CF57_RS00005	SM00382	ATPases associated with a variety of cellular activities
CF57_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
CF57_RS00010	SM00480	DNA polymerase III beta subunit
CF57_RS00020	SM00387	Histidine kinase-like ATPases
CF57_RS00020	SM00433	TopoisomeraseII
CF57_RS00045	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS00045	SM00895	CF57_RS00045
CF57_RS00060	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CF57_RS00100	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS00100	SM00866	CF57_RS00100
CF57_RS00170	SM00421	helix_turn_helix, Lux Regulon
CF57_RS00170	SM00448	cheY-homologous receiver domain
CF57_RS00175	SM00387	Histidine kinase-like ATPases
CF57_RS00270	SM00487	DEAD-like helicases superfamily
CF57_RS00270	SM00490	helicase superfamily c-terminal domain
CF57_RS00280	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CF57_RS00280	SM00954	Region found in RelA / SpoT proteins
CF57_RS00285	SM01409	CF57_RS00285
CF57_RS00290	SM00072	Guanylate kinase homologues.
CF57_RS00295	SM00532	Ligase N family
CF57_RS00355	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CF57_RS00355	SM01232	CF57_RS00355
CF57_RS00435	SM00829	Enoylreductase
CF57_RS00460	SM00450	Rhodanese Homology Domain
CF57_RS00480	SM00971	Serine acetyltransferase, N-terminal
CF57_RS00495	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS00495	SM00895	CF57_RS00495
CF57_RS00635	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS00640	SM01007	Class II Aldolase and Adducin N-terminal domain
CF57_RS00650	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CF57_RS00685	SM00346	helix_turn_helix isocitrate lyase regulation
CF57_RS00705	SM00642	Alpha-amylase domain
CF57_RS00710	SM00047	Lysozyme subfamily 2
CF57_RS00715	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS00725	SM00382	ATPases associated with a variety of cellular activities
CF57_RS00790	SM00357	Cold shock protein domain
CF57_RS00795	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS00875	SM00382	ATPases associated with a variety of cellular activities
CF57_RS00880	SM00382	ATPases associated with a variety of cellular activities
CF57_RS00955	SM00028	Tetratricopeptide repeats
CF57_RS00960	SM00052	Putative diguanylate phosphodiesterase
CF57_RS00960	SM00267	diguanylate cyclase
CF57_RS00985	SM00052	Putative diguanylate phosphodiesterase
CF57_RS01010	SM00421	helix_turn_helix, Lux Regulon
CF57_RS01035	SM01235	CF57_RS01035
CF57_RS01050	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS01055	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS01100	SM00421	helix_turn_helix, Lux Regulon
CF57_RS01125	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CF57_RS01210	SM00382	ATPases associated with a variety of cellular activities
CF57_RS01220	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS01255	SM00382	ATPases associated with a variety of cellular activities
CF57_RS01290	SM00382	ATPases associated with a variety of cellular activities
CF57_RS01295	SM00382	ATPases associated with a variety of cellular activities
CF57_RS01370	SM00382	ATPases associated with a variety of cellular activities
CF57_RS01370	SM00962	SRP54-type protein, GTPase domain
CF57_RS01370	SM00963	SRP54-type protein, helical bundle domain
CF57_RS01375	SM00382	ATPases associated with a variety of cellular activities
CF57_RS01420	SM00382	ATPases associated with a variety of cellular activities
CF57_RS01425	SM00382	ATPases associated with a variety of cellular activities
CF57_RS01450	SM00382	ATPases associated with a variety of cellular activities
CF57_RS01500	SM00354	helix_turn _helix lactose operon repressor
CF57_RS01520	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CF57_RS01525	SM00642	Alpha-amylase domain
CF57_RS01530	SM00642	Alpha-amylase domain
CF57_RS01575	SM00450	Rhodanese Homology Domain
CF57_RS01585	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF57_RS01585	SM01134	CF57_RS01585
CF57_RS01590	SM00382	ATPases associated with a variety of cellular activities
CF57_RS01605	SM00421	helix_turn_helix, Lux Regulon
CF57_RS01655	SM00899	CF57_RS01655
CF57_RS01660	SM00316	Ribosomal protein S1-like RNA-binding domain
CF57_RS01660	SM00732	Likely ribonuclease with RNase H fold.
CF57_RS01670	SM00448	cheY-homologous receiver domain
CF57_RS01670	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS01675	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF57_RS01675	SM00387	Histidine kinase-like ATPases
CF57_RS01675	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS01700	SM00363	S4 RNA-binding domain
CF57_RS01745	SM00965	Secretin and TonB N terminus short domain
CF57_RS01825	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS01825	SM00866	CF57_RS01825
CF57_RS01910	SM00100	Cyclic nucleotide-monophosphate binding domain
CF57_RS01910	SM00419	helix_turn_helix, cAMP Regulatory protein
CF57_RS01940	SM00382	ATPases associated with a variety of cellular activities
CF57_RS02005	SM00838	Elongation factor G C-terminus
CF57_RS02005	SM00889	Elongation factor G, domain IV
CF57_RS02015	SM00495	Chitin-binding domain type 3
CF57_RS02110	SM01403	CF57_RS02110
CF57_RS02130	SM01382	CF57_RS02130
CF57_RS02130	SM01383	CF57_RS02130
CF57_RS02145	SM00322	K homology RNA-binding domain
CF57_RS02165	SM01374	CF57_RS02165
CF57_RS02170	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CF57_RS02235	SM00363	S4 RNA-binding domain
CF57_RS02235	SM01390	CF57_RS02235
CF57_RS02240	SM00662	RNA polymerases D
CF57_RS02255	SM00422	helix_turn_helix, mercury resistance
CF57_RS02360	SM00382	ATPases associated with a variety of cellular activities
CF57_RS02375	SM00062	Bacterial periplasmic substrate-binding proteins
CF57_RS02440	SM00878	Biotin carboxylase C-terminal domain
CF57_RS02465	SM00829	Enoylreductase
CF57_RS02470	SM00052	Putative diguanylate phosphodiesterase
CF57_RS02470	SM00267	diguanylate cyclase
CF57_RS02500	SM00316	Ribosomal protein S1-like RNA-binding domain
CF57_RS02555	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CF57_RS02560	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CF57_RS02600	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS02600	SM00895	CF57_RS02600
CF57_RS02605	SM01130	CF57_RS02605
CF57_RS02650	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF57_RS02655	SM00073	Histidine Phosphotransfer domain
CF57_RS02655	SM00091	PAS domain
CF57_RS02655	SM00387	Histidine kinase-like ATPases
CF57_RS02655	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS02655	SM00448	cheY-homologous receiver domain
CF57_RS02700	SM00382	ATPases associated with a variety of cellular activities
CF57_RS02730	SM00382	ATPases associated with a variety of cellular activities
CF57_RS02805	SM01103	CF57_RS02805
CF57_RS02815	SM00382	ATPases associated with a variety of cellular activities
CF57_RS02860	SM00316	Ribosomal protein S1-like RNA-binding domain
CF57_RS02880	SM01387	CF57_RS02880
CF57_RS02885	SM00316	Ribosomal protein S1-like RNA-binding domain
CF57_RS02885	SM00322	K homology RNA-binding domain
CF57_RS02890	SM00028	Tetratricopeptide repeats
CF57_RS02895	SM00487	DEAD-like helicases superfamily
CF57_RS02895	SM00490	helicase superfamily c-terminal domain
CF57_RS02935	SM00465	GIY-YIG type nucleases (URI domain)
CF57_RS02960	SM00749	bacterial OsmY and nodulation domain
CF57_RS03065	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF57_RS03065	SM01134	CF57_RS03065
CF57_RS03080	SM00858	CF57_RS03080
CF57_RS03230	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS03230	SM00895	CF57_RS03230
CF57_RS03265	SM00858	CF57_RS03265
CF57_RS03315	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS03345	SM01038	Beta galactosidase small chain
CF57_RS03350	SM00354	helix_turn _helix lactose operon repressor
CF57_RS03365	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CF57_RS03365	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CF57_RS03395	SM00400	zinc finger
CF57_RS03395	SM00493	CF57_RS03395
CF57_RS03395	SM00766	DNA primase DnaG DnaB-binding
CF57_RS03430	SM01207	CF57_RS03430
CF57_RS03435	SM00905	Dihydroneopterin aldolase
CF57_RS03450	SM00287	Bacterial SH3 domain homologues
CF57_RS03460	SM01118	CF57_RS03460
CF57_RS03485	SM00244	prohibitin homologues
CF57_RS03585	SM00387	Histidine kinase-like ATPases
CF57_RS03585	SM00433	TopoisomeraseII
CF57_RS03605	SM00387	Histidine kinase-like ATPases
CF57_RS03605	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS03610	SM00448	cheY-homologous receiver domain
CF57_RS03610	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS03620	SM00871	Bacterial transcription activator, effector binding domain
CF57_RS03630	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS03640	SM00434	DNA Topoisomerase IV
CF57_RS03645	SM00563	Phosphate acyltransferases
CF57_RS03655	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF57_RS03685	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS03865	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS03865	SM00895	CF57_RS03865
CF57_RS03930	SM00382	ATPases associated with a variety of cellular activities
CF57_RS03970	SM00478	endonuclease III
CF57_RS03970	SM00525	CF57_RS03970
CF57_RS03995	SM00870	CF57_RS03995
CF57_RS04005	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF57_RS04015	SM01152	CF57_RS04015
CF57_RS04030	SM00382	ATPases associated with a variety of cellular activities
CF57_RS04035	SM00732	Likely ribonuclease with RNase H fold.
