CF61_RS00005	SM00382	ATPases associated with a variety of cellular activities
CF61_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
CF61_RS00010	SM00480	DNA polymerase III beta subunit
CF61_RS00020	SM00387	Histidine kinase-like ATPases
CF61_RS00020	SM00433	TopoisomeraseII
CF61_RS00045	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS00045	SM00895	CF61_RS00045
CF61_RS00060	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CF61_RS00100	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS00100	SM00866	CF61_RS00100
CF61_RS00170	SM00421	helix_turn_helix, Lux Regulon
CF61_RS00170	SM00448	cheY-homologous receiver domain
CF61_RS00175	SM00387	Histidine kinase-like ATPases
CF61_RS00270	SM00487	DEAD-like helicases superfamily
CF61_RS00270	SM00490	helicase superfamily c-terminal domain
CF61_RS00280	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CF61_RS00280	SM00954	Region found in RelA / SpoT proteins
CF61_RS00285	SM01409	CF61_RS00285
CF61_RS00290	SM00072	Guanylate kinase homologues.
CF61_RS00295	SM00532	Ligase N family
CF61_RS00355	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CF61_RS00355	SM01232	CF61_RS00355
CF61_RS00495	SM00749	bacterial OsmY and nodulation domain
CF61_RS00730	SM00382	ATPases associated with a variety of cellular activities
CF61_RS00730	SM00930	CF61_RS00730
CF61_RS00965	SM00829	Enoylreductase
CF61_RS00990	SM00450	Rhodanese Homology Domain
CF61_RS01010	SM00971	Serine acetyltransferase, N-terminal
CF61_RS01025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS01025	SM00895	CF61_RS01025
CF61_RS01165	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS01170	SM01007	Class II Aldolase and Adducin N-terminal domain
CF61_RS01180	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CF61_RS01215	SM00346	helix_turn_helix isocitrate lyase regulation
CF61_RS01235	SM00642	Alpha-amylase domain
CF61_RS01240	SM00047	Lysozyme subfamily 2
CF61_RS01245	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS01255	SM00382	ATPases associated with a variety of cellular activities
CF61_RS01320	SM00357	Cold shock protein domain
CF61_RS01325	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS01405	SM00382	ATPases associated with a variety of cellular activities
CF61_RS01410	SM00382	ATPases associated with a variety of cellular activities
CF61_RS01485	SM00028	Tetratricopeptide repeats
CF61_RS01490	SM00052	Putative diguanylate phosphodiesterase
CF61_RS01490	SM00267	diguanylate cyclase
CF61_RS01515	SM00052	Putative diguanylate phosphodiesterase
CF61_RS01540	SM00421	helix_turn_helix, Lux Regulon
CF61_RS01565	SM01235	CF61_RS01565
CF61_RS01580	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS01585	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS01630	SM00421	helix_turn_helix, Lux Regulon
CF61_RS01655	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CF61_RS01740	SM00382	ATPases associated with a variety of cellular activities
CF61_RS01750	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS01785	SM00382	ATPases associated with a variety of cellular activities
CF61_RS01820	SM00382	ATPases associated with a variety of cellular activities
CF61_RS01825	SM00382	ATPases associated with a variety of cellular activities
CF61_RS01900	SM00382	ATPases associated with a variety of cellular activities
CF61_RS01900	SM00962	SRP54-type protein, GTPase domain
CF61_RS01900	SM00963	SRP54-type protein, helical bundle domain
CF61_RS01905	SM00382	ATPases associated with a variety of cellular activities
CF61_RS01950	SM00382	ATPases associated with a variety of cellular activities
CF61_RS01955	SM00382	ATPases associated with a variety of cellular activities
CF61_RS01980	SM00382	ATPases associated with a variety of cellular activities
CF61_RS02030	SM00354	helix_turn _helix lactose operon repressor
CF61_RS02050	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CF61_RS02055	SM00642	Alpha-amylase domain
CF61_RS02060	SM00642	Alpha-amylase domain
CF61_RS02105	SM00450	Rhodanese Homology Domain
CF61_RS02115	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF61_RS02115	SM01134	CF61_RS02115
CF61_RS02120	SM00382	ATPases associated with a variety of cellular activities
CF61_RS02135	SM00421	helix_turn_helix, Lux Regulon
CF61_RS02185	SM00899	CF61_RS02185
CF61_RS02190	SM00316	Ribosomal protein S1-like RNA-binding domain
CF61_RS02190	SM00732	Likely ribonuclease with RNase H fold.
CF61_RS02200	SM00448	cheY-homologous receiver domain
CF61_RS02200	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS02205	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF61_RS02205	SM00387	Histidine kinase-like ATPases
CF61_RS02205	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS02230	SM00363	S4 RNA-binding domain
CF61_RS02275	SM00965	Secretin and TonB N terminus short domain
CF61_RS02355	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS02355	SM00866	CF61_RS02355
CF61_RS02440	SM00100	Cyclic nucleotide-monophosphate binding domain
CF61_RS02440	SM00419	helix_turn_helix, cAMP Regulatory protein
CF61_RS02470	SM00382	ATPases associated with a variety of cellular activities
CF61_RS02535	SM00838	Elongation factor G C-terminus
CF61_RS02535	SM00889	Elongation factor G, domain IV
CF61_RS02545	SM00495	Chitin-binding domain type 3
CF61_RS02640	SM01403	CF61_RS02640
CF61_RS02660	SM01382	CF61_RS02660
CF61_RS02660	SM01383	CF61_RS02660
CF61_RS02675	SM00322	K homology RNA-binding domain
CF61_RS02695	SM01374	CF61_RS02695
CF61_RS02700	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CF61_RS02765	SM00363	S4 RNA-binding domain
CF61_RS02765	SM01390	CF61_RS02765
CF61_RS02770	SM00662	RNA polymerases D
CF61_RS02785	SM00422	helix_turn_helix, mercury resistance
CF61_RS02915	SM00382	ATPases associated with a variety of cellular activities
CF61_RS02930	SM00062	Bacterial periplasmic substrate-binding proteins
CF61_RS02995	SM00878	Biotin carboxylase C-terminal domain
CF61_RS03020	SM00829	Enoylreductase
CF61_RS03025	SM00052	Putative diguanylate phosphodiesterase
CF61_RS03025	SM00267	diguanylate cyclase
CF61_RS03055	SM00316	Ribosomal protein S1-like RNA-binding domain
CF61_RS03110	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CF61_RS03115	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CF61_RS03155	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS03155	SM00895	CF61_RS03155
CF61_RS03160	SM01130	CF61_RS03160
CF61_RS03205	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF61_RS03210	SM00073	Histidine Phosphotransfer domain
CF61_RS03210	SM00091	PAS domain
CF61_RS03210	SM00387	Histidine kinase-like ATPases
CF61_RS03210	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS03210	SM00448	cheY-homologous receiver domain
CF61_RS03255	SM00382	ATPases associated with a variety of cellular activities
CF61_RS03285	SM00382	ATPases associated with a variety of cellular activities
CF61_RS03360	SM01103	CF61_RS03360
CF61_RS03370	SM00382	ATPases associated with a variety of cellular activities
CF61_RS03415	SM00316	Ribosomal protein S1-like RNA-binding domain
CF61_RS03435	SM01387	CF61_RS03435
CF61_RS03440	SM00316	Ribosomal protein S1-like RNA-binding domain
CF61_RS03440	SM00322	K homology RNA-binding domain
CF61_RS03445	SM00028	Tetratricopeptide repeats
CF61_RS03450	SM00487	DEAD-like helicases superfamily
CF61_RS03450	SM00490	helicase superfamily c-terminal domain
CF61_RS03490	SM00465	GIY-YIG type nucleases (URI domain)
CF61_RS03515	SM00749	bacterial OsmY and nodulation domain
CF61_RS03620	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF61_RS03620	SM01134	CF61_RS03620
CF61_RS03635	SM00858	CF61_RS03635
CF61_RS03785	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS03785	SM00895	CF61_RS03785
CF61_RS03820	SM00858	CF61_RS03820
CF61_RS03870	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS03900	SM01038	Beta galactosidase small chain
CF61_RS03905	SM00354	helix_turn _helix lactose operon repressor
CF61_RS03920	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CF61_RS03920	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CF61_RS03950	SM00400	zinc finger
CF61_RS03950	SM00493	CF61_RS03950
CF61_RS03950	SM00766	DNA primase DnaG DnaB-binding
CF61_RS03985	SM01207	CF61_RS03985
CF61_RS03990	SM00905	Dihydroneopterin aldolase
CF61_RS04005	SM00287	Bacterial SH3 domain homologues
CF61_RS04015	SM01118	CF61_RS04015
CF61_RS04040	SM00244	prohibitin homologues
CF61_RS04140	SM00387	Histidine kinase-like ATPases
CF61_RS04140	SM00433	TopoisomeraseII
CF61_RS04160	SM00387	Histidine kinase-like ATPases
CF61_RS04160	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS04165	SM00448	cheY-homologous receiver domain
CF61_RS04165	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS04175	SM00871	Bacterial transcription activator, effector binding domain
CF61_RS04185	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS04195	SM00434	DNA Topoisomerase IV
CF61_RS04200	SM00563	Phosphate acyltransferases
CF61_RS04210	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF61_RS04240	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS04450	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS04450	SM00895	CF61_RS04450
CF61_RS04515	SM00382	ATPases associated with a variety of cellular activities
CF61_RS04555	SM00478	endonuclease III
CF61_RS04555	SM00525	CF61_RS04555
CF61_RS04580	SM00870	CF61_RS04580
CF61_RS04590	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF61_RS04600	SM01152	CF61_RS04600
CF61_RS04615	SM00382	ATPases associated with a variety of cellular activities
CF61_RS04620	SM00732	Likely ribonuclease with RNase H fold.
