose 4,6 dehydratase CF60_RS14010 PF00535 Glycosyl transferase family 2 CF60_RS14020 PF13439 Glycosyltransferase Family 4 CF60_RS14020 PF00534 Glycosyl transferases group 1 CF60_RS14025 PF00132 Bacterial transferase hexapeptide (six repeats) CF60_RS14030 PF00535 Glycosyl transferase family 2 CF60_RS14035 PF13807 G-rich domain on putative tyrosine kinase CF60_RS14035 PF13614 AAA domain CF60_RS14035 PF02706 Chain length determinant protein CF60_RS14040 PF01451 Low molecular weight phosphotyrosine protein phosphatase CF60_RS14045 PF02563 Polysaccharide biosynthesis/export protein CF60_RS14045 PF10531 SLBB domain CF60_RS14045 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CF60_RS14050 PF00571 CBS domain CF60_RS14050 PF03741 Integral membrane protein TerC family CF60_RS14050 PF03471 Transporter associated domain CF60_RS14055 PF05170 AsmA family CF60_RS14060 PF00692 dUTPase CF60_RS14065 PF00485 Phosphoribulokinase / Uridine kinase family CF60_RS14070 PF05170 AsmA family CF60_RS14080 PF00485 Phosphoribulokinase / Uridine kinase family CF60_RS14085 PF00563 EAL domain CF60_RS14085 PF05231 MASE1 CF60_RS14085 PF13426 PAS domain CF60_RS14085 PF08447 PAS fold CF60_RS14085 PF08448 PAS fold CF60_RS14085 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS14090 PF08448 PAS fold CF60_RS14090 PF08447 PAS fold CF60_RS14090 PF00563 EAL domain CF60_RS14090 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS14090 PF05231 MASE1 CF60_RS14090 PF13426 PAS domain CF60_RS14095 PF06029 AlkA N-terminal domain CF60_RS14095 PF00730 HhH-GPD superfamily base excision DNA repair protein CF60_RS14100 PF00012 Hsp70 protein CF60_RS14115 PF00092 von Willebrand factor type A domain CF60_RS14120 PF13533 Biotin-lipoyl like CF60_RS14125 PF00873 AcrB/AcrD/AcrF family CF60_RS14130 PF00873 AcrB/AcrD/AcrF family CF60_RS14135 PF07690 Major Facilitator Superfamily CF60_RS14140 PF00672 HAMP domain CF60_RS14140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS14140 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS14145 PF00072 Response regulator receiver domain CF60_RS14145 PF00486 Transcriptional regulatory protein, C terminal CF60_RS14150 PF07411 Domain of unknown function (DUF1508) CF60_RS14155 PF01136 Peptidase family U32 CF60_RS14155 PF16325 Peptidase family U32 C-terminal domain CF60_RS14200 PF00239 Resolvase, N terminal domain CF60_RS14200 PF02796 Helix-turn-helix domain of resolvase CF60_RS14215 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CF60_RS14220 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CF60_RS14225 PF07484 Phage Tail Collar Domain CF60_RS14345 PF05840 Bacteriophage replication gene A protein (GPA) CF60_RS14380 PF02899 Phage integrase, N-terminal SAM-like domain CF60_RS14380 PF00589 Phage integrase family CF60_RS14395 PF00781 Diacylglycerol kinase catalytic domain CF60_RS14400 PF08220 DeoR-like helix-turn-helix domain CF60_RS14405 PF00107 Zinc-binding dehydrogenase CF60_RS14405 PF08240 Alcohol dehydrogenase GroES-like domain CF60_RS14410 PF03611 PTS system sugar-specific permease component CF60_RS14415 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CF60_RS14420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CF60_RS14425 PF08013 Tagatose 6 phosphate kinase CF60_RS14430 PF01116 Fructose-bisphosphate aldolase class-II CF60_RS14435 PF01791 DeoC/LacD family aldolase CF60_RS14440 PF03825 Nucleoside H+ symporter CF60_RS14445 PF03747 ADP-ribosylglycohydrolase CF60_RS14450 PF00294 pfkB family carbohydrate kinase CF60_RS14455 PF07702 UTRA domain CF60_RS14455 PF00392 Bacterial regulatory proteins, gntR family CF60_RS14460 PF01183 Glycosyl hydrolases family 25 CF60_RS14465 PF08543 Phosphomethylpyrimidine kinase CF60_RS14470 PF02110 Hydroxyethylthiazole kinase family CF60_RS14475 PF02583 Metal-sensitive transcriptional repressor CF60_RS14480 PF03824 High-affinity nickel-transport protein CF60_RS14485 PF11776 Nickel/cobalt transporter regulator CF60_RS14495 PF13954 PapC N-terminal domain CF60_RS14495 PF13953 PapC C-terminal domain CF60_RS14495 PF00577 Outer membrane usher protein CF60_RS14500 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CF60_RS14500 PF02753 Pili assembly chaperone PapD, C-terminal domain CF60_RS14505 PF00419 Fimbrial protein CF60_RS14515 PF10836 Protein of unknown function (DUF2574) CF60_RS14520 PF10609 NUBPL iron-transfer P-loop NTPase CF60_RS14525 PF01588 Putative tRNA binding domain CF60_RS14525 PF09334 tRNA synthetases class I (M) CF60_RS14530 PF13569 Domain of unknown function (DUF4132) CF60_RS14535 PF13569 Domain of unknown function (DUF4132) CF60_RS14550 PF07728 AAA domain (dynein-related subfamily) CF60_RS14560 PF05762 VWA domain containing CoxE-like protein CF60_RS14565 PF04434 SWIM zinc finger CF60_RS14570 PF06998 Protein of unknown function (DUF1307) CF60_RS14575 PF07308 Protein of unknown function (DUF1456) CF60_RS14580 PF04397 LytTr DNA-binding domain CF60_RS14580 PF00072 Response regulator receiver domain CF60_RS14585 PF07694 5TMR of 5TMR-LYT CF60_RS14585 PF06580 Histidine kinase CF60_RS14590 PF13411 MerR HTH family regulatory protein CF60_RS14600 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS14605 PF00005 ABC transporter CF60_RS14610 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS14615 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CF60_RS14620 PF00933 Glycosyl hydrolase family 3 N terminal domain CF60_RS14620 PF14310 Fibronectin type III-like domain CF60_RS14620 PF01915 Glycosyl hydrolase family 3 C-terminal domain CF60_RS14625 PF09330 D-lactate dehydrogenase, membrane binding CF60_RS14625 PF01565 FAD binding domain CF60_RS14630 PF00768 D-alanyl-D-alanine carboxypeptidase CF60_RS14635 PF04893 Yip1 domain CF60_RS14640 PF09335 SNARE associated Golgi protein CF60_RS14650 PF02321 Outer membrane efflux protein CF60_RS14660 PF01207 Dihydrouridine synthase (Dus) CF60_RS14665 PF01494 FAD binding domain CF60_RS14670 PF02798 Glutathione S-transferase, N-terminal domain CF60_RS14670 PF14497 Glutathione S-transferase, C-terminal domain CF60_RS14675 PF01557 Fumarylacetoacetate (FAA) hydrolase family CF60_RS14680 PF07883 Cupin domain CF60_RS14685 PF07690 Major Facilitator Superfamily CF60_RS14690 PF03466 LysR substrate binding domain CF60_RS14690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS14695 PF03788 LrgA family CF60_RS14700 PF04172 LrgB-like family CF60_RS14705 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CF60_RS14705 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CF60_RS14710 PF02698 DUF218 domain CF60_RS14715 PF10808 Protein of unknown function (DUF2542) CF60_RS14720 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CF60_RS14720 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS14725 PF01180 Dihydroorotate dehydrogenase CF60_RS14730 PF02653 Branched-chain amino acid transport system / permease component CF60_RS14735 PF00005 ABC transporter CF60_RS14740 PF13407 Periplasmic binding protein domain CF60_RS14745 PF00356 Bacterial regulatory proteins, lacI family CF60_RS14755 PF04235 Protein of unknown function (DUF418) CF60_RS14760 PF01227 GTP cyclohydrolase I CF60_RS14770 PF00756 Putative esterase CF60_RS14775 PF00593 TonB dependent receptor CF60_RS14775 PF07715 TonB-dependent Receptor Plug Domain CF60_RS14785 PF00324 Amino acid permease CF60_RS14790 PF03466 LysR substrate binding domain CF60_RS14790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS14795 PF03601 Conserved hypothetical protein 698 CF60_RS14800 PF01261 Xylose isomerase-like TIM barrel CF60_RS14805 PF00294 pfkB family carbohydrate kinase CF60_RS14810 PF07662 Na+ dependent nucleoside transporter C-terminus CF60_RS14810 PF01773 Na+ dependent nucleoside transporter N-terminus CF60_RS14815 PF01156 Inosine-uridine preferring nucleoside hydrolase CF60_RS14820 PF00027 Cyclic nucleotide-binding domain CF60_RS14825 PF01773 Na+ dependent nucleoside transporter N-terminus CF60_RS14825 PF07662 Na+ dependent nucleoside transporter C-terminus CF60_RS14830 PF04227 Indigoidine synthase A like protein CF60_RS14835 PF00294 pfkB family carbohydrate kinase CF60_RS14840 PF02378 Phosphotransferase system, EIIC CF60_RS14840 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CF60_RS14845 PF00294 pfkB family carbohydrate kinase CF60_RS14850 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CF60_RS14850 PF00381 PTS HPr component phosphorylation site CF60_RS14855 PF07690 Major Facilitator Superfamily CF60_RS14860 PF03692 Putative zinc- or iron-chelating domain CF60_RS14865 PF01132 Elongation factor P (EF-P) OB domain CF60_RS14865 PF08207 Elongation factor P (EF-P) KOW-like domain CF60_RS14865 PF09285 Elongation factor P, C-terminal CF60_RS14870 PF01232 Mannitol dehydrogenase Rossmann domain CF60_RS14870 PF08125 Mannitol dehydrogenase C-terminal domain CF60_RS14875 PF02492 CobW/HypB/UreG, nucleotide-binding domain CF60_RS14875 PF07683 Cobalamin synthesis protein cobW C-terminal domain CF60_RS14880 PF01569 PAP2 superfamily CF60_RS14885 PF00877 NlpC/P60 family CF60_RS14890 PF12792 CSS motif domain associated with EAL CF60_RS14890 PF00563 EAL domain CF60_RS14895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF60_RS14900 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS14905 PF12911 N-terminal TM domain of oligopeptide transport permease C CF60_RS14905 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS14910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CF60_RS14910 PF00005 ABC transporter CF60_RS14915 PF13989 YejG-like protein CF60_RS14920 PF07690 Major Facilitator Superfamily CF60_RS14925 PF00849 RNA pseudouridylate synthase CF60_RS14925 PF01479 S4 domain CF60_RS14930 PF00271 Helicase conserved C-terminal domain CF60_RS14930 PF04851 Type III restriction enzyme, res subunit CF60_RS14935 PF01386 Ribosomal L25p family CF60_RS14940 PF04245 37-kD nucleoid-associated bacterial protein CF60_RS14945 PF07208 Protein of unknown function (DUF1414) CF60_RS14950 PF11893 Domain of unknown function (DUF3413) CF60_RS14950 PF00884 Sulfatase CF60_RS14960 PF03212 Pertactin CF60_RS14960 PF16168 Adhesin of bacterial autotransporter system, probable stalk CF60_RS14960 PF03797 Autotransporter beta-domain CF60_RS14970 PF00196 Bacterial regulatory proteins, luxR family CF60_RS14970 PF00072 Response regulator receiver domain CF60_RS14975 PF03918 Cytochrome C biogenesis protein CF60_RS14980 PF08534 Redoxin CF60_RS14985 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CF60_RS14985 PF01578 Cytochrome C assembly protein CF60_RS14990 PF03100 CcmE CF60_RS14995 PF04995 Heme exporter protein D (CcmD) CF60_RS15000 PF01578 Cytochrome C assembly protein CF60_RS15005 PF03379 CcmB protein CF60_RS15010 PF00005 ABC transporter CF60_RS15015 PF03264 NapC/NirT cytochrome c family, N-terminal region CF60_RS15020 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CF60_RS15025 PF12801 4Fe-4S binding domain CF60_RS15025 PF13237 4Fe-4S dicluster domain CF60_RS15030 PF12838 4Fe-4S dicluster domain CF60_RS15030 PF12800 4Fe-4S binding domain CF60_RS15035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS15035 PF00384 Molybdopterin oxidoreductase CF60_RS15035 PF01568 Molydopterin dinucleotide binding domain CF60_RS15040 PF03927 NapD protein CF60_RS15045 PF13187 4Fe-4S dicluster domain CF60_RS15045 PF12800 4Fe-4S binding domain CF60_RS15045 PF00037 4Fe-4S binding domain CF60_RS15055 PF03974 Ecotin CF60_RS15060 PF06039 Malate:quinone oxidoreductase (Mqo) CF60_RS15065 PF00005 ABC transporter CF60_RS15070 PF13532 2OG-Fe(II) oxygenase superfamily CF60_RS15075 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CF60_RS15075 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CF60_RS15075 PF02805 Metal binding domain of Ada CF60_RS15075 PF12833 Helix-turn-helix domain CF60_RS15080 PF02424 ApbE family CF60_RS15085 PF00267 Gram-negative porin CF60_RS15095 PF16359 RcsD-ABL domain CF60_RS15095 PF01627 Hpt domain CF60_RS15095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS15100 PF00072 Response regulator receiver domain CF60_RS15100 PF00196 Bacterial regulatory proteins, luxR family CF60_RS15105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS15105 PF09456 RcsC Alpha-Beta-Loop (ABL) CF60_RS15105 PF00072 Response regulator receiver domain CF60_RS15105 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS15115 PF00158 Sigma-54 interaction domain CF60_RS15115 PF00072 Response regulator receiver domain CF60_RS15115 PF02954 Bacterial regulatory protein, Fis family CF60_RS15120 PF01144 Coenzyme A transferase CF60_RS15125 PF01144 Coenzyme A transferase CF60_RS15130 PF02667 Short chain fatty acid transporter CF60_RS15135 PF00108 Thiolase, N-terminal domain CF60_RS15135 PF02803 Thiolase, C-terminal domain CF60_RS15140 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) CF60_RS15145 PF10062 Predicted secreted protein (DUF2300) CF60_RS15145 PF08486 Stage II sporulation protein CF60_RS15150 PF07703 Alpha-2-macroglobulin bait region domain CF60_RS15150 PF00207 Alpha-2-macroglobulin family CF60_RS15150 PF01835 MG2 domain CF60_RS15155 PF06672 Protein of unknown function (DUF1175) CF60_RS15160 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) CF60_RS15165 PF00521 DNA gyrase/topoisomerase IV, subunit A CF60_RS15165 PF03989 DNA gyrase C-terminal domain, beta-propeller CF60_RS15185 PF00665 Integrase core domain CF60_RS15185 PF13276 HTH-like domain CF60_RS15185 PF13333 Integrase core domain CF60_RS15190 PF03797 Autotransporter beta-domain CF60_RS15190 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CF60_RS15190 PF12951 Passenger-associated-transport-repeat CF60_RS15200 PF02867 Ribonucleotide reductase, barrel domain CF60_RS15200 PF03477 ATP cone domain CF60_RS15200 PF00317 Ribonucleotide reductase, all-alpha domain CF60_RS15205 PF00268 Ribonucleotide reductase, small chain CF60_RS15210 PF00111 2Fe-2S iron-sulfur cluster binding domain CF60_RS15220 PF07690 Major Facilitator Superfamily CF60_RS15225 PF03466 LysR substrate binding domain CF60_RS15225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS15230 PF03009 Glycerophosphoryl diester phosphodiesterase family CF60_RS15235 PF07690 Major Facilitator Superfamily CF60_RS15240 PF01266 FAD dependent oxidoreductase CF60_RS15240 PF04324 BFD-like [2Fe-2S] binding domain CF60_RS15245 PF00890 FAD binding domain CF60_RS15250 PF13183 4Fe-4S dicluster domain CF60_RS15250 PF02754 Cysteine-rich domain CF60_RS15255 PF04754 Putative transposase, YhgA-like CF60_RS15265 PF03328 HpcH/HpaI aldolase/citrate lyase family CF60_RS15270 PF07690 Major Facilitator Superfamily CF60_RS15275 PF13378 Enolase C-terminal domain-like CF60_RS15275 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CF60_RS15280 PF01614 Bacterial transcriptional regulator CF60_RS15280 PF09339 IclR helix-turn-helix domain CF60_RS15285 PF00994 Probable molybdopterin binding domain CF60_RS15290 PF07437 YfaZ precursor CF60_RS15295 PF00293 NUDIX domain CF60_RS15300 PF00300 Histidine phosphatase superfamily (branch 1) CF60_RS15305 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CF60_RS15310 PF00535 Glycosyl transferase family 2 CF60_RS15315 PF00551 Formyl transferase CF60_RS15315 PF02911 Formyl transferase, C-terminal domain CF60_RS15315 PF01370 NAD dependent epimerase/dehydratase family CF60_RS15320 PF01522 Polysaccharide deacetylase CF60_RS15325 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CF60_RS15330 PF00892 EamA-like transporter family CF60_RS15345 PF13193 AMP-binding enzyme C-terminal domain CF60_RS15345 PF00501 AMP-binding enzyme CF60_RS15355 PF00378 Enoyl-CoA hydratase/isomerase CF60_RS15360 PF12697 Alpha/beta hydrolase family