CF60_RS00075 SM00563 Phosphate acyltransferases CF60_RS00100 SM00729 Elongator protein 3, MiaB family, Radical SAM CF60_RS00110 SM00382 ATPases associated with a variety of cellular activities CF60_RS00110 SM00448 cheY-homologous receiver domain CF60_RS00115 SM00091 PAS domain CF60_RS00115 SM00387 Histidine kinase-like ATPases CF60_RS00115 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS00120 SM01230 CF60_RS00120 CF60_RS00135 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS00135 SM00866 CF60_RS00135 CF60_RS00185 SM01133 CF60_RS00185 CF60_RS00200 SM00420 helix_turn_helix, Deoxyribose operon repressor CF60_RS00200 SM01134 CF60_RS00200 CF60_RS00260 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS00305 SM01007 Class II Aldolase and Adducin N-terminal domain CF60_RS00325 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS00330 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS00375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CF60_RS00375 SM00387 Histidine kinase-like ATPases CF60_RS00375 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS00380 SM00448 cheY-homologous receiver domain CF60_RS00380 SM00862 Transcriptional regulatory protein, C terminal CF60_RS00470 SM00382 ATPases associated with a variety of cellular activities CF60_RS00470 SM01086 C-terminal, D2-small domain, of ClpB protein CF60_RS00485 SM00354 helix_turn _helix lactose operon repressor CF60_RS00490 SM00487 DEAD-like helicases superfamily CF60_RS00490 SM00490 helicase superfamily c-terminal domain CF60_RS00640 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS00660 SM00859 Semialdehyde dehydrogenase, NAD binding domain CF60_RS00785 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CF60_RS00785 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CF60_RS00790 SM00649 Ribosomal protein L11/L12 CF60_RS00815 SM00663 RNA polymerase I subunit A N-terminus CF60_RS00820 SM00876 Biotin and Thiamin Synthesis associated domain CF60_RS00875 SM00411 bacterial (prokaryotic) histone like domain CF60_RS00890 SM00387 Histidine kinase-like ATPases CF60_RS00890 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS00895 SM00382 ATPases associated with a variety of cellular activities CF60_RS00895 SM00448 cheY-homologous receiver domain CF60_RS00900 SM01209 CF60_RS00900 CF60_RS00900 SM01210 CF60_RS00900 CF60_RS00905 SM00798 AICARFT/IMPCHase bienzyme CF60_RS00905 SM00851 MGS-like domain CF60_RS00960 SM00248 ankyrin repeats CF60_RS00965 SM00346 helix_turn_helix isocitrate lyase regulation CF60_RS00970 SM01018 B12 binding domain CF60_RS01025 SM00822 CF60_RS01025 CF60_RS01035 SM00363 S4 RNA-binding domain CF60_RS01115 SM00382 ATPases associated with a variety of cellular activities CF60_RS01145 SM00563 Phosphate acyltransferases CF60_RS01195 SM00829 Enoylreductase CF60_RS01200 SM00382 ATPases associated with a variety of cellular activities CF60_RS01205 SM01005 Alanine racemase, C-terminal domain CF60_RS01250 SM00052 Putative diguanylate phosphodiesterase CF60_RS01255 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS01260 SM00422 helix_turn_helix, mercury resistance CF60_RS01325 SM00028 Tetratricopeptide repeats CF60_RS01335 SM00671 Sel1-like repeats. CF60_RS01345 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS01370 SM00849 Metallo-beta-lactamase superfamily CF60_RS01390 SM00382 ATPases associated with a variety of cellular activities CF60_RS01425 SM00072 Guanylate kinase homologues. CF60_RS01435 SM00382 ATPases associated with a variety of cellular activities CF60_RS01440 SM00382 ATPases associated with a variety of cellular activities CF60_RS01465 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS01465 SM00866 CF60_RS01465 CF60_RS01480 SM00382 ATPases associated with a variety of cellular activities CF60_RS01515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CF60_RS01515 SM00387 Histidine kinase-like ATPases CF60_RS01515 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS01520 SM00448 cheY-homologous receiver domain CF60_RS01520 SM00862 Transcriptional regulatory protein, C terminal CF60_RS01535 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS01545 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS01590 SM00448 cheY-homologous receiver domain CF60_RS01595 SM00091 PAS domain CF60_RS01595 SM00387 Histidine kinase-like ATPases CF60_RS01640 SM00862 Transcriptional regulatory protein, C terminal CF60_RS01685 SM00883 Chaperonin 10 Kd subunit CF60_RS01710 SM00841 Elongation factor P, C-terminal CF60_RS01710 SM01185 CF60_RS01710 CF60_RS01785 SM00479 CF60_RS01785 CF60_RS01820 SM00646 CF60_RS01820 CF60_RS01825 SM00853 MutL C terminal dimerisation domain CF60_RS01825 SM01340 CF60_RS01825 CF60_RS01845 SM00244 prohibitin homologues CF60_RS01850 SM00244 prohibitin homologues CF60_RS01860 SM00788 Adenylosuccinate synthetase CF60_RS01870 SM00316 Ribosomal protein S1-like RNA-binding domain CF60_RS01870 SM00357 Cold shock protein domain CF60_RS01870 SM00955 CF60_RS01870 CF60_RS01875 SM00967 RNA 2'-O ribose methyltransferase substrate binding CF60_RS01930 SM00420 helix_turn_helix, Deoxyribose operon repressor CF60_RS01930 SM01134 CF60_RS01930 CF60_RS01955 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CF60_RS01965 SM01007 Class II Aldolase and Adducin N-terminal domain CF60_RS02065 SM01091 Transporter associated domain CF60_RS02095 SM00966 SpoVT / AbrB like domain CF60_RS02115 SM00382 ATPases associated with a variety of cellular activities CF60_RS02180 SM00642 Alpha-amylase domain CF60_RS02195 SM00354 helix_turn _helix lactose operon repressor CF60_RS02200 SM00831 Cation transporter/ATPase, N-terminus CF60_RS02235 SM00822 CF60_RS02235 CF60_RS02305 SM00829 Enoylreductase CF60_RS02375 SM00487 DEAD-like helicases superfamily CF60_RS02375 SM00490 helicase superfamily c-terminal domain CF60_RS02510 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS02510 SM00895 CF60_RS02510 CF60_RS02605 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS02635 SM00487 DEAD-like helicases superfamily CF60_RS02650 SM00833 Cobalamin synthesis protein cobW C-terminal domain CF60_RS02670 SM00903 Flavin reductase like domain CF60_RS02680 SM00849 Metallo-beta-lactamase superfamily CF60_RS02685 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS02725 SM00347 helix_turn_helix multiple antibiotic resistance protein CF60_RS02730 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CF60_RS02730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CF60_RS02730 SM00319 Homologues of the ligand binding domain of Tar CF60_RS02740 SM00895 CF60_RS02740 CF60_RS02745 SM00829 Enoylreductase CF60_RS02760 SM00382 ATPases associated with a variety of cellular activities CF60_RS02780 SM00421 helix_turn_helix, Lux Regulon CF60_RS02785 SM00421 helix_turn_helix, Lux Regulon CF60_RS02845 SM00749 bacterial OsmY and nodulation domain CF60_RS02880 SM01133 CF60_RS02880 CF60_RS02885 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CF60_RS02900 SM00530 Helix-turn-helix XRE-family like proteins CF60_RS02920 SM00382 ATPases associated with a variety of cellular activities CF60_RS02925 SM00530 Helix-turn-helix XRE-family like proteins CF60_RS02975 SM00382 ATPases associated with a variety of cellular activities CF60_RS02995 SM00855 Phosphoglycerate mutase family CF60_RS03000 