CF57_RS04060	SM00731	SprT homologues.
CF57_RS04105	SM00861	Transketolase, pyrimidine binding domain
CF57_RS04140	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CF57_RS04230	SM01011	Aminopeptidase P, N-terminal domain
CF57_RS04265	SM01022	CF57_RS04265
CF57_RS04310	SM00937	CF57_RS04310
CF57_RS04375	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CF57_RS04380	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CF57_RS04435	SM00091	PAS domain
CF57_RS04435	SM00382	ATPases associated with a variety of cellular activities
CF57_RS04445	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CF57_RS04450	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CF57_RS04455	SM00257	Lysin motif
CF57_RS04515	SM00421	helix_turn_helix, Lux Regulon
CF57_RS04540	SM00421	helix_turn_helix, Lux Regulon
CF57_RS04555	SM00028	Tetratricopeptide repeats
CF57_RS04555	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS04640	SM00354	helix_turn _helix lactose operon repressor
CF57_RS04645	SM00563	Phosphate acyltransferases
CF57_RS04670	SM00927	DNA mismatch repair enzyme MutH
CF57_RS04690	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CF57_RS04740	SM00382	ATPases associated with a variety of cellular activities
CF57_RS04750	SM00646	CF57_RS04750
CF57_RS04770	SM00925	MltA specific insert domain
CF57_RS04810	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF57_RS04810	SM01134	CF57_RS04810
CF57_RS04835	SM01007	Class II Aldolase and Adducin N-terminal domain
CF57_RS04845	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CF57_RS04845	SM00475	5'-3' exonuclease
CF57_RS04900	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CF57_RS04905	SM00073	Histidine Phosphotransfer domain
CF57_RS04905	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF57_RS04905	SM00387	Histidine kinase-like ATPases
CF57_RS04905	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS04905	SM00448	cheY-homologous receiver domain
CF57_RS04915	SM00954	Region found in RelA / SpoT proteins
CF57_RS04920	SM00966	SpoVT / AbrB like domain 
CF57_RS04940	SM01192	CF57_RS04940
CF57_RS04940	SM01193	CF57_RS04940
CF57_RS04985	SM00893	Electron transfer flavoprotein domain
CF57_RS05045	SM00490	helicase superfamily c-terminal domain
CF57_RS05070	SM01101	CF57_RS05070
CF57_RS05140	SM00257	Lysin motif
CF57_RS05160	SM01007	Class II Aldolase and Adducin N-terminal domain
CF57_RS05175	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF57_RS05175	SM01134	CF57_RS05175
CF57_RS05185	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CF57_RS05185	SM00534	ATPase domain of DNA mismatch repair MUTS family
CF57_RS05200	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CF57_RS05200	SM00382	ATPases associated with a variety of cellular activities
CF57_RS05290	SM00354	helix_turn _helix lactose operon repressor
CF57_RS05310	SM00849	Metallo-beta-lactamase superfamily
CF57_RS05315	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CF57_RS05315	SM00382	ATPases associated with a variety of cellular activities
CF57_RS05325	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF57_RS05325	SM01134	CF57_RS05325
CF57_RS05365	SM00382	ATPases associated with a variety of cellular activities
CF57_RS05380	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CF57_RS05445	SM00347	helix_turn_helix multiple antibiotic resistance protein
CF57_RS05475	SM00382	ATPases associated with a variety of cellular activities
CF57_RS05515	SM00528	Domain in histone-like proteins of HNS family
CF57_RS05520	SM00450	Rhodanese Homology Domain
CF57_RS05525	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CF57_RS05535	SM00257	Lysin motif
CF57_RS05535	SM00749	bacterial OsmY and nodulation domain
CF57_RS05540	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS05540	SM00895	CF57_RS05540
CF57_RS05575	SM00642	Alpha-amylase domain
CF57_RS05590	SM00487	DEAD-like helicases superfamily
CF57_RS05605	SM00470	ParB-like nuclease domain
CF57_RS05610	SM00470	ParB-like nuclease domain
CF57_RS05660	SM01091	Transporter associated domain
CF57_RS05670	SM00382	ATPases associated with a variety of cellular activities
CF57_RS05670	SM00962	SRP54-type protein, GTPase domain
CF57_RS05670	SM00963	SRP54-type protein, helical bundle domain
CF57_RS05700	SM00267	diguanylate cyclase
CF57_RS05720	SM00830	Chorismate mutase type II
CF57_RS05725	SM00830	Chorismate mutase type II
CF57_RS05745	SM00363	S4 RNA-binding domain
CF57_RS05755	SM00382	ATPases associated with a variety of cellular activities
CF57_RS05755	SM01086	C-terminal, D2-small domain, of ClpB protein
CF57_RS05805	SM00881	CoA binding domain
CF57_RS05810	SM01144	CF57_RS05810
CF57_RS05825	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CF57_RS05830	SM00986	Uracil DNA glycosylase superfamily
CF57_RS05830	SM00987	UreE urease accessory protein, C-terminal domain 
CF57_RS05855	SM00487	DEAD-like helicases superfamily
CF57_RS05855	SM00490	helicase superfamily c-terminal domain
CF57_RS05905	SM00358	Double-stranded RNA binding motif
CF57_RS05905	SM00535	Ribonuclease III family
CF57_RS05965	SM00062	Bacterial periplasmic substrate-binding proteins
CF57_RS05970	SM01211	CF57_RS05970
CF57_RS05975	SM00387	Histidine kinase-like ATPases
CF57_RS05975	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS05985	SM00382	ATPases associated with a variety of cellular activities
CF57_RS05985	SM00448	cheY-homologous receiver domain
CF57_RS05990	SM00938	Nitrogen regulatory protein P-II
CF57_RS06010	SM00028	Tetratricopeptide repeats
CF57_RS06020	SM00382	ATPases associated with a variety of cellular activities
CF57_RS06030	SM00829	Enoylreductase
CF57_RS06120	SM00271	DnaJ molecular chaperone homology domain
CF57_RS06150	SM00450	Rhodanese Homology Domain
CF57_RS06155	SM01359	CF57_RS06155
CF57_RS06155	SM01360	CF57_RS06155
CF57_RS06165	SM00562	CF57_RS06165
CF57_RS06175	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS06195	SM00564	beta-propeller repeat
CF57_RS06215	SM00116	Domain in cystathionine beta-synthase and other proteins.