CF60_RS15365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CF60_RS15365 PF16582 Middle domain of thiamine pyrophosphate CF60_RS15365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CF60_RS15370 PF00425 chorismate binding enzyme CF60_RS15375 PF05957 Bacterial protein of unknown function (DUF883) CF60_RS15380 PF13673 Acetyltransferase (GNAT) domain CF60_RS15385 PF12706 Beta-lactamase superfamily domain CF60_RS15390 PF02902 Ulp1 protease family, C-terminal catalytic domain CF60_RS15395 PF04389 Peptidase family M28 CF60_RS15400 PF08974 Domain of unknown function (DUF1877) CF60_RS15405 PF00361 Proton-conducting membrane transporter CF60_RS15410 PF00361 Proton-conducting membrane transporter CF60_RS15415 PF00361 Proton-conducting membrane transporter CF60_RS15415 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CF60_RS15420 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CF60_RS15425 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CF60_RS15430 PF12838 4Fe-4S dicluster domain CF60_RS15435 PF00146 NADH dehydrogenase CF60_RS15440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS15440 PF00384 Molybdopterin oxidoreductase CF60_RS15440 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CF60_RS15440 PF01568 Molydopterin dinucleotide binding domain CF60_RS15445 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CF60_RS15445 PF10531 SLBB domain CF60_RS15445 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CF60_RS15455 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CF60_RS15455 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CF60_RS15460 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CF60_RS15465 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CF60_RS15470 PF03466 LysR substrate binding domain CF60_RS15470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS15475 PF00155 Aminotransferase class I and II CF60_RS15485 PF03600 Citrate transporter CF60_RS15485 PF02080 TrkA-C domain CF60_RS15490 PF13419 Haloacid dehalogenase-like hydrolase CF60_RS15495 PF03887 YfbU domain CF60_RS15500 PF04217 Protein of unknown function, DUF412 CF60_RS15510 PF00871 Acetokinase family CF60_RS15515 PF01515 Phosphate acetyl/butaryl transferase CF60_RS15515 PF07085 DRTGG domain CF60_RS15520 PF03606 C4-dicarboxylate anaerobic carrier CF60_RS15525 PF00293 NUDIX domain CF60_RS15530 PF12850 Calcineurin-like phosphoesterase superfamily domain CF60_RS15535 PF14834 Glutathione S-transferase, C-terminal domain CF60_RS15535 PF02798 Glutathione S-transferase, N-terminal domain CF60_RS15540 PF00043 Glutathione S-transferase, C-terminal domain CF60_RS15540 PF02798 Glutathione S-transferase, N-terminal domain CF60_RS15545 PF02152 Dihydroneopterin aldolase CF60_RS15550 PF01370 NAD dependent epimerase/dehydratase family CF60_RS15550 PF08338 Domain of unknown function (DUF1731) CF60_RS15555 PF04754 Putative transposase, YhgA-like CF60_RS15560 PF00005 ABC transporter CF60_RS15565 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS15570 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS15575 PF00497 Bacterial extracellular solute-binding proteins, family 3 CF60_RS15580 PF00497 Bacterial extracellular solute-binding proteins, family 3 CF60_RS15585 PF02441 Flavoprotein CF60_RS15590 PF00156 Phosphoribosyl transferase domain CF60_RS15595 PF02674 Colicin V production protein CF60_RS15600 PF05036 Sporulation related domain CF60_RS15605 PF08245 Mur ligase middle domain CF60_RS15605 PF02875 Mur ligase family, glutamate ligase domain CF60_RS15610 PF01039 Carboxyl transferase domain CF60_RS15610 PF17848 Acetyl-coA carboxylase zinc finger domain CF60_RS15615 PF09335 SNARE associated Golgi protein CF60_RS15620 PF01416 tRNA pseudouridine synthase CF60_RS15625 PF01118 Semialdehyde dehydrogenase, NAD binding domain CF60_RS15625 PF02774 Semialdehyde dehydrogenase, dimerisation domain CF60_RS15630 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CF60_RS15630 PF11890 Domain of unknown function (DUF3410) CF60_RS15630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CF60_RS15640 PF07690 Major Facilitator Superfamily CF60_RS15645 PF00109 Beta-ketoacyl synthase, N-terminal domain CF60_RS15645 PF02801 Beta-ketoacyl synthase, C-terminal domain CF60_RS15650 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CF60_RS15650 PF01266 FAD dependent oxidoreductase CF60_RS15655 PF08891 YfcL protein CF60_RS15660 PF04315 Elongation factor P hydroxylase CF60_RS15665 PF01925 Sulfite exporter TauE/SafE CF60_RS15670 PF03411 Penicillin-insensitive murein endopeptidase CF60_RS15675 PF01264 Chorismate synthase CF60_RS15680 PF05175 Methyltransferase small domain CF60_RS15685 PF01713 Smr domain CF60_RS15690 PF13276 HTH-like domain CF60_RS15690 PF00665 Integrase core domain CF60_RS15690 PF13333 Integrase core domain CF60_RS15705 PF11245 Protein of unknown function (DUF2544) CF60_RS15710 PF00419 Fimbrial protein CF60_RS15715 PF00419 Fimbrial protein CF60_RS15720 PF00419 Fimbrial protein CF60_RS15725 PF02753 Pili assembly chaperone PapD, C-terminal domain CF60_RS15725 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CF60_RS15730 PF00577 Outer membrane usher protein CF60_RS15730 PF13953 PapC C-terminal domain CF60_RS15730 PF13954 PapC N-terminal domain CF60_RS15735 PF00419 Fimbrial protein CF60_RS15740 PF00300 Histidine phosphatase superfamily (branch 1) CF60_RS15745 PF00378 Enoyl-CoA hydratase/isomerase CF60_RS15745 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CF60_RS15745 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CF60_RS15750 PF02803 Thiolase, C-terminal domain CF60_RS15750 PF00108 Thiolase, N-terminal domain CF60_RS15755 PF04175 Protein of unknown function (DUF406) CF60_RS15760 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CF60_RS15770 PF04333 MlaA lipoprotein CF60_RS15775 PF01226 Formate/nitrite transporter CF60_RS15795 PF00294 pfkB family carbohydrate kinase CF60_RS15800 PF08244 Glycosyl hydrolases family 32 C terminal CF60_RS15800 PF00251 Glycosyl hydrolases family 32 N-terminal domain CF60_RS15805 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CF60_RS15805 PF00356 Bacterial regulatory proteins, lacI family CF60_RS15810 PF02447 GntP family permease CF60_RS15815 PF00291 Pyridoxal-phosphate dependent enzyme CF60_RS15820 PF07690 Major Facilitator Superfamily CF60_RS15825 PF00529 HlyD membrane-fusion protein of T1SS CF60_RS15825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CF60_RS15830 PF00196 Bacterial regulatory proteins, luxR family CF60_RS15830 PF00072 Response regulator receiver domain CF60_RS15835 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS15835 PF00072 Response regulator receiver domain CF60_RS15835 PF00497 Bacterial extracellular solute-binding proteins, family 3 CF60_RS15835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS15840 PF02515 CoA-transferase family III CF60_RS15845 PF03547 Membrane transport protein CF60_RS15850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CF60_RS15850 PF00205 Thiamine pyrophosphate enzyme, central domain CF60_RS15850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CF60_RS15855 PF02515 CoA-transferase family III CF60_RS15860 PF10938 YfdX protein CF60_RS15875 PF10810 Protein of unknown function (DUF2545) CF60_RS15880 PF03279 Bacterial lipid A biosynthesis acyltransferase CF60_RS15885 PF00155 Aminotransferase class I and II CF60_RS15890 PF06580 Histidine kinase CF60_RS15890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS15890 PF07694 5TMR of 5TMR-LYT CF60_RS15895 PF04397 LytTr DNA-binding domain CF60_RS15895 PF00072 Response regulator receiver domain CF60_RS15900 PF12833 Helix-turn-helix domain CF60_RS15905 PF02896 PEP-utilising enzyme, TIM barrel domain CF60_RS15905 PF00381 PTS HPr component phosphorylation site CF60_RS15905 PF05524 PEP-utilising enzyme, N-terminal CF60_RS15905 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CF60_RS15905 PF00391 PEP-utilising enzyme, mobile domain CF60_RS15910 PF05343 M42 glutamyl aminopeptidase CF60_RS15915 PF00557 Metallopeptidase family M24 CF60_RS15915 PF01321 Creatinase/Prolidase N-terminal domain CF60_RS15920 PF02378 Phosphotransferase system, EIIC CF60_RS15925 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CF60_RS15930 PF02685 Glucokinase CF60_RS15935 PF00654 Voltage gated chloride channel CF60_RS15940 PF10697 Protein of unknown function (DUF2502) CF60_RS15950 PF01566 Natural resistance-associated macrophage protein CF60_RS15955 PF00563 EAL domain CF60_RS15955 PF05231 MASE1 CF60_RS15970 PF07037 Putative transcription regulator (DUF1323) CF60_RS15975 PF07037 Putative transcription regulator (DUF1323) CF60_RS15980 PF00749 tRNA synthetases class I (E and Q), catalytic domain CF60_RS16005 PF03466 LysR substrate binding domain CF60_RS16005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS16015 PF03825 Nucleoside H+ symporter CF60_RS16020 PF01048 Phosphorylase superfamily CF60_RS16025 PF03502 Nucleoside-specific channel-forming protein, Tsx CF60_RS16030 PF03466 LysR substrate binding domain CF60_RS16030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS16035 PF13593 SBF-like CPA transporter family (DUF4137) CF60_RS16040 PF12843 Putative quorum-sensing-regulated virulence factor CF60_RS16045 PF12826 Helix-hairpin-helix motif CF60_RS16045 PF00533 BRCA1 C Terminus (BRCT) domain CF60_RS16045 PF03120 NAD-dependent DNA ligase OB-fold domain CF60_RS16045 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CF60_RS16045 PF01653 NAD-dependent DNA ligase adenylation domain CF60_RS16050 PF04354 ZipA, C-terminal FtsZ-binding domain CF60_RS16060 PF00291 Pyridoxal-phosphate dependent enzyme CF60_RS16065 PF00381 PTS HPr component phosphorylation site CF60_RS16070 PF02896 PEP-utilising enzyme, TIM barrel domain CF60_RS16070 PF00391 PEP-utilising enzyme, mobile domain CF60_RS16070 PF05524 PEP-utilising enzyme, N-terminal CF60_RS16075 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CF60_RS16085 PF17263 Family of unknown function (DUF5329) CF60_RS16090 PF00291 Pyridoxal-phosphate dependent enzyme CF60_RS16095 PF00005 ABC transporter CF60_RS16100 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS16105 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS16120 PF01380 SIS domain CF60_RS16120 PF01418 Helix-turn-helix domain, rpiR family CF60_RS16125 PF01380 SIS domain CF60_RS16130 PF02378 Phosphotransferase system, EIIC CF60_RS16130 PF00367 phosphotransferase system, EIIB CF60_RS16135 PF00144 Beta-lactamase CF60_RS16140 PF04261 Dyp-type peroxidase family CF60_RS16145 PF06572 Protein of unknown function (DUF1131) CF60_RS16150 PF11143 Protein of unknown function (DUF2919) CF60_RS16155 PF00583 Acetyltransferase (GNAT) family CF60_RS16160 PF01520 N-acetylmuramoyl-L-alanine amidase CF60_RS16165 PF01218 Coproporphyrinogen III oxidase CF60_RS16170 PF12833 Helix-turn-helix domain CF60_RS16175 PF00936 BMC domain CF60_RS16175 PF16365 Ethanolamine utilization protein EutK C-terminus CF60_RS16180 PF00936 BMC domain CF60_RS16185 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CF60_RS16190 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CF60_RS16195 PF06277 Ethanolamine utilisation protein EutA CF60_RS16200 PF04346 Ethanolamine utilisation protein, EutH CF60_RS16205 PF00465 Iron-containing alcohol dehydrogenase CF60_RS16215 PF00171 Aldehyde dehydrogenase family CF60_RS16220 PF03319 Ethanolamine utilisation protein EutN/carboxysome CF60_RS16225 PF00936 BMC domain CF60_RS16230 PF01515 Phosphate acetyl/butaryl transferase CF60_RS16235 PF01923 Cobalamin adenosyltransferase CF60_RS16240 PF06249 Ethanolamine utilisation protein EutQ CF60_RS16245 PF10662 Ethanolamine utilisation - propanediol utilisation CF60_RS16250 PF00936 BMC domain CF60_RS16255 PF00390 Malic enzyme, N-terminal domain CF60_RS16255 PF01515 Phosphate acetyl/butaryl transferase CF60_RS16255 PF03949 Malic enzyme, NAD binding domain CF60_RS16260 PF00923 Transaldolase/Fructose-6-phosphate aldolase CF60_RS16265 PF00456 Transketolase, thiamine diphosphate binding domain CF60_RS16265 PF02780 Transketolase, C-terminal domain CF60_RS16265 PF02779 Transketolase, pyrimidine binding domain CF60_RS16270 PF06674 Protein of unknown function (DUF1176) CF60_RS16275 PF00293 NUDIX domain CF60_RS16280 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS16280 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CF60_RS16280 PF13247 4Fe-4S dicluster domain CF60_RS16285 PF00672 HAMP domain CF60_RS16285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS16285 PF07730 Histidine kinase CF60_RS16285 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CF60_RS16290 PF00873 AcrB/AcrD/AcrF family CF60_RS16300 PF03960 ArsC family CF60_RS16305 PF01546 Peptidase family M20/M25/M40 CF60_RS16305 PF07687 Peptidase dimerisation domain CF60_RS16310 PF13980 Uncharacterised protein family (UPF0370) CF60_RS16335 PF04228 Putative neutral zinc metallopeptidase CF60_RS16340 PF01259 SAICAR synthetase CF60_RS16350 PF06804 NlpB/DapX lipoprotein CF60_RS16355 PF00701 Dihydrodipicolinate synthetase family CF60_RS16360 PF01842 ACT domain CF60_RS16365 PF00578 AhpC/TSA family CF60_RS16370 PF00037 4Fe-4S binding domain CF60_RS16370 PF12798 4Fe-4S binding domain CF60_RS16375 PF00361 Proton-conducting membrane transporter CF60_RS16380 PF00146 NADH dehydrogenase CF60_RS16385 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CF60_RS16385 PF00361 Proton-conducting membrane transporter CF60_RS16390 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CF60_RS16395 PF00361 Proton-conducting membrane transporter CF60_RS16395 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CF60_RS16400 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CF60_RS16400 PF00374 Nickel-dependent hydrogenase CF60_RS16400 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CF60_RS16405 PF12838 4Fe-4S dicluster domain CF60_RS16410 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CF60_RS16415 PF07450 Formate hydrogenlyase maturation protein HycH CF60_RS16420 PF01590 GAF domain CF60_RS16420 PF00158 Sigma-54 interaction domain CF60_RS16425 PF01226 Formate/nitrite transporter CF60_RS16430 PF01594 AI-2E family transporter CF60_RS16435 PF01435 Peptidase family M48 CF60_RS16440 PF03960 ArsC family CF60_RS16445 PF00308 Bacterial dnaA protein CF60_RS16450 PF00860 Permease family CF60_RS16460 PF02769 AIR synthase related protein, C-terminal domain CF60_RS16460 PF00586 AIR synthase related protein, N-terminal domain CF60_RS16465 PF00551 Formyl transferase CF60_RS16470 PF02503 Polyphosphate kinase middle domain CF60_RS16470 PF13090 Polyphosphate kinase C-terminal domain 2 CF60_RS16470 PF17941 Polyphosphate kinase C-terminal domain 1 CF60_RS16470 PF13089 Polyphosphate kinase N-terminal domain CF60_RS16475 PF02541 Ppx/GppA phosphatase family CF60_RS16480 PF00563 EAL domain CF60_RS16480 PF05231 MASE1 CF60_RS16490 PF11119 Protein of unknown function (DUF2633) CF60_RS16495 PF05433 Glycine zipper 2TM domain CF60_RS16500 PF17358 Family of unknown function (DUF5384) CF60_RS16505 PF00958 GMP synthase C terminal domain CF60_RS16505 PF00117 Glutamine amidotransferase class-I CF60_RS16505 PF02540 NAD synthase CF60_RS16510 PF00571 CBS domain CF60_RS16510 PF00478 IMP dehydrogenase / GMP reductase domain CF60_RS16515 PF13742 OB-fold nucleic acid binding domain CF60_RS16515 PF02601 Exonuclease VII, large subunit CF60_RS16530 PF11924 Inverse autotransporter, beta-domain CF60_RS16530 PF07979 Intimin C-type lectin domain CF60_RS16530 PF02369 Bacterial Ig-like domain (group 1) CF60_RS16530 PF09134 Invasin, domain 3 CF60_RS16535 PF07191 zinc-ribbons CF60_RS16545 PF13360 PQQ-like domain