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS03000 SM00871 Bacterial transcription activator, effector binding domain CF60_RS03010 SM00448 cheY-homologous receiver domain CF60_RS03010 SM00862 Transcriptional regulatory protein, C terminal CF60_RS03015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CF60_RS03015 SM00387 Histidine kinase-like ATPases CF60_RS03015 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS03025 SM00448 cheY-homologous receiver domain CF60_RS03025 SM00862 Transcriptional regulatory protein, C terminal CF60_RS03085 SM00852 Probable molybdopterin binding domain CF60_RS03110 SM00271 DnaJ molecular chaperone homology domain CF60_RS03180 SM00904 Riboflavin kinase CF60_RS03230 SM00851 MGS-like domain CF60_RS03230 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CF60_RS03275 SM00893 Electron transfer flavoprotein domain CF60_RS03280 SM00893 Electron transfer flavoprotein domain CF60_RS03325 SM00650 Ribosomal RNA adenine dimethylases CF60_RS03345 SM00271 DnaJ molecular chaperone homology domain CF60_RS03360 SM00487 DEAD-like helicases superfamily CF60_RS03360 SM00490 helicase superfamily c-terminal domain CF60_RS03365 SM00486 DNA polymerase type-B family CF60_RS03370 SM01007 Class II Aldolase and Adducin N-terminal domain CF60_RS03385 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS03395 SM00382 ATPases associated with a variety of cellular activities CF60_RS03435 SM01329 CF60_RS03435 CF60_RS03440 SM00917 LeuA allosteric (dimerisation) domain CF60_RS03470 SM00354 helix_turn _helix lactose operon repressor CF60_RS03540 SM00842 Cell division protein FtsA CF60_RS03545 SM00864 Tubulin/FtsZ family, GTPase domain CF60_RS03545 SM00865 Tubulin/FtsZ family, C-terminal domain CF60_RS03590 SM01240 CF60_RS03590 CF60_RS03620 SM00644 CF60_RS03620 CF60_RS03635 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS03635 SM00895 CF60_RS03635 CF60_RS03690 SM00564 beta-propeller repeat CF60_RS03700 SM00947 Carbonic anhydrase CF60_RS03705 SM00382 ATPases associated with a variety of cellular activities CF60_RS03810 SM00487 DEAD-like helicases superfamily CF60_RS03810 SM00490 helicase superfamily c-terminal domain CF60_RS03810 SM00847 Helicase associated domain (HA2) Add an annotation CF60_RS03825 SM00382 ATPases associated with a variety of cellular activities CF60_RS03870 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CF60_RS03875 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CF60_RS03895 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CF60_RS03940 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CF60_RS03950 SM00935 Outer membrane protein (OmpH-like) CF60_RS03980 SM00481 DNA polymerase alpha chain like domain CF60_RS04000 SM00977 TilS substrate C-terminal domain CF60_RS04015 SM01322 CF60_RS04015 CF60_RS04060 SM00382 ATPases associated with a variety of cellular activities CF60_RS04060 SM00930 CF60_RS04060 CF60_RS04120 SM00257 Lysin motif CF60_RS04125 SM00849 Metallo-beta-lactamase superfamily CF60_RS04140 SM00479 CF60_RS04140 CF60_RS04190 SM00382 ATPases associated with a variety of cellular activities CF60_RS04190 SM01086 C-terminal, D2-small domain, of ClpB protein CF60_RS04390 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CF60_RS04450 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CF60_RS04455 SM01092 CO dehydrogenase flavoprotein C-terminal domain CF60_RS04500 SM00421 helix_turn_helix, Lux Regulon CF60_RS04550 SM00634 Bacterial Ig-like domain (group 1) CF60_RS04555 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS04555 SM00871 Bacterial transcription activator, effector binding domain CF60_RS04580 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS04635 SM00052 Putative diguanylate phosphodiesterase CF60_RS04635 SM00421 helix_turn_helix, Lux Regulon CF60_RS04650 SM00248 ankyrin repeats CF60_RS04680 SM01022 CF60_RS04680 CF60_RS04690 SM00382 ATPases associated with a variety of cellular activities CF60_RS04705 SM00829 Enoylreductase CF60_RS04730 SM00382 ATPases associated with a variety of cellular activities CF60_RS04770 SM00947 Carbonic anhydrase CF60_RS04775 SM01116 CF60_RS04775 CF60_RS04785 SM01266 CF60_RS04785 CF60_RS04795 SM01038 Beta galactosidase small chain CF60_RS04805 SM00346 helix_turn_helix isocitrate lyase regulation CF60_RS04830 SM00859 Semialdehyde dehydrogenase, NAD binding domain CF60_RS04885 SM00062 Bacterial periplasmic substrate-binding proteins CF60_RS04890 SM00382 ATPases associated with a variety of cellular activities CF60_RS04905 SM01004 Delta-aminolevulinic acid dehydratase CF60_RS04910 SM00869 Autotransporter beta-domain CF60_RS04965 SM00098 Alkaline phosphatase homologues CF60_RS04975 SM00267 diguanylate cyclase CF60_RS05040 SM00448 cheY-homologous receiver domain CF60_RS05040 SM00862 Transcriptional regulatory protein, C terminal CF60_RS05045 SM00091 PAS domain CF60_RS05045 SM00387 Histidine kinase-like ATPases CF60_RS05045 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS05060 SM00642 Alpha-amylase domain CF60_RS05085 SM01323 CF60_RS05085 CF60_RS05100 SM00507 HNH nucleases CF60_RS05125 SM01321 CF60_RS05125 CF60_RS05180 SM00861 Transketolase, pyrimidine binding domain CF60_RS05275 SM00382 ATPases associated with a variety of cellular activities CF60_RS05275 SM00994 ClpX C4-type zinc finger CF60_RS05275 SM01086 C-terminal, D2-small domain, of ClpB protein CF60_RS05280 SM00382 ATPases associated with a variety of cellular activities CF60_RS05280 SM00464 Found in ATP-dependent protease La (LON) CF60_RS05285 SM00411 bacterial (prokaryotic) histone like domain CF60_RS05295 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CF60_RS05320 SM00344 helix_turn_helix ASNC type CF60_RS05325 SM00382 ATPases associated with a variety of cellular activities CF60_RS05330 SM00382 ATPases associated with a variety of cellular activities CF60_RS05335 SM00938 Nitrogen regulatory protein P-II CF60_RS05365 SM00052 Putative diguanylate phosphodiesterase CF60_RS05375 SM01266 CF60_RS05375 CF60_RS05430 SM00382 ATPases associated with a variety of cellular activities CF60_RS05440 SM00493 CF60_RS05440 CF60_RS05445 SM00387 Histidine kinase-like ATPases CF60_RS05525 SM00382 ATPases associated with a variety of cellular activities CF60_RS05535 SM00422 helix_turn_helix, mercury resistance CF60_RS05565 SM00244 prohibitin homologues CF60_RS05570 SM00382 ATPases associated with a variety of cellular activities CF60_RS05585 SM00822 CF60_RS05585 CF60_RS05595 SM00382 ATPases associated with a variety of cellular activities CF60_RS05620 SM00450 Rhodanese Homology Domain CF60_RS05635 SM00346 helix_turn_helix isocitrate lyase regulation CF60_RS05715 SM01001 AIR carboxylase CF60_RS05730 SM00840 CF60_RS05730 CF60_RS05775 SM00421 helix_turn_helix, Lux Regulon CF60_RS05775 SM00448 cheY-homologous receiver domain CF60_RS05840 SM00530 Helix-turn-helix XRE-family like proteins CF60_RS05880 SM00857 Resolvase, N terminal domain CF60_RS05890 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS06030 SM00635 Bacterial Ig-like domain 2 CF60_RS06060 SM00232 JAB/MPN domain CF60_RS06130 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS06145 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS06155 SM00028 Tetratricopeptide repeats CF60_RS06225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CF60_RS06225 SM00387 