locus-tag class description HER31_RS00005 PF13188 PAS domain HER31_RS00005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS00005 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS00005 PF00989 PAS fold HER31_RS00010 PF00072 Response regulator receiver domain HER31_RS00025 PF00719 Inorganic pyrophosphatase HER31_RS00030 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HER31_RS00035 PF03553 Na+/H+ antiporter family HER31_RS00040 PF01225 Mur ligase family, catalytic domain HER31_RS00040 PF02875 Mur ligase family, glutamate ligase domain HER31_RS00040 PF08245 Mur ligase middle domain HER31_RS00045 PF02441 Flavoprotein HER31_RS00050 PF00156 Phosphoribosyl transferase domain HER31_RS00055 PF13525 Outer membrane lipoprotein HER31_RS00060 PF00849 RNA pseudouridylate synthase HER31_RS00060 PF01479 S4 domain HER31_RS00070 PF10431 C-terminal, D2-small domain, of ClpB protein HER31_RS00070 PF02861 Clp amino terminal domain, pathogenicity island component HER31_RS00070 PF07724 AAA domain (Cdc48 subfamily) HER31_RS00070 PF00004 ATPase family associated with various cellular activities (AAA) HER31_RS00070 PF17871 AAA lid domain HER31_RS00095 PF00111 2Fe-2S iron-sulfur cluster binding domain HER31_RS00100 PF02649 Type I GTP cyclohydrolase folE2 HER31_RS00105 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS00105 PF00072 Response regulator receiver domain HER31_RS00105 PF00989 PAS fold HER31_RS00105 PF01627 Hpt domain HER31_RS00105 PF18415 Histidine kinase receptor ArcB trans-membrane domain HER31_RS00105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS00110 PF00486 Transcriptional regulatory protein, C terminal HER31_RS00110 PF00072 Response regulator receiver domain HER31_RS00115 PF00696 Amino acid kinase family HER31_RS00115 PF01842 ACT domain HER31_RS00120 PF01037 Lrp/AsnC ligand binding domain HER31_RS00125 PF03590 Aspartate-ammonia ligase HER31_RS00130 PF13860 FlgD Ig-like domain HER31_RS00130 PF05922 Peptidase inhibitor I9 HER31_RS00130 PF02225 PA domain HER31_RS00130 PF00082 Subtilase family HER31_RS00135 PF00849 RNA pseudouridylate synthase HER31_RS00145 PF03848 Tellurite resistance protein TehB HER31_RS00165 PF16884 N-terminal domain of oxidoreductase HER31_RS00165 PF00107 Zinc-binding dehydrogenase HER31_RS00170 PF01037 Lrp/AsnC ligand binding domain HER31_RS00175 PF13520 Amino acid permease HER31_RS00180 PF01479 S4 domain HER31_RS00180 PF00849 RNA pseudouridylate synthase HER31_RS00195 PF10688 Bacterial inner membrane protein HER31_RS00200 PF00196 Bacterial regulatory proteins, luxR family HER31_RS00205 PF00196 Bacterial regulatory proteins, luxR family HER31_RS00230 PF03222 Tryptophan/tyrosine permease family HER31_RS00235 PF10459 Peptidase S46 HER31_RS00245 PF08534 Redoxin HER31_RS00250 PF03918 Cytochrome C biogenesis protein HER31_RS00255 PF01578 Cytochrome C assembly protein HER31_RS00255 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HER31_RS00270 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HER31_RS00270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HER31_RS00280 PF00037 4Fe-4S binding domain HER31_RS00280 PF13247 4Fe-4S dicluster domain HER31_RS00285 PF03916 Polysulphide reductase, NrfD HER31_RS00300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HER31_RS00300 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HER31_RS00310 PF00037 4Fe-4S binding domain HER31_RS00310 PF13247 4Fe-4S dicluster domain HER31_RS00315 PF03916 Polysulphide reductase, NrfD HER31_RS00325 PF05048 Periplasmic copper-binding protein (NosD) HER31_RS00330 PF00005 ABC transporter HER31_RS00335 PF12679 ABC-2 family transporter protein HER31_RS00345 PF00378 Enoyl-CoA hydratase/isomerase HER31_RS00350 PF00293 NUDIX domain HER31_RS00360 PF00342 Phosphoglucose isomerase HER31_RS00365 PF00923 Transaldolase/Fructose-6-phosphate aldolase HER31_RS00370 PF01235 Sodium:alanine symporter family HER31_RS00375 PF03883 Peroxide stress protein YaaA HER31_RS00380 PF02225 PA domain HER31_RS00380 PF04389 Peptidase family M28 HER31_RS00385 PF01649 Ribosomal protein S20 HER31_RS00390 PF03023 Lipid II flippase MurJ HER31_RS00395 PF01687 Riboflavin kinase HER31_RS00395 PF06574 FAD synthetase HER31_RS00400 PF06827 Zinc finger found in FPG and IleRS HER31_RS00400 PF08264 Anticodon-binding domain of tRNA HER31_RS00400 PF00133 tRNA synthetases class I (I, L, M and V) HER31_RS00405 PF01252 Signal peptidase (SPase) II HER31_RS00410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HER31_RS00445 PF05567 Neisseria PilC beta-propeller domain HER31_RS00450 PF14245 Type IV pilin PilA HER31_RS00450 PF07963 Prokaryotic N-terminal methylation motif HER31_RS00455 PF00795 Carbon-nitrogen hydrolase HER31_RS00455 PF02540 NAD synthase HER31_RS00460 PF00543 Nitrogen regulatory protein P-II HER31_RS00465 PF00005 ABC transporter HER31_RS00470 PF01061 ABC-2 type transporter HER31_RS00475 PF02390 Putative methyltransferase HER31_RS00520 PF08468 Methyltransferase small domain N-terminal HER31_RS00520 PF05175 Methyltransferase small domain HER31_RS00525 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS00525 PF03707 Bacterial signalling protein N terminal repeat HER31_RS00525 PF00563 EAL domain HER31_RS00535 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HER31_RS00535 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HER31_RS00540 PF04452 RNA methyltransferase HER31_RS00545 PF04231 Endonuclease I HER31_RS00550 PF10263 SprT-like family HER31_RS00560 PF00438 S-adenosylmethionine synthetase, N-terminal domain HER31_RS00560 PF02772 S-adenosylmethionine synthetase, central domain HER31_RS00560 PF02773 S-adenosylmethionine synthetase, C-terminal domain HER31_RS00565 PF14743 DNA ligase OB-like domain HER31_RS00565 PF01068 ATP dependent DNA ligase domain HER31_RS00570 PF02779 Transketolase, pyrimidine binding domain HER31_RS00570 PF02780 Transketolase, C-terminal domain HER31_RS00570 PF00456 Transketolase, thiamine diphosphate binding domain HER31_RS00575 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS00575 PF00072 Response regulator receiver domain HER31_RS00585 PF03061 Thioesterase superfamily HER31_RS00595 PF00571 CBS domain HER31_RS00595 PF03471 Transporter associated domain HER31_RS00595 PF01595 Cyclin M transmembrane N-terminal domain HER31_RS00600 PF01578 Cytochrome C assembly protein HER31_RS00605 PF00448 SRP54-type protein, GTPase domain HER31_RS00605 PF02978 Signal peptide binding domain HER31_RS00605 PF02881 SRP54-type protein, helical bundle domain HER31_RS00610 PF00886 Ribosomal protein S16 HER31_RS00615 PF05239 PRC-barrel domain HER31_RS00615 PF01782 RimM N-terminal domain HER31_RS00620 PF01746 tRNA (Guanine-1)-methyltransferase HER31_RS00625 PF01245 Ribosomal protein L19 HER31_RS00630 PF00793 DAHP synthetase I family HER31_RS00635 PF02153 Prephenate dehydrogenase HER31_RS00635 PF01817 Chorismate mutase type II HER31_RS00655 PF06974 Protein of unknown function (DUF1298) HER31_RS00655 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain HER31_RS00660 PF07859 alpha/beta hydrolase fold HER31_RS00675 PF00106 short chain dehydrogenase HER31_RS00680 PF00800 Prephenate dehydratase HER31_RS00680 PF01817 Chorismate mutase type II HER31_RS00685 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HER31_RS00695 PF01322 Cytochrome C' HER31_RS00700 PF01371 Trp repressor protein HER31_RS00705 PF03222 Tryptophan/tyrosine permease family HER31_RS00710 PF04222 Protein of unknown function (DUF416) HER31_RS00715 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HER31_RS00715 PF00072 Response regulator receiver domain HER31_RS00715 PF01627 Hpt domain HER31_RS00715 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS00715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS00715 PF00672 HAMP domain HER31_RS00720 PF05958 tRNA (Uracil-5-)-methyltransferase HER31_RS00720 PF01938 TRAM domain HER31_RS00725 PF13291 ACT domain HER31_RS00725 PF04607 Region found in RelA / SpoT proteins HER31_RS00725 PF02824 TGS domain HER31_RS00730 PF03819 MazG nucleotide pyrophosphohydrolase domain HER31_RS00735 PF06418 CTP synthase N-terminus HER31_RS00735 PF00117 Glutamine amidotransferase class-I HER31_RS00740 PF00113 Enolase, C-terminal TIM barrel domain HER31_RS00740 PF03952 Enolase, N-terminal domain HER31_RS00745 PF04977 Septum formation initiator HER31_RS00750 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HER31_RS00755 PF02542 YgbB family HER31_RS00765 PF01975 Survival protein SurE HER31_RS00775 PF01551 Peptidase family M23 HER31_RS00775 PF01476 LysM domain HER31_RS00780 PF04542 Sigma-70 region 2 HER31_RS00780 PF04539 Sigma-70 region 3 HER31_RS00780 PF04545 Sigma-70, region 4 HER31_RS00780 PF00140 Sigma-70 factor, region 1.2 HER31_RS00785 PF05190 MutS family domain IV HER31_RS00785 PF01624 MutS domain I HER31_RS00785 PF05192 MutS domain III HER31_RS00785 PF00488 MutS domain V HER31_RS00785 PF05188 MutS domain II HER31_RS00790 PF00154 recA bacterial DNA recombination protein HER31_RS00795 PF02631 RecX family HER31_RS00810 PF01869 BadF/BadG/BcrA/BcrD ATPase family HER31_RS00815 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component HER31_RS00820 PF00266 Aminotransferase class-V HER31_RS00825 PF02272 DHHA1 domain HER31_RS00825 PF01411 tRNA synthetases class II (A) HER31_RS00825 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HER31_RS00830 PF00696 Amino acid kinase family HER31_RS00830 PF01842 ACT domain HER31_RS00830 PF13840 ACT domain HER31_RS00835 PF02599 Global regulator protein family HER31_RS00875 PF02082 Transcriptional regulator HER31_RS00885 PF05193 Peptidase M16 inactive domain HER31_RS00885 PF00675 Insulinase (Peptidase family M16) HER31_RS00890 PF04262 Glutamate-cysteine ligase HER31_RS00895 PF01810 LysE type translocator HER31_RS00905 PF02779 Transketolase, pyrimidine binding domain HER31_RS00905 PF02780 Transketolase, C-terminal domain HER31_RS00905 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HER31_RS00910 PF00348 Polyprenyl synthetase HER31_RS00915 PF02609 Exonuclease VII small subunit HER31_RS00920 PF01618 MotA/TolQ/ExbB proton channel family HER31_RS00925 PF00691 OmpA family HER31_RS00925 PF13677 Membrane MotB of proton-channel complex MotA/MotB HER31_RS00930 PF02926 THUMP domain HER31_RS00930 PF02568 Thiamine biosynthesis protein (ThiI) HER31_RS00940 PF00793 DAHP synthetase I family HER31_RS00945 PF02558 Ketopantoate reductase PanE/ApbA HER31_RS00945 PF08546 Ketopantoate reductase PanE/ApbA C terminal HER31_RS00965 PF05935 Arylsulfotransferase (ASST) HER31_RS00965 PF17425 Arylsulfotransferase Ig-like domain HER31_RS00970 PF07690 Major Facilitator Superfamily HER31_RS00975 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HER31_RS00985 PF05175 Methyltransferase small domain HER31_RS00995 PF01722 BolA-like protein HER31_RS01005 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HER31_RS01010 PF03480 Bacterial extracellular solute-binding protein, family 7 HER31_RS01015 PF02664 S-Ribosylhomocysteinase (LuxS) HER31_RS01020 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HER31_RS01020 PF11973 NQRA C-terminal domain HER31_RS01025 PF03116 NQR2, RnfD, RnfE family HER31_RS01030 PF04205 FMN-binding domain HER31_RS01035 PF02508 Rnf-Nqr subunit, membrane protein HER31_RS01040 PF02508 Rnf-Nqr subunit, membrane protein HER31_RS01045 PF00970 Oxidoreductase FAD-binding domain HER31_RS01045 PF00175 Oxidoreductase NAD-binding domain HER31_RS01045 PF00111 2Fe-2S iron-sulfur cluster binding domain HER31_RS01050 PF02424 ApbE family HER31_RS01055 PF00072 Response regulator receiver domain HER31_RS01060 PF00817 impB/mucB/samB family HER31_RS01060 PF11798 IMS family HHH motif HER31_RS01060 PF11799 impB/mucB/samB family C-terminal domain HER31_RS01075 PF13087 AAA domain HER31_RS01075 PF13086 AAA domain HER31_RS01075 PF13086 AAA domain HER31_RS01075 PF13087 AAA domain HER31_RS01075 PF13195 Protein of unknown function (DUF4011) HER31_RS01075 PF13195 Protein of unknown function (DUF4011) HER31_RS01080 PF00578 AhpC/TSA family HER31_RS01080 PF10417 C-terminal domain of 1-Cys peroxiredoxin HER31_RS01085 PF13192 Thioredoxin domain HER31_RS01085 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER31_RS01095 PF13533 Biotin-lipoyl like HER31_RS01100 PF00873 AcrB/AcrD/AcrF family HER31_RS01105 PF00072 Response regulator receiver domain HER31_RS01105 PF00486 Transcriptional regulatory protein, C terminal HER31_RS01110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS01110 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS01120 PF00962 Adenosine/AMP deaminase HER31_RS01130 PF13411 MerR HTH family regulatory protein HER31_RS01135 PF00797 N-acetyltransferase HER31_RS01150 PF01144 Coenzyme A transferase HER31_RS01155 PF01144 Coenzyme A transferase HER31_RS01170 PF00682 HMGL-like HER31_RS01175 PF18140 Propionyl-coenzyme A carboxylase BT domain HER31_RS01175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HER31_RS01175 PF02785 Biotin carboxylase C-terminal domain HER31_RS01175 PF00364 Biotin-requiring enzyme HER31_RS01175 PF00289 Biotin carboxylase, N-terminal domain HER31_RS01180 PF00378 Enoyl-CoA hydratase/isomerase HER31_RS01185 PF01039 Carboxyl transferase domain HER31_RS01190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HER31_RS01190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HER31_RS01190 PF02770 Acyl-CoA dehydrogenase, middle domain HER31_RS01195 PF13411 MerR HTH family regulatory protein HER31_RS01200 PF04229 GrpB protein HER31_RS01205 PF16177 Acetyl-coenzyme A synthetase N-terminus HER31_RS01205 PF13193 AMP-binding enzyme C-terminal domain HER31_RS01205 PF00501 AMP-binding enzyme HER31_RS01210 PF01040 UbiA prenyltransferase family HER31_RS01215 PF00106 short chain dehydrogenase HER31_RS01225 PF01235 Sodium:alanine symporter family HER31_RS01235 PF00248 Aldo/keto reductase family HER31_RS01240 PF03922 OmpW family HER31_RS01245 PF01842 ACT domain HER31_RS01245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HER31_RS01245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HER31_RS01250 PF00440 Bacterial regulatory proteins, tetR family HER31_RS01250 PF08359 YsiA-like protein, C-terminal region HER31_RS01255 PF00171 Aldehyde dehydrogenase family HER31_RS01260 PF00255 Glutathione peroxidase HER31_RS01265 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HER31_RS01270 PF00384 Molybdopterin oxidoreductase HER31_RS01270 PF01568 Molydopterin dinucleotide binding domain HER31_RS01270 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS01275 PF00011 Hsp20/alpha crystallin family HER31_RS01290 PF00271 Helicase conserved C-terminal domain HER31_RS01290 PF00270 DEAD/DEAH box helicase HER31_RS01295 PF02335 Cytochrome c552 HER31_RS01300 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS01300 PF17158 Membrane-associated sensor, integral membrane domain HER31_RS01315 PF04333 MlaA lipoprotein HER31_RS01320 PF00072 Response regulator receiver domain HER31_RS01330 PF03466 LysR substrate binding domain HER31_RS01330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS01335 PF07690 Major Facilitator Superfamily HER31_RS01350 PF14863 Alkyl sulfatase dimerisation HER31_RS01350 PF14864 Alkyl sulfatase C-terminal HER31_RS01350 PF00753 Metallo-beta-lactamase superfamily HER31_RS01355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS01355 PF03466 LysR substrate binding domain HER31_RS01365 PF06224 Winged helix DNA-binding domain HER31_RS01395 PF02492 CobW/HypB/UreG, nucleotide-binding domain HER31_RS01395 PF07683 Cobalamin synthesis protein cobW C-terminal domain HER31_RS01405 PF04542 Sigma-70 region 2 HER31_RS01405 PF04545 Sigma-70, region 4 HER31_RS01415 PF00106 short chain dehydrogenase HER31_RS01420 PF02027 RolB/RolC glucosidase family HER31_RS01420 PF01593 Flavin containing amine oxidoreductase HER31_RS01450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HER31_RS01450 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HER31_RS01455 PF07152 YaeQ protein HER31_RS01465 PF00072 Response regulator receiver domain HER31_RS01470 PF00360 Phytochrome region HER31_RS01470 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS01470 PF01590 GAF domain HER31_RS01470 PF00563 EAL domain HER31_RS01475 PF12343 Cold shock protein DEAD box A HER31_RS01475 PF00270 DEAD/DEAH box helicase HER31_RS01475 PF03880 DbpA RNA binding domain HER31_RS01475 PF00271 Helicase conserved C-terminal domain HER31_RS01490 PF04542 Sigma-70 region 2 HER31_RS01490 PF08281 Sigma-70, region 4 HER31_RS01525 PF13520 Amino acid permease HER31_RS01535 PF13375 RnfC Barrel sandwich hybrid domain HER31_RS01535 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HER31_RS01535 PF10531 SLBB domain HER31_RS01535 PF13237 4Fe-4S dicluster domain HER31_RS01540 PF00936 BMC domain HER31_RS01545 PF05985 Ethanolamine ammonia-lyase light chain (EutC) HER31_RS01550 PF06751 Ethanolamine ammonia lyase large subunit (EutB) HER31_RS01555 PF06277 Ethanolamine utilisation protein EutA HER31_RS01560 PF00465 Iron-containing alcohol dehydrogenase HER31_RS01570 PF00171 Aldehyde dehydrogenase family HER31_RS01575 PF03319 Ethanolamine utilisation protein EutN/carboxysome HER31_RS01580 PF00936 BMC domain HER31_RS01585 PF00936 BMC domain HER31_RS01590 PF01515 Phosphate acetyl/butaryl transferase HER31_RS01595 PF01923 Cobalamin adenosyltransferase HER31_RS01600 PF06249 Ethanolamine utilisation protein EutQ HER31_RS01610 PF00936 BMC domain HER31_RS01620 PF04362 Bacterial Fe(2+) trafficking HER31_RS01630 PF10576 Iron-sulfur binding domain of endonuclease III HER31_RS01630 PF14815 NUDIX domain HER31_RS01630 PF00730 HhH-GPD superfamily base excision DNA repair protein HER31_RS01630 PF00633 Helix-hairpin-helix motif HER31_RS01645 PF04960 Glutaminase HER31_RS01655 PF03466 LysR substrate binding domain HER31_RS01655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS01665 PF06969 HemN C-terminal domain HER31_RS01665 PF04055 Radical SAM superfamily HER31_RS01670 PF01725 Ham1 family HER31_RS01685 PF02594 Uncharacterised ACR, YggU family COG1872 HER31_RS01690 PF02325 YGGT family HER31_RS01695 PF03807 NADP oxidoreductase coenzyme F420-dependent HER31_RS01695 PF14748 Pyrroline-5-carboxylate reductase dimerisation HER31_RS01700 PF01168 Alanine racemase, N-terminal domain HER31_RS01705 PF00437 Type II/IV secretion system protein HER31_RS01710 PF00437 Type II/IV secretion system protein HER31_RS01725 PF00873 AcrB/AcrD/AcrF family HER31_RS01735 PF00529 HlyD membrane-fusion protein of T1SS HER31_RS01735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HER31_RS01740 PF12801 4Fe-4S binding domain HER31_RS01745 PF03264 NapC/NirT cytochrome c family, N-terminal region HER31_RS01750 PF00756 Putative esterase HER31_RS01755 PF08240 Alcohol dehydrogenase GroES-like domain HER31_RS01755 PF00107 Zinc-binding dehydrogenase HER31_RS01760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS01760 PF03466 LysR substrate binding domain HER31_RS01765 PF01507 Phosphoadenosine phosphosulfate reductase family HER31_RS01770 PF00009 Elongation factor Tu GTP binding domain HER31_RS01775 PF03600 Citrate transporter HER31_RS01775 PF02080 TrkA-C domain HER31_RS01790 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HER31_RS01790 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HER31_RS01790 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HER31_RS01790 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HER31_RS01795 PF00480 ROK family HER31_RS01850 PF00873 AcrB/AcrD/AcrF family HER31_RS01870 PF00872 Transposase, Mutator family HER31_RS01930 PF13419 Haloacid dehalogenase-like hydrolase HER31_RS01940 PF08360 QacR-like protein, C-terminal region HER31_RS01940 PF00440 Bacterial regulatory proteins, tetR family HER31_RS01965 PF12833 Helix-turn-helix domain HER31_RS02015 PF03472 Autoinducer binding domain HER31_RS02015 PF00196 Bacterial regulatory proteins, luxR family HER31_RS02025 PF09704 CRISPR-associated protein (Cas_Cas5) HER31_RS02045 PF01867 CRISPR associated protein Cas1 HER31_RS02050 PF09827 CRISPR associated protein Cas2 HER31_RS02070 PF01568 Molydopterin dinucleotide binding domain HER31_RS02070 PF00384 Molybdopterin oxidoreductase HER31_RS02070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS02075 PF13247 4Fe-4S dicluster domain HER31_RS02075 PF12800 4Fe-4S binding domain HER31_RS02080 PF02613 Nitrate reductase delta subunit HER31_RS02085 PF12838 4Fe-4S dicluster domain HER31_RS02100 PF00440 Bacterial regulatory proteins, tetR family HER31_RS02125 PF17425 Arylsulfotransferase Ig-like domain HER31_RS02125 PF05935 Arylsulfotransferase (ASST) HER31_RS02130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS02130 PF03466 LysR substrate binding domain HER31_RS02135 PF00106 short chain dehydrogenase HER31_RS02150 PF04228 Putative neutral zinc metallopeptidase HER31_RS02155 PF13419 Haloacid dehalogenase-like hydrolase HER31_RS02160 PF00043 Glutathione S-transferase, C-terminal domain HER31_RS02160 PF02798 Glutathione S-transferase, N-terminal domain HER31_RS02185 PF02798 Glutathione S-transferase, N-terminal domain HER31_RS02205 PF03466 LysR substrate binding domain HER31_RS02205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS02215 PF14864 Alkyl sulfatase C-terminal HER31_RS02215 PF14863 Alkyl sulfatase dimerisation HER31_RS02215 PF00753 Metallo-beta-lactamase superfamily HER31_RS02225 PF00027 Cyclic nucleotide-binding domain HER31_RS02225 PF00520 Ion transport protein HER31_RS02240 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HER31_RS02240 PF12241 Trans-2-enoyl-CoA reductase catalytic region HER31_RS02240 PF07055 Enoyl reductase FAD binding domain HER31_RS02245 PF00005 ABC transporter HER31_RS02250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HER31_RS02250 PF00005 ABC transporter HER31_RS02255 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS02255 PF12911 N-terminal TM domain of oligopeptide transport permease C HER31_RS02260 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS02265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HER31_RS02270 PF02954 Bacterial regulatory protein, Fis family HER31_RS02270 PF00158 Sigma-54 interaction domain HER31_RS02275 PF04012 PspA/IM30 family HER31_RS02285 PF04024 PspC domain HER31_RS02290 PF04317 YcjX-like family, DUF463 HER31_RS02295 PF05128 Domain of unknown function (DUF697) HER31_RS02300 PF01053 Cys/Met metabolism PLP-dependent enzyme HER31_RS02305 PF00351 Biopterin-dependent aromatic amino acid hydroxylase HER31_RS02310 PF01329 Pterin 4 alpha carbinolamine dehydratase HER31_RS02315 PF00158 Sigma-54 interaction domain HER31_RS02315 PF18024 Helix-turn-helix domain HER31_RS02320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HER31_RS02330 PF14497 Glutathione S-transferase, C-terminal domain HER31_RS02330 PF02798 Glutathione S-transferase, N-terminal domain HER31_RS02335 PF03466 LysR substrate binding domain HER31_RS02335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS02340 PF07690 Major Facilitator Superfamily HER31_RS02350 PF00749 tRNA synthetases class I (E and Q), catalytic domain HER31_RS02465 PF13472 GDSL-like Lipase/Acylhydrolase family HER31_RS02470 PF00005 ABC transporter HER31_RS02480 PF01370 NAD dependent epimerase/dehydratase family HER31_RS02480 PF08338 Domain of unknown function (DUF1731) HER31_RS02485 PF02152 Dihydroneopterin aldolase HER31_RS02490 PF01594 AI-2E family transporter HER31_RS02495 PF10672 S-adenosylmethionine-dependent methyltransferase HER31_RS02495 PF17785 PUA-like domain HER31_RS02515 PF07556 Protein of unknown function (DUF1538) HER31_RS02520 PF07556 Protein of unknown function (DUF1538) HER31_RS02530 PF01743 Poly A polymerase head domain HER31_RS02530 PF02272 DHHA1 domain HER31_RS02530 PF00571 CBS domain HER31_RS02530 PF01368 DHH family HER31_RS02535 PF07085 DRTGG domain HER31_RS02535 PF01515 Phosphate acetyl/butaryl transferase HER31_RS02540 PF00871 Acetokinase family HER31_RS02545 PF04217 Protein of unknown function, DUF412 HER31_RS02550 PF04055 Radical SAM superfamily HER31_RS02555 PF01228 Glycine radical HER31_RS02555 PF02901 Pyruvate formate lyase-like HER31_RS02570 PF00474 Sodium:solute symporter family HER31_RS02580 PF03372 Endonuclease/Exonuclease/phosphatase family HER31_RS02585 PF03795 YCII-related domain HER31_RS02590 PF07690 Major Facilitator Superfamily HER31_RS02595 PF04279 Intracellular septation protein A HER31_RS02600 PF00290 Tryptophan synthase alpha chain HER31_RS02605 PF00291 Pyridoxal-phosphate dependent enzyme HER31_RS02610 PF00218 Indole-3-glycerol phosphate synthase HER31_RS02610 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HER31_RS02615 PF02885 Glycosyl transferase family, helical bundle domain HER31_RS02615 PF00591 Glycosyl transferase family, a/b domain HER31_RS02620 PF00117 Glutamine amidotransferase class-I HER31_RS02625 PF00425 chorismate binding enzyme HER31_RS02625 PF04715 Anthranilate synthase component I, N terminal region