CF60_RS16550 PF09976 Tetratricopeptide repeat-like domain CF60_RS16555 PF03129 Anticodon binding domain CF60_RS16555 PF13393 Histidyl-tRNA synthetase CF60_RS16560 PF04551 GcpE protein CF60_RS16565 PF13464 Domain of unknown function (DUF4115) CF60_RS16570 PF04055 Radical SAM superfamily CF60_RS16575 PF00334 Nucleoside diphosphate kinase CF60_RS16580 PF00912 Transglycosylase CF60_RS16580 PF06832 Penicillin-Binding Protein C-terminus Family CF60_RS16580 PF00905 Penicillin binding protein transpeptidase domain CF60_RS16585 PF01835 MG2 domain CF60_RS16585 PF07678 A-macroglobulin TED domain CF60_RS16585 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CF60_RS16585 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CF60_RS16585 PF07703 Alpha-2-macroglobulin bait region domain CF60_RS16585 PF17962 Bacterial macroglobulin domain 6 CF60_RS16585 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CF60_RS16585 PF00207 Alpha-2-macroglobulin family CF60_RS16585 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CF60_RS16590 PF00581 Rhodanese-like domain CF60_RS16595 PF07179 SseB protein N-terminal domain CF60_RS16595 PF14581 SseB protein C-terminal domain CF60_RS16600 PF00883 Cytosol aminopeptidase family, catalytic domain CF60_RS16600 PF12404 Peptidase CF60_RS16605 PF04384 Iron-sulphur cluster assembly CF60_RS16610 PF00111 2Fe-2S iron-sulfur cluster binding domain CF60_RS16615 PF00012 Hsp70 protein CF60_RS16620 PF07743 HSCB C-terminal oligomerisation domain CF60_RS16625 PF01521 Iron-sulphur cluster biosynthesis CF60_RS16630 PF01592 NifU-like N terminal domain CF60_RS16635 PF00266 Aminotransferase class-V CF60_RS16640 PF02082 Transcriptional regulator CF60_RS16645 PF00588 SpoU rRNA Methylase family CF60_RS16650 PF00459 Inositol monophosphatase family CF60_RS16655 PF12146 Serine aminopeptidase, S33 CF60_RS16660 PF00874 PRD domain CF60_RS16665 PF12832 MFS_1 like family CF60_RS16670 PF03466 LysR substrate binding domain CF60_RS16670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS16675 PF00355 Rieske [2Fe-2S] domain CF60_RS16675 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CF60_RS16680 PF00866 Ring hydroxylating beta subunit CF60_RS16685 PF00355 Rieske [2Fe-2S] domain CF60_RS16690 PF00106 short chain dehydrogenase CF60_RS16695 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS16695 PF14759 Reductase C-terminal CF60_RS16700 PF07681 DoxX CF60_RS16705 PF01263 Aldose 1-epimerase CF60_RS16710 PF00107 Zinc-binding dehydrogenase CF60_RS16710 PF08240 Alcohol dehydrogenase GroES-like domain CF60_RS16715 PF02653 Branched-chain amino acid transport system / permease component CF60_RS16720 PF00005 ABC transporter CF60_RS16725 PF13407 Periplasmic binding protein domain CF60_RS16730 PF17128 Domain of unknown function (DUF5107) CF60_RS16730 PF13181 Tetratricopeptide repeat CF60_RS16735 PF00480 ROK family CF60_RS16740 PF00464 Serine hydroxymethyltransferase CF60_RS16750 PF00042 Globin CF60_RS16750 PF00175 Oxidoreductase NAD-binding domain CF60_RS16750 PF00970 Oxidoreductase FAD-binding domain CF60_RS16755 PF00543 Nitrogen regulatory protein P-II CF60_RS16760 PF00158 Sigma-54 interaction domain CF60_RS16760 PF00072 Response regulator receiver domain CF60_RS16765 PF13942 YfhG lipoprotein CF60_RS16770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS16770 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS16775 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CF60_RS16775 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CF60_RS16775 PF02769 AIR synthase related protein, C-terminal domain CF60_RS16780 PF00497 Bacterial extracellular solute-binding proteins, family 3 CF60_RS16780 PF01464 Transglycosylase SLT domain CF60_RS16785 PF14437 MafB19-like deaminase CF60_RS16795 PF01380 SIS domain CF60_RS16795 PF01418 Helix-turn-helix domain, rpiR family CF60_RS16800 PF12838 4Fe-4S dicluster domain CF60_RS16820 PF01648 4'-phosphopantetheinyl transferase superfamily CF60_RS16825 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CF60_RS16830 PF11967 Recombination protein O N terminal CF60_RS16830 PF02565 Recombination protein O C terminal CF60_RS16835 PF01926 50S ribosome-binding GTPase CF60_RS16835 PF07650 KH domain CF60_RS16840 PF14622 Ribonuclease-III-like CF60_RS16840 PF00035 Double-stranded RNA binding motif CF60_RS16845 PF10502 Signal peptidase, peptidase S26 CF60_RS16850 PF03144 Elongation factor Tu domain 2 CF60_RS16850 PF06421 GTP-binding protein LepA C-terminus CF60_RS16850 PF00679 Elongation factor G C-terminus CF60_RS16850 PF00009 Elongation factor Tu GTP binding domain CF60_RS16860 PF17188 MucB/RseB C-terminal domain CF60_RS16860 PF03888 MucB/RseB N-terminal domain CF60_RS16865 PF03873 Anti sigma-E protein RseA, C-terminal domain CF60_RS16865 PF03872 Anti sigma-E protein RseA, N-terminal domain CF60_RS16870 PF04542 Sigma-70 region 2 CF60_RS16870 PF08281 Sigma-70, region 4 CF60_RS16880 PF02910 Fumarate reductase flavoprotein C-term CF60_RS16880 PF00890 FAD binding domain CF60_RS16885 PF05175 Methyltransferase small domain CF60_RS16890 PF00271 Helicase conserved C-terminal domain CF60_RS16890 PF00270 DEAD/DEAH box helicase CF60_RS16895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS16895 PF03466 LysR substrate binding domain CF60_RS16900 PF01810 LysE type translocator CF60_RS16905 PF01228 Glycine radical CF60_RS16910 PF03167 Uracil DNA glycosylase superfamily CF60_RS16915 PF08032 RNA 2'-O ribose methyltransferase substrate binding CF60_RS16915 PF00588 SpoU rRNA Methylase family CF60_RS16925 PF00085 Thioredoxin CF60_RS16930 PF03942 DTW domain CF60_RS16935 PF13607 Succinyl-CoA ligase like flavodoxin domain CF60_RS16935 PF13380 CoA binding domain CF60_RS16935 PF00583 Acetyltransferase (GNAT) family CF60_RS16940 PF13091 PLD-like domain CF60_RS16945 PF10043 Predicted periplasmic lipoprotein (DUF2279) CF60_RS16950 PF00083 Sugar (and other) transporter CF60_RS16955 PF00665 Integrase core domain CF60_RS16955 PF13276 HTH-like domain CF60_RS16955 PF13333 Integrase core domain CF60_RS16990 PF10431 C-terminal, D2-small domain, of ClpB protein CF60_RS16990 PF00004 ATPase family associated with various cellular activities (AAA) CF60_RS16990 PF07724 AAA domain (Cdc48 subfamily) CF60_RS16990 PF17871 AAA lid domain CF60_RS16990 PF02861 Clp amino terminal domain, pathogenicity island component CF60_RS16995 PF02578 Multi-copper polyphenol oxidoreductase laccase CF60_RS17000 PF00849 RNA pseudouridylate synthase CF60_RS17000 PF01479 S4 domain CF60_RS17005 PF13525 Outer membrane lipoprotein CF60_RS17015 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CF60_RS17020 PF00800 Prephenate dehydratase CF60_RS17020 PF01817 Chorismate mutase type II CF60_RS17025 PF01817 Chorismate mutase type II CF60_RS17025 PF02153 Prephenate dehydrogenase CF60_RS17030 PF00793 DAHP synthetase I family CF60_RS17035 PF10973 Protein of unknown function (DUF2799) CF60_RS17040 PF13689 YfiR/HmsC-like CF60_RS17045 PF17152 Periplasmic sensor domain CF60_RS17045 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS17050 PF00691 OmpA family CF60_RS17055 PF01245 Ribosomal protein L19 CF60_RS17060 PF01746 tRNA (Guanine-1)-methyltransferase CF60_RS17065 PF05239 PRC-barrel domain CF60_RS17065 PF01782 RimM N-terminal domain CF60_RS17070 PF00886 Ribosomal protein S16 CF60_RS17075 PF02881 SRP54-type protein, helical bundle domain CF60_RS17075 PF00448 SRP54-type protein, GTPase domain CF60_RS17075 PF02978 Signal peptide binding domain CF60_RS17080 PF01578 Cytochrome C assembly protein CF60_RS17085 PF00571 CBS domain CF60_RS17085 PF03471 Transporter associated domain CF60_RS17085 PF01595 Cyclin M transmembrane N-terminal domain CF60_RS17090 PF01025 GrpE CF60_RS17100 PF01513 ATP-NAD kinase CF60_RS17105 PF02463 RecF/RecN/SMC N terminal domain CF60_RS17110 PF04355 SmpA / OmlA family CF60_RS17115 PF03658 RnfH family Ubiquitin CF60_RS17120 PF03364 Polyketide cyclase / dehydrase and lipid transport CF60_RS17125 PF01668 SmpB protein CF60_RS17130 PF00589 Phage integrase family CF60_RS17130 PF13356 Arm DNA-binding domain CF60_RS17215 PF17345 Family of unknown function (DUF5375) CF60_RS17225 PF03797 Autotransporter beta-domain CF60_RS17235 PF17621 Family of unknown function (DUF5508) CF60_RS17245 PF00128 Alpha amylase, catalytic domain CF60_RS17250 PF08943 CsiD CF60_RS17255 PF01266 FAD dependent oxidoreductase CF60_RS17260 PF00171 Aldehyde dehydrogenase family CF60_RS17265 PF00202 Aminotransferase class-III CF60_RS17270 PF00324 Amino acid permease CF60_RS17275 PF00392 Bacterial regulatory proteins, gntR family CF60_RS17275 PF07729 FCD domain CF60_RS17280 PF04972 BON domain CF60_RS17280 PF01476 LysM domain CF60_RS17285 PF01679 Proteolipid membrane potential modulator CF60_RS17290 PF01022 Bacterial regulatory protein, arsR family CF60_RS17295 PF11127 Protein of unknown function (DUF2892) CF60_RS17295 PF00581 Rhodanese-like domain CF60_RS17300 PF00816 H-NS histone family CF60_RS17305 PF06610 L-alanine exporter CF60_RS17310 PF09400 Protein of unknown function (DUF2002) CF60_RS17315 PF05957 Bacterial protein of unknown function (DUF883) CF60_RS17320 PF00392 Bacterial regulatory proteins, gntR family CF60_RS17320 PF00155 Aminotransferase class I and II CF60_RS17325 PF02627 Carboxymuconolactone decarboxylase family CF60_RS17330 PF00462 Glutaredoxin CF60_RS17335 PF07972 NrdI Flavodoxin like CF60_RS17340 PF08343 Ribonucleotide reductase N-terminal CF60_RS17340 PF00317 Ribonucleotide reductase, all-alpha domain CF60_RS17340 PF02867 Ribonucleotide reductase, barrel domain CF60_RS17345 PF00268 Ribonucleotide reductase, small chain CF60_RS17350 PF00005 ABC transporter CF60_RS17350 PF00571 CBS domain CF60_RS17355 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS17360 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CF60_RS17365 PF07690 Major Facilitator Superfamily CF60_RS17370 PF03591 AzlC protein CF60_RS17375 PF05437 Branched-chain amino acid transport protein (AzlD) CF60_RS17380 PF01047 MarR family CF60_RS17385 PF00529 HlyD membrane-fusion protein of T1SS CF60_RS17385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CF60_RS17390 PF07690 Major Facilitator Superfamily CF60_RS17395 PF02664 S-Ribosylhomocysteinase (LuxS) CF60_RS17400 PF04262 Glutamate-cysteine ligase CF60_RS17405 PF09335 SNARE associated Golgi protein CF60_RS17410 PF13419 Haloacid dehalogenase-like hydrolase CF60_RS17445 PF02599 Global regulator protein family CF60_RS17450 PF02272 DHHA1 domain CF60_RS17450 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CF60_RS17450 PF01411 tRNA synthetases class II (A) CF60_RS17460 PF02631 RecX family CF60_RS17465 PF00154 recA bacterial DNA recombination protein CF60_RS17470 PF02464 Competence-damaged protein CF60_RS17475 PF13406 Transglycosylase SLT domain CF60_RS17480 PF03608 PTS system enzyme II sorbitol-specific factor CF60_RS17485 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CF60_RS17485 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CF60_RS17490 PF03829 PTS system glucitol/sorbitol-specific IIA component CF60_RS17495 PF00106 short chain dehydrogenase CF60_RS17500 PF06923 Glucitol operon activator protein (GutM) CF60_RS17505 PF00455 DeoR C terminal sensor domain CF60_RS17505 PF08220 DeoR-like helix-turn-helix domain CF60_RS17510 PF01380 SIS domain CF60_RS17510 PF00571 CBS domain CF60_RS17515 PF01590 GAF domain CF60_RS17515 PF00158 Sigma-54 interaction domain CF60_RS17520 PF00301 Rubredoxin CF60_RS17520 PF00753 Metallo-beta-lactamase superfamily CF60_RS17520 PF00258 Flavodoxin CF60_RS17525 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS17525 PF18113 Rubredoxin binding C-terminal domain CF60_RS17530 PF07503 HypF finger CF60_RS17530 PF01300 Telomere recombination CF60_RS17530 PF17788 HypF Kae1-like domain CF60_RS17530 PF00708 Acylphosphatase CF60_RS17535 PF12800 4Fe-4S binding domain CF60_RS17535 PF13247 4Fe-4S dicluster domain CF60_RS17540 PF00356 Bacterial regulatory proteins, lacI family CF60_RS17545 PF00367 phosphotransferase system, EIIB CF60_RS17545 PF02378 Phosphotransferase system, EIIC CF60_RS17550 PF00232 Glycosyl hydrolase family 1 CF60_RS17555 PF01381 Helix-turn-helix CF60_RS17560 PF01750 Hydrogenase maturation protease CF60_RS17565 PF07450 Formate hydrogenlyase maturation protein HycH CF60_RS17570 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CF60_RS17580 PF00374 Nickel-dependent hydrogenase CF60_RS17580 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CF60_RS17580 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CF60_RS17585 PF00146 NADH dehydrogenase CF60_RS17590 PF00361 Proton-conducting membrane transporter CF60_RS17595 PF13247 4Fe-4S dicluster domain CF60_RS17605 PF11046 Transcriptional repressor of hyc and hyp operons CF60_RS17610 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CF60_RS17615 PF02492 CobW/HypB/UreG, nucleotide-binding domain CF60_RS17620 PF01455 HupF/HypC family CF60_RS17625 PF01924 Hydrogenase formation hypA family CF60_RS17630 PF00586 AIR synthase related protein, N-terminal domain CF60_RS17630 PF02769 AIR synthase related protein, C-terminal domain CF60_RS17635 PF00158 Sigma-54 interaction domain CF60_RS17635 PF01590 GAF domain CF60_RS17645 PF11756 Nitrous oxide-stimulated promoter CF60_RS17650 PF05190 MutS family domain IV CF60_RS17650 PF01624 MutS domain I CF60_RS17650 PF00488 MutS domain V CF60_RS17650 PF05188 MutS domain II CF60_RS17650 PF05192 MutS domain III CF60_RS17660 PF00149 Calcineurin-like phosphoesterase CF60_RS17670 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CF60_RS17675 PF02441 Flavoprotein CF60_RS17680 PF01047 MarR family CF60_RS17685 PF04539 Sigma-70 region 3 CF60_RS17685 PF04545 Sigma-70, region 4 CF60_RS17685 PF00140 Sigma-70 factor, region 1.2 CF60_RS17685 PF04542 Sigma-70 region 2 CF60_RS17690 PF01476 LysM domain CF60_RS17690 PF01551 Peptidase family M23 CF60_RS17700 PF01975 Survival protein SurE CF60_RS17705 PF01142 tRNA pseudouridine synthase D (TruD) CF60_RS17710 PF02542 YgbB family CF60_RS17715 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CF60_RS17720 PF04977 Septum formation initiator CF60_RS17725 PF12084 Protein of unknown function (DUF3561) CF60_RS17735 PF00009 Elongation factor Tu GTP binding domain CF60_RS17740 PF01507 Phosphoadenosine phosphosulfate reductase family CF60_RS17745 PF04389 Peptidase family M28 CF60_RS17750 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) CF60_RS17755 PF01867 CRISPR associated protein Cas1 CF60_RS17765 PF09704 CRISPR-associated protein (Cas_Cas5) CF60_RS17770 PF09344 CT1975-like protein CF60_RS17780 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) CF60_RS17785 PF00271 Helicase conserved C-terminal domain CF60_RS17785 PF18019 HD domain CF60_RS17785 PF00270 DEAD/DEAH box helicase CF60_RS17790 PF01848 Hok/gef family CF60_RS17795 PF01507 Phosphoadenosine phosphosulfate reductase family CF60_RS17800 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CF60_RS17800 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CF60_RS17805 PF00175 Oxidoreductase NAD-binding domain CF60_RS17805 PF00258 Flavodoxin CF60_RS17805 PF00667 FAD binding domain CF60_RS17810 PF01242 6-pyruvoyl tetrahydropterin synthase CF60_RS17815 PF01266 FAD dependent oxidoreductase CF60_RS17825 PF04309 Glycerol-3-phosphate responsive antiterminator CF60_RS17830 PF01012 Electron transfer flavoprotein domain CF60_RS17830 PF00766 Electron transfer flavoprotein FAD-binding domain CF60_RS17835 PF01012 Electron transfer flavoprotein domain CF60_RS17840 PF00083 Sugar (and other) transporter CF60_RS17845 PF02913 FAD linked oxidases, C-terminal domain CF60_RS17845 PF01565 FAD binding