Histidine kinase-like ATPases CF60_RS06225 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS06230 SM00448 cheY-homologous receiver domain CF60_RS06230 SM00862 Transcriptional regulatory protein, C terminal CF60_RS06325 SM00923 MbtH-like protein CF60_RS06330 SM00823 Phosphopantetheine attachment site CF60_RS06330 SM00824 Thioesterase CF60_RS06340 SM00382 ATPases associated with a variety of cellular activities CF60_RS06380 SM00822 CF60_RS06380 CF60_RS06410 SM00470 ParB-like nuclease domain CF60_RS06485 SM00764 Citrate lyase ligase C-terminal domain CF60_RS06490 SM00091 PAS domain CF60_RS06490 SM00387 Histidine kinase-like ATPases CF60_RS06495 SM00448 cheY-homologous receiver domain CF60_RS06510 SM00357 Cold shock protein domain CF60_RS06530 SM00729 Elongator protein 3, MiaB family, Radical SAM CF60_RS06555 SM00936 Penicillin-binding protein 5, C-terminal domain CF60_RS06585 SM00855 Phosphoglycerate mutase family CF60_RS06620 SM00382 ATPases associated with a variety of cellular activities CF60_RS06635 SM00062 Bacterial periplasmic substrate-binding proteins CF60_RS06645 SM00116 Domain in cystathionine beta-synthase and other proteins. CF60_RS06645 SM01091 Transporter associated domain CF60_RS06660 SM00729 Elongator protein 3, MiaB family, Radical SAM CF60_RS06790 SM01321 CF60_RS06790 CF60_RS06800 SM00448 cheY-homologous receiver domain CF60_RS06800 SM00862 Transcriptional regulatory protein, C terminal CF60_RS06865 SM00796 Allophanate hydrolase subunit 1 CF60_RS06870 SM00797 Allophanate hydrolase subunit 2 CF60_RS06880 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CF60_RS06880 SM01232 CF60_RS06880 CF60_RS06960 SM00861 Transketolase, pyrimidine binding domain CF60_RS06975 SM00881 CoA binding domain CF60_RS07155 SM00855 Phosphoglycerate mutase family CF60_RS07180 SM00382 ATPases associated with a variety of cellular activities CF60_RS07210 SM00382 ATPases associated with a variety of cellular activities CF60_RS07260 SM00729 Elongator protein 3, MiaB family, Radical SAM CF60_RS07260 SM00876 Biotin and Thiamin Synthesis associated domain CF60_RS07280 SM00487 DEAD-like helicases superfamily CF60_RS07280 SM00490 helicase superfamily c-terminal domain CF60_RS07295 SM00729 Elongator protein 3, MiaB family, Radical SAM CF60_RS07300 SM00852 Probable molybdopterin binding domain CF60_RS07335 SM00155 Phospholipase D. Active site motifs. CF60_RS07360 SM00382 ATPases associated with a variety of cellular activities CF60_RS07375 SM00487 DEAD-like helicases superfamily CF60_RS07375 SM00490 helicase superfamily c-terminal domain CF60_RS07390 SM00487 DEAD-like helicases superfamily CF60_RS07390 SM00488 CF60_RS07390 CF60_RS07390 SM00491 CF60_RS07390 CF60_RS07415 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CF60_RS07445 SM00382 ATPases associated with a variety of cellular activities CF60_RS07455 SM00062 Bacterial periplasmic substrate-binding proteins CF60_RS07455 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CF60_RS07490 SM00529 Helix-turn-helix diphteria tox regulatory element CF60_RS07505 SM00382 ATPases associated with a variety of cellular activities CF60_RS07525 SM00354 helix_turn _helix lactose operon repressor CF60_RS07560 SM00852 Probable molybdopterin binding domain CF60_RS07570 SM00382 ATPases associated with a variety of cellular activities CF60_RS07590 SM00052 Putative diguanylate phosphodiesterase CF60_RS07595 SM00267 diguanylate cyclase CF60_RS07600 SM00729 Elongator protein 3, MiaB family, Radical SAM CF60_RS07620 SM00936 Penicillin-binding protein 5, C-terminal domain CF60_RS07625 SM00420 helix_turn_helix, Deoxyribose operon repressor CF60_RS07625 SM01134 CF60_RS07625 CF60_RS07630 SM00014 Acid phosphatase homologues CF60_RS07705 SM00382 ATPases associated with a variety of cellular activities CF60_RS07745 SM00062 Bacterial periplasmic substrate-binding proteins CF60_RS07745 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CF60_RS07750 SM00382 ATPases associated with a variety of cellular activities CF60_RS07840 SM00382 ATPases associated with a variety of cellular activities CF60_RS07845 SM00357 Cold shock protein domain CF60_RS07855 SM00382 ATPases associated with a variety of cellular activities CF60_RS07855 SM01086 C-terminal, D2-small domain, of ClpB protein CF60_RS07865 SM00316 Ribosomal protein S1-like RNA-binding domain CF60_RS07875 SM00382 ATPases associated with a variety of cellular activities CF60_RS07880 SM00382 ATPases associated with a variety of cellular activities CF60_RS07890 SM00344 helix_turn_helix ASNC type CF60_RS07895 SM00843 CF60_RS07895 CF60_RS07905 SM00382 ATPases associated with a variety of cellular activities CF60_RS07915 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS07990 SM01321 CF60_RS07990 CF60_RS08005 SM00316 Ribosomal protein S1-like RNA-binding domain CF60_RS08010 SM00411 bacterial (prokaryotic) histone like domain CF60_RS08040 SM00382 ATPases associated with a variety of cellular activities CF60_RS08105 SM00849 Metallo-beta-lactamase superfamily CF60_RS08170 SM00062 Bacterial periplasmic substrate-binding proteins CF60_RS08195 SM00981 CF60_RS08195 CF60_RS08200 SM00382 ATPases associated with a variety of cellular activities CF60_RS08275 SM00851 MGS-like domain CF60_RS08290 SM00881 CoA binding domain CF60_RS08295 SM00992 Hemimethylated DNA-binding protein YccV like CF60_RS08300 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CF60_RS08375 SM00357 Cold shock protein domain CF60_RS08380 SM00357 Cold shock protein domain CF60_RS08405 SM00448 cheY-homologous receiver domain CF60_RS08405 SM00862 Transcriptional regulatory protein, C terminal CF60_RS08430 SM00271 DnaJ molecular chaperone homology domain CF60_RS08470 SM00903 Flavin reductase like domain CF60_RS08565 SM00481 DNA polymerase alpha chain like domain CF60_RS08595 SM00421 helix_turn_helix, Lux Regulon CF60_RS08625 SM00506 Appr-1"-p processing enzyme CF60_RS08630 SM00155 Phospholipase D. Active site motifs. CF60_RS08685 SM00450 Rhodanese Homology Domain CF60_RS08690 SM00867 YceI-like domain CF60_RS08765 SM00858 CF60_RS08765 CF60_RS08810 SM00047 Lysozyme subfamily 2 CF60_RS08825 SM00316 Ribosomal protein S1-like RNA-binding domain CF60_RS08835 SM00363 S4 RNA-binding domain CF60_RS08865 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CF60_RS08870 SM00822 CF60_RS08870 CF60_RS08880 SM00825 Beta-ketoacyl synthase CF60_RS08970 SM00257 Lysin motif CF60_RS08990 SM00382 ATPases associated with a variety of cellular activities CF60_RS09035 SM00382 ATPases associated with a variety of cellular activities CF60_RS09050 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CF60_RS09055 SM00387 Histidine kinase-like ATPases CF60_RS09060 SM00448 cheY-homologous receiver domain CF60_RS09060 SM00862 Transcriptional regulatory protein, C terminal CF60_RS09090 SM01329 CF60_RS09090 CF60_RS09110 SM00422 helix_turn_helix, mercury resistance CF60_RS09115 SM00052 Putative diguanylate phosphodiesterase CF60_RS09125 SM00052 Putative diguanylate phosphodiesterase CF60_RS09140 SM00869 Autotransporter beta-domain CF60_RS09160 SM00869 Autotransporter beta-domain CF60_RS09235 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS09240 SM01321 CF60_RS09240 CF60_RS09255 SM01005 Alanine racemase, C-terminal domain CF60_RS09265 SM01091 Transporter associated