locus-tag class description SD28_RS00010 PF02021 Uncharacterised protein family UPF0102 SD28_RS00025 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SD28_RS00025 PF02222 ATP-grasp domain SD28_RS00030 PF00731 AIR carboxylase SD28_RS00035 PF00551 Formyl transferase SD28_RS00040 PF01259 SAICAR synthetase SD28_RS00045 PF00586 AIR synthase related protein, N-terminal domain SD28_RS00045 PF02769 AIR synthase related protein, C-terminal domain SD28_RS00050 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SD28_RS00050 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SD28_RS00065 PF01050 Mannose-6-phosphate isomerase SD28_RS00065 PF00483 Nucleotidyl transferase SD28_RS00070 PF00080 Copper/zinc superoxide dismutase (SODC) SD28_RS00075 PF01264 Chorismate synthase SD28_RS00080 PF09335 SNARE associated Golgi protein SD28_RS00090 PF18073 Rubredoxin metal binding domain SD28_RS00100 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SD28_RS00100 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SD28_RS00110 PF00403 Heavy-metal-associated domain SD28_RS00115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SD28_RS00115 PF03466 LysR substrate binding domain SD28_RS00125 PF01435 Peptidase family M48 SD28_RS00135 PF03725 3' exoribonuclease family, domain 2 SD28_RS00135 PF01138 3' exoribonuclease family, domain 1 SD28_RS00145 PF01040 UbiA prenyltransferase family SD28_RS00160 PF01925 Sulfite exporter TauE/SafE SD28_RS00165 PF08348 YheO-like PAS domain SD28_RS00165 PF13309 HTH domain SD28_RS00175 PF18693 TRAM domain SD28_RS00175 PF04055 Radical SAM superfamily SD28_RS00175 PF00919 Uncharacterized protein family UPF0004 SD28_RS00180 PF01389 OmpA-like transmembrane domain SD28_RS00180 PF00691 OmpA family SD28_RS00190 PF07676 WD40-like Beta Propeller Repeat SD28_RS00200 PF02472 Biopolymer transport protein ExbD/TolR SD28_RS00205 PF01618 MotA/TolQ/ExbB proton channel family SD28_RS00215 PF01066 CDP-alcohol phosphatidyltransferase SD28_RS00220 PF07736 Chorismate mutase type I SD28_RS00225 PF02401 LytB protein SD28_RS00245 PF00691 OmpA family SD28_RS00245 PF01389 OmpA-like transmembrane domain SD28_RS00250 PF17782 DprA winged helix domain SD28_RS00250 PF02481 DNA recombination-mediator protein A SD28_RS00260 PF08241 Methyltransferase domain SD28_RS00270 PF13359 DDE superfamily endonuclease SD28_RS00270 PF13613 Helix-turn-helix of DDE superfamily endonuclease SD28_RS00275 PF13359 DDE superfamily endonuclease SD28_RS00275 PF13613 Helix-turn-helix of DDE superfamily endonuclease SD28_RS00295 PF13847 Methyltransferase domain SD28_RS00295 PF17827 PrmC N-terminal domain SD28_RS00300 PF00472 RF-1 domain SD28_RS00300 PF03462 PCRF domain SD28_RS00305 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SD28_RS00305 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SD28_RS00305 PF01488 Shikimate / quinate 5-dehydrogenase SD28_RS00315 PF13360 PQQ-like domain SD28_RS00320 PF07690 Major Facilitator Superfamily SD28_RS00325 PF00204 DNA gyrase B SD28_RS00325 PF00986 DNA gyrase B subunit, carboxyl terminus SD28_RS00325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD28_RS00325 PF01751 Toprim domain SD28_RS00335 PF01510 N-acetylmuramoyl-L-alanine amidase SD28_RS00345 PF00448 SRP54-type protein, GTPase domain SD28_RS00345 PF02881 SRP54-type protein, helical bundle domain SD28_RS00355 PF00009 Elongation factor Tu GTP binding domain SD28_RS00355 PF03144 Elongation factor Tu domain 2 SD28_RS00355 PF16658 Class II release factor RF3, C-terminal domain SD28_RS00360 PF02223 Thymidylate kinase SD28_RS00365 PF07670 Nucleoside recognition SD28_RS00365 PF01773 Na+ dependent nucleoside transporter N-terminus SD28_RS00365 PF07662 Na+ dependent nucleoside transporter C-terminus SD28_RS00370 PF01791 DeoC/LacD family aldolase SD28_RS00375 PF01676 Metalloenzyme superfamily SD28_RS00380 PF03309 Type III pantothenate kinase SD28_RS00385 PF00476 DNA polymerase family A SD28_RS00385 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SD28_RS00385 PF01367 5'-3' exonuclease, C-terminal SAM fold SD28_RS00385 PF01612 3'-5' exonuclease SD28_RS00390 PF06594 Haemolysin-type calcium binding protein related domain SD28_RS00390 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) SD28_RS00410 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SD28_RS00415 PF00005 ABC transporter SD28_RS00415 PF00664 ABC transporter transmembrane region SD28_RS00420 PF12627 Probable RNA and SrmB- binding site of polymerase A SD28_RS00420 PF01743 Poly A polymerase head domain SD28_RS00430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SD28_RS00435 PF00873 AcrB/AcrD/AcrF family SD28_RS00455 PF00892 EamA-like transporter family SD28_RS00480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD28_RS00480 PF00512 His Kinase A (phospho-acceptor) domain SD28_RS00480 PF08521 Two-component sensor kinase N-terminal SD28_RS00485 PF01370 NAD dependent epimerase/dehydratase family SD28_RS00485 PF08338 Domain of unknown function (DUF1731) SD28_RS00490 PF01654 Cytochrome bd terminal oxidase subunit I SD28_RS00495 PF02322 Cytochrome bd terminal oxidase subunit II SD28_RS00500 PF00437 Type II/IV secretion system protein SD28_RS00505 PF00694 Aconitase C-terminal domain SD28_RS00505 PF00330 Aconitase family (aconitate hydratase) SD28_RS00520 PF04055 Radical SAM superfamily SD28_RS00520 PF06969 HemN C-terminal domain SD28_RS00525 PF00860 Permease family SD28_RS00535 PF00293 NUDIX domain SD28_RS00560 PF17191 RecG wedge domain SD28_RS00560 PF00271 Helicase conserved C-terminal domain SD28_RS00560 PF00270 DEAD/DEAH box helicase SD28_RS00570 PF00830 Ribosomal L28 family SD28_RS00575 PF00471 Ribosomal protein L33 SD28_RS00580 PF05209 Septum formation inhibitor MinC, N-terminal domain SD28_RS00580 PF03775 Septum formation inhibitor MinC, C-terminal domain SD28_RS00585 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SD28_RS00590 PF03776 Septum formation topological specificity factor MinE SD28_RS00595 PF00005 ABC transporter SD28_RS00600 PF02405 Permease MlaE SD28_RS00605 PF02470 MlaD protein SD28_RS00615 PF03951 Glutamine synthetase, beta-Grasp domain SD28_RS00615 PF00120 Glutamine synthetase, catalytic domain SD28_RS00620 PF04960 Glutaminase SD28_RS00630 PF08212 Lipocalin-like domain SD28_RS00675 PF00749 tRNA synthetases class I (E and Q), catalytic domain SD28_RS00685 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SD28_RS00690 PF02874 ATP synthase alpha/beta family, beta-barrel domain SD28_RS00690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SD28_RS00695 PF00231 ATP synthase SD28_RS00700 PF02874 ATP synthase alpha/beta family, beta-barrel domain SD28_RS00700 PF00306 ATP synthase alpha/beta chain, C terminal domain SD28_RS00700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SD28_RS00705 PF00213 ATP synthase delta (OSCP) subunit SD28_RS00710 PF00430 ATP synthase B/B' CF(0) SD28_RS00715 PF00137 ATP synthase subunit C SD28_RS00720 PF00119 ATP synthase A chain SD28_RS00735 PF00849 RNA pseudouridylate synthase SD28_RS00735 PF01479 S4 domain SD28_RS00740 PF03969 AFG1-like ATPase SD28_RS00750 PF03129 Anticodon binding domain SD28_RS00750 PF13393 Histidyl-tRNA synthetase SD28_RS00755 PF02033 Ribosome-binding factor A SD28_RS00760 PF11987 Translation-initiation factor 2 SD28_RS00760 PF04760 Translation initiation factor IF-2, N-terminal region SD28_RS00760 PF00009 Elongation factor Tu GTP binding domain SD28_RS00765 PF08529 NusA N-terminal domain SD28_RS00765 PF13184 NusA-like KH domain SD28_RS00770 PF02576 RimP N-terminal domain SD28_RS00770 PF17384 RimP C-terminal SH3 domain SD28_RS00780 PF01208 Uroporphyrinogen decarboxylase (URO-D) SD28_RS00785 PF01078 Magnesium chelatase, subunit ChlI SD28_RS00785 PF13335 Magnesium chelatase, subunit ChlI C-terminal SD28_RS00790 PF04380 Membrane fusogenic activity SD28_RS00800 PF01040 UbiA prenyltransferase family SD28_RS00805 PF03626 Prokaryotic Cytochrome C oxidase subunit IV SD28_RS00810 PF00510 Cytochrome c oxidase subunit III SD28_RS00815 PF00115 Cytochrome C and Quinol oxidase polypeptide I SD28_RS00820 PF06481 COX Aromatic Rich Motif SD28_RS00820 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SD28_RS00830 PF03840 Preprotein translocase SecG subunit SD28_RS00835 PF00121 Triosephosphate isomerase SD28_RS00840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SD28_RS00840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SD28_RS00840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SD28_RS00840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SD28_RS00845 PF00156 Phosphoribosyl transferase domain SD28_RS00850 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SD28_RS00850 PF02817 e3 binding domain SD28_RS00850 PF00364 Biotin-requiring enzyme SD28_RS00855 PF16078 2-oxoglutarate dehydrogenase N-terminus SD28_RS00855 PF00676 Dehydrogenase E1 component SD28_RS00855 PF16870 2-oxoglutarate dehydrogenase C-terminal SD28_RS00855 PF02779 Transketolase, pyrimidine binding domain SD28_RS00860 PF13085 2Fe-2S iron-sulfur cluster binding domain SD28_RS00865 PF00890 FAD binding domain SD28_RS00865 PF02910 Fumarate reductase flavoprotein C-term SD28_RS00870 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SD28_RS00875 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SD28_RS00880 PF00285 Citrate synthase, C-terminal domain SD28_RS00885 PF07690 Major Facilitator Superfamily SD28_RS00890 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SD28_RS00890 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SD28_RS00895 PF00462 Glutaredoxin SD28_RS00905 PF00152 tRNA synthetases class II (D, K and N) SD28_RS00905 PF01336 OB-fold nucleic acid binding domain SD28_RS00910 PF03462 PCRF domain SD28_RS00910 PF00472 RF-1 domain SD28_RS00915 PF00881 Nitroreductase family SD28_RS00935 PF01384 Phosphate transporter family SD28_RS00945 