domain CF60_RS17855 PF07690 Major Facilitator Superfamily CF60_RS17865 PF04055 Radical SAM superfamily CF60_RS17875 PF04536 TPM domain CF60_RS17880 PF03952 Enolase, N-terminal domain CF60_RS17880 PF00113 Enolase, C-terminal TIM barrel domain CF60_RS17885 PF00117 Glutamine amidotransferase class-I CF60_RS17885 PF06418 CTP synthase N-terminus CF60_RS17890 PF03819 MazG nucleotide pyrophosphohydrolase domain CF60_RS17895 PF02824 TGS domain CF60_RS17895 PF04607 Region found in RelA / SpoT proteins CF60_RS17895 PF13291 ACT domain CF60_RS17900 PF01938 TRAM domain CF60_RS17900 PF05958 tRNA (Uracil-5-)-methyltransferase CF60_RS17905 PF00672 HAMP domain CF60_RS17905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS17905 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS17905 PF01627 Hpt domain CF60_RS17905 PF00072 Response regulator receiver domain CF60_RS17905 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CF60_RS17910 PF13378 Enolase C-terminal domain-like CF60_RS17915 PF13378 Enolase C-terminal domain-like CF60_RS17915 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CF60_RS17920 PF07690 Major Facilitator Superfamily CF60_RS17925 PF00258 Flavodoxin CF60_RS17930 PF00849 RNA pseudouridylate synthase CF60_RS17935 PF04287 tRNA pseudouridine synthase C CF60_RS17945 PF07348 Syd protein (SUKH-2) CF60_RS17950 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CF60_RS17950 PF14489 QueF-like protein CF60_RS17955 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CF60_RS17955 PF11892 Domain of unknown function (DUF3412) CF60_RS17955 PF03641 Possible lysine decarboxylase CF60_RS17965 PF03315 Serine dehydratase beta chain CF60_RS17965 PF03313 Serine dehydratase alpha chain CF60_RS17970 PF01367 5'-3' exonuclease, C-terminal SAM fold CF60_RS17970 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CF60_RS17975 PF00465 Iron-containing alcohol dehydrogenase CF60_RS17980 PF00596 Class II Aldolase and Adducin N-terminal domain CF60_RS17985 PF07690 Major Facilitator Superfamily CF60_RS17990 PF07881 L-fucose isomerase, first N-terminal domain CF60_RS17990 PF07882 L-fucose isomerase, second N-terminal domain CF60_RS17990 PF02952 L-fucose isomerase, C-terminal domain CF60_RS17995 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CF60_RS17995 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CF60_RS18000 PF05025 RbsD / FucU transport protein family CF60_RS18005 PF08220 DeoR-like helix-turn-helix domain CF60_RS18005 PF00455 DeoR C terminal sensor domain CF60_RS18010 PF01728 FtsJ-like methyltransferase CF60_RS18010 PF18125 RlmM ferredoxin-like domain CF60_RS18015 PF04241 Protein of unknown function (DUF423) CF60_RS18020 PF03466 LysR substrate binding domain CF60_RS18020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS18025 PF06004 Bacterial protein of unknown function (DUF903) CF60_RS18030 PF00266 Aminotransferase class-V CF60_RS18035 PF02657 Fe-S metabolism associated domain CF60_RS18040 PF00899 ThiF family CF60_RS18045 PF03562 MltA specific insert domain CF60_RS18045 PF06725 3D domain CF60_RS18065 PF11741 AMIN domain CF60_RS18065 PF01520 N-acetylmuramoyl-L-alanine amidase CF60_RS18070 PF00696 Amino acid kinase family CF60_RS18070 PF00583 Acetyltransferase (GNAT) family CF60_RS18075 PF13538 UvrD-like helicase C-terminal domain CF60_RS18080 PF00580 UvrD/REP helicase N-terminal domain CF60_RS18080 PF12705 PD-(D/E)XK nuclease superfamily CF60_RS18080 PF13361 UvrD-like helicase C-terminal domain CF60_RS18085 PF00675 Insulinase (Peptidase family M16) CF60_RS18085 PF16187 Middle or third domain of peptidase_M16 CF60_RS18085 PF05193 Peptidase M16 inactive domain CF60_RS18090 PF17946 RecC C-terminal domain CF60_RS18095 PF07963 Prokaryotic N-terminal methylation motif CF60_RS18095 PF12528 Type II secretion prepilin peptidase dependent protein C CF60_RS18100 PF10713 Protein of unknown function (DUF2509) CF60_RS18105 PF07963 Prokaryotic N-terminal methylation motif CF60_RS18110 PF07963 Prokaryotic N-terminal methylation motif CF60_RS18115 PF00303 Thymidylate synthase CF60_RS18120 PF01790 Prolipoprotein diacylglyceryl transferase CF60_RS18125 PF02896 PEP-utilising enzyme, TIM barrel domain CF60_RS18125 PF00391 PEP-utilising enzyme, mobile domain CF60_RS18125 PF05524 PEP-utilising enzyme, N-terminal CF60_RS18125 PF01590 GAF domain CF60_RS18130 PF00293 NUDIX domain CF60_RS18145 PF02976 DNA mismatch repair enzyme MutH CF60_RS18150 PF03741 Integral membrane protein TerC family CF60_RS18155 PF06004 Bacterial protein of unknown function (DUF903) CF60_RS18160 PF00248 Aldo/keto reductase family CF60_RS18165 PF07690 Major Facilitator Superfamily CF60_RS18190 PF00356 Bacterial regulatory proteins, lacI family CF60_RS18195 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CF60_RS18195 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CF60_RS18200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS18200 PF03466 LysR substrate binding domain CF60_RS18205 PF01177 Asp/Glu/Hydantoin racemase CF60_RS18210 PF00083 Sugar (and other) transporter CF60_RS18220 PF04962 KduI/IolB family CF60_RS18225 PF02803 Thiolase, C-terminal domain CF60_RS18225 PF00108 Thiolase, N-terminal domain CF60_RS18230 PF03222 Tryptophan/tyrosine permease family CF60_RS18235 PF00196 Bacterial regulatory proteins, luxR family CF60_RS18240 PF00486 Transcriptional regulatory protein, C terminal CF60_RS18245 PF09480 Type III secretion system protein PrgH-EprH (PrgH) CF60_RS18265 PF02874 ATP synthase alpha/beta family, beta-barrel domain CF60_RS18265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CF60_RS18265 PF18269 T3SS EscN ATPase C-terminal domain CF60_RS18270 PF00771 FHIPEP family CF60_RS18280 PF03958 Bacterial type II/III secretion system short domain CF60_RS18280 PF00263 Bacterial type II and III secretion system protein CF60_RS18285 PF12833 Helix-turn-helix domain CF60_RS18305 PF01476 LysM domain CF60_RS18305 PF01551 Peptidase family M23 CF60_RS18310 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CF60_RS18310 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CF60_RS18315 PF00941 FAD binding domain in molybdopterin dehydrogenase CF60_RS18315 PF03450 CO dehydrogenase flavoprotein C-terminal domain CF60_RS18320 PF01799 [2Fe-2S] binding domain CF60_RS18320 PF00111 2Fe-2S iron-sulfur cluster binding domain CF60_RS18325 PF02954 Bacterial regulatory protein, Fis family CF60_RS18325 PF00158 Sigma-54 interaction domain CF60_RS18325 PF13188 PAS domain CF60_RS18330 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CF60_RS18330 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CF60_RS18335 PF00291 Pyridoxal-phosphate dependent enzyme CF60_RS18340 PF01546 Peptidase family M20/M25/M40 CF60_RS18340 PF07687 Peptidase dimerisation domain CF60_RS18345 PF01979 Amidohydrolase family CF60_RS18350 PF00696 Amino acid kinase family CF60_RS18355 PF13478 XdhC Rossmann domain CF60_RS18355 PF02625 XdhC and CoxI family CF60_RS18365 PF12804 MobA-like NTP transferase domain CF60_RS18370 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CF60_RS18370 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS18375 PF01979 Amidohydrolase family CF60_RS18380 PF00941 FAD binding domain in molybdopterin dehydrogenase CF60_RS18385 PF01799 [2Fe-2S] binding domain CF60_RS18385 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CF60_RS18385 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CF60_RS18390 PF00860 Permease family CF60_RS18395 PF01979 Amidohydrolase family CF60_RS18400 PF00860 Permease family CF60_RS18405 PF13247 4Fe-4S dicluster domain CF60_RS18410 PF13247 4Fe-4S dicluster domain CF60_RS18410 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS18410 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CF60_RS18420 PF00860 Permease family CF60_RS18430 PF00293 NUDIX domain CF60_RS18435 PF00152 tRNA synthetases class II (D, K and N) CF60_RS18435 PF01336 OB-fold nucleic acid binding domain CF60_RS18440 PF03462 PCRF domain CF60_RS18440 PF00472 RF-1 domain CF60_RS18445 PF02272 DHHA1 domain CF60_RS18445 PF17768 RecJ OB domain CF60_RS18445 PF01368 DHH family CF60_RS18450 PF13098 Thioredoxin-like domain CF60_RS18450 PF10411 Disulfide bond isomerase protein N-terminus CF60_RS18455 PF00589 Phage integrase family CF60_RS18455 PF02899 Phage integrase, N-terminal SAM-like domain CF60_RS18460 PF00258 Flavodoxin CF60_RS18465 PF07254 Membrane-bound toxin component of toxin-antitoxin system CF60_RS18470 PF03937 Flavinator of succinate dehydrogenase CF60_RS18475 PF01571 Aminomethyltransferase folate-binding domain CF60_RS18480 PF03006 Haemolysin-III related CF60_RS18485 PF04266 ASCH domain CF60_RS18490 PF00232 Glycosyl hydrolase family 1 CF60_RS18495 PF02347 Glycine cleavage system P-protein CF60_RS18500 PF01597 Glycine cleavage H-protein CF60_RS18505 PF01571 Aminomethyltransferase folate-binding domain CF60_RS18505 PF08669 Glycine cleavage T-protein C-terminal barrel domain CF60_RS18510 PF01494 FAD binding domain CF60_RS18515 PF01494 FAD binding domain CF60_RS18520 PF05195 Aminopeptidase P, N-terminal domain CF60_RS18520 PF00557 Metallopeptidase family M24 CF60_RS18525 PF03695 Uncharacterised protein family (UPF0149) CF60_RS18530 PF05164 Cell division protein ZapA CF60_RS18535 PF01812 5-formyltetrahydrofolate cyclo-ligase family CF60_RS18545 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CF60_RS18545 PF01842 ACT domain CF60_RS18545 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CF60_RS18550 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CF60_RS18555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS18555 PF03466 LysR substrate binding domain CF60_RS18560 PF01642 Methylmalonyl-CoA mutase CF60_RS18560 PF02310 B12 binding domain CF60_RS18575 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CF60_RS18575 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CF60_RS18580 PF03466 LysR substrate binding domain CF60_RS18580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS18585 PF04402 Protein of unknown function (DUF541) CF60_RS18590 PF01810 LysE type translocator CF60_RS18595 PF05552 Conserved TM helix CF60_RS18595 PF00924 Mechanosensitive ion channel CF60_RS18600 PF01116 Fructose-bisphosphate aldolase class-II CF60_RS18605 PF00162 Phosphoglycerate kinase CF60_RS18610 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CF60_RS18610 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CF60_RS18620 PF05068 Mannitol repressor CF60_RS18625 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CF60_RS18630 PF08240 Alcohol dehydrogenase GroES-like domain CF60_RS18630 PF00107 Zinc-binding dehydrogenase CF60_RS18635 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CF60_RS18635 PF02378 Phosphotransferase system, EIIC CF60_RS18640 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CF60_RS18645 PF01145 SPFH domain / Band 7 family CF60_RS18650 PF00456 Transketolase, thiamine diphosphate binding domain CF60_RS18650 PF02779 Transketolase, pyrimidine binding domain CF60_RS18650 PF02780 Transketolase, C-terminal domain CF60_RS18655 PF01435 Peptidase family M48 CF60_RS18670 PF13333 Integrase core domain CF60_RS18670 PF00665 Integrase core domain CF60_RS18670 PF13276 HTH-like domain CF60_RS18675 PF00491 Arginase family CF60_RS18685 PF17810 Arginine decarboxylase helical bundle domain CF60_RS18685 PF17944 Arginine decarboxylase C-terminal helical extension CF60_RS18685 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CF60_RS18690 PF11036 Virulence promoting factor CF60_RS18695 PF17430 Uncharacterized YqgC-like CF60_RS18705 PF00438 S-adenosylmethionine synthetase, N-terminal domain CF60_RS18705 PF02773 S-adenosylmethionine synthetase, C-terminal domain CF60_RS18705 PF02772 S-adenosylmethionine synthetase, central domain CF60_RS18710 PF00083 Sugar (and other) transporter CF60_RS18715 PF10263 SprT-like family CF60_RS18715 PF17283 SprT-like zinc ribbon domain CF60_RS18720 PF04231 Endonuclease I CF60_RS18725 PF04452 RNA methyltransferase CF60_RS18730 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CF60_RS18730 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CF60_RS18735 PF02622 Uncharacterized ACR, COG1678 CF60_RS18740 PF03652 Holliday junction resolvase CF60_RS18745 PF00437 Type II/IV secretion system protein CF60_RS18750 PF01168 Alanine racemase, N-terminal domain CF60_RS18755 PF02325 YGGT family CF60_RS18760 PF02594 Uncharacterised ACR, YggU family COG1872 CF60_RS18765 PF01725 Ham1 family CF60_RS18770 PF04055 Radical SAM superfamily CF60_RS18770 PF06969 HemN C-terminal domain CF60_RS18775 PF03480 Bacterial extracellular solute-binding protein, family 7 CF60_RS18780 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CF60_RS18785 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CF60_RS18790 PF06717 Protein of unknown function (DUF1202) CF60_RS18795 PF00710 Asparaginase, N-terminal CF60_RS18795 PF17763 Glutaminase/Asparaginase C-terminal domain CF60_RS18800 PF11101 Protein of unknown function (DUF2884) CF60_RS18810 PF04320 Protein with unknown function (DUF469) CF60_RS18815 PF02390 Putative methyltransferase CF60_RS18820 PF10576 Iron-sulfur binding domain of endonuclease III CF60_RS18820 PF00633 Helix-hairpin-helix motif CF60_RS18820 PF14815 NUDIX domain CF60_RS18820 PF00730 HhH-GPD superfamily base excision DNA repair protein CF60_RS18825 PF04362 Bacterial Fe(2+) trafficking CF60_RS18830 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CF60_RS18830 PF01464 Transglycosylase SLT domain CF60_RS18835 PF03825 Nucleoside H+ symporter CF60_RS18840 PF01276 Orn/Lys/Arg decarboxylase, major domain CF60_RS18840 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CF60_RS18840 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CF60_RS18845 PF04474 Protein of unknown function (DUF554) CF60_RS18860 PF01380 SIS domain CF60_RS18860 PF00571 CBS domain CF60_RS18875 PF02348 Cytidylyltransferase CF60_RS18880 PF05159 Capsule polysaccharide biosynthesis protein CF60_RS18885 PF05159 Capsule polysaccharide biosynthesis protein CF60_RS18890 PF01061 ABC-2 type transporter CF60_RS18895 PF04612 Type II secretion system (T2SS), protein M CF60_RS18900 PF12693 GspL periplasmic domain CF60_RS18905 PF03934 Type II secretion system (T2SS), protein K CF60_RS18910 PF07963 Prokaryotic N-terminal methylation motif CF60_RS18910 PF11612 Type II secretion system (T2SS), protein J CF60_RS18915 PF07963 Prokaryotic N-terminal methylation motif CF60_RS18915 PF02501 Type II secretion system (T2SS), protein I CF60_RS18920 PF07963 Prokaryotic N-terminal methylation motif CF60_RS18925 PF07963 Prokaryotic N-terminal methylation motif CF60_RS18925 PF08334 Type II secretion system (T2SS), protein G CF60_RS18930 PF00482 Type II secretion system (T2SS), protein F CF60_RS18935 PF00437 Type II/IV secretion system protein CF60_RS18940 PF00263 Bacterial type II and III secretion system protein CF60_RS18940 PF03958 Bacterial type II/III secretion system short domain CF60_RS18945 PF11356 Type II secretion system protein C CF60_RS18950 PF16549 Type II secretion system (T2SS) pilotin, S protein CF60_RS18955 PF06750 Bacterial Peptidase A24 N-terminal domain CF60_RS18955 PF01478 Type IV leader peptidase family CF60_RS18960 PF13322 Domain of unknown function (DUF4092) CF60_RS18960 PF17291 N-terminal domain of M60-like peptidases CF60_RS18960 PF13402 Peptidase M60, enhancin and enhancin-like CF60_RS18970 PF02652 L-lactate permease CF60_RS18975 PF01274 Malate synthase CF60_RS18980 PF03928 Haem-degrading CF60_RS18985 PF02754 Cysteine-rich domain CF60_RS18985 PF13183 4Fe-4S dicluster domain CF60_RS18990 PF01565 FAD binding domain CF60_RS18995 PF02913 