CF61_RS04645	SM00731	SprT homologues.
CF61_RS04690	SM00861	Transketolase, pyrimidine binding domain
CF61_RS04725	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CF61_RS04815	SM01011	Aminopeptidase P, N-terminal domain
CF61_RS04850	SM01022	CF61_RS04850
CF61_RS04895	SM00937	CF61_RS04895
CF61_RS04960	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CF61_RS04965	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CF61_RS05020	SM00091	PAS domain
CF61_RS05020	SM00382	ATPases associated with a variety of cellular activities
CF61_RS05030	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CF61_RS05035	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CF61_RS05040	SM00257	Lysin motif
CF61_RS05095	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS05145	SM00354	helix_turn _helix lactose operon repressor
CF61_RS05150	SM00563	Phosphate acyltransferases
CF61_RS05175	SM00927	DNA mismatch repair enzyme MutH
CF61_RS05195	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CF61_RS05245	SM00382	ATPases associated with a variety of cellular activities
CF61_RS05255	SM00646	CF61_RS05255
CF61_RS05275	SM00925	MltA specific insert domain
CF61_RS05315	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF61_RS05315	SM01134	CF61_RS05315
CF61_RS05340	SM01007	Class II Aldolase and Adducin N-terminal domain
CF61_RS05350	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CF61_RS05350	SM00475	5'-3' exonuclease
CF61_RS05405	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CF61_RS05410	SM00073	Histidine Phosphotransfer domain
CF61_RS05410	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF61_RS05410	SM00387	Histidine kinase-like ATPases
CF61_RS05410	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS05410	SM00448	cheY-homologous receiver domain
CF61_RS05420	SM00954	Region found in RelA / SpoT proteins
CF61_RS05425	SM00966	SpoVT / AbrB like domain 
CF61_RS05445	SM01192	CF61_RS05445
CF61_RS05445	SM01193	CF61_RS05445
CF61_RS05490	SM00893	Electron transfer flavoprotein domain
CF61_RS05550	SM00490	helicase superfamily c-terminal domain
CF61_RS05575	SM01101	CF61_RS05575
CF61_RS05645	SM00257	Lysin motif
CF61_RS05665	SM01007	Class II Aldolase and Adducin N-terminal domain
CF61_RS05680	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF61_RS05680	SM01134	CF61_RS05680
CF61_RS05690	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CF61_RS05690	SM00534	ATPase domain of DNA mismatch repair MUTS family
CF61_RS05705	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CF61_RS05705	SM00382	ATPases associated with a variety of cellular activities
CF61_RS05795	SM00354	helix_turn _helix lactose operon repressor
CF61_RS05815	SM00849	Metallo-beta-lactamase superfamily
CF61_RS05820	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CF61_RS05820	SM00382	ATPases associated with a variety of cellular activities
CF61_RS05830	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF61_RS05830	SM01134	CF61_RS05830
CF61_RS05870	SM00382	ATPases associated with a variety of cellular activities
CF61_RS05885	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CF61_RS05950	SM00347	helix_turn_helix multiple antibiotic resistance protein
CF61_RS05980	SM00382	ATPases associated with a variety of cellular activities
CF61_RS06020	SM00528	Domain in histone-like proteins of HNS family
CF61_RS06025	SM00450	Rhodanese Homology Domain
CF61_RS06030	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CF61_RS06040	SM00257	Lysin motif
CF61_RS06040	SM00749	bacterial OsmY and nodulation domain
CF61_RS06045	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS06045	SM00895	CF61_RS06045
CF61_RS06080	SM00642	Alpha-amylase domain
CF61_RS06095	SM00487	DEAD-like helicases superfamily
CF61_RS06110	SM00470	ParB-like nuclease domain
CF61_RS06115	SM00470	ParB-like nuclease domain
CF61_RS06120	SM00857	Resolvase, N terminal domain
CF61_RS06170	SM01091	Transporter associated domain
CF61_RS06180	SM00382	ATPases associated with a variety of cellular activities
CF61_RS06180	SM00962	SRP54-type protein, GTPase domain
CF61_RS06180	SM00963	SRP54-type protein, helical bundle domain
CF61_RS06210	SM00267	diguanylate cyclase
CF61_RS06230	SM00830	Chorismate mutase type II
CF61_RS06235	SM00830	Chorismate mutase type II
CF61_RS06255	SM00363	S4 RNA-binding domain
CF61_RS06265	SM00382	ATPases associated with a variety of cellular activities
CF61_RS06265	SM01086	C-terminal, D2-small domain, of ClpB protein
CF61_RS06305	SM00155	Phospholipase D. Active site motifs.
CF61_RS06310	SM00881	CoA binding domain
CF61_RS06315	SM01144	CF61_RS06315
CF61_RS06330	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CF61_RS06335	SM00986	Uracil DNA glycosylase superfamily
CF61_RS06335	SM00987	UreE urease accessory protein, C-terminal domain 
CF61_RS06360	SM00487	DEAD-like helicases superfamily
CF61_RS06360	SM00490	helicase superfamily c-terminal domain
CF61_RS06410	SM00358	Double-stranded RNA binding motif
CF61_RS06410	SM00535	Ribonuclease III family
CF61_RS06470	SM00062	Bacterial periplasmic substrate-binding proteins
CF61_RS06475	SM01211	CF61_RS06475
CF61_RS06480	SM00387	Histidine kinase-like ATPases
CF61_RS06480	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS06490	SM00382	ATPases associated with a variety of cellular activities
CF61_RS06490	SM00448	cheY-homologous receiver domain
CF61_RS06495	SM00938	Nitrogen regulatory protein P-II
CF61_RS06515	SM00028	Tetratricopeptide repeats
CF61_RS06525	SM00382	ATPases associated with a variety of cellular activities
CF61_RS06535	SM00829	Enoylreductase
CF61_RS06625	SM00271	DnaJ molecular chaperone homology domain
CF61_RS06655	SM00450	Rhodanese Homology Domain
CF61_RS06660	SM01359	CF61_RS06660
CF61_RS06660	SM01360	CF61_RS06660
CF61_RS06670	SM00562	CF61_RS06670
CF61_RS06680	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS06700	SM00564	beta-propeller repeat
CF61_RS06720	SM00116	Domain in cystathionine beta-synthase and other proteins.
