SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 2.2E-14 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 2.2E-14 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 2.2E-14 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 2.2E-14 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 PANTHER PTHR11451 397 565 1.1E-140 T 23-04-2016 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 PANTHER PTHR11451 4 245 1.1E-140 T 23-04-2016 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 564 2.0E-225 T 23-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 Pfam PF03129 Anticodon binding domain 473 565 7.1E-19 T 23-04-2016 IPR004154 Anticodon-binding SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 Gene3D G3DSA:3.90.960.10 254 386 1.4E-27 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 456 6.9E-44 T 23-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 565 39.019 T 23-04-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 SUPERFAMILY SSF55826 250 396 1.7E-23 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 Pfam PF04073 Aminoacyl-tRNA editing domain 258 374 4.5E-24 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 Gene3D G3DSA:3.40.50.800 470 564 6.7E-27 T 23-04-2016 IPR004154 Anticodon-binding SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 PANTHER PTHR11451:SF3 397 565 1.1E-140 T 23-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 PANTHER PTHR11451:SF3 4 245 1.1E-140 T 23-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 Gene3D G3DSA:3.30.930.10 12 234 4.5E-97 T 23-04-2016 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 Gene3D G3DSA:3.30.930.10 387 469 4.5E-97 T 23-04-2016 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 SUPERFAMILY SSF52954 461 565 2.29E-29 T 23-04-2016 IPR004154 Anticodon-binding SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 SUPERFAMILY SSF55681 405 476 8.62E-98 T 23-04-2016 SD28_RS02975 32c6728c82a592f3f7879ecb534b7677 566 SUPERFAMILY SSF55681 10 237 8.62E-98 T 23-04-2016 SD28_RS06135 488d2b5bf9a1eeb4adf2e709400510f7 104 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 102 7.2E-37 T 23-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 SD28_RS06135 488d2b5bf9a1eeb4adf2e709400510f7 104 PANTHER PTHR21349 1 102 2.7E-37 T 23-04-2016 SD28_RS06135 488d2b5bf9a1eeb4adf2e709400510f7 104 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 102 1.0E-37 T 23-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06135 488d2b5bf9a1eeb4adf2e709400510f7 104 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 104 26.11 T 23-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06135 488d2b5bf9a1eeb4adf2e709400510f7 104 ProSitePatterns PS01169 Ribosomal protein L21 signature. 73 95 - T 23-04-2016 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06135 488d2b5bf9a1eeb4adf2e709400510f7 104 SUPERFAMILY SSF141091 1 103 1.83E-35 T 23-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 SD28_RS00260 6ceb91a5a7bad111f226e65be09b634d 231 Pfam PF13489 Methyltransferase domain 48 200 2.3E-23 T 23-04-2016 SD28_RS00260 6ceb91a5a7bad111f226e65be09b634d 231 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 6 231 36.761 T 23-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 SD28_RS00260 6ceb91a5a7bad111f226e65be09b634d 231 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 8 225 6.0E-81 T 23-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 SD28_RS00260 6ceb91a5a7bad111f226e65be09b634d 231 PANTHER PTHR10108 2 226 4.8E-85 T 23-04-2016 SD28_RS00260 6ceb91a5a7bad111f226e65be09b634d 231 Gene3D G3DSA:3.40.50.150 20 215 4.1E-44 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS00260 6ceb91a5a7bad111f226e65be09b634d 231 SUPERFAMILY SSF53335 10 211 2.26E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS00260 6ceb91a5a7bad111f226e65be09b634d 231 PANTHER PTHR10108:SF910 2 226 4.8E-85 T 23-04-2016 SD28_RS06310 7b3526432f018ddbb0449ecad5410e6f 292 Gene3D G3DSA:3.40.50.1100 30 105 2.1E-7 T 23-04-2016 SD28_RS06310 7b3526432f018ddbb0449ecad5410e6f 292 Gene3D G3DSA:3.40.50.1100 124 285 4.3E-12 T 23-04-2016 SD28_RS06310 7b3526432f018ddbb0449ecad5410e6f 292 SUPERFAMILY SSF53686 12 286 1.37E-38 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 SUPERFAMILY SSF88697 7 206 1.44E-30 T 23-04-2016 IPR015947 PUA-like domain SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 PANTHER PTHR10046:SF43 1 772 0.0 T 23-04-2016 SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 SUPERFAMILY SSF52540 320 591 5.35E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 7 205 4.7E-32 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 TIGRFAM TIGR00763 lon: endopeptidase La 9 776 1.2E-277 T 23-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 Hamap MF_01973 Lon protease [lon]. 