HER31_RS02630 PF18152 DAHP synthase ferredoxin-like domain HER31_RS02630 PF00793 DAHP synthetase I family HER31_RS02635 PF02811 PHP domain HER31_RS02640 PF01300 Telomere recombination HER31_RS02645 PF02616 Segregation and condensation protein ScpA HER31_RS02650 PF04079 Segregation and condensation complex subunit ScpB HER31_RS02655 PF01479 S4 domain HER31_RS02655 PF00849 RNA pseudouridylate synthase HER31_RS02660 PF09905 DNA-binding protein VF530 HER31_RS02665 PF00106 short chain dehydrogenase HER31_RS02675 PF08496 Peptidase family S49 N-terminal HER31_RS02675 PF01343 Peptidase family S49 HER31_RS02680 PF00375 Sodium:dicarboxylate symporter family HER31_RS02685 PF04996 Succinylarginine dihydrolase HER31_RS02690 PF08272 Topoisomerase I zinc-ribbon-like HER31_RS02690 PF01131 DNA topoisomerase HER31_RS02690 PF01751 Toprim domain HER31_RS02690 PF01396 Topoisomerase DNA binding C4 zinc finger HER31_RS02700 PF03466 LysR substrate binding domain HER31_RS02700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS02705 PF03313 Serine dehydratase alpha chain HER31_RS02705 PF03315 Serine dehydratase beta chain HER31_RS02720 PF01207 Dihydrouridine synthase (Dus) HER31_RS02730 PF05114 Protein of unknown function (DUF692) HER31_RS02740 PF00156 Phosphoribosyl transferase domain HER31_RS02745 PF12169 DNA polymerase III subunits gamma and tau domain III HER31_RS02745 PF12170 DNA polymerase III tau subunit V interacting with alpha HER31_RS02750 PF02575 YbaB/EbfC DNA-binding family HER31_RS02755 PF02132 RecR protein HER31_RS02755 PF13662 Toprim domain HER31_RS02760 PF13361 UvrD-like helicase C-terminal domain HER31_RS02760 PF00580 UvrD/REP helicase N-terminal domain HER31_RS02760 PF12462 DNA helicase IV / RNA helicase N terminal HER31_RS02770 PF01668 SmpB protein HER31_RS02775 PF03364 Polyketide cyclase / dehydrase and lipid transport HER31_RS02780 PF03658 RnfH family Ubiquitin HER31_RS02785 PF04355 SmpA / OmlA family HER31_RS02790 PF00465 Iron-containing alcohol dehydrogenase HER31_RS02795 PF02463 RecF/RecN/SMC N terminal domain HER31_RS02800 PF00106 short chain dehydrogenase HER31_RS02805 PF01513 ATP-NAD kinase HER31_RS02810 PF01025 GrpE HER31_RS02820 PF00106 short chain dehydrogenase HER31_RS02825 PF03466 LysR substrate binding domain HER31_RS02825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS02835 PF00012 Hsp70 protein HER31_RS02840 PF01556 DnaJ C terminal domain HER31_RS02840 PF00226 DnaJ domain HER31_RS02840 PF00684 DnaJ central domain HER31_RS02850 PF07676 WD40-like Beta Propeller Repeat HER31_RS02850 PF00326 Prolyl oligopeptidase family HER31_RS02855 PF01435 Peptidase family M48 HER31_RS02860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HER31_RS02860 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HER31_RS02865 PF01113 Dihydrodipicolinate reductase, N-terminus HER31_RS02865 PF05173 Dihydrodipicolinate reductase, C-terminus HER31_RS02870 PF00117 Glutamine amidotransferase class-I HER31_RS02870 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HER31_RS02875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HER31_RS02875 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HER31_RS02875 PF02142 MGS-like domain HER31_RS02880 PF01272 Transcription elongation factor, GreA/GreB, C-term HER31_RS02880 PF03449 Transcription elongation factor, N-terminal HER31_RS02890 PF01985 CRS1 / YhbY (CRM) domain HER31_RS02895 PF01728 FtsJ-like methyltransferase HER31_RS02900 PF01434 Peptidase family M41 HER31_RS02900 PF17862 AAA+ lid domain HER31_RS02900 PF00004 ATPase family associated with various cellular activities (AAA) HER31_RS02900 PF06480 FtsH Extracellular HER31_RS02905 PF00809 Pterin binding enzyme HER31_RS02910 PF00121 Triosephosphate isomerase HER31_RS02915 PF03840 Preprotein translocase SecG subunit HER31_RS02930 PF02576 RimP N-terminal domain HER31_RS02930 PF17384 RimP C-terminal SH3 domain HER31_RS02935 PF00575 S1 RNA binding domain HER31_RS02935 PF08529 NusA N-terminal domain HER31_RS02935 PF13184 NusA-like KH domain HER31_RS02940 PF00009 Elongation factor Tu GTP binding domain HER31_RS02940 PF11987 Translation-initiation factor 2 HER31_RS02940 PF08364 Bacterial translation initiation factor IF-2 associated region HER31_RS02940 PF04760 Translation initiation factor IF-2, N-terminal region HER31_RS02945 PF02033 Ribosome-binding factor A HER31_RS02950 PF09157 Pseudouridine synthase II TruB, C-terminal HER31_RS02950 PF16198 tRNA pseudouridylate synthase B C-terminal domain HER31_RS02950 PF01509 TruB family pseudouridylate synthase (N terminal domain) HER31_RS02955 PF00312 Ribosomal protein S15 HER31_RS02960 PF00013 KH domain HER31_RS02960 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HER31_RS02960 PF00575 S1 RNA binding domain HER31_RS02960 PF03725 3' exoribonuclease family, domain 2 HER31_RS02960 PF01138 3' exoribonuclease family, domain 1 HER31_RS02970 PF07719 Tetratricopeptide repeat HER31_RS02970 PF13181 Tetratricopeptide repeat HER31_RS02975 PF00933 Glycosyl hydrolase family 3 N terminal domain HER31_RS02980 PF01979 Amidohydrolase family HER31_RS02985 PF03144 Elongation factor Tu domain 2 HER31_RS02985 PF00009 Elongation factor Tu GTP binding domain HER31_RS02985 PF16658 Class II release factor RF3, C-terminal domain HER31_RS02995 PF01026 TatD related DNase HER31_RS03000 PF01773 Na+ dependent nucleoside transporter N-terminus HER31_RS03000 PF07670 Nucleoside recognition HER31_RS03000 PF07662 Na+ dependent nucleoside transporter C-terminus HER31_RS03005 PF03502 Nucleoside-specific channel-forming protein, Tsx HER31_RS03010 PF01791 DeoC/LacD family aldolase HER31_RS03015 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HER31_RS03015 PF02885 Glycosyl transferase family, helical bundle domain HER31_RS03015 PF00591 Glycosyl transferase family, a/b domain HER31_RS03020 PF01676 Metalloenzyme superfamily HER31_RS03025 PF01048 Phosphorylase superfamily HER31_RS03035 PF18429 Domain of unknown function (DUF5609) HER31_RS03045 PF18073 Rubredoxin metal binding domain HER31_RS03055 PF00072 Response regulator receiver domain HER31_RS03055 PF00196 Bacterial regulatory proteins, luxR family HER31_RS03060 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS03060 PF00072 Response regulator receiver domain HER31_RS03060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS03060 PF01627 Hpt domain HER31_RS03060 PF00672 HAMP domain HER31_RS03060 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HER31_RS03070 PF00005 ABC transporter HER31_RS03070 PF12399 Branched-chain amino acid ATP-binding cassette transporter HER31_RS03075 PF13193 AMP-binding enzyme C-terminal domain HER31_RS03075 PF00501 AMP-binding enzyme HER31_RS03095 PF00005 ABC transporter HER31_RS03110 PF00795 Carbon-nitrogen hydrolase HER31_RS03115 PF00571 CBS domain HER31_RS03115 PF03471 Transporter associated domain HER31_RS03120 PF02130 Uncharacterized protein family UPF0054 HER31_RS03125 PF02562 PhoH-like protein HER31_RS03130 PF04055 Radical SAM superfamily HER31_RS03130 PF01938 TRAM domain HER31_RS03130 PF00919 Uncharacterized protein family UPF0004 HER31_RS03135 PF01494 FAD binding domain HER31_RS03150 PF05724 Thiopurine S-methyltransferase (TPMT) HER31_RS03155 PF00989 PAS fold HER31_RS03155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS03155 PF16736 Single Cache-like HER31_RS03155 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS03160 PF00486 Transcriptional regulatory protein, C terminal HER31_RS03160 PF00072 Response regulator receiver domain HER31_RS03170 PF00535 Glycosyl transferase family 2 HER31_RS03175 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase HER31_RS03190 PF00005 ABC transporter HER31_RS03200 PF00072 Response regulator receiver domain HER31_RS03215 PF00708 Acylphosphatase HER31_RS03225 PF00271 Helicase conserved C-terminal domain HER31_RS03225 PF00270 DEAD/DEAH box helicase HER31_RS03225 PF17757 UvrB interaction domain HER31_RS03225 PF02559 CarD-like/TRCF domain HER31_RS03225 PF03461 TRCF domain HER31_RS03235 PF12704 MacB-like periplasmic core domain HER31_RS03235 PF02687 FtsX-like permease family HER31_RS03240 PF00005 ABC transporter HER31_RS03245 PF12704 MacB-like periplasmic core domain HER31_RS03245 PF02687 FtsX-like permease family HER31_RS03265 PF13567 Domain of unknown function (DUF4131) HER31_RS03265 PF00753 Metallo-beta-lactamase superfamily HER31_RS03265 PF03772 Competence protein HER31_RS03270 PF00005 ABC transporter HER31_RS03270 PF00664 ABC transporter transmembrane region HER31_RS03275 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HER31_RS03280 PF03966 Trm112p-like protein HER31_RS03285 PF02348 Cytidylyltransferase HER31_RS03295 PF00753 Metallo-beta-lactamase superfamily HER31_RS03295 PF16123 Hydroxyacylglutathione hydrolase C-terminus HER31_RS03300 PF00873 AcrB/AcrD/AcrF family HER31_RS03305 PF00873 AcrB/AcrD/AcrF family HER31_RS03310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HER31_RS03315 PF00285 Citrate synthase, C-terminal domain HER31_RS03320 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HER31_RS03325 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HER31_RS03330 PF02910 Fumarate reductase flavoprotein C-term HER31_RS03330 PF00890 FAD binding domain HER31_RS03335 PF13085 2Fe-2S iron-sulfur cluster binding domain HER31_RS03340 PF16078 2-oxoglutarate dehydrogenase N-terminus HER31_RS03340 PF00676 Dehydrogenase E1 component HER31_RS03340 PF02779 Transketolase, pyrimidine binding domain HER31_RS03340 PF16870 2-oxoglutarate dehydrogenase C-terminal HER31_RS03345 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HER31_RS03345 PF02817 e3 binding domain HER31_RS03345 PF00364 Biotin-requiring enzyme HER31_RS03350 PF08442 ATP-grasp domain HER31_RS03350 PF00549 CoA-ligase HER31_RS03355 PF00549 CoA-ligase HER31_RS03355 PF02629 CoA binding domain HER31_RS03360 PF14226 non-haem dioxygenase in morphine synthesis N-terminal HER31_RS03360 PF03171 2OG-Fe(II) oxygenase superfamily HER31_RS03365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HER31_RS03365 PF00672 HAMP domain HER31_RS03380 PF01268 Formate--tetrahydrofolate ligase HER31_RS03400 PF02810 SEC-C motif HER31_RS03400 PF07517 SecA DEAD-like domain HER31_RS03400 PF07516 SecA Wing and Scaffold domain HER31_RS03400 PF01043 SecA preprotein cross-linking domain HER31_RS03405 PF00753 Metallo-beta-lactamase superfamily HER31_RS03415 PF02595 Glycerate kinase family HER31_RS03420 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB HER31_RS03425 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HER31_RS03445 PF02421 Ferrous iron transport protein B HER31_RS03445 PF07670 Nucleoside recognition HER31_RS03445 PF07664 Ferrous iron transport protein B C terminus HER31_RS03450 PF03264 NapC/NirT cytochrome c family, N-terminal region HER31_RS03455 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HER31_RS03455 PF00749 tRNA synthetases class I (E and Q), catalytic domain HER31_RS03460 PF00743 Flavin-binding monooxygenase-like HER31_RS03465 PF01475 Ferric uptake regulator family HER31_RS03470 PF02146 Sir2 family HER31_RS03475 PF00202 Aminotransferase class-III HER31_RS03475 PF06968 Biotin and Thiamin Synthesis associated domain HER31_RS03475 PF04055 Radical SAM superfamily HER31_RS03480 PF06968 Biotin and Thiamin Synthesis associated domain HER31_RS03480 PF04055 Radical SAM superfamily HER31_RS03485 PF00155 Aminotransferase class I and II HER31_RS03490 PF13649 Methyltransferase domain HER31_RS03500 PF03575 Peptidase family S51 HER31_RS03505 PF01435 Peptidase family M48 HER31_RS03510 PF14537 Cytochrome c3 HER31_RS03515 PF14537 Cytochrome c3 HER31_RS03520 PF04055 Radical SAM superfamily HER31_RS03525 PF01242 6-pyruvoyl tetrahydropterin synthase HER31_RS03535 PF01641 SelR domain HER31_RS03535 PF01625 Peptide methionine sulfoxide reductase HER31_RS03540 PF01451 Low molecular weight phosphotyrosine protein phosphatase HER31_RS03545 PF07690 Major Facilitator Superfamily HER31_RS03550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS03550 PF03466 LysR substrate binding domain HER31_RS03555 PF12111 Polyribonucleotide phosphorylase C terminal HER31_RS03555 PF10150 Ribonuclease E/G family HER31_RS03555 PF00575 S1 RNA binding domain HER31_RS03560 PF00849 RNA pseudouridylate synthase HER31_RS03560 PF01479 S4 domain HER31_RS03565 PF13419 Haloacid dehalogenase-like hydrolase HER31_RS03575 PF02545 Maf-like protein HER31_RS03580 PF02620 Large ribosomal RNA subunit accumulation protein YceD HER31_RS03585 PF01783 Ribosomal L32p protein family HER31_RS03590 PF02504 Fatty acid synthesis protein HER31_RS03595 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HER31_RS03595 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HER31_RS03600 PF00698 Acyl transferase domain HER31_RS03610 PF00550 Phosphopantetheine attachment site HER31_RS03615 PF00109 Beta-ketoacyl synthase, N-terminal domain HER31_RS03615 PF02801 Beta-ketoacyl synthase, C-terminal domain HER31_RS03620 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HER31_RS03620 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HER31_RS03625 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HER31_RS03625 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HER31_RS03630 PF08411 Exonuclease C-terminal HER31_RS03630 PF00929 Exonuclease HER31_RS03640 PF11992 Domain of unknown function (DUF3488) HER31_RS03640 PF13559 Domain of unknown function (DUF4129) HER31_RS03640 PF01841 Transglutaminase-like superfamily HER31_RS03650 PF17863 AAA lid domain HER31_RS03650 PF07726 ATPase family associated with various cellular activities (AAA) HER31_RS03655 PF01464 Transglycosylase SLT domain HER31_RS03655 PF14718 Soluble lytic murein transglycosylase L domain HER31_RS03660 PF00174 Oxidoreductase molybdopterin binding domain HER31_RS03665 PF01794 Ferric reductase like transmembrane component HER31_RS03675 PF10928 Protein of unknown function (DUF2810) HER31_RS03680 PF04542 Sigma-70 region 2 HER31_RS03680 PF04539 Sigma-70 region 3 HER31_RS03680 PF04545 Sigma-70, region 4 HER31_RS03680 PF00140 Sigma-70 factor, region 1.2 HER31_RS03695 PF02001 Protein of unknown function DUF134 HER31_RS03705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HER31_RS03705 PF18158 Adaptive response protein AidB N-terminal domain HER31_RS03705 PF02770 Acyl-CoA dehydrogenase, middle domain HER31_RS03710 PF04400 (Na+)-NQR maturation NqrM HER31_RS03715 PF00970 Oxidoreductase FAD-binding domain HER31_RS03715 PF00111 2Fe-2S iron-sulfur cluster binding domain HER31_RS03715 PF00175 Oxidoreductase NAD-binding domain HER31_RS03720 PF02508 Rnf-Nqr subunit, membrane protein HER31_RS03725 PF02508 Rnf-Nqr subunit, membrane protein HER31_RS03730 PF04205 FMN-binding domain HER31_RS03735 PF03116 NQR2, RnfD, RnfE family HER31_RS03745 PF00106 short chain dehydrogenase HER31_RS03765 PF00216 Bacterial DNA-binding protein HER31_RS03780 PF00128 Alpha amylase, catalytic domain HER31_RS03785 PF01386 Ribosomal L25p family HER31_RS03795 PF04357 TamB, inner membrane protein subunit of TAM complex HER31_RS03800 PF17243 POTRA domain TamA domain 1 HER31_RS03800 PF07244 Surface antigen variable number repeat HER31_RS03800 PF01103 Surface antigen HER31_RS03805 PF01112 Asparaginase HER31_RS03815 PF00132 Bacterial transferase hexapeptide (six repeats) HER31_RS03815 PF06426 Serine acetyltransferase, N-terminal HER31_RS03845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS03845 PF03466 LysR substrate binding domain HER31_RS03855 PF08274 PhnA Zinc-Ribbon HER31_RS03855 PF03831 PhnA domain HER31_RS03860 PF00005 ABC transporter HER31_RS03860 PF12848 ABC transporter HER31_RS03865 PF01546 Peptidase family M20/M25/M40 HER31_RS03865 PF07687 Peptidase dimerisation domain HER31_RS03880 PF03435 Saccharopine dehydrogenase NADP binding domain HER31_RS03885 PF08546 Ketopantoate reductase PanE/ApbA C terminal HER31_RS03885 PF02558 Ketopantoate reductase PanE/ApbA HER31_RS03930 PF13091 PLD-like domain HER31_RS03930 PF13396 Phospholipase_D-nuclease N-terminal HER31_RS03935 PF03372 Endonuclease/Exonuclease/phosphatase family HER31_RS03940 PF05649 Peptidase family M13 HER31_RS03940 PF01431 Peptidase family M13 HER31_RS03950 PF00892 EamA-like transporter family HER31_RS03960 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HER31_RS03960 PF01243 Pyridoxamine 5'-phosphate oxidase HER31_RS03965 PF05230 MASE2 domain HER31_RS03965 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS03970 PF00484 Carbonic anhydrase HER31_RS03985 PF01230 HIT domain HER31_RS04010 PF00593 TonB dependent receptor HER31_RS04010 PF07715 TonB-dependent Receptor Plug Domain HER31_RS04020 PF04973 Nicotinamide mononucleotide transporter HER31_RS04045 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HER31_RS04045 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HER31_RS04050 PF00881 Nitroreductase family HER31_RS04070 PF03601 Conserved hypothetical protein 698 HER31_RS04080 PF12849 PBP superfamily domain HER31_RS04085 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS04090 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS04095 PF00005 ABC transporter HER31_RS04105 PF01914 MarC family integral membrane protein HER31_RS04130 PF13286 Phosphohydrolase-associated domain HER31_RS04130 PF01966 HD domain HER31_RS04140 PF00155 Aminotransferase class I and II HER31_RS04150 PF00258 Flavodoxin HER31_RS04155 PF01402 Ribbon-helix-helix protein, copG family HER31_RS04165 PF12697 Alpha/beta hydrolase family HER31_RS04170 PF03925 SeqA protein C-terminal domain HER31_RS04170 PF17206 SeqA protein N-terminal domain HER31_RS04175 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HER31_RS04175 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HER31_RS04175 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HER31_RS04175 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HER31_RS04180 PF01926 50S ribosome-binding GTPase HER31_RS04185 PF01625 Peptide methionine sulfoxide reductase HER31_RS04190 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HER31_RS04195 PF00676 Dehydrogenase E1 component HER31_RS04195 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal HER31_RS04200 PF02780 Transketolase, C-terminal domain HER31_RS04200 PF02779 Transketolase, pyrimidine binding domain HER31_RS04205 PF00364 Biotin-requiring enzyme HER31_RS04205 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HER31_RS04205 PF02817 e3 binding domain HER31_RS04210 PF02445 Quinolinate synthetase A protein HER31_RS04225 PF00012 Hsp70 protein HER31_RS04235 PF01804 Penicillin amidase HER31_RS04240 PF06496 Protein of unknown function (DUF1097) HER31_RS04250 PF11893 Domain of unknown function (DUF3413) HER31_RS04250 PF00884 Sulfatase HER31_RS04255 PF07208 Protein of unknown function (DUF1414) HER31_RS04260 PF04245 37-kD nucleoid-associated bacterial protein HER31_RS04270 PF01906 Putative heavy-metal-binding HER31_RS04275 PF01906 Putative heavy-metal-binding HER31_RS04280 PF01435 Peptidase family M48 HER31_RS04295 PF09317 Domain of unknown function (DUF1974) HER31_RS04295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HER31_RS04295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HER31_RS04295 PF02770 Acyl-CoA dehydrogenase, middle domain HER31_RS04300 PF13230 Glutamine amidotransferases class-II HER31_RS04315 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HER31_RS04320 PF03846 Cell division inhibitor SulA HER31_RS04330 PF01336 OB-fold nucleic acid binding domain HER31_RS04330 PF02811 PHP domain HER31_RS04330 PF14579 Helix-hairpin-helix motif HER31_RS04330 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HER31_RS04330 PF07733 Bacterial DNA polymerase III alpha NTPase domain HER31_RS04340 PF13188 PAS domain HER31_RS04340 PF03707 Bacterial signalling protein N terminal repeat HER31_RS04340 PF00563 EAL domain HER31_RS04340 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS04350 PF01047 MarR family HER31_RS04360 PF03738 Glutathionylspermidine synthase preATP-grasp HER31_RS04365 PF06693 Protein of unknown function (DUF1190) HER31_RS04390 PF00005 ABC transporter HER31_RS04405 PF06719 AraC-type transcriptional regulator N-terminus HER31_RS04405 PF12833 Helix-turn-helix domain HER31_RS04425 PF10576 Iron-sulfur binding domain of endonuclease III HER31_RS04425 PF00730 HhH-GPD superfamily base excision DNA repair protein HER31_RS04425 PF00633 Helix-hairpin-helix motif HER31_RS04430 PF02508 Rnf-Nqr subunit, membrane protein HER31_RS04435 PF04205 FMN-binding domain HER31_RS04440 PF03116 NQR2, RnfD, RnfE family HER31_RS04445 PF13375 RnfC Barrel sandwich hybrid domain HER31_RS04445 PF12838 4Fe-4S dicluster domain HER31_RS04445 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HER31_RS04450 PF04060 Putative Fe-S cluster HER31_RS04455 PF02508 Rnf-Nqr subunit, membrane protein HER31_RS04460 PF12792 CSS motif domain associated with EAL HER31_RS04460 PF00563 EAL domain HER31_RS04470 PF07715 TonB-dependent Receptor Plug Domain HER31_RS04470 PF00593 TonB dependent receptor HER31_RS04475 PF00005 ABC transporter HER31_RS04480 PF01032 FecCD transport family HER31_RS04490 PF02472 Biopolymer transport protein ExbD/TolR HER31_RS04495 PF01618 MotA/TolQ/ExbB proton channel family HER31_RS04505 PF04055 Radical SAM superfamily HER31_RS04510 PF06228 Haem utilisation ChuX/HutX HER31_RS04515 PF01243 Pyridoxamine 5'-phosphate oxidase HER31_RS04520 PF00664 ABC transporter transmembrane region HER31_RS04520 PF00005 ABC transporter HER31_RS04560 PF03466 LysR substrate binding domain HER31_RS04560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS04565 PF05935 Arylsulfotransferase (ASST) HER31_RS04565 PF17425 Arylsulfotransferase Ig-like domain HER31_RS04580 PF00037 4Fe-4S binding domain HER31_RS04580 PF12798 4Fe-4S binding domain HER31_RS04585 PF00361 Proton-conducting membrane transporter HER31_RS04590 PF00146 NADH dehydrogenase HER31_RS04595 PF00361 Proton-conducting membrane transporter HER31_RS04595 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HER31_RS04600 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HER31_RS04605 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HER31_RS04605 PF00361 Proton-conducting membrane transporter HER31_RS04610 PF00374 Nickel-dependent hydrogenase HER31_RS04610 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HER31_RS04610 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HER31_RS04615 PF12838 4Fe-4S dicluster domain HER31_RS04620 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HER31_RS04625 PF07450 Formate hydrogenlyase maturation protein HycH HER31_RS04630 PF01750 Hydrogenase maturation protease HER31_RS04635 PF12800 4Fe-4S binding domain HER31_RS04635 PF13247 4Fe-4S dicluster domain HER31_RS04645 PF00158 Sigma-54 interaction domain HER31_RS04645 PF01590 GAF domain HER31_RS04650 PF02634 FdhD/NarQ family HER31_RS04655 PF01226 Formate/nitrite transporter HER31_RS04665 PF03841 L-seryl-tRNA selenium transferase HER31_RS04665 PF12390 Selenocysteine synthase N terminal HER31_RS04670 PF09105 Elongation factor SelB, winged helix HER31_RS04670 PF03144 Elongation factor Tu domain 2 HER31_RS04670 PF00009 Elongation factor Tu GTP binding domain HER31_RS04670 PF09107 Elongation factor SelB, winged helix HER31_RS04670 PF09106 Elongation factor SelB, winged helix HER31_RS04675 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HER31_RS04700 PF00580 UvrD/REP helicase N-terminal domain HER31_RS04700 PF13361 UvrD-like helicase C-terminal domain HER31_RS04705 PF02463 RecF/RecN/SMC N terminal domain HER31_RS04725 PF03625 Domain of unknown function DUF302 HER31_RS04725 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HER31_RS04765 PF00593 TonB dependent receptor HER31_RS04765 PF07715 TonB-dependent Receptor Plug Domain HER31_RS04770 PF00005 ABC transporter HER31_RS04775 PF01032 FecCD transport family HER31_RS04780 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HER31_RS04785 PF01497 Periplasmic binding protein HER31_RS04790 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HER31_RS04795 PF00300 Histidine phosphatase superfamily (branch 1) HER31_RS04805 PF07685 CobB/CobQ-like glutamine amidotransferase domain HER31_RS04805 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HER31_RS04810 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HER31_RS04810 PF07685 CobB/CobQ-like glutamine amidotransferase domain HER31_RS04815 PF02654 Cobalamin-5-phosphate synthase HER31_RS04820 PF12557 Cob(I)alamin adenosyltransferase N terminal HER31_RS04820 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HER31_RS04825 PF01497 Periplasmic binding protein HER31_RS04840 PF04474 Protein of unknown function (DUF554) HER31_RS04870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS04870 PF03466 LysR substrate binding domain HER31_RS04875 PF00158 Sigma-54 interaction domain HER31_RS04875 PF00072 Response regulator receiver domain HER31_RS04875 PF02954 Bacterial regulatory protein, Fis family