PF02626 Carboxyltransferase domain, subdomain A and B SD28_RS00950 PF03746 LamB/YcsF family SD28_RS00960 PF07690 Major Facilitator Superfamily SD28_RS00965 PF00582 Universal stress protein family SD28_RS00970 PF03144 Elongation factor Tu domain 2 SD28_RS00970 PF00009 Elongation factor Tu GTP binding domain SD28_RS00970 PF00679 Elongation factor G C-terminus SD28_RS00970 PF06421 GTP-binding protein LepA C-terminus SD28_RS00985 PF01327 Polypeptide deformylase SD28_RS00990 PF00885 6,7-dimethyl-8-ribityllumazine synthase SD28_RS00995 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SD28_RS00995 PF00925 GTP cyclohydrolase II SD28_RS01000 PF00677 Lumazine binding domain SD28_RS01005 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SD28_RS01005 PF01872 RibD C-terminal domain SD28_RS01015 PF08501 Shikimate dehydrogenase substrate binding domain SD28_RS01015 PF01488 Shikimate / quinate 5-dehydrogenase SD28_RS01015 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SD28_RS01020 PF01225 Mur ligase family, catalytic domain SD28_RS01020 PF02875 Mur ligase family, glutamate ligase domain SD28_RS01020 PF08245 Mur ligase middle domain SD28_RS01025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SD28_RS01045 PF01515 Phosphate acetyl/butaryl transferase SD28_RS01045 PF07085 DRTGG domain SD28_RS01050 PF00871 Acetokinase family SD28_RS01055 PF00436 Single-strand binding protein family SD28_RS01060 PF02631 RecX family SD28_RS01065 PF00154 recA bacterial DNA recombination protein SD28_RS01070 PF02556 Preprotein translocase subunit SecB SD28_RS01075 PF00581 Rhodanese-like domain SD28_RS01085 PF01343 Peptidase family S49 SD28_RS01085 PF06965 Na+/H+ antiporter 1 SD28_RS01135 PF00218 Indole-3-glycerol phosphate synthase SD28_RS01135 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SD28_RS01140 PF01979 Amidohydrolase family SD28_RS01145 PF13520 Amino acid permease SD28_RS01150 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SD28_RS01155 PF01180 Dihydroorotate dehydrogenase SD28_RS01190 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath SD28_RS01235 PF02153 Prephenate dehydrogenase SD28_RS01235 PF01817 Chorismate mutase type II SD28_RS01240 PF02580 D-Tyr-tRNA(Tyr) deacylase SD28_RS01255 PF00037 4Fe-4S binding domain SD28_RS01255 PF11953 Domain of unknown function (DUF3470) SD28_RS01270 PF03372 Endonuclease/Exonuclease/phosphatase family SD28_RS01275 PF06965 Na+/H+ antiporter 1 SD28_RS01280 PF00083 Sugar (and other) transporter SD28_RS01280 PF08946 Osmosensory transporter coiled coil SD28_RS01290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SD28_RS01290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SD28_RS01295 PF12848 ABC transporter SD28_RS01295 PF00005 ABC transporter SD28_RS01305 PF00591 Glycosyl transferase family, a/b domain SD28_RS01305 PF02885 Glycosyl transferase family, helical bundle domain SD28_RS01310 PF00117 Glutamine amidotransferase class-I SD28_RS01315 PF00425 chorismate binding enzyme SD28_RS01315 PF04715 Anthranilate synthase component I, N terminal region SD28_RS01330 PF10150 Ribonuclease E/G family SD28_RS01330 PF00575 S1 RNA binding domain SD28_RS01335 PF00308 Bacterial dnaA protein SD28_RS01335 PF08299 Bacterial dnaA protein helix-turn-helix SD28_RS01335 PF11638 DnaA N-terminal domain SD28_RS01340 PF00712 DNA polymerase III beta subunit, N-terminal domain SD28_RS01340 PF02768 DNA polymerase III beta subunit, C-terminal domain SD28_RS01340 PF02767 DNA polymerase III beta subunit, central domain SD28_RS01355 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SD28_RS01355 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SD28_RS01360 PF02142 MGS-like domain SD28_RS01360 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SD28_RS01360 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SD28_RS01365 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SD28_RS01365 PF00117 Glutamine amidotransferase class-I SD28_RS01375 PF00657 GDSL-like Lipase/Acylhydrolase SD28_RS01375 PF06767 Sif protein SD28_RS01380 PF00773 RNB domain SD28_RS01385 PF02230 Phospholipase/Carboxylesterase SD28_RS01390 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SD28_RS01390 PF03900 Porphobilinogen deaminase, C-terminal domain SD28_RS01395 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SD28_RS01410 PF00005 ABC transporter SD28_RS01425 PF00132 Bacterial transferase hexapeptide (six repeats) SD28_RS01430 PF03550 Outer membrane lipoprotein LolB SD28_RS01435 PF08544 GHMP kinases C terminal SD28_RS01435 PF00288 GHMP kinases N terminal domain SD28_RS01450 PF02325 YGGT family SD28_RS01455 PF02594 Uncharacterised ACR, YggU family COG1872 SD28_RS01465 PF08443 RimK-like ATP-grasp domain SD28_RS01465 PF18030 RimK PreATP-grasp domain SD28_RS01470 PF03772 Competence protein SD28_RS01470 PF13567 Domain of unknown function (DUF4131) SD28_RS01470 PF00753 Metallo-beta-lactamase superfamily SD28_RS01485 PF00654 Voltage gated chloride channel SD28_RS01505 PF13520 Amino acid permease SD28_RS01535 PF03222 Tryptophan/tyrosine permease family SD28_RS01545 PF01926 50S ribosome-binding GTPase SD28_RS01545 PF01018 GTP1/OBG SD28_RS01550 PF13520 Amino acid permease SD28_RS01555 PF00005 ABC transporter SD28_RS01555 PF06472 ABC transporter transmembrane region 2 SD28_RS01560 PF00152 tRNA synthetases class II (D, K and N) SD28_RS01560 PF02938 GAD domain SD28_RS01560 PF01336 OB-fold nucleic acid binding domain SD28_RS01565 PF00686 Starch binding domain SD28_RS01565 PF01373 Glycosyl hydrolase family 14 SD28_RS01575 PF00391 PEP-utilising enzyme, mobile domain SD28_RS01575 PF02896 PEP-utilising enzyme, TIM barrel domain SD28_RS01575 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SD28_RS01580 PF07664 Ferrous iron transport protein B C terminus SD28_RS01580 PF07670 Nucleoside recognition SD28_RS01580 PF17910 FeoB cytosolic helical domain SD28_RS01580 PF02421 Ferrous iron transport protein B SD28_RS01585 PF00929 Exonuclease SD28_RS01590 PF09285 Elongation factor P, C-terminal SD28_RS01590 PF08207 Elongation factor P (EF-P) KOW-like domain SD28_RS01590 PF01132 Elongation factor P (EF-P) OB domain SD28_RS01595 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor SD28_RS01595 PF07963 Prokaryotic N-terminal methylation motif SD28_RS01600 PF03279 Bacterial lipid A biosynthesis acyltransferase SD28_RS01605 PF03279 Bacterial lipid A biosynthesis acyltransferase SD28_RS01610 PF02096 60Kd inner membrane protein SD28_RS01610 PF14849 YidC periplasmic domain SD28_RS01615 PF00825 Ribonuclease P SD28_RS01620 PF00468 Ribosomal protein L34 SD28_RS01625 PF03222 Tryptophan/tyrosine permease family SD28_RS01630 PF02527 rRNA small subunit methyltransferase G SD28_RS01635 PF01168 Alanine racemase, N-terminal domain SD28_RS01645 PF13580 SIS domain SD28_RS01650 PF04355 SmpA / OmlA family SD28_RS01655 PF01649 Ribosomal protein S20 SD28_RS01660 PF00291 Pyridoxal-phosphate dependent enzyme SD28_RS01665 PF00290 Tryptophan synthase alpha chain SD28_RS01675 PF02861 Clp amino terminal domain, pathogenicity island component SD28_RS01675 PF00004 ATPase family associated with various cellular activities (AAA) SD28_RS01675 PF07724 AAA domain (Cdc48 subfamily) SD28_RS01675 PF10431 C-terminal, D2-small domain, of ClpB protein SD28_RS01675 PF17871 AAA lid domain SD28_RS01705 PF01553 Acyltransferase SD28_RS01715 PF01300 Telomere recombination SD28_RS01720 PF00575 S1 RNA binding domain SD28_RS01725 PF14437 MafB19-like deaminase SD28_RS01730 PF07478 D-ala D-ala ligase C-terminus SD28_RS01735 PF03799 Cell division protein FtsQ SD28_RS01735 PF08478 POTRA domain, FtsQ-type SD28_RS01740 PF02491 SHS2 domain inserted in FTSA SD28_RS01745 PF00091 Tubulin/FtsZ family, GTPase domain SD28_RS01745 PF12327 FtsZ family, C-terminal domain SD28_RS01750 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SD28_RS01755 PF12170 DNA polymerase III tau subunit V interacting with alpha SD28_RS01755 PF12169 DNA polymerase III subunits gamma and tau domain III SD28_RS01770 PF03600 Citrate transporter SD28_RS01775 PF07690 Major Facilitator Superfamily SD28_RS01790 PF01136 Peptidase family U32 SD28_RS01790 PF16325 Peptidase family U32 C-terminal domain SD28_RS01800 PF02321 Outer membrane efflux protein SD28_RS01810 PF00156 Phosphoribosyl transferase domain SD28_RS01815 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SD28_RS01815 PF02769 AIR synthase related protein, C-terminal domain SD28_RS01815 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal SD28_RS01820 PF10397 Adenylosuccinate lyase C-terminus SD28_RS01820 PF00206 Lyase SD28_RS01835 PF02686 Glu-tRNAGln amidotransferase C subunit SD28_RS01840 PF01425 Amidase SD28_RS01845 PF02934 GatB/GatE catalytic domain SD28_RS01845 PF02637 GatB domain SD28_RS01855 PF07690 Major Facilitator Superfamily SD28_RS01865 PF06276 Ferric iron reductase FhuF-like transporter SD28_RS01865 PF04183 IucA / IucC family SD28_RS01870 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) SD28_RS01875 PF06276 Ferric iron reductase FhuF-like transporter SD28_RS01875 PF04183 IucA / IucC family SD28_RS01880 PF00282 Pyridoxal-dependent decarboxylase conserved domain SD28_RS01885 PF00202 Aminotransferase class-III SD28_RS01890 PF00696 Amino acid kinase family SD28_RS01890 PF01842 ACT domain SD28_RS01895 PF01475 Ferric uptake regulator family SD28_RS01940 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SD28_RS01945 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system SD28_RS01950 PF01348 Type II intron maturase SD28_RS01950 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SD28_RS01955 PF01348 Type II intron maturase SD28_RS01955 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SD28_RS01965 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SD28_RS01970 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SD28_RS01975 