CF57_RS06215	SM01240	CF57_RS06215
CF57_RS06245	SM00052	Putative diguanylate phosphodiesterase
CF57_RS06245	SM00267	diguanylate cyclase
CF57_RS06305	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CF57_RS06305	SM00382	ATPases associated with a variety of cellular activities
CF57_RS06375	SM01130	CF57_RS06375
CF57_RS06435	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF57_RS06435	SM00387	Histidine kinase-like ATPases
CF57_RS06455	SM00861	Transketolase, pyrimidine binding domain
CF57_RS06465	SM00919	Malic enzyme, NAD binding domain
CF57_RS06465	SM01274	CF57_RS06465
CF57_RS06470	SM00877	CF57_RS06470
CF57_RS06495	SM00877	CF57_RS06495
CF57_RS06540	SM00877	CF57_RS06540
CF57_RS06545	SM00877	CF57_RS06545
CF57_RS06550	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS06560	SM00646	CF57_RS06560
CF57_RS06605	SM00822	CF57_RS06605
CF57_RS06625	SM00382	ATPases associated with a variety of cellular activities
CF57_RS06635	SM00773	Proposed nucleic acid binding domain
CF57_RS06675	SM00771	ZipA, C-terminal domain (FtsZ-binding)
CF57_RS06680	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CF57_RS06680	SM00292	breast cancer carboxy-terminal domain
CF57_RS06680	SM00532	Ligase N family
CF57_RS06770	SM00052	Putative diguanylate phosphodiesterase
CF57_RS06770	SM00267	diguanylate cyclase
CF57_RS06830	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS06835	SM00448	cheY-homologous receiver domain
CF57_RS06835	SM00850	LytTr DNA-binding domain
CF57_RS06840	SM00387	Histidine kinase-like ATPases
CF57_RS06895	SM00062	Bacterial periplasmic substrate-binding proteins
CF57_RS06895	SM00073	Histidine Phosphotransfer domain
CF57_RS06895	SM00387	Histidine kinase-like ATPases
CF57_RS06895	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS06895	SM00448	cheY-homologous receiver domain
CF57_RS06900	SM00421	helix_turn_helix, Lux Regulon
CF57_RS06900	SM00448	cheY-homologous receiver domain
CF57_RS07000	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS07020	SM00382	ATPases associated with a variety of cellular activities
CF57_RS07370	SM00463	Small MutS-related domain
CF57_RS07410	SM00825	Beta-ketoacyl synthase
CF57_RS07430	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CF57_RS07475	SM00062	Bacterial periplasmic substrate-binding proteins
CF57_RS07480	SM00062	Bacterial periplasmic substrate-binding proteins
CF57_RS07495	SM00382	ATPases associated with a variety of cellular activities
CF57_RS07510	SM00905	Dihydroneopterin aldolase
CF57_RS07575	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CF57_RS07610	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CF57_RS07615	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF57_RS07615	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CF57_RS07670	SM00849	Metallo-beta-lactamase superfamily
CF57_RS07705	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CF57_RS07770	SM00852	Probable molybdopterin binding domain
CF57_RS07775	SM00346	helix_turn_helix isocitrate lyase regulation
CF57_RS07780	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CF57_RS07855	SM00869	Autotransporter beta-domain
CF57_RS07865	SM00434	DNA Topoisomerase IV
CF57_RS07880	SM01359	CF57_RS07880
CF57_RS07880	SM01360	CF57_RS07880
CF57_RS07895	SM00387	Histidine kinase-like ATPases
CF57_RS07895	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS07895	SM00448	cheY-homologous receiver domain
CF57_RS07900	SM00421	helix_turn_helix, Lux Regulon
CF57_RS07900	SM00448	cheY-homologous receiver domain
CF57_RS07905	SM00387	Histidine kinase-like ATPases
CF57_RS07930	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS07940	SM00382	ATPases associated with a variety of cellular activities
CF57_RS07970	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF57_RS07995	SM00382	ATPases associated with a variety of cellular activities
CF57_RS08035	SM00421	helix_turn_helix, Lux Regulon
CF57_RS08035	SM00448	cheY-homologous receiver domain
CF57_RS08075	SM00487	DEAD-like helicases superfamily
CF57_RS08075	SM00490	helicase superfamily c-terminal domain
CF57_RS08080	SM00363	S4 RNA-binding domain
CF57_RS08095	SM00382	ATPases associated with a variety of cellular activities
CF57_RS08115	SM00052	Putative diguanylate phosphodiesterase
CF57_RS08125	SM00014	Acid phosphatase homologues
CF57_RS08130	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CF57_RS08140	SM00841	Elongation factor P, C-terminal
CF57_RS08140	SM01185	CF57_RS08140
CF57_RS08185	SM00100	Cyclic nucleotide-monophosphate binding domain
CF57_RS08205	SM00518	AP endonuclease family 2
CF57_RS08255	SM00354	helix_turn _helix lactose operon repressor
CF57_RS08265	SM00382	ATPases associated with a variety of cellular activities
CF57_RS08350	SM01217	CF57_RS08350
CF57_RS08365	SM00382	ATPases associated with a variety of cellular activities
CF57_RS08380	SM00422	helix_turn_helix, mercury resistance
CF57_RS08385	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CF57_RS08390	SM00448	cheY-homologous receiver domain
CF57_RS08390	SM00850	LytTr DNA-binding domain
CF57_RS08410	SM00327	von Willebrand factor (vWF) type A domain
CF57_RS08420	SM00382	ATPases associated with a variety of cellular activities
CF57_RS08435	SM00773	Proposed nucleic acid binding domain
CF57_RS08510	SM00641	Glycosyl hydrolases family 25
CF57_RS08515	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS08515	SM00866	CF57_RS08515
CF57_RS08535	SM01133	CF57_RS08535
CF57_RS08580	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF57_RS08580	SM01134	CF57_RS08580
CF57_RS08585	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CF57_RS08615	SM00448	cheY-homologous receiver domain
CF57_RS08615	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS08620	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF57_RS08620	SM00387	Histidine kinase-like ATPases
CF57_RS08620	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS08645	SM00327	von Willebrand factor (vWF) type A domain
CF57_RS08665	SM00478	endonuclease III
CF57_RS08665	SM01009	AlkA N-terminal domain
CF57_RS08670	SM00052	Putative diguanylate phosphodiesterase
CF57_RS08670	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CF57_RS08670	SM00091	PAS domain
CF57_RS08670	SM00267	diguanylate cyclase
CF57_RS08690	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS08700	SM00116	Domain in cystathionine beta-synthase and other proteins.