HER31_RS04880 PF14537 Cytochrome c3 HER31_RS04880 PF00890 FAD binding domain HER31_RS04895 PF13486 Reductive dehalogenase subunit HER31_RS04895 PF12838 4Fe-4S dicluster domain HER31_RS04915 PF00005 ABC transporter HER31_RS04925 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HER31_RS04930 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB HER31_RS04935 PF12800 4Fe-4S binding domain HER31_RS04935 PF13247 4Fe-4S dicluster domain HER31_RS04940 PF01568 Molydopterin dinucleotide binding domain HER31_RS04940 PF00384 Molybdopterin oxidoreductase HER31_RS04940 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS04945 PF02613 Nitrate reductase delta subunit HER31_RS04950 PF12800 4Fe-4S binding domain HER31_RS04950 PF13247 4Fe-4S dicluster domain HER31_RS04955 PF00384 Molybdopterin oxidoreductase HER31_RS04955 PF01568 Molydopterin dinucleotide binding domain HER31_RS04955 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS04960 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB HER31_RS04965 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HER31_RS04975 PF13247 4Fe-4S dicluster domain HER31_RS04975 PF12800 4Fe-4S binding domain HER31_RS04980 PF01568 Molydopterin dinucleotide binding domain HER31_RS04980 PF00384 Molybdopterin oxidoreductase HER31_RS04980 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS04985 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB HER31_RS04990 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HER31_RS05000 PF03186 CobD/Cbib protein HER31_RS05005 PF00155 Aminotransferase class I and II HER31_RS05010 PF00300 Histidine phosphatase superfamily (branch 1) HER31_RS05015 PF01888 CbiD HER31_RS05020 PF02570 Precorrin-8X methylmutase HER31_RS05025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HER31_RS05030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HER31_RS05035 PF11761 Cobalamin biosynthesis central region HER31_RS05035 PF01890 Cobalamin synthesis G C-terminus HER31_RS05035 PF11760 Cobalamin synthesis G N-terminal HER31_RS05045 PF06180 Cobalt chelatase (CbiK) HER31_RS05050 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HER31_RS05050 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HER31_RS05055 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HER31_RS05060 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HER31_RS05060 PF10414 Sirohaem synthase dimerisation region HER31_RS05060 PF14824 Sirohaem biosynthesis protein central HER31_RS05065 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS05075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HER31_RS05080 PF00005 ABC transporter HER31_RS05080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HER31_RS05085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HER31_RS05085 PF00005 ABC transporter HER31_RS05090 PF01554 MatE HER31_RS05170 PF17757 UvrB interaction domain HER31_RS05170 PF12344 Ultra-violet resistance protein B HER31_RS05170 PF02151 UvrB/uvrC motif HER31_RS05170 PF00271 Helicase conserved C-terminal domain HER31_RS05170 PF04851 Type III restriction enzyme, res subunit HER31_RS05185 PF06508 Queuosine biosynthesis protein QueC HER31_RS05190 PF00291 Pyridoxal-phosphate dependent enzyme HER31_RS05195 PF12843 Putative quorum-sensing-regulated virulence factor HER31_RS05235 PF00563 EAL domain HER31_RS05235 PF03707 Bacterial signalling protein N terminal repeat HER31_RS05235 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS05240 PF02810 SEC-C motif HER31_RS05255 PF00196 Bacterial regulatory proteins, luxR family HER31_RS05255 PF00072 Response regulator receiver domain HER31_RS05260 PF01541 GIY-YIG catalytic domain HER31_RS05260 PF02151 UvrB/uvrC motif HER31_RS05260 PF08459 UvrC Helix-hairpin-helix N-terminal HER31_RS05265 PF01066 CDP-alcohol phosphatidyltransferase HER31_RS05320 PF09297 NADH pyrophosphatase zinc ribbon domain HER31_RS05320 PF00293 NUDIX domain HER31_RS05325 PF01541 GIY-YIG catalytic domain HER31_RS05330 PF02335 Cytochrome c552 HER31_RS05335 PF00873 AcrB/AcrD/AcrF family HER31_RS05340 PF13533 Biotin-lipoyl like HER31_RS05345 PF13533 Biotin-lipoyl like HER31_RS05350 PF00440 Bacterial regulatory proteins, tetR family HER31_RS05355 PF18693 TRAM domain HER31_RS05355 PF00919 Uncharacterized protein family UPF0004 HER31_RS05355 PF04055 Radical SAM superfamily HER31_RS05365 PF00440 Bacterial regulatory proteins, tetR family HER31_RS05370 PF00326 Prolyl oligopeptidase family HER31_RS05370 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HER31_RS05375 PF03061 Thioesterase superfamily HER31_RS05380 PF01618 MotA/TolQ/ExbB proton channel family HER31_RS05385 PF02472 Biopolymer transport protein ExbD/TolR HER31_RS05395 PF04052 TolB amino-terminal domain HER31_RS05395 PF07676 WD40-like Beta Propeller Repeat HER31_RS05400 PF00691 OmpA family HER31_RS05405 PF16331 TolA binding protein trimerisation HER31_RS05405 PF13174 Tetratricopeptide repeat HER31_RS05475 PF00535 Glycosyl transferase family 2 HER31_RS05480 PF00158 Sigma-54 interaction domain HER31_RS05480 PF02954 Bacterial regulatory protein, Fis family HER31_RS05480 PF00072 Response regulator receiver domain HER31_RS05485 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS05485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS05525 PF00535 Glycosyl transferase family 2 HER31_RS05545 PF00462 Glutaredoxin HER31_RS05550 PF04851 Type III restriction enzyme, res subunit HER31_RS05550 PF00271 Helicase conserved C-terminal domain HER31_RS05555 PF13726 Na+-H+ antiporter family HER31_RS05555 PF03553 Na+/H+ antiporter family HER31_RS05560 PF10417 C-terminal domain of 1-Cys peroxiredoxin HER31_RS05560 PF00578 AhpC/TSA family HER31_RS05565 PF00929 Exonuclease HER31_RS05570 PF00691 OmpA family HER31_RS05570 PF18393 MotY N-terminal domain HER31_RS05575 PF01979 Amidohydrolase family HER31_RS05580 PF01476 LysM domain HER31_RS05580 PF01551 Peptidase family M23 HER31_RS05585 PF00155 Aminotransferase class I and II HER31_RS05595 PF12850 Calcineurin-like phosphoesterase superfamily domain HER31_RS05605 PF00313 'Cold-shock' DNA-binding domain HER31_RS05610 PF00313 'Cold-shock' DNA-binding domain HER31_RS05615 PF17785 PUA-like domain HER31_RS05615 PF10672 S-adenosylmethionine-dependent methyltransferase HER31_RS05620 PF13847 Methyltransferase domain HER31_RS05645 PF08525 Opacity-associated protein A N-terminal motif HER31_RS05645 PF01476 LysM domain HER31_RS05645 PF01551 Peptidase family M23 HER31_RS05655 PF13193 AMP-binding enzyme C-terminal domain HER31_RS05655 PF16177 Acetyl-coenzyme A synthetase N-terminus HER31_RS05655 PF00501 AMP-binding enzyme HER31_RS05660 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS05660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS05660 PF00672 HAMP domain HER31_RS05660 PF01627 Hpt domain HER31_RS05660 PF00072 Response regulator receiver domain HER31_RS05695 PF01047 MarR family HER31_RS05710 PF00753 Metallo-beta-lactamase superfamily HER31_RS05710 PF10996 Beta-Casp domain HER31_RS05710 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HER31_RS05725 PF00072 Response regulator receiver domain HER31_RS05725 PF00196 Bacterial regulatory proteins, luxR family HER31_RS05730 PF00793 DAHP synthetase I family HER31_RS05735 PF03618 Kinase/pyrophosphorylase HER31_RS05740 PF02896 PEP-utilising enzyme, TIM barrel domain HER31_RS05740 PF00391 PEP-utilising enzyme, mobile domain HER31_RS05740 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HER31_RS05745 PF02913 FAD linked oxidases, C-terminal domain HER31_RS05745 PF01565 FAD binding domain HER31_RS05745 PF13183 4Fe-4S dicluster domain HER31_RS05755 PF03466 LysR substrate binding domain HER31_RS05755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS05770 PF00390 Malic enzyme, N-terminal domain HER31_RS05770 PF03949 Malic enzyme, NAD binding domain HER31_RS05785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HER31_RS05785 PF00529 HlyD membrane-fusion protein of T1SS HER31_RS05790 PF00873 AcrB/AcrD/AcrF family HER31_RS05795 PF02321 Outer membrane efflux protein HER31_RS05810 PF00873 AcrB/AcrD/AcrF family HER31_RS05815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HER31_RS05825 PF00999 Sodium/hydrogen exchanger family HER31_RS05825 PF02254 TrkA-N domain HER31_RS05830 PF02525 Flavodoxin-like fold HER31_RS05840 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HER31_RS05840 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HER31_RS05840 PF10518 TAT (twin-arginine translocation) pathway signal sequence HER31_RS05845 PF00374 Nickel-dependent hydrogenase HER31_RS05850 PF01292 Prokaryotic cytochrome b561 HER31_RS05855 PF01750 Hydrogenase maturation protease HER31_RS05865 PF01455 HupF/HypC family HER31_RS05870 PF01300 Telomere recombination HER31_RS05870 PF07503 HypF finger HER31_RS05870 PF17788 HypF Kae1-like domain HER31_RS05870 PF00708 Acylphosphatase HER31_RS05880 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HER31_RS05885 PF02492 CobW/HypB/UreG, nucleotide-binding domain HER31_RS05900 PF01235 Sodium:alanine symporter family HER31_RS05910 PF03466 LysR substrate binding domain HER31_RS05910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS05915 PF02525 Flavodoxin-like fold HER31_RS05920 PF18030 RimK PreATP-grasp domain HER31_RS05920 PF08443 RimK-like ATP-grasp domain HER31_RS05930 PF08443 RimK-like ATP-grasp domain HER31_RS05930 PF18030 RimK PreATP-grasp domain HER31_RS05935 PF08003 Protein of unknown function (DUF1698) HER31_RS05940 PF13649 Methyltransferase domain HER31_RS05950 PF00152 tRNA synthetases class II (D, K and N) HER31_RS05950 PF02938 GAD domain HER31_RS05950 PF01336 OB-fold nucleic acid binding domain HER31_RS05955 PF02075 Crossover junction endodeoxyribonuclease RuvC HER31_RS05960 PF07499 RuvA, C-terminal domain HER31_RS05960 PF01330 RuvA N terminal domain HER31_RS05965 PF17864 RuvB AAA lid domain HER31_RS05965 PF05491 RuvB C-terminal winged helix domain HER31_RS05965 PF05496 Holliday junction DNA helicase RuvB P-loop domain HER31_RS05975 PF00732 GMC oxidoreductase HER31_RS05975 PF05199 GMC oxidoreductase HER31_RS05990 PF02190 ATP-dependent protease La (LON) substrate-binding domain HER31_RS05990 PF05362 Lon protease (S16) C-terminal proteolytic domain HER31_RS05990 PF00004 ATPase family associated with various cellular activities (AAA) HER31_RS06000 PF01568 Molydopterin dinucleotide binding domain HER31_RS06000 PF00384 Molybdopterin oxidoreductase HER31_RS06000 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HER31_RS06000 PF12838 4Fe-4S dicluster domain HER31_RS06000 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS06005 PF01476 LysM domain HER31_RS06005 PF17969 L,D-transpeptidase C-terminal domain HER31_RS06005 PF03734 L,D-transpeptidase catalytic domain HER31_RS06015 PF03006 Haemolysin-III related HER31_RS06025 PF00149 Calcineurin-like phosphoesterase HER31_RS06030 PF00245 Alkaline phosphatase HER31_RS06035 PF03477 ATP cone domain HER31_RS06035 PF13597 Anaerobic ribonucleoside-triphosphate reductase HER31_RS06085 PF13533 Biotin-lipoyl like HER31_RS06090 PF07690 Major Facilitator Superfamily HER31_RS06095 PF02321 Outer membrane efflux protein HER31_RS06115 PF00072 Response regulator receiver domain HER31_RS06115 PF00486 Transcriptional regulatory protein, C terminal HER31_RS06120 PF00672 HAMP domain HER31_RS06120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS06120 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS06130 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HER31_RS06135 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS06135 PF10518 TAT (twin-arginine translocation) pathway signal sequence HER31_RS06135 PF01568 Molydopterin dinucleotide binding domain HER31_RS06135 PF00384 Molybdopterin oxidoreductase HER31_RS06145 PF04358 DsrC like protein HER31_RS06150 PF04077 DsrH like protein HER31_RS06155 PF02635 DsrE/DsrF-like family HER31_RS06160 PF02635 DsrE/DsrF-like family HER31_RS06165 PF01027 Inhibitor of apoptosis-promoting Bax1 HER31_RS06180 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS06185 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS06190 PF00005 ABC transporter HER31_RS06195 PF02335 Cytochrome c552 HER31_RS06200 PF00271 Helicase conserved C-terminal domain HER31_RS06200 PF00270 DEAD/DEAH box helicase HER31_RS06205 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS06205 PF00072 Response regulator receiver domain HER31_RS06215 PF07715 TonB-dependent Receptor Plug Domain HER31_RS06215 PF00593 TonB dependent receptor HER31_RS06220 PF00005 ABC transporter HER31_RS06225 PF01032 FecCD transport family HER31_RS06230 PF01497 Periplasmic binding protein HER31_RS06235 PF00664 ABC transporter transmembrane region HER31_RS06235 PF00005 ABC transporter HER31_RS06245 PF01368 DHH family HER31_RS06245 PF02833 DHHA2 domain HER31_RS06255 PF03793 PASTA domain HER31_RS06255 PF00069 Protein kinase domain HER31_RS06260 PF00072 Response regulator receiver domain HER31_RS06260 PF00486 Transcriptional regulatory protein, C terminal HER31_RS06285 PF05230 MASE2 domain HER31_RS06285 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS06320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS06320 PF03466 LysR substrate binding domain HER31_RS06325 PF00753 Metallo-beta-lactamase superfamily HER31_RS06325 PF16123 Hydroxyacylglutathione hydrolase C-terminus HER31_RS06330 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HER31_RS06350 PF01554 MatE HER31_RS06355 PF00677 Lumazine binding domain HER31_RS06370 PF03881 Fructosamine kinase HER31_RS06375 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HER31_RS06375 PF03129 Anticodon binding domain HER31_RS06375 PF02824 TGS domain HER31_RS06375 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HER31_RS06380 PF00707 Translation initiation factor IF-3, C-terminal domain HER31_RS06380 PF05198 Translation initiation factor IF-3, N-terminal domain HER31_RS06385 PF01632 Ribosomal protein L35 HER31_RS06390 PF00453 Ribosomal protein L20 HER31_RS06405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HER31_RS06405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HER31_RS06410 PF01784 NIF3 (NGG1p interacting factor 3) HER31_RS06420 PF00117 Glutamine amidotransferase class-I HER31_RS06420 PF03352 Methyladenine glycosylase HER31_RS06420 PF13302 Acetyltransferase (GNAT) domain HER31_RS06420 PF00958 GMP synthase C terminal domain HER31_RS06420 PF13673 Acetyltransferase (GNAT) domain HER31_RS06440 PF03471 Transporter associated domain HER31_RS06440 PF02080 TrkA-C domain HER31_RS06440 PF00999 Sodium/hydrogen exchanger family HER31_RS06480 PF07726 ATPase family associated with various cellular activities (AAA) HER31_RS06480 PF17863 AAA lid domain HER31_RS06485 PF01588 Putative tRNA binding domain HER31_RS06485 PF09334 tRNA synthetases class I (M) HER31_RS06490 PF10609 NUBPL iron-transfer P-loop NTPase HER31_RS06495 PF00485 Phosphoribulokinase / Uridine kinase family HER31_RS06500 PF00692 dUTPase HER31_RS06505 PF01063 Amino-transferase class IV HER31_RS06510 PF02618 YceG-like family HER31_RS06515 PF02223 Thymidylate kinase HER31_RS06520 PF09115 DNA polymerase III, delta subunit, C terminal HER31_RS06530 PF01026 TatD related DNase HER31_RS06535 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HER31_RS06535 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HER31_RS06535 PF01189 16S rRNA methyltransferase RsmB/F HER31_RS06540 PF07670 Nucleoside recognition HER31_RS06545 PF02470 MlaD protein HER31_RS06550 PF04403 Paraquat-inducible protein A HER31_RS06555 PF04403 Paraquat-inducible protein A HER31_RS06560 PF13185 GAF domain HER31_RS06570 PF17516 ProQ C-terminal domain HER31_RS06570 PF04352 ProQ/FINO family HER31_RS06575 PF11818 C-terminal domain of tail specific protease (DUF3340) HER31_RS06575 PF00595 PDZ domain HER31_RS06575 PF03572 Peptidase family S41 HER31_RS06575 PF17804 Tail specific protease N-terminal domain HER31_RS06580 PF00209 Sodium:neurotransmitter symporter family HER31_RS06585 PF11940 Domain of unknown function (DUF3458) Ig-like fold HER31_RS06585 PF01433 Peptidase family M1 domain HER31_RS06585 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HER31_RS06600 PF07044 Protein of unknown function (DUF1329) HER31_RS06610 PF03176 MMPL family HER31_RS06615 PF05088 Bacterial NAD-glutamate dehydrogenase HER31_RS06620 PF01180 Dihydroorotate dehydrogenase HER31_RS06625 PF07126 Cell-division protein ZapC HER31_RS06630 PF10672 S-adenosylmethionine-dependent methyltransferase HER31_RS06630 PF02926 THUMP domain HER31_RS06630 PF01170 Putative RNA methylase family UPF0020 HER31_RS06650 PF04957 Ribosome modulation factor HER31_RS06655 PF00255 Glutathione peroxidase HER31_RS06660 PF07977 FabA-like domain HER31_RS06665 PF05362 Lon protease (S16) C-terminal proteolytic domain HER31_RS06665 PF13654 AAA domain HER31_RS06690 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS06690 PF00072 Response regulator receiver domain HER31_RS06695 PF12794 Mechanosensitive ion channel inner membrane domain 1 HER31_RS06695 PF12795 Mechanosensitive ion channel porin domain HER31_RS06695 PF00924 Mechanosensitive ion channel HER31_RS06705 PF00115 Cytochrome C and Quinol oxidase polypeptide I HER31_RS06730 PF00403 Heavy-metal-associated domain HER31_RS06745 PF00027 Cyclic nucleotide-binding domain HER31_RS06745 PF13545 Crp-like helix-turn-helix domain HER31_RS06750 PF00582 Universal stress protein family HER31_RS06755 PF01171 PP-loop family HER31_RS06770 PF08402 TOBE domain HER31_RS06770 PF00005 ABC transporter HER31_RS06775 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS06780 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS06785 PF13416 Bacterial extracellular solute-binding protein HER31_RS06790 PF00155 Aminotransferase class I and II HER31_RS06805 PF00005 ABC transporter HER31_RS06815 PF13091 PLD-like domain HER31_RS06820 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HER31_RS06830 PF12806 Acetyl-CoA dehydrogenase C-terminal like HER31_RS06830 PF02770 Acyl-CoA dehydrogenase, middle domain HER31_RS06830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HER31_RS06830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HER31_RS06835 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HER31_RS06840 PF18073 Rubredoxin metal binding domain HER31_RS06850 PF00216 Bacterial DNA-binding protein HER31_RS06855 PF00575 S1 RNA binding domain HER31_RS06860 PF02224 Cytidylate kinase HER31_RS06865 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HER31_RS06870 PF00155 Aminotransferase class I and II HER31_RS06875 PF00266 Aminotransferase class-V HER31_RS06880 PF00521 DNA gyrase/topoisomerase IV, subunit A HER31_RS06880 PF03989 DNA gyrase C-terminal domain, beta-propeller HER31_RS06890 PF13419 Haloacid dehalogenase-like hydrolase HER31_RS06895 PF02867 Ribonucleotide reductase, barrel domain HER31_RS06895 PF03477 ATP cone domain HER31_RS06895 PF00317 Ribonucleotide reductase, all-alpha domain HER31_RS06900 PF00268 Ribonucleotide reductase, small chain HER31_RS06905 PF00111 2Fe-2S iron-sulfur cluster binding domain HER31_RS06920 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER31_RS06920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HER31_RS06925 PF01343 Peptidase family S49 HER31_RS06930 PF00710 Asparaginase, N-terminal HER31_RS06930 PF17763 Glutaminase/Asparaginase C-terminal domain HER31_RS06935 PF07023 Protein of unknown function (DUF1315) HER31_RS06945 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HER31_RS06945 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HER31_RS06955 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HER31_RS06955 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HER31_RS06965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS06965 PF03466 LysR substrate binding domain HER31_RS06995 PF00873 AcrB/AcrD/AcrF family HER31_RS07000 PF13533 Biotin-lipoyl like HER31_RS07005 PF03466 LysR substrate binding domain HER31_RS07005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS07010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS07010 PF03466 LysR substrate binding domain HER31_RS07025 PF01081 KDPG and KHG aldolase HER31_RS07030 PF00920 Dehydratase family HER31_RS07035 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HER31_RS07040 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HER31_RS07040 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HER31_RS07045 PF01380 SIS domain HER31_RS07045 PF01418 Helix-turn-helix domain, rpiR family HER31_RS07050 PF02887 Pyruvate kinase, alpha/beta domain HER31_RS07050 PF00224 Pyruvate kinase, barrel domain HER31_RS07060 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HER31_RS07065 PF00004 ATPase family associated with various cellular activities (AAA) HER31_RS07065 PF12002 MgsA AAA+ ATPase C terminal HER31_RS07065 PF16193 AAA C-terminal domain HER31_RS07070 PF03548 Outer membrane lipoprotein carrier protein LolA HER31_RS07075 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HER31_RS07075 PF17854 FtsK alpha domain HER31_RS07075 PF01580 FtsK/SpoIIIE family HER31_RS07075 PF09397 Ftsk gamma domain HER31_RS07080 PF01037 Lrp/AsnC ligand binding domain HER31_RS07085 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HER31_RS07085 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HER31_RS07090 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER31_RS07095 PF00664 ABC transporter transmembrane region HER31_RS07095 PF00005 ABC transporter HER31_RS07100 PF00005 ABC transporter HER31_RS07100 PF00664 ABC transporter transmembrane region HER31_RS07110 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HER31_RS07115 PF04377 Arginine-tRNA-protein transferase, C terminus HER31_RS07115 PF04376 Arginine-tRNA-protein transferase, N terminus HER31_RS07120 PF01176 Translation initiation factor 1A / IF-1 HER31_RS07125 PF08753 NikR C terminal nickel binding domain HER31_RS07125 PF01402 Ribbon-helix-helix protein, copG family HER31_RS07130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HER31_RS07135 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS07140 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS07140 PF12911 N-terminal TM domain of oligopeptide transport permease C HER31_RS07145 PF00005 ABC transporter HER31_RS07145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HER31_RS07150 PF00004 ATPase family associated with various cellular activities (AAA) HER31_RS07150 PF10431 C-terminal, D2-small domain, of ClpB protein HER31_RS07150 PF02861 Clp amino terminal domain, pathogenicity island component HER31_RS07150 PF17871 AAA lid domain HER31_RS07150 PF07724 AAA domain (Cdc48 subfamily) HER31_RS07155 PF02617 ATP-dependent Clp protease adaptor protein ClpS HER31_RS07160 PF00313 'Cold-shock' DNA-binding domain HER31_RS07165 PF00180 Isocitrate/isopropylmalate dehydrogenase HER31_RS07170 PF00849 RNA pseudouridylate synthase HER31_RS07180 PF04356 Protein of unknown function (DUF489) HER31_RS07185 PF00206 Lyase HER31_RS07185 PF08328 Adenylosuccinate lyase C-terminal HER31_RS07190 PF08007 Cupin superfamily protein HER31_RS07200 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HER31_RS07200 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HER31_RS07205 PF10722 Putative bacterial sensory transduction regulator HER31_RS07215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HER31_RS07240 PF00849 RNA pseudouridylate synthase HER31_RS07255 PF02472 Biopolymer transport protein ExbD/TolR HER31_RS07260 PF01618 MotA/TolQ/ExbB proton channel family HER31_RS07265 PF01618 MotA/TolQ/ExbB proton channel family HER31_RS07275 PF01979 Amidohydrolase family HER31_RS07290 PF04542 Sigma-70 region 2 HER31_RS07290 PF04539 Sigma-70 region 3 HER31_RS07290 PF04545 Sigma-70, region 4 HER31_RS07290 PF00140 Sigma-70 factor, region 1.2 HER31_RS07310 PF02743 Cache domain HER31_RS07310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HER31_RS07310 PF00672 HAMP domain HER31_RS07315 PF00672 HAMP domain HER31_RS07315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HER31_RS07315 PF02743 Cache domain HER31_RS07320 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HER31_RS07320 PF00271 Helicase conserved C-terminal domain HER31_RS07320 PF04408 Helicase associated domain (HA2) HER31_RS07320 PF11898 Domain of unknown function (DUF3418) HER31_RS07320 PF00270 DEAD/DEAH box helicase HER31_RS07325 PF01227 GTP cyclohydrolase I HER31_RS07335 PF04209 homogentisate 1,2-dioxygenase HER31_RS07345 PF01693 Caulimovirus viroplasmin HER31_RS07350 PF00171 Aldehyde dehydrogenase family HER31_RS07350 PF00465 Iron-containing alcohol dehydrogenase HER31_RS07355 PF00106 short chain dehydrogenase HER31_RS07360 PF13302 Acetyltransferase (GNAT) domain HER31_RS07365 PF00293 NUDIX domain HER31_RS07370 PF03701 Uncharacterised protein family (UPF0181) HER31_RS07405 PF00672 HAMP domain HER31_RS07405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HER31_RS07405 PF17200 Single