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SD28_RS01980 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SD28_RS01990 PF10531 SLBB domain SD28_RS01990 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SD28_RS01990 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SD28_RS01995 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SD28_RS01995 PF00384 Molybdopterin oxidoreductase SD28_RS01995 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal SD28_RS02000 PF00146 NADH dehydrogenase SD28_RS02005 PF12838 4Fe-4S dicluster domain SD28_RS02010 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SD28_RS02015 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SD28_RS02020 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SD28_RS02020 PF00361 Proton-conducting membrane transporter SD28_RS02025 PF00361 Proton-conducting membrane transporter SD28_RS02025 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus SD28_RS02030 PF00361 Proton-conducting membrane transporter SD28_RS02045 PF00132 Bacterial transferase hexapeptide (six repeats) SD28_RS02045 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SD28_RS02055 PF08543 Phosphomethylpyrimidine kinase SD28_RS02065 PF07726 ATPase family associated with various cellular activities (AAA) SD28_RS02065 PF17863 AAA lid domain SD28_RS02080 PF00092 von Willebrand factor type A domain SD28_RS02080 PF07584 Aerotolerance regulator N-terminal SD28_RS02085 PF07584 Aerotolerance regulator N-terminal SD28_RS02085 PF00092 von Willebrand factor type A domain SD28_RS02115 PF10458 Valyl tRNA synthetase tRNA binding arm SD28_RS02115 PF08264 Anticodon-binding domain of tRNA SD28_RS02115 PF00133 tRNA synthetases class I (I, L, M and V) SD28_RS02130 PF01808 AICARFT/IMPCHase bienzyme SD28_RS02130 PF02142 MGS-like domain SD28_RS02140 PF00709 Adenylosuccinate synthetase SD28_RS02145 PF00156 Phosphoribosyl transferase domain SD28_RS02155 PF01494 FAD binding domain SD28_RS02160 PF00950 ABC 3 transport family SD28_RS02165 PF00005 ABC transporter SD28_RS02165 PF08402 TOBE domain SD28_RS02175 PF07690 Major Facilitator Superfamily SD28_RS02185 PF03358 NADPH-dependent FMN reductase SD28_RS02190 PF03631 Virulence factor BrkB SD28_RS02200 PF00270 DEAD/DEAH box helicase SD28_RS02200 PF17764 3′ DNA-binding domain (3′BD) SD28_RS02200 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SD28_RS02200 PF18074 Primosomal protein N C-terminal domain SD28_RS02200 PF00271 Helicase conserved C-terminal domain SD28_RS02225 PF02322 Cytochrome bd terminal oxidase subunit II SD28_RS02230 PF01654 Cytochrome bd terminal oxidase subunit I SD28_RS02235 PF07690 Major Facilitator Superfamily SD28_RS02240 PF00186 Dihydrofolate reductase SD28_RS02250 PF00318 Ribosomal protein S2 SD28_RS02255 PF00889 Elongation factor TS SD28_RS02260 PF00696 Amino acid kinase family SD28_RS02265 PF01765 Ribosome recycling factor SD28_RS02270 PF01255 Putative undecaprenyl diphosphate synthase SD28_RS02280 PF00692 dUTPase SD28_RS02285 PF01066 CDP-alcohol phosphatidyltransferase SD28_RS02290 PF00164 Ribosomal protein S12/S23 SD28_RS02295 PF00177 Ribosomal protein S7p/S5e SD28_RS02300 PF03764 Elongation factor G, domain IV SD28_RS02300 PF00009 Elongation factor Tu GTP binding domain SD28_RS02300 PF00679 Elongation factor G C-terminus SD28_RS02300 PF14492 Elongation Factor G, domain II SD28_RS02300 PF03144 Elongation factor Tu domain 2 SD28_RS02305 PF00338 Ribosomal protein S10p/S20e SD28_RS02310 PF00297 Ribosomal protein L3 SD28_RS02315 PF00573 Ribosomal protein L4/L1 family SD28_RS02320 PF00276 Ribosomal protein L23 SD28_RS02325 PF03947 Ribosomal Proteins L2, C-terminal domain SD28_RS02325 PF00181 Ribosomal Proteins L2, RNA binding domain SD28_RS02330 PF00203 Ribosomal protein S19 SD28_RS02335 PF00237 Ribosomal protein L22p/L17e SD28_RS02340 PF00189 Ribosomal protein S3, C-terminal domain SD28_RS02340 PF07650 KH domain SD28_RS02345 PF00252 Ribosomal protein L16p/L10e SD28_RS02350 PF00831 Ribosomal L29 protein SD28_RS02355 PF00366 Ribosomal protein S17 SD28_RS02360 PF00238 Ribosomal protein L14p/L23e SD28_RS02365 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SD28_RS02370 PF00281 Ribosomal protein L5 SD28_RS02370 PF00673 ribosomal L5P family C-terminus SD28_RS02375 PF00253 Ribosomal protein S14p/S29e SD28_RS02380 PF00410 Ribosomal protein S8 SD28_RS02385 PF00347 Ribosomal protein L6 SD28_RS02390 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SD28_RS02395 PF03719 Ribosomal protein S5, C-terminal domain SD28_RS02395 PF00333 Ribosomal protein S5, N-terminal domain SD28_RS02400 PF00327 Ribosomal protein L30p/L7e SD28_RS02405 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SD28_RS02410 PF00344 SecY translocase SD28_RS02415 PF00444 Ribosomal protein L36 SD28_RS02420 PF00416 Ribosomal protein S13/S18 SD28_RS02425 PF00411 Ribosomal protein S11 SD28_RS02430 PF01479 S4 domain SD28_RS02430 PF00163 Ribosomal protein S4/S9 N-terminal domain SD28_RS02435 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SD28_RS02435 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SD28_RS02435 PF01000 RNA polymerase Rpb3/RpoA insert domain SD28_RS02440 PF01196 Ribosomal protein L17 SD28_RS02445 PF00183 Hsp90 protein SD28_RS02450 PF06418 CTP synthase N-terminus SD28_RS02450 PF00117 Glutamine amidotransferase class-I SD28_RS02455 PF00334 Nucleoside diphosphate kinase SD28_RS02460 PF01039 Carboxyl transferase domain SD28_RS02460 PF17848 Acetyl-coA carboxylase zinc finger domain SD28_RS02465 PF08245 Mur ligase middle domain SD28_RS02470 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SD28_RS02480 PF03023 Lipid II flippase MurJ SD28_RS02485 PF04262 Glutamate-cysteine ligase SD28_RS02490 PF01197 Ribosomal protein L31 SD28_RS02495 PF00667 FAD binding domain SD28_RS02495 PF00258 Flavodoxin SD28_RS02495 PF00175 Oxidoreductase NAD-binding domain SD28_RS02505 PF01145 SPFH domain / Band 7 family SD28_RS02515 PF00580 UvrD/REP helicase N-terminal domain SD28_RS02515 PF13361 UvrD-like helicase C-terminal domain SD28_RS02525 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SD28_RS02525 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SD28_RS02530 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SD28_RS02530 PF01266 FAD dependent oxidoreductase SD28_RS02535 PF00230 Major intrinsic protein SD28_RS02565 PF00009 Elongation factor Tu GTP binding domain SD28_RS02565 PF03144 Elongation factor Tu domain 2 SD28_RS02565 PF03143 Elongation factor Tu C-terminal domain SD28_RS02575 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SD28_RS02580 PF02357 Transcription termination factor nusG SD28_RS02580 PF00467 KOW motif SD28_RS02585 PF00298 Ribosomal protein L11, RNA binding domain SD28_RS02585 PF03946 Ribosomal protein L11, N-terminal domain SD28_RS02590 PF00687 Ribosomal protein L1p/L10e family SD28_RS02595 PF00466 Ribosomal protein L10 SD28_RS02600 PF16320 Ribosomal protein L7/L12 dimerisation domain SD28_RS02600 PF00542 Ribosomal protein L7/L12 C-terminal domain SD28_RS02605 PF04560 RNA polymerase Rpb2, domain 7 SD28_RS02605 PF00562 RNA polymerase Rpb2, domain 6 SD28_RS02605 PF10385 RNA polymerase beta subunit external 1 domain SD28_RS02605 PF04565 RNA polymerase Rpb2, domain 3 SD28_RS02605 PF04561 RNA polymerase Rpb2, domain 2 SD28_RS02605 PF04563 RNA polymerase beta subunit SD28_RS02610 PF00623 RNA polymerase Rpb1, domain 2 SD28_RS02610 PF04998 RNA polymerase Rpb1, domain 5 SD28_RS02610 PF05000 RNA polymerase Rpb1, domain 4 SD28_RS02610 PF04997 RNA polymerase Rpb1, domain 1 SD28_RS02610 PF04983 RNA polymerase Rpb1, domain 3 SD28_RS02620 PF00814 Glycoprotease family SD28_RS02630 PF02772 S-adenosylmethionine synthetase, central domain SD28_RS02630 PF00438 S-adenosylmethionine synthetase, N-terminal domain SD28_RS02630 PF02773 S-adenosylmethionine synthetase, C-terminal domain SD28_RS02635 PF00886 Ribosomal protein S16 SD28_RS02640 PF05239 PRC-barrel domain SD28_RS02640 PF01782 RimM N-terminal domain SD28_RS02650 PF01245 Ribosomal protein L19 SD28_RS02655 PF00589 Phage integrase family SD28_RS02655 PF02899 Phage integrase, N-terminal SAM-like domain SD28_RS02660 PF14226 non-haem dioxygenase in morphine synthesis N-terminal SD28_RS02660 PF03171 2OG-Fe(II) oxygenase superfamily SD28_RS02665 PF00293 NUDIX domain SD28_RS02690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD28_RS02690 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD28_RS02695 PF09335 SNARE associated Golgi protein SD28_RS02700 PF02018 Carbohydrate binding domain SD28_RS02700 PF00704 Glycosyl hydrolases family 18 SD28_RS02700 PF00041 Fibronectin type III domain SD28_RS02720 PF02386 Cation transport protein SD28_RS02735 PF03548 Outer membrane lipoprotein carrier protein LolA SD28_RS02740 PF13491 4TM region of DNA translocase FtsK/SpoIIIE SD28_RS02740 PF17854 FtsK alpha domain SD28_RS02740 PF01580 FtsK/SpoIIIE family SD28_RS02740 PF09397 Ftsk gamma domain SD28_RS02745 PF01569 PAP2 superfamily SD28_RS02750 PF02774 Semialdehyde dehydrogenase, dimerisation domain SD28_RS02750 PF01118 Semialdehyde dehydrogenase, NAD binding domain SD28_RS02760 PF00324 Amino acid permease SD28_RS02765 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SD28_RS02770 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded SD28_RS02775 PF00474 Sodium:solute symporter family SD28_RS02810 PF01406 tRNA synthetases class I (C) catalytic domain SD28_RS02810 PF09190 DALR domain SD28_RS02815 PF05175 Methyltransferase small domain SD28_RS02830 PF02590 Predicted SPOUT methyltransferase SD28_RS02835 PF03883 Peroxide stress protein YaaA SD28_RS02860 PF01026 TatD related DNase SD28_RS02880 PF01925 Sulfite exporter TauE/SafE SD28_RS02885 PF00005 ABC transporter SD28_RS02890 PF01061 ABC-2 type transporter SD28_RS02895 PF00535 Glycosyl transferase family 2 SD28_RS02900 PF01513 ATP-NAD kinase SD28_RS02905 PF13509 S1 