CF61_RS06720	SM01240	CF61_RS06720
CF61_RS06750	SM00052	Putative diguanylate phosphodiesterase
CF61_RS06750	SM00267	diguanylate cyclase
CF61_RS06810	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CF61_RS06810	SM00382	ATPases associated with a variety of cellular activities
CF61_RS06880	SM01130	CF61_RS06880
CF61_RS06940	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF61_RS06940	SM00387	Histidine kinase-like ATPases
CF61_RS06960	SM00861	Transketolase, pyrimidine binding domain
CF61_RS06970	SM00919	Malic enzyme, NAD binding domain
CF61_RS06970	SM01274	CF61_RS06970
CF61_RS06975	SM00877	CF61_RS06975
CF61_RS07000	SM00877	CF61_RS07000
CF61_RS07050	SM00877	CF61_RS07050
CF61_RS07065	SM00877	CF61_RS07065
CF61_RS07070	SM00877	CF61_RS07070
CF61_RS07075	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS07085	SM00646	CF61_RS07085
CF61_RS07130	SM00822	CF61_RS07130
CF61_RS07150	SM00382	ATPases associated with a variety of cellular activities
CF61_RS07160	SM00773	Proposed nucleic acid binding domain
CF61_RS07200	SM00771	ZipA, C-terminal domain (FtsZ-binding)
CF61_RS07205	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CF61_RS07205	SM00292	breast cancer carboxy-terminal domain
CF61_RS07205	SM00532	Ligase N family
CF61_RS07295	SM00052	Putative diguanylate phosphodiesterase
CF61_RS07295	SM00267	diguanylate cyclase
CF61_RS07355	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS07360	SM00448	cheY-homologous receiver domain
CF61_RS07360	SM00850	LytTr DNA-binding domain
CF61_RS07365	SM00387	Histidine kinase-like ATPases
CF61_RS07420	SM00062	Bacterial periplasmic substrate-binding proteins
CF61_RS07420	SM00073	Histidine Phosphotransfer domain
CF61_RS07420	SM00387	Histidine kinase-like ATPases
CF61_RS07420	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS07420	SM00448	cheY-homologous receiver domain
CF61_RS07425	SM00421	helix_turn_helix, Lux Regulon
CF61_RS07425	SM00448	cheY-homologous receiver domain
CF61_RS07525	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS07545	SM00382	ATPases associated with a variety of cellular activities
CF61_RS07895	SM00463	Small MutS-related domain
CF61_RS07935	SM00825	Beta-ketoacyl synthase
CF61_RS07955	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CF61_RS08000	SM00062	Bacterial periplasmic substrate-binding proteins
CF61_RS08005	SM00062	Bacterial periplasmic substrate-binding proteins
CF61_RS08020	SM00382	ATPases associated with a variety of cellular activities
CF61_RS08035	SM00905	Dihydroneopterin aldolase
CF61_RS08100	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CF61_RS08135	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CF61_RS08140	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF61_RS08140	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CF61_RS08195	SM00849	Metallo-beta-lactamase superfamily
CF61_RS08230	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CF61_RS08295	SM00852	Probable molybdopterin binding domain
CF61_RS08300	SM00346	helix_turn_helix isocitrate lyase regulation
CF61_RS08305	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CF61_RS08380	SM00869	Autotransporter beta-domain
CF61_RS08390	SM00434	DNA Topoisomerase IV
CF61_RS08405	SM01359	CF61_RS08405
CF61_RS08405	SM01360	CF61_RS08405
CF61_RS08420	SM00387	Histidine kinase-like ATPases
CF61_RS08420	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS08420	SM00448	cheY-homologous receiver domain
CF61_RS08425	SM00421	helix_turn_helix, Lux Regulon
CF61_RS08425	SM00448	cheY-homologous receiver domain
CF61_RS08430	SM00387	Histidine kinase-like ATPases
CF61_RS08455	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS08465	SM00382	ATPases associated with a variety of cellular activities
CF61_RS08495	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF61_RS08520	SM00382	ATPases associated with a variety of cellular activities
CF61_RS08560	SM00421	helix_turn_helix, Lux Regulon
CF61_RS08560	SM00448	cheY-homologous receiver domain
CF61_RS08600	SM00487	DEAD-like helicases superfamily
CF61_RS08600	SM00490	helicase superfamily c-terminal domain
CF61_RS08605	SM00363	S4 RNA-binding domain
CF61_RS08620	SM00382	ATPases associated with a variety of cellular activities
CF61_RS08640	SM00052	Putative diguanylate phosphodiesterase
CF61_RS08650	SM00014	Acid phosphatase homologues
CF61_RS08655	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CF61_RS08665	SM00841	Elongation factor P, C-terminal
CF61_RS08665	SM01185	CF61_RS08665
CF61_RS08710	SM00100	Cyclic nucleotide-monophosphate binding domain
CF61_RS08730	SM00518	AP endonuclease family 2
CF61_RS08780	SM00354	helix_turn _helix lactose operon repressor
CF61_RS08790	SM00382	ATPases associated with a variety of cellular activities
CF61_RS08875	SM01217	CF61_RS08875
CF61_RS08890	SM00382	ATPases associated with a variety of cellular activities
CF61_RS08905	SM00422	helix_turn_helix, mercury resistance
CF61_RS08910	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CF61_RS08915	SM00448	cheY-homologous receiver domain
CF61_RS08915	SM00850	LytTr DNA-binding domain
CF61_RS08935	SM00327	von Willebrand factor (vWF) type A domain
CF61_RS08945	SM00382	ATPases associated with a variety of cellular activities
CF61_RS08960	SM00773	Proposed nucleic acid binding domain
CF61_RS09035	SM00641	Glycosyl hydrolases family 25
CF61_RS09040	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS09040	SM00866	CF61_RS09040
CF61_RS09060	SM01133	CF61_RS09060
CF61_RS09105	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF61_RS09105	SM01134	CF61_RS09105
CF61_RS09110	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CF61_RS09140	SM00448	cheY-homologous receiver domain
CF61_RS09140	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS09145	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF61_RS09145	SM00387	Histidine kinase-like ATPases
CF61_RS09145	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS09170	SM00327	von Willebrand factor (vWF) type A domain
CF61_RS09190	SM00478	endonuclease III
CF61_RS09190	SM01009	AlkA N-terminal domain
CF61_RS09195	SM00052	Putative diguanylate phosphodiesterase
CF61_RS09195	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CF61_RS09195	SM00091	PAS domain
CF61_RS09195	SM00267	diguanylate cyclase
CF61_RS09215	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS09225	SM00116	Domain in cystathionine beta-synthase and other proteins.