Cache domain 2 HER31_RS07420 PF09997 Predicted membrane protein (DUF2238) HER31_RS07425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS07425 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS07425 PF00672 HAMP domain HER31_RS07425 PF01627 Hpt domain HER31_RS07425 PF00072 Response regulator receiver domain HER31_RS07425 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HER31_RS07430 PF00664 ABC transporter transmembrane region HER31_RS07430 PF00005 ABC transporter HER31_RS07435 PF00664 ABC transporter transmembrane region HER31_RS07435 PF00005 ABC transporter HER31_RS07440 PF03459 TOBE domain HER31_RS07445 PF00425 chorismate binding enzyme HER31_RS07445 PF04715 Anthranilate synthase component I, N terminal region HER31_RS07450 PF00578 AhpC/TSA family HER31_RS07455 PF00293 NUDIX domain HER31_RS07475 PF02424 ApbE family HER31_RS07480 PF01336 OB-fold nucleic acid binding domain HER31_RS07480 PF00152 tRNA synthetases class II (D, K and N) HER31_RS07490 PF11756 Nitrous oxide-stimulated promoter HER31_RS07500 PF00462 Glutaredoxin HER31_RS07505 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HER31_RS07505 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HER31_RS07510 PF06798 PrkA serine protein kinase C-terminal domain HER31_RS07510 PF08298 PrkA AAA domain HER31_RS07515 PF04285 Protein of unknown function (DUF444) HER31_RS07520 PF04293 SpoVR like protein HER31_RS07525 PF07840 FadR C-terminal domain HER31_RS07525 PF00392 Bacterial regulatory proteins, gntR family HER31_RS07530 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HER31_RS07535 PF02600 Disulfide bond formation protein DsbB HER31_RS07540 PF03692 Putative zinc- or iron-chelating domain HER31_RS07545 PF13406 Transglycosylase SLT domain HER31_RS07550 PF05166 YcgL domain HER31_RS07555 PF03775 Septum formation inhibitor MinC, C-terminal domain HER31_RS07555 PF05209 Septum formation inhibitor MinC, N-terminal domain HER31_RS07560 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HER31_RS07565 PF03776 Septum formation topological specificity factor MinE HER31_RS07570 PF00501 AMP-binding enzyme HER31_RS07570 PF13193 AMP-binding enzyme C-terminal domain HER31_RS07575 PF01612 3'-5' exonuclease HER31_RS07575 PF00570 HRDC domain HER31_RS07580 PF13193 AMP-binding enzyme C-terminal domain HER31_RS07580 PF00501 AMP-binding enzyme HER31_RS07600 PF00814 Glycoprotease family HER31_RS07605 PF04851 Type III restriction enzyme, res subunit HER31_RS07605 PF13307 Helicase C-terminal domain HER31_RS07610 PF01634 ATP phosphoribosyltransferase HER31_RS07610 PF08029 HisG, C-terminal domain HER31_RS07615 PF00815 Histidinol dehydrogenase HER31_RS07620 PF00155 Aminotransferase class I and II HER31_RS07625 PF00475 Imidazoleglycerol-phosphate dehydratase HER31_RS07625 PF08645 Polynucleotide kinase 3 phosphatase HER31_RS07630 PF00117 Glutamine amidotransferase class-I HER31_RS07635 PF00977 Histidine biosynthesis protein HER31_RS07640 PF00977 Histidine biosynthesis protein HER31_RS07645 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HER31_RS07645 PF01502 Phosphoribosyl-AMP cyclohydrolase HER31_RS07655 PF00216 Bacterial DNA-binding protein HER31_RS07660 PF03483 B3/4 domain HER31_RS07660 PF03484 tRNA synthetase B5 domain HER31_RS07660 PF03147 Ferredoxin-fold anticodon binding domain HER31_RS07660 PF01588 Putative tRNA binding domain HER31_RS07660 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HER31_RS07665 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HER31_RS07665 PF01409 tRNA synthetases class II core domain (F) HER31_RS07670 PF00672 HAMP domain HER31_RS07670 PF12729 Four helix bundle sensory module for signal transduction HER31_RS07670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HER31_RS07685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HER31_RS07685 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HER31_RS07690 PF08543 Phosphomethylpyrimidine kinase HER31_RS07710 PF01131 DNA topoisomerase HER31_RS07710 PF01751 Toprim domain HER31_RS07715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS07715 PF03466 LysR substrate binding domain HER31_RS07720 PF00962 Adenosine/AMP deaminase HER31_RS07725 PF00005 ABC transporter HER31_RS07725 PF00664 ABC transporter transmembrane region HER31_RS07735 PF07130 YebG protein HER31_RS07745 PF00486 Transcriptional regulatory protein, C terminal HER31_RS07745 PF00072 Response regulator receiver domain HER31_RS07750 PF00672 HAMP domain HER31_RS07750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS07750 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS07750 PF16750 Sensor domain of 2-component histidine kinase HER31_RS07770 PF00669 Bacterial flagellin N-terminal helical region HER31_RS07775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HER31_RS07775 PF00460 Flagella basal body rod protein HER31_RS07780 PF10135 Rod binding protein HER31_RS07780 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HER31_RS07785 PF02119 Flagellar P-ring protein HER31_RS07790 PF02107 Flagellar L-ring protein HER31_RS07795 PF00460 Flagella basal body rod protein HER31_RS07795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HER31_RS07800 PF00460 Flagella basal body rod protein HER31_RS07800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HER31_RS07805 PF07559 Flagellar basal body protein FlaE HER31_RS07805 PF00460 Flagella basal body rod protein HER31_RS07805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HER31_RS07815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HER31_RS07815 PF00460 Flagella basal body rod protein HER31_RS07820 PF00460 Flagella basal body rod protein HER31_RS07830 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HER31_RS07840 PF00691 OmpA family HER31_RS07840 PF13677 Membrane MotB of proton-channel complex MotA/MotB HER31_RS07845 PF01618 MotA/TolQ/ExbB proton channel family HER31_RS07850 PF04542 Sigma-70 region 2 HER31_RS07850 PF04545 Sigma-70, region 4 HER31_RS07870 PF02561 Flagellar protein FliS HER31_RS07875 PF07195 Flagellar hook-associated protein 2 C-terminus HER31_RS07875 PF02465 Flagellar hook-associated protein 2 N-terminus HER31_RS07880 PF00669 Bacterial flagellin N-terminal helical region HER31_RS07880 PF00700 Bacterial flagellin C-terminal helical region HER31_RS07900 PF18269 T3SS EscN ATPase C-terminal domain HER31_RS07900 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HER31_RS07910 PF14842 FliG N-terminal domain HER31_RS07910 PF01706 FliG C-terminal domain HER31_RS07910 PF14841 FliG middle domain HER31_RS07915 PF01514 Secretory protein of YscJ/FliF family HER31_RS07915 PF08345 Flagellar M-ring protein C-terminal HER31_RS07920 PF02049 Flagellar hook-basal body complex protein FliE HER31_RS07925 PF02954 Bacterial regulatory protein, Fis family HER31_RS07925 PF00158 Sigma-54 interaction domain HER31_RS07925 PF00072 Response regulator receiver domain HER31_RS07930 PF00691 OmpA family HER31_RS07930 PF01389 OmpA-like transmembrane domain HER31_RS07935 PF06406 StbA protein HER31_RS07955 PF00813 FliP family HER31_RS07960 PF01313 Bacterial export proteins, family 3 HER31_RS07965 PF01311 Bacterial export proteins, family 1 HER31_RS07970 PF01312 FlhB HrpN YscU SpaS Family HER31_RS07975 PF00771 FHIPEP family HER31_RS08000 PF01381 Helix-turn-helix HER31_RS08050 PF00929 Exonuclease HER31_RS08055 PF00075 RNase H HER31_RS08060 PF08241 Methyltransferase domain HER31_RS08065 PF00753 Metallo-beta-lactamase superfamily HER31_RS08065 PF16123 Hydroxyacylglutathione hydrolase C-terminus HER31_RS08070 PF01476 LysM domain HER31_RS08070 PF01464 Transglycosylase SLT domain HER31_RS08075 PF12679 ABC-2 family transporter protein HER31_RS08080 PF00005 ABC transporter HER31_RS08100 PF03737 Aldolase/RraA HER31_RS08110 PF03441 FAD binding domain of DNA photolyase HER31_RS08110 PF00875 DNA photolyase HER31_RS08175 PF00005 ABC transporter HER31_RS08175 PF09383 NIL domain HER31_RS08180 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS08185 PF03180 NLPA lipoprotein HER31_RS08190 PF04011 LemA family HER31_RS08195 PF01435 Peptidase family M48 HER31_RS08200 PF01263 Aldose 1-epimerase HER31_RS08205 PF00392 Bacterial regulatory proteins, gntR family HER31_RS08220 PF05199 GMC oxidoreductase HER31_RS08220 PF00732 GMC oxidoreductase HER31_RS08225 PF00929 Exonuclease HER31_RS08230 PF01380 SIS domain HER31_RS08230 PF00571 CBS domain HER31_RS08250 PF00474 Sodium:solute symporter family HER31_RS08270 PF01370 NAD dependent epimerase/dehydratase family HER31_RS08275 PF12826 Helix-hairpin-helix motif HER31_RS08275 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HER31_RS08275 PF03120 NAD-dependent DNA ligase OB-fold domain HER31_RS08275 PF00533 BRCA1 C Terminus (BRCT) domain HER31_RS08275 PF01653 NAD-dependent DNA ligase adenylation domain HER31_RS08280 PF04354 ZipA, C-terminal FtsZ-binding domain HER31_RS08285 PF06470 SMC proteins Flexible Hinge Domain HER31_RS08285 PF02463 RecF/RecN/SMC N terminal domain HER31_RS08300 PF01554 MatE HER31_RS08305 PF00561 alpha/beta hydrolase fold HER31_RS08325 PF00291 Pyridoxal-phosphate dependent enzyme HER31_RS08330 PF00381 PTS HPr component phosphorylation site HER31_RS08335 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HER31_RS08340 PF03960 ArsC family HER31_RS08345 PF01546 Peptidase family M20/M25/M40 HER31_RS08345 PF07687 Peptidase dimerisation domain HER31_RS08350 PF02557 D-alanyl-D-alanine carboxypeptidase HER31_RS08355 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HER31_RS08370 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HER31_RS08390 PF13538 UvrD-like helicase C-terminal domain HER31_RS08395 PF12705 PD-(D/E)XK nuclease superfamily HER31_RS08395 PF00580 UvrD/REP helicase N-terminal domain HER31_RS08395 PF13361 UvrD-like helicase C-terminal domain HER31_RS08400 PF17946 RecC C-terminal domain HER31_RS08405 PF00854 POT family HER31_RS08415 PF03466 LysR substrate binding domain HER31_RS08415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS08440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS08440 PF00384 Molybdopterin oxidoreductase HER31_RS08440 PF01568 Molydopterin dinucleotide binding domain HER31_RS08445 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HER31_RS08450 PF03264 NapC/NirT cytochrome c family, N-terminal region HER31_RS08475 PF00873 AcrB/AcrD/AcrF family HER31_RS08485 PF06804 NlpB/DapX lipoprotein HER31_RS08490 PF00701 Dihydrodipicolinate synthetase family HER31_RS08495 PF01842 ACT domain HER31_RS08500 PF00578 AhpC/TSA family HER31_RS08510 PF01594 AI-2E family transporter HER31_RS08520 PF01435 Peptidase family M48 HER31_RS08520 PF13181 Tetratricopeptide repeat HER31_RS08525 PF03960 ArsC family HER31_RS08545 PF16925 Tetracyclin repressor-like, C-terminal domain HER31_RS08545 PF00440 Bacterial regulatory proteins, tetR family HER31_RS08550 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER31_RS08550 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HER31_RS08555 PF00230 Major intrinsic protein HER31_RS08560 PF08139 Prokaryotic membrane lipoprotein lipid attachment site HER31_RS08560 PF02321 Outer membrane efflux protein HER31_RS08565 PF00873 AcrB/AcrD/AcrF family HER31_RS08575 PF03466 LysR substrate binding domain HER31_RS08575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS08580 PF00308 Bacterial dnaA protein HER31_RS08595 PF00860 Permease family HER31_RS08605 PF00586 AIR synthase related protein, N-terminal domain HER31_RS08605 PF02769 AIR synthase related protein, C-terminal domain HER31_RS08610 PF00551 Formyl transferase HER31_RS08615 PF03144 Elongation factor Tu domain 2 HER31_RS08615 PF00009 Elongation factor Tu GTP binding domain HER31_RS08615 PF00679 Elongation factor G C-terminus HER31_RS08615 PF14492 Elongation Factor G, domain II HER31_RS08615 PF03764 Elongation factor G, domain IV HER31_RS08620 PF00912 Transglycosylase HER31_RS08620 PF00905 Penicillin binding protein transpeptidase domain HER31_RS08620 PF06832 Penicillin-Binding Protein C-terminus Family HER31_RS08625 PF01996 F420-0:Gamma-glutamyl ligase HER31_RS08625 PF00881 Nitroreductase family HER31_RS08630 PF01546 Peptidase family M20/M25/M40 HER31_RS08630 PF07687 Peptidase dimerisation domain HER31_RS08635 PF09364 XFP N-terminal domain HER31_RS08635 PF09363 XFP C-terminal domain HER31_RS08635 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase HER31_RS08645 PF13344 Haloacid dehalogenase-like hydrolase HER31_RS08660 PF13537 Glutamine amidotransferase domain HER31_RS08660 PF00733 Asparagine synthase HER31_RS08665 PF01053 Cys/Met metabolism PLP-dependent enzyme HER31_RS08670 PF00999 Sodium/hydrogen exchanger family HER31_RS08675 PF04073 Aminoacyl-tRNA editing domain HER31_RS08680 PF00455 DeoR C terminal sensor domain HER31_RS08680 PF08220 DeoR-like helix-turn-helix domain HER31_RS08685 PF00593 TonB dependent receptor HER31_RS08685 PF07715 TonB-dependent Receptor Plug Domain HER31_RS08690 PF01209 ubiE/COQ5 methyltransferase family HER31_RS08695 PF00593 TonB dependent receptor HER31_RS08695 PF07715 TonB-dependent Receptor Plug Domain HER31_RS08700 PF00593 TonB dependent receptor HER31_RS08700 PF07715 TonB-dependent Receptor Plug Domain HER31_RS08705 PF00593 TonB dependent receptor HER31_RS08705 PF07715 TonB-dependent Receptor Plug Domain HER31_RS08715 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HER31_RS08715 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HER31_RS08720 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HER31_RS08720 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HER31_RS08725 PF04237 YjbR HER31_RS08730 PF00107 Zinc-binding dehydrogenase HER31_RS08730 PF08240 Alcohol dehydrogenase GroES-like domain HER31_RS08735 PF03466 LysR substrate binding domain HER31_RS08735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS08740 PF00378 Enoyl-CoA hydratase/isomerase HER31_RS08740 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HER31_RS08740 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HER31_RS08745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HER31_RS08745 PF02770 Acyl-CoA dehydrogenase, middle domain HER31_RS08745 PF12806 Acetyl-CoA dehydrogenase C-terminal like HER31_RS08745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HER31_RS08750 PF12833 Helix-turn-helix domain HER31_RS08750 PF02311 AraC-like ligand binding domain HER31_RS08760 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 HER31_RS08760 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain HER31_RS08770 PF10689 Protein of unknown function (DUF2496) HER31_RS08780 PF01844 HNH endonuclease HER31_RS08810 PF12697 Alpha/beta hydrolase family HER31_RS08820 PF00196 Bacterial regulatory proteins, luxR family HER31_RS08820 PF00072 Response regulator receiver domain HER31_RS08825 PF00989 PAS fold HER31_RS08825 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS08825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS08830 PF02424 ApbE family HER31_RS08835 PF00890 FAD binding domain HER31_RS08835 PF04205 FMN-binding domain HER31_RS08835 PF03358 NADPH-dependent FMN reductase HER31_RS08850 PF01169 Uncharacterized protein family UPF0016 HER31_RS08855 PF01565 FAD binding domain HER31_RS08855 PF02913 FAD linked oxidases, C-terminal domain HER31_RS08860 PF02652 L-lactate permease HER31_RS08865 PF00958 GMP synthase C terminal domain HER31_RS08865 PF00117 Glutamine amidotransferase class-I HER31_RS08865 PF02540 NAD synthase HER31_RS08870 PF00571 CBS domain HER31_RS08870 PF00478 IMP dehydrogenase / GMP reductase domain HER31_RS08875 PF13742 OB-fold nucleic acid binding domain HER31_RS08875 PF02601 Exonuclease VII, large subunit HER31_RS08880 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS08880 PF17151 Periplasmic sensor domain HER31_RS08885 PF01926 50S ribosome-binding GTPase HER31_RS08885 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HER31_RS08890 PF13360 PQQ-like domain HER31_RS08895 PF09976 Tetratricopeptide repeat-like domain HER31_RS08900 PF03129 Anticodon binding domain HER31_RS08900 PF13393 Histidyl-tRNA synthetase HER31_RS08905 PF04551 GcpE protein HER31_RS08910 PF13464 Domain of unknown function (DUF4115) HER31_RS08920 PF04055 Radical SAM superfamily HER31_RS08925 PF01595 Cyclin M transmembrane N-terminal domain HER31_RS08925 PF03471 Transporter associated domain HER31_RS08925 PF00571 CBS domain HER31_RS08930 PF00334 Nucleoside diphosphate kinase HER31_RS08940 PF04384 Iron-sulphur cluster assembly HER31_RS08945 PF00111 2Fe-2S iron-sulfur cluster binding domain HER31_RS08950 PF00012 Hsp70 protein HER31_RS08955 PF00226 DnaJ domain HER31_RS08955 PF07743 HSCB C-terminal oligomerisation domain HER31_RS08960 PF01521 Iron-sulphur cluster biosynthesis HER31_RS08965 PF01592 NifU-like N terminal domain HER31_RS08970 PF00266 Aminotransferase class-V HER31_RS08975 PF02082 Transcriptional regulator HER31_RS08980 PF00588 SpoU rRNA Methylase family HER31_RS08985 PF00459 Inositol monophosphatase family HER31_RS09005 PF07694 5TMR of 5TMR-LYT HER31_RS09005 PF06580 Histidine kinase HER31_RS09010 PF00072 Response regulator receiver domain HER31_RS09010 PF04397 LytTr DNA-binding domain HER31_RS09015 PF00216 Bacterial DNA-binding protein HER31_RS09020 PF02554 Carbon starvation protein CstA HER31_RS09030 PF10414 Sirohaem synthase dimerisation region HER31_RS09030 PF14824 Sirohaem biosynthesis protein central HER31_RS09030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HER31_RS09040 PF02355 Protein export membrane protein HER31_RS09040 PF07549 SecD/SecF GG Motif HER31_RS09045 PF07549 SecD/SecF GG Motif HER31_RS09045 PF13721 SecD export protein N-terminal TM region HER31_RS09045 PF02355 Protein export membrane protein HER31_RS09050 PF02699 Preprotein translocase subunit HER31_RS09055 PF01702 Queuine tRNA-ribosyltransferase HER31_RS09060 PF02547 Queuosine biosynthesis protein HER31_RS09075 PF00463 Isocitrate lyase family HER31_RS09080 PF01274 Malate synthase HER31_RS09085 PF03976 Polyphosphate kinase 2 (PPK2) HER31_RS09100 PF00486 Transcriptional regulatory protein, C terminal HER31_RS09100 PF00072 Response regulator receiver domain HER31_RS09105 PF00672 HAMP domain HER31_RS09105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS09105 PF18698 Histidine kinase sensor domain HER31_RS09105 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS09105 PF00989 PAS fold HER31_RS09110 PF01895 PhoU domain HER31_RS09115 PF00005 ABC transporter HER31_RS09120 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS09125 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS09130 PF13090 Polyphosphate kinase C-terminal domain 2 HER31_RS09130 PF13089 Polyphosphate kinase N-terminal domain HER31_RS09130 PF02503 Polyphosphate kinase middle domain HER31_RS09130 PF17941 Polyphosphate kinase C-terminal domain 1 HER31_RS09135 PF02541 Ppx/GppA phosphatase family HER31_RS09140 PF12849 PBP superfamily domain HER31_RS09145 PF11808 Phosphate regulon sensor protein PhoR HER31_RS09145 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS09145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS09145 PF00989 PAS fold HER31_RS09150 PF00072 Response regulator receiver domain HER31_RS09150 PF00486 Transcriptional regulatory protein, C terminal HER31_RS09155 PF00267 Gram-negative porin HER31_RS09160 PF04381 Putative exonuclease, RdgC HER31_RS09170 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS09175 PF11892 Domain of unknown function (DUF3412) HER31_RS09175 PF03641 Possible lysine decarboxylase HER31_RS09175 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HER31_RS09180 PF01367 5'-3' exonuclease, C-terminal SAM fold HER31_RS09180 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HER31_RS09185 PF00106 short chain dehydrogenase HER31_RS09195 PF05935 Arylsulfotransferase (ASST) HER31_RS09195 PF17425 Arylsulfotransferase Ig-like domain HER31_RS09200 PF16859 Tetracyclin repressor-like, C-terminal domain HER31_RS09200 PF00440 Bacterial regulatory proteins, tetR family HER31_RS09215 PF00375 Sodium:dicarboxylate symporter family HER31_RS09225 PF00326 Prolyl oligopeptidase family HER31_RS09225 PF07676 WD40-like Beta Propeller Repeat HER31_RS09230 PF00180 Isocitrate/isopropylmalate dehydrogenase HER31_RS09230 PF18324 Hypothetical protein TT1725 HER31_RS09250 PF01728 FtsJ-like methyltransferase HER31_RS09250 PF18125 RlmM ferredoxin-like domain HER31_RS09255 PF04241 Protein of unknown function (DUF423) HER31_RS09265 PF03466 LysR substrate binding domain HER31_RS09265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS09275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HER31_RS09280 PF00873 AcrB/AcrD/AcrF family HER31_RS09285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS09285 PF03466 LysR substrate binding domain HER31_RS09295 PF04116 Fatty acid hydroxylase superfamily HER31_RS09315 PF02163 Peptidase family M50 HER31_RS09315 PF17820 PDZ domain HER31_RS09320 PF02810 SEC-C motif HER31_RS09320 PF07516 SecA Wing and Scaffold domain HER31_RS09320 PF07517 SecA DEAD-like domain HER31_RS09320 PF01043 SecA preprotein cross-linking domain HER31_RS09325 PF00593 TonB dependent receptor HER31_RS09325 PF07715 TonB-dependent Receptor Plug Domain HER31_RS09360 PF00005 ABC transporter HER31_RS09365 PF00950 ABC 3 transport family HER31_RS09375 PF00072 Response regulator receiver domain HER31_RS09380 PF14765 Polyketide synthase dehydratase HER31_RS09380 PF00550 Phosphopantetheine attachment site HER31_RS09380 PF08659 KR domain HER31_RS09380 PF02801 Beta-ketoacyl synthase, C-terminal domain HER31_RS09380 PF00109 Beta-ketoacyl synthase, N-terminal domain HER31_RS09380 PF16197 Ketoacyl-synthetase C-terminal extension HER31_RS09380 PF08240 Alcohol dehydrogenase GroES-like domain HER31_RS09380 PF00698 Acyl transferase domain HER31_RS09405 PF00793 DAHP synthetase I family HER31_RS09415 PF04247 Invasion gene expression up-regulator, SirB HER31_RS09420 PF13847 Methyltransferase domain HER31_RS09420 PF17827 PrmC N-terminal domain HER31_RS09425 PF03462 PCRF domain HER31_RS09425 PF00472 RF-1 domain HER31_RS09430 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HER31_RS09430 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HER31_RS09430 PF01488 Shikimate / quinate 5-dehydrogenase HER31_RS09435 PF03550 Outer membrane lipoprotein LolB HER31_RS09440 PF08544 GHMP kinases C terminal HER31_RS09440 PF00288 GHMP kinases N terminal domain HER31_RS09450 PF14572 Phosphoribosyl synthetase-associated domain HER31_RS09450 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HER31_RS09455 PF02872 5'-nucleotidase, C-terminal domain HER31_RS09455 PF00149 Calcineurin-like phosphoesterase HER31_RS09460 PF01386 Ribosomal L25p family HER31_RS09460 PF14693 Ribosomal protein TL5, C-terminal domain HER31_RS09465 PF01195 Peptidyl-tRNA hydrolase HER31_RS09470 PF01926 50S ribosome-binding GTPase HER31_RS09470 PF06071 Protein of unknown function (DUF933) HER31_RS09540 PF00440 Bacterial regulatory proteins, tetR family HER31_RS09540 PF16859 Tetracyclin repressor-like, C-terminal domain HER31_RS09550 PF00873 AcrB/AcrD/AcrF family HER31_RS09555 PF08173 Membrane bound YbgT-like protein HER31_RS09560 PF02322 Cytochrome bd terminal oxidase subunit II HER31_RS09565 PF01654 Cytochrome bd terminal oxidase subunit I HER31_RS09575 PF00246 Zinc carboxypeptidase HER31_RS09575 PF18027 Cytosolic carboxypeptidase N-terminal domain HER31_RS09585 PF01555 DNA methylase HER31_RS09590 PF00175 Oxidoreductase NAD-binding domain HER31_RS09590 PF00111 2Fe-2S iron-sulfur cluster binding domain HER31_RS09590 PF00970 Oxidoreductase FAD-binding domain HER31_RS09600 PF02769 AIR synthase related protein, C-terminal domain HER31_RS09600 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HER31_RS09600 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HER31_RS09605 PF01464 Transglycosylase SLT domain HER31_RS09605 PF00497 Bacterial extracellular solute-binding proteins, family 3 HER31_RS09610 PF14437 MafB19-like deaminase HER31_RS09615 PF00360 Phytochrome region HER31_RS09615 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS09615 PF01590 GAF domain HER31_RS09615 PF00563 EAL domain HER31_RS09625 PF05114 Protein of unknown function (DUF692) HER31_RS09640 PF01132 Elongation factor P (EF-P) OB domain HER31_RS09640 PF08207 Elongation factor P (EF-P) KOW-like domain HER31_RS09640 PF09285 Elongation factor P, C-terminal HER31_RS09645 PF00356 Bacterial regulatory proteins, lacI family HER31_RS09650 PF00294 pfkB family carbohydrate kinase HER31_RS09655 PF13407 Periplasmic binding protein domain HER31_RS09660 PF02653 Branched-chain amino acid transport system / permease component HER31_RS09665 PF00005 ABC transporter HER31_RS09670 PF05025 RbsD / FucU transport protein family HER31_RS09675 PF00483 Nucleotidyl transferase HER31_RS09700 PF07963 Prokaryotic N-terminal methylation motif HER31_RS09700 PF00114 Pilin (bacterial filament) HER31_RS09705 PF05567 Neisseria PilC beta-propeller domain HER31_RS09710 