domain SD28_RS02905 PF17783 CvfB-like winged helix domain SD28_RS02910 PF01810 LysE type translocator SD28_RS02915 PF02390 Putative methyltransferase SD28_RS02940 PF11127 Protein of unknown function (DUF2892) SD28_RS02940 PF00581 Rhodanese-like domain SD28_RS02945 PF00753 Metallo-beta-lactamase superfamily SD28_RS02955 PF03692 Putative zinc- or iron-chelating domain SD28_RS02960 PF01029 NusB family SD28_RS02965 PF00795 Carbon-nitrogen hydrolase SD28_RS02970 PF00155 Aminotransferase class I and II SD28_RS02975 PF03129 Anticodon binding domain SD28_RS02975 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SD28_RS02975 PF04073 Aminoacyl-tRNA editing domain SD28_RS03005 PF02657 Fe-S metabolism associated domain SD28_RS03025 PF00753 Metallo-beta-lactamase superfamily SD28_RS03025 PF16123 Hydroxyacylglutathione hydrolase C-terminus SD28_RS03105 PF03120 NAD-dependent DNA ligase OB-fold domain SD28_RS03105 PF01653 NAD-dependent DNA ligase adenylation domain SD28_RS03105 PF12826 Helix-hairpin-helix motif SD28_RS03105 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SD28_RS03105 PF00533 BRCA1 C Terminus (BRCT) domain SD28_RS03115 PF17946 RecC C-terminal domain SD28_RS03130 PF04445 Putative SAM-dependent methyltransferase SD28_RS03135 PF02899 Phage integrase, N-terminal SAM-like domain SD28_RS03135 PF00589 Phage integrase family SD28_RS03140 PF03222 Tryptophan/tyrosine permease family SD28_RS03145 PF02556 Preprotein translocase subunit SecB SD28_RS03150 PF01624 MutS domain I SD28_RS03150 PF05190 MutS family domain IV SD28_RS03150 PF05188 MutS domain II SD28_RS03150 PF05192 MutS domain III SD28_RS03150 PF00488 MutS domain V SD28_RS03155 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SD28_RS03175 PF13580 SIS domain SD28_RS03185 PF00999 Sodium/hydrogen exchanger family SD28_RS03195 PF00579 tRNA synthetases class I (W and Y) SD28_RS03210 PF01121 Dephospho-CoA kinase SD28_RS03220 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SD28_RS03220 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SD28_RS03220 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SD28_RS03220 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SD28_RS03225 PF17831 Pyruvate dehydrogenase E1 component middle domain SD28_RS03225 PF00456 Transketolase, thiamine diphosphate binding domain SD28_RS03230 PF00364 Biotin-requiring enzyme SD28_RS03230 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SD28_RS03230 PF02817 e3 binding domain SD28_RS03235 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD28_RS03235 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD28_RS03265 PF01227 GTP cyclohydrolase I SD28_RS03285 PF07690 Major Facilitator Superfamily SD28_RS03290 PF00155 Aminotransferase class I and II SD28_RS03295 PF00682 HMGL-like SD28_RS03295 PF07836 DmpG-like communication domain SD28_RS03305 PF03737 Aldolase/RraA SD28_RS03305 PF00180 Isocitrate/isopropylmalate dehydrogenase SD28_RS03320 PF07690 Major Facilitator Superfamily SD28_RS03345 PF03167 Uracil DNA glycosylase superfamily SD28_RS03350 PF03989 DNA gyrase C-terminal domain, beta-propeller SD28_RS03350 PF00521 DNA gyrase/topoisomerase IV, subunit A SD28_RS03355 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SD28_RS03355 PF13288 DXP reductoisomerase C-terminal domain SD28_RS03355 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SD28_RS03360 PF01103 Surface antigen SD28_RS03360 PF07244 Surface antigen variable number repeat SD28_RS03370 PF00132 Bacterial transferase hexapeptide (six repeats) SD28_RS03370 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SD28_RS03375 PF07977 FabA-like domain SD28_RS03380 PF00132 Bacterial transferase hexapeptide (six repeats) SD28_RS03380 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SD28_RS03385 PF02684 Lipid-A-disaccharide synthetase SD28_RS03395 PF03932 CutC family SD28_RS03400 PF02629 CoA binding domain SD28_RS03400 PF00549 CoA-ligase SD28_RS03405 PF00549 CoA-ligase SD28_RS03405 PF08442 ATP-grasp domain SD28_RS03415 PF01207 Dihydrouridine synthase (Dus) SD28_RS03425 PF00986 DNA gyrase B subunit, carboxyl terminus SD28_RS03425 PF18053 DNA gyrase B subunit insert domain SD28_RS03425 PF01751 Toprim domain SD28_RS03425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD28_RS03425 PF00204 DNA gyrase B SD28_RS03430 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SD28_RS03430 PF06827 Zinc finger found in FPG and IleRS SD28_RS03430 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SD28_RS03435 PF13193 AMP-binding enzyme C-terminal domain SD28_RS03435 PF00501 AMP-binding enzyme SD28_RS03435 PF01553 Acyltransferase SD28_RS03440 PF01795 MraW methylase family SD28_RS03445 PF04999 Cell division protein FtsL SD28_RS03450 PF00905 Penicillin binding protein transpeptidase domain SD28_RS03450 PF03717 Penicillin-binding Protein dimerisation domain SD28_RS03455 PF00312 Ribosomal protein S15 SD28_RS03460 PF00575 S1 RNA binding domain SD28_RS03460 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SD28_RS03460 PF03725 3' exoribonuclease family, domain 2 SD28_RS03460 PF00013 KH domain SD28_RS03460 PF01138 3' exoribonuclease family, domain 1 SD28_RS03465 PF01521 Iron-sulphur cluster biosynthesis SD28_RS03470 PF00793 DAHP synthetase I family SD28_RS03475 PF00485 Phosphoribulokinase / Uridine kinase family SD28_RS03480 PF01192 RNA polymerase Rpb6 SD28_RS03490 PF05958 tRNA (Uracil-5-)-methyltransferase SD28_RS03495 PF04973 Nicotinamide mononucleotide transporter SD28_RS03500 PF04973 Nicotinamide mononucleotide transporter SD28_RS03510 PF03952 Enolase, N-terminal domain SD28_RS03510 PF00113 Enolase, C-terminal TIM barrel domain SD28_RS03515 PF04977 Septum formation initiator SD28_RS03520 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SD28_RS03525 PF03222 Tryptophan/tyrosine permease family SD28_RS03530 PF08240 Alcohol dehydrogenase GroES-like domain SD28_RS03530 PF00107 Zinc-binding dehydrogenase SD28_RS03535 PF00155 Aminotransferase class I and II SD28_RS03540 PF06483 Chitinase C SD28_RS03540 PF00704 Glycosyl hydrolases family 18 SD28_RS03580 PF01029 NusB family SD28_RS03580 PF01189 16S rRNA methyltransferase RsmB/F SD28_RS03585 PF00459 Inositol monophosphatase family SD28_RS03590 PF03601 Conserved hypothetical protein 698 SD28_RS03610 PF00482 Type II secretion system (T2SS), protein F SD28_RS03615 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SD28_RS03615 PF00437 Type II/IV secretion system protein SD28_RS03620 PF03009 Glycerophosphoryl diester phosphodiesterase family SD28_RS03625 PF18146 Damage-inducible protein CinA KH domain SD28_RS03625 PF00994 Probable molybdopterin binding domain SD28_RS03625 PF02464 Competence-damaged protein SD28_RS03630 PF08443 RimK-like ATP-grasp domain SD28_RS03630 PF02875 Mur ligase family, glutamate ligase domain SD28_RS03630 PF08245 Mur ligase middle domain SD28_RS03635 PF02875 Mur ligase family, glutamate ligase domain SD28_RS03635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SD28_RS03635 PF08245 Mur ligase middle domain SD28_RS03645 PF02542 YgbB family SD28_RS03655 PF03180 NLPA lipoprotein SD28_RS03660 PF09383 NIL domain SD28_RS03660 PF00005 ABC transporter SD28_RS03665 PF02660 Glycerol-3-phosphate acyltransferase SD28_RS03670 PF00082 Subtilase family SD28_RS03670 PF01483 Proprotein convertase P-domain SD28_RS03680 PF01702 Queuine tRNA-ribosyltransferase SD28_RS03705 PF02699 Preprotein translocase subunit SD28_RS03710 PF07549 SecD/SecF GG Motif SD28_RS03710 PF13721 SecD export protein N-terminal TM region SD28_RS03710 PF02355 Protein export membrane protein SD28_RS03715 PF07549 SecD/SecF GG Motif SD28_RS03715 PF02355 Protein export membrane protein SD28_RS03725 PF04545 Sigma-70, region 4 SD28_RS03725 PF04542 Sigma-70 region 2 SD28_RS03725 PF00140 Sigma-70 factor, region 1.2 SD28_RS03730 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SD28_RS03740 PF00075 RNase H SD28_RS03745 PF17763 Glutaminase/Asparaginase C-terminal domain SD28_RS03745 PF00710 Asparaginase, N-terminal SD28_RS03750 PF00484 Carbonic anhydrase SD28_RS03760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SD28_RS03760 PF05698 Bacterial trigger factor protein (TF) C-terminus SD28_RS03760 PF05697 Bacterial trigger factor protein (TF) SD28_RS03765 PF00574 Clp protease SD28_RS03770 PF07724 AAA domain (Cdc48 subfamily) SD28_RS03770 PF10431 C-terminal, D2-small domain, of ClpB protein SD28_RS03770 PF06689 ClpX C4-type zinc finger SD28_RS03775 PF00004 ATPase family associated with various cellular activities (AAA) SD28_RS03775 PF02190 ATP-dependent protease La (LON) substrate-binding domain SD28_RS03775 PF05362 Lon protease (S16) C-terminal proteolytic domain SD28_RS03780 PF00216 Bacterial DNA-binding protein SD28_RS03810 PF17209 Hfq protein SD28_RS03815 PF16360 GTP-binding GTPase Middle Region SD28_RS03815 PF01926 50S ribosome-binding GTPase SD28_RS03815 PF13167 GTP-binding GTPase N-terminal SD28_RS03820 PF01145 SPFH domain / Band 7 family SD28_RS03825 PF01145 SPFH domain / Band 7 family SD28_RS03830 PF01451 Low molecular weight phosphotyrosine protein phosphatase SD28_RS03835 PF01926 50S ribosome-binding GTPase SD28_RS03840 PF02592 Putative vitamin uptake transporter SD28_RS03845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SD28_RS03860 PF03641 Possible lysine decarboxylase SD28_RS03870 PF00571 CBS domain SD28_RS03870 PF01380 SIS domain SD28_RS03875 PF00834 Ribulose-phosphate 3 epimerase family SD28_RS03880 PF00483 Nucleotidyl transferase SD28_RS03880 PF01050 Mannose-6-phosphate isomerase SD28_RS03890 PF00294 pfkB family carbohydrate kinase SD28_RS03895 PF03575 Peptidase family S51 SD28_RS03900 PF01112 Asparaginase SD28_RS03940 PF02600 Disulfide bond formation protein DsbB SD28_RS03945 PF00291 Pyridoxal-phosphate dependent enzyme SD28_RS03955 PF10396 GTP-binding protein TrmE N-terminus SD28_RS03955 PF12631 