CF57_RS08700	SM01091	Transporter associated domain
CF57_RS08710	SM00014	Acid phosphatase homologues
CF57_RS08725	SM00226	Low molecular weight phosphatase family
CF57_RS08745	SM01350	CF57_RS08745
CF57_RS08775	SM00382	ATPases associated with a variety of cellular activities
CF57_RS08780	SM00220	Serine/Threonine protein kinases, catalytic domain
CF57_RS08875	SM00479	CF57_RS08875
CF57_RS08880	SM00936	Penicillin-binding protein 5, C-terminal domain 
CF57_RS08885	SM00871	Bacterial transcription activator, effector binding domain
CF57_RS09015	SM00634	Bacterial Ig-like domain (group 1)
CF57_RS09060	SM00095	Transthyretin
CF57_RS09065	SM00448	cheY-homologous receiver domain
CF57_RS09065	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS09070	SM00387	Histidine kinase-like ATPases
CF57_RS09070	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS09100	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CF57_RS09180	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS09190	SM01321	CF57_RS09190
CF57_RS09220	SM00642	Alpha-amylase domain
CF57_RS09255	SM00062	Bacterial periplasmic substrate-binding proteins
CF57_RS09255	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CF57_RS09270	SM00382	ATPases associated with a variety of cellular activities
CF57_RS09275	SM00421	helix_turn_helix, Lux Regulon
CF57_RS09290	SM00421	helix_turn_helix, Lux Regulon
CF57_RS09290	SM00448	cheY-homologous receiver domain
CF57_RS09295	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CF57_RS09295	SM00465	GIY-YIG type nucleases (URI domain)
CF57_RS09365	SM00382	ATPases associated with a variety of cellular activities
CF57_RS09410	SM00073	Histidine Phosphotransfer domain
CF57_RS09410	SM00260	Two component signalling adaptor domain
CF57_RS09410	SM00387	Histidine kinase-like ATPases
CF57_RS09410	SM01231	CF57_RS09410
CF57_RS09420	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CF57_RS09420	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF57_RS09420	SM00319	Homologues of the ligand binding domain of Tar
CF57_RS09430	SM00138	Methyltransferase, chemotaxis proteins 
CF57_RS09435	SM00448	cheY-homologous receiver domain
CF57_RS09440	SM00448	cheY-homologous receiver domain
CF57_RS09470	SM00836	DALR anticodon binding domain
CF57_RS09470	SM01016	Arginyl tRNA synthetase N terminal dom
CF57_RS09620	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CF57_RS09625	SM00382	ATPases associated with a variety of cellular activities
CF57_RS09635	SM00382	ATPases associated with a variety of cellular activities
CF57_RS09645	SM00257	Lysin motif
CF57_RS09715	SM00479	CF57_RS09715
CF57_RS09780	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CF57_RS09785	SM00945	ProQ/FINO family
CF57_RS09790	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CF57_RS09790	SM00245	tail specific protease
CF57_RS09805	SM00346	helix_turn_helix isocitrate lyase regulation
CF57_RS09835	SM00357	Cold shock protein domain
CF57_RS09880	SM01091	Transporter associated domain
CF57_RS09885	SM00052	Putative diguanylate phosphodiesterase
CF57_RS09925	SM00487	DEAD-like helicases superfamily
CF57_RS09925	SM00491	CF57_RS09925
CF57_RS09945	SM00341	Helicase and RNase D C-terminal
CF57_RS09945	SM00474	3'-5' exonuclease
CF57_RS09965	SM01329	CF57_RS09965
CF57_RS10000	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CF57_RS10000	SM00267	diguanylate cyclase
CF57_RS10020	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS10040	SM00267	diguanylate cyclase
CF57_RS10045	SM00267	diguanylate cyclase
CF57_RS10055	SM00763	PrkA AAA domain
CF57_RS10075	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CF57_RS10110	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF57_RS10110	SM01134	CF57_RS10110
CF57_RS10125	SM00870	CF57_RS10125
CF57_RS10155	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CF57_RS10155	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CF57_RS10155	SM00493	CF57_RS10155
CF57_RS10165	SM00671	Sel1-like repeats.
CF57_RS10170	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CF57_RS10190	SM00450	Rhodanese Homology Domain
CF57_RS10195	SM00382	ATPases associated with a variety of cellular activities
CF57_RS10270	SM00465	GIY-YIG type nucleases (URI domain)
CF57_RS10305	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS10320	SM01060	CF57_RS10320
CF57_RS10405	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CF57_RS10435	SM00873	B3/4 domain
CF57_RS10435	SM00874	tRNA synthetase B5 domain
CF57_RS10435	SM00896	Ferredoxin-fold anticodon binding domain
CF57_RS10440	SM00411	bacterial (prokaryotic) histone like domain
CF57_RS10455	SM00382	ATPases associated with a variety of cellular activities
CF57_RS10515	SM00893	Electron transfer flavoprotein domain
CF57_RS10520	SM00893	Electron transfer flavoprotein domain
CF57_RS10530	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS10540	SM00882	Coenzyme A transferase
CF57_RS10600	SM00382	ATPases associated with a variety of cellular activities
CF57_RS10620	SM00257	Lysin motif
CF57_RS10645	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
CF57_RS10720	SM00354	helix_turn _helix lactose operon repressor
CF57_RS10750	SM00382	ATPases associated with a variety of cellular activities
CF57_RS10750	SM00487	DEAD-like helicases superfamily
CF57_RS10750	SM00490	helicase superfamily c-terminal domain
CF57_RS10755	SM00479	CF57_RS10755
CF57_RS10805	SM00347	helix_turn_helix multiple antibiotic resistance protein
CF57_RS10830	SM00363	S4 RNA-binding domain
CF57_RS10855	SM00478	endonuclease III
CF57_RS10855	SM00525	CF57_RS10855
CF57_RS10865	SM00900	CF57_RS10865
CF57_RS10925	SM00354	helix_turn _helix lactose operon repressor
CF57_RS10990	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF57_RS10990	SM00387	Histidine kinase-like ATPases
CF57_RS10990	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS10995	SM00448	cheY-homologous receiver domain
CF57_RS10995	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS11020	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CF57_RS11020	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CF57_RS11100	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF57_RS11105	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF57_RS11135	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CF57_RS11170	SM00507	HNH nucleases
CF57_RS11180	SM00357	Cold shock protein domain
CF57_RS11185	SM00357	Cold shock protein domain
CF57_RS11210	SM00357	Cold shock protein domain
CF57_RS11260	SM00857	Resolvase, N terminal domain
CF57_RS11285	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS11285	SM00895	CF57_RS11285
CF57_RS11310	SM00267	diguanylate cyclase
CF57_RS11335	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS11340	SM00347	helix_turn_helix multiple antibiotic resistance protein
CF57_RS11380	SM00267	diguanylate cyclase