CF61_RS09225	SM01091	Transporter associated domain
CF61_RS09235	SM00014	Acid phosphatase homologues
CF61_RS09250	SM00226	Low molecular weight phosphatase family
CF61_RS09285	SM01350	CF61_RS09285
CF61_RS09315	SM00382	ATPases associated with a variety of cellular activities
CF61_RS09320	SM00220	Serine/Threonine protein kinases, catalytic domain
CF61_RS09415	SM00479	CF61_RS09415
CF61_RS09420	SM00936	Penicillin-binding protein 5, C-terminal domain 
CF61_RS09425	SM00871	Bacterial transcription activator, effector binding domain
CF61_RS09555	SM00634	Bacterial Ig-like domain (group 1)
CF61_RS09600	SM00095	Transthyretin
CF61_RS09605	SM00448	cheY-homologous receiver domain
CF61_RS09605	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS09610	SM00387	Histidine kinase-like ATPases
CF61_RS09610	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS09640	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CF61_RS09720	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS09730	SM01321	CF61_RS09730
CF61_RS09760	SM00642	Alpha-amylase domain
CF61_RS09795	SM00062	Bacterial periplasmic substrate-binding proteins
CF61_RS09795	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CF61_RS09810	SM00382	ATPases associated with a variety of cellular activities
CF61_RS09815	SM00421	helix_turn_helix, Lux Regulon
CF61_RS09830	SM00421	helix_turn_helix, Lux Regulon
CF61_RS09830	SM00448	cheY-homologous receiver domain
CF61_RS09835	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CF61_RS09835	SM00465	GIY-YIG type nucleases (URI domain)
CF61_RS09905	SM00382	ATPases associated with a variety of cellular activities
CF61_RS09950	SM00073	Histidine Phosphotransfer domain
CF61_RS09950	SM00260	Two component signalling adaptor domain
CF61_RS09950	SM00387	Histidine kinase-like ATPases
CF61_RS09950	SM01231	CF61_RS09950
CF61_RS09960	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CF61_RS09960	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF61_RS09960	SM00319	Homologues of the ligand binding domain of Tar
CF61_RS09970	SM00138	Methyltransferase, chemotaxis proteins 
CF61_RS09975	SM00448	cheY-homologous receiver domain
CF61_RS09980	SM00448	cheY-homologous receiver domain
CF61_RS10010	SM00836	DALR anticodon binding domain
CF61_RS10010	SM01016	Arginyl tRNA synthetase N terminal dom
CF61_RS10160	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CF61_RS10165	SM00382	ATPases associated with a variety of cellular activities
CF61_RS10175	SM00382	ATPases associated with a variety of cellular activities
CF61_RS10185	SM00257	Lysin motif
CF61_RS10255	SM00479	CF61_RS10255
CF61_RS10320	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CF61_RS10325	SM00945	ProQ/FINO family
CF61_RS10330	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CF61_RS10330	SM00245	tail specific protease
CF61_RS10345	SM00346	helix_turn_helix isocitrate lyase regulation
CF61_RS10375	SM00357	Cold shock protein domain
CF61_RS10420	SM01091	Transporter associated domain
CF61_RS10425	SM00052	Putative diguanylate phosphodiesterase
CF61_RS10465	SM00487	DEAD-like helicases superfamily
CF61_RS10465	SM00491	CF61_RS10465
CF61_RS10485	SM00341	Helicase and RNase D C-terminal
CF61_RS10485	SM00474	3'-5' exonuclease
CF61_RS10505	SM01329	CF61_RS10505
CF61_RS10540	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CF61_RS10540	SM00267	diguanylate cyclase
CF61_RS10560	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS10580	SM00267	diguanylate cyclase
CF61_RS10585	SM00267	diguanylate cyclase
CF61_RS10595	SM00763	PrkA AAA domain
CF61_RS10615	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CF61_RS10650	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF61_RS10650	SM01134	CF61_RS10650
CF61_RS10665	SM00870	CF61_RS10665
CF61_RS10695	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CF61_RS10695	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CF61_RS10695	SM00493	CF61_RS10695
CF61_RS10705	SM00671	Sel1-like repeats.
CF61_RS10710	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CF61_RS10730	SM00450	Rhodanese Homology Domain
CF61_RS10735	SM00382	ATPases associated with a variety of cellular activities
CF61_RS10810	SM00465	GIY-YIG type nucleases (URI domain)
CF61_RS10845	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS10860	SM01060	CF61_RS10860
CF61_RS10945	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CF61_RS10975	SM00873	B3/4 domain
CF61_RS10975	SM00874	tRNA synthetase B5 domain
CF61_RS10975	SM00896	Ferredoxin-fold anticodon binding domain
CF61_RS10980	SM00411	bacterial (prokaryotic) histone like domain
CF61_RS10995	SM00382	ATPases associated with a variety of cellular activities
CF61_RS11055	SM00893	Electron transfer flavoprotein domain
CF61_RS11060	SM00893	Electron transfer flavoprotein domain
CF61_RS11070	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS11080	SM00882	Coenzyme A transferase
CF61_RS11140	SM00382	ATPases associated with a variety of cellular activities
CF61_RS11160	SM00257	Lysin motif
CF61_RS11185	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
CF61_RS11260	SM00354	helix_turn _helix lactose operon repressor
CF61_RS11290	SM00382	ATPases associated with a variety of cellular activities
CF61_RS11290	SM00487	DEAD-like helicases superfamily
CF61_RS11290	SM00490	helicase superfamily c-terminal domain
CF61_RS11295	SM00479	CF61_RS11295
CF61_RS11345	SM00347	helix_turn_helix multiple antibiotic resistance protein
CF61_RS11370	SM00363	S4 RNA-binding domain
CF61_RS11395	SM00478	endonuclease III
CF61_RS11395	SM00525	CF61_RS11395
CF61_RS11405	SM00900	CF61_RS11405
CF61_RS11465	SM00354	helix_turn _helix lactose operon repressor
CF61_RS11530	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF61_RS11530	SM00387	Histidine kinase-like ATPases
CF61_RS11530	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS11535	SM00448	cheY-homologous receiver domain
CF61_RS11535	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS11560	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CF61_RS11560	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CF61_RS11640	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF61_RS11645	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF61_RS11675	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CF61_RS11710	SM00507	HNH nucleases
CF61_RS11720	SM00357	Cold shock protein domain
CF61_RS11725	SM00357	Cold shock protein domain
CF61_RS11750	SM00357	Cold shock protein domain
CF61_RS11800	SM00857	Resolvase, N terminal domain
CF61_RS11825	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS11825	SM00895	CF61_RS11825
CF61_RS11850	SM00267	diguanylate cyclase
CF61_RS11875	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS11880	SM00347	helix_turn_helix multiple antibiotic resistance protein
CF61_RS11920	SM00267	diguanylate cyclase
CF61_RS11945	SM01133	CF61_RS11945