PF00970 Oxidoreductase FAD-binding domain HER31_RS09710 PF00111 2Fe-2S iron-sulfur cluster binding domain HER31_RS09710 PF00175 Oxidoreductase NAD-binding domain HER31_RS09715 PF03063 Prismane/CO dehydrogenase family HER31_RS09720 PF00270 DEAD/DEAH box helicase HER31_RS09720 PF00271 Helicase conserved C-terminal domain HER31_RS09725 PF03606 C4-dicarboxylate anaerobic carrier HER31_RS09740 PF02589 LUD domain HER31_RS09740 PF13183 4Fe-4S dicluster domain HER31_RS09740 PF11870 Domain of unknown function (DUF3390) HER31_RS09745 PF02754 Cysteine-rich domain HER31_RS09750 PF00294 pfkB family carbohydrate kinase HER31_RS09760 PF02626 Carboxyltransferase domain, subdomain A and B HER31_RS09765 PF03746 LamB/YcsF family HER31_RS09770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HER31_RS09770 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER31_RS09785 PF07676 WD40-like Beta Propeller Repeat HER31_RS09785 PF00326 Prolyl oligopeptidase family HER31_RS09790 PF00563 EAL domain HER31_RS09790 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS09790 PF03707 Bacterial signalling protein N terminal repeat HER31_RS09805 PF00762 Ferrochelatase HER31_RS09810 PF05191 Adenylate kinase, active site lid HER31_RS09815 PF00085 Thioredoxin HER31_RS09820 PF00183 Hsp90 protein HER31_RS09820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS09830 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HER31_RS09830 PF07733 Bacterial DNA polymerase III alpha NTPase domain HER31_RS09830 PF11490 DNA polymerase III polC-type N-terminus II HER31_RS09830 PF02811 PHP domain HER31_RS09830 PF00929 Exonuclease HER31_RS09830 PF14579 Helix-hairpin-helix motif HER31_RS09845 PF03783 Curli production assembly/transport component CsgG HER31_RS09860 PF00196 Bacterial regulatory proteins, luxR family HER31_RS09865 PF00149 Calcineurin-like phosphoesterase HER31_RS09865 PF12320 Type 5 capsule protein repressor C-terminal domain HER31_RS09870 PF13476 AAA domain HER31_RS09875 PF03652 Holliday junction resolvase HER31_RS09880 PF02622 Uncharacterized ACR, COG1678 HER31_RS09885 PF01253 Translation initiation factor SUI1 HER31_RS09905 PF13145 PPIC-type PPIASE domain HER31_RS09910 PF00216 Bacterial DNA-binding protein HER31_RS09915 PF05362 Lon protease (S16) C-terminal proteolytic domain HER31_RS09915 PF02190 ATP-dependent protease La (LON) substrate-binding domain HER31_RS09915 PF00004 ATPase family associated with various cellular activities (AAA) HER31_RS09920 PF06689 ClpX C4-type zinc finger HER31_RS09920 PF07724 AAA domain (Cdc48 subfamily) HER31_RS09920 PF10431 C-terminal, D2-small domain, of ClpB protein HER31_RS09925 PF00574 Clp protease HER31_RS09930 PF05698 Bacterial trigger factor protein (TF) C-terminus HER31_RS09930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HER31_RS09930 PF05697 Bacterial trigger factor protein (TF) HER31_RS09950 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HER31_RS09950 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HER31_RS09960 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HER31_RS09965 PF00149 Calcineurin-like phosphoesterase HER31_RS09970 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HER31_RS09980 PF00156 Phosphoribosyl transferase domain HER31_RS09985 PF02674 Colicin V production protein HER31_RS09990 PF05036 Sporulation related domain HER31_RS09995 PF08245 Mur ligase middle domain HER31_RS09995 PF02875 Mur ligase family, glutamate ligase domain HER31_RS10000 PF17848 Acetyl-coA carboxylase zinc finger domain HER31_RS10000 PF01039 Carboxyl transferase domain HER31_RS10005 PF01416 tRNA pseudouridine synthase HER31_RS10015 PF01118 Semialdehyde dehydrogenase, NAD binding domain HER31_RS10015 PF02774 Semialdehyde dehydrogenase, dimerisation domain HER31_RS10020 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HER31_RS10020 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HER31_RS10020 PF11890 Domain of unknown function (DUF3410) HER31_RS10025 PF00109 Beta-ketoacyl synthase, N-terminal domain HER31_RS10025 PF02801 Beta-ketoacyl synthase, C-terminal domain HER31_RS10030 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HER31_RS10030 PF01266 FAD dependent oxidoreductase HER31_RS10055 PF02472 Biopolymer transport protein ExbD/TolR HER31_RS10060 PF01618 MotA/TolQ/ExbB proton channel family HER31_RS10065 PF01618 MotA/TolQ/ExbB proton channel family HER31_RS10090 PF00267 Gram-negative porin HER31_RS10095 PF00136 DNA polymerase family B HER31_RS10095 PF03104 DNA polymerase family B, exonuclease domain HER31_RS10100 PF13307 Helicase C-terminal domain HER31_RS10100 PF06733 DEAD_2 HER31_RS10105 PF01925 Sulfite exporter TauE/SafE HER31_RS10115 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HER31_RS10120 PF00850 Histone deacetylase domain HER31_RS10145 PF01557 Fumarylacetoacetate (FAA) hydrolase family HER31_RS10150 PF01590 GAF domain HER31_RS10150 PF00158 Sigma-54 interaction domain HER31_RS10155 PF00301 Rubredoxin HER31_RS10155 PF00753 Metallo-beta-lactamase superfamily HER31_RS10155 PF00258 Flavodoxin HER31_RS10160 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER31_RS10160 PF18113 Rubredoxin binding C-terminal domain HER31_RS10170 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HER31_RS10170 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HER31_RS10180 PF05922 Peptidase inhibitor I9 HER31_RS10180 PF13860 FlgD Ig-like domain HER31_RS10180 PF00082 Subtilase family HER31_RS10180 PF02225 PA domain HER31_RS10200 PF01264 Chorismate synthase HER31_RS10205 PF05175 Methyltransferase small domain HER31_RS10210 PF01713 Smr domain HER31_RS10215 PF00300 Histidine phosphatase superfamily (branch 1) HER31_RS10220 PF00675 Insulinase (Peptidase family M16) HER31_RS10220 PF16187 Middle or third domain of peptidase_M16 HER31_RS10220 PF05193 Peptidase M16 inactive domain HER31_RS10225 PF03707 Bacterial signalling protein N terminal repeat HER31_RS10225 PF00563 EAL domain HER31_RS10225 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS10230 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HER31_RS10230 PF00378 Enoyl-CoA hydratase/isomerase HER31_RS10230 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HER31_RS10235 PF00108 Thiolase, N-terminal domain HER31_RS10235 PF02803 Thiolase, C-terminal domain HER31_RS10245 PF17863 AAA lid domain HER31_RS10245 PF07726 ATPase family associated with various cellular activities (AAA) HER31_RS10250 PF01882 Protein of unknown function DUF58 HER31_RS10265 PF13519 von Willebrand factor type A domain HER31_RS10275 PF04542 Sigma-70 region 2 HER31_RS10275 PF08281 Sigma-70, region 4 HER31_RS10305 PF00474 Sodium:solute symporter family HER31_RS10310 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HER31_RS10315 PF00581 Rhodanese-like domain HER31_RS10320 PF01734 Patatin-like phospholipase HER31_RS10325 PF00916 Sulfate permease family HER31_RS10325 PF01740 STAS domain HER31_RS10345 PF03880 DbpA RNA binding domain HER31_RS10345 PF00270 DEAD/DEAH box helicase HER31_RS10345 PF00271 Helicase conserved C-terminal domain HER31_RS10355 PF00460 Flagella basal body rod protein HER31_RS10355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HER31_RS10360 PF10135 Rod binding protein HER31_RS10360 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HER31_RS10365 PF02119 Flagellar P-ring protein HER31_RS10370 PF02107 Flagellar L-ring protein HER31_RS10375 PF00460 Flagella basal body rod protein HER31_RS10375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HER31_RS10380 PF00460 Flagella basal body rod protein HER31_RS10380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HER31_RS10385 PF00460 Flagella basal body rod protein HER31_RS10385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HER31_RS10385 PF07559 Flagellar basal body protein FlaE HER31_RS10390 PF03963 Flagellar hook capping protein - N-terminal region HER31_RS10395 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HER31_RS10395 PF00460 Flagella basal body rod protein HER31_RS10400 PF00460 Flagella basal body rod protein HER31_RS10405 PF01739 CheR methyltransferase, SAM binding domain HER31_RS10405 PF03705 CheR methyltransferase, all-alpha domain HER31_RS10410 PF01584 CheW-like domain HER31_RS10410 PF00072 Response regulator receiver domain HER31_RS10480 PF00145 C-5 cytosine-specific DNA methylase HER31_RS10490 PF07729 FCD domain HER31_RS10490 PF00392 Bacterial regulatory proteins, gntR family HER31_RS10495 PF00890 FAD binding domain HER31_RS10495 PF14537 Cytochrome c3 HER31_RS10520 PF03466 LysR substrate binding domain HER31_RS10520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS10530 PF00581 Rhodanese-like domain HER31_RS10535 PF07715 TonB-dependent Receptor Plug Domain HER31_RS10535 PF00593 TonB dependent receptor HER31_RS10550 PF00248 Aldo/keto reductase family HER31_RS10570 PF08000 Bacterial PH domain HER31_RS10585 PF03150 Di-haem cytochrome c peroxidase HER31_RS10585 PF00034 Cytochrome c HER31_RS10590 PF02770 Acyl-CoA dehydrogenase, middle domain HER31_RS10590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HER31_RS10590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HER31_RS10595 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HER31_RS10595 PF00378 Enoyl-CoA hydratase/isomerase HER31_RS10595 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HER31_RS10600 PF02803 Thiolase, C-terminal domain HER31_RS10600 PF00108 Thiolase, N-terminal domain HER31_RS10605 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HER31_RS10605 PF12833 Helix-turn-helix domain HER31_RS10610 PF02515 CoA-transferase family III HER31_RS10635 PF00300 Histidine phosphatase superfamily (branch 1) HER31_RS10635 PF00293 NUDIX domain HER31_RS10640 PF00501 AMP-binding enzyme HER31_RS10640 PF13193 AMP-binding enzyme C-terminal domain HER31_RS10645 PF00593 TonB dependent receptor HER31_RS10645 PF07715 TonB-dependent Receptor Plug Domain HER31_RS10650 PF12558 ATP-binding cassette cobalt transporter HER31_RS10650 PF00005 ABC transporter HER31_RS10675 PF04539 Sigma-70 region 3 HER31_RS10675 PF04545 Sigma-70, region 4 HER31_RS10675 PF04542 Sigma-70 region 2 HER31_RS10675 PF00140 Sigma-70 factor, region 1.2 HER31_RS10685 PF01965 DJ-1/PfpI family HER31_RS10695 PF01212 Beta-eliminating lyase HER31_RS10700 PF00924 Mechanosensitive ion channel HER31_RS10700 PF05552 Conserved TM helix HER31_RS10705 PF01370 NAD dependent epimerase/dehydratase family HER31_RS10725 PF00953 Glycosyl transferase family 4 HER31_RS10730 PF01527 Transposase HER31_RS10735 PF00872 Transposase, Mutator family HER31_RS10745 PF03808 Glycosyl transferase WecB/TagA/CpsF family HER31_RS10765 PF00842 Alanine racemase, C-terminal domain HER31_RS10765 PF01168 Alanine racemase, N-terminal domain HER31_RS10780 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HER31_RS10780 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HER31_RS10780 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HER31_RS10785 PF02350 UDP-N-acetylglucosamine 2-epimerase HER31_RS10790 PF02350 UDP-N-acetylglucosamine 2-epimerase HER31_RS10795 PF08666 SAF domain HER31_RS10795 PF03102 NeuB family HER31_RS10800 PF02348 Cytidylyltransferase HER31_RS10800 PF13472 GDSL-like Lipase/Acylhydrolase family HER31_RS10810 PF10531 SLBB domain HER31_RS10810 PF02563 Polysaccharide biosynthesis/export protein HER31_RS10815 PF00854 POT family HER31_RS10825 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HER31_RS10830 PF01797 Transposase IS200 like HER31_RS10835 PF02574 Homocysteine S-methyltransferase HER31_RS10835 PF02965 Vitamin B12 dependent methionine synthase, activation domain HER31_RS10835 PF02607 B12 binding domain HER31_RS10835 PF02310 B12 binding domain HER31_RS10835 PF00809 Pterin binding enzyme HER31_RS10845 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HER31_RS10845 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HER31_RS10845 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HER31_RS10855 PF01584 CheW-like domain HER31_RS10865 PF13614 AAA domain HER31_RS10875 PF01339 CheB methylesterase HER31_RS10875 PF00072 Response regulator receiver domain HER31_RS10880 PF02895 Signal transducing histidine kinase, homodimeric domain HER31_RS10880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS10880 PF01584 CheW-like domain HER31_RS10880 PF00072 Response regulator receiver domain HER31_RS10880 PF01627 Hpt domain HER31_RS10885 PF04344 Chemotaxis phosphatase, CheZ HER31_RS10890 PF00072 Response regulator receiver domain HER31_RS10895 PF04545 Sigma-70, region 4 HER31_RS10895 PF04539 Sigma-70 region 3 HER31_RS10895 PF04542 Sigma-70 region 2 HER31_RS10900 PF10609 NUBPL iron-transfer P-loop NTPase HER31_RS10905 PF00448 SRP54-type protein, GTPase domain HER31_RS10910 PF00771 FHIPEP family HER31_RS10915 PF01312 FlhB HrpN YscU SpaS Family HER31_RS10920 PF01311 Bacterial export proteins, family 1 HER31_RS10925 PF01313 Bacterial export proteins, family 3 HER31_RS10930 PF00813 FliP family HER31_RS10935 PF04347 Flagellar biosynthesis protein, FliO HER31_RS10940 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HER31_RS10945 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HER31_RS10945 PF02154 Flagellar motor switch protein FliM HER31_RS10965 PF18269 T3SS EscN ATPase C-terminal domain HER31_RS10965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HER31_RS10975 PF14842 FliG N-terminal domain HER31_RS10975 PF01706 FliG C-terminal domain HER31_RS10975 PF14841 FliG middle domain HER31_RS10980 PF01514 Secretory protein of YscJ/FliF family HER31_RS10980 PF08345 Flagellar M-ring protein C-terminal HER31_RS10985 PF02049 Flagellar hook-basal body complex protein FliE HER31_RS10990 PF02954 Bacterial regulatory protein, Fis family HER31_RS10990 PF00072 Response regulator receiver domain HER31_RS10990 PF00158 Sigma-54 interaction domain HER31_RS10995 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS10995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS11000 PF02954 Bacterial regulatory protein, Fis family HER31_RS11000 PF00158 Sigma-54 interaction domain HER31_RS11000 PF06490 Flagellar regulatory protein FleQ HER31_RS11005 PF02561 Flagellar protein FliS HER31_RS11015 PF02465 Flagellar hook-associated protein 2 N-terminus HER31_RS11015 PF07195 Flagellar hook-associated protein 2 C-terminus HER31_RS11015 PF07196 Flagellin hook IN motif HER31_RS11025 PF00700 Bacterial flagellin C-terminal helical region HER31_RS11025 PF07196 Flagellin hook IN motif HER31_RS11025 PF00669 Bacterial flagellin N-terminal helical region HER31_RS11030 PF00265 Thymidine kinase HER31_RS11035 PF03553 Na+/H+ antiporter family HER31_RS11045 PF00766 Electron transfer flavoprotein FAD-binding domain HER31_RS11045 PF01012 Electron transfer flavoprotein domain HER31_RS11050 PF01012 Electron transfer flavoprotein domain HER31_RS11055 PF00816 H-NS histone family HER31_RS11060 PF01979 Amidohydrolase family HER31_RS11075 PF01980 tRNA-methyltransferase O HER31_RS11075 PF18389 TrmO C-terminal domain HER31_RS11080 PF00132 Bacterial transferase hexapeptide (six repeats) HER31_RS11080 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HER31_RS11085 PF04073 Aminoacyl-tRNA editing domain HER31_RS11085 PF03129 Anticodon binding domain HER31_RS11085 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HER31_RS11095 PF00999 Sodium/hydrogen exchanger family HER31_RS11095 PF02254 TrkA-N domain HER31_RS11095 PF02080 TrkA-C domain HER31_RS11100 PF09179 TilS substrate binding domain HER31_RS11100 PF01171 PP-loop family HER31_RS11100 PF11734 TilS substrate C-terminal domain HER31_RS11105 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HER31_RS11110 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HER31_RS11110 PF01336 OB-fold nucleic acid binding domain HER31_RS11110 PF02811 PHP domain HER31_RS11110 PF14579 Helix-hairpin-helix motif HER31_RS11110 PF07733 Bacterial DNA polymerase III alpha NTPase domain HER31_RS11115 PF01351 Ribonuclease HII HER31_RS11120 PF02684 Lipid-A-disaccharide synthetase HER31_RS11125 PF00132 Bacterial transferase hexapeptide (six repeats) HER31_RS11125 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HER31_RS11130 PF07977 FabA-like domain HER31_RS11135 PF14602 Hexapeptide repeat of succinyl-transferase HER31_RS11135 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HER31_RS11135 PF00132 Bacterial transferase hexapeptide (six repeats) HER31_RS11145 PF01103 Surface antigen HER31_RS11145 PF07244 Surface antigen variable number repeat HER31_RS11150 PF02163 Peptidase family M50 HER31_RS11150 PF17820 PDZ domain HER31_RS11155 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HER31_RS11155 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HER31_RS11155 PF13288 DXP reductoisomerase C-terminal domain HER31_RS11165 PF01255 Putative undecaprenyl diphosphate synthase HER31_RS11170 PF01765 Ribosome recycling factor HER31_RS11175 PF00696 Amino acid kinase family HER31_RS11180 PF00889 Elongation factor TS HER31_RS11185 PF00318 Ribosomal protein S2 HER31_RS11190 PF00557 Metallopeptidase family M24 HER31_RS11195 PF08335 GlnD PII-uridylyltransferase HER31_RS11195 PF01966 HD domain HER31_RS11195 PF01909 Nucleotidyltransferase domain HER31_RS11195 PF01842 ACT domain HER31_RS11200 PF00132 Bacterial transferase hexapeptide (six repeats) HER31_RS11200 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HER31_RS11200 PF14602 Hexapeptide repeat of succinyl-transferase HER31_RS11205 PF02770 Acyl-CoA dehydrogenase, middle domain HER31_RS11205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HER31_RS11205 PF12806 Acetyl-CoA dehydrogenase C-terminal like HER31_RS11205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HER31_RS11210 PF00367 phosphotransferase system, EIIB HER31_RS11210 PF02378 Phosphotransferase system, EIIC HER31_RS11215 PF00258 Flavodoxin HER31_RS11220 PF00849 RNA pseudouridylate synthase HER31_RS11250 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HER31_RS11255 PF00171 Aldehyde dehydrogenase family HER31_RS11260 PF07348 Syd protein (SUKH-2) HER31_RS11265 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HER31_RS11265 PF14489 QueF-like protein HER31_RS11280 PF00037 4Fe-4S binding domain HER31_RS11290 PF01136 Peptidase family U32 HER31_RS11295 PF01136 Peptidase family U32 HER31_RS11305 PF00171 Aldehyde dehydrogenase family HER31_RS11310 PF00696 Amino acid kinase family HER31_RS11310 PF01472 PUA domain HER31_RS11315 PF00860 Permease family HER31_RS11320 PF00883 Cytosol aminopeptidase family, catalytic domain HER31_RS11320 PF02789 Cytosol aminopeptidase family, N-terminal domain HER31_RS11325 PF01546 Peptidase family M20/M25/M40 HER31_RS11325 PF07687 Peptidase dimerisation domain HER31_RS11330 PF05661 Protein of unknown function (DUF808) HER31_RS11345 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HER31_RS11345 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HER31_RS11350 PF00378 Enoyl-CoA hydratase/isomerase HER31_RS11355 PF02770 Acyl-CoA dehydrogenase, middle domain HER31_RS11355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HER31_RS11355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HER31_RS11360 PF00171 Aldehyde dehydrogenase family HER31_RS11365 PF00108 Thiolase, N-terminal domain HER31_RS11365 PF02803 Thiolase, C-terminal domain HER31_RS11370 PF04204 Homoserine O-succinyltransferase HER31_RS11390 PF00970 Oxidoreductase FAD-binding domain HER31_RS11390 PF00175 Oxidoreductase NAD-binding domain HER31_RS11395 PF00375 Sodium:dicarboxylate symporter family HER31_RS11405 PF02253 Phospholipase A1 HER31_RS11415 PF00152 tRNA synthetases class II (D, K and N) HER31_RS11425 PF03553 Na+/H+ antiporter family HER31_RS11430 PF01368 DHH family HER31_RS11430 PF02272 DHHA1 domain HER31_RS11430 PF17768 RecJ OB domain HER31_RS11460 PF07396 Phosphate-selective porin O and P HER31_RS11475 PF01384 Phosphate transporter family HER31_RS11480 PF13098 Thioredoxin-like domain HER31_RS11480 PF10411 Disulfide bond isomerase protein N-terminus HER31_RS11485 PF02899 Phage integrase, N-terminal SAM-like domain HER31_RS11485 PF00589 Phage integrase family HER31_RS11490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HER31_RS11495 PF00873 AcrB/AcrD/AcrF family HER31_RS11505 PF00155 Aminotransferase class I and II HER31_RS11510 PF05525 Branched-chain amino acid transport protein HER31_RS11515 PF05175 Methyltransferase small domain HER31_RS11520 PF00271 Helicase conserved C-terminal domain HER31_RS11520 PF00270 DEAD/DEAH box helicase HER31_RS11535 PF01116 Fructose-bisphosphate aldolase class-II HER31_RS11540 PF00162 Phosphoglycerate kinase HER31_RS11545 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HER31_RS11545 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HER31_RS11550 PF00849 RNA pseudouridylate synthase HER31_RS11550 PF01479 S4 domain HER31_RS11560 PF01810 LysE type translocator HER31_RS11565 PF02357 Transcription termination factor nusG HER31_RS11570 PF00551 Formyl transferase HER31_RS11570 PF01842 ACT domain HER31_RS11580 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS11580 PF10518 TAT (twin-arginine translocation) pathway signal sequence HER31_RS11580 PF00384 Molybdopterin oxidoreductase HER31_RS11580 PF01568 Molydopterin dinucleotide binding domain HER31_RS11585 PF03927 NapD protein HER31_RS11590 PF00271 Helicase conserved C-terminal domain HER31_RS11590 PF00270 DEAD/DEAH box helicase HER31_RS11605 PF17425 Arylsulfotransferase Ig-like domain HER31_RS11605 PF05935 Arylsulfotransferase (ASST) HER31_RS11615 PF01323 DSBA-like thioredoxin domain HER31_RS11620 PF02600 Disulfide bond formation protein DsbB HER31_RS11680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HER31_RS11680 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HER31_RS11685 PF08450 SMP-30/Gluconolactonase/LRE-like region HER31_RS11690 PF01263 Aldose 1-epimerase HER31_RS11695 PF03328 HpcH/HpaI aldolase/citrate lyase family HER31_RS11700 PF00920 Dehydratase family HER31_RS11705 PF00474 Sodium:solute symporter family HER31_RS11715 PF01648 4'-phosphopantetheinyl transferase superfamily HER31_RS11720 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HER31_RS11725 PF11967 Recombination protein O N terminal HER31_RS11725 PF02565 Recombination protein O C terminal HER31_RS11730 PF07650 KH domain HER31_RS11730 PF01926 50S ribosome-binding GTPase HER31_RS11735 PF14622 Ribonuclease-III-like HER31_RS11735 PF00035 Double-stranded RNA binding motif HER31_RS11740 PF10502 Signal peptidase, peptidase S26 HER31_RS11745 PF03144 Elongation factor Tu domain 2 HER31_RS11745 PF00679 Elongation factor G C-terminus HER31_RS11745 PF00009 Elongation factor Tu GTP binding domain HER31_RS11745 PF06421 GTP-binding protein LepA C-terminus HER31_RS11755 PF03888 MucB/RseB N-terminal domain HER31_RS11755 PF17188 MucB/RseB C-terminal domain HER31_RS11765 PF04542 Sigma-70 region 2 HER31_RS11765 PF08281 Sigma-70, region 4 HER31_RS11770 PF00890 FAD binding domain HER31_RS11770 PF02910 Fumarate reductase flavoprotein C-term HER31_RS11775 PF03937 Flavinator of succinate dehydrogenase HER31_RS11780 PF07690 Major Facilitator Superfamily HER31_RS11785 PF03466 LysR substrate binding domain HER31_RS11785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS11790 PF06965 Na+/H+ antiporter 1 HER31_RS11795 PF00375 Sodium:dicarboxylate symporter family HER31_RS11800 PF00303 Thymidylate synthase HER31_RS11805 PF01790 Prolipoprotein diacylglyceryl transferase HER31_RS11810 PF00391 PEP-utilising enzyme, mobile domain HER31_RS11810 PF02896 PEP-utilising enzyme, TIM barrel domain HER31_RS11810 PF01590 GAF domain HER31_RS11810 PF05524 PEP-utilising enzyme, N-terminal HER31_RS11815 PF00293 NUDIX domain HER31_RS11820 PF02976 DNA mismatch repair enzyme MutH HER31_RS11825 PF00211 Adenylate and Guanylate cyclase catalytic domain HER31_RS11830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS11830 PF03466 LysR substrate binding domain HER31_RS11840 PF00072 Response regulator receiver domain HER31_RS11840 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS11860 PF08331 Domain of unknown function (DUF1730) HER31_RS11885 PF13247 4Fe-4S dicluster domain HER31_RS11885 PF00037 4Fe-4S binding domain HER31_RS11890 PF03916 Polysulphide reductase, NrfD HER31_RS11895 PF14537 Cytochrome c3 HER31_RS11905 PF03167 Uracil DNA glycosylase superfamily HER31_RS11910 PF01261 Xylose isomerase-like TIM barrel HER31_RS11915 PF08212 Lipocalin-like domain HER31_RS11935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HER31_RS11950 PF04320 Protein with unknown function (DUF469) HER31_RS11995 PF00589 Phage integrase family HER31_RS11995 PF13495 Phage integrase, N-terminal SAM-like domain HER31_RS12000 PF14821 Threonine synthase N terminus HER31_RS12000 PF00291 Pyridoxal-phosphate dependent enzyme HER31_RS12005 PF00288 GHMP kinases N terminal domain HER31_RS12005 PF08544 GHMP kinases C terminal HER31_RS12010 PF00696 Amino acid kinase