MnmE helical domain SD28_RS03955 PF01926 50S ribosome-binding GTPase SD28_RS03965 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SD28_RS03975 PF00588 SpoU rRNA Methylase family SD28_RS03980 PF01351 Ribonuclease HII SD28_RS03995 PF00380 Ribosomal protein S9/S16 SD28_RS04000 PF00572 Ribosomal protein L13 SD28_RS04005 PF03275 UDP-galactopyranose mutase SD28_RS04010 PF06725 3D domain SD28_RS04010 PF03562 MltA specific insert domain SD28_RS04015 PF01025 GrpE SD28_RS04020 PF00012 Hsp70 protein SD28_RS04025 PF00226 DnaJ domain SD28_RS04025 PF01556 DnaJ C terminal domain SD28_RS04025 PF00684 DnaJ central domain SD28_RS04030 PF13426 PAS domain SD28_RS04030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD28_RS04030 PF00512 His Kinase A (phospho-acceptor) domain SD28_RS04030 PF00672 HAMP domain SD28_RS04035 PF00155 Aminotransferase class I and II SD28_RS04045 PF02540 NAD synthase SD28_RS04055 PF02321 Outer membrane efflux protein SD28_RS04060 PF13533 Biotin-lipoyl like SD28_RS04065 PF07690 Major Facilitator Superfamily SD28_RS04070 PF00501 AMP-binding enzyme SD28_RS04070 PF13193 AMP-binding enzyme C-terminal domain SD28_RS04075 PF00854 POT family SD28_RS04080 PF00854 POT family SD28_RS04085 PF04452 RNA methyltransferase SD28_RS04105 PF00005 ABC transporter SD28_RS04110 PF02405 Permease MlaE SD28_RS04115 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SD28_RS04120 PF01479 S4 domain SD28_RS04120 PF00849 RNA pseudouridylate synthase SD28_RS04125 PF13525 Outer membrane lipoprotein SD28_RS04170 PF01168 Alanine racemase, N-terminal domain SD28_RS04170 PF00842 Alanine racemase, C-terminal domain SD28_RS04175 PF13520 Amino acid permease SD28_RS04180 PF01842 ACT domain SD28_RS04180 PF01817 Chorismate mutase type II SD28_RS04180 PF00800 Prephenate dehydratase SD28_RS04190 PF03315 Serine dehydratase beta chain SD28_RS04190 PF03313 Serine dehydratase alpha chain SD28_RS04195 PF00266 Aminotransferase class-V SD28_RS04200 PF01521 Iron-sulphur cluster biosynthesis SD28_RS04205 PF01883 Iron-sulfur cluster assembly protein SD28_RS04210 PF01467 Cytidylyltransferase-like SD28_RS04215 PF00037 4Fe-4S binding domain SD28_RS04225 PF03129 Anticodon binding domain SD28_RS04225 PF02824 TGS domain SD28_RS04225 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SD28_RS04225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SD28_RS04230 PF00707 Translation initiation factor IF-3, C-terminal domain SD28_RS04230 PF05198 Translation initiation factor IF-3, N-terminal domain SD28_RS04235 PF01632 Ribosomal protein L35 SD28_RS04240 PF00453 Ribosomal protein L20 SD28_RS04250 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SD28_RS04265 PF01134 Glucose inhibited division protein A SD28_RS04265 PF13932 GidA associated domain SD28_RS04290 PF13737 Transposase DDE domain SD28_RS04295 PF01177 Asp/Glu/Hydantoin racemase SD28_RS04305 PF00271 Helicase conserved C-terminal domain SD28_RS04305 PF17757 UvrB interaction domain SD28_RS04305 PF12344 Ultra-violet resistance protein B SD28_RS04305 PF02151 UvrB/uvrC motif SD28_RS04305 PF04851 Type III restriction enzyme, res subunit SD28_RS04310 PF00929 Exonuclease SD28_RS04310 PF08411 Exonuclease C-terminal SD28_RS04315 PF13737 Transposase DDE domain SD28_RS04335 PF00005 ABC transporter SD28_RS04335 PF12399 Branched-chain amino acid ATP-binding cassette transporter SD28_RS04340 PF01557 Fumarylacetoacetate (FAA) hydrolase family SD28_RS04345 PF01048 Phosphorylase superfamily SD28_RS04350 PF01416 tRNA pseudouridine synthase SD28_RS04355 PF07724 AAA domain (Cdc48 subfamily) SD28_RS04355 PF10431 C-terminal, D2-small domain, of ClpB protein SD28_RS04355 PF00004 ATPase family associated with various cellular activities (AAA) SD28_RS04360 PF00227 Proteasome subunit SD28_RS04370 PF03099 Biotin/lipoate A/B protein ligase family SD28_RS04370 PF10437 Bacterial lipoate protein ligase C-terminus SD28_RS04375 PF01479 S4 domain SD28_RS04375 PF00579 tRNA synthetases class I (W and Y) SD28_RS04390 PF10672 S-adenosylmethionine-dependent methyltransferase SD28_RS04390 PF01170 Putative RNA methylase family UPF0020 SD28_RS04390 PF02926 THUMP domain SD28_RS04400 PF02911 Formyl transferase, C-terminal domain SD28_RS04400 PF00551 Formyl transferase SD28_RS04405 PF02951 Prokaryotic glutathione synthetase, N-terminal domain SD28_RS04405 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain SD28_RS04410 PF00202 Aminotransferase class-III SD28_RS04415 PF07859 alpha/beta hydrolase fold SD28_RS04420 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SD28_RS04420 PF00809 Pterin binding enzyme SD28_RS04430 PF13193 AMP-binding enzyme C-terminal domain SD28_RS04430 PF00501 AMP-binding enzyme SD28_RS04435 PF00425 chorismate binding enzyme SD28_RS04435 PF00117 Glutamine amidotransferase class-I SD28_RS04435 PF04715 Anthranilate synthase component I, N terminal region SD28_RS04440 PF00117 Glutamine amidotransferase class-I SD28_RS04440 PF02885 Glycosyl transferase family, helical bundle domain SD28_RS04440 PF00591 Glycosyl transferase family, a/b domain SD28_RS04450 PF00248 Aldo/keto reductase family SD28_RS04455 PF00929 Exonuclease SD28_RS04470 PF03435 Saccharopine dehydrogenase NADP binding domain SD28_RS04470 PF16653 Saccharopine dehydrogenase C-terminal domain SD28_RS04475 PF00171 Aldehyde dehydrogenase family SD28_RS04485 PF01165 Ribosomal protein S21 SD28_RS04490 PF09424 Yqey-like protein SD28_RS04495 PF01807 CHC2 zinc finger SD28_RS04495 PF08275 DNA primase catalytic core, N-terminal domain SD28_RS04495 PF13662 Toprim domain SD28_RS04495 PF10410 DnaB-helicase binding domain of primase SD28_RS04495 PF08278 DNA primase DnaG DnaB-binding SD28_RS04500 PF04545 Sigma-70, region 4 SD28_RS04500 PF03979 Sigma-70 factor, region 1.1 SD28_RS04500 PF00140 Sigma-70 factor, region 1.2 SD28_RS04500 PF04542 Sigma-70 region 2 SD28_RS04500 PF04539 Sigma-70 region 3 SD28_RS04500 PF04546 Sigma-70, non-essential region SD28_RS04505 PF00464 Serine hydroxymethyltransferase SD28_RS04510 PF04751 Protein of unknown function (DUF615) SD28_RS04515 PF00348 Polyprenyl synthetase SD28_RS04545 PF16916 Dimerisation domain of Zinc Transporter SD28_RS04545 PF01545 Cation efflux family SD28_RS04550 PF00483 Nucleotidyl transferase SD28_RS04555 PF13193 AMP-binding enzyme C-terminal domain SD28_RS04555 PF00501 AMP-binding enzyme SD28_RS04555 PF16177 Acetyl-coenzyme A synthetase N-terminus SD28_RS04560 PF00892 EamA-like transporter family SD28_RS04570 PF01206 Sulfurtransferase TusA SD28_RS04575 PF03966 Trm112p-like protein SD28_RS04580 PF02348 Cytidylyltransferase SD28_RS04595 PF03880 DbpA RNA binding domain SD28_RS04595 PF00270 DEAD/DEAH box helicase SD28_RS04595 PF00271 Helicase conserved C-terminal domain SD28_RS04605 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) SD28_RS04615 PF08264 Anticodon-binding domain of tRNA SD28_RS04615 PF09334 tRNA synthetases class I (M) SD28_RS04615 PF01588 Putative tRNA binding domain SD28_RS04635 PF07690 Major Facilitator Superfamily SD28_RS04640 PF00625 Guanylate kinase SD28_RS04645 PF03099 Biotin/lipoate A/B protein ligase family SD28_RS04645 PF02237 Biotin protein ligase C terminal domain SD28_RS04645 PF08279 HTH domain SD28_RS04655 PF13847 Methyltransferase domain SD28_RS04660 PF00155 Aminotransferase class I and II SD28_RS04665 PF06968 Biotin and Thiamin Synthesis associated domain SD28_RS04665 PF04055 Radical SAM superfamily SD28_RS04670 PF00202 Aminotransferase class-III SD28_RS04675 PF01171 PP-loop family SD28_RS04675 PF09179 TilS substrate binding domain SD28_RS04675 PF11734 TilS substrate C-terminal domain SD28_RS04680 PF01842 ACT domain SD28_RS04680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SD28_RS04680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SD28_RS04685 PF00303 Thymidylate synthase SD28_RS04690 PF01790 Prolipoprotein diacylglyceryl transferase SD28_RS04695 PF00575 S1 RNA binding domain SD28_RS04695 PF10150 Ribonuclease E/G family SD28_RS04695 PF12111 Polyribonucleotide phosphorylase C terminal SD28_RS04700 PF00266 Aminotransferase class-V SD28_RS04710 PF02565 Recombination protein O C terminal SD28_RS04710 PF11967 Recombination protein O N terminal SD28_RS04715 PF09335 SNARE associated Golgi protein SD28_RS04720 PF09335 SNARE associated Golgi protein SD28_RS04730 PF01812 5-formyltetrahydrofolate cyclo-ligase family SD28_RS04735 PF02463 RecF/RecN/SMC N terminal domain SD28_RS04740 PF01026 TatD related DNase SD28_RS04745 PF05746 DALR anticodon binding domain SD28_RS04745 PF02092 Glycyl-tRNA synthetase beta subunit SD28_RS04750 PF07690 Major Facilitator Superfamily SD28_RS04755 PF00570 HRDC domain SD28_RS04755 PF01612 3'-5' exonuclease SD28_RS04760 PF01541 GIY-YIG catalytic domain SD28_RS04760 PF02151 UvrB/uvrC motif SD28_RS04760 PF08459 UvrC Helix-hairpin-helix N-terminal SD28_RS04765 PF02646 RmuC family SD28_RS04770 PF14437 MafB19-like deaminase SD28_RS04775 PF00857 Isochorismatase family SD28_RS04780 PF00999 Sodium/hydrogen exchanger family SD28_RS04785 PF00892 EamA-like transporter family SD28_RS04790 PF01571 Aminomethyltransferase folate-binding domain SD28_RS04795 PF13361 UvrD-like helicase C-terminal domain SD28_RS04795 PF00580 UvrD/REP helicase N-terminal domain SD28_RS04800 PF00083 Sugar (and other) transporter SD28_RS04805 PF00581 Rhodanese-like domain SD28_RS04805 PF17773 UPF0176 acylphosphatase like domain SD28_RS04815 PF00206 Lyase SD28_RS04815 PF10415 Fumarase C C-terminus SD28_RS04820 PF01740 STAS domain SD28_RS04820 PF00916 Sulfate permease family SD28_RS04835 PF03099 Biotin/lipoate A/B protein ligase family SD28_RS04840 PF04359 Protein of unknown function (DUF493) SD28_RS04845 PF07943 Penicillin-binding protein 5, C-terminal domain SD28_RS04845 PF00768 D-alanyl-D-alanine carboxypeptidase SD28_RS04850 PF00719 Inorganic pyrophosphatase SD28_RS04855 PF13742 OB-fold nucleic