CF61_RS11965	SM00382	ATPases associated with a variety of cellular activities
CF61_RS11980	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CF61_RS11980	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF61_RS11985	SM00857	Resolvase, N terminal domain
CF61_RS12025	SM00869	Autotransporter beta-domain
CF61_RS12030	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS12075	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS12090	SM00382	ATPases associated with a variety of cellular activities
CF61_RS12125	SM00267	diguanylate cyclase
CF61_RS12130	SM00052	Putative diguanylate phosphodiesterase
CF61_RS12130	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CF61_RS12130	SM00091	PAS domain
CF61_RS12130	SM00267	diguanylate cyclase
CF61_RS12155	SM00382	ATPases associated with a variety of cellular activities
CF61_RS12160	SM00382	ATPases associated with a variety of cellular activities
CF61_RS12180	SM00919	Malic enzyme, NAD binding domain
CF61_RS12180	SM01274	CF61_RS12180
CF61_RS12185	SM00829	Enoylreductase
CF61_RS12190	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS12210	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF61_RS12235	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF61_RS12265	SM00903	Flavin reductase like domain
CF61_RS12330	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS12330	SM00895	CF61_RS12330
CF61_RS12335	SM00829	Enoylreductase
CF61_RS12380	SM00382	ATPases associated with a variety of cellular activities
CF61_RS12390	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS12395	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS12415	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS12430	SM01321	CF61_RS12430
CF61_RS12480	SM01150	CF61_RS12480
CF61_RS12490	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CF61_RS12490	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF61_RS12490	SM00319	Homologues of the ligand binding domain of Tar
CF61_RS12520	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CF61_RS12535	SM00382	ATPases associated with a variety of cellular activities
CF61_RS12535	SM00487	DEAD-like helicases superfamily
CF61_RS12535	SM00490	helicase superfamily c-terminal domain
CF61_RS12535	SM00847	Helicase associated domain (HA2)  Add an annotation
CF61_RS12545	SM00195	Dual specificity phosphatase, catalytic domain
CF61_RS12545	SM00404	Protein tyrosine phosphatase, catalytic domain motif
CF61_RS12660	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS12695	SM00890	Domain of unknown function
CF61_RS12715	SM00487	DEAD-like helicases superfamily
CF61_RS12715	SM00490	helicase superfamily c-terminal domain
CF61_RS12730	SM00091	PAS domain
CF61_RS12730	SM00267	diguanylate cyclase
CF61_RS12735	SM00463	Small MutS-related domain
CF61_RS12775	SM00100	Cyclic nucleotide-monophosphate binding domain
CF61_RS12775	SM00419	helix_turn_helix, cAMP Regulatory protein
CF61_RS12825	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CF61_RS12835	SM00091	PAS domain
CF61_RS12835	SM00382	ATPases associated with a variety of cellular activities
CF61_RS12850	SM00354	helix_turn _helix lactose operon repressor
CF61_RS12860	SM00382	ATPases associated with a variety of cellular activities
CF61_RS12905	SM00642	Alpha-amylase domain
CF61_RS12910	SM00450	Rhodanese Homology Domain
CF61_RS12935	SM00382	ATPases associated with a variety of cellular activities
CF61_RS12955	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS12965	SM01230	CF61_RS12965
CF61_RS13000	SM00382	ATPases associated with a variety of cellular activities
CF61_RS13005	SM00382	ATPases associated with a variety of cellular activities
CF61_RS13030	SM00357	Cold shock protein domain
CF61_RS13030	SM00955	CF61_RS13030
CF61_RS13040	SM00052	Putative diguanylate phosphodiesterase
CF61_RS13040	SM00091	PAS domain
CF61_RS13040	SM00267	diguanylate cyclase
CF61_RS13050	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF61_RS13050	SM01134	CF61_RS13050
CF61_RS13065	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CF61_RS13070	SM00028	Tetratricopeptide repeats
CF61_RS13080	SM00014	Acid phosphatase homologues
CF61_RS13150	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CF61_RS13150	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CF61_RS13150	SM00493	CF61_RS13150
CF61_RS13175	SM00822	CF61_RS13175
CF61_RS13185	SM00363	S4 RNA-binding domain
CF61_RS13200	SM00481	DNA polymerase alpha chain like domain
CF61_RS13285	SM00155	Phospholipase D. Active site motifs.
CF61_RS13295	SM00382	ATPases associated with a variety of cellular activities
CF61_RS13300	SM00382	ATPases associated with a variety of cellular activities
CF61_RS13335	SM00528	Domain in histone-like proteins of HNS family
CF61_RS13345	SM00448	cheY-homologous receiver domain
CF61_RS13395	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF61_RS13410	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF61_RS13410	SM00387	Histidine kinase-like ATPases
CF61_RS13415	SM00421	helix_turn_helix, Lux Regulon
CF61_RS13415	SM00448	cheY-homologous receiver domain
CF61_RS13490	SM00937	CF61_RS13490
CF61_RS13510	SM01400	CF61_RS13510
CF61_RS13540	SM00869	Autotransporter beta-domain
CF61_RS13545	SM00091	PAS domain
CF61_RS13545	SM00382	ATPases associated with a variety of cellular activities
CF61_RS13555	SM01120	CF61_RS13555
CF61_RS13595	SM01091	Transporter associated domain
CF61_RS13600	SM01005	Alanine racemase, C-terminal domain
CF61_RS13615	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS13735	SM00052	Putative diguanylate phosphodiesterase
CF61_RS13760	SM00052	Putative diguanylate phosphodiesterase
CF61_RS13760	SM01034	Sensors of blue-light using FAD
CF61_RS13765	SM00422	helix_turn_helix, mercury resistance
CF61_RS13785	SM01329	CF61_RS13785
CF61_RS13815	SM00448	cheY-homologous receiver domain
CF61_RS13815	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS13820	SM00387	Histidine kinase-like ATPases
CF61_RS13825	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
CF61_RS13840	SM00382	ATPases associated with a variety of cellular activities
CF61_RS13885	SM00382	ATPases associated with a variety of cellular activities
CF61_RS13900	SM00487	DEAD-like helicases superfamily
CF61_RS13900	SM00490	helicase superfamily c-terminal domain
CF61_RS13900	SM00982	CF61_RS13900
CF61_RS13900	SM01058	CarD-like/TRCF domain
CF61_RS13905	SM00257	Lysin motif
CF61_RS13995	SM00825	Beta-ketoacyl synthase
CF61_RS14005	SM00822	CF61_RS14005
CF61_RS14010	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CF61_RS14040	SM00363	S4 RNA-binding domain
CF61_RS14050	SM00316	Ribosomal protein S1-like RNA-binding domain
CF61_RS14065	SM00047	Lysozyme subfamily 2
CF61_RS14110	SM00858	CF61_RS14110
CF61_RS14190	SM00867	YceI-like domain 
CF61_RS14195	SM00450	Rhodanese Homology Domain
CF61_RS14250	SM00155	Phospholipase D. Active site motifs.