family HER31_RS12010 PF03447 Homoserine dehydrogenase, NAD binding domain HER31_RS12010 PF00742 Homoserine dehydrogenase HER31_RS12010 PF01842 ACT domain HER31_RS12010 PF13840 ACT domain HER31_RS12015 PF00588 SpoU rRNA Methylase family HER31_RS12020 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) HER31_RS12025 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HER31_RS12065 PF01022 Bacterial regulatory protein, arsR family HER31_RS12070 PF13614 AAA domain HER31_RS12080 PF04608 Phosphatidylglycerophosphatase A HER31_RS12085 PF00586 AIR synthase related protein, N-terminal domain HER31_RS12085 PF02769 AIR synthase related protein, C-terminal domain HER31_RS12090 PF01029 NusB family HER31_RS12095 PF00885 6,7-dimethyl-8-ribityllumazine synthase HER31_RS12100 PF00925 GTP cyclohydrolase II HER31_RS12100 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HER31_RS12105 PF00677 Lumazine binding domain HER31_RS12110 PF01872 RibD C-terminal domain HER31_RS12110 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HER31_RS12115 PF03477 ATP cone domain HER31_RS12120 PF00464 Serine hydroxymethyltransferase HER31_RS12125 PF00206 Lyase HER31_RS12125 PF10397 Adenylosuccinate lyase C-terminus HER31_RS12130 PF00890 FAD binding domain HER31_RS12130 PF14537 Cytochrome c3 HER31_RS12135 PF00267 Gram-negative porin HER31_RS12140 PF03466 LysR substrate binding domain HER31_RS12140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS12145 PF00005 ABC transporter HER31_RS12145 PF12848 ABC transporter HER31_RS12165 PF07295 Zinc-ribbon containing domain HER31_RS12170 PF00133 tRNA synthetases class I (I, L, M and V) HER31_RS12170 PF13603 Leucyl-tRNA synthetase, Domain 2 HER31_RS12170 PF08264 Anticodon-binding domain of tRNA HER31_RS12175 PF04390 Lipopolysaccharide-assembly HER31_RS12185 PF01467 Cytidylyltransferase-like HER31_RS12195 PF02590 Predicted SPOUT methyltransferase HER31_RS12200 PF03717 Penicillin-binding Protein dimerisation domain HER31_RS12200 PF00905 Penicillin binding protein transpeptidase domain HER31_RS12205 PF01098 Cell cycle protein HER31_RS12210 PF13406 Transglycosylase SLT domain HER31_RS12215 PF05036 Sporulation related domain HER31_RS12215 PF03330 Lytic transglycolase HER31_RS12220 PF07943 Penicillin-binding protein 5, C-terminal domain HER31_RS12220 PF00768 D-alanyl-D-alanine carboxypeptidase HER31_RS12225 PF04359 Protein of unknown function (DUF493) HER31_RS12230 PF03099 Biotin/lipoate A/B protein ligase family HER31_RS12235 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HER31_RS12235 PF04055 Radical SAM superfamily HER31_RS12240 PF00583 Acetyltransferase (GNAT) family HER31_RS12255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS12255 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS12255 PF00672 HAMP domain HER31_RS12255 PF18698 Histidine kinase sensor domain HER31_RS12260 PF00486 Transcriptional regulatory protein, C terminal HER31_RS12260 PF00072 Response regulator receiver domain HER31_RS12285 PF01590 GAF domain HER31_RS12285 PF00158 Sigma-54 interaction domain HER31_RS12300 PF04205 FMN-binding domain HER31_RS12300 PF00890 FAD binding domain HER31_RS12310 PF03916 Polysulphide reductase, NrfD HER31_RS12315 PF13247 4Fe-4S dicluster domain HER31_RS12320 PF01568 Molydopterin dinucleotide binding domain HER31_RS12320 PF00384 Molybdopterin oxidoreductase HER31_RS12320 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS12325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS12325 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS12330 PF00072 Response regulator receiver domain HER31_RS12330 PF00196 Bacterial regulatory proteins, luxR family HER31_RS12340 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER31_RS12340 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HER31_RS12345 PF03466 LysR substrate binding domain HER31_RS12345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS12355 PF06738 Putative threonine/serine exporter HER31_RS12360 PF12821 Threonine/Serine exporter, ThrE HER31_RS12365 PF00579 tRNA synthetases class I (W and Y) HER31_RS12370 PF01551 Peptidase family M23 HER31_RS12370 PF08525 Opacity-associated protein A N-terminal motif HER31_RS12370 PF01476 LysM domain HER31_RS12375 PF03702 Anhydro-N-acetylmuramic acid kinase HER31_RS12390 PF00939 Sodium:sulfate symporter transmembrane region HER31_RS12395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS12395 PF03466 LysR substrate binding domain HER31_RS12400 PF14537 Cytochrome c3 HER31_RS12400 PF00890 FAD binding domain HER31_RS12410 PF00465 Iron-containing alcohol dehydrogenase HER31_RS12425 PF14245 Type IV pilin PilA HER31_RS12425 PF07963 Prokaryotic N-terminal methylation motif HER31_RS12430 PF00107 Zinc-binding dehydrogenase HER31_RS12430 PF08240 Alcohol dehydrogenase GroES-like domain HER31_RS12435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS12435 PF03466 LysR substrate binding domain HER31_RS12465 PF00199 Catalase HER31_RS12465 PF06628 Catalase-related immune-responsive HER31_RS12480 PF03707 Bacterial signalling protein N terminal repeat HER31_RS12480 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS12480 PF00563 EAL domain HER31_RS12490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS12490 PF03466 LysR substrate binding domain HER31_RS12495 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HER31_RS12495 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HER31_RS12500 PF07005 Sugar-binding N-terminal domain HER31_RS12500 PF17042 Nucleotide-binding C-terminal domain HER31_RS12505 PF00596 Class II Aldolase and Adducin N-terminal domain HER31_RS12510 PF01261 Xylose isomerase-like TIM barrel HER31_RS12515 PF02447 GntP family permease HER31_RS12540 PF05935 Arylsulfotransferase (ASST) HER31_RS12540 PF17425 Arylsulfotransferase Ig-like domain HER31_RS12545 PF17932 Tetracyclin repressor-like, C-terminal domain HER31_RS12545 PF00440 Bacterial regulatory proteins, tetR family HER31_RS12560 PF00881 Nitroreductase family HER31_RS12585 PF17425 Arylsulfotransferase Ig-like domain HER31_RS12585 PF05935 Arylsulfotransferase (ASST) HER31_RS12590 PF02600 Disulfide bond formation protein DsbB HER31_RS12595 PF01323 DSBA-like thioredoxin domain HER31_RS12600 PF03466 LysR substrate binding domain HER31_RS12600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS12610 PF02347 Glycine cleavage system P-protein HER31_RS12615 PF01597 Glycine cleavage H-protein HER31_RS12620 PF08669 Glycine cleavage T-protein C-terminal barrel domain HER31_RS12620 PF01571 Aminomethyltransferase folate-binding domain HER31_RS12625 PF01494 FAD binding domain HER31_RS12630 PF01494 FAD binding domain HER31_RS12635 PF05195 Aminopeptidase P, N-terminal domain HER31_RS12635 PF00557 Metallopeptidase family M24 HER31_RS12640 PF03695 Uncharacterised protein family (UPF0149) HER31_RS12655 PF00563 EAL domain HER31_RS12655 PF03707 Bacterial signalling protein N terminal repeat HER31_RS12655 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS12660 PF06803 Protein of unknown function (DUF1232) HER31_RS12665 PF01812 5-formyltetrahydrofolate cyclo-ligase family HER31_RS12675 PF06288 Protein of unknown function (DUF1040) HER31_RS12680 PF00905 Penicillin binding protein transpeptidase domain HER31_RS12680 PF00912 Transglycosylase HER31_RS12680 PF14814 Bifunctional transglycosylase second domain HER31_RS12685 PF00270 DEAD/DEAH box helicase HER31_RS12685 PF04408 Helicase associated domain (HA2) HER31_RS12685 PF00271 Helicase conserved C-terminal domain HER31_RS12685 PF08482 ATP-dependent helicase C-terminal HER31_RS12700 PF00883 Cytosol aminopeptidase family, catalytic domain HER31_RS12700 PF12404 Peptidase HER31_RS12705 PF03749 Sugar fermentation stimulation protein RE domain HER31_RS12705 PF17746 SfsA N-terminal OB domain HER31_RS12710 PF01258 Prokaryotic dksA/traR C4-type zinc finger HER31_RS12715 PF00749 tRNA synthetases class I (E and Q), catalytic domain HER31_RS12720 PF12627 Probable RNA and SrmB- binding site of polymerase A HER31_RS12720 PF12626 Polymerase A arginine-rich C-terminus HER31_RS12720 PF01743 Poly A polymerase head domain HER31_RS12725 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HER31_RS12730 PF02548 Ketopantoate hydroxymethyltransferase HER31_RS12735 PF02569 Pantoate-beta-alanine ligase HER31_RS12740 PF02261 Aspartate decarboxylase HER31_RS12745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS12745 PF00672 HAMP domain HER31_RS12745 PF00072 Response regulator receiver domain HER31_RS12745 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HER31_RS12745 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS12745 PF01627 Hpt domain HER31_RS12755 PF13581 Histidine kinase-like ATPase domain HER31_RS12760 PF01740 STAS domain HER31_RS12760 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain HER31_RS12765 PF08678 Rsbr N terminal HER31_RS12765 PF01740 STAS domain HER31_RS12775 PF13302 Acetyltransferase (GNAT) domain HER31_RS12775 PF00958 GMP synthase C terminal domain HER31_RS12775 PF03352 Methyladenine glycosylase HER31_RS12775 PF00117 Glutamine amidotransferase class-I HER31_RS12775 PF13673 Acetyltransferase (GNAT) domain HER31_RS12790 PF00005 ABC transporter HER31_RS12790 PF12848 ABC transporter HER31_RS12815 PF16124 RecQ zinc-binding HER31_RS12815 PF09382 RQC domain HER31_RS12815 PF00271 Helicase conserved C-terminal domain HER31_RS12815 PF00570 HRDC domain HER31_RS12815 PF00270 DEAD/DEAH box helicase HER31_RS12820 PF07308 Protein of unknown function (DUF1456) HER31_RS12825 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS12825 PF00384 Molybdopterin oxidoreductase HER31_RS12825 PF04324 BFD-like [2Fe-2S] binding domain HER31_RS12825 PF01568 Molydopterin dinucleotide binding domain HER31_RS12830 PF10414 Sirohaem synthase dimerisation region HER31_RS12830 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HER31_RS12830 PF14824 Sirohaem biosynthesis protein central HER31_RS12835 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HER31_RS12835 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HER31_RS12835 PF04324 BFD-like [2Fe-2S] binding domain HER31_RS12835 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER31_RS12835 PF13806 Rieske-like [2Fe-2S] domain HER31_RS12835 PF18267 Rubredoxin NAD+ reductase C-terminal domain HER31_RS12840 PF13806 Rieske-like [2Fe-2S] domain HER31_RS12845 PF00497 Bacterial extracellular solute-binding proteins, family 3 HER31_RS12850 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS12855 PF00005 ABC transporter HER31_RS12880 PF17862 AAA+ lid domain HER31_RS12880 PF01434 Peptidase family M41 HER31_RS12880 PF00004 ATPase family associated with various cellular activities (AAA) HER31_RS12880 PF06480 FtsH Extracellular HER31_RS12890 PF00072 Response regulator receiver domain HER31_RS12890 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS12920 PF14537 Cytochrome c3 HER31_RS12920 PF00890 FAD binding domain HER31_RS12945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS12945 PF08447 PAS fold HER31_RS12945 PF08448 PAS fold HER31_RS12950 PF02954 Bacterial regulatory protein, Fis family HER31_RS12950 PF00072 Response regulator receiver domain HER31_RS12950 PF00158 Sigma-54 interaction domain HER31_RS12965 PF01156 Inosine-uridine preferring nucleoside hydrolase HER31_RS12990 PF01863 Protein of unknown function DUF45 HER31_RS12995 PF00596 Class II Aldolase and Adducin N-terminal domain HER31_RS13000 PF01758 Sodium Bile acid symporter family HER31_RS13005 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HER31_RS13015 PF01810 LysE type translocator HER31_RS13035 PF01467 Cytidylyltransferase-like HER31_RS13035 PF00294 pfkB family carbohydrate kinase HER31_RS13040 PF03279 Bacterial lipid A biosynthesis acyltransferase HER31_RS13045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS13045 PF03466 LysR substrate binding domain HER31_RS13050 PF07690 Major Facilitator Superfamily HER31_RS13055 PF08335 GlnD PII-uridylyltransferase HER31_RS13055 PF03710 Glutamate-ammonia ligase adenylyltransferase HER31_RS13065 PF07885 Ion channel HER31_RS13070 PF01928 CYTH domain HER31_RS13075 PF01865 Protein of unknown function DUF47 HER31_RS13080 PF01384 Phosphate transporter family HER31_RS13090 PF00171 Aldehyde dehydrogenase family HER31_RS13090 PF01619 Proline dehydrogenase HER31_RS13090 PF14850 DNA-binding domain of Proline dehydrogenase HER31_RS13090 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HER31_RS13100 PF01471 Putative peptidoglycan binding domain HER31_RS13100 PF13401 AAA domain HER31_RS13105 PF01966 HD domain HER31_RS13105 PF12627 Probable RNA and SrmB- binding site of polymerase A HER31_RS13105 PF01743 Poly A polymerase head domain HER31_RS13110 PF02673 Bacitracin resistance protein BacA HER31_RS13115 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HER31_RS13120 PF02152 Dihydroneopterin aldolase HER31_RS13125 PF02660 Glycerol-3-phosphate acyltransferase HER31_RS13130 PF00814 Glycoprotease family HER31_RS13135 PF01165 Ribosomal protein S21 HER31_RS13145 PF01807 CHC2 zinc finger HER31_RS13145 PF08275 DNA primase catalytic core, N-terminal domain HER31_RS13145 PF10410 DnaB-helicase binding domain of primase HER31_RS13145 PF08278 DNA primase DnaG DnaB-binding HER31_RS13150 PF04546 Sigma-70, non-essential region HER31_RS13150 PF04545 Sigma-70, region 4 HER31_RS13150 PF04539 Sigma-70 region 3 HER31_RS13150 PF03979 Sigma-70 factor, region 1.1 HER31_RS13150 PF00140 Sigma-70 factor, region 1.2 HER31_RS13150 PF04542 Sigma-70 region 2 HER31_RS13155 PF00378 Enoyl-CoA hydratase/isomerase HER31_RS13160 PF00072 Response regulator receiver domain HER31_RS13160 PF00486 Transcriptional regulatory protein, C terminal HER31_RS13165 PF05230 MASE2 domain HER31_RS13165 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS13185 PF06877 Regulator of ribonuclease activity B HER31_RS13190 PF01553 Acyltransferase HER31_RS13195 PF00302 Chloramphenicol acetyltransferase HER31_RS13200 PF03989 DNA gyrase C-terminal domain, beta-propeller HER31_RS13200 PF00521 DNA gyrase/topoisomerase IV, subunit A HER31_RS13205 PF07995 Glucose / Sorbosone dehydrogenase HER31_RS13210 PF00204 DNA gyrase B HER31_RS13210 PF01751 Toprim domain HER31_RS13210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS13210 PF00986 DNA gyrase B subunit, carboxyl terminus HER31_RS13215 PF05728 Uncharacterised protein family (UPF0227) HER31_RS13220 PF00149 Calcineurin-like phosphoesterase HER31_RS13225 PF06853 Protein of unknown function (DUF1249) HER31_RS13230 PF00293 NUDIX domain HER31_RS13235 PF02321 Outer membrane efflux protein HER31_RS13255 PF00378 Enoyl-CoA hydratase/isomerase HER31_RS13275 PF01207 Dihydrouridine synthase (Dus) HER31_RS13280 PF00501 AMP-binding enzyme HER31_RS13285 PF01259 SAICAR synthetase HER31_RS13300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HER31_RS13300 PF00005 ABC transporter HER31_RS13305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HER31_RS13305 PF00005 ABC transporter HER31_RS13310 PF12911 N-terminal TM domain of oligopeptide transport permease C HER31_RS13310 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS13315 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS13320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HER31_RS13325 PF01894 Uncharacterised protein family UPF0047 HER31_RS13330 PF01168 Alanine racemase, N-terminal domain HER31_RS13330 PF00842 Alanine racemase, C-terminal domain HER31_RS13335 PF03796 DnaB-like helicase C terminal domain HER31_RS13335 PF00772 DnaB-like helicase N terminal domain HER31_RS13360 PF01048 Phosphorylase superfamily HER31_RS13370 PF00529 HlyD membrane-fusion protein of T1SS HER31_RS13370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HER31_RS13375 PF11742 Protein of unknown function (DUF3302) HER31_RS13380 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS13380 PF00563 EAL domain HER31_RS13380 PF00498 FHA domain HER31_RS13385 PF03313 Serine dehydratase alpha chain HER31_RS13385 PF03315 Serine dehydratase beta chain HER31_RS13390 PF03222 Tryptophan/tyrosine permease family HER31_RS13395 PF01925 Sulfite exporter TauE/SafE HER31_RS13400 PF01931 Protein of unknown function DUF84 HER31_RS13405 PF01804 Penicillin amidase HER31_RS13410 PF00266 Aminotransferase class-V HER31_RS13415 PF02657 Fe-S metabolism associated domain HER31_RS13420 PF00899 ThiF family HER31_RS13430 PF00069 Protein kinase domain HER31_RS13435 PF04304 Protein of unknown function (DUF454) HER31_RS13440 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HER31_RS13440 PF00072 Response regulator receiver domain HER31_RS13440 PF01627 Hpt domain HER31_RS13440 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS13440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS13440 PF00672 HAMP domain HER31_RS13445 PF02872 5'-nucleotidase, C-terminal domain HER31_RS13445 PF00149 Calcineurin-like phosphoesterase HER31_RS13455 PF02562 PhoH-like protein HER31_RS13455 PF13638 PIN domain HER31_RS13460 PF12137 RNA polymerase recycling family C-terminal HER31_RS13460 PF18337 RapA N-terminal Tudor like domain HER31_RS13460 PF18339 RapA N-terminal Tudor like domain 1 HER31_RS13460 PF00271 Helicase conserved C-terminal domain HER31_RS13460 PF00176 SNF2 family N-terminal domain HER31_RS13465 PF03448 MgtE intracellular N domain HER31_RS13465 PF01769 Divalent cation transporter HER31_RS13465 PF00571 CBS domain HER31_RS13470 PF08206 Ribonuclease B OB domain HER31_RS13470 PF00773 RNB domain HER31_RS13470 PF00575 S1 RNA binding domain HER31_RS13475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HER31_RS13475 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HER31_RS13485 PF00226 DnaJ domain HER31_RS13485 PF05099 Tellurite resistance protein TerB HER31_RS13490 PF00483 Nucleotidyl transferase HER31_RS13495 PF01636 Phosphotransferase enzyme family HER31_RS13500 PF03968 OstA-like protein HER31_RS13500 PF04453 LPS transport system D HER31_RS13505 PF00639 PPIC-type PPIASE domain HER31_RS13505 PF09312 SurA N-terminal domain HER31_RS13510 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HER31_RS13515 PF00398 Ribosomal RNA adenine dimethylase HER31_RS13520 PF04379 ApaG domain HER31_RS13525 PF00149 Calcineurin-like phosphoesterase HER31_RS13530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HER31_RS13530 PF00672 HAMP domain HER31_RS13535 PF00186 Dihydrofolate reductase HER31_RS13545 PF01016 Ribosomal L27 protein HER31_RS13550 PF00829 Ribosomal prokaryotic L21 protein HER31_RS13555 PF00348 Polyprenyl synthetase HER31_RS13560 PF00117 Glutamine amidotransferase class-I HER31_RS13575 PF00202 Aminotransferase class-III HER31_RS13580 PF04958 Arginine N-succinyltransferase beta subunit HER31_RS13585 PF00171 Aldehyde dehydrogenase family HER31_RS13595 PF13545 Crp-like helix-turn-helix domain HER31_RS13595 PF00027 Cyclic nucleotide-binding domain HER31_RS13600 PF00485 Phosphoribulokinase / Uridine kinase family HER31_RS13610 PF00561 alpha/beta hydrolase fold HER31_RS13620 PF05199 GMC oxidoreductase HER31_RS13620 PF00732 GMC oxidoreductase HER31_RS13630 PF12848 ABC transporter HER31_RS13630 PF00005 ABC transporter HER31_RS13635 PF09526 Probable metal-binding protein (DUF2387) HER31_RS13640 PF08139 Prokaryotic membrane lipoprotein lipid attachment site HER31_RS13640 PF13036 Peptidoglycan-synthase activator LpoB HER31_RS13650 PF01327 Polypeptide deformylase HER31_RS13655 PF04102 SlyX HER31_RS13660 PF06062 Uncharacterised protein family (UPF0231) HER31_RS13665 PF00196 Bacterial regulatory proteins, luxR family HER31_RS13665 PF00072 Response regulator receiver domain HER31_RS13670 PF00672 HAMP domain HER31_RS13670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS13670 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HER31_RS13670 PF07730 Histidine kinase HER31_RS13675 PF02335 Cytochrome c552 HER31_RS13680 PF00543 Nitrogen regulatory protein P-II HER31_RS13685 PF00909 Ammonium Transporter Family HER31_RS13690 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HER31_RS13690 PF00056 lactate/malate dehydrogenase, NAD binding domain HER31_RS13695 PF02863 Arginine repressor, C-terminal domain HER31_RS13695 PF01316 Arginine repressor, DNA binding domain HER31_RS13700 PF04261 Dyp-type peroxidase family HER31_RS13705 PF08402 TOBE domain HER31_RS13705 PF00005 ABC transporter HER31_RS13720 PF00766 Electron transfer flavoprotein FAD-binding domain HER31_RS13720 PF01012 Electron transfer flavoprotein domain HER31_RS13725 PF01012 Electron transfer flavoprotein domain HER31_RS13730 PF12833 Helix-turn-helix domain HER31_RS13785 PF01228 Glycine radical HER31_RS13790 PF04386 Stringent starvation protein B HER31_RS13795 PF00043 Glutathione S-transferase, C-terminal domain HER31_RS13795 PF02798 Glutathione S-transferase, N-terminal domain HER31_RS13800 PF02167 Cytochrome C1 family HER31_RS13805 PF00032 Cytochrome b(C-terminal)/b6/petD HER31_RS13805 PF00033 Cytochrome b/b6/petB HER31_RS13810 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HER31_RS13810 PF00355 Rieske [2Fe-2S] domain HER31_RS13815 PF00380 Ribosomal protein S9/S16 HER31_RS13820 PF00572 Ribosomal protein L13 HER31_RS13825 PF03969 AFG1-like ATPase HER31_RS13835 PF00595 PDZ domain HER31_RS13835 PF13180 PDZ domain HER31_RS13840 PF13180 PDZ domain HER31_RS13845 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HER31_RS13850 PF01722 BolA-like protein HER31_RS13860 PF05494 MlaC protein HER31_RS13865 PF02470 MlaD protein HER31_RS13870 PF02405 Permease MlaE HER31_RS13875 PF00005 ABC transporter HER31_RS13880 PF01699 Sodium/calcium exchanger protein HER31_RS13885 PF00571 CBS domain HER31_RS13885 PF01380 SIS domain HER31_RS13900 PF03968 OstA-like protein HER31_RS13905 PF12399 Branched-chain amino acid ATP-binding cassette transporter HER31_RS13905 PF00005 ABC transporter HER31_RS13910 PF00309 Sigma-54 factor, Activator interacting domain (AID) HER31_RS13910 PF04963 Sigma-54 factor, core binding domain HER31_RS13910 PF04552 Sigma-54, DNA binding domain HER31_RS13915 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HER31_RS13920 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HER31_RS13925 PF03668 P-loop ATPase protein family HER31_RS13930 PF00381 PTS HPr component phosphorylation site HER31_RS13940 PF00962 Adenosine/AMP deaminase HER31_RS13950 PF01523 Putative modulator of DNA gyrase HER31_RS13955 PF04751 Protein of unknown function (DUF615) HER31_RS13970 PF13533 Biotin-lipoyl like HER31_RS13980 PF01523 Putative modulator of DNA gyrase HER31_RS13985 PF00795 Carbon-nitrogen hydrolase HER31_RS13995 PF10150 Ribonuclease E/G family HER31_RS13995 PF00575 S1 RNA binding domain HER31_RS14000 PF02545 Maf-like protein HER31_RS14005 PF04093 rod shape-determining protein MreD HER31_RS14010 PF04085 rod shape-determining protein MreC HER31_RS14045 PF00114 Pilin (bacterial filament) HER31_RS14045 PF07963 Prokaryotic N-terminal methylation motif HER31_RS14050 PF07963 Prokaryotic N-terminal methylation motif HER31_RS14050 PF08334 Type II secretion system (T2SS), protein G HER31_RS14060 PF00482 Type II secretion system (T2SS), protein F HER31_RS14065 PF00437 Type II/IV secretion system protein HER31_RS14075 PF01471 Putative peptidoglycan binding domain HER31_RS14075 PF13401 AAA domain HER31_RS14080 PF00263 Bacterial type II and III secretion system protein HER31_RS14080 PF03958 Bacterial type II/III secretion system short domain HER31_RS14105 PF17157 Gammaproteobacterial periplasmic sensor domain HER31_RS14105 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS14105 PF00563 EAL domain HER31_RS14110 PF03466 LysR substrate binding domain HER31_RS14110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS14135 PF00593 TonB dependent receptor HER31_RS14135 PF07715 TonB-dependent Receptor Plug Domain HER31_RS14155 PF13378 Enolase C-terminal domain-like HER31_RS14155 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HER31_RS14160 PF02028 BCCT, betaine/carnitine/choline family transporter HER31_RS14185 PF00436 Single-strand binding protein family HER31_RS14195 PF07690 Major Facilitator Superfamily HER31_RS14200 PF17760 UvrA interaction domain HER31_RS14200 PF00005 ABC transporter HER31_RS14200 PF17755 UvrA DNA-binding domain HER31_RS14210 PF14537 Cytochrome c3 HER31_RS14210 PF00890 FAD binding domain HER31_RS14225 PF13091 PLD-like domain HER31_RS14230 PF00266 Aminotransferase class-V HER31_RS14245 PF00672 HAMP domain HER31_RS14245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HER31_RS14250 PF02219 Methylenetetrahydrofolate reductase HER31_RS14255 PF03447 Homoserine dehydrogenase, NAD binding domain HER31_RS14255 PF00696 Amino acid kinase family HER31_RS14255 PF00742 Homoserine dehydrogenase HER31_RS14260 PF01053 Cys/Met metabolism PLP-dependent enzyme HER31_RS14265 PF01340 Met Apo-repressor, MetJ HER31_RS14275 PF04143 Sulphur transport HER31_RS14280 PF05935 Arylsulfotransferase (ASST) HER31_RS14280 PF17425 Arylsulfotransferase