acid binding domain SD28_RS04855 PF02601 Exonuclease VII, large subunit SD28_RS04865 PF00854 POT family SD28_RS04875 PF01171 PP-loop family SD28_RS04880 PF01668 SmpB protein SD28_RS04885 PF03364 Polyketide cyclase / dehydrase and lipid transport SD28_RS04890 PF03658 RnfH family Ubiquitin SD28_RS04900 PF01266 FAD dependent oxidoreductase SD28_RS04900 PF05430 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS04910 PF00679 Elongation factor G C-terminus SD28_RS04910 PF00009 Elongation factor Tu GTP binding domain SD28_RS04910 PF03144 Elongation factor Tu domain 2 SD28_RS04915 PF00793 DAHP synthetase I family SD28_RS04920 PF02978 Signal peptide binding domain SD28_RS04920 PF02881 SRP54-type protein, helical bundle domain SD28_RS04920 PF00448 SRP54-type protein, GTPase domain SD28_RS04930 PF01925 Sulfite exporter TauE/SafE SD28_RS04935 PF01176 Translation initiation factor 1A / IF-1 SD28_RS04950 PF12848 ABC transporter SD28_RS04950 PF00005 ABC transporter SD28_RS04955 PF00588 SpoU rRNA Methylase family SD28_RS04955 PF08032 RNA 2'-O ribose methyltransferase substrate binding SD28_RS04960 PF00011 Hsp20/alpha crystallin family SD28_RS04965 PF00478 IMP dehydrogenase / GMP reductase domain SD28_RS04965 PF00571 CBS domain SD28_RS04980 PF01526 Tn3 transposase DDE domain SD28_RS04980 PF13700 Domain of unknown function (DUF4158) SD28_RS04985 PF00239 Resolvase, N terminal domain SD28_RS04985 PF02796 Helix-turn-helix domain of resolvase SD28_RS04990 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region SD28_RS04990 PF01243 Pyridoxamine 5'-phosphate oxidase SD28_RS05005 PF01625 Peptide methionine sulfoxide reductase SD28_RS05010 PF07690 Major Facilitator Superfamily SD28_RS05040 PF08331 Domain of unknown function (DUF1730) SD28_RS05055 PF13361 UvrD-like helicase C-terminal domain SD28_RS05055 PF00580 UvrD/REP helicase N-terminal domain SD28_RS05065 PF00462 Glutaredoxin SD28_RS05065 PF08534 Redoxin SD28_RS05070 PF00462 Glutaredoxin SD28_RS05075 PF03477 ATP cone domain SD28_RS05075 PF02867 Ribonucleotide reductase, barrel domain SD28_RS05075 PF00317 Ribonucleotide reductase, all-alpha domain SD28_RS05080 PF00056 lactate/malate dehydrogenase, NAD binding domain SD28_RS05080 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SD28_RS05090 PF03232 Ubiquinone biosynthesis protein COQ7 SD28_RS05095 PF00899 ThiF family SD28_RS05100 PF00578 AhpC/TSA family SD28_RS05100 PF10417 C-terminal domain of 1-Cys peroxiredoxin SD28_RS05110 PF08274 PhnA Zinc-Ribbon SD28_RS05110 PF03831 PhnA domain SD28_RS05115 PF01227 GTP cyclohydrolase I SD28_RS05120 PF00270 DEAD/DEAH box helicase SD28_RS05120 PF00271 Helicase conserved C-terminal domain SD28_RS05135 PF00388 Phosphatidylinositol-specific phospholipase C, X domain SD28_RS05140 PF00933 Glycosyl hydrolase family 3 N terminal domain SD28_RS05140 PF01915 Glycosyl hydrolase family 3 C-terminal domain SD28_RS05150 PF06314 Acetoacetate decarboxylase (ADC) SD28_RS05160 PF00962 Adenosine/AMP deaminase SD28_RS05170 PF02540 NAD synthase SD28_RS05170 PF00117 Glutamine amidotransferase class-I SD28_RS05170 PF00958 GMP synthase C terminal domain SD28_RS05175 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SD28_RS05175 PF02779 Transketolase, pyrimidine binding domain SD28_RS05175 PF02780 Transketolase, C-terminal domain SD28_RS05185 PF05496 Holliday junction DNA helicase RuvB P-loop domain SD28_RS05185 PF05491 RuvB C-terminal winged helix domain SD28_RS05185 PF17864 RuvB AAA lid domain SD28_RS05205 PF00083 Sugar (and other) transporter SD28_RS05210 PF02614 Glucuronate isomerase SD28_RS05215 PF01081 KDPG and KHG aldolase SD28_RS05220 PF00294 pfkB family carbohydrate kinase SD28_RS05225 PF03786 D-mannonate dehydratase (UxuA) SD28_RS05230 PF08125 Mannitol dehydrogenase C-terminal domain SD28_RS05230 PF01232 Mannitol dehydrogenase Rossmann domain SD28_RS05245 PF00854 POT family SD28_RS05250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD28_RS05250 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD28_RS05255 PF03372 Endonuclease/Exonuclease/phosphatase family SD28_RS05260 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SD28_RS05260 PF01409 tRNA synthetases class II core domain (F) SD28_RS05265 PF13358 DDE superfamily endonuclease SD28_RS05285 PF03483 B3/4 domain SD28_RS05285 PF03484 tRNA synthetase B5 domain SD28_RS05285 PF03147 Ferredoxin-fold anticodon binding domain SD28_RS05285 PF01588 Putative tRNA binding domain SD28_RS05285 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SD28_RS05290 PF13396 Phospholipase_D-nuclease N-terminal SD28_RS05290 PF13091 PLD-like domain SD28_RS05295 PF10609 NUBPL iron-transfer P-loop NTPase SD28_RS05300 PF00692 dUTPase SD28_RS05305 PF00924 Mechanosensitive ion channel SD28_RS05315 PF08264 Anticodon-binding domain of tRNA SD28_RS05315 PF13603 Leucyl-tRNA synthetase, Domain 2 SD28_RS05315 PF00133 tRNA synthetases class I (I, L, M and V) SD28_RS05320 PF03652 Holliday junction resolvase SD28_RS05325 PF02622 Uncharacterized ACR, COG1678 SD28_RS05330 PF00293 NUDIX domain SD28_RS05345 PF00085 Thioredoxin SD28_RS05355 PF01458 Uncharacterized protein family (UPF0051) SD28_RS05360 PF00005 ABC transporter SD28_RS05365 PF01458 Uncharacterized protein family (UPF0051) SD28_RS05370 PF02082 Transcriptional regulator SD28_RS05375 PF02254 TrkA-N domain SD28_RS05375 PF02080 TrkA-C domain SD28_RS05380 PF13520 Amino acid permease SD28_RS05390 PF00923 Transaldolase/Fructose-6-phosphate aldolase SD28_RS05395 PF00883 Cytosol aminopeptidase family, catalytic domain SD28_RS05395 PF12404 Peptidase SD28_RS05405 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SD28_RS05405 PF02272 DHHA1 domain SD28_RS05405 PF01411 tRNA synthetases class II (A) SD28_RS05425 PF03853 YjeF-related protein N-terminus SD28_RS05425 PF01256 Carbohydrate kinase SD28_RS05430 PF00255 Glutathione peroxidase SD28_RS05435 PF00800 Prephenate dehydratase SD28_RS05435 PF01817 Chorismate mutase type II SD28_RS05455 PF00762 Ferrochelatase SD28_RS05460 PF03441 FAD binding domain of DNA photolyase SD28_RS05460 PF00875 DNA photolyase SD28_RS05465 PF02441 Flavoprotein SD28_RS05465 PF04127 DNA / pantothenate metabolism flavoprotein SD28_RS05470 PF07690 Major Facilitator Superfamily SD28_RS05475 PF13520 Amino acid permease SD28_RS05480 PF18327 Proline utilization A proline dehydrogenase N-terminal domain SD28_RS05480 PF00171 Aldehyde dehydrogenase family SD28_RS05480 PF01619 Proline dehydrogenase SD28_RS05480 PF14850 DNA-binding domain of Proline dehydrogenase SD28_RS05485 PF03937 Flavinator of succinate dehydrogenase SD28_RS05495 PF01761 3-dehydroquinate synthase SD28_RS05500 PF01202 Shikimate kinase SD28_RS05505 PF11741 AMIN domain SD28_RS05505 PF07660 Secretin and TonB N terminus short domain SD28_RS05505 PF03958 Bacterial type II/III secretion system short domain SD28_RS05505 PF00263 Bacterial type II and III secretion system protein SD28_RS05530 PF05191 Adenylate kinase, active site lid SD28_RS05535 PF02913 FAD linked oxidases, C-terminal domain SD28_RS05535 PF01565 FAD binding domain SD28_RS05550 PF07650 KH domain SD28_RS05550 PF01926 50S ribosome-binding GTPase SD28_RS05555 PF00155 Aminotransferase class I and II SD28_RS05560 PF00814 Glycoprotease family SD28_RS05565 PF01979 Amidohydrolase family SD28_RS05570 PF01926 50S ribosome-binding GTPase SD28_RS05580 PF00265 Thymidine kinase SD28_RS05590 PF01596 O-methyltransferase SD28_RS05595 PF01938 TRAM domain SD28_RS05595 PF04055 Radical SAM superfamily SD28_RS05595 PF00919 Uncharacterized protein family UPF0004 SD28_RS05600 PF02562 PhoH-like protein SD28_RS05605 PF02130 Uncharacterized protein family UPF0054 SD28_RS05610 PF03471 Transporter associated domain SD28_RS05610 PF00571 CBS domain SD28_RS05615 PF00795 Carbon-nitrogen hydrolase SD28_RS05640 PF02547 Queuosine biosynthesis protein SD28_RS05645 PF01494 FAD binding domain SD28_RS05650 PF01494 FAD binding domain SD28_RS05655 PF03695 Uncharacterised protein family (UPF0149) SD28_RS05675 PF01321 Creatinase/Prolidase N-terminal domain SD28_RS05675 PF00557 Metallopeptidase family M24 SD28_RS05680 PF02578 Multi-copper polyphenol oxidoreductase laccase SD28_RS05685 PF04551 GcpE protein SD28_RS05690 PF01784 NIF3 (NGG1p interacting factor 3) SD28_RS05710 PF00083 Sugar (and other) transporter SD28_RS05715 PF01380 SIS domain SD28_RS05720 PF00375 Sodium:dicarboxylate symporter family SD28_RS05725 PF02423 Ornithine cyclodeaminase/mu-crystallin family SD28_RS05730 PF01595 Cyclin M transmembrane N-terminal domain SD28_RS05730 PF00571 CBS domain SD28_RS05730 PF03471 Transporter associated domain SD28_RS05735 PF01386 Ribosomal L25p family SD28_RS05740 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SD28_RS05740 PF14572 Phosphoribosyl synthetase-associated domain SD28_RS05760 PF00849 RNA pseudouridylate synthase SD28_RS05760 PF01479 S4 domain SD28_RS05770 PF04055 Radical SAM superfamily SD28_RS05775 PF00772 DnaB-like helicase N terminal domain SD28_RS05775 PF03796 DnaB-like helicase C terminal domain SD28_RS05780 PF03948 Ribosomal protein L9, C-terminal domain SD28_RS05780 PF01281 Ribosomal protein L9, N-terminal domain SD28_RS05785 PF01084 Ribosomal protein S18 SD28_RS05790 PF01250 Ribosomal protein S6 SD28_RS05795 PF01218 Coproporphyrinogen III oxidase SD28_RS05805 PF00266 Aminotransferase class-V SD28_RS05810 PF02224 Cytidylate kinase SD28_RS05820 PF08534 Redoxin SD28_RS05825 PF03466 LysR substrate binding domain SD28_RS05825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SD28_RS05830 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family SD28_RS05845 PF01171 PP-loop family SD28_RS05885 PF00005 ABC transporter SD28_RS05885 PF00664 ABC transporter transmembrane region SD28_RS05890 PF00664 ABC transporter transmembrane region SD28_RS05890 PF00005 ABC transporter SD28_RS05895 PF00375 Sodium:dicarboxylate