domain CF60_RS09305 SM00382 ATPases associated with a variety of cellular activities CF60_RS09330 SM01120 CF60_RS09330 CF60_RS09340 SM00091 PAS domain CF60_RS09340 SM00382 ATPases associated with a variety of cellular activities CF60_RS09345 SM00869 Autotransporter beta-domain CF60_RS09360 SM01400 CF60_RS09360 CF60_RS09380 SM00937 CF60_RS09380 CF60_RS09440 SM00421 helix_turn_helix, Lux Regulon CF60_RS09440 SM00448 cheY-homologous receiver domain CF60_RS09445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CF60_RS09445 SM00387 Histidine kinase-like ATPases CF60_RS09460 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS09505 SM00448 cheY-homologous receiver domain CF60_RS09515 SM00528 Domain in histone-like proteins of HNS family CF60_RS09545 SM00382 ATPases associated with a variety of cellular activities CF60_RS09550 SM00382 ATPases associated with a variety of cellular activities CF60_RS09555 SM01321 CF60_RS09555 CF60_RS09565 SM00155 Phospholipase D. Active site motifs. CF60_RS09650 SM00481 DNA polymerase alpha chain like domain CF60_RS09665 SM00363 S4 RNA-binding domain CF60_RS09685 SM00822 CF60_RS09685 CF60_RS09710 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CF60_RS09710 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CF60_RS09710 SM00493 CF60_RS09710 CF60_RS09750 SM00014 Acid phosphatase homologues CF60_RS09760 SM00028 Tetratricopeptide repeats CF60_RS09765 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CF60_RS09780 SM00420 helix_turn_helix, Deoxyribose operon repressor CF60_RS09780 SM01134 CF60_RS09780 CF60_RS09790 SM00052 Putative diguanylate phosphodiesterase CF60_RS09790 SM00091 PAS domain CF60_RS09790 SM00267 diguanylate cyclase CF60_RS09800 SM00357 Cold shock protein domain CF60_RS09800 SM00955 CF60_RS09800 CF60_RS09840 SM00382 ATPases associated with a variety of cellular activities CF60_RS09845 SM00382 ATPases associated with a variety of cellular activities CF60_RS09895 SM01230 CF60_RS09895 CF60_RS09905 SM00530 Helix-turn-helix XRE-family like proteins CF60_RS09925 SM00382 ATPases associated with a variety of cellular activities CF60_RS09950 SM00450 Rhodanese Homology Domain CF60_RS09965 SM00091 PAS domain CF60_RS09965 SM00382 ATPases associated with a variety of cellular activities CF60_RS09975 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CF60_RS10025 SM00100 Cyclic nucleotide-monophosphate binding domain CF60_RS10025 SM00419 helix_turn_helix, cAMP Regulatory protein CF60_RS10080 SM00463 Small MutS-related domain CF60_RS10085 SM00091 PAS domain CF60_RS10085 SM00267 diguanylate cyclase CF60_RS10100 SM00487 DEAD-like helicases superfamily CF60_RS10100 SM00490 helicase superfamily c-terminal domain CF60_RS10265 SM00470 ParB-like nuclease domain CF60_RS10445 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS10475 SM00487 DEAD-like helicases superfamily CF60_RS10510 SM00305 Hint (Hedgehog/Intein) domain C-terminal region CF60_RS10565 SM00470 ParB-like nuclease domain CF60_RS10610 SM00060 Fibronectin type 3 domain CF60_RS10640 SM00857 Resolvase, N terminal domain CF60_RS10660 SM00890 Domain of unknown function CF60_RS10695 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS10795 SM00382 ATPases associated with a variety of cellular activities CF60_RS10795 SM00487 DEAD-like helicases superfamily CF60_RS10795 SM00490 helicase superfamily c-terminal domain CF60_RS10795 SM00847 Helicase associated domain (HA2) Add an annotation CF60_RS10810 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CF60_RS10840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CF60_RS10840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CF60_RS10840 SM00319 Homologues of the ligand binding domain of Tar CF60_RS10850 SM01150 CF60_RS10850 CF60_RS10900 SM00530 Helix-turn-helix XRE-family like proteins CF60_RS10920 SM00530 Helix-turn-helix XRE-family like proteins CF60_RS10925 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS10935 SM00382 ATPases associated with a variety of cellular activities CF60_RS10980 SM00829 Enoylreductase CF60_RS10985 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS10985 SM00895 CF60_RS10985 CF60_RS11040 SM00267 diguanylate cyclase CF60_RS11045 SM00849 Metallo-beta-lactamase superfamily CF60_RS11055 SM00903 Flavin reductase like domain CF60_RS11085 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS11115 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS11140 SM01321 CF60_RS11140 CF60_RS11145 SM00530 Helix-turn-helix XRE-family like proteins CF60_RS11150 SM00829 Enoylreductase CF60_RS11155 SM00919 Malic enzyme, NAD binding domain CF60_RS11155 SM01274 CF60_RS11155 CF60_RS11175 SM00382 ATPases associated with a variety of cellular activities CF60_RS11180 SM00382 ATPases associated with a variety of cellular activities CF60_RS11205 SM00052 Putative diguanylate phosphodiesterase CF60_RS11205 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CF60_RS11205 SM00091 PAS domain CF60_RS11205 SM00267 diguanylate cyclase CF60_RS11210 SM00267 diguanylate cyclase CF60_RS11245 SM00382 ATPases associated with a variety of cellular activities CF60_RS11260 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS11305 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS11345 SM00530 Helix-turn-helix XRE-family like proteins CF60_RS11350 SM00869 Autotransporter beta-domain CF60_RS11390 SM01133 CF60_RS11390 CF60_RS11420 SM00267 diguanylate cyclase CF60_RS11460 SM00347 helix_turn_helix multiple antibiotic resistance protein CF60_RS11465 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS11500 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS11500 SM00866 CF60_RS11500 CF60_RS11520 SM00267 diguanylate cyclase CF60_RS11545 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS11545 SM00895 CF60_RS11545 CF60_RS11570 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CF60_RS11600 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS11605 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS11685 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CF60_RS11685 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CF60_RS11710 SM00448 cheY-homologous receiver domain CF60_RS11710 SM00862 Transcriptional regulatory protein, C terminal CF60_RS11715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CF60_RS11715 SM00387 Histidine kinase-like ATPases CF60_RS11715 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS11770 SM00354 helix_turn _helix lactose operon repressor CF60_RS11845 SM00900 CF60_RS11845 CF60_RS11855 SM00478 endonuclease III CF60_RS11855 SM00525 CF60_RS11855 CF60_RS11900 SM00363 S4 RNA-binding domain CF60_RS11925 SM00347 helix_turn_helix multiple antibiotic resistance protein CF60_RS11975 SM00479 CF60_RS11975 CF60_RS11980 SM00382 ATPases associated with a variety of cellular activities CF60_RS11980 SM00487 DEAD-like helicases superfamily CF60_RS11980 SM00490 helicase superfamily c-terminal domain CF60_RS12010 SM00354 helix_turn _helix lactose operon repressor CF60_RS12085 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain CF60_RS12110 SM00257 Lysin motif CF60_RS12130 SM00382 ATPases associated with a variety of cellular activities CF60_RS12190 SM00882 Coenzyme A transferase CF60_RS12200 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS12210 SM00893 Electron transfer flavoprotein