FAD linked oxidases, C-terminal domain CF60_RS18995 PF01565 FAD binding domain CF60_RS19000 PF07729 FCD domain CF60_RS19000 PF00392 Bacterial regulatory proteins, gntR family CF60_RS19010 PF00501 AMP-binding enzyme CF60_RS19010 PF14535 AMP-binding enzyme C-terminal domain CF60_RS19020 PF00550 Phosphopantetheine attachment site CF60_RS19025 PF00155 Aminotransferase class I and II CF60_RS19035 PF03739 Lipopolysaccharide export system permease LptF/LptG CF60_RS19040 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CF60_RS19050 PF01943 Polysaccharide biosynthesis protein CF60_RS19070 PF01384 Phosphate transporter family CF60_RS19075 PF03738 Glutathionylspermidine synthase preATP-grasp CF60_RS19075 PF05257 CHAP domain CF60_RS19080 PF02798 Glutathione S-transferase, N-terminal domain CF60_RS19085 PF01455 HupF/HypC family CF60_RS19090 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CF60_RS19095 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CF60_RS19100 PF01750 Hydrogenase maturation protease CF60_RS19105 PF00374 Nickel-dependent hydrogenase CF60_RS19110 PF03916 Polysulphide reductase, NrfD CF60_RS19115 PF13247 4Fe-4S dicluster domain CF60_RS19120 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CF60_RS19120 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CF60_RS19130 PF11115 Protein of unknown function (DUF2623) CF60_RS19135 PF01738 Dienelactone hydrolase family CF60_RS19140 PF00248 Aldo/keto reductase family CF60_RS19145 PF03350 Uncharacterized protein family, UPF0114 CF60_RS19155 PF02472 Biopolymer transport protein ExbD/TolR CF60_RS19160 PF01618 MotA/TolQ/ExbB proton channel family CF60_RS19170 PF01053 Cys/Met metabolism PLP-dependent enzyme CF60_RS19175 PF09335 SNARE associated Golgi protein CF60_RS19180 PF12833 Helix-turn-helix domain CF60_RS19180 PF06719 AraC-type transcriptional regulator N-terminus CF60_RS19190 PF00465 Iron-containing alcohol dehydrogenase CF60_RS19195 PF00248 Aldo/keto reductase family CF60_RS19200 PF12883 Protein of unknown function (DUF3828) CF60_RS19205 PF04728 Lipoprotein leucine-zipper CF60_RS19210 PF11842 Domain of unknown function (DUF3362) CF60_RS19210 PF04055 Radical SAM superfamily CF60_RS19210 PF08497 Radical SAM N-terminal CF60_RS19215 PF07731 Multicopper oxidase CF60_RS19215 PF07732 Multicopper oxidase CF60_RS19215 PF00394 Multicopper oxidase CF60_RS19220 PF01553 Acyltransferase CF60_RS19225 PF00521 DNA gyrase/topoisomerase IV, subunit A CF60_RS19225 PF03989 DNA gyrase C-terminal domain, beta-propeller CF60_RS19230 PF06445 GyrI-like small molecule binding domain CF60_RS19235 PF04076 Bacterial OB fold (BOF) protein CF60_RS19240 PF00486 Transcriptional regulatory protein, C terminal CF60_RS19240 PF00072 Response regulator receiver domain CF60_RS19245 PF08521 Two-component sensor kinase N-terminal CF60_RS19245 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS19245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS19250 PF10840 Protein of unknown function (DUF2645) CF60_RS19265 PF02525 Flavodoxin-like fold CF60_RS19270 PF03992 Antibiotic biosynthesis monooxygenase CF60_RS19275 PF01418 Helix-turn-helix domain, rpiR family CF60_RS19275 PF01380 SIS domain CF60_RS19285 PF01032 FecCD transport family CF60_RS19290 PF01032 FecCD transport family CF60_RS19295 PF00005 ABC transporter CF60_RS19300 PF07715 TonB-dependent Receptor Plug Domain CF60_RS19305 PF01751 Toprim domain CF60_RS19305 PF00204 DNA gyrase B CF60_RS19305 PF00986 DNA gyrase B subunit, carboxyl terminus CF60_RS19305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS19310 PF05728 Uncharacterised protein family (UPF0227) CF60_RS19315 PF00149 Calcineurin-like phosphoesterase CF60_RS19320 PF06853 Protein of unknown function (DUF1249) CF60_RS19325 PF00293 NUDIX domain CF60_RS19330 PF02321 Outer membrane efflux protein CF60_RS19340 PF06693 Protein of unknown function (DUF1190) CF60_RS19345 PF03738 Glutathionylspermidine synthase preATP-grasp CF60_RS19350 PF17425 Arylsulfotransferase Ig-like domain CF60_RS19350 PF05935 Arylsulfotransferase (ASST) CF60_RS19355 PF01323 DSBA-like thioredoxin domain CF60_RS19365 PF13333 Integrase core domain CF60_RS19365 PF13276 HTH-like domain CF60_RS19365 PF00665 Integrase core domain CF60_RS19370 PF02600 Disulfide bond formation protein DsbB CF60_RS19375 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CF60_RS19380 PF02535 ZIP Zinc transporter CF60_RS19390 PF00419 Fimbrial protein CF60_RS19395 PF13954 PapC N-terminal domain CF60_RS19395 PF13953 PapC C-terminal domain CF60_RS19395 PF00577 Outer membrane usher protein CF60_RS19400 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CF60_RS19400 PF02753 Pili assembly chaperone PapD, C-terminal domain CF60_RS19405 PF00419 Fimbrial protein CF60_RS19410 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CF60_RS19420 PF08971 Glycogen synthesis protein CF60_RS19425 PF07290 Protein of unknown function (DUF1449) CF60_RS19430 PF15975 Flotillin CF60_RS19430 PF01145 SPFH domain / Band 7 family CF60_RS19440 PF01467 Cytidylyltransferase-like CF60_RS19440 PF00294 pfkB family carbohydrate kinase CF60_RS19445 PF03710 Glutamate-ammonia ligase adenylyltransferase CF60_RS19445 PF08335 GlnD PII-uridylyltransferase CF60_RS19450 PF01928 CYTH domain CF60_RS19460 PF08239 Bacterial SH3 domain CF60_RS19465 PF01743 Poly A polymerase head domain CF60_RS19465 PF01966 HD domain CF60_RS19465 PF12627 Probable RNA and SrmB- binding site of polymerase A CF60_RS19470 PF02673 Bacitracin resistance protein BacA CF60_RS19475 PF02152 Dihydroneopterin aldolase CF60_RS19480 PF02660 Glycerol-3-phosphate acyltransferase CF60_RS19485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS19485 PF03466 LysR substrate binding domain CF60_RS19490 PF05681 Fumarate hydratase (Fumerase) CF60_RS19495 PF05683 Fumarase C-terminus CF60_RS19500 PF00939 Sodium:sulfate symporter transmembrane region CF60_RS19505 PF00814 Glycoprotease family CF60_RS19510 PF01165 Ribosomal protein S21 CF60_RS19515 PF10410 DnaB-helicase binding domain of primase CF60_RS19515 PF08275 DNA primase catalytic core, N-terminal domain CF60_RS19515 PF01807 CHC2 zinc finger CF60_RS19515 PF08278 DNA primase DnaG DnaB-binding CF60_RS19520 PF04546 Sigma-70, non-essential region CF60_RS19520 PF04542 Sigma-70 region 2 CF60_RS19520 PF04539 Sigma-70 region 3 CF60_RS19520 PF03979 Sigma-70 factor, region 1.1 CF60_RS19520 PF04545 Sigma-70, region 4 CF60_RS19520 PF00140 Sigma-70 factor, region 1.2 CF60_RS19525 PF03167 Uracil DNA glycosylase superfamily CF60_RS19535 PF08021 Siderophore-interacting FAD-binding domain CF60_RS19535 PF04954 Siderophore-interacting protein CF60_RS19540 PF03551 Transcriptional regulator PadR-like family CF60_RS19545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CF60_RS19545 PF08447 PAS fold CF60_RS19550 PF00202 Aminotransferase class-III CF60_RS19555 PF01588 Putative tRNA binding domain CF60_RS19560 PF00356 Bacterial regulatory proteins, lacI family CF60_RS19565 PF16353 Domain of unknown function(DUF4981) CF60_RS19565 PF02929 Beta galactosidase small chain CF60_RS19565 PF02837 Glycosyl hydrolases family 2, sugar binding domain CF60_RS19565 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CF60_RS19565 PF00703 Glycosyl hydrolases family 2 CF60_RS19570 PF04074 YhcH/YjgK/YiaL CF60_RS19575 PF13520 Amino acid permease CF60_RS19585 PF01204 Trehalase CF60_RS19590 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS19590 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CF60_RS19595 PF01381 Helix-turn-helix CF60_RS19600 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system CF60_RS19610 PF05175 Methyltransferase small domain CF60_RS19615 PF01863 Protein of unknown function DUF45 CF60_RS19620 PF02698 DUF218 domain CF60_RS19625 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CF60_RS19630 PF03741 Integral membrane protein TerC family CF60_RS19635 PF00375 Sodium:dicarboxylate symporter family CF60_RS19640 PF10688 Bacterial inner membrane protein CF60_RS19645 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CF60_RS19645 PF08666 SAF domain CF60_RS19650 PF02614 Glucuronate isomerase CF60_RS19655 PF07690 Major Facilitator Superfamily CF60_RS19660 PF00392 Bacterial regulatory proteins, gntR family CF60_RS19660 PF07729 FCD domain CF60_RS19665 PF09335 SNARE associated Golgi protein CF60_RS19670 PF13721 SecD export protein N-terminal TM region CF60_RS19675 PF06476 Protein of unknown function (DUF1090) CF60_RS19680 PF05957 Bacterial protein of unknown function (DUF883) CF60_RS19685 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CF60_RS19690 PF13997 YqjK-like protein CF60_RS19695 PF07681 DoxX CF60_RS19700 PF13409 Glutathione S-transferase, N-terminal domain CF60_RS19705 PF01797 Transposase IS200 like CF60_RS19710 PF05656 Protein of unknown function (DUF805) CF60_RS19715 PF05656 Protein of unknown function (DUF805) CF60_RS19720 PF03466 LysR substrate binding domain CF60_RS19720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS19725 PF02678 Pirin CF60_RS19725 PF17954 Quercetinase C-terminal cupin domain CF60_RS19735 PF03313 Serine dehydratase alpha chain CF60_RS19745 PF03315 Serine dehydratase beta chain CF60_RS19745 PF03313 Serine dehydratase alpha chain CF60_RS19750 PF01042 Endoribonuclease L-PSP CF60_RS19755 PF01228 Glycine radical CF60_RS19755 PF02901 Pyruvate formate lyase-like CF60_RS19760 PF00871 Acetokinase family CF60_RS19765 PF03222 Tryptophan/tyrosine permease family CF60_RS19770 PF00291 Pyridoxal-phosphate dependent enzyme CF60_RS19775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS19775 PF03466 LysR substrate binding domain CF60_RS19800 PF02595 Glycerate kinase family CF60_RS19805 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CF60_RS19805 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CF60_RS19810 PF03328 HpcH/HpaI aldolase/citrate lyase family CF60_RS19815 PF07690 Major Facilitator Superfamily CF60_RS19820 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CF60_RS19820 PF08666 SAF domain CF60_RS19825 PF15937 prlF antitoxin for toxin YhaV_toxin CF60_RS19830 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system CF60_RS19835 PF08220 DeoR-like helix-turn-helix domain CF60_RS19835 PF00455 DeoR C terminal sensor domain CF60_RS19840 PF08013 Tagatose 6 phosphate kinase CF60_RS19845 PF03830 PTS system sorbose subfamily IIB component CF60_RS19850 PF03609 PTS system sorbose-specific iic component CF60_RS19855 PF03613 PTS system mannose/fructose/sorbose family IID component CF60_RS19860 PF03610 PTS system fructose IIA component CF60_RS19865 PF01979 Amidohydrolase family CF60_RS19870 PF01380 SIS domain CF60_RS19875 PF01116 Fructose-bisphosphate aldolase class-II CF60_RS19880 PF03830 PTS system sorbose subfamily IIB component CF60_RS19885 PF03609 PTS system sorbose-specific iic component CF60_RS19890 PF03613 PTS system mannose/fructose/sorbose family IID component CF60_RS19895 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CF60_RS19900 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CF60_RS19905 PF04348 LppC putative lipoprotein CF60_RS19910 PF02021 Uncharacterised protein family UPF0102 CF60_RS19915 PF13580 SIS domain CF60_RS19920 PF04972 BON domain CF60_RS19925 PF03773 Predicted permease CF60_RS19930 PF13460 NAD(P)H-binding CF60_RS19935 PF01965 DJ-1/PfpI family CF60_RS19945 PF01541 GIY-YIG catalytic domain CF60_RS19950 PF13508 Acetyltransferase (GNAT) domain CF60_RS19955 PF02036 SCP-2 sterol transfer family CF60_RS19960 PF01136 Peptidase family U32 CF60_RS19965 PF01136 Peptidase family U32 CF60_RS19970 PF00296 Luciferase-like monooxygenase CF60_RS19975 PF03222 Tryptophan/tyrosine permease family CF60_RS19985 PF00271 Helicase conserved C-terminal domain CF60_RS19985 PF12343 Cold shock protein DEAD box A CF60_RS19985 PF00270 DEAD/DEAH box helicase CF60_RS19985 PF03880 DbpA RNA binding domain CF60_RS19990 PF07719 Tetratricopeptide repeat CF60_RS19990 PF13181 Tetratricopeptide repeat CF60_RS19995 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CF60_RS19995 PF00575 S1 RNA binding domain CF60_RS19995 PF00013 KH domain CF60_RS19995 PF03725 3' exoribonuclease family, domain 2 CF60_RS19995 PF01138 3' exoribonuclease family, domain 1 CF60_RS20000 PF00312 Ribosomal protein S15 CF60_RS20005 PF09157 Pseudouridine synthase II TruB, C-terminal CF60_RS20005 PF01509 TruB family pseudouridylate synthase (N terminal domain) CF60_RS20005 PF16198 tRNA pseudouridylate synthase B C-terminal domain CF60_RS20010 PF02033 Ribosome-binding factor A CF60_RS20015 PF00009 Elongation factor Tu GTP binding domain CF60_RS20015 PF11987 Translation-initiation factor 2 CF60_RS20015 PF08364 Bacterial translation initiation factor IF-2 associated region CF60_RS20015 PF04760 Translation initiation factor IF-2, N-terminal region CF60_RS20020 PF08529 NusA N-terminal domain CF60_RS20020 PF13184 NusA-like KH domain CF60_RS20020 PF00575 S1 RNA binding domain CF60_RS20025 PF02576 RimP N-terminal domain CF60_RS20025 PF17384 RimP C-terminal SH3 domain CF60_RS20035 PF00764 Arginosuccinate synthase CF60_RS20040 PF00884 Sulfatase CF60_RS20050 PF03840 Preprotein translocase SecG subunit CF60_RS20055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CF60_RS20055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CF60_RS20055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CF60_RS20055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CF60_RS20060 PF00809 Pterin binding enzyme CF60_RS20065 PF01434 Peptidase family M41 CF60_RS20065 PF17862 AAA+ lid domain CF60_RS20065 PF06480 FtsH Extracellular CF60_RS20065 PF00004 ATPase family associated with various cellular activities (AAA) CF60_RS20070 PF01728 FtsJ-like methyltransferase CF60_RS20075 PF01985 CRS1 / YhbY (CRM) domain CF60_RS20080 PF03449 Transcription elongation factor, N-terminal CF60_RS20080 PF01272 Transcription elongation factor, GreA/GreB, C-term CF60_RS20085 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CF60_RS20090 PF01018 GTP1/OBG CF60_RS20090 PF01926 50S ribosome-binding GTPase CF60_RS20095 PF00892 EamA-like transporter family CF60_RS20100 PF01016 Ribosomal L27 protein CF60_RS20105 PF00829 Ribosomal prokaryotic L21 protein CF60_RS20110 PF00348 Polyprenyl synthetase CF60_RS20115 PF13693 Winged helix-turn-helix DNA-binding CF60_RS20120 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CF60_RS20125 PF01722 BolA-like protein CF60_RS20130 PF13466 STAS domain CF60_RS20135 PF05494 MlaC protein CF60_RS20140 PF02470 MlaD protein CF60_RS20145 PF02405 Permease MlaE CF60_RS20150 PF00005 ABC transporter CF60_RS20155 PF01699 Sodium/calcium exchanger protein CF60_RS20160 PF01380 SIS domain CF60_RS20160 PF00571 CBS domain CF60_RS20170 PF06835 Lipopolysaccharide-assembly, LptC-related CF60_RS20175 PF03968 OstA-like protein CF60_RS20180 PF12399 Branched-chain amino acid ATP-binding cassette transporter CF60_RS20180 PF00005 ABC transporter CF60_RS20185 PF00309 Sigma-54 factor, Activator interacting domain (AID) CF60_RS20185 PF04963 Sigma-54 factor, core binding domain CF60_RS20185 PF04552 Sigma-54, DNA binding domain CF60_RS20190 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CF60_RS20195 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CF60_RS20200 PF03668 P-loop ATPase protein family CF60_RS20205 PF00381 PTS HPr component phosphorylation site CF60_RS20210 PF10707 PhoP regulatory network protein YrbL CF60_RS20215 PF00912 Transglycosylase CF60_RS20225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS20225 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS20225 PF18415 Histidine kinase receptor ArcB trans-membrane domain CF60_RS20225 