symporter family SD28_RS05900 PF01042 Endoribonuclease L-PSP SD28_RS05905 PF07690 Major Facilitator Superfamily SD28_RS05915 PF06150 ChaB SD28_RS05930 PF13286 Phosphohydrolase-associated domain SD28_RS05930 PF01966 HD domain SD28_RS05935 PF07690 Major Facilitator Superfamily SD28_RS05945 PF00704 Glycosyl hydrolases family 18 SD28_RS05945 PF06483 Chitinase C SD28_RS05960 PF03702 Anhydro-N-acetylmuramic acid kinase SD28_RS05965 PF00005 ABC transporter SD28_RS05965 PF16326 ABC transporter C-terminal domain SD28_RS05965 PF12848 ABC transporter SD28_RS05970 PF07690 Major Facilitator Superfamily SD28_RS05980 PF08032 RNA 2'-O ribose methyltransferase substrate binding SD28_RS05980 PF00588 SpoU rRNA Methylase family SD28_RS05985 PF08245 Mur ligase middle domain SD28_RS05985 PF02875 Mur ligase family, glutamate ligase domain SD28_RS05985 PF01225 Mur ligase family, catalytic domain SD28_RS05995 PF00156 Phosphoribosyl transferase domain SD28_RS06000 PF00149 Calcineurin-like phosphoesterase SD28_RS06005 PF01225 Mur ligase family, catalytic domain SD28_RS06005 PF02875 Mur ligase family, glutamate ligase domain SD28_RS06005 PF08245 Mur ligase middle domain SD28_RS06015 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SD28_RS06015 PF00749 tRNA synthetases class I (E and Q), catalytic domain SD28_RS06020 PF01293 Phosphoenolpyruvate carboxykinase SD28_RS06025 PF00109 Beta-ketoacyl synthase, N-terminal domain SD28_RS06025 PF02801 Beta-ketoacyl synthase, C-terminal domain SD28_RS06030 PF00550 Phosphopantetheine attachment site SD28_RS06040 PF00698 Acyl transferase domain SD28_RS06045 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SD28_RS06045 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SD28_RS06050 PF02504 Fatty acid synthesis protein SD28_RS06055 PF01783 Ribosomal L32p protein family SD28_RS06065 PF02779 Transketolase, pyrimidine binding domain SD28_RS06065 PF02780 Transketolase, C-terminal domain SD28_RS06065 PF00456 Transketolase, thiamine diphosphate binding domain SD28_RS06070 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SD28_RS06070 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SD28_RS06075 PF00162 Phosphoglycerate kinase SD28_RS06080 PF00224 Pyruvate kinase, barrel domain SD28_RS06080 PF02887 Pyruvate kinase, alpha/beta domain SD28_RS06085 PF01116 Fructose-bisphosphate aldolase class-II SD28_RS06105 PF08402 TOBE domain SD28_RS06105 PF00005 ABC transporter SD28_RS06110 PF00528 Binding-protein-dependent transport system inner membrane component SD28_RS06115 PF00528 Binding-protein-dependent transport system inner membrane component SD28_RS06130 PF01016 Ribosomal L27 protein SD28_RS06135 PF00829 Ribosomal prokaryotic L21 protein SD28_RS06140 PF07516 SecA Wing and Scaffold domain SD28_RS06140 PF01043 SecA preprotein cross-linking domain SD28_RS06140 PF07517 SecA DEAD-like domain SD28_RS06140 PF02810 SEC-C motif SD28_RS06150 PF01048 Phosphorylase superfamily SD28_RS06160 PF01434 Peptidase family M41 SD28_RS06160 PF06480 FtsH Extracellular SD28_RS06160 PF17862 AAA+ lid domain SD28_RS06160 PF00004 ATPase family associated with various cellular activities (AAA) SD28_RS06165 PF17755 UvrA DNA-binding domain SD28_RS06165 PF17760 UvrA interaction domain SD28_RS06170 PF03449 Transcription elongation factor, N-terminal SD28_RS06170 PF01272 Transcription elongation factor, GreA/GreB, C-term SD28_RS06180 PF00342 Phosphoglucose isomerase SD28_RS06190 PF00571 CBS domain SD28_RS06190 PF00478 IMP dehydrogenase / GMP reductase domain SD28_RS06195 PF02789 Cytosol aminopeptidase family, N-terminal domain SD28_RS06195 PF00883 Cytosol aminopeptidase family, catalytic domain SD28_RS06200 PF03739 Lipopolysaccharide export system permease LptF/LptG SD28_RS06205 PF03739 Lipopolysaccharide export system permease LptF/LptG SD28_RS06210 PF00675 Insulinase (Peptidase family M16) SD28_RS06210 PF05193 Peptidase M16 inactive domain SD28_RS06225 PF03458 UPF0126 domain SD28_RS06230 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) SD28_RS06235 PF01048 Phosphorylase superfamily SD28_RS06240 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SD28_RS06245 PF00313 'Cold-shock' DNA-binding domain SD28_RS06255 PF02913 FAD linked oxidases, C-terminal domain SD28_RS06255 PF01565 FAD binding domain SD28_RS06255 PF13183 4Fe-4S dicluster domain SD28_RS06260 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SD28_RS06260 PF01676 Metalloenzyme superfamily SD28_RS06265 PF02403 Seryl-tRNA synthetase N-terminal domain SD28_RS06265 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SD28_RS06270 PF02463 RecF/RecN/SMC N terminal domain SD28_RS06280 PF00155 Aminotransferase class I and II SD28_RS06285 PF00480 ROK family SD28_RS06290 PF02696 Uncharacterized ACR, YdiU/UPF0061 family SD28_RS06300 PF02245 Methylpurine-DNA glycosylase (MPG) SD28_RS06305 PF00301 Rubredoxin SD28_RS06310 PF00291 Pyridoxal-phosphate dependent enzyme SD28_RS06315 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family SD28_RS06320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD28_RS06320 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD28_RS06325 PF01478 Type IV leader peptidase family SD28_RS06325 PF06750 Bacterial Peptidase A24 N-terminal domain SD28_RS06340 PF01195 Peptidyl-tRNA hydrolase SD28_RS06345 PF01926 50S ribosome-binding GTPase SD28_RS06345 PF06071 Protein of unknown function (DUF933) SD28_RS06350 PF01225 Mur ligase family, catalytic domain SD28_RS06350 PF02875 Mur ligase family, glutamate ligase domain SD28_RS06350 PF08245 Mur ligase middle domain SD28_RS06355 PF02091 Glycyl-tRNA synthetase alpha subunit SD28_RS06360 PF02347 Glycine cleavage system P-protein SD28_RS06365 PF02347 Glycine cleavage system P-protein SD28_RS06370 PF01597 Glycine cleavage H-protein SD28_RS06375 PF08669 Glycine cleavage T-protein C-terminal barrel domain SD28_RS06375 PF01571 Aminomethyltransferase folate-binding domain SD28_RS06380 PF01276 Orn/Lys/Arg decarboxylase, major domain SD28_RS06380 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SD28_RS06380 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SD28_RS06390 PF00005 ABC transporter SD28_RS06395 PF02687 FtsX-like permease family SD28_RS06395 PF12704 MacB-like periplasmic core domain SD28_RS06420 PF01336 OB-fold nucleic acid binding domain SD28_RS06420 PF02811 PHP domain SD28_RS06420 PF14579 Helix-hairpin-helix motif SD28_RS06420 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SD28_RS06420 PF07733 Bacterial DNA polymerase III alpha NTPase domain SD28_RS06430 PF00497 Bacterial extracellular solute-binding proteins, family 3 SD28_RS06430 PF01464 Transglycosylase SLT domain SD28_RS06435 PF01053 Cys/Met metabolism PLP-dependent enzyme SD28_RS06440 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD28_RS06440 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD28_RS06445 PF00521 DNA gyrase/topoisomerase IV, subunit A SD28_RS06445 PF03989 DNA gyrase C-terminal domain, beta-propeller SD28_RS06455 PF00557 Metallopeptidase family M24 SD28_RS06465 PF01597 Glycine cleavage H-protein SD28_RS06470 PF03033 Glycosyltransferase family 28 N-terminal domain SD28_RS06470 PF04101 Glycosyltransferase family 28 C-terminal domain SD28_RS06475 PF02575 YbaB/EbfC DNA-binding family SD28_RS06480 PF02132 RecR protein SD28_RS06480 PF13662 Toprim domain SD28_RS06485 PF00999 Sodium/hydrogen exchanger family SD28_RS06485 PF00582 Universal stress protein family SD28_RS06490 PF13291 ACT domain SD28_RS06490 PF02824 TGS domain SD28_RS06490 PF04607 Region found in RelA / SpoT proteins SD28_RS06500 PF14102 Capsule biosynthesis CapC SD28_RS06505 PF08245 Mur ligase middle domain SD28_RS06515 PF04055 Radical SAM superfamily SD28_RS06520 PF07859 alpha/beta hydrolase fold SD28_RS06525 PF07499 RuvA, C-terminal domain SD28_RS06525 PF01330 RuvA N terminal domain SD28_RS06535 PF02075 Crossover junction endodeoxyribonuclease RuvC SD28_RS06540 PF01709 Transcriptional regulator SD28_RS06550 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family SD28_RS06550 PF04055 Radical SAM superfamily SD28_RS06555 PF00210 Ferritin-like domain SD28_RS06560 PF02559 CarD-like/TRCF domain SD28_RS06560 PF00270 DEAD/DEAH box helicase SD28_RS06560 PF00271 Helicase conserved C-terminal domain SD28_RS06560 PF03461 TRCF domain SD28_RS06560 PF17757 UvrB interaction domain SD28_RS06570 PF17757 UvrB interaction domain SD28_RS06570 PF03461 TRCF domain SD28_RS06570 PF00271 Helicase conserved C-terminal domain SD28_RS06570 PF00270 DEAD/DEAH box helicase SD28_RS06570 PF02559 CarD-like/TRCF domain SD28_RS06575 PF01027 Inhibitor of apoptosis-promoting Bax1 SD28_RS06590 PF00633 Helix-hairpin-helix motif SD28_RS06590 PF10576 Iron-sulfur binding domain of endonuclease III SD28_RS06590 PF00730 HhH-GPD superfamily base excision DNA repair protein SD28_RS06595 PF04060 Putative Fe-S cluster SD28_RS06600 PF13417 Glutathione S-transferase, N-terminal domain SD28_RS06600 PF04399 Glutaredoxin 2, C terminal domain SD28_RS06605 PF00534 Glycosyl transferases group 1 SD28_RS06615 PF01531 Glycosyl transferase family 11 SD28_RS06625 PF00132 Bacterial transferase hexapeptide (six repeats) SD28_RS06630 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SD28_RS06635 PF01370 NAD dependent epimerase/dehydratase family SD28_RS06640 PF16363 GDP-mannose 4,6 dehydratase SD28_RS06675 PF13613 Helix-turn-helix of DDE superfamily endonuclease SD28_RS06675 PF13359 DDE superfamily endonuclease SD28_RS06680 PF13359 DDE superfamily endonuclease SD28_RS06680 PF13613 Helix-turn-helix of DDE superfamily endonuclease SD28_RS06690 PF16363 GDP-mannose 4,6 dehydratase SD28_RS06695 PF01370 NAD dependent epimerase/dehydratase family SD28_RS06700 PF00535 Glycosyl transferase family 2 SD28_RS06715 PF00132 Bacterial transferase hexapeptide (six repeats) SD28_RS06715 PF12464 Maltose acetyltransferase SD28_RS06730 