CF57_RS11405	SM01133	CF57_RS11405
CF57_RS11425	SM00382	ATPases associated with a variety of cellular activities
CF57_RS11440	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CF57_RS11440	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF57_RS11445	SM00857	Resolvase, N terminal domain
CF57_RS11485	SM00869	Autotransporter beta-domain
CF57_RS11490	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS11540	SM00382	ATPases associated with a variety of cellular activities
CF57_RS11575	SM00267	diguanylate cyclase
CF57_RS11580	SM00052	Putative diguanylate phosphodiesterase
CF57_RS11580	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CF57_RS11580	SM00091	PAS domain
CF57_RS11580	SM00267	diguanylate cyclase
CF57_RS11605	SM00382	ATPases associated with a variety of cellular activities
CF57_RS11610	SM00382	ATPases associated with a variety of cellular activities
CF57_RS11630	SM00919	Malic enzyme, NAD binding domain
CF57_RS11630	SM01274	CF57_RS11630
CF57_RS11635	SM00829	Enoylreductase
CF57_RS11640	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS11660	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF57_RS11685	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF57_RS11715	SM00903	Flavin reductase like domain
CF57_RS11780	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS11780	SM00895	CF57_RS11780
CF57_RS11785	SM00829	Enoylreductase
CF57_RS11830	SM00382	ATPases associated with a variety of cellular activities
CF57_RS11840	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS11845	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS11865	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS11880	SM01321	CF57_RS11880
CF57_RS11930	SM01150	CF57_RS11930
CF57_RS11940	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CF57_RS11940	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF57_RS11940	SM00319	Homologues of the ligand binding domain of Tar
CF57_RS11970	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CF57_RS11985	SM00382	ATPases associated with a variety of cellular activities
CF57_RS11985	SM00487	DEAD-like helicases superfamily
CF57_RS11985	SM00490	helicase superfamily c-terminal domain
CF57_RS11985	SM00847	Helicase associated domain (HA2)  Add an annotation
CF57_RS11995	SM00195	Dual specificity phosphatase, catalytic domain
CF57_RS11995	SM00404	Protein tyrosine phosphatase, catalytic domain motif
CF57_RS12110	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS12145	SM00890	Domain of unknown function
CF57_RS12165	SM00487	DEAD-like helicases superfamily
CF57_RS12165	SM00490	helicase superfamily c-terminal domain
CF57_RS12180	SM00091	PAS domain
CF57_RS12180	SM00267	diguanylate cyclase
CF57_RS12185	SM00463	Small MutS-related domain
CF57_RS12225	SM00100	Cyclic nucleotide-monophosphate binding domain
CF57_RS12225	SM00419	helix_turn_helix, cAMP Regulatory protein
CF57_RS12275	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CF57_RS12285	SM00091	PAS domain
CF57_RS12285	SM00382	ATPases associated with a variety of cellular activities
CF57_RS12300	SM00354	helix_turn _helix lactose operon repressor
CF57_RS12310	SM00382	ATPases associated with a variety of cellular activities
CF57_RS12355	SM00642	Alpha-amylase domain
CF57_RS12360	SM00450	Rhodanese Homology Domain
CF57_RS12385	SM00382	ATPases associated with a variety of cellular activities
CF57_RS12405	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS12415	SM01230	CF57_RS12415
CF57_RS12450	SM00382	ATPases associated with a variety of cellular activities
CF57_RS12455	SM00382	ATPases associated with a variety of cellular activities
CF57_RS12480	SM00357	Cold shock protein domain
CF57_RS12480	SM00955	CF57_RS12480
CF57_RS12490	SM00052	Putative diguanylate phosphodiesterase
CF57_RS12490	SM00091	PAS domain
CF57_RS12490	SM00267	diguanylate cyclase
CF57_RS12500	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF57_RS12500	SM01134	CF57_RS12500
CF57_RS12515	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CF57_RS12520	SM00028	Tetratricopeptide repeats
CF57_RS12530	SM00014	Acid phosphatase homologues
CF57_RS12600	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CF57_RS12600	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CF57_RS12600	SM00493	CF57_RS12600
CF57_RS12625	SM00822	CF57_RS12625
CF57_RS12635	SM00363	S4 RNA-binding domain
CF57_RS12650	SM00481	DNA polymerase alpha chain like domain
CF57_RS12735	SM00155	Phospholipase D. Active site motifs.
CF57_RS12745	SM00382	ATPases associated with a variety of cellular activities
CF57_RS12750	SM00382	ATPases associated with a variety of cellular activities
CF57_RS12785	SM00528	Domain in histone-like proteins of HNS family
CF57_RS12795	SM00448	cheY-homologous receiver domain
CF57_RS12845	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF57_RS12860	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF57_RS12860	SM00387	Histidine kinase-like ATPases
CF57_RS12865	SM00421	helix_turn_helix, Lux Regulon
CF57_RS12865	SM00448	cheY-homologous receiver domain
CF57_RS12940	SM00937	CF57_RS12940
CF57_RS12960	SM01400	CF57_RS12960
CF57_RS12990	SM00869	Autotransporter beta-domain
CF57_RS12995	SM00091	PAS domain
CF57_RS12995	SM00382	ATPases associated with a variety of cellular activities
CF57_RS13005	SM01120	CF57_RS13005
CF57_RS13045	SM01091	Transporter associated domain
CF57_RS13050	SM01005	Alanine racemase, C-terminal domain
CF57_RS13065	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS13185	SM00052	Putative diguanylate phosphodiesterase
CF57_RS13210	SM00052	Putative diguanylate phosphodiesterase
CF57_RS13210	SM01034	Sensors of blue-light using FAD
CF57_RS13215	SM00422	helix_turn_helix, mercury resistance
CF57_RS13235	SM01329	CF57_RS13235
CF57_RS13265	SM00448	cheY-homologous receiver domain
CF57_RS13265	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS13270	SM00387	Histidine kinase-like ATPases
CF57_RS13275	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
CF57_RS13290	SM00382	ATPases associated with a variety of cellular activities
CF57_RS13335	SM00382	ATPases associated with a variety of cellular activities
CF57_RS13350	SM00487	DEAD-like helicases superfamily
CF57_RS13350	SM00490	helicase superfamily c-terminal domain
CF57_RS13350	SM00982	CF57_RS13350
CF57_RS13350	SM01058	CarD-like/TRCF domain
CF57_RS13355	SM00257	Lysin motif
CF57_RS13445	SM00825	Beta-ketoacyl synthase
CF57_RS13455	SM00822	CF57_RS13455
CF57_RS13460	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CF57_RS13490	SM00363	S4 RNA-binding domain
CF57_RS13500	SM00316	Ribosomal protein S1-like RNA-binding domain
CF57_RS13515	SM00047	Lysozyme subfamily 2
CF57_RS13560	SM00858	CF57_RS13560
CF57_RS13640	SM00867	YceI-like domain 
CF57_RS13645	SM00450	Rhodanese Homology Domain
CF57_RS13700	SM00155	Phospholipase D. Active site motifs.