domain CF60_RS12215 SM00893 Electron transfer flavoprotein domain CF60_RS12275 SM00382 ATPases associated with a variety of cellular activities CF60_RS12290 SM00411 bacterial (prokaryotic) histone like domain CF60_RS12295 SM00873 B3/4 domain CF60_RS12295 SM00874 tRNA synthetase B5 domain CF60_RS12295 SM00896 Ferredoxin-fold anticodon binding domain CF60_RS12320 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CF60_RS12385 SM01060 CF60_RS12385 CF60_RS12400 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS12435 SM00465 GIY-YIG type nucleases (URI domain) CF60_RS12510 SM00382 ATPases associated with a variety of cellular activities CF60_RS12515 SM00450 Rhodanese Homology Domain CF60_RS12535 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CF60_RS12545 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CF60_RS12545 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CF60_RS12545 SM00493 CF60_RS12545 CF60_RS12575 SM00870 CF60_RS12575 CF60_RS12590 SM00420 helix_turn_helix, Deoxyribose operon repressor CF60_RS12590 SM01134 CF60_RS12590 CF60_RS12610 SM00829 Enoylreductase CF60_RS12635 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CF60_RS12655 SM00763 PrkA AAA domain CF60_RS12665 SM00267 diguanylate cyclase CF60_RS12670 SM00267 diguanylate cyclase CF60_RS12690 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS12710 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CF60_RS12710 SM00267 diguanylate cyclase CF60_RS12745 SM01329 CF60_RS12745 CF60_RS12765 SM00341 Helicase and RNase D C-terminal CF60_RS12765 SM00474 3'-5' exonuclease CF60_RS12785 SM00487 DEAD-like helicases superfamily CF60_RS12785 SM00491 CF60_RS12785 CF60_RS12825 SM00052 Putative diguanylate phosphodiesterase CF60_RS12830 SM01091 Transporter associated domain CF60_RS12875 SM00357 Cold shock protein domain CF60_RS12905 SM00346 helix_turn_helix isocitrate lyase regulation CF60_RS12920 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CF60_RS12920 SM00245 tail specific protease CF60_RS12925 SM00945 ProQ/FINO family CF60_RS12930 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CF60_RS12995 SM00479 CF60_RS12995 CF60_RS13005 SM01321 CF60_RS13005 CF60_RS13070 SM01321 CF60_RS13070 CF60_RS13080 SM00257 Lysin motif CF60_RS13090 SM00382 ATPases associated with a variety of cellular activities CF60_RS13100 SM00382 ATPases associated with a variety of cellular activities CF60_RS13105 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CF60_RS13180 SM00836 DALR anticodon binding domain CF60_RS13205 SM00448 cheY-homologous receiver domain CF60_RS13210 SM00448 cheY-homologous receiver domain CF60_RS13215 SM00138 Methyltransferase, chemotaxis proteins CF60_RS13220 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CF60_RS13220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CF60_RS13220 SM00319 Homologues of the ligand binding domain of Tar CF60_RS13225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CF60_RS13225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CF60_RS13225 SM00319 Homologues of the ligand binding domain of Tar CF60_RS13230 SM00260 Two component signalling adaptor domain CF60_RS13280 SM00382 ATPases associated with a variety of cellular activities CF60_RS13350 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CF60_RS13350 SM00465 GIY-YIG type nucleases (URI domain) CF60_RS13355 SM00421 helix_turn_helix, Lux Regulon CF60_RS13355 SM00448 cheY-homologous receiver domain CF60_RS13370 SM00421 helix_turn_helix, Lux Regulon CF60_RS13375 SM00382 ATPases associated with a variety of cellular activities CF60_RS13390 SM00062 Bacterial periplasmic substrate-binding proteins CF60_RS13390 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CF60_RS13425 SM00642 Alpha-amylase domain CF60_RS13490 SM00382 ATPases associated with a variety of cellular activities CF60_RS13540 SM00421 helix_turn_helix, Lux Regulon CF60_RS13560 SM00267 diguanylate cyclase CF60_RS13590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CF60_RS13615 SM00387 Histidine kinase-like ATPases CF60_RS13615 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS13620 SM00448 cheY-homologous receiver domain CF60_RS13620 SM00862 Transcriptional regulatory protein, C terminal CF60_RS13625 SM00095 Transthyretin CF60_RS13665 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CF60_RS13665 SM00634 Bacterial Ig-like domain (group 1) CF60_RS13795 SM00871 Bacterial transcription activator, effector binding domain CF60_RS13800 SM00936 Penicillin-binding protein 5, C-terminal domain CF60_RS13805 SM00479 CF60_RS13805 CF60_RS13875 SM01321 CF60_RS13875 CF60_RS13885 SM00984 UDP binding domain CF60_RS13890 SM01350 CF60_RS13890 CF60_RS14040 SM00226 Low molecular weight phosphatase family CF60_RS14050 SM00116 Domain in cystathionine beta-synthase and other proteins. CF60_RS14050 SM01091 Transporter associated domain CF60_RS14090 SM00052 Putative diguanylate phosphodiesterase CF60_RS14090 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CF60_RS14090 SM00091 PAS domain CF60_RS14090 SM00267 diguanylate cyclase CF60_RS14095 SM00478 endonuclease III CF60_RS14095 SM01009 AlkA N-terminal domain CF60_RS14115 SM00327 von Willebrand factor (vWF) type A domain CF60_RS14140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CF60_RS14140 SM00387 Histidine kinase-like ATPases CF60_RS14140 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS14145 SM00448 cheY-homologous receiver domain CF60_RS14145 SM00862 Transcriptional regulatory protein, C terminal CF60_RS14200 SM00857 Resolvase, N terminal domain CF60_RS14375 SM00530 Helix-turn-helix XRE-family like proteins CF60_RS14395 SM00046 Diacylglycerol kinase catalytic domain (presumed) CF60_RS14400 SM00420 helix_turn_helix, Deoxyribose operon repressor CF60_RS14400 SM01134 CF60_RS14400 CF60_RS14405 SM00829 Enoylreductase CF60_RS14435 SM01133 CF60_RS14435 CF60_RS14455 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS14455 SM00866 CF60_RS14455 CF60_RS14460 SM00641 Glycosyl hydrolases family 25 CF60_RS14530 SM00773 Proposed nucleic acid binding domain CF60_RS14550 SM00382 ATPases associated with a variety of cellular activities CF60_RS14560 SM00327 von Willebrand factor (vWF) type A domain CF60_RS14580 SM00448 cheY-homologous receiver domain CF60_RS14580 SM00850 LytTr DNA-binding domain CF60_RS14585 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CF60_RS14590 SM00422 helix_turn_helix, mercury resistance CF60_RS14605 SM00382 ATPases associated with a variety of cellular activities CF60_RS14620 SM01217 CF60_RS14620 CF60_RS14735 SM00382 ATPases associated with a variety of cellular activities CF60_RS14745 SM00354 helix_turn _helix lactose operon repressor CF60_RS14800 SM00518 AP endonuclease family 2 CF60_RS14820 SM00100 Cyclic nucleotide-monophosphate binding domain CF60_RS14865 SM00841 Elongation factor P, C-terminal CF60_RS14865 SM01185 CF60_RS14865 CF60_RS14875 SM00833 Cobalamin synthesis protein cobW C-terminal domain CF60_RS14880 SM00014 Acid phosphatase homologues CF60_RS14890 SM00052 Putative diguanylate phosphodiesterase CF60_RS14910 SM00382 ATPases associated with a variety of cellular activities CF60_RS14925 SM00363 S4 RNA-binding domain CF60_RS14930 SM00487 DEAD-like helicases superfamily CF60_RS14930 SM00490 helicase superfamily c-terminal domain