Ig-like domain HER31_RS14285 PF00390 Malic enzyme, N-terminal domain HER31_RS14285 PF03949 Malic enzyme, NAD binding domain HER31_RS14290 PF00691 OmpA family HER31_RS14295 PF01197 Ribosomal protein L31 HER31_RS14300 PF17764 3′ DNA-binding domain (3′BD) HER31_RS14300 PF00271 Helicase conserved C-terminal domain HER31_RS14300 PF00270 DEAD/DEAH box helicase HER31_RS14300 PF18074 Primosomal protein N C-terminal domain HER31_RS14300 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HER31_RS14305 PF05746 DALR anticodon binding domain HER31_RS14305 PF00750 tRNA synthetases class I (R) HER31_RS14305 PF03485 Arginyl tRNA synthetase N terminal domain HER31_RS14325 PF12729 Four helix bundle sensory module for signal transduction HER31_RS14325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HER31_RS14325 PF00672 HAMP domain HER31_RS14330 PF00227 Proteasome subunit HER31_RS14335 PF07724 AAA domain (Cdc48 subfamily) HER31_RS14335 PF00004 ATPase family associated with various cellular activities (AAA) HER31_RS14350 PF11066 Protein of unknown function (DUF2867) HER31_RS14350 PF13460 NAD(P)H-binding HER31_RS14360 PF01569 PAP2 superfamily HER31_RS14370 PF03737 Aldolase/RraA HER31_RS14385 PF01209 ubiE/COQ5 methyltransferase family HER31_RS14395 PF03109 ABC1 family HER31_RS14400 PF02416 mttA/Hcf106 family HER31_RS14410 PF00902 Sec-independent protein translocase protein (TatC) HER31_RS14420 PF01026 TatD related DNase HER31_RS14425 PF00490 Delta-aminolevulinic acid dehydratase HER31_RS14435 PF00892 EamA-like transporter family HER31_RS14440 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HER31_RS14440 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER31_RS14450 PF00375 Sodium:dicarboxylate symporter family HER31_RS14455 PF02541 Ppx/GppA phosphatase family HER31_RS14460 PF00271 Helicase conserved C-terminal domain HER31_RS14460 PF00270 DEAD/DEAH box helicase HER31_RS14465 PF00085 Thioredoxin HER31_RS14470 PF07497 Rho termination factor, RNA-binding domain HER31_RS14470 PF07498 Rho termination factor, N-terminal domain HER31_RS14470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HER31_RS14485 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HER31_RS14490 PF00175 Oxidoreductase NAD-binding domain HER31_RS14490 PF00970 Oxidoreductase FAD-binding domain HER31_RS14500 PF01040 UbiA prenyltransferase family HER31_RS14510 PF13247 4Fe-4S dicluster domain HER31_RS14515 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HER31_RS14515 PF00384 Molybdopterin oxidoreductase HER31_RS14515 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS14515 PF01568 Molydopterin dinucleotide binding domain HER31_RS14515 PF12838 4Fe-4S dicluster domain HER31_RS14525 PF02613 Nitrate reductase delta subunit HER31_RS14545 PF02634 FdhD/NarQ family HER31_RS14555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS14555 PF00989 PAS fold HER31_RS14555 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS14560 PF00072 Response regulator receiver domain HER31_RS14560 PF02954 Bacterial regulatory protein, Fis family HER31_RS14560 PF00158 Sigma-54 interaction domain HER31_RS14565 PF12849 PBP superfamily domain HER31_RS14570 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS14575 PF08402 TOBE domain HER31_RS14575 PF00005 ABC transporter HER31_RS14580 PF12804 MobA-like NTP transferase domain HER31_RS14585 PF03454 MoeA C-terminal region (domain IV) HER31_RS14585 PF00994 Probable molybdopterin binding domain HER31_RS14585 PF03453 MoeA N-terminal region (domain I and II) HER31_RS14590 PF04055 Radical SAM superfamily HER31_RS14590 PF06463 Molybdenum Cofactor Synthesis C HER31_RS14600 PF00664 ABC transporter transmembrane region HER31_RS14600 PF00005 ABC transporter HER31_RS14600 PF03412 Peptidase C39 family HER31_RS14615 PF05736 OprF membrane domain HER31_RS14615 PF00691 OmpA family HER31_RS14640 PF13361 UvrD-like helicase C-terminal domain HER31_RS14640 PF00580 UvrD/REP helicase N-terminal domain HER31_RS14645 PF04380 Membrane fusogenic activity HER31_RS14650 PF02028 BCCT, betaine/carnitine/choline family transporter HER31_RS14655 PF02028 BCCT, betaine/carnitine/choline family transporter HER31_RS14670 PF00005 ABC transporter HER31_RS14670 PF03459 TOBE domain HER31_RS14675 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS14680 PF02613 Nitrate reductase delta subunit HER31_RS14685 PF13247 4Fe-4S dicluster domain HER31_RS14685 PF12800 4Fe-4S binding domain HER31_RS14690 PF00384 Molybdopterin oxidoreductase HER31_RS14690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS14690 PF01568 Molydopterin dinucleotide binding domain HER31_RS14695 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB HER31_RS14700 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HER31_RS14705 PF12800 4Fe-4S binding domain HER31_RS14705 PF13247 4Fe-4S dicluster domain HER31_RS14710 PF01568 Molydopterin dinucleotide binding domain HER31_RS14710 PF00384 Molybdopterin oxidoreductase HER31_RS14710 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS14720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS14720 PF03466 LysR substrate binding domain HER31_RS14730 PF05935 Arylsulfotransferase (ASST) HER31_RS14730 PF17425 Arylsulfotransferase Ig-like domain HER31_RS14750 PF00266 Aminotransferase class-V HER31_RS14760 PF03466 LysR substrate binding domain HER31_RS14760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS14770 PF00890 FAD binding domain HER31_RS14770 PF14537 Cytochrome c3 HER31_RS14780 PF00873 AcrB/AcrD/AcrF family HER31_RS14790 PF02254 TrkA-N domain HER31_RS14790 PF00999 Sodium/hydrogen exchanger family HER31_RS14795 PF00585 C-terminal regulatory domain of Threonine dehydratase HER31_RS14795 PF00291 Pyridoxal-phosphate dependent enzyme HER31_RS14800 PF00920 Dehydratase family HER31_RS14805 PF01063 Amino-transferase class IV HER31_RS14810 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HER31_RS14815 PF00205 Thiamine pyrophosphate enzyme, central domain HER31_RS14815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HER31_RS14815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HER31_RS14820 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HER31_RS14820 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HER31_RS14825 PF13335 Magnesium chelatase, subunit ChlI C-terminal HER31_RS14825 PF01078 Magnesium chelatase, subunit ChlI HER31_RS14840 PF02796 Helix-turn-helix domain of resolvase HER31_RS14840 PF00239 Resolvase, N terminal domain HER31_RS14910 PF13335 Magnesium chelatase, subunit ChlI C-terminal HER31_RS14910 PF01078 Magnesium chelatase, subunit ChlI HER31_RS14920 PF01553 Acyltransferase HER31_RS14925 PF01553 Acyltransferase HER31_RS14930 PF00392 Bacterial regulatory proteins, gntR family HER31_RS14930 PF07729 FCD domain HER31_RS14940 PF00285 Citrate synthase, C-terminal domain HER31_RS14945 PF00330 Aconitase family (aconitate hydratase) HER31_RS14945 PF00694 Aconitase C-terminal domain HER31_RS14950 PF04303 PrpF protein HER31_RS14955 PF14245 Type IV pilin PilA HER31_RS14955 PF07963 Prokaryotic N-terminal methylation motif HER31_RS14970 PF06005 Cell division protein ZapB HER31_RS14980 PF01323 DSBA-like thioredoxin domain HER31_RS14985 PF01636 Phosphotransferase enzyme family HER31_RS14995 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HER31_RS15000 PF00326 Prolyl oligopeptidase family HER31_RS15005 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HER31_RS15010 PF00694 Aconitase C-terminal domain HER31_RS15015 PF00330 Aconitase family (aconitate hydratase) HER31_RS15020 PF00180 Isocitrate/isopropylmalate dehydrogenase HER31_RS15025 PF08502 LeuA allosteric (dimerisation) domain HER31_RS15025 PF00682 HMGL-like HER31_RS15035 PF00270 DEAD/DEAH box helicase HER31_RS15035 PF00271 Helicase conserved C-terminal domain HER31_RS15035 PF00570 HRDC domain HER31_RS15035 PF16124 RecQ zinc-binding HER31_RS15035 PF09382 RQC domain HER31_RS15040 PF03061 Thioesterase superfamily HER31_RS15045 PF00892 EamA-like transporter family HER31_RS15055 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HER31_RS15060 PF02602 Uroporphyrinogen-III synthase HemD HER31_RS15065 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HER31_RS15065 PF03900 Porphobilinogen deaminase, C-terminal domain HER31_RS15070 PF12633 Adenylate cyclase NT domain HER31_RS15070 PF01295 Adenylate cyclase, class-I HER31_RS15085 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HER31_RS15085 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HER31_RS15090 PF01678 Diaminopimelate epimerase HER31_RS15100 PF02899 Phage integrase, N-terminal SAM-like domain HER31_RS15100 PF00589 Phage integrase family HER31_RS15105 PF02424 ApbE family HER31_RS15115 PF03707 Bacterial signalling protein N terminal repeat HER31_RS15115 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS15115 PF00563 EAL domain HER31_RS15125 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS15125 PF03707 Bacterial signalling protein N terminal repeat HER31_RS15125 PF00563 EAL domain HER31_RS15130 PF13419 Haloacid dehalogenase-like hydrolase HER31_RS15135 PF13361 UvrD-like helicase C-terminal domain HER31_RS15135 PF00580 UvrD/REP helicase N-terminal domain HER31_RS15140 PF01545 Cation efflux family HER31_RS15140 PF16916 Dimerisation domain of Zinc Transporter HER31_RS15150 PF00486 Transcriptional regulatory protein, C terminal HER31_RS15150 PF00072 Response regulator receiver domain HER31_RS15155 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS15155 PF00672 HAMP domain HER31_RS15155 PF16527 Two-component sensor protein CpxA, periplasmic domain HER31_RS15155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS15180 PF00588 SpoU rRNA Methylase family HER31_RS15185 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) HER31_RS15195 PF00679 Elongation factor G C-terminus HER31_RS15195 PF14492 Elongation Factor G, domain II HER31_RS15195 PF03764 Elongation factor G, domain IV HER31_RS15195 PF00009 Elongation factor Tu GTP binding domain HER31_RS15195 PF03144 Elongation factor Tu domain 2 HER31_RS15200 PF03576 Peptidase family S58 HER31_RS15215 PF17425 Arylsulfotransferase Ig-like domain HER31_RS15215 PF05935 Arylsulfotransferase (ASST) HER31_RS15225 PF01323 DSBA-like thioredoxin domain HER31_RS15230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS15230 PF03466 LysR substrate binding domain HER31_RS15250 PF17425 Arylsulfotransferase Ig-like domain HER31_RS15250 PF05935 Arylsulfotransferase (ASST) HER31_RS15265 PF17425 Arylsulfotransferase Ig-like domain HER31_RS15265 PF05935 Arylsulfotransferase (ASST) HER31_RS15270 PF03222 Tryptophan/tyrosine permease family HER31_RS15280 PF02600 Disulfide bond formation protein DsbB HER31_RS15285 PF01323 DSBA-like thioredoxin domain HER31_RS15290 PF05935 Arylsulfotransferase (ASST) HER31_RS15290 PF17425 Arylsulfotransferase Ig-like domain HER31_RS15300 PF02600 Disulfide bond formation protein DsbB HER31_RS15305 PF01323 DSBA-like thioredoxin domain HER31_RS15310 PF02028 BCCT, betaine/carnitine/choline family transporter HER31_RS15315 PF05368 NmrA-like family HER31_RS15320 PF00691 OmpA family HER31_RS15320 PF05736 OprF membrane domain HER31_RS15325 PF02600 Disulfide bond formation protein DsbB HER31_RS15330 PF01323 DSBA-like thioredoxin domain HER31_RS15340 PF17425 Arylsulfotransferase Ig-like domain HER31_RS15340 PF05935 Arylsulfotransferase (ASST) HER31_RS15345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS15345 PF03466 LysR substrate binding domain HER31_RS15380 PF00210 Ferritin-like domain HER31_RS15390 PF04445 Putative SAM-dependent methyltransferase HER31_RS15400 PF01432 Peptidase family M3 HER31_RS15410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HER31_RS15410 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER31_RS15420 PF00384 Molybdopterin oxidoreductase HER31_RS15420 PF01568 Molydopterin dinucleotide binding domain HER31_RS15425 PF13247 4Fe-4S dicluster domain HER31_RS15425 PF00037 4Fe-4S binding domain HER31_RS15430 PF01451 Low molecular weight phosphotyrosine protein phosphatase HER31_RS15440 PF00753 Metallo-beta-lactamase superfamily HER31_RS15445 PF00440 Bacterial regulatory proteins, tetR family HER31_RS15450 PF04205 FMN-binding domain HER31_RS15450 PF00890 FAD binding domain HER31_RS15475 PF01037 Lrp/AsnC ligand binding domain HER31_RS15485 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HER31_RS15485 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HER31_RS15490 PF00425 chorismate binding enzyme HER31_RS15495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HER31_RS15495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HER31_RS15495 PF16582 Middle domain of thiamine pyrophosphate HER31_RS15500 PF12697 Alpha/beta hydrolase family HER31_RS15510 PF13378 Enolase C-terminal domain-like HER31_RS15515 PF00501 AMP-binding enzyme HER31_RS15550 PF00132 Bacterial transferase hexapeptide (six repeats) HER31_RS15555 PF07369 Protein of unknown function (DUF1488) HER31_RS15560 PF08501 Shikimate dehydrogenase substrate binding domain HER31_RS15560 PF01488 Shikimate / quinate 5-dehydrogenase HER31_RS15560 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HER31_RS15565 PF01218 Coproporphyrinogen III oxidase HER31_RS15575 PF00731 AIR carboxylase HER31_RS15580 PF01396 Topoisomerase DNA binding C4 zinc finger HER31_RS15585 PF04361 Protein of unknown function (DUF494) HER31_RS15590 PF17782 DprA winged helix domain HER31_RS15590 PF02481 DNA recombination-mediator protein A HER31_RS15600 PF01327 Polypeptide deformylase HER31_RS15605 PF00551 Formyl transferase HER31_RS15605 PF02911 Formyl transferase, C-terminal domain HER31_RS15610 PF01189 16S rRNA methyltransferase RsmB/F HER31_RS15610 PF01029 NusB family HER31_RS15615 PF02254 TrkA-N domain HER31_RS15615 PF02080 TrkA-C domain HER31_RS15630 PF01022 Bacterial regulatory protein, arsR family HER31_RS15635 PF12724 Flavodoxin domain HER31_RS15640 PF02386 Cation transport protein HER31_RS15645 PF09186 Domain of unknown function (DUF1949) HER31_RS15645 PF01205 Uncharacterized protein family UPF0029 HER31_RS15650 PF00557 Metallopeptidase family M24 HER31_RS15655 PF00378 Enoyl-CoA hydratase/isomerase HER31_RS15655 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HER31_RS15655 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HER31_RS15660 PF00108 Thiolase, N-terminal domain HER31_RS15660 PF02803 Thiolase, C-terminal domain HER31_RS15665 PF01206 Sulfurtransferase TusA HER31_RS15670 PF00326 Prolyl oligopeptidase family HER31_RS15670 PF07676 WD40-like Beta Propeller Repeat HER31_RS15675 PF03352 Methyladenine glycosylase HER31_RS15680 PF02091 Glycyl-tRNA synthetase alpha subunit HER31_RS15685 PF05746 DALR anticodon binding domain HER31_RS15685 PF02092 Glycyl-tRNA synthetase beta subunit HER31_RS15690 PF00478 IMP dehydrogenase / GMP reductase domain HER31_RS15695 PF01906 Putative heavy-metal-binding HER31_RS15700 PF00986 DNA gyrase B subunit, carboxyl terminus HER31_RS15700 PF00204 DNA gyrase B HER31_RS15700 PF01751 Toprim domain HER31_RS15700 PF18053 DNA gyrase B subunit insert domain HER31_RS15700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS15705 PF02463 RecF/RecN/SMC N terminal domain HER31_RS15710 PF00712 DNA polymerase III beta subunit, N-terminal domain HER31_RS15710 PF02768 DNA polymerase III beta subunit, C-terminal domain HER31_RS15710 PF02767 DNA polymerase III beta subunit, central domain HER31_RS15715 PF11638 DnaA N-terminal domain HER31_RS15715 PF08299 Bacterial dnaA protein helix-turn-helix HER31_RS15715 PF00308 Bacterial dnaA protein HER31_RS15720 PF00468 Ribosomal protein L34 HER31_RS15725 PF00825 Ribonuclease P HER31_RS15730 PF01809 Putative membrane protein insertion efficiency factor HER31_RS15735 PF14849 YidC periplasmic domain HER31_RS15735 PF02096 60Kd inner membrane protein HER31_RS15740 PF01926 50S ribosome-binding GTPase HER31_RS15740 PF12631 MnmE helical domain HER31_RS15740 PF10396 GTP-binding protein TrmE N-terminus HER31_RS15745 PF00258 Flavodoxin HER31_RS15750 PF13932 GidA associated domain HER31_RS15750 PF01134 Glucose inhibited division protein A HER31_RS15755 PF02527 rRNA small subunit methyltransferase G HER31_RS15760 PF13614 AAA domain HER31_RS15765 PF17762 HTH domain found in ParB protein HER31_RS15765 PF02195 ParB-like nuclease domain HER31_RS15775 PF00119 ATP synthase A chain HER31_RS15780 PF00137 ATP synthase subunit C HER31_RS15785 PF00430 ATP synthase B/B' CF(0) HER31_RS15790 PF00213 ATP synthase delta (OSCP) subunit HER31_RS15795 PF00306 ATP synthase alpha/beta chain, C terminal domain HER31_RS15795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HER31_RS15795 PF02874 ATP synthase alpha/beta family, beta-barrel domain HER31_RS15800 PF00231 ATP synthase HER31_RS15805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HER31_RS15805 PF02874 ATP synthase alpha/beta family, beta-barrel domain HER31_RS15810 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HER31_RS15810 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HER31_RS15820 PF12804 MobA-like NTP transferase domain HER31_RS15820 PF14602 Hexapeptide repeat of succinyl-transferase HER31_RS15820 PF00132 Bacterial transferase hexapeptide (six repeats) HER31_RS15830 PF08220 DeoR-like helix-turn-helix domain HER31_RS15830 PF00455 DeoR C terminal sensor domain HER31_RS15835 PF01380 SIS domain HER31_RS15845 PF13746 4Fe-4S dicluster domain HER31_RS15845 PF12801 4Fe-4S binding domain HER31_RS15845 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HER31_RS15885 PF00501 AMP-binding enzyme HER31_RS15900 PF00924 Mechanosensitive ion channel HER31_RS15910 PF11871 Domain of unknown function (DUF3391) HER31_RS15910 PF01966 HD domain HER31_RS15915 PF01914 MarC family integral membrane protein HER31_RS15930 PF02881 SRP54-type protein, helical bundle domain HER31_RS15930 PF00448 SRP54-type protein, GTPase domain HER31_RS15935 PF00005 ABC transporter HER31_RS15940 PF18075 FtsX extracellular domain HER31_RS15945 PF04545 Sigma-70, region 4 HER31_RS15945 PF04542 Sigma-70 region 2 HER31_RS15950 PF03692 Putative zinc- or iron-chelating domain HER31_RS15955 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HER31_RS15960 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB HER31_RS15965 PF00384 Molybdopterin oxidoreductase HER31_RS15965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS15965 PF01568 Molydopterin dinucleotide binding domain HER31_RS15970 PF13247 4Fe-4S dicluster domain HER31_RS15970 PF12800 4Fe-4S binding domain HER31_RS15975 PF02613 Nitrate reductase delta subunit HER31_RS15980 PF04748 Divergent polysaccharide deacetylase HER31_RS15985 PF03572 Peptidase family S41 HER31_RS15985 PF13180 PDZ domain HER31_RS15990 PF01551 Peptidase family M23 HER31_RS15995 PF01676 Metalloenzyme superfamily HER31_RS15995 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HER31_RS16000 PF00581 Rhodanese-like domain HER31_RS16005 PF02556 Preprotein translocase subunit SecB HER31_RS16010 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HER31_RS16010 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HER31_RS16020 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HER31_RS16020 PF01464 Transglycosylase SLT domain HER31_RS16025 PF03466 LysR substrate binding domain HER31_RS16025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS16035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS16035 PF03466 LysR substrate binding domain HER31_RS16040 PF01226 Formate/nitrite transporter HER31_RS16045 PF13426 PAS domain HER31_RS16045 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS16045 PF00563 EAL domain HER31_RS16050 PF12146 Serine aminopeptidase, S33 HER31_RS16065 PF04055 Radical SAM superfamily HER31_RS16065 PF06969 HemN C-terminal domain HER31_RS16075 PF04220 Der GTPase activator (YihI) HER31_RS16085 PF00034 Cytochrome c HER31_RS16090 PF01926 50S ribosome-binding GTPase HER31_RS16095 PF01367 5'-3' exonuclease, C-terminal SAM fold HER31_RS16095 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HER31_RS16095 PF00476 DNA polymerase family A HER31_RS16095 PF01612 3'-5' exonuclease HER31_RS16110 PF01966 HD domain HER31_RS16115 PF02592 Putative vitamin uptake transporter HER31_RS16120 PF00994 Probable molybdopterin binding domain HER31_RS16120 PF03454 MoeA C-terminal region (domain IV) HER31_RS16120 PF03453 MoeA N-terminal region (domain I and II) HER31_RS16125 PF00899 ThiF family HER31_RS16130 PF04226 Transglycosylase associated protein HER31_RS16135 PF13302 Acetyltransferase (GNAT) domain HER31_RS16140 PF00849 RNA pseudouridylate synthase HER31_RS16145 PF02391 MoaE protein HER31_RS16150 PF02597 ThiS family HER31_RS16155 PF01967 MoaC family HER31_RS16160 PF00994 Probable molybdopterin binding domain HER31_RS16165 PF06463 Molybdenum Cofactor Synthesis C HER31_RS16165 PF04055 Radical SAM superfamily HER31_RS16175 PF03466 LysR substrate binding domain HER31_RS16175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS16180 PF17425 Arylsulfotransferase Ig-like domain HER31_RS16180 PF05935 Arylsulfotransferase (ASST) HER31_RS16185 PF02600 Disulfide bond formation protein DsbB HER31_RS16190 PF01323 DSBA-like thioredoxin domain HER31_RS16195 PF17158 Membrane-associated sensor, integral membrane domain HER31_RS16195 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS16200 PF00294 pfkB family carbohydrate kinase HER31_RS16220 PF13247 4Fe-4S dicluster domain HER31_RS16225 PF00384 Molybdopterin oxidoreductase HER31_RS16225 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HER31_RS16225 PF01568 Molydopterin dinucleotide binding domain HER31_RS16235 PF02954 Bacterial regulatory protein, Fis family HER31_RS16235 PF00072 Response regulator receiver domain HER31_RS16235 PF00158 Sigma-54 interaction domain HER31_RS16240 PF00989 PAS fold HER31_RS16240 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS16240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS16250 PF03951 Glutamine synthetase, beta-Grasp domain HER31_RS16250 PF00120 Glutamine synthetase, catalytic domain HER31_RS16260 PF13649 Methyltransferase domain HER31_RS16265 PF00849 RNA pseudouridylate synthase HER31_RS16265 PF01479 S4 domain HER31_RS16280 PF03631 Virulence factor BrkB HER31_RS16285 PF02580 D-Tyr-tRNA(Tyr) deacylase HER31_RS16295 PF00270 DEAD/DEAH box helicase HER31_RS16295 PF17191 RecG wedge domain HER31_RS16295 PF00271 Helicase conserved C-terminal domain HER31_RS16300 PF00501 AMP-binding enzyme HER31_RS16305 PF00588 SpoU rRNA Methylase family HER31_RS16305 PF12105 SpoU, rRNA methylase, C-terminal HER31_RS16310 PF01042 Endoribonuclease L-PSP HER31_RS16315 PF02824 TGS domain HER31_RS16315 PF04607 Region found in RelA / SpoT proteins HER31_RS16315 PF13291 ACT domain HER31_RS16320 PF01192 RNA polymerase Rpb6 HER31_RS16325 PF00625 Guanylate kinase HER31_RS16330 PF02646 RmuC family HER31_RS16335 PF01156 Inosine-uridine preferring nucleoside hydrolase HER31_RS16340 PF01758 Sodium Bile acid symporter family HER31_RS16380 PF03755 YicC-like family, N-terminal region HER31_RS16380 PF08340 Domain of unknown function (DUF1732) HER31_RS16385 PF01138 3' exoribonuclease family, domain 1 HER31_RS16385 PF03725 3' exoribonuclease family, domain 2 HER31_RS16390 PF00156 Phosphoribosyl transferase domain HER31_RS16395 PF00440 Bacterial regulatory proteins, tetR family HER31_RS16400 PF00692 dUTPase HER31_RS16405 PF04127 DNA / pantothenate metabolism flavoprotein HER31_RS16405 PF02441 Flavoprotein HER31_RS16410 PF04002 RadC-like JAB domain HER31_RS16415 PF00830 Ribosomal L28 family HER31_RS16420 PF00471 Ribosomal protein L33 HER31_RS16425 PF01757 Acyltransferase family HER31_RS16435 PF06827 Zinc finger found in FPG and IleRS HER31_RS16435 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HER31_RS16435 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HER31_RS16440 PF01467 Cytidylyltransferase-like HER31_RS16445 PF01370 NAD dependent epimerase/dehydratase family HER31_RS16450 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HER31_RS16460 PF00534 Glycosyl transferases group 1 HER31_RS16460 PF13439 Glycosyltransferase Family 4 HER31_RS16465 PF13439 Glycosyltransferase Family 4 HER31_RS16465 PF00534 Glycosyl transferases group 1 HER31_RS16470 PF00535 Glycosyl transferase family 2 HER31_RS16480 PF00534 Glycosyl transferases group 1 HER31_RS16480 PF17101 Stealth protein CR1, conserved region 1 HER31_RS16480 PF11380 Stealth protein CR2, conserved region 2 HER31_RS16480 PF17102 Stealth protein CR3, conserved region 3 HER31_RS16480 PF17103 Stealth protein CR4, conserved region 4 HER31_RS16485 PF00534 Glycosyl transferases group 1 HER31_RS16485 PF13439 Glycosyltransferase Family 4 HER31_RS16490 PF13580 SIS domain HER31_RS16500 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HER31_RS16510 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HER31_RS16515 PF01370 NAD dependent epimerase/dehydratase family HER31_RS16525 PF00155 Aminotransferase