CF57_RS13705	SM00506	Appr-1"-p processing enzyme
CF57_RS13740	SM00421	helix_turn_helix, Lux Regulon
CF57_RS13770	SM00481	DNA polymerase alpha chain like domain
CF57_RS13910	SM00903	Flavin reductase like domain
CF57_RS13950	SM00271	DnaJ molecular chaperone homology domain
CF57_RS13975	SM00448	cheY-homologous receiver domain
CF57_RS13975	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS13985	SM00073	Histidine Phosphotransfer domain
CF57_RS13985	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF57_RS13985	SM00387	Histidine kinase-like ATPases
CF57_RS13985	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS13985	SM00448	cheY-homologous receiver domain
CF57_RS14005	SM00357	Cold shock protein domain
CF57_RS14010	SM00357	Cold shock protein domain
CF57_RS14045	SM00226	Low molecular weight phosphatase family
CF57_RS14125	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CF57_RS14130	SM00992	Hemimethylated DNA-binding protein YccV like
CF57_RS14135	SM00881	CoA binding domain
CF57_RS14150	SM00851	MGS-like domain
CF57_RS14225	SM00382	ATPases associated with a variety of cellular activities
CF57_RS14230	SM00981	CF57_RS14230
CF57_RS14290	SM00062	Bacterial periplasmic substrate-binding proteins
CF57_RS14305	SM00382	ATPases associated with a variety of cellular activities
CF57_RS14340	SM00849	Metallo-beta-lactamase superfamily
CF57_RS14405	SM00382	ATPases associated with a variety of cellular activities
CF57_RS14410	SM00849	Metallo-beta-lactamase superfamily
CF57_RS14415	SM00411	bacterial (prokaryotic) histone like domain
CF57_RS14420	SM00316	Ribosomal protein S1-like RNA-binding domain
CF57_RS14505	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF57_RS14515	SM00382	ATPases associated with a variety of cellular activities
CF57_RS14525	SM00843	CF57_RS14525
CF57_RS14530	SM00344	helix_turn_helix ASNC type
CF57_RS14540	SM00382	ATPases associated with a variety of cellular activities
CF57_RS14545	SM00382	ATPases associated with a variety of cellular activities
CF57_RS14555	SM00316	Ribosomal protein S1-like RNA-binding domain
CF57_RS14565	SM00382	ATPases associated with a variety of cellular activities
CF57_RS14565	SM01086	C-terminal, D2-small domain, of ClpB protein
CF57_RS14575	SM00357	Cold shock protein domain
CF57_RS14580	SM00382	ATPases associated with a variety of cellular activities
CF57_RS14645	SM00644	CF57_RS14645
CF57_RS14660	SM00382	ATPases associated with a variety of cellular activities
CF57_RS14665	SM00062	Bacterial periplasmic substrate-binding proteins
CF57_RS14665	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CF57_RS14680	SM00062	Bacterial periplasmic substrate-binding proteins
CF57_RS14680	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CF57_RS14705	SM00382	ATPases associated with a variety of cellular activities
CF57_RS14785	SM00014	Acid phosphatase homologues
CF57_RS14790	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF57_RS14790	SM01134	CF57_RS14790
CF57_RS14795	SM00936	Penicillin-binding protein 5, C-terminal domain 
CF57_RS14815	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF57_RS14820	SM00267	diguanylate cyclase
CF57_RS14825	SM00052	Putative diguanylate phosphodiesterase
CF57_RS14845	SM00382	ATPases associated with a variety of cellular activities
CF57_RS14855	SM00852	Probable molybdopterin binding domain
CF57_RS14890	SM00382	ATPases associated with a variety of cellular activities
CF57_RS14905	SM00529	Helix-turn-helix diphteria tox regulatory element
CF57_RS14940	SM00062	Bacterial periplasmic substrate-binding proteins
CF57_RS14940	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CF57_RS14950	SM00382	ATPases associated with a variety of cellular activities
CF57_RS14975	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
CF57_RS15000	SM00487	DEAD-like helicases superfamily
CF57_RS15000	SM00488	CF57_RS15000
CF57_RS15000	SM00491	CF57_RS15000
CF57_RS15010	SM00487	DEAD-like helicases superfamily
CF57_RS15010	SM00490	helicase superfamily c-terminal domain
CF57_RS15025	SM00382	ATPases associated with a variety of cellular activities
CF57_RS15050	SM00155	Phospholipase D. Active site motifs.
CF57_RS15085	SM00852	Probable molybdopterin binding domain
CF57_RS15090	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF57_RS15105	SM00487	DEAD-like helicases superfamily
CF57_RS15105	SM00490	helicase superfamily c-terminal domain
CF57_RS15125	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF57_RS15125	SM00876	Biotin and Thiamin Synthesis associated domain
CF57_RS15360	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS15510	SM00382	ATPases associated with a variety of cellular activities
CF57_RS15540	SM00382	ATPases associated with a variety of cellular activities
CF57_RS15565	SM00855	Phosphoglycerate mutase family
CF57_RS15695	SM00872	Alpha mannosidase, middle domain
CF57_RS15705	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS15705	SM00866	CF57_RS15705
CF57_RS15710	SM00881	CoA binding domain
CF57_RS15725	SM00861	Transketolase, pyrimidine binding domain
CF57_RS15790	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CF57_RS15790	SM01232	CF57_RS15790
CF57_RS15800	SM00797	Allophanate hydrolase subunit 2
CF57_RS15805	SM00796	Allophanate hydrolase subunit 1
CF57_RS15880	SM00387	Histidine kinase-like ATPases
CF57_RS15880	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS15885	SM00448	cheY-homologous receiver domain
CF57_RS15885	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS16045	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF57_RS16060	SM00116	Domain in cystathionine beta-synthase and other proteins.
CF57_RS16060	SM01091	Transporter associated domain
CF57_RS16075	SM00062	Bacterial periplasmic substrate-binding proteins
CF57_RS16090	SM00382	ATPases associated with a variety of cellular activities
CF57_RS16115	SM00671	Sel1-like repeats.
CF57_RS16120	SM00271	DnaJ molecular chaperone homology domain
CF57_RS16130	SM00671	Sel1-like repeats.
CF57_RS16160	SM00855	Phosphoglycerate mutase family
CF57_RS16190	SM00936	Penicillin-binding protein 5, C-terminal domain 
CF57_RS16215	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF57_RS16235	SM00357	Cold shock protein domain
CF57_RS16250	SM00448	cheY-homologous receiver domain
CF57_RS16255	SM00091	PAS domain
CF57_RS16255	SM00387	Histidine kinase-like ATPases
CF57_RS16260	SM00764	Citrate lyase ligase C-terminal domain
CF57_RS16310	SM00829	Enoylreductase
CF57_RS16345	SM00470	ParB-like nuclease domain
CF57_RS16375	SM00822	CF57_RS16375
CF57_RS16415	SM00382	ATPases associated with a variety of cellular activities
CF57_RS16425	SM00823	Phosphopantetheine attachment site
CF57_RS16425	SM00824	Thioesterase
CF57_RS16430	SM00923	MbtH-like protein
CF57_RS16520	SM00448	cheY-homologous receiver domain
CF57_RS16520	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS16525	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF57_RS16525	SM00387	Histidine kinase-like ATPases
CF57_RS16525	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS16570	SM00028	Tetratricopeptide repeats
CF57_RS16580	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS16590	SM00421	helix_turn_helix, Lux Regulon
CF57_RS16590	SM00448	cheY-homologous receiver domain
CF57_RS16635	SM00840	CF57_RS16635
CF57_RS16650	SM01001	AIR carboxylase
CF57_RS16730	SM00346	helix_turn_helix isocitrate lyase regulation
CF57_RS16745	SM00450	Rhodanese Homology Domain
CF57_RS16755	SM00382	ATPases associated with a variety of cellular activities
CF57_RS16765	SM00822	CF57_RS16765
CF57_RS16780	SM00382	ATPases associated with a variety of cellular activities
CF57_RS16785	SM00244	prohibitin homologues
CF57_RS16795	SM00422	helix_turn_helix, mercury resistance
CF57_RS16815	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS16865	SM00387	Histidine kinase-like ATPases
CF57_RS16870	SM00493	CF57_RS16870
CF57_RS16880	SM00382	ATPases associated with a variety of cellular activities
CF57_RS16940	SM01266	CF57_RS16940
CF57_RS16950	SM00052	Putative diguanylate phosphodiesterase
CF57_RS16980	SM00938	Nitrogen regulatory protein P-II
CF57_RS16985	SM00382	ATPases associated with a variety of cellular activities
CF57_RS16990	SM00382	ATPases associated with a variety of cellular activities
CF57_RS16995	SM00344	helix_turn_helix ASNC type
CF57_RS17020	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CF57_RS17030	SM00411	bacterial (prokaryotic) histone like domain
CF57_RS17035	SM00382	ATPases associated with a variety of cellular activities
CF57_RS17035	SM00464	Found in ATP-dependent protease La (LON)
CF57_RS17040	SM00382	ATPases associated with a variety of cellular activities
CF57_RS17040	SM00994	ClpX C4-type zinc finger
CF57_RS17040	SM01086	C-terminal, D2-small domain, of ClpB protein
CF57_RS17120	SM00981	CF57_RS17120
CF57_RS17135	SM00861	Transketolase, pyrimidine binding domain
CF57_RS17190	SM00507	HNH nucleases
CF57_RS17205	SM01323	CF57_RS17205
CF57_RS17225	SM00642	Alpha-amylase domain
CF57_RS17240	SM00091	PAS domain
CF57_RS17240	SM00387	Histidine kinase-like ATPases
CF57_RS17240	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS17245	SM00448	cheY-homologous receiver domain
CF57_RS17245	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS17315	SM00267	diguanylate cyclase
CF57_RS17325	SM00098	Alkaline phosphatase homologues
CF57_RS17380	SM00869	Autotransporter beta-domain