CF60_RS14960 SM00869 Autotransporter beta-domain CF60_RS14970 SM00421 helix_turn_helix, Lux Regulon CF60_RS14970 SM00448 cheY-homologous receiver domain CF60_RS15010 SM00382 ATPases associated with a variety of cellular activities CF60_RS15035 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS15065 SM00382 ATPases associated with a variety of cellular activities CF60_RS15075 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS15095 SM00387 Histidine kinase-like ATPases CF60_RS15100 SM00421 helix_turn_helix, Lux Regulon CF60_RS15100 SM00448 cheY-homologous receiver domain CF60_RS15105 SM00387 Histidine kinase-like ATPases CF60_RS15105 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS15105 SM00448 cheY-homologous receiver domain CF60_RS15115 SM00382 ATPases associated with a variety of cellular activities CF60_RS15115 SM00448 cheY-homologous receiver domain CF60_RS15120 SM00882 Coenzyme A transferase CF60_RS15125 SM00882 Coenzyme A transferase CF60_RS15150 SM01359 CF60_RS15150 CF60_RS15150 SM01360 CF60_RS15150 CF60_RS15165 SM00434 DNA Topoisomerase IV CF60_RS15190 SM00869 Autotransporter beta-domain CF60_RS15275 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CF60_RS15280 SM00346 helix_turn_helix isocitrate lyase regulation CF60_RS15285 SM00852 Probable molybdopterin binding domain CF60_RS15440 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CF60_RS15440 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CF60_RS15445 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CF60_RS15480 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CF60_RS15545 SM00905 Dihydroneopterin aldolase CF60_RS15560 SM00382 ATPases associated with a variety of cellular activities CF60_RS15575 SM00062 Bacterial periplasmic substrate-binding proteins CF60_RS15580 SM00062 Bacterial periplasmic substrate-binding proteins CF60_RS15625 SM00859 Semialdehyde dehydrogenase, NAD binding domain CF60_RS15645 SM00825 Beta-ketoacyl synthase CF60_RS15685 SM00463 Small MutS-related domain CF60_RS15800 SM00640 Glycosyl hydrolases family 32 CF60_RS15805 SM00354 helix_turn _helix lactose operon repressor CF60_RS15830 SM00421 helix_turn_helix, Lux Regulon CF60_RS15830 SM00448 cheY-homologous receiver domain CF60_RS15835 SM00062 Bacterial periplasmic substrate-binding proteins CF60_RS15835 SM00073 Histidine Phosphotransfer domain CF60_RS15835 SM00387 Histidine kinase-like ATPases CF60_RS15835 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS15835 SM00448 cheY-homologous receiver domain CF60_RS15890 SM00387 Histidine kinase-like ATPases CF60_RS15895 SM00448 cheY-homologous receiver domain CF60_RS15895 SM00850 LytTr DNA-binding domain CF60_RS15900 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS15955 SM00052 Putative diguanylate phosphodiesterase CF60_RS15955 SM00267 diguanylate cyclase CF60_RS16045 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CF60_RS16045 SM00292 breast cancer carboxy-terminal domain CF60_RS16045 SM00532 Ligase N family CF60_RS16050 SM00771 ZipA, C-terminal domain (FtsZ-binding) CF60_RS16095 SM00382 ATPases associated with a variety of cellular activities CF60_RS16115 SM00822 CF60_RS16115 CF60_RS16160 SM00646 CF60_RS16160 CF60_RS16170 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS16175 SM00877 CF60_RS16175 CF60_RS16180 SM00877 CF60_RS16180 CF60_RS16225 SM00877 CF60_RS16225 CF60_RS16250 SM00877 CF60_RS16250 CF60_RS16255 SM00919 Malic enzyme, NAD binding domain CF60_RS16255 SM01274 CF60_RS16255 CF60_RS16265 SM00861 Transketolase, pyrimidine binding domain CF60_RS16285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CF60_RS16285 SM00387 Histidine kinase-like ATPases CF60_RS16355 SM01130 CF60_RS16355 CF60_RS16420 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CF60_RS16420 SM00382 ATPases associated with a variety of cellular activities CF60_RS16480 SM00052 Putative diguanylate phosphodiesterase CF60_RS16480 SM00267 diguanylate cyclase CF60_RS16510 SM00116 Domain in cystathionine beta-synthase and other proteins. CF60_RS16510 SM01240 CF60_RS16510 CF60_RS16545 SM00564 beta-propeller repeat CF60_RS16565 SM00530 Helix-turn-helix XRE-family like proteins CF60_RS16575 SM00562 CF60_RS16575 CF60_RS16585 SM01359 CF60_RS16585 CF60_RS16585 SM01360 CF60_RS16585 CF60_RS16590 SM00450 Rhodanese Homology Domain CF60_RS16620 SM00271 DnaJ molecular chaperone homology domain CF60_RS16710 SM00829 Enoylreductase CF60_RS16720 SM00382 ATPases associated with a variety of cellular activities CF60_RS16730 SM00028 Tetratricopeptide repeats CF60_RS16755 SM00938 Nitrogen regulatory protein P-II CF60_RS16760 SM00382 ATPases associated with a variety of cellular activities CF60_RS16760 SM00448 cheY-homologous receiver domain CF60_RS16770 SM00387 Histidine kinase-like ATPases CF60_RS16770 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS16775 SM01211 CF60_RS16775 CF60_RS16780 SM00062 Bacterial periplasmic substrate-binding proteins CF60_RS16840 SM00358 Double-stranded RNA binding motif CF60_RS16840 SM00535 Ribonuclease III family CF60_RS16890 SM00487 DEAD-like helicases superfamily CF60_RS16890 SM00490 helicase superfamily c-terminal domain CF60_RS16910 SM00986 Uracil DNA glycosylase superfamily CF60_RS16910 SM00987 UreE urease accessory protein, C-terminal domain CF60_RS16915 SM00967 RNA 2'-O ribose methyltransferase substrate binding CF60_RS16930 SM01144 CF60_RS16930 CF60_RS16935 SM00881 CoA binding domain CF60_RS16940 SM00155 Phospholipase D. Active site motifs. CF60_RS16990 SM00382 ATPases associated with a variety of cellular activities CF60_RS16990 SM01086 C-terminal, D2-small domain, of ClpB protein CF60_RS17000 SM00363 S4 RNA-binding domain CF60_RS17020 SM00830 Chorismate mutase type II CF60_RS17025 SM00830 Chorismate mutase type II CF60_RS17045 SM00267 diguanylate cyclase CF60_RS17075 SM00382 ATPases associated with a variety of cellular activities CF60_RS17075 SM00962 SRP54-type protein, GTPase domain CF60_RS17075 SM00963 SRP54-type protein, helical bundle domain CF60_RS17085 SM01091 Transporter associated domain CF60_RS17185 SM00778 Zinc-binding domain of primase-helicase CF60_RS17220 SM00493 CF60_RS17220 CF60_RS17220 SM00778 Zinc-binding domain of primase-helicase CF60_RS17220 SM00885 D5 N terminal like CF60_RS17245 SM00642 Alpha-amylase domain CF60_RS17275 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS17275 SM00895 CF60_RS17275 CF60_RS17280 SM00257 Lysin motif CF60_RS17280 SM00749 bacterial OsmY and nodulation domain CF60_RS17290 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CF60_RS17295 SM00450 Rhodanese Homology Domain CF60_RS17300 SM00528 Domain in histone-like proteins of HNS family CF60_RS17320 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS17350 SM00382 ATPases associated with a variety of cellular activities CF60_RS17380 SM00347 helix_turn_helix multiple antibiotic resistance protein CF60_RS17450 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CF60_RS17465 SM00382 ATPases associated with a variety of cellular activities CF60_RS17505 SM00420 helix_turn_helix, Deoxyribose operon repressor CF60_RS17505 SM01134 CF60_RS17505 CF60_RS17515 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CF60_RS17515 SM00382 ATPases associated with a variety of cellular activities CF60_RS17520 SM00849 Metallo-beta-lactamase