PF03102 NeuB family SD28_RS06730 PF08666 SAF domain SD28_RS06740 PF00202 Aminotransferase class-III SD28_RS06750 PF02348 Cytidylyltransferase SD28_RS06760 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SD28_RS06765 PF02719 Polysaccharide biosynthesis protein SD28_RS06770 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SD28_RS06770 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SD28_RS06785 PF02397 Bacterial sugar transferase SD28_RS06795 PF02719 Polysaccharide biosynthesis protein SD28_RS06800 PF04408 Helicase associated domain (HA2) SD28_RS06800 PF11898 Domain of unknown function (DUF3418) SD28_RS06800 PF00270 DEAD/DEAH box helicase SD28_RS06800 PF00271 Helicase conserved C-terminal domain SD28_RS06800 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold SD28_RS06810 PF03971 Monomeric isocitrate dehydrogenase SD28_RS06815 PF03960 ArsC family SD28_RS06820 PF13193 AMP-binding enzyme C-terminal domain SD28_RS06820 PF00501 AMP-binding enzyme SD28_RS06825 PF02770 Acyl-CoA dehydrogenase, middle domain SD28_RS06825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SD28_RS06825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SD28_RS06825 PF09317 Domain of unknown function (DUF1974) SD28_RS06830 PF00378 Enoyl-CoA hydratase/isomerase SD28_RS06830 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SD28_RS06830 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SD28_RS06835 PF02803 Thiolase, C-terminal domain SD28_RS06835 PF00108 Thiolase, N-terminal domain SD28_RS06850 PF00491 Arginase family SD28_RS06865 PF00072 Response regulator receiver domain SD28_RS06865 PF00486 Transcriptional regulatory protein, C terminal SD28_RS06870 PF18698 Histidine kinase sensor domain SD28_RS06870 PF00512 His Kinase A (phospho-acceptor) domain SD28_RS06870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD28_RS06870 PF00989 PAS fold SD28_RS06870 PF00672 HAMP domain SD28_RS06875 PF01593 Flavin containing amine oxidoreductase SD28_RS06895 PF00106 short chain dehydrogenase SD28_RS06905 PF00575 S1 RNA binding domain SD28_RS06905 PF08461 Ribonuclease R winged-helix domain SD28_RS06905 PF08206 Ribonuclease B OB domain SD28_RS06905 PF17876 Cold shock domain SD28_RS06905 PF00773 RNB domain SD28_RS06910 PF16198 tRNA pseudouridylate synthase B C-terminal domain SD28_RS06910 PF01509 TruB family pseudouridylate synthase (N terminal domain) SD28_RS06915 PF00035 Double-stranded RNA binding motif SD28_RS06915 PF14622 Ribonuclease-III-like SD28_RS06920 PF10502 Signal peptidase, peptidase S26 SD28_RS06925 PF00486 Transcriptional regulatory protein, C terminal SD28_RS06925 PF00072 Response regulator receiver domain SD28_RS06930 PF03807 NADP oxidoreductase coenzyme F420-dependent SD28_RS06930 PF14748 Pyrroline-5-carboxylate reductase dimerisation SD28_RS06935 PF01725 Ham1 family SD28_RS06940 PF00534 Glycosyl transferases group 1 SD28_RS06940 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SD28_RS06945 PF00348 Polyprenyl synthetase SD28_RS06950 PF01066 CDP-alcohol phosphatidyltransferase SD28_RS06955 PF03976 Polyphosphate kinase 2 (PPK2) SD28_RS06970 PF13358 DDE superfamily endonuclease SD28_RS06990 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD28_RS07000 PF01119 DNA mismatch repair protein, C-terminal domain SD28_RS07000 PF08676 MutL C terminal dimerisation domain SD28_RS07010 PF03193 RsgA GTPase SD28_RS07015 PF05746 DALR anticodon binding domain SD28_RS07015 PF00750 tRNA synthetases class I (R) SD28_RS07015 PF03485 Arginyl tRNA synthetase N terminal domain SD28_RS07020 PF04453 LPS transport system D SD28_RS07020 PF03968 OstA-like protein SD28_RS07025 PF09312 SurA N-terminal domain SD28_RS07025 PF00639 PPIC-type PPIASE domain SD28_RS07030 PF00398 Ribosomal RNA adenine dimethylase SD28_RS07035 PF00149 Calcineurin-like phosphoesterase SD28_RS07040 PF01220 Dehydroquinase class II SD28_RS07045 PF00364 Biotin-requiring enzyme SD28_RS07050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SD28_RS07050 PF00289 Biotin carboxylase, N-terminal domain SD28_RS07050 PF02785 Biotin carboxylase C-terminal domain SD28_RS07065 PF00152 tRNA synthetases class II (D, K and N) SD28_RS07075 PF01368 DHH family SD28_RS07075 PF02272 DHHA1 domain SD28_RS07075 PF17768 RecJ OB domain SD28_RS07080 PF01594 AI-2E family transporter SD28_RS07085 PF06594 Haemolysin-type calcium binding protein related domain SD28_RS07085 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) SD28_RS07095 PF04480 Protein of unknown function (DUF559) SD28_RS07120 PF03412 Peptidase C39 family SD28_RS07120 PF00664 ABC transporter transmembrane region SD28_RS07120 PF00005 ABC transporter SD28_RS07130 PF13520 Amino acid permease SD28_RS07135 PF13416 Bacterial extracellular solute-binding protein SD28_RS07150 PF00588 SpoU rRNA Methylase family SD28_RS07155 PF00490 Delta-aminolevulinic acid dehydratase SD28_RS07160 PF01985 CRS1 / YhbY (CRM) domain SD28_RS07165 PF09115 DNA polymerase III, delta subunit, C terminal SD28_RS07170 PF08496 Peptidase family S49 N-terminal SD28_RS07170 PF01343 Peptidase family S49 SD28_RS07175 PF02798 Glutathione S-transferase, N-terminal domain SD28_RS07175 PF00043 Glutathione S-transferase, C-terminal domain SD28_RS07180 PF04358 DsrC like protein SD28_RS07185 PF04362 Bacterial Fe(2+) trafficking SD28_RS07190 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase SD28_RS07195 PF01569 PAP2 superfamily SD28_RS07205 PF01098 Cell cycle protein SD28_RS07210 PF02875 Mur ligase family, glutamate ligase domain SD28_RS07210 PF08245 Mur ligase middle domain SD28_RS07215 PF00953 Glycosyl transferase family 4 SD28_RS07215 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SD28_RS07225 PF00313 'Cold-shock' DNA-binding domain SD28_RS07230 PF01165 Ribosomal protein S21 SD28_RS07240 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath SD28_RS07300 PF01380 SIS domain SD28_RS07305 PF00132 Bacterial transferase hexapeptide (six repeats) SD28_RS07305 PF12804 MobA-like NTP transferase domain SD28_RS07310 PF00293 NUDIX domain SD28_RS07310 PF01467 Cytidylyltransferase-like SD28_RS07320 PF02666 Phosphatidylserine decarboxylase SD28_RS07330 PF13538 UvrD-like helicase C-terminal domain SD28_RS07335 PF00580 UvrD/REP helicase N-terminal domain SD28_RS07335 PF12705 PD-(D/E)XK nuclease superfamily SD28_RS07335 PF13361 UvrD-like helicase C-terminal domain SD28_RS07340 PF02163 Peptidase family M50 SD28_RS07360 PF04607 Region found in RelA / SpoT proteins SD28_RS07360 PF13291 ACT domain SD28_RS07360 PF02824 TGS domain SD28_RS07370 PF03222 Tryptophan/tyrosine permease family SD28_RS07380 PF00226 DnaJ domain SD28_RS07380 PF01556 DnaJ C terminal domain SD28_RS07395 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SD28_RS07395 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SD28_RS07400 PF13520 Amino acid permease SD28_RS07405 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SD28_RS07405 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SD28_RS07420 PF00106 short chain dehydrogenase SD28_RS07425 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD28_RS07435 PF00118 TCP-1/cpn60 chaperonin family SD28_RS07440 PF00166 Chaperonin 10 Kd subunit SD28_RS07460 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SD28_RS07460 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SD28_RS07465 PF00004 ATPase family associated with various cellular activities (AAA) SD28_RS07465 PF12002 MgsA AAA+ ATPase C terminal SD28_RS07465 PF16193 AAA C-terminal domain SD28_RS07470 PF02541 Ppx/GppA phosphatase family SD28_RS07475 PF00085 Thioredoxin SD28_RS07480 PF07498 Rho termination factor, N-terminal domain SD28_RS07480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SD28_RS07480 PF07497 Rho termination factor, RNA-binding domain SD28_RS07520 PF00156 Phosphoribosyl transferase domain SD28_RS07520 PF05139 Erythromycin esterase SD28_RS07525 PF00156 Phosphoribosyl transferase domain SD28_RS07525 PF01738 Dienelactone hydrolase family SD28_RS07535 PF01738 Dienelactone hydrolase family SD28_RS07535 PF00156 Phosphoribosyl transferase domain SD28_RS07540 PF09334 tRNA synthetases class I (M) SD28_RS07540 PF08264 Anticodon-binding domain of tRNA SD28_RS07540 PF01588 Putative tRNA binding domain SD28_RS07550 PF01300 Telomere recombination SD28_RS07555 PF04279 Intracellular septation protein A SD28_RS07565 PF02685 Glucokinase SD28_RS07570 PF01209 ubiE/COQ5 methyltransferase family SD28_RS07580 PF03109 ABC1 family SD28_RS07585 PF01230 HIT domain SD28_RS07590 PF00156 Phosphoribosyl transferase domain SD28_RS07595 PF08241 Methyltransferase domain SD28_RS07605 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SD28_RS07605 PF01565 FAD binding domain SD28_RS07610 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SD28_RS07615 PF01926 50S ribosome-binding GTPase SD28_RS07615 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SD28_RS07640 PF03949 Malic enzyme, NAD binding domain SD28_RS07640 PF00390 Malic enzyme, N-terminal domain SD28_RS07645 PF01687 Riboflavin kinase SD28_RS07645 PF06574 FAD synthetase SD28_RS07650 PF08264 Anticodon-binding domain of tRNA SD28_RS07650 PF00133 tRNA synthetases class I (I, L, M and V) SD28_RS07650 PF06827 Zinc finger found in FPG and IleRS SD28_RS07655 PF01252 Signal peptidase (SPase) II SD28_RS07665 PF01728 FtsJ-like methyltransferase SD28_RS07675 PF02540 NAD synthase SD28_RS07675 PF00958 GMP synthase C terminal domain SD28_RS07675 PF00117 Glutamine amidotransferase class-I SD28_RS07680 PF17762 HTH domain found in ParB protein SD28_RS07680 PF02195 ParB-like nuclease domain SD28_RS07685 PF13614 AAA domain SD28_RS07690 PF13368 Topoisomerase C-terminal repeat SD28_RS07690 PF01751 Toprim domain SD28_RS07690 PF01131 DNA topoisomerase SD28_RS07715 PF04430 Protein of unknown function (DUF498/DUF598) SD28_RS07800 PF13358 DDE superfamily endonuclease