CF61_RS14255	SM00506	Appr-1"-p processing enzyme
CF61_RS14290	SM00421	helix_turn_helix, Lux Regulon
CF61_RS14320	SM00481	DNA polymerase alpha chain like domain
CF61_RS14360	SM00267	diguanylate cyclase
CF61_RS14365	SM00028	Tetratricopeptide repeats
CF61_RS14460	SM00903	Flavin reductase like domain
CF61_RS14500	SM00271	DnaJ molecular chaperone homology domain
CF61_RS14525	SM00448	cheY-homologous receiver domain
CF61_RS14525	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS14535	SM00073	Histidine Phosphotransfer domain
CF61_RS14535	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF61_RS14535	SM00387	Histidine kinase-like ATPases
CF61_RS14535	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS14535	SM00448	cheY-homologous receiver domain
CF61_RS14555	SM00357	Cold shock protein domain
CF61_RS14560	SM00357	Cold shock protein domain
CF61_RS14595	SM00226	Low molecular weight phosphatase family
CF61_RS14675	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CF61_RS14680	SM00992	Hemimethylated DNA-binding protein YccV like
CF61_RS14685	SM00881	CoA binding domain
CF61_RS14700	SM00851	MGS-like domain
CF61_RS14775	SM00382	ATPases associated with a variety of cellular activities
CF61_RS14780	SM00981	CF61_RS14780
CF61_RS14840	SM00062	Bacterial periplasmic substrate-binding proteins
CF61_RS14855	SM00382	ATPases associated with a variety of cellular activities
CF61_RS14890	SM00849	Metallo-beta-lactamase superfamily
CF61_RS14955	SM00382	ATPases associated with a variety of cellular activities
CF61_RS14960	SM00849	Metallo-beta-lactamase superfamily
CF61_RS14965	SM00411	bacterial (prokaryotic) histone like domain
CF61_RS14970	SM00316	Ribosomal protein S1-like RNA-binding domain
CF61_RS15055	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF61_RS15065	SM00382	ATPases associated with a variety of cellular activities
CF61_RS15075	SM00843	CF61_RS15075
CF61_RS15080	SM00344	helix_turn_helix ASNC type
CF61_RS15090	SM00382	ATPases associated with a variety of cellular activities
CF61_RS15095	SM00382	ATPases associated with a variety of cellular activities
CF61_RS15105	SM00316	Ribosomal protein S1-like RNA-binding domain
CF61_RS15115	SM00382	ATPases associated with a variety of cellular activities
CF61_RS15115	SM01086	C-terminal, D2-small domain, of ClpB protein
CF61_RS15125	SM00357	Cold shock protein domain
CF61_RS15130	SM00382	ATPases associated with a variety of cellular activities
CF61_RS15195	SM00644	CF61_RS15195
CF61_RS15210	SM00382	ATPases associated with a variety of cellular activities
CF61_RS15215	SM00062	Bacterial periplasmic substrate-binding proteins
CF61_RS15215	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CF61_RS15230	SM00062	Bacterial periplasmic substrate-binding proteins
CF61_RS15230	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CF61_RS15255	SM00382	ATPases associated with a variety of cellular activities
CF61_RS15335	SM00014	Acid phosphatase homologues
CF61_RS15340	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF61_RS15340	SM01134	CF61_RS15340
CF61_RS15345	SM00936	Penicillin-binding protein 5, C-terminal domain 
CF61_RS15365	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF61_RS15370	SM00267	diguanylate cyclase
CF61_RS15375	SM00052	Putative diguanylate phosphodiesterase
CF61_RS15395	SM00382	ATPases associated with a variety of cellular activities
CF61_RS15405	SM00852	Probable molybdopterin binding domain
CF61_RS15440	SM00382	ATPases associated with a variety of cellular activities
CF61_RS15455	SM00529	Helix-turn-helix diphteria tox regulatory element
CF61_RS15490	SM00062	Bacterial periplasmic substrate-binding proteins
CF61_RS15490	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CF61_RS15500	SM00382	ATPases associated with a variety of cellular activities
CF61_RS15525	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
CF61_RS15550	SM00487	DEAD-like helicases superfamily
CF61_RS15550	SM00488	CF61_RS15550
CF61_RS15550	SM00491	CF61_RS15550
CF61_RS15560	SM00487	DEAD-like helicases superfamily
CF61_RS15560	SM00490	helicase superfamily c-terminal domain
CF61_RS15575	SM00382	ATPases associated with a variety of cellular activities
CF61_RS15600	SM00155	Phospholipase D. Active site motifs.
CF61_RS15635	SM00852	Probable molybdopterin binding domain
CF61_RS15640	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF61_RS15655	SM00487	DEAD-like helicases superfamily
CF61_RS15655	SM00490	helicase superfamily c-terminal domain
CF61_RS15675	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF61_RS15675	SM00876	Biotin and Thiamin Synthesis associated domain
CF61_RS15910	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS16045	SM00382	ATPases associated with a variety of cellular activities
CF61_RS16075	SM00382	ATPases associated with a variety of cellular activities
CF61_RS16100	SM00855	Phosphoglycerate mutase family
CF61_RS16230	SM00872	Alpha mannosidase, middle domain
CF61_RS16240	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS16240	SM00866	CF61_RS16240
CF61_RS16245	SM00881	CoA binding domain
CF61_RS16260	SM00861	Transketolase, pyrimidine binding domain
CF61_RS16325	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CF61_RS16325	SM01232	CF61_RS16325
CF61_RS16335	SM00797	Allophanate hydrolase subunit 2
CF61_RS16340	SM00796	Allophanate hydrolase subunit 1
CF61_RS16415	SM00387	Histidine kinase-like ATPases
CF61_RS16415	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS16420	SM00448	cheY-homologous receiver domain
CF61_RS16420	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS16580	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF61_RS16595	SM00116	Domain in cystathionine beta-synthase and other proteins.
CF61_RS16595	SM01091	Transporter associated domain
CF61_RS16610	SM00062	Bacterial periplasmic substrate-binding proteins
CF61_RS16625	SM00382	ATPases associated with a variety of cellular activities
CF61_RS16650	SM00671	Sel1-like repeats.
CF61_RS16655	SM00271	DnaJ molecular chaperone homology domain
CF61_RS16665	SM00671	Sel1-like repeats.
CF61_RS16695	SM00855	Phosphoglycerate mutase family
CF61_RS16725	SM00936	Penicillin-binding protein 5, C-terminal domain 
CF61_RS16750	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF61_RS16770	SM00357	Cold shock protein domain
CF61_RS16785	SM00448	cheY-homologous receiver domain
CF61_RS16790	SM00091	PAS domain
CF61_RS16790	SM00387	Histidine kinase-like ATPases
CF61_RS16795	SM00764	Citrate lyase ligase C-terminal domain
CF61_RS16845	SM00829	Enoylreductase
CF61_RS16880	SM00470	ParB-like nuclease domain
CF61_RS16910	SM00822	CF61_RS16910
CF61_RS16950	SM00382	ATPases associated with a variety of cellular activities
CF61_RS16960	SM00823	Phosphopantetheine attachment site
CF61_RS16960	SM00824	Thioesterase
CF61_RS16965	SM00923	MbtH-like protein
CF61_RS17050	SM00448	cheY-homologous receiver domain
CF61_RS17050	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS17055	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF61_RS17055	SM00387	Histidine kinase-like ATPases
CF61_RS17055	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS17100	SM00028	Tetratricopeptide repeats
CF61_RS17110	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS17120	SM00421	helix_turn_helix, Lux Regulon
CF61_RS17120	SM00448	cheY-homologous receiver domain
CF61_RS17165	SM00840	CF61_RS17165
CF61_RS17180	SM01001	AIR carboxylase
CF61_RS17260	SM00346	helix_turn_helix isocitrate lyase regulation
CF61_RS17275	SM00450	Rhodanese Homology Domain
CF61_RS17285	SM00382	ATPases associated with a variety of cellular activities
CF61_RS17295	SM00822	CF61_RS17295
CF61_RS17310	SM00382	ATPases associated with a variety of cellular activities
CF61_RS17315	SM00244	prohibitin homologues
CF61_RS17325	SM00422	helix_turn_helix, mercury resistance
CF61_RS17345	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS17395	SM00387	Histidine kinase-like ATPases