superfamily CF60_RS17540 SM00354 helix_turn _helix lactose operon repressor CF60_RS17555 SM00530 Helix-turn-helix XRE-family like proteins CF60_RS17635 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CF60_RS17635 SM00382 ATPases associated with a variety of cellular activities CF60_RS17650 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CF60_RS17650 SM00534 ATPase domain of DNA mismatch repair MUTS family CF60_RS17680 SM00347 helix_turn_helix multiple antibiotic resistance protein CF60_RS17690 SM00257 Lysin motif CF60_RS17760 SM01101 CF60_RS17760 CF60_RS17785 SM00487 DEAD-like helicases superfamily CF60_RS17835 SM00893 Electron transfer flavoprotein domain CF60_RS17880 SM01192 CF60_RS17880 CF60_RS17880 SM01193 CF60_RS17880 CF60_RS17895 SM00954 Region found in RelA / SpoT proteins CF60_RS17905 SM00073 Histidine Phosphotransfer domain CF60_RS17905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CF60_RS17905 SM00387 Histidine kinase-like ATPases CF60_RS17905 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS17905 SM00448 cheY-homologous receiver domain CF60_RS17910 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CF60_RS17915 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CF60_RS17970 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CF60_RS17970 SM00475 5'-3' exonuclease CF60_RS17980 SM01007 Class II Aldolase and Adducin N-terminal domain CF60_RS18005 SM00420 helix_turn_helix, Deoxyribose operon repressor CF60_RS18005 SM01134 CF60_RS18005 CF60_RS18045 SM00925 MltA specific insert domain CF60_RS18065 SM00646 CF60_RS18065 CF60_RS18075 SM00382 ATPases associated with a variety of cellular activities CF60_RS18125 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CF60_RS18145 SM00927 DNA mismatch repair enzyme MutH CF60_RS18190 SM00354 helix_turn _helix lactose operon repressor CF60_RS18240 SM00862 Transcriptional regulatory protein, C terminal CF60_RS18250 SM00421 helix_turn_helix, Lux Regulon CF60_RS18265 SM00382 ATPases associated with a variety of cellular activities CF60_RS18285 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS18305 SM00257 Lysin motif CF60_RS18310 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CF60_RS18315 SM01092 CO dehydrogenase flavoprotein C-terminal domain CF60_RS18325 SM00091 PAS domain CF60_RS18325 SM00382 ATPases associated with a variety of cellular activities CF60_RS18380 SM01092 CO dehydrogenase flavoprotein C-terminal domain CF60_RS18385 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CF60_RS18440 SM00937 CF60_RS18440 CF60_RS18485 SM01022 CF60_RS18485 CF60_RS18520 SM01011 Aminopeptidase P, N-terminal domain CF60_RS18610 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CF60_RS18645 SM00244 prohibitin homologues CF60_RS18650 SM00861 Transketolase, pyrimidine binding domain CF60_RS18715 SM00731 SprT homologues. CF60_RS18740 SM00732 Likely ribonuclease with RNase H fold. CF60_RS18745 SM00382 ATPases associated with a variety of cellular activities CF60_RS18760 SM01152 CF60_RS18760 CF60_RS18770 SM00729 Elongator protein 3, MiaB family, Radical SAM CF60_RS18795 SM00870 CF60_RS18795 CF60_RS18820 SM00478 endonuclease III CF60_RS18820 SM00525 CF60_RS18820 CF60_RS18935 SM00382 ATPases associated with a variety of cellular activities CF60_RS18960 SM01276 CF60_RS18960 CF60_RS19000 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS19000 SM00895 CF60_RS19000 CF60_RS19180 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS19210 SM00729 Elongator protein 3, MiaB family, Radical SAM CF60_RS19220 SM00563 Phosphate acyltransferases CF60_RS19225 SM00434 DNA Topoisomerase IV CF60_RS19230 SM00871 Bacterial transcription activator, effector binding domain CF60_RS19240 SM00448 cheY-homologous receiver domain CF60_RS19240 SM00862 Transcriptional regulatory protein, C terminal CF60_RS19245 SM00387 Histidine kinase-like ATPases CF60_RS19245 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS19295 SM00382 ATPases associated with a variety of cellular activities CF60_RS19305 SM00387 Histidine kinase-like ATPases CF60_RS19305 SM00433 TopoisomeraseII CF60_RS19430 SM00244 prohibitin homologues CF60_RS19450 SM01118 CF60_RS19450 CF60_RS19460 SM00287 Bacterial SH3 domain homologues CF60_RS19475 SM00905 Dihydroneopterin aldolase CF60_RS19480 SM01207 CF60_RS19480 CF60_RS19515 SM00400 zinc finger CF60_RS19515 SM00493 CF60_RS19515 CF60_RS19515 SM00766 DNA primase DnaG DnaB-binding CF60_RS19545 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CF60_RS19545 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CF60_RS19560 SM00354 helix_turn _helix lactose operon repressor CF60_RS19565 SM01038 Beta galactosidase small chain CF60_RS19595 SM00530 Helix-turn-helix XRE-family like proteins CF60_RS19645 SM00858 CF60_RS19645 CF60_RS19660 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS19660 SM00895 CF60_RS19660 CF60_RS19705 SM01321 CF60_RS19705 CF60_RS19820 SM00858 CF60_RS19820 CF60_RS19835 SM00420 helix_turn_helix, Deoxyribose operon repressor CF60_RS19835 SM01134 CF60_RS19835 CF60_RS19920 SM00749 bacterial OsmY and nodulation domain CF60_RS19930 SM00859 Semialdehyde dehydrogenase, NAD binding domain CF60_RS19945 SM00465 GIY-YIG type nucleases (URI domain) CF60_RS19985 SM00487 DEAD-like helicases superfamily CF60_RS19985 SM00490 helicase superfamily c-terminal domain CF60_RS19990 SM00028 Tetratricopeptide repeats CF60_RS19995 SM00316 Ribosomal protein S1-like RNA-binding domain CF60_RS19995 SM00322 K homology RNA-binding domain CF60_RS20000 SM01387 CF60_RS20000 CF60_RS20020 SM00316 Ribosomal protein S1-like RNA-binding domain CF60_RS20065 SM00382 ATPases associated with a variety of cellular activities CF60_RS20075 SM01103 CF60_RS20075 CF60_RS20150 SM00382 ATPases associated with a variety of cellular activities CF60_RS20180 SM00382 ATPases associated with a variety of cellular activities CF60_RS20225 SM00073 Histidine Phosphotransfer domain CF60_RS20225 SM00091 PAS domain CF60_RS20225 SM00387 Histidine kinase-like ATPases CF60_RS20225 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS20225 SM00448 cheY-homologous receiver domain CF60_RS20230 SM00729 Elongator protein 3, MiaB family, Radical SAM CF60_RS20270 SM01130 CF60_RS20270 CF60_RS20275 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS20275 SM00895 CF60_RS20275 CF60_RS20315 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CF60_RS20320 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CF60_RS20375 SM00316 Ribosomal protein S1-like RNA-binding domain CF60_RS20405 SM00052 Putative diguanylate phosphodiesterase CF60_RS20405 SM00267 diguanylate cyclase CF60_RS20410 SM00829 Enoylreductase CF60_RS20435 SM00878 Biotin carboxylase C-terminal domain CF60_RS20505 SM00062 Bacterial periplasmic substrate-binding proteins CF60_RS20520 SM00382 ATPases associated with a variety of cellular activities CF60_RS20700 SM00422 helix_turn_helix, mercury resistance CF60_RS20715 SM00662 RNA polymerases D CF60_RS20720 SM00363 S4 RNA-binding domain CF60_RS20720 SM01390 CF60_RS20720 CF60_RS20785 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CF60_RS20790 SM01374 CF60_RS20790 CF60_RS20810 SM00322 K homology RNA-binding domain CF60_RS20825 SM01382 CF60_RS20825 CF60_RS20825 SM01383 CF60_RS20825 CF60_RS20845 SM01403 CF60_RS20845 CF60_RS20875 SM00838 Elongation