PF01627 Hpt domain CF60_RS20225 PF00989 PAS fold CF60_RS20225 PF00072 Response regulator receiver domain CF60_RS20230 PF16199 Radical_SAM C-terminal domain CF60_RS20230 PF04055 Radical SAM superfamily CF60_RS20235 PF01493 GXGXG motif CF60_RS20235 PF00310 Glutamine amidotransferases class-II CF60_RS20235 PF04898 Glutamate synthase central domain CF60_RS20235 PF01645 Conserved region in glutamate synthase CF60_RS20240 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CF60_RS20240 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS20245 PF17761 DUF1016 N-terminal domain CF60_RS20245 PF06250 YhcG PDDEXK nuclease domain CF60_RS20250 PF04074 YhcH/YjgK/YiaL CF60_RS20255 PF00480 ROK family CF60_RS20260 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CF60_RS20265 PF07690 Major Facilitator Superfamily CF60_RS20270 PF00701 Dihydrodipicolinate synthetase family CF60_RS20275 PF07729 FCD domain CF60_RS20275 PF00392 Bacterial regulatory proteins, gntR family CF60_RS20280 PF03606 C4-dicarboxylate anaerobic carrier CF60_RS20285 PF04386 Stringent starvation protein B CF60_RS20290 PF00043 Glutathione S-transferase, C-terminal domain CF60_RS20290 PF02798 Glutathione S-transferase, N-terminal domain CF60_RS20295 PF00380 Ribosomal protein S9/S16 CF60_RS20300 PF00572 Ribosomal protein L13 CF60_RS20305 PF03969 AFG1-like ATPase CF60_RS20310 PF06295 Protein of unknown function (DUF1043) CF60_RS20315 PF13180 PDZ domain CF60_RS20315 PF00595 PDZ domain CF60_RS20320 PF13180 PDZ domain CF60_RS20325 PF00056 lactate/malate dehydrogenase, NAD binding domain CF60_RS20325 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CF60_RS20330 PF01316 Arginine repressor, DNA binding domain CF60_RS20330 PF02863 Arginine repressor, C-terminal domain CF60_RS20335 PF07338 Protein of unknown function (DUF1471) CF60_RS20340 PF01337 Barstar (barnase inhibitor) CF60_RS20345 PF04632 Fusaric acid resistance protein family CF60_RS20350 PF13533 Biotin-lipoyl like CF60_RS20355 PF07869 Protein of unknown function (DUF1656) CF60_RS20360 PF03466 LysR substrate binding domain CF60_RS20360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS20365 PF01523 Putative modulator of DNA gyrase CF60_RS20370 PF13502 AsmA-like C-terminal region CF60_RS20370 PF13116 Protein of unknown function CF60_RS20375 PF00575 S1 RNA binding domain CF60_RS20375 PF10150 Ribonuclease E/G family CF60_RS20380 PF02545 Maf-like protein CF60_RS20385 PF04093 rod shape-determining protein MreD CF60_RS20390 PF04085 rod shape-determining protein MreC CF60_RS20405 PF17157 Gammaproteobacterial periplasmic sensor domain CF60_RS20405 PF00563 EAL domain CF60_RS20405 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS20410 PF08240 Alcohol dehydrogenase GroES-like domain CF60_RS20410 PF00107 Zinc-binding dehydrogenase CF60_RS20425 PF01794 Ferric reductase like transmembrane component CF60_RS20430 PF00364 Biotin-requiring enzyme CF60_RS20435 PF00289 Biotin carboxylase, N-terminal domain CF60_RS20435 PF02785 Biotin carboxylase C-terminal domain CF60_RS20435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CF60_RS20440 PF06196 Protein of unknown function (DUF997) CF60_RS20445 PF00474 Sodium:solute symporter family CF60_RS20455 PF01207 Dihydrouridine synthase (Dus) CF60_RS20460 PF02954 Bacterial regulatory protein, Fis family CF60_RS20465 PF01555 DNA methylase CF60_RS20470 PF10831 Protein of unknown function (DUF2556) CF60_RS20475 PF08361 MAATS-type transcriptional repressor, C-terminal region CF60_RS20475 PF00440 Bacterial regulatory proteins, tetR family CF60_RS20480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CF60_RS20480 PF00529 HlyD membrane-fusion protein of T1SS CF60_RS20505 PF00497 Bacterial extracellular solute-binding proteins, family 3 CF60_RS20510 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS20515 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS20520 PF00005 ABC transporter CF60_RS20565 PF00132 Bacterial transferase hexapeptide (six repeats) CF60_RS20570 PF07369 Protein of unknown function (DUF1488) CF60_RS20610 PF02080 TrkA-C domain CF60_RS20610 PF02254 TrkA-N domain CF60_RS20620 PF01741 Large-conductance mechanosensitive channel, MscL CF60_RS20630 PF13411 MerR HTH family regulatory protein CF60_RS20645 PF08501 Shikimate dehydrogenase substrate binding domain CF60_RS20645 PF01488 Shikimate / quinate 5-dehydrogenase CF60_RS20645 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CF60_RS20650 PF01300 Telomere recombination CF60_RS20655 PF01396 Topoisomerase DNA binding C4 zinc finger CF60_RS20660 PF04361 Protein of unknown function (DUF494) CF60_RS20665 PF17782 DprA winged helix domain CF60_RS20665 PF02481 DNA recombination-mediator protein A CF60_RS20670 PF01327 Polypeptide deformylase CF60_RS20675 PF00551 Formyl transferase CF60_RS20675 PF02911 Formyl transferase, C-terminal domain CF60_RS20680 PF01029 NusB family CF60_RS20680 PF01189 16S rRNA methyltransferase RsmB/F CF60_RS20685 PF02254 TrkA-N domain CF60_RS20685 PF02080 TrkA-C domain CF60_RS20690 PF01741 Large-conductance mechanosensitive channel, MscL CF60_RS20695 PF03889 Alternative ribosome-rescue factor A CF60_RS20700 PF13411 MerR HTH family regulatory protein CF60_RS20705 PF09350 Domain of unknown function (DUF1992) CF60_RS20710 PF01196 Ribosomal protein L17 CF60_RS20715 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CF60_RS20715 PF01000 RNA polymerase Rpb3/RpoA insert domain CF60_RS20715 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CF60_RS20720 PF00163 Ribosomal protein S4/S9 N-terminal domain CF60_RS20720 PF01479 S4 domain CF60_RS20725 PF00411 Ribosomal protein S11 CF60_RS20730 PF00416 Ribosomal protein S13/S18 CF60_RS20735 PF00444 Ribosomal protein L36 CF60_RS20740 PF00344 SecY translocase CF60_RS20745 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CF60_RS20750 PF00327 Ribosomal protein L30p/L7e CF60_RS20755 PF03719 Ribosomal protein S5, C-terminal domain CF60_RS20755 PF00333 Ribosomal protein S5, N-terminal domain CF60_RS20760 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CF60_RS20765 PF00347 Ribosomal protein L6 CF60_RS20770 PF00410 Ribosomal protein S8 CF60_RS20775 PF00253 Ribosomal protein S14p/S29e CF60_RS20780 PF00673 ribosomal L5P family C-terminus CF60_RS20780 PF00281 Ribosomal protein L5 CF60_RS20785 PF00467 KOW motif CF60_RS20785 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CF60_RS20790 PF00238 Ribosomal protein L14p/L23e CF60_RS20795 PF00366 Ribosomal protein S17 CF60_RS20800 PF00831 Ribosomal L29 protein CF60_RS20805 PF00252 Ribosomal protein L16p/L10e CF60_RS20810 PF07650 KH domain CF60_RS20810 PF00189 Ribosomal protein S3, C-terminal domain CF60_RS20815 PF00237 Ribosomal protein L22p/L17e CF60_RS20820 PF00203 Ribosomal protein S19 CF60_RS20825 PF03947 Ribosomal Proteins L2, C-terminal domain CF60_RS20825 PF00181 Ribosomal Proteins L2, RNA binding domain CF60_RS20830 PF00276 Ribosomal protein L23 CF60_RS20835 PF00573 Ribosomal protein L4/L1 family CF60_RS20840 PF00297 Ribosomal protein L3 CF60_RS20845 PF00338 Ribosomal protein S10p/S20e CF60_RS20855 PF01478 Type IV leader peptidase family CF60_RS20860 PF00210 Ferritin-like domain CF60_RS20865 PF04324 BFD-like [2Fe-2S] binding domain CF60_RS20870 PF00009 Elongation factor Tu GTP binding domain CF60_RS20870 PF03143 Elongation factor Tu C-terminal domain CF60_RS20870 PF03144 Elongation factor Tu domain 2 CF60_RS20875 PF00679 Elongation factor G C-terminus CF60_RS20875 PF03144 Elongation factor Tu domain 2 CF60_RS20875 PF03764 Elongation factor G, domain IV CF60_RS20875 PF00009 Elongation factor Tu GTP binding domain CF60_RS20875 PF14492 Elongation Factor G, domain II CF60_RS20880 PF00177 Ribosomal protein S7p/S5e CF60_RS20885 PF00164 Ribosomal protein S12/S23 CF60_RS20890 PF04077 DsrH like protein CF60_RS20895 PF02635 DsrE/DsrF-like family CF60_RS20900 PF02635 DsrE/DsrF-like family CF60_RS20905 PF13309 HTH domain CF60_RS20905 PF08348 YheO-like PAS domain CF60_RS20910 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CF60_RS20910 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CF60_RS20915 PF04102 SlyX CF60_RS20920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CF60_RS20925 PF09526 Probable metal-binding protein (DUF2387) CF60_RS20930 PF00999 Sodium/hydrogen exchanger family CF60_RS20930 PF02254 TrkA-N domain CF60_RS20935 PF02525 Flavodoxin-like fold CF60_RS20940 PF00005 ABC transporter CF60_RS20940 PF12848 ABC transporter CF60_RS20945 PF00561 alpha/beta hydrolase fold CF60_RS20950 PF06794 Uncharacterised protein family (UPF0270) CF60_RS20955 PF00485 Phosphoribulokinase / Uridine kinase family CF60_RS20960 PF02566 OsmC-like protein CF60_RS20970 PF00027 Cyclic nucleotide-binding domain CF60_RS20970 PF13545 Crp-like helix-turn-helix domain CF60_RS20975 PF12805 FUSC-like inner membrane protein yccS CF60_RS20980 PF00202 Aminotransferase class-III CF60_RS20985 PF00117 Glutamine amidotransferase class-I CF60_RS20990 PF02661 Fic/DOC family CF60_RS20995 PF10832 Protein of unknown function (DUF2559) CF60_RS21000 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CF60_RS21005 PF07690 Major Facilitator Superfamily CF60_RS21010 PF18267 Rubredoxin NAD+ reductase C-terminal domain CF60_RS21010 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CF60_RS21010 PF04324 BFD-like [2Fe-2S] binding domain CF60_RS21010 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CF60_RS21010 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS21015 PF13806 Rieske-like [2Fe-2S] domain CF60_RS21020 PF01226 Formate/nitrite transporter CF60_RS21025 PF14824 Sirohaem biosynthesis protein central CF60_RS21025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CF60_RS21025 PF10414 Sirohaem synthase dimerisation region CF60_RS21030 PF13978 Protein of unknown function (DUF4223) CF60_RS21035 PF00155 Aminotransferase class I and II CF60_RS21040 PF10797 Protein of unknown function CF60_RS21045 PF10941 Protein of unknown function DUF2620 CF60_RS21050 PF02126 Phosphotriesterase family CF60_RS21055 PF01676 Metalloenzyme superfamily CF60_RS21060 PF01168 Alanine racemase, N-terminal domain CF60_RS21070 PF14502 Helix-turn-helix domain CF60_RS21070 PF14503 YhfZ C-terminal domain CF60_RS21075 PF00579 tRNA synthetases class I (W and Y) CF60_RS21080 PF13419 Haloacid dehalogenase-like hydrolase CF60_RS21085 PF00834 Ribulose-phosphate 3 epimerase family CF60_RS21090 PF02086 D12 class N6 adenine-specific DNA methyltransferase CF60_RS21095 PF05036 Sporulation related domain CF60_RS21100 PF01761 3-dehydroquinate synthase CF60_RS21105 PF01202 Shikimate kinase CF60_RS21110 PF03958 Bacterial type II/III secretion system short domain CF60_RS21110 PF00263 Bacterial type II and III secretion system protein CF60_RS21115 PF10748 DNA utilization proteins HofP CF60_RS21125 PF05137 Fimbrial assembly protein (PilN) CF60_RS21135 PF00912 Transglycosylase CF60_RS21135 PF00905 Penicillin binding protein transpeptidase domain CF60_RS21135 PF17092 Penicillin-binding protein OB-like domain CF60_RS21140 PF00293 NUDIX domain CF60_RS21145 PF07095 Intracellular growth attenuator protein IgaA CF60_RS21150 PF13419 Haloacid dehalogenase-like hydrolase CF60_RS21155 PF01479 S4 domain CF60_RS21160 PF01430 Hsp33 protein CF60_RS21165 PF13687 Domain of unknown function (DUF4153) CF60_RS21175 PF01293 Phosphoenolpyruvate carboxykinase CF60_RS21180 PF00672 HAMP domain CF60_RS21180 PF00512 His Kinase A (phospho-acceptor) domain CF60_RS21180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS21185 PF00072 Response regulator receiver domain CF60_RS21185 PF00486 Transcriptional regulatory protein, C terminal CF60_RS21190 PF03449 Transcription elongation factor, N-terminal CF60_RS21190 PF01272 Transcription elongation factor, GreA/GreB, C-term CF60_RS21195 PF16921 Tex protein YqgF-like domain CF60_RS21195 PF17674 HHH domain CF60_RS21195 PF09371 Tex-like protein N-terminal domain CF60_RS21195 PF00575 S1 RNA binding domain CF60_RS21200 PF04023 FeoA domain CF60_RS21205 PF07670 Nucleoside recognition CF60_RS21205 PF17910 FeoB cytosolic helical domain CF60_RS21205 PF07664 Ferrous iron transport protein B C terminus CF60_RS21205 PF02421 Ferrous iron transport protein B CF60_RS21210 PF09012 FeoC like transcriptional regulator CF60_RS21215 PF04754 Putative transposase, YhgA-like CF60_RS21220 PF00561 alpha/beta hydrolase fold CF60_RS21225 PF00156 Phosphoribosyl transferase domain CF60_RS21230 PF01106 NifU-like domain CF60_RS21230 PF01521 Iron-sulphur cluster biosynthesis CF60_RS21240 PF02446 4-alpha-glucanotransferase CF60_RS21245 PF00343 Carbohydrate phosphorylase CF60_RS21250 PF00196 Bacterial regulatory proteins, luxR family CF60_RS21250 PF17874 MalT-like TPR region CF60_RS21255 PF01137 RNA 3'-terminal phosphate cyclase CF60_RS21255 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain CF60_RS21260 PF01139 tRNA-splicing ligase RtcB CF60_RS21265 PF00158 Sigma-54 interaction domain CF60_RS21265 PF06956 Regulator of RNA terminal phosphate cyclase CF60_RS21270 PF08220 DeoR-like helix-turn-helix domain CF60_RS21270 PF00455 DeoR C terminal sensor domain CF60_RS21275 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CF60_RS21275 PF01694 Rhomboid family CF60_RS21280 PF00581 Rhodanese-like domain CF60_RS21285 PF01266 FAD dependent oxidoreductase CF60_RS21285 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CF60_RS21310 PF00419 Fimbrial protein CF60_RS21315 PF13954 PapC N-terminal domain CF60_RS21315 PF13953 PapC C-terminal domain CF60_RS21315 PF00577 Outer membrane usher protein CF60_RS21320 PF02753 Pili assembly chaperone PapD, C-terminal domain CF60_RS21320 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CF60_RS21330 PF00343 Carbohydrate phosphorylase CF60_RS21335 PF08323 Starch synthase catalytic domain CF60_RS21335 PF00534 Glycosyl transferases group 1 CF60_RS21340 PF00483 Nucleotidyl transferase CF60_RS21345 PF00128 Alpha amylase, catalytic domain CF60_RS21345 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CF60_RS21345 PF18390 Glycogen debranching enzyme C-terminal domain CF60_RS21350 PF00128 Alpha amylase, catalytic domain CF60_RS21350 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CF60_RS21350 PF02806 Alpha amylase, C-terminal all-beta domain CF60_RS21355 PF02774 Semialdehyde dehydrogenase, dimerisation domain CF60_RS21355 PF01118 Semialdehyde dehydrogenase, NAD binding domain CF60_RS21360 PF01914 MarC family integral membrane protein CF60_RS21365 PF02447 GntP family permease CF60_RS21370 PF01202 Shikimate kinase CF60_RS21375 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CF60_RS21375 PF00356 Bacterial regulatory proteins, lacI family CF60_RS21380 PF17954 Quercetinase C-terminal cupin domain CF60_RS21380 PF02678 Pirin CF60_RS21385 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CF60_RS21385 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CF60_RS21395 PF00583 Acetyltransferase (GNAT) family CF60_RS21400 PF05638 Type VI secretion system effector, Hcp CF60_RS21410 PF15567 Immunity protein 35 CF60_RS21420 PF10956 Protein of unknown function (DUF2756) CF60_RS21425 PF03009 Glycerophosphoryl diester phosphodiesterase family CF60_RS21430 PF00005 ABC transporter CF60_RS21430 PF17912 MalK OB fold domain CF60_RS21435 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS21440 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS21445 PF13416 Bacterial extracellular solute-binding protein CF60_RS21455 PF00005 ABC transporter CF60_RS21460 PF00005 ABC transporter CF60_RS21460 PF12399 Branched-chain amino acid ATP-binding cassette transporter CF60_RS21465 PF11862 Domain of unknown function (DUF3382) CF60_RS21465 PF02653 Branched-chain amino acid transport system / permease component CF60_RS21470 PF02653 Branched-chain amino acid transport system / permease component CF60_RS21475 PF13458 Periplasmic binding protein CF60_RS21480 PF12568 Acetyltransferase (GNAT) domain, PanZ CF60_RS21490 PF13458 Periplasmic binding protein CF60_RS21495 PF04545 Sigma-70, region 4 CF60_RS21495 PF04542 Sigma-70 region 2 CF60_RS21500 PF18075 FtsX extracellular domain CF60_RS21500 PF02687 FtsX-like permease family CF60_RS21505 PF00005 ABC transporter CF60_RS21510 PF00448 SRP54-type protein, GTPase domain CF60_RS21510 PF02881 SRP54-type protein, helical bundle domain CF60_RS21520 PF06611 Protein of unknown function (DUF1145) CF60_RS21525 PF10694 Protein of unknown function (DUF2500) CF60_RS21530 PF07947 YhhN family CF60_RS21535 PF00403 Heavy-metal-associated domain CF60_RS21540 PF01206 Sulfurtransferase TusA CF60_RS21545 PF02592 Putative vitamin uptake transporter CF60_RS21550 PF08786 DcrB CF60_RS21555 PF07690 Major Facilitator Superfamily CF60_RS21560 PF01594 AI-2E family transporter CF60_RS21565 PF01648 4'-phosphopantetheinyl transferase superfamily CF60_RS21570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF60_RS21575 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS21580 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS21585 PF00005 ABC transporter CF60_RS21590 PF00005 ABC transporter CF60_RS21595 PF01402 Ribbon-helix-helix protein, copG family CF60_RS21595 PF08753 NikR C terminal nickel binding domain CF60_RS21600 PF05593 RHS Repeat CF60_RS21600 PF03527 RHS protein CF60_RS21620 PF14220 Domain of unknown function (DUF4329) CF60_RS21620 PF05593 RHS Repeat CF60_RS21620 PF03527 RHS protein CF60_RS21625 PF15631 NTF2 fold immunity protein CF60_RS21630 PF03130 PBS lyase HEAT-like repeat CF60_RS21635 PF03527 RHS protein CF60_RS21645 PF01609 Transposase DDE domain CF60_RS21645 PF13808 DDE_Tnp_1-associated CF60_RS21655 PF00005 ABC transporter CF60_RS21660 PF13533 Biotin-lipoyl like CF60_RS21665 PF13258 Domain of unknown function (DUF4049) CF60_RS21670 PF13258 Domain of unknown function (DUF4049) CF60_RS21685 PF10951 Protein of unknown function (DUF2776) CF60_RS21695 PF01384 Phosphate transporter family CF60_RS21700 PF10625 Universal stress protein B (UspB) CF60_RS21705 PF00582 Universal stress protein family CF60_RS21710 PF00854 POT family CF60_RS21715 PF04445 Putative SAM-dependent methyltransferase CF60_RS21720 PF01432 Peptidase family M3 CF60_RS21725 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CF60_RS21730 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CF60_RS21730 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF60_RS21745 PF01022 Bacterial regulatory protein, arsR family CF60_RS21750 PF02040 Arsenical pump membrane protein CF60_RS21755 PF03960 ArsC family CF60_RS21775 PF03843 Outer membrane lipoprotein Slp family CF60_RS21780 PF00196 Bacterial regulatory proteins, luxR family CF60_RS21785 PF05171 Haemin-degrading HemS.ChuX domain CF60_RS21790 PF00593 TonB dependent receptor CF60_RS21790 PF07715 TonB-dependent Receptor Plug Domain CF60_RS21795 PF01497 Periplasmic binding protein CF60_RS21800 PF04055 Radical SAM superfamily CF60_RS21805 PF06228 Haem utilisation ChuX/HutX CF60_RS21815 PF01032 FecCD transport family CF60_RS21820 PF00005 ABC transporter CF60_RS21825 PF02308 MgtC family CF60_RS21830 PF06411 HdeA/HdeB family CF60_RS21835 PF06411 HdeA/HdeB family CF60_RS21840 PF03729 Short repeat of unknown function (DUF308) CF60_RS21845 PF00196 Bacterial regulatory proteins, luxR family CF60_RS21855 PF00529 HlyD membrane-fusion protein of T1SS CF60_RS21855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CF60_RS21860 PF00873 AcrB/AcrD/AcrF family CF60_RS21865 PF12833 Helix-turn-helix domain CF60_RS21870 PF12833 Helix-turn-helix domain CF60_RS21875 PF00282 Pyridoxal-dependent decarboxylase conserved domain CF60_RS21880 PF14376 Haem-binding domain CF60_RS21880 PF00034 Cytochrome c CF60_RS21880 PF03150 Di-haem cytochrome c peroxidase CF60_RS21885 PF01204 Trehalase CF60_RS21890 PF00196 Bacterial regulatory proteins, luxR family CF60_RS21895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS21895 PF03466 LysR substrate binding domain CF60_RS21900 PF03631 Virulence factor BrkB CF60_RS21905 PF00083 Sugar (and other) transporter CF60_RS21905 PF07690 Major Facilitator Superfamily CF60_RS21910 PF05170 AsmA family CF60_RS21915 PF00563 EAL domain CF60_RS21925 PF00294 pfkB family carbohydrate kinase CF60_RS21930 PF05193 Peptidase M16 inactive domain CF60_RS21930 PF00675 Insulinase (Peptidase family M16) CF60_RS21935 PF00375 Sodium:dicarboxylate symporter family CF60_RS21940 PF00563 EAL domain CF60_RS21940 PF00990 Diguanylate cyclase, GGDEF domain CF60_RS21940 PF00672 HAMP domain CF60_RS21940 PF17154 Gammaproteobacterial periplasmic sensor domain CF60_RS21945 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CF60_RS21950 PF01270 Glycosyl hydrolases family 8 CF60_RS21955 PF03170 Bacterial cellulose synthase subunit CF60_RS21960 PF03552 Cellulose synthase CF60_RS21960 PF00535 Glycosyl transferase family 2 CF60_RS21960 PF07238 PilZ domain CF60_RS21965 PF06564 Cellulose biosynthesis protein BcsQ CF60_RS21970 PF10945 Cellulose biosynthesis protein BcsR CF60_RS21975 PF10995 Cellulose biosynthesis GIL CF60_RS21980 PF11120 Cellulose biosynthesis protein BcsF CF60_RS21985 PF11658 Cellulose biosynthesis protein BcsG CF60_RS21990 PF13940 Toxin Ldr, type I toxin-antitoxin system CF60_RS22005 PF03222 Tryptophan/tyrosine permease family CF60_RS22010 PF00005 ABC transporter CF60_RS22010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CF60_RS22015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CF60_RS22015 PF00005 ABC transporter CF60_RS22020 PF12911 N-terminal TM domain of oligopeptide transport permease C CF60_RS22020 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS22025 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS22035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF60_RS22050 PF08019 Phosphoethanolamine transferase EptA/EptB CF60_RS22050 PF00884 Sulfatase CF60_RS22055 PF07690 Major Facilitator Superfamily CF60_RS22060 PF03797 Autotransporter beta-domain CF60_RS22065 PF03352 Methyladenine glycosylase CF60_RS22070 PF00583 Acetyltransferase (GNAT) family CF60_RS22075 PF18364 Molybdopterin oxidoreductase N-terminal domain CF60_RS22075 PF01568 Molydopterin dinucleotide binding domain CF60_RS22075 PF00384 Molybdopterin oxidoreductase CF60_RS22080 PF13488 Glycine zipper CF60_RS22080 PF00691 OmpA family CF60_RS22085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CF60_RS22085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CF60_RS22090 PF11254 Protein of unknown function (DUF3053) CF60_RS22095 PF01381 Helix-turn-helix CF60_RS22100 PF00313 'Cold-shock' DNA-binding domain CF60_RS22105 PF01848 Hok/gef family CF60_RS22110 PF13276 HTH-like domain CF60_RS22110 PF13333 Integrase core domain CF60_RS22110 PF00665 Integrase core domain CF60_RS22120 PF05746 DALR anticodon binding domain CF60_RS22120 PF02092 Glycyl-tRNA synthetase beta subunit CF60_RS22125 PF02091 Glycyl-tRNA synthetase alpha subunit CF60_RS22130 PF13983 YsaB-like lipoprotein CF60_RS22135 PF01757 Acyltransferase family CF60_RS22140 PF05360 yiaA/B two helix domain CF60_RS22145 PF05360 yiaA/B two helix domain CF60_RS22150 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CF60_RS22150 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CF60_RS22160 PF13407 Periplasmic binding protein domain CF60_RS22165 PF00005 ABC transporter CF60_RS22170 PF02653 Branched-chain amino acid transport system / permease component CF60_RS22175 PF12833 Helix-turn-helix domain CF60_RS22180 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CF60_RS22185 PF00128 Alpha amylase, catalytic domain CF60_RS22190 PF00155 Aminotransferase class I and II CF60_RS22200 PF13247 4Fe-4S dicluster domain CF60_RS22205 PF09339 IclR helix-turn-helix domain CF60_RS22205 PF01614 Bacterial transcriptional regulator CF60_RS22210 PF02615 Malate/L-lactate dehydrogenase CF60_RS22215 PF04074 YhcH/YjgK/YiaL CF60_RS22220 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CF60_RS22225 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CF60_RS22230 PF03480 Bacterial extracellular solute-binding protein, family 7 CF60_RS22235 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CF60_RS22235 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CF60_RS22240 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CF60_RS22245 PF01261 Xylose isomerase-like TIM barrel CF60_RS22250 PF00596 Class II Aldolase and Adducin N-terminal domain CF60_RS22265 PF07944 Beta-L-arabinofuranosidase, GH127 CF60_RS22290 PF00171 Aldehyde dehydrogenase family CF60_RS22300 PF00465 Iron-containing alcohol dehydrogenase CF60_RS22305 PF09107 Elongation factor SelB, winged helix CF60_RS22305 PF09106 Elongation factor SelB, winged helix CF60_RS22305 PF03144 Elongation factor Tu domain 2 CF60_RS22305 PF00009 Elongation factor Tu GTP binding domain CF60_RS22310 PF12390 Selenocysteine synthase N terminal CF60_RS22310 PF03841 L-seryl-tRNA selenium transferase CF60_RS22315 PF13417 Glutathione S-transferase, N-terminal domain CF60_RS22315 PF00043 Glutathione S-transferase, C-terminal domain CF60_RS22320 PF03841 L-seryl-tRNA selenium transferase CF60_RS22320 PF12390 Selenocysteine synthase N terminal CF60_RS22325 PF13417 Glutathione S-transferase, N-terminal domain CF60_RS22325 PF00043 Glutathione S-transferase, C-terminal domain CF60_RS22345 PF15596 Immunity protein 57 CF60_RS22350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CF60_RS22350 PF00529 HlyD membrane-fusion protein of T1SS CF60_RS22355 PF11742 Protein of unknown function (DUF3302) CF60_RS22360 PF02378 Phosphotransferase system, EIIC CF60_RS22360 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CF60_RS22360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CF60_RS22365 PF08125 Mannitol dehydrogenase C-terminal domain CF60_RS22365 PF01232 Mannitol dehydrogenase Rossmann domain CF60_RS22370 PF05068 Mannitol repressor CF60_RS22380 PF10928 Protein of unknown function (DUF2810) CF60_RS22385 PF11622 Protein of unknown function (DUF3251) CF60_RS22390 PF05658 Head domain of trimeric autotransporter adhesin CF60_RS22390 PF13018 Extended Signal Peptide of Type V secretion system CF60_RS22390 PF05662 Coiled stalk of trimeric autotransporter adhesin CF60_RS22390 PF03895 YadA-like membrane anchor domain CF60_RS22395 PF02652 L-lactate permease CF60_RS22400 PF00392 Bacterial regulatory proteins, gntR family CF60_RS22400 PF07729 FCD domain CF60_RS22405 PF01070 FMN-dependent dehydrogenase CF60_RS22410 PF00588 SpoU rRNA Methylase family CF60_RS22415 PF06426 Serine acetyltransferase, N-terminal CF60_RS22415 PF00132 Bacterial transferase hexapeptide (six repeats) CF60_RS22420 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CF60_RS22420 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CF60_RS22425 PF02556 Preprotein translocase subunit SecB CF60_RS22430 PF00462 Glutaredoxin CF60_RS22435 PF00581 Rhodanese-like domain CF60_RS22445 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CF60_RS22445 PF01676 Metalloenzyme superfamily CF60_RS22450 PF01551 Peptidase family M23 CF60_RS22455 PF04748 Divergent polysaccharide deacetylase CF60_RS22460 PF00535 Glycosyl transferase family 2 CF60_RS22465 PF00107 Zinc-binding dehydrogenase CF60_RS22465 PF08240 Alcohol dehydrogenase GroES-like domain CF60_RS22470 PF00155 Aminotransferase class I and II CF60_RS22475 PF01370 NAD dependent epimerase/dehydratase family CF60_RS22480 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CF60_RS22485 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CF60_RS22510 PF08437 Glycosyl transferase family 8 C-terminal CF60_RS22510 PF01501 Glycosyl transferase family 8 CF60_RS22515 PF08437 Glycosyl transferase family 8 C-terminal CF60_RS22515 PF01501 Glycosyl transferase family 8 CF60_RS22525 PF00534 Glycosyl transferases group 1 CF60_RS22525 PF13439 Glycosyltransferase Family 4 CF60_RS22530 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CF60_RS22535 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CF60_RS22540 PF01467 Cytidylyltransferase-like CF60_RS22545 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CF60_RS22545 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CF60_RS22545 PF06827 Zinc finger found in FPG and IleRS CF60_RS22550 PF00471 Ribosomal protein L33 CF60_RS22555 PF00830 Ribosomal L28 family CF60_RS22560 PF04002 RadC-like JAB domain CF60_RS22565 PF04127 DNA / pantothenate metabolism flavoprotein CF60_RS22565 PF02441 Flavoprotein CF60_RS22570 PF00692 dUTPase CF60_RS22575 PF00440 Bacterial regulatory proteins, tetR family CF60_RS22580 PF00156 Phosphoribosyl transferase domain CF60_RS22585 PF01138 3' exoribonuclease family, domain 1 CF60_RS22585 PF03725 3' exoribonuclease family, domain 2 CF60_RS22590 PF03755 YicC-like family, N-terminal region CF60_RS22590 PF08340 Domain of unknown function (DUF1732) CF60_RS22605 PF03120 NAD-dependent DNA ligase OB-fold domain CF60_RS22605 PF01653 NAD-dependent DNA ligase adenylation domain CF60_RS22610 PF00625 Guanylate kinase CF60_RS22615 PF01192 RNA polymerase Rpb6 CF60_RS22620 PF13291 ACT domain CF60_RS22620 PF04607 Region found in RelA / SpoT proteins CF60_RS22620 PF02824 TGS domain CF60_RS22625 PF12105 SpoU, rRNA methylase, C-terminal CF60_RS22625 PF00588 SpoU rRNA Methylase family CF60_RS22630 PF17191 RecG wedge domain CF60_RS22630 PF00271 Helicase conserved C-terminal domain CF60_RS22630 PF00270 DEAD/DEAH box helicase CF60_RS22640 PF03616 Sodium/glutamate symporter CF60_RS22645 PF00860 Permease family CF60_RS22650 PF05170 AsmA family CF60_RS22655 PF01055 Glycosyl hydrolases family 31 CF60_RS22655 PF13802 Galactose mutarotase-like CF60_RS22670 PF13356 Arm DNA-binding domain CF60_RS22670 PF14659 Phage integrase, N-terminal SAM-like domain CF60_RS22670 PF00589 Phage integrase family CF60_RS22740 PF07690 Major Facilitator Superfamily CF60_RS22745 PF00892 EamA-like transporter family CF60_RS22750 PF03180 NLPA lipoprotein CF60_RS22765 PF07690 Major Facilitator Superfamily CF60_RS22770 PF06711 Protein of unknown function (DUF1198) CF60_RS22775 PF00860 Permease family CF60_RS22780 PF01979 Amidohydrolase family CF60_RS22780 PF13382 Adenine deaminase C-terminal domain CF60_RS22785 PF07690 Major Facilitator Superfamily CF60_RS22790 PF07690 Major Facilitator Superfamily CF60_RS22795 PF05231 MASE1 CF60_RS22795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS22795 PF07730 Histidine kinase CF60_RS22800 PF00196 Bacterial regulatory proteins, luxR family CF60_RS22800 PF00072 Response regulator receiver domain CF60_RS22820 PF01842 ACT domain CF60_RS22825 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CF60_RS22825 PF00205 Thiamine pyrophosphate enzyme, central domain CF60_RS22825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CF60_RS22830 PF08049 IlvB leader peptide CF60_RS22845 PF13939 Toxin TisB, type I toxin-antitoxin system CF60_RS22850 PF07690 Major Facilitator Superfamily CF60_RS22860 PF02656 Domain of unknown function (DUF202) CF60_RS22865 PF02656 Domain of unknown function (DUF202) CF60_RS22870 PF16347 Domain of unknown function (DUF4976) CF60_RS22870 PF00884 Sulfatase CF60_RS22875 PF00474 Sodium:solute symporter family CF60_RS22880 PF12833 Helix-turn-helix domain CF60_RS22880 PF02311 AraC-like ligand binding domain CF60_RS22885 PF02056 Family 4 glycosyl hydrolase CF60_RS22885 PF11975 Family 4 glycosyl hydrolase C-terminal domain CF60_RS22890 PF00367 