CF61_RS17400	SM00493	CF61_RS17400
CF61_RS17410	SM00382	ATPases associated with a variety of cellular activities
CF61_RS17470	SM01266	CF61_RS17470
CF61_RS17480	SM00052	Putative diguanylate phosphodiesterase
CF61_RS17510	SM00938	Nitrogen regulatory protein P-II
CF61_RS17515	SM00382	ATPases associated with a variety of cellular activities
CF61_RS17520	SM00382	ATPases associated with a variety of cellular activities
CF61_RS17525	SM00344	helix_turn_helix ASNC type
CF61_RS17550	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CF61_RS17560	SM00411	bacterial (prokaryotic) histone like domain
CF61_RS17565	SM00382	ATPases associated with a variety of cellular activities
CF61_RS17565	SM00464	Found in ATP-dependent protease La (LON)
CF61_RS17570	SM00382	ATPases associated with a variety of cellular activities
CF61_RS17570	SM00994	ClpX C4-type zinc finger
CF61_RS17570	SM01086	C-terminal, D2-small domain, of ClpB protein
CF61_RS17650	SM00981	CF61_RS17650
CF61_RS17665	SM00861	Transketolase, pyrimidine binding domain
CF61_RS17720	SM00507	HNH nucleases
CF61_RS17735	SM01323	CF61_RS17735
CF61_RS17755	SM00642	Alpha-amylase domain
CF61_RS17770	SM00091	PAS domain
CF61_RS17770	SM00387	Histidine kinase-like ATPases
CF61_RS17770	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS17775	SM00448	cheY-homologous receiver domain
CF61_RS17775	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS17845	SM00267	diguanylate cyclase
CF61_RS17855	SM00098	Alkaline phosphatase homologues
CF61_RS17910	SM00869	Autotransporter beta-domain
CF61_RS17915	SM01004	Delta-aminolevulinic acid dehydratase
CF61_RS17930	SM00382	ATPases associated with a variety of cellular activities
CF61_RS17935	SM00062	Bacterial periplasmic substrate-binding proteins
CF61_RS17965	SM00829	Enoylreductase
CF61_RS17990	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CF61_RS18015	SM00346	helix_turn_helix isocitrate lyase regulation
CF61_RS18025	SM01038	Beta galactosidase small chain
CF61_RS18035	SM01266	CF61_RS18035
CF61_RS18045	SM01116	CF61_RS18045
CF61_RS18050	SM00947	Carbonic anhydrase
CF61_RS18090	SM00382	ATPases associated with a variety of cellular activities
CF61_RS18115	SM00829	Enoylreductase
CF61_RS18150	SM00248	ankyrin repeats
CF61_RS18165	SM00052	Putative diguanylate phosphodiesterase
CF61_RS18165	SM00421	helix_turn_helix, Lux Regulon
CF61_RS18220	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS18240	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS18240	SM00871	Bacterial transcription activator, effector binding domain
CF61_RS18245	SM00634	Bacterial Ig-like domain (group 1)
CF61_RS18270	SM00421	helix_turn_helix, Lux Regulon
CF61_RS18315	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CF61_RS18320	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CF61_RS18380	SM00507	HNH nucleases
CF61_RS18425	SM00507	HNH nucleases
CF61_RS18430	SM01252	CF61_RS18430
CF61_RS18470	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS18525	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CF61_RS18730	SM00382	ATPases associated with a variety of cellular activities
CF61_RS18755	SM00382	ATPases associated with a variety of cellular activities
CF61_RS18795	SM01321	CF61_RS18795
CF61_RS18885	SM00479	CF61_RS18885
CF61_RS18900	SM00849	Metallo-beta-lactamase superfamily
CF61_RS18905	SM00257	Lysin motif
CF61_RS18990	SM01322	CF61_RS18990
CF61_RS19005	SM00977	TilS substrate C-terminal domain
CF61_RS19025	SM00481	DNA polymerase alpha chain like domain
CF61_RS19055	SM00935	Outer membrane protein (OmpH-like)
CF61_RS19065	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CF61_RS19110	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CF61_RS19135	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CF61_RS19140	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CF61_RS19185	SM00382	ATPases associated with a variety of cellular activities
CF61_RS19205	SM00487	DEAD-like helicases superfamily
CF61_RS19205	SM00490	helicase superfamily c-terminal domain
CF61_RS19205	SM00847	Helicase associated domain (HA2)  Add an annotation
CF61_RS19300	SM00382	ATPases associated with a variety of cellular activities
CF61_RS19305	SM00947	Carbonic anhydrase
CF61_RS19315	SM00564	beta-propeller repeat
CF61_RS19370	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS19370	SM00895	CF61_RS19370
CF61_RS19385	SM00644	CF61_RS19385
CF61_RS19415	SM01240	CF61_RS19415
CF61_RS19445	SM00957	SecA DEAD-like domain
CF61_RS19445	SM00958	SecA preprotein cross-linking domain
CF61_RS19460	SM00864	Tubulin/FtsZ family, GTPase domain
CF61_RS19460	SM00865	Tubulin/FtsZ family, C-terminal domain
CF61_RS19465	SM00842	Cell division protein FtsA
CF61_RS19535	SM00354	helix_turn _helix lactose operon repressor
CF61_RS19565	SM00917	LeuA allosteric (dimerisation) domain
CF61_RS19570	SM01329	CF61_RS19570
CF61_RS19610	SM00382	ATPases associated with a variety of cellular activities
CF61_RS19620	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS19635	SM01007	Class II Aldolase and Adducin N-terminal domain
CF61_RS19640	SM00486	DNA polymerase type-B family
CF61_RS19645	SM00487	DEAD-like helicases superfamily
CF61_RS19645	SM00490	helicase superfamily c-terminal domain
CF61_RS19655	SM00271	DnaJ molecular chaperone homology domain
CF61_RS19675	SM00650	Ribosomal RNA adenine dimethylases
CF61_RS19720	SM00893	Electron transfer flavoprotein domain
CF61_RS19740	SM00893	Electron transfer flavoprotein domain
CF61_RS19785	SM00851	MGS-like domain
CF61_RS19785	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CF61_RS19790	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CF61_RS19835	SM00904	Riboflavin kinase
CF61_RS19905	SM00271	DnaJ molecular chaperone homology domain
CF61_RS19930	SM00852	Probable molybdopterin binding domain
CF61_RS19990	SM00448	cheY-homologous receiver domain
CF61_RS19990	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS20000	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF61_RS20000	SM00387	Histidine kinase-like ATPases
CF61_RS20000	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS20005	SM00448	cheY-homologous receiver domain
CF61_RS20005	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS20015	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS20015	SM00871	Bacterial transcription activator, effector binding domain
CF61_RS20020	SM00855	Phosphoglycerate mutase family
CF61_RS20040	SM00382	ATPases associated with a variety of cellular activities
CF61_RS20050	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS20055	SM00382	ATPases associated with a variety of cellular activities
CF61_RS20075	SM00530	Helix-turn-helix XRE-family like proteins 
CF61_RS20090	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CF61_RS20095	SM01133	CF61_RS20095
CF61_RS20145	SM00965	Secretin and TonB N terminus short domain
CF61_RS20165	SM00382	ATPases associated with a variety of cellular activities
CF61_RS20250	SM00382	ATPases associated with a variety of cellular activities
CF61_RS20300	SM00487	DEAD-like helicases superfamily
CF61_RS20330	SM00966	SpoVT / AbrB like domain 
CF61_RS20605	SM00470	ParB-like nuclease domain
CF61_RS20815	SM00945	ProQ/FINO family
CF61_RS20845	SM00966	SpoVT / AbrB like domain 
CF61_RS20865	SM00422	helix_turn_helix, mercury resistance
CF61_RS20890	SM00422	helix_turn_helix, mercury resistance
CF61_RS20900	SM00052	Putative diguanylate phosphodiesterase
CF61_RS21020	SM00965	Secretin and TonB N terminus short domain
CF61_RS21080	SM00421	helix_turn_helix, Lux Regulon
CF61_RS21085	SM00421	helix_turn_helix, Lux Regulon
CF61_RS21105	SM00382	ATPases associated with a variety of cellular activities
CF61_RS21120	SM00829	Enoylreductase
CF61_RS21125	SM00895	CF61_RS21125
CF61_RS21135	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CF61_RS21135	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF61_RS21135	SM00319	Homologues of the ligand binding domain of Tar