CF57_RS17385	SM01004	Delta-aminolevulinic acid dehydratase
CF57_RS17400	SM00382	ATPases associated with a variety of cellular activities
CF57_RS17405	SM00062	Bacterial periplasmic substrate-binding proteins
CF57_RS17435	SM00829	Enoylreductase
CF57_RS17460	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CF57_RS17485	SM00346	helix_turn_helix isocitrate lyase regulation
CF57_RS17495	SM01038	Beta galactosidase small chain
CF57_RS17505	SM01266	CF57_RS17505
CF57_RS17515	SM01116	CF57_RS17515
CF57_RS17520	SM00947	Carbonic anhydrase
CF57_RS17560	SM00382	ATPases associated with a variety of cellular activities
CF57_RS17585	SM00829	Enoylreductase
CF57_RS17620	SM00248	ankyrin repeats
CF57_RS17635	SM00052	Putative diguanylate phosphodiesterase
CF57_RS17635	SM00421	helix_turn_helix, Lux Regulon
CF57_RS17690	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS17710	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS17710	SM00871	Bacterial transcription activator, effector binding domain
CF57_RS17715	SM00634	Bacterial Ig-like domain (group 1)
CF57_RS17740	SM00421	helix_turn_helix, Lux Regulon
CF57_RS17785	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CF57_RS17790	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CF57_RS17850	SM00507	HNH nucleases
CF57_RS17895	SM00507	HNH nucleases
CF57_RS17900	SM01252	CF57_RS17900
CF57_RS17940	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS17995	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CF57_RS18200	SM00382	ATPases associated with a variety of cellular activities
CF57_RS18225	SM00382	ATPases associated with a variety of cellular activities
CF57_RS18265	SM01321	CF57_RS18265
CF57_RS18355	SM00479	CF57_RS18355
CF57_RS18370	SM00849	Metallo-beta-lactamase superfamily
CF57_RS18375	SM00257	Lysin motif
CF57_RS18435	SM00382	ATPases associated with a variety of cellular activities
CF57_RS18435	SM00930	CF57_RS18435
CF57_RS18480	SM01322	CF57_RS18480
CF57_RS18495	SM00977	TilS substrate C-terminal domain
CF57_RS18515	SM00481	DNA polymerase alpha chain like domain
CF57_RS18545	SM00935	Outer membrane protein (OmpH-like)
CF57_RS18555	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CF57_RS18600	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CF57_RS18625	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CF57_RS18630	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CF57_RS18675	SM00382	ATPases associated with a variety of cellular activities
CF57_RS18695	SM00487	DEAD-like helicases superfamily
CF57_RS18695	SM00490	helicase superfamily c-terminal domain
CF57_RS18695	SM00847	Helicase associated domain (HA2)  Add an annotation
CF57_RS18790	SM00382	ATPases associated with a variety of cellular activities
CF57_RS18795	SM00947	Carbonic anhydrase
CF57_RS18805	SM00564	beta-propeller repeat
CF57_RS18860	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS18860	SM00895	CF57_RS18860
CF57_RS18875	SM00644	CF57_RS18875
CF57_RS18905	SM01240	CF57_RS18905
CF57_RS18935	SM00957	SecA DEAD-like domain
CF57_RS18935	SM00958	SecA preprotein cross-linking domain
CF57_RS18950	SM00864	Tubulin/FtsZ family, GTPase domain
CF57_RS18950	SM00865	Tubulin/FtsZ family, C-terminal domain
CF57_RS18955	SM00842	Cell division protein FtsA
CF57_RS19025	SM00354	helix_turn _helix lactose operon repressor
CF57_RS19055	SM00917	LeuA allosteric (dimerisation) domain
CF57_RS19060	SM01329	CF57_RS19060
CF57_RS19100	SM00382	ATPases associated with a variety of cellular activities
CF57_RS19110	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS19125	SM01007	Class II Aldolase and Adducin N-terminal domain
CF57_RS19130	SM00486	DNA polymerase type-B family
CF57_RS19135	SM00487	DEAD-like helicases superfamily
CF57_RS19135	SM00490	helicase superfamily c-terminal domain
CF57_RS19145	SM00271	DnaJ molecular chaperone homology domain
CF57_RS19165	SM00650	Ribosomal RNA adenine dimethylases
CF57_RS19210	SM00893	Electron transfer flavoprotein domain
CF57_RS19230	SM00893	Electron transfer flavoprotein domain
CF57_RS19275	SM00851	MGS-like domain
CF57_RS19275	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CF57_RS19280	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CF57_RS19325	SM00904	Riboflavin kinase
CF57_RS19395	SM00271	DnaJ molecular chaperone homology domain
CF57_RS19420	SM00852	Probable molybdopterin binding domain
CF57_RS19480	SM00448	cheY-homologous receiver domain
CF57_RS19480	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS19490	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF57_RS19490	SM00387	Histidine kinase-like ATPases
CF57_RS19490	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS19495	SM00448	cheY-homologous receiver domain
CF57_RS19495	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS19505	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS19505	SM00871	Bacterial transcription activator, effector binding domain
CF57_RS19510	SM00855	Phosphoglycerate mutase family
CF57_RS19530	SM00382	ATPases associated with a variety of cellular activities
CF57_RS19540	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS19545	SM00382	ATPases associated with a variety of cellular activities
CF57_RS19565	SM00530	Helix-turn-helix XRE-family like proteins 
CF57_RS19580	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CF57_RS19585	SM01133	CF57_RS19585
CF57_RS19620	SM00749	bacterial OsmY and nodulation domain
CF57_RS19680	SM00421	helix_turn_helix, Lux Regulon
CF57_RS19685	SM00421	helix_turn_helix, Lux Regulon
CF57_RS19705	SM00382	ATPases associated with a variety of cellular activities
CF57_RS19720	SM00829	Enoylreductase
CF57_RS19725	SM00895	CF57_RS19725
CF57_RS19735	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CF57_RS19735	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF57_RS19735	SM00319	Homologues of the ligand binding domain of Tar
CF57_RS19740	SM00347	helix_turn_helix multiple antibiotic resistance protein
CF57_RS19780	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS19790	SM00903	Flavin reductase like domain
CF57_RS19810	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CF57_RS19905	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS19905	SM00895	CF57_RS19905
CF57_RS19985	SM00965	Secretin and TonB N terminus short domain
CF57_RS20005	SM00382	ATPases associated with a variety of cellular activities
CF57_RS20090	SM00382	ATPases associated with a variety of cellular activities
CF57_RS20140	SM00487	DEAD-like helicases superfamily
CF57_RS20170	SM00966	SpoVT / AbrB like domain 
CF57_RS20385	SM00470	ParB-like nuclease domain
CF57_RS20595	SM00945	ProQ/FINO family
CF57_RS20625	SM00966	SpoVT / AbrB like domain 
CF57_RS20645	SM00422	helix_turn_helix, mercury resistance
CF57_RS20670	SM00422	helix_turn_helix, mercury resistance
CF57_RS20680	SM00052	Putative diguanylate phosphodiesterase
CF57_RS20805	SM00965	Secretin and TonB N terminus short domain
CF57_RS20825	SM00382	ATPases associated with a variety of cellular activities
CF57_RS20845	SM00382	ATPases associated with a variety of cellular activities
CF57_RS20875	SM00829	Enoylreductase
CF57_RS20945	SM00822	CF57_RS20945
CF57_RS20980	SM00831	Cation transporter/ATPase, N-terminus
CF57_RS20985	SM00354	helix_turn _helix lactose operon repressor
CF57_RS20995	SM00642	Alpha-amylase domain
CF57_RS21045	SM00382	ATPases associated with a variety of cellular activities
CF57_RS21085	SM01091	Transporter associated domain
CF57_RS21165	SM00882	Coenzyme A transferase
CF57_RS21220	SM01007	Class II Aldolase and Adducin N-terminal domain
CF57_RS21230	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CF57_RS21255	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF57_RS21255	SM01134	CF57_RS21255
CF57_RS21310	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CF57_RS21315	SM00316	Ribosomal protein S1-like RNA-binding domain
CF57_RS21315	SM00357	Cold shock protein domain
CF57_RS21315	SM00955	CF57_RS21315
CF57_RS21325	SM00788	Adenylosuccinate synthetase
CF57_RS21335	SM00244	prohibitin homologues
CF57_RS21340	SM00244	prohibitin homologues
CF57_RS21360	SM00853	MutL C terminal dimerisation domain
CF57_RS21360	SM01340	CF57_RS21360
CF57_RS21365	SM00646	CF57_RS21365
CF57_RS21400	SM00479	CF57_RS21400
CF57_RS21485	SM00841	Elongation factor P, C-terminal
CF57_RS21485	SM01185	CF57_RS21485
CF57_RS21510	SM00883	Chaperonin 10 Kd subunit
CF57_RS21555	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS21600	SM00091	PAS domain
CF57_RS21600	SM00387	Histidine kinase-like ATPases
CF57_RS21605	SM00448	cheY-homologous receiver domain
CF57_RS21645	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS21655	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS21675	SM00448	cheY-homologous receiver domain
CF57_RS21675	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS21680	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF57_RS21680	SM00387	Histidine kinase-like ATPases
CF57_RS21680	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS21715	SM00382	ATPases associated with a variety of cellular activities
CF57_RS21730	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS21730	SM00866	CF57_RS21730
CF57_RS21755	SM00382	ATPases associated with a variety of cellular activities
CF57_RS21760	SM00382	ATPases associated with a variety of cellular activities
CF57_RS21770	SM00072	Guanylate kinase homologues.