factor G C-terminus CF60_RS20875 SM00889 Elongation factor G, domain IV CF60_RS20940 SM00382 ATPases associated with a variety of cellular activities CF60_RS20970 SM00100 Cyclic nucleotide-monophosphate binding domain CF60_RS20970 SM00419 helix_turn_helix, cAMP Regulatory protein CF60_RS21110 SM00965 Secretin and TonB N terminus short domain CF60_RS21155 SM00363 S4 RNA-binding domain CF60_RS21180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CF60_RS21180 SM00387 Histidine kinase-like ATPases CF60_RS21180 SM00388 His Kinase A (phosphoacceptor) domain CF60_RS21185 SM00448 cheY-homologous receiver domain CF60_RS21185 SM00862 Transcriptional regulatory protein, C terminal CF60_RS21195 SM00316 Ribosomal protein S1-like RNA-binding domain CF60_RS21195 SM00732 Likely ribonuclease with RNase H fold. CF60_RS21200 SM00899 CF60_RS21200 CF60_RS21250 SM00421 helix_turn_helix, Lux Regulon CF60_RS21265 SM00382 ATPases associated with a variety of cellular activities CF60_RS21270 SM00420 helix_turn_helix, Deoxyribose operon repressor CF60_RS21270 SM01134 CF60_RS21270 CF60_RS21280 SM00450 Rhodanese Homology Domain CF60_RS21345 SM00642 Alpha-amylase domain CF60_RS21350 SM00642 Alpha-amylase domain CF60_RS21355 SM00859 Semialdehyde dehydrogenase, NAD binding domain CF60_RS21375 SM00354 helix_turn _helix lactose operon repressor CF60_RS21430 SM00382 ATPases associated with a variety of cellular activities CF60_RS21455 SM00382 ATPases associated with a variety of cellular activities CF60_RS21460 SM00382 ATPases associated with a variety of cellular activities CF60_RS21505 SM00382 ATPases associated with a variety of cellular activities CF60_RS21510 SM00382 ATPases associated with a variety of cellular activities CF60_RS21510 SM00962 SRP54-type protein, GTPase domain CF60_RS21510 SM00963 SRP54-type protein, helical bundle domain CF60_RS21585 SM00382 ATPases associated with a variety of cellular activities CF60_RS21590 SM00382 ATPases associated with a variety of cellular activities CF60_RS21655 SM00382 ATPases associated with a variety of cellular activities CF60_RS21745 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CF60_RS21760 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CF60_RS21780 SM00421 helix_turn_helix, Lux Regulon CF60_RS21800 SM00729 Elongator protein 3, MiaB family, Radical SAM CF60_RS21820 SM00382 ATPases associated with a variety of cellular activities CF60_RS21865 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS21870 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS21880 SM01235 CF60_RS21880 CF60_RS21890 SM00421 helix_turn_helix, Lux Regulon CF60_RS21915 SM00052 Putative diguanylate phosphodiesterase CF60_RS21940 SM00052 Putative diguanylate phosphodiesterase CF60_RS21940 SM00267 diguanylate cyclase CF60_RS21945 SM00028 Tetratricopeptide repeats CF60_RS22010 SM00382 ATPases associated with a variety of cellular activities CF60_RS22015 SM00382 ATPases associated with a variety of cellular activities CF60_RS22095 SM00530 Helix-turn-helix XRE-family like proteins CF60_RS22100 SM00357 Cold shock protein domain CF60_RS22165 SM00382 ATPases associated with a variety of cellular activities CF60_RS22175 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS22180 SM00047 Lysozyme subfamily 2 CF60_RS22185 SM00642 Alpha-amylase domain CF60_RS22205 SM00346 helix_turn_helix isocitrate lyase regulation CF60_RS22240 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CF60_RS22250 SM01007 Class II Aldolase and Adducin N-terminal domain CF60_RS22255 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS22400 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS22400 SM00895 CF60_RS22400 CF60_RS22415 SM00971 Serine acetyltransferase, N-terminal CF60_RS22435 SM00450 Rhodanese Homology Domain CF60_RS22465 SM00829 Enoylreductase CF60_RS22545 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CF60_RS22545 SM01232 CF60_RS22545 CF60_RS22605 SM00532 Ligase N family CF60_RS22610 SM00072 Guanylate kinase homologues. CF60_RS22615 SM01409 CF60_RS22615 CF60_RS22620 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CF60_RS22620 SM00954 Region found in RelA / SpoT proteins CF60_RS22630 SM00487 DEAD-like helicases superfamily CF60_RS22630 SM00490 helicase superfamily c-terminal domain CF60_RS22795 SM00387 Histidine kinase-like ATPases CF60_RS22800 SM00421 helix_turn_helix, Lux Regulon CF60_RS22800 SM00448 cheY-homologous receiver domain CF60_RS22880 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS22895 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS22895 SM00866 CF60_RS22895 CF60_RS22940 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CF60_RS22955 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS22955 SM00895 CF60_RS22955 CF60_RS22975 SM00387 Histidine kinase-like ATPases CF60_RS22975 SM00433 TopoisomeraseII CF60_RS22985 SM00480 DNA polymerase III beta subunit CF60_RS22990 SM00382 ATPases associated with a variety of cellular activities CF60_RS22990 SM00760 Bacterial dnaA protein helix-turn-helix domain CF60_RS23005 SM01234 CF60_RS23005 CF60_RS23090 SM00382 ATPases associated with a variety of cellular activities CF60_RS23145 SM00382 ATPases associated with a variety of cellular activities CF60_RS23190 SM01228 CF60_RS23190 CF60_RS23200 SM00344 helix_turn_helix ASNC type CF60_RS23210 SM00327 von Willebrand factor (vWF) type A domain CF60_RS23215 SM00382 ATPases associated with a variety of cellular activities CF60_RS23230 SM00382 ATPases associated with a variety of cellular activities CF60_RS23260 SM00345 helix_turn_helix gluconate operon transcriptional repressor CF60_RS23260 SM00895 CF60_RS23260 CF60_RS23315 SM00382 ATPases associated with a variety of cellular activities CF60_RS23380 SM00487 DEAD-like helicases superfamily CF60_RS23380 SM00490 helicase superfamily c-terminal domain CF60_RS23395 SM00357 Cold shock protein domain CF60_RS23395 SM00382 ATPases associated with a variety of cellular activities CF60_RS23395 SM00959 Rho termination factor, N-terminal domain CF60_RS23400 SM01321 CF60_RS23400 CF60_RS23425 SM00984 UDP binding domain CF60_RS23535 SM01219 CF60_RS23535 CF60_RS23615 SM00341 Helicase and RNase D C-terminal CF60_RS23615 SM00487 DEAD-like helicases superfamily CF60_RS23615 SM00490 helicase superfamily c-terminal domain CF60_RS23615 SM00956 CF60_RS23615 CF60_RS23720 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CF60_RS23805 SM00470 ParB-like nuclease domain CF60_RS23960 SM00640 Glycosyl hydrolases family 32 CF60_RS23975 SM00354 helix_turn _helix lactose operon repressor CF60_RS24000 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS24005 SM00945 ProQ/FINO family CF60_RS24045 SM00869 Autotransporter beta-domain CF60_RS24080 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CF60_RS24090 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS24220 SM00363 S4 RNA-binding domain CF60_RS24315 SM00354 helix_turn _helix lactose operon repressor CF60_RS24410 SM00155 Phospholipase D. Active site motifs. CF60_RS24450 SM00493 CF60_RS24450 CF60_RS24560 SM00342 helix_turn_helix, arabinose operon control protein CF60_RS24670 SM00493 CF60_RS24670 CF60_RS24670 SM00778 Zinc-binding domain of primase-helicase CF60_RS24670 SM00885 D5 N terminal like CF60_RS24945 SM00342 helix_turn_helix, arabinose operon control protein