class I and II HER31_RS16530 PF08240 Alcohol dehydrogenase GroES-like domain HER31_RS16530 PF00107 Zinc-binding dehydrogenase HER31_RS16540 PF01694 Rhomboid family HER31_RS16540 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HER31_RS16550 PF04345 Chorismate lyase HER31_RS16565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HER31_RS16565 PF00529 HlyD membrane-fusion protein of T1SS HER31_RS16570 PF00873 AcrB/AcrD/AcrF family HER31_RS16575 PF00043 Glutathione S-transferase, C-terminal domain HER31_RS16575 PF02798 Glutathione S-transferase, N-terminal domain HER31_RS16585 PF01145 SPFH domain / Band 7 family HER31_RS16585 PF16200 C-terminal region of band_7 HER31_RS16595 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HER31_RS16595 PF01464 Transglycosylase SLT domain HER31_RS16635 PF01553 Acyltransferase HER31_RS16640 PF01726 LexA DNA binding domain HER31_RS16640 PF00717 Peptidase S24-like HER31_RS16650 PF02790 Cytochrome C oxidase subunit II, transmembrane domain HER31_RS16650 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HER31_RS16655 PF00115 Cytochrome C and Quinol oxidase polypeptide I HER31_RS16660 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 HER31_RS16665 PF00510 Cytochrome c oxidase subunit III HER31_RS16685 PF02628 Cytochrome oxidase assembly protein HER31_RS16690 PF01040 UbiA prenyltransferase family HER31_RS16695 PF02630 SCO1/SenC HER31_RS16700 PF14883 Hypothetical glycosyl hydrolase family 13 HER31_RS16700 PF01522 Polysaccharide deacetylase HER31_RS16705 PF01554 MatE HER31_RS16710 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS16715 PF01106 NifU-like domain HER31_RS16715 PF01521 Iron-sulphur cluster biosynthesis HER31_RS16720 PF00156 Phosphoribosyl transferase domain HER31_RS16725 PF00561 alpha/beta hydrolase fold HER31_RS16735 PF16921 Tex protein YqgF-like domain HER31_RS16735 PF17674 HHH domain HER31_RS16735 PF00575 S1 RNA binding domain HER31_RS16735 PF09371 Tex-like protein N-terminal domain HER31_RS16740 PF01272 Transcription elongation factor, GreA/GreB, C-term HER31_RS16740 PF03449 Transcription elongation factor, N-terminal HER31_RS16745 PF00072 Response regulator receiver domain HER31_RS16745 PF00486 Transcriptional regulatory protein, C terminal HER31_RS16750 PF00672 HAMP domain HER31_RS16750 PF00512 His Kinase A (phospho-acceptor) domain HER31_RS16750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER31_RS16755 PF01293 Phosphoenolpyruvate carboxykinase HER31_RS16760 PF01430 Hsp33 protein HER31_RS16765 PF01479 S4 domain HER31_RS16770 PF11356 Type II secretion system protein C HER31_RS16775 PF00263 Bacterial type II and III secretion system protein HER31_RS16775 PF03958 Bacterial type II/III secretion system short domain HER31_RS16780 PF00437 Type II/IV secretion system protein HER31_RS16785 PF00482 Type II secretion system (T2SS), protein F HER31_RS16790 PF07963 Prokaryotic N-terminal methylation motif HER31_RS16790 PF08334 Type II secretion system (T2SS), protein G HER31_RS16795 PF07963 Prokaryotic N-terminal methylation motif HER31_RS16795 PF12019 Type II transport protein GspH HER31_RS16800 PF02501 Type II secretion system (T2SS), protein I HER31_RS16800 PF07963 Prokaryotic N-terminal methylation motif HER31_RS16805 PF07963 Prokaryotic N-terminal methylation motif HER31_RS16805 PF11612 Type II secretion system (T2SS), protein J HER31_RS16810 PF03934 Type II secretion system (T2SS), protein K HER31_RS16815 PF05134 Type II secretion system (T2SS), protein L HER31_RS16815 PF12693 GspL periplasmic domain HER31_RS16820 PF04612 Type II secretion system (T2SS), protein M HER31_RS16825 PF01203 Type II secretion system (T2SS), protein N HER31_RS16830 PF00293 NUDIX domain HER31_RS16835 PF00459 Inositol monophosphatase family HER31_RS16850 PF00440 Bacterial regulatory proteins, tetR family HER31_RS16865 PF05958 tRNA (Uracil-5-)-methyltransferase HER31_RS16870 PF01177 Asp/Glu/Hydantoin racemase HER31_RS16895 PF01565 FAD binding domain HER31_RS16895 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HER31_RS16900 PF08279 HTH domain HER31_RS16900 PF02237 Biotin protein ligase C terminal domain HER31_RS16900 PF03099 Biotin/lipoate A/B protein ligase family HER31_RS16905 PF00485 Phosphoribulokinase / Uridine kinase family HER31_RS16930 PF00009 Elongation factor Tu GTP binding domain HER31_RS16930 PF03143 Elongation factor Tu C-terminal domain HER31_RS16930 PF03144 Elongation factor Tu domain 2 HER31_RS16935 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HER31_RS16940 PF02357 Transcription termination factor nusG HER31_RS16940 PF00467 KOW motif HER31_RS16945 PF03946 Ribosomal protein L11, N-terminal domain HER31_RS16945 PF00298 Ribosomal protein L11, RNA binding domain HER31_RS16950 PF00687 Ribosomal protein L1p/L10e family HER31_RS16955 PF00466 Ribosomal protein L10 HER31_RS16960 PF00542 Ribosomal protein L7/L12 C-terminal domain HER31_RS16960 PF16320 Ribosomal protein L7/L12 dimerisation domain HER31_RS16965 PF04560 RNA polymerase Rpb2, domain 7 HER31_RS16965 PF04563 RNA polymerase beta subunit HER31_RS16965 PF04561 RNA polymerase Rpb2, domain 2 HER31_RS16965 PF04565 RNA polymerase Rpb2, domain 3 HER31_RS16965 PF10385 RNA polymerase beta subunit external 1 domain HER31_RS16965 PF00562 RNA polymerase Rpb2, domain 6 HER31_RS16970 PF04997 RNA polymerase Rpb1, domain 1 HER31_RS16970 PF05000 RNA polymerase Rpb1, domain 4 HER31_RS16970 PF00623 RNA polymerase Rpb1, domain 2 HER31_RS16970 PF04983 RNA polymerase Rpb1, domain 3 HER31_RS16970 PF04998 RNA polymerase Rpb1, domain 5 HER31_RS16975 PF00164 Ribosomal protein S12/S23 HER31_RS16980 PF00177 Ribosomal protein S7p/S5e HER31_RS16985 PF00009 Elongation factor Tu GTP binding domain HER31_RS16985 PF00679 Elongation factor G C-terminus HER31_RS16985 PF03144 Elongation factor Tu domain 2 HER31_RS16985 PF14492 Elongation Factor G, domain II HER31_RS16985 PF03764 Elongation factor G, domain IV HER31_RS16990 PF00009 Elongation factor Tu GTP binding domain HER31_RS16990 PF03144 Elongation factor Tu domain 2 HER31_RS16990 PF03143 Elongation factor Tu C-terminal domain HER31_RS17010 PF01757 Acyltransferase family HER31_RS17020 PF13439 Glycosyltransferase Family 4 HER31_RS17020 PF00534 Glycosyl transferases group 1 HER31_RS17025 PF00535 Glycosyl transferase family 2 HER31_RS17040 PF00483 Nucleotidyl transferase HER31_RS17040 PF01050 Mannose-6-phosphate isomerase HER31_RS17045 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HER31_RS17045 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HER31_RS17045 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HER31_RS17045 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HER31_RS17050 PF02397 Bacterial sugar transferase HER31_RS17065 PF13614 AAA domain HER31_RS17070 PF00338 Ribosomal protein S10p/S20e HER31_RS17075 PF00297 Ribosomal protein L3 HER31_RS17080 PF00573 Ribosomal protein L4/L1 family HER31_RS17090 PF03947 Ribosomal Proteins L2, C-terminal domain HER31_RS17090 PF00181 Ribosomal Proteins L2, RNA binding domain HER31_RS17095 PF00203 Ribosomal protein S19 HER31_RS17100 PF00237 Ribosomal protein L22p/L17e HER31_RS17105 PF07650 KH domain HER31_RS17105 PF00189 Ribosomal protein S3, C-terminal domain HER31_RS17110 PF00252 Ribosomal protein L16p/L10e HER31_RS17115 PF00831 Ribosomal L29 protein HER31_RS17120 PF00366 Ribosomal protein S17 HER31_RS17125 PF00238 Ribosomal protein L14p/L23e HER31_RS17130 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HER31_RS17135 PF00281 Ribosomal protein L5 HER31_RS17135 PF00673 ribosomal L5P family C-terminus HER31_RS17140 PF00253 Ribosomal protein S14p/S29e HER31_RS17145 PF00410 Ribosomal protein S8 HER31_RS17150 PF00347 Ribosomal protein L6 HER31_RS17155 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HER31_RS17160 PF00333 Ribosomal protein S5, N-terminal domain HER31_RS17160 PF03719 Ribosomal protein S5, C-terminal domain HER31_RS17165 PF00327 Ribosomal protein L30p/L7e HER31_RS17170 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HER31_RS17175 PF00344 SecY translocase HER31_RS17180 PF00444 Ribosomal protein L36 HER31_RS17185 PF00416 Ribosomal protein S13/S18 HER31_RS17190 PF00411 Ribosomal protein S11 HER31_RS17195 PF01479 S4 domain HER31_RS17195 PF00163 Ribosomal protein S4/S9 N-terminal domain HER31_RS17200 PF01000 RNA polymerase Rpb3/RpoA insert domain HER31_RS17200 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HER31_RS17200 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HER31_RS17205 PF01196 Ribosomal protein L17 HER31_RS17215 PF03100 CcmE HER31_RS17225 PF01578 Cytochrome C assembly protein HER31_RS17230 PF03379 CcmB protein HER31_RS17235 PF00005 ABC transporter HER31_RS17240 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HER31_RS17245 PF03918 Cytochrome C biogenesis protein HER31_RS17250 PF01578 Cytochrome C assembly protein HER31_RS17250 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HER31_RS17255 PF08534 Redoxin HER31_RS17260 PF03918 Cytochrome C biogenesis protein HER31_RS17265 PF08534 Redoxin HER31_RS17300 PF00994 Probable molybdopterin binding domain HER31_RS17300 PF02464 Competence-damaged protein HER31_RS17310 PF00311 Phosphoenolpyruvate carboxylase HER31_RS17315 PF01118 Semialdehyde dehydrogenase, NAD binding domain HER31_RS17315 PF02774 Semialdehyde dehydrogenase, dimerisation domain HER31_RS17320 PF00696 Amino acid kinase family HER31_RS17325 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HER31_RS17325 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HER31_RS17335 PF14698 Argininosuccinate lyase C-terminal HER31_RS17335 PF00206 Lyase HER31_RS17335 PF00583 Acetyltransferase (GNAT) family HER31_RS17340 PF00912 Transglycosylase HER31_RS17340 PF17092 Penicillin-binding protein OB-like domain HER31_RS17340 PF00905 Penicillin binding protein transpeptidase domain HER31_RS17345 PF02491 SHS2 domain inserted in FTSA HER31_RS17365 PF03958 Bacterial type II/III secretion system short domain HER31_RS17365 PF11741 AMIN domain HER31_RS17365 PF07660 Secretin and TonB N terminus short domain HER31_RS17365 PF00263 Bacterial type II and III secretion system protein HER31_RS17370 PF01202 Shikimate kinase HER31_RS17375 PF01761 3-dehydroquinate synthase HER31_RS17385 PF02086 D12 class N6 adenine-specific DNA methyltransferase HER31_RS17400 PF00834 Ribulose-phosphate 3 epimerase family HER31_RS17405 PF13419 Haloacid dehalogenase-like hydrolase HER31_RS17410 PF00579 tRNA synthetases class I (W and Y) HER31_RS17415 PF04972 BON domain HER31_RS17420 PF13580 SIS domain HER31_RS17425 PF02021 Uncharacterised protein family UPF0102 HER31_RS17430 PF04348 LppC putative lipoprotein HER31_RS17435 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HER31_RS17450 PF02381 MraZ protein, putative antitoxin-like HER31_RS17455 PF01795 MraW methylase family HER31_RS17460 PF04999 Cell division protein FtsL HER31_RS17465 PF00905 Penicillin binding protein transpeptidase domain HER31_RS17465 PF03717 Penicillin-binding Protein dimerisation domain HER31_RS17470 PF02875 Mur ligase family, glutamate ligase domain HER31_RS17470 PF08245 Mur ligase middle domain HER31_RS17470 PF01225 Mur ligase family, catalytic domain HER31_RS17475 PF02875 Mur ligase family, glutamate ligase domain HER31_RS17475 PF01225 Mur ligase family, catalytic domain HER31_RS17475 PF08245 Mur ligase middle domain HER31_RS17480 PF00953 Glycosyl transferase family 4 HER31_RS17480 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HER31_RS17485 PF02875 Mur ligase family, glutamate ligase domain HER31_RS17485 PF08245 Mur ligase middle domain HER31_RS17490 PF01098 Cell cycle protein HER31_RS17495 PF04101 Glycosyltransferase family 28 C-terminal domain HER31_RS17495 PF03033 Glycosyltransferase family 28 N-terminal domain HER31_RS17500 PF08245 Mur ligase middle domain HER31_RS17500 PF02875 Mur ligase family, glutamate ligase domain HER31_RS17500 PF01225 Mur ligase family, catalytic domain HER31_RS17505 PF01820 D-ala D-ala ligase N-terminus HER31_RS17505 PF07478 D-ala D-ala ligase C-terminus HER31_RS17510 PF08478 POTRA domain, FtsQ-type HER31_RS17510 PF03799 Cell division protein FtsQ HER31_RS17515 PF02491 SHS2 domain inserted in FTSA HER31_RS17520 PF12327 FtsZ family, C-terminal domain HER31_RS17520 PF00091 Tubulin/FtsZ family, GTPase domain HER31_RS17525 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HER31_RS17535 PF01551 Peptidase family M23 HER31_RS17535 PF08525 Opacity-associated protein A N-terminal motif HER31_RS17535 PF01476 LysM domain HER31_RS17540 PF02810 SEC-C motif HER31_RS17540 PF01043 SecA preprotein cross-linking domain HER31_RS17540 PF07516 SecA Wing and Scaffold domain HER31_RS17540 PF07517 SecA DEAD-like domain HER31_RS17545 PF00293 NUDIX domain HER31_RS17555 PF03884 DNA gyrase inhibitor YacG HER31_RS17560 PF07072 Cell division protein HER31_RS17565 PF01121 Dephospho-CoA kinase HER31_RS17570 PF01478 Type IV leader peptidase family HER31_RS17570 PF06750 Bacterial Peptidase A24 N-terminal domain HER31_RS17575 PF00482 Type II secretion system (T2SS), protein F HER31_RS17580 PF00437 Type II/IV secretion system protein HER31_RS17580 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HER31_RS17590 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HER31_RS17590 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HER31_RS17600 PF01510 N-acetylmuramoyl-L-alanine amidase HER31_RS17610 PF00392 Bacterial regulatory proteins, gntR family HER31_RS17610 PF07729 FCD domain HER31_RS17615 PF00456 Transketolase, thiamine diphosphate binding domain HER31_RS17615 PF17831 Pyruvate dehydrogenase E1 component middle domain HER31_RS17620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HER31_RS17620 PF02817 e3 binding domain HER31_RS17620 PF00364 Biotin-requiring enzyme HER31_RS17625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HER31_RS17625 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER31_RS17630 PF00563 EAL domain HER31_RS17630 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS17630 PF03707 Bacterial signalling protein N terminal repeat HER31_RS17635 PF13419 Haloacid dehalogenase-like hydrolase HER31_RS17640 PF06434 Aconitate hydratase 2 N-terminus HER31_RS17640 PF00330 Aconitase family (aconitate hydratase) HER31_RS17640 PF11791 Aconitate B N-terminal domain HER31_RS17645 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HER31_RS17650 PF01208 Uroporphyrinogen decarboxylase (URO-D) HER31_RS17660 PF00294 pfkB family carbohydrate kinase HER31_RS17665 PF04227 Indigoidine synthase A like protein HER31_RS17670 PF03167 Uracil DNA glycosylase superfamily HER31_RS17675 PF00563 EAL domain HER31_RS17675 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS17675 PF08448 PAS fold HER31_RS17680 PF01734 Patatin-like phospholipase HER31_RS17685 PF04055 Radical SAM superfamily HER31_RS17685 PF11842 Domain of unknown function (DUF3362) HER31_RS17685 PF08497 Radical SAM N-terminal HER31_RS17690 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HER31_RS17690 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HER31_RS17700 PF00293 NUDIX domain HER31_RS17705 PF00270 DEAD/DEAH box helicase HER31_RS17705 PF11898 Domain of unknown function (DUF3418) HER31_RS17705 PF04408 Helicase associated domain (HA2) HER31_RS17705 PF00271 Helicase conserved C-terminal domain HER31_RS17705 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HER31_RS17735 PF02843 Phosphoribosylglycinamide synthetase, C domain HER31_RS17735 PF02844 Phosphoribosylglycinamide synthetase, N domain HER31_RS17735 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HER31_RS17740 PF01808 AICARFT/IMPCHase bienzyme HER31_RS17740 PF02142 MGS-like domain HER31_RS17745 PF13411 MerR HTH family regulatory protein HER31_RS17760 PF03956 Lysine exporter LysO HER31_RS17775 PF00270 DEAD/DEAH box helicase HER31_RS17775 PF00271 Helicase conserved C-terminal domain HER31_RS17780 PF13488 Glycine zipper HER31_RS17780 PF00691 OmpA family HER31_RS17795 PF00939 Sodium:sulfate symporter transmembrane region HER31_RS17805 PF01709 Transcriptional regulator HER31_RS17815 PF08439 Oligopeptidase F HER31_RS17815 PF01432 Peptidase family M3 HER31_RS17820 PF00176 SNF2 family N-terminal domain HER31_RS17820 PF00271 Helicase conserved C-terminal domain HER31_RS17820 PF12419 SNF2 Helicase protein HER31_RS17845 PF07859 alpha/beta hydrolase fold HER31_RS17855 PF02954 Bacterial regulatory protein, Fis family HER31_RS17860 PF01207 Dihydrouridine synthase (Dus) HER31_RS17875 PF02910 Fumarate reductase flavoprotein C-term HER31_RS17875 PF00890 FAD binding domain HER31_RS17880 PF13183 4Fe-4S dicluster domain HER31_RS17880 PF13085 2Fe-2S iron-sulfur cluster binding domain HER31_RS17890 PF02785 Biotin carboxylase C-terminal domain HER31_RS17890 PF00289 Biotin carboxylase, N-terminal domain HER31_RS17890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HER31_RS17895 PF00364 Biotin-requiring enzyme HER31_RS17900 PF01220 Dehydroquinase class II HER31_RS17905 PF00472 RF-1 domain HER31_RS17925 PF02190 ATP-dependent protease La (LON) substrate-binding domain HER31_RS17925 PF05362 Lon protease (S16) C-terminal proteolytic domain HER31_RS17925 PF00004 ATPase family associated with various cellular activities (AAA) HER31_RS17930 PF02687 FtsX-like permease family HER31_RS17930 PF12704 MacB-like periplasmic core domain HER31_RS17930 PF00005 ABC transporter HER31_RS17935 PF00005 ABC transporter HER31_RS17935 PF02687 FtsX-like permease family HER31_RS17935 PF12704 MacB-like periplasmic core domain HER31_RS17940 PF13533 Biotin-lipoyl like HER31_RS17945 PF02683 Cytochrome C biogenesis protein transmembrane region HER31_RS17945 PF11412 Disulphide bond corrector protein DsbC HER31_RS17950 PF03091 CutA1 divalent ion tolerance protein HER31_RS17955 PF04186 FxsA cytoplasmic membrane protein HER31_RS17960 PF01554 MatE HER31_RS17965 PF00166 Chaperonin 10 Kd subunit HER31_RS17970 PF00118 TCP-1/cpn60 chaperonin family HER31_RS17985 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HER31_RS17995 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER31_RS18020 PF04055 Radical SAM superfamily HER31_RS18030 PF00152 tRNA synthetases class II (D, K and N) HER31_RS18055 PF00210 Ferritin-like domain HER31_RS18060 PF04324 BFD-like [2Fe-2S] binding domain HER31_RS18065 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HER31_RS18070 PF03009 Glycerophosphoryl diester phosphodiesterase family HER31_RS18075 PF12795 Mechanosensitive ion channel porin domain HER31_RS18075 PF00924 Mechanosensitive ion channel HER31_RS18075 PF12794 Mechanosensitive ion channel inner membrane domain 1 HER31_RS18080 PF02666 Phosphatidylserine decarboxylase HER31_RS18085 PF03193 RsgA GTPase HER31_RS18090 PF00929 Exonuclease HER31_RS18125 PF03853 YjeF-related protein N-terminus HER31_RS18125 PF01256 Carbohydrate kinase HER31_RS18130 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HER31_RS18135 PF01520 N-acetylmuramoyl-L-alanine amidase HER31_RS18135 PF01476 LysM domain HER31_RS18140 PF08676 MutL C terminal dimerisation domain HER31_RS18140 PF01119 DNA mismatch repair protein, C-terminal domain HER31_RS18150 PF17209 Hfq protein HER31_RS18155 PF16360 GTP-binding GTPase Middle Region HER31_RS18155 PF13167 GTP-binding GTPase N-terminal HER31_RS18155 PF01926 50S ribosome-binding GTPase HER31_RS18160 PF01145 SPFH domain / Band 7 family HER31_RS18160 PF12221 Bacterial membrane protein N terminal HER31_RS18165 PF01145 SPFH domain / Band 7 family HER31_RS18170 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HER31_RS18175 PF00709 Adenylosuccinate synthetase HER31_RS18180 PF08238 Sel1 repeat HER31_RS18185 PF08206 Ribonuclease B OB domain HER31_RS18185 PF08461 Ribonuclease R winged-helix domain HER31_RS18185 PF00773 RNB domain HER31_RS18185 PF00575 S1 RNA binding domain HER31_RS18185 PF17876 Cold shock domain HER31_RS18190 PF00588 SpoU rRNA Methylase family HER31_RS18190 PF08032 RNA 2'-O ribose methyltransferase substrate binding HER31_RS18200 PF01250 Ribosomal protein S6 HER31_RS18205 PF00436 Single-strand binding protein family HER31_RS18210 PF01084 Ribosomal protein S18 HER31_RS18215 PF01281 Ribosomal protein L9, N-terminal domain HER31_RS18215 PF03948 Ribosomal protein L9, C-terminal domain HER31_RS18230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HER31_RS18230 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER31_RS18235 PF02909 Tetracyclin repressor-like, C-terminal domain HER31_RS18235 PF00440 Bacterial regulatory proteins, tetR family HER31_RS18240 PF00005 ABC transporter HER31_RS18245 PF00528 Binding-protein-dependent transport system inner membrane component HER31_RS18265 PF02472 Biopolymer transport protein ExbD/TolR HER31_RS18270 PF01618 MotA/TolQ/ExbB proton channel family HER31_RS18275 PF01618 MotA/TolQ/ExbB proton channel family HER31_RS18295 PF00005 ABC transporter HER31_RS18310 PF00593 TonB dependent receptor HER31_RS18310 PF07715 TonB-dependent Receptor Plug Domain HER31_RS18320 PF14537 Cytochrome c3 HER31_RS18320 PF00890 FAD binding domain HER31_RS18330 PF05593 RHS Repeat HER31_RS18345 PF00149 Calcineurin-like phosphoesterase HER31_RS18345 PF02872 5'-nucleotidase, C-terminal domain HER31_RS18350 PF02872 5'-nucleotidase, C-terminal domain HER31_RS18350 PF00149 Calcineurin-like phosphoesterase HER31_RS18355 PF00881 Nitroreductase family HER31_RS18365 PF02719 Polysaccharide biosynthesis protein HER31_RS18375 PF03466 LysR substrate binding domain HER31_RS18375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS18410 PF02627 Carboxymuconolactone decarboxylase family HER31_RS18415 PF17151 Periplasmic sensor domain HER31_RS18415 PF00990 Diguanylate cyclase, GGDEF domain HER31_RS18420 PF03739 Lipopolysaccharide export system permease LptF/LptG HER31_RS18425 PF03739 Lipopolysaccharide export system permease LptF/LptG HER31_RS18430 PF00883 Cytosol aminopeptidase family, catalytic domain HER31_RS18430 PF02789 Cytosol aminopeptidase family, N-terminal domain HER31_RS18440 PF00133 tRNA synthetases class I (I, L, M and V) HER31_RS18440 PF08264 Anticodon-binding domain of tRNA HER31_RS18440 PF10458 Valyl tRNA synthetase tRNA binding arm HER31_RS18460 PF00202 Aminotransferase class-III HER31_RS18465 PF00654 Voltage gated chloride channel HER31_RS18475 PF01521 Iron-sulphur cluster biosynthesis HER31_RS18485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HER31_RS18490 PF00873 AcrB/AcrD/AcrF family HER31_RS18500 PF00586 AIR synthase related protein, N-terminal domain HER31_RS18500 PF02769 AIR synthase related protein, C-terminal domain HER31_RS18505 PF02635 DsrE/DsrF-like family HER31_RS18510 PF12558 ATP-binding cassette cobalt transporter HER31_RS18510 PF00005 ABC transporter HER31_RS18515 PF00005 ABC transporter HER31_RS18530 PF00132 Bacterial transferase hexapeptide (six repeats) HER31_RS18530 PF03479 Plants and Prokaryotes Conserved (PCC) domain HER31_RS18530 PF12804 MobA-like NTP transferase domain HER31_RS18535 PF02769 AIR synthase related protein, C-terminal domain HER31_RS18535 PF00586 AIR synthase related protein, N-terminal domain HER31_RS18540 PF01924 Hydrogenase formation hypA family HER31_RS18545 PF01455 HupF/HypC family HER31_RS18550 PF01432 Peptidase family M3 HER31_RS18555 PF03466 LysR substrate binding domain HER31_RS18555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER31_RS18580 PF00106 short chain dehydrogenase HER31_RS18585 PF01734 Patatin-like phospholipase HER31_RS18600 PF00378 Enoyl-CoA hydratase/isomerase HER31_RS18605 PF02233 NAD(P) transhydrogenase beta subunit HER31_RS18610 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HER31_RS18615 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HER31_RS18615 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HER31_RS18620 PF00258 Flavodoxin HER31_RS18620 PF00175 Oxidoreductase NAD-binding domain HER31_RS18620 PF00667 FAD binding domain HER31_RS18625 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HER31_RS18625 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HER31_RS18630 PF01507 Phosphoadenosine phosphosulfate reductase family HER31_RS18640 PF03458 UPF0126 domain HER31_RS18650 PF01048 Phosphorylase superfamily HER31_RS18655 PF03616 Sodium/glutamate symporter HER31_RS18680 PF00069 Protein kinase domain HER31_RS18680 PF03793 PASTA domain HER31_RS18700 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HER31_RS18700 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER31_RS18705 PF00310 Glutamine amidotransferases class-II HER31_RS18705 PF01493 GXGXG motif HER31_RS18705 PF04898 Glutamate synthase central domain HER31_RS18705 PF01645 Conserved region in glutamate synthase HER31_RS18710 PF16199 Radical_SAM C-terminal domain HER31_RS18710 PF04055 Radical SAM superfamily HER31_RS18735 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HER31_RS18735 PF14824 Sirohaem biosynthesis protein central HER31_RS18735 PF10414 Sirohaem synthase dimerisation region