phosphotransferase system, EIIB CF60_RS22890 PF02378 Phosphotransferase system, EIIC CF60_RS22895 PF00392 Bacterial regulatory proteins, gntR family CF60_RS22895 PF07702 UTRA domain CF60_RS22900 PF06826 Predicted Permease Membrane Region CF60_RS22900 PF02080 TrkA-C domain CF60_RS22910 PF00011 Hsp20/alpha crystallin family CF60_RS22915 PF00011 Hsp20/alpha crystallin family CF60_RS22920 PF07119 Protein of unknown function (DUF1375) CF60_RS22925 PF12566 Protein of unknown function (DUF3748) CF60_RS22925 PF07676 WD40-like Beta Propeller Repeat CF60_RS22930 PF01494 FAD binding domain CF60_RS22935 PF07690 Major Facilitator Superfamily CF60_RS22940 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CF60_RS22940 PF13378 Enolase C-terminal domain-like CF60_RS22945 PF01081 KDPG and KHG aldolase CF60_RS22950 PF05035 2-keto-3-deoxy-galactonokinase CF60_RS22955 PF00392 Bacterial regulatory proteins, gntR family CF60_RS22955 PF07729 FCD domain CF60_RS22970 PF06078 Bacterial protein of unknown function (DUF937) CF60_RS22975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF60_RS22975 PF01751 Toprim domain CF60_RS22975 PF00204 DNA gyrase B CF60_RS22975 PF00986 DNA gyrase B subunit, carboxyl terminus CF60_RS22975 PF18053 DNA gyrase B subunit insert domain CF60_RS22980 PF02463 RecF/RecN/SMC N terminal domain CF60_RS22985 PF02768 DNA polymerase III beta subunit, C-terminal domain CF60_RS22985 PF02767 DNA polymerase III beta subunit, central domain CF60_RS22985 PF00712 DNA polymerase III beta subunit, N-terminal domain CF60_RS22990 PF11638 DnaA N-terminal domain CF60_RS22990 PF08299 Bacterial dnaA protein helix-turn-helix CF60_RS22990 PF00308 Bacterial dnaA protein CF60_RS22995 PF00468 Ribosomal protein L34 CF60_RS23000 PF00825 Ribonuclease P CF60_RS23005 PF01809 Putative membrane protein insertion efficiency factor CF60_RS23010 PF14849 YidC periplasmic domain CF60_RS23010 PF02096 60Kd inner membrane protein CF60_RS23015 PF01926 50S ribosome-binding GTPase CF60_RS23015 PF10396 GTP-binding protein TrmE N-terminus CF60_RS23015 PF12631 MnmE helical domain CF60_RS23025 PF08053 Tryptophanase operon leader peptide CF60_RS23030 PF01212 Beta-eliminating lyase CF60_RS23035 PF03222 Tryptophan/tyrosine permease family CF60_RS23040 PF07690 Major Facilitator Superfamily CF60_RS23045 PF03466 LysR substrate binding domain CF60_RS23045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS23055 PF03358 NADPH-dependent FMN reductase CF60_RS23060 PF00860 Permease family CF60_RS23065 PF13419 Haloacid dehalogenase-like hydrolase CF60_RS23085 PF01895 PhoU domain CF60_RS23090 PF00005 ABC transporter CF60_RS23095 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS23100 PF00528 Binding-protein-dependent transport system inner membrane component CF60_RS23105 PF12849 PBP superfamily domain CF60_RS23115 PF13954 PapC N-terminal domain CF60_RS23115 PF13953 PapC C-terminal domain CF60_RS23115 PF00577 Outer membrane usher protein CF60_RS23120 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CF60_RS23120 PF02753 Pili assembly chaperone PapD, C-terminal domain CF60_RS23125 PF00419 Fimbrial protein CF60_RS23130 PF01380 SIS domain CF60_RS23135 PF12804 MobA-like NTP transferase domain CF60_RS23135 PF14602 Hexapeptide repeat of succinyl-transferase CF60_RS23135 PF00132 Bacterial transferase hexapeptide (six repeats) CF60_RS23140 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CF60_RS23140 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CF60_RS23145 PF02874 ATP synthase alpha/beta family, beta-barrel domain CF60_RS23145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CF60_RS23150 PF00231 ATP synthase CF60_RS23155 PF00306 ATP synthase alpha/beta chain, C terminal domain CF60_RS23155 PF02874 ATP synthase alpha/beta family, beta-barrel domain CF60_RS23155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CF60_RS23160 PF00213 ATP synthase delta (OSCP) subunit CF60_RS23165 PF00430 ATP synthase B/B' CF(0) CF60_RS23170 PF00137 ATP synthase subunit C CF60_RS23175 PF00119 ATP synthase A chain CF60_RS23180 PF03899 ATP synthase I chain CF60_RS23185 PF02527 rRNA small subunit methyltransferase G CF60_RS23190 PF13932 GidA associated domain CF60_RS23190 PF01134 Glucose inhibited division protein A CF60_RS23195 PF00258 Flavodoxin CF60_RS23200 PF01037 Lrp/AsnC ligand binding domain CF60_RS23205 PF03590 Aspartate-ammonia ligase CF60_RS23210 PF05762 VWA domain containing CoxE-like protein CF60_RS23215 PF12592 Protein of unknown function (DUF3763) CF60_RS23215 PF17868 AAA lid domain CF60_RS23215 PF07728 AAA domain (dynein-related subfamily) CF60_RS23220 PF02705 K+ potassium transporter CF60_RS23225 PF05025 RbsD / FucU transport protein family CF60_RS23230 PF00005 ABC transporter CF60_RS23235 PF02653 Branched-chain amino acid transport system / permease component CF60_RS23240 PF13407 Periplasmic binding protein domain CF60_RS23245 PF00294 pfkB family carbohydrate kinase CF60_RS23255 PF07690 Major Facilitator Superfamily CF60_RS23260 PF07729 FCD domain CF60_RS23260 PF00392 Bacterial regulatory proteins, gntR family CF60_RS23305 PF03466 LysR substrate binding domain CF60_RS23305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS23310 PF04219 Protein of unknown function, DUF CF60_RS23315 PF01078 Magnesium chelatase, subunit ChlI CF60_RS23315 PF13335 Magnesium chelatase, subunit ChlI C-terminal CF60_RS23320 PF08046 IlvGEDA operon leader peptide CF60_RS23325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CF60_RS23325 PF00205 Thiamine pyrophosphate enzyme, central domain CF60_RS23325 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CF60_RS23335 PF01063 Amino-transferase class IV CF60_RS23340 PF00920 Dehydratase family CF60_RS23345 PF00585 C-terminal regulatory domain of Threonine dehydratase CF60_RS23345 PF00291 Pyridoxal-phosphate dependent enzyme CF60_RS23350 PF03466 LysR substrate binding domain CF60_RS23350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS23355 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CF60_RS23355 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CF60_RS23365 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CF60_RS23370 PF00580 UvrD/REP helicase N-terminal domain CF60_RS23370 PF13361 UvrD-like helicase C-terminal domain CF60_RS23375 PF02541 Ppx/GppA phosphatase family CF60_RS23380 PF00270 DEAD/DEAH box helicase CF60_RS23380 PF00271 Helicase conserved C-terminal domain CF60_RS23385 PF00085 Thioredoxin CF60_RS23395 PF07497 Rho termination factor, RNA-binding domain CF60_RS23395 PF07498 Rho termination factor, N-terminal domain CF60_RS23395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CF60_RS23400 PF01797 Transposase IS200 like CF60_RS23410 PF00953 Glycosyl transferase family 4 CF60_RS23415 PF02706 Chain length determinant protein CF60_RS23420 PF02350 UDP-N-acetylglucosamine 2-epimerase CF60_RS23425 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CF60_RS23425 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CF60_RS23425 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CF60_RS23435 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CF60_RS23440 PF01943 Polysaccharide biosynthesis protein CF60_RS23445 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CF60_RS23450 PF06899 WzyE protein, O-antigen assembly polymerase CF60_RS23455 PF03808 Glycosyl transferase WecB/TagA/CpsF family CF60_RS23460 PF00324 Amino acid permease CF60_RS23485 PF04055 Radical SAM superfamily CF60_RS23485 PF13186 Iron-sulfur cluster-binding domain CF60_RS23490 PF00884 Sulfatase CF60_RS23495 PF07719 Tetratricopeptide repeat CF60_RS23495 PF07219 HemY protein N-terminus CF60_RS23500 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CF60_RS23510 PF03900 Porphobilinogen deaminase, C-terminal domain CF60_RS23510 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CF60_RS23520 PF02602 Uroporphyrinogen-III synthase HemD CF60_RS23525 PF03900 Porphobilinogen deaminase, C-terminal domain CF60_RS23525 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CF60_RS23530 PF01295 Adenylate cyclase, class-I CF60_RS23530 PF12633 Adenylate cyclase NT domain CF60_RS23535 PF01491 Frataxin-like domain CF60_RS23540 PF13627 Prokaryotic lipoprotein-attachment site CF60_RS23545 PF01678 Diaminopimelate epimerase CF60_RS23550 PF04340 Protein of unknown function, DUF484 CF60_RS23555 PF02899 Phage integrase, N-terminal SAM-like domain CF60_RS23555 PF00589 Phage integrase family CF60_RS23560 PF13419 Haloacid dehalogenase-like hydrolase CF60_RS23565 PF13361 UvrD-like helicase C-terminal domain CF60_RS23565 PF00580 UvrD/REP helicase N-terminal domain CF60_RS23570 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase CF60_RS23575 PF09992 Phosphodiester glycosidase CF60_RS23585 PF01544 CorA-like Mg2+ transporter protein CF60_RS23600 PF00892 EamA-like transporter family CF60_RS23605 PF03061 Thioesterase superfamily CF60_RS23610 PF02253 Phospholipase A1 CF60_RS23615 PF00271 Helicase conserved C-terminal domain CF60_RS23615 PF00570 HRDC domain CF60_RS23615 PF09382 RQC domain CF60_RS23615 PF16124 RecQ zinc-binding CF60_RS23615 PF00270 DEAD/DEAH box helicase CF60_RS23620 PF01810 LysE type translocator CF60_RS23625 PF01810 LysE type translocator CF60_RS23630 PF12146 Serine aminopeptidase, S33 CF60_RS23640 PF00892 EamA-like transporter family CF60_RS23645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF60_RS23645 PF03466 LysR substrate binding domain CF60_RS23650 PF01717 Cobalamin-independent synthase, Catalytic domain CF60_RS23650 PF08267 Cobalamin-independent synthase, N-terminal domain CF60_RS23665 PF05638 Type VI secretion system effector, Hcp CF60_RS23670 PF01738 Dienelactone hydrolase family CF60_RS23675 PF01048 Phosphorylase superfamily CF60_RS23680 PF02646 RmuC family CF60_RS23685 PF01209 ubiE/COQ5 methyltransferase family CF60_RS23690 PF02036 SCP-2 sterol transfer family CF60_RS23695 PF03109 ABC1 family CF60_RS23700 PF02416 mttA/Hcf106 family CF60_RS23710 PF00902 Sec-independent protein translocase protein (TatC) CF60_RS23715 PF01026 TatD related DNase CF60_RS23720 PF02357 Transcription termination factor nusG CF60_RS23725 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CF60_RS23730 PF00175 Oxidoreductase NAD-binding domain CF60_RS23730 PF00970 Oxidoreductase FAD-binding domain CF60_RS23735 PF02803 Thiolase, C-terminal domain CF60_RS23735 PF00108 Thiolase, N-terminal domain CF60_RS23740 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CF60_RS23740 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CF60_RS23740 PF00378 Enoyl-CoA hydratase/isomerase CF60_RS23745 PF00557 Metallopeptidase family M24 CF60_RS23750 PF01205 Uncharacterized protein family UPF0029 CF60_RS23750 PF09186 Domain of unknown function (DUF1949) CF60_RS23755 PF02386 Cation transport protein CF60_RS23760 PF12724 Flavodoxin domain CF60_RS23800 PF06290 Plasmid SOS inhibition protein (PsiB) CF60_RS23805 PF02195 ParB-like nuclease domain CF60_RS23810 PF06006 Bacterial protein of unknown function (DUF905) CF60_RS23815 PF00436 Single-strand binding protein family CF60_RS23830 PF07128 Protein of unknown function (DUF1380) CF60_RS23835 PF03230 Antirestriction protein CF60_RS23850 PF07128 Protein of unknown function (DUF1380) CF60_RS23860 PF01555 DNA methylase CF60_RS23870 PF06924 Protein of unknown function (DUF1281) CF60_RS23875 PF06183 DinI-like family CF60_RS23880 PF00717 Peptidase S24-like CF60_RS23885 PF11799 impB/mucB/samB family C-terminal domain CF60_RS23885 PF13438 Domain of unknown function (DUF4113) CF60_RS23885 PF00817 impB/mucB/samB family CF60_RS23895 PF06406 StbA protein CF60_RS23900 PF10609 NUBPL iron-transfer P-loop NTPase CF60_RS23910 PF00589 Phage integrase family CF60_RS23935 PF03605 Anaerobic c4-dicarboxylate membrane transporter CF60_RS23945 PF00465 Iron-containing alcohol dehydrogenase CF60_RS23955 PF00294 pfkB family carbohydrate kinase CF60_RS23960 PF08244 Glycosyl hydrolases family 32 C terminal CF60_RS23960 PF00251 Glycosyl hydrolases family 32 N-terminal domain CF60_RS23965 PF01306 LacY proton/sugar symporter CF60_RS23970 PF16874 Glycosyl hydrolase family 36 C-terminal domain CF60_RS23970 PF16875 Glycosyl hydrolase family 36 N-terminal domain CF60_RS23975 PF00356 Bacterial regulatory proteins, lacI family CF60_RS23975 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CF60_RS23995 PF00267 Gram-negative porin CF60_RS24000 PF12833 Helix-turn-helix domain CF60_RS24020 PF06069 PerC transcriptional activator CF60_RS24030 PF13276 HTH-like domain CF60_RS24030 PF13683 Integrase core domain CF60_RS24035 PF01695 IstB-like ATP binding protein CF60_RS24045 PF03797 Autotransporter beta-domain CF60_RS24060 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CF60_RS24075 PF02387 IncFII RepA protein family CF60_RS24090 PF12833 Helix-turn-helix domain CF60_RS24090 PF06445 GyrI-like small molecule binding domain CF60_RS24155 PF00437 Type II/IV secretion system protein CF60_RS24170 PF01464 Transglycosylase SLT domain CF60_RS24180 PF04917 Bacterial shufflon protein, N-terminal constant region CF60_RS24185 PF00106 short chain dehydrogenase CF60_RS24210 PF00696 Amino acid kinase family CF60_RS24210 PF01842 ACT domain CF60_RS24220 PF01479 S4 domain CF60_RS24220 PF00849 RNA pseudouridylate synthase CF60_RS24225 PF13936 Helix-turn-helix domain CF60_RS24225 PF04198 Putative sugar-binding domain CF60_RS24230 PF00106 short chain dehydrogenase CF60_RS24255 PF04754 Putative transposase, YhgA-like CF60_RS24290 PF03432 Relaxase/Mobilisation nuclease domain CF60_RS24300 PF00436 Single-strand binding protein family CF60_RS24305 PF01055 Glycosyl hydrolases family 31 CF60_RS24305 PF16338 Domain of unknown function (DUF4968) CF60_RS24305 PF17137 Domain of unknown function (DUF5110) CF60_RS24305 PF13802 Galactose mutarotase-like CF60_RS24310 PF07690 Major Facilitator Superfamily CF60_RS24315 PF00356 Bacterial regulatory proteins, lacI family CF60_RS24335 PF01848 Hok/gef family CF60_RS24390 PF01850 PIN domain CF60_RS24410 PF13091 PLD-like domain CF60_RS24450 PF13362 Toprim domain CF60_RS24450 PF18818 Metallopeptidase superfamily domain CF60_RS24450 PF08401 Domain of unknown function (DUF1738) CF60_RS24460 PF00437 Type II/IV secretion system protein CF60_RS24490 PF00005 ABC transporter CF60_RS24505 PF13333 Integrase core domain CF60_RS24505 PF13276 HTH-like domain CF60_RS24505 PF00665 Integrase core domain CF60_RS24555 PF01278 Omptin family CF60_RS24560 PF12833 Helix-turn-helix domain CF60_RS24565 PF14488 Domain of unknown function (DUF4434) CF60_RS24590 PF02779 Transketolase, pyrimidine binding domain CF60_RS24590 PF16870 2-oxoglutarate dehydrogenase C-terminal CF60_RS24590 PF00676 Dehydrogenase E1 component CF60_RS24590 PF16078 2-oxoglutarate dehydrogenase N-terminus CF60_RS24600 PF13085 2Fe-2S iron-sulfur cluster binding domain CF60_RS24665 PF17345 Family of unknown function (DUF5375) CF60_RS24675 PF07690 Major Facilitator Superfamily CF60_RS24685 PF03180 NLPA lipoprotein CF60_RS24700 PF07690 Major Facilitator Superfamily CF60_RS24705 PF06711 Protein of unknown function (DUF1198) CF60_RS24810 PF05593 RHS Repeat CF60_RS24810 PF03527 RHS protein CF60_RS24815 PF01609 Transposase DDE domain CF60_RS24815 PF13808 DDE_Tnp_1-associated CF60_RS24865 PF07151 Protein of unknown function (DUF1391) CF60_RS24870 PF06791 Prophage tail length tape measure protein CF60_RS24915 PF10662 Ethanolamine utilisation - propanediol utilisation CF60_RS24925 PF07719 Tetratricopeptide repeat CF60_RS24925 PF07219 HemY protein N-terminus CF60_RS24945 PF12833 Helix-turn-helix domain CF60_RS24955 PF00696 Amino acid kinase family CF60_RS24955 PF01842 ACT domain