CF61_RS21140	SM00347	helix_turn_helix multiple antibiotic resistance protein
CF61_RS21180	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS21190	SM00903	Flavin reductase like domain
CF61_RS21210	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CF61_RS21305	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS21305	SM00895	CF61_RS21305
CF61_RS21380	SM00965	Secretin and TonB N terminus short domain
CF61_RS21400	SM00382	ATPases associated with a variety of cellular activities
CF61_RS21430	SM00829	Enoylreductase
CF61_RS21500	SM00822	CF61_RS21500
CF61_RS21535	SM00831	Cation transporter/ATPase, N-terminus
CF61_RS21540	SM00354	helix_turn _helix lactose operon repressor
CF61_RS21550	SM00642	Alpha-amylase domain
CF61_RS21600	SM00382	ATPases associated with a variety of cellular activities
CF61_RS21640	SM01091	Transporter associated domain
CF61_RS21720	SM00882	Coenzyme A transferase
CF61_RS21775	SM01007	Class II Aldolase and Adducin N-terminal domain
CF61_RS21785	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CF61_RS21810	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF61_RS21810	SM01134	CF61_RS21810
CF61_RS21865	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CF61_RS21870	SM00316	Ribosomal protein S1-like RNA-binding domain
CF61_RS21870	SM00357	Cold shock protein domain
CF61_RS21870	SM00955	CF61_RS21870
CF61_RS21880	SM00788	Adenylosuccinate synthetase
CF61_RS21890	SM00244	prohibitin homologues
CF61_RS21895	SM00244	prohibitin homologues
CF61_RS21915	SM00853	MutL C terminal dimerisation domain
CF61_RS21915	SM01340	CF61_RS21915
CF61_RS21920	SM00646	CF61_RS21920
CF61_RS21955	SM00479	CF61_RS21955
CF61_RS22040	SM00841	Elongation factor P, C-terminal
CF61_RS22040	SM01185	CF61_RS22040
CF61_RS22065	SM00883	Chaperonin 10 Kd subunit
CF61_RS22110	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS22155	SM00091	PAS domain
CF61_RS22155	SM00387	Histidine kinase-like ATPases
CF61_RS22160	SM00448	cheY-homologous receiver domain
CF61_RS22200	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS22210	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS22230	SM00448	cheY-homologous receiver domain
CF61_RS22230	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS22235	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF61_RS22235	SM00387	Histidine kinase-like ATPases
CF61_RS22235	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS22270	SM00382	ATPases associated with a variety of cellular activities
CF61_RS22285	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS22285	SM00866	CF61_RS22285
CF61_RS22310	SM00382	ATPases associated with a variety of cellular activities
CF61_RS22315	SM00382	ATPases associated with a variety of cellular activities
CF61_RS22325	SM00072	Guanylate kinase homologues.
CF61_RS22360	SM00382	ATPases associated with a variety of cellular activities
CF61_RS22380	SM00849	Metallo-beta-lactamase superfamily
CF61_RS22405	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF61_RS22415	SM00671	Sel1-like repeats.
CF61_RS22425	SM00028	Tetratricopeptide repeats
CF61_RS22490	SM00422	helix_turn_helix, mercury resistance
CF61_RS22495	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS22500	SM00052	Putative diguanylate phosphodiesterase
CF61_RS22545	SM01005	Alanine racemase, C-terminal domain
CF61_RS22550	SM00382	ATPases associated with a variety of cellular activities
CF61_RS22555	SM00829	Enoylreductase
CF61_RS22605	SM00563	Phosphate acyltransferases
CF61_RS22640	SM00382	ATPases associated with a variety of cellular activities
CF61_RS22725	SM00363	S4 RNA-binding domain
CF61_RS22740	SM01018	B12 binding domain
CF61_RS22745	SM00346	helix_turn_helix isocitrate lyase regulation
CF61_RS22800	SM00798	AICARFT/IMPCHase bienzyme
CF61_RS22800	SM00851	MGS-like domain
CF61_RS22805	SM01209	CF61_RS22805
CF61_RS22805	SM01210	CF61_RS22805
CF61_RS22810	SM00382	ATPases associated with a variety of cellular activities
CF61_RS22810	SM00448	cheY-homologous receiver domain
CF61_RS22815	SM00387	Histidine kinase-like ATPases
CF61_RS22815	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS22830	SM00411	bacterial (prokaryotic) histone like domain
CF61_RS22885	SM00876	Biotin and Thiamin Synthesis associated domain
CF61_RS22895	SM00663	RNA polymerase I subunit A N-terminus
CF61_RS22920	SM00649	Ribosomal protein L11/L12
CF61_RS22925	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CF61_RS22925	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CF61_RS23045	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CF61_RS23070	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS23200	SM00487	DEAD-like helicases superfamily
CF61_RS23200	SM00490	helicase superfamily c-terminal domain
CF61_RS23205	SM00354	helix_turn _helix lactose operon repressor
CF61_RS23220	SM00382	ATPases associated with a variety of cellular activities
CF61_RS23220	SM01086	C-terminal, D2-small domain, of ClpB protein
CF61_RS23310	SM00448	cheY-homologous receiver domain
CF61_RS23310	SM00862	Transcriptional regulatory protein, C terminal
CF61_RS23315	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF61_RS23315	SM00387	Histidine kinase-like ATPases
CF61_RS23315	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS23345	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS23350	SM00342	helix_turn_helix, arabinose operon control protein
CF61_RS23370	SM01007	Class II Aldolase and Adducin N-terminal domain
CF61_RS23415	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF61_RS23475	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF61_RS23475	SM01134	CF61_RS23475
CF61_RS23490	SM01133	CF61_RS23490
CF61_RS23525	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS23525	SM00866	CF61_RS23525
CF61_RS23540	SM01230	CF61_RS23540
CF61_RS23545	SM00091	PAS domain
CF61_RS23545	SM00387	Histidine kinase-like ATPases
CF61_RS23545	SM00388	His Kinase A (phosphoacceptor) domain
CF61_RS23550	SM00382	ATPases associated with a variety of cellular activities
CF61_RS23550	SM00448	cheY-homologous receiver domain
CF61_RS23560	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF61_RS23575	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CF61_RS23575	SM00474	3'-5' exonuclease
CF61_RS23575	SM00475	5'-3' exonuclease
CF61_RS23575	SM00482	DNA polymerase A domain
CF61_RS23585	SM00563	Phosphate acyltransferases
CF61_RS23685	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CF61_RS23775	SM00341	Helicase and RNase D C-terminal
CF61_RS23775	SM00487	DEAD-like helicases superfamily
CF61_RS23775	SM00490	helicase superfamily c-terminal domain
CF61_RS23775	SM00956	CF61_RS23775
CF61_RS23845	SM01219	CF61_RS23845
CF61_RS23950	SM00984	UDP binding domain
CF61_RS23975	SM00357	Cold shock protein domain
CF61_RS23975	SM00382	ATPases associated with a variety of cellular activities
CF61_RS23975	SM00959	Rho termination factor, N-terminal domain
CF61_RS23990	SM00487	DEAD-like helicases superfamily
CF61_RS23990	SM00490	helicase superfamily c-terminal domain
CF61_RS24065	SM00382	ATPases associated with a variety of cellular activities
CF61_RS24120	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF61_RS24120	SM00895	CF61_RS24120
CF61_RS24130	SM00354	helix_turn _helix lactose operon repressor
CF61_RS24150	SM00382	ATPases associated with a variety of cellular activities
CF61_RS24165	SM00382	ATPases associated with a variety of cellular activities
CF61_RS24170	SM00327	von Willebrand factor (vWF) type A domain
CF61_RS24180	SM00344	helix_turn_helix ASNC type
CF61_RS24190	SM01228	CF61_RS24190
CF61_RS24235	SM00382	ATPases associated with a variety of cellular activities
CF61_RS24270	SM00382	ATPases associated with a variety of cellular activities
CF61_RS24280	SM01061	CAT RNA binding domain
CF61_RS24380	SM01234	CF61_RS24380