CF57_RS21805	SM00382	ATPases associated with a variety of cellular activities
CF57_RS21825	SM00849	Metallo-beta-lactamase superfamily
CF57_RS21850	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF57_RS21860	SM00671	Sel1-like repeats.
CF57_RS21870	SM00028	Tetratricopeptide repeats
CF57_RS21935	SM00422	helix_turn_helix, mercury resistance
CF57_RS21940	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS21945	SM00052	Putative diguanylate phosphodiesterase
CF57_RS21990	SM01005	Alanine racemase, C-terminal domain
CF57_RS21995	SM00382	ATPases associated with a variety of cellular activities
CF57_RS22000	SM00829	Enoylreductase
CF57_RS22050	SM00563	Phosphate acyltransferases
CF57_RS22085	SM00382	ATPases associated with a variety of cellular activities
CF57_RS22170	SM00363	S4 RNA-binding domain
CF57_RS22185	SM01018	B12 binding domain
CF57_RS22190	SM00346	helix_turn_helix isocitrate lyase regulation
CF57_RS22245	SM00798	AICARFT/IMPCHase bienzyme
CF57_RS22245	SM00851	MGS-like domain
CF57_RS22250	SM01209	CF57_RS22250
CF57_RS22250	SM01210	CF57_RS22250
CF57_RS22255	SM00382	ATPases associated with a variety of cellular activities
CF57_RS22255	SM00448	cheY-homologous receiver domain
CF57_RS22260	SM00387	Histidine kinase-like ATPases
CF57_RS22260	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS22275	SM00411	bacterial (prokaryotic) histone like domain
CF57_RS22330	SM00876	Biotin and Thiamin Synthesis associated domain
CF57_RS22340	SM00663	RNA polymerase I subunit A N-terminus
CF57_RS22365	SM00649	Ribosomal protein L11/L12
CF57_RS22370	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CF57_RS22370	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CF57_RS22490	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CF57_RS22515	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS22645	SM00487	DEAD-like helicases superfamily
CF57_RS22645	SM00490	helicase superfamily c-terminal domain
CF57_RS22650	SM00354	helix_turn _helix lactose operon repressor
CF57_RS22665	SM00382	ATPases associated with a variety of cellular activities
CF57_RS22665	SM01086	C-terminal, D2-small domain, of ClpB protein
CF57_RS22755	SM00448	cheY-homologous receiver domain
CF57_RS22755	SM00862	Transcriptional regulatory protein, C terminal
CF57_RS22760	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF57_RS22760	SM00387	Histidine kinase-like ATPases
CF57_RS22760	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS22790	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS22795	SM00342	helix_turn_helix, arabinose operon control protein
CF57_RS22815	SM01007	Class II Aldolase and Adducin N-terminal domain
CF57_RS22860	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF57_RS22920	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF57_RS22920	SM01134	CF57_RS22920
CF57_RS22935	SM01133	CF57_RS22935
CF57_RS22970	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS22970	SM00866	CF57_RS22970
CF57_RS22985	SM01230	CF57_RS22985
CF57_RS22990	SM00091	PAS domain
CF57_RS22990	SM00387	Histidine kinase-like ATPases
CF57_RS22990	SM00388	His Kinase A (phosphoacceptor) domain
CF57_RS22995	SM00382	ATPases associated with a variety of cellular activities
CF57_RS22995	SM00448	cheY-homologous receiver domain
CF57_RS23005	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF57_RS23020	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CF57_RS23020	SM00474	3'-5' exonuclease
CF57_RS23020	SM00475	5'-3' exonuclease
CF57_RS23020	SM00482	DNA polymerase A domain
CF57_RS23030	SM00563	Phosphate acyltransferases
CF57_RS23130	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CF57_RS23220	SM00341	Helicase and RNase D C-terminal
CF57_RS23220	SM00487	DEAD-like helicases superfamily
CF57_RS23220	SM00490	helicase superfamily c-terminal domain
CF57_RS23220	SM00956	CF57_RS23220
CF57_RS23290	SM01219	CF57_RS23290
CF57_RS23395	SM00984	UDP binding domain
CF57_RS23420	SM00357	Cold shock protein domain
CF57_RS23420	SM00382	ATPases associated with a variety of cellular activities
CF57_RS23420	SM00959	Rho termination factor, N-terminal domain
CF57_RS23435	SM00487	DEAD-like helicases superfamily
CF57_RS23435	SM00490	helicase superfamily c-terminal domain
CF57_RS23510	SM00382	ATPases associated with a variety of cellular activities
CF57_RS23580	SM00798	AICARFT/IMPCHase bienzyme
CF57_RS23580	SM00851	MGS-like domain
CF57_RS23640	SM00354	helix_turn _helix lactose operon repressor
CF57_RS23650	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF57_RS23650	SM00895	CF57_RS23650
CF57_RS23690	SM00155	Phospholipase D. Active site motifs.
CF57_RS23715	SM00857	Resolvase, N terminal domain
CF57_RS23740	SM00354	helix_turn _helix lactose operon repressor
CF57_RS23760	SM00382	ATPases associated with a variety of cellular activities
CF57_RS23775	SM00382	ATPases associated with a variety of cellular activities
CF57_RS23780	SM00327	von Willebrand factor (vWF) type A domain
CF57_RS23790	SM00344	helix_turn_helix ASNC type
CF57_RS23800	SM01228	CF57_RS23800
CF57_RS23845	SM00382	ATPases associated with a variety of cellular activities
CF57_RS23880	SM00382	ATPases associated with a variety of cellular activities
CF57_RS23890	SM01061	CAT RNA binding domain
CF57_RS23990	SM01234	CF57_RS23990