8 774 67.222 T 23-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 PANTHER PTHR10046 1 772 0.0 T 23-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 575 773 3.2E-89 T 23-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 Gene3D G3DSA:3.30.230.10 596 772 9.5E-74 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 681 689 - T 23-04-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 SMART SM00382 353 496 5.7E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 PIRSF PIRSF001174 1 776 0.0 T 23-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 SMART SM00464 7 207 1.1E-38 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 SUPERFAMILY SSF54211 600 772 4.93E-57 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 357 493 2.4E-19 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 708 727 5.4E-52 T 23-04-2016 SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 678 697 5.4E-52 T 23-04-2016 SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 731 749 5.4E-52 T 23-04-2016 SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 600 616 5.4E-52 T 23-04-2016 SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 361 380 5.4E-52 T 23-04-2016 SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 Gene3D G3DSA:3.40.50.300 316 504 1.6E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03775 8c5b83439e23561f18b2161d9031d81c 776 Gene3D G3DSA:1.10.8.60 505 587 2.2E-30 T 23-04-2016 SD28_RS04090 f20352f44f36bf3c5c74dcc4ec9cbc69 228 PANTHER PTHR38568 4 227 9.6E-76 T 23-04-2016 SD28_RS04090 f20352f44f36bf3c5c74dcc4ec9cbc69 228 Pfam PF04286 Protein of unknown function (DUF445) 37 132 2.6E-12 T 23-04-2016 IPR007383 Protein of unknown function DUF445 SD28_RS04090 f20352f44f36bf3c5c74dcc4ec9cbc69 228 PANTHER PTHR38568:SF2 4 227 9.6E-76 T 23-04-2016 SD28_RS03405 5b118372e37c50e158029e96c876f0d1 387 SUPERFAMILY SSF52210 242 384 1.57E-53 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 SD28_RS03405 5b118372e37c50e158029e96c876f0d1 387 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 387 42.15 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 SD28_RS03405 5b118372e37c50e158029e96c876f0d1 387 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 258 283 - T 23-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 SD28_RS03405 5b118372e37c50e158029e96c876f0d1 387 SUPERFAMILY SSF56059 1 239 1.06E-78 T 23-04-2016 SD28_RS03405 5b118372e37c50e158029e96c876f0d1 387 Gene3D G3DSA:3.30.470.20 95 239 1.2E-55 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS03405 5b118372e37c50e158029e96c876f0d1 387 PANTHER PTHR11815:SF1 1 384 4.2E-220 T 23-04-2016 SD28_RS03405 5b118372e37c50e158029e96c876f0d1 387 PIRSF PIRSF001554 1 387 6.0E-153 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 SD28_RS03405 5b118372e37c50e158029e96c876f0d1 387 PANTHER PTHR11815 1 384 4.2E-220 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 SD28_RS03405 5b118372e37c50e158029e96c876f0d1 387 Pfam PF08442 ATP-grasp domain 2 203 2.6E-79 T 23-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 SD28_RS03405 5b118372e37c50e158029e96c876f0d1 387 Gene3D G3DSA:3.30.1490.20 21 94 1.9E-32 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 SD28_RS03405 5b118372e37c50e158029e96c876f0d1 387 Pfam PF00549 CoA-ligase 263 383 4.4E-26 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 SD28_RS03405 5b118372e37c50e158029e96c876f0d1 387 Gene3D G3DSA:3.40.50.261 243 384 4.0E-66 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 SD28_RS03405 5b118372e37c50e158029e96c876f0d1 387 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 384 1.6E-162 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 Pfam PF13437 HlyD family secretion protein 340 446 9.5E-21 T 23-04-2016 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 353 374 4.8E-48 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 386 410 4.8E-48 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 453 468 4.8E-48 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 115 135 4.8E-48 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 73 96 4.8E-48 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 468 488 4.8E-48 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 410 433 4.8E-48 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 PANTHER PTHR30386:SF8 34 158 2.6E-77 T 23-04-2016 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 PANTHER PTHR30386:SF8 197 489 2.6E-77 T 23-04-2016 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 PANTHER PTHR30386 34 158 2.6E-77 T 23-04-2016 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 PANTHER PTHR30386 197 489 2.6E-77 T 23-04-2016 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 SUPERFAMILY SSF51230 100 143 5.65E-5 T 23-04-2016 IPR011053 Single hybrid motif SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 Gene3D G3DSA:2.40.50.100 338 372 4.2E-16 T 23-04-2016 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 Gene3D G3DSA:2.40.50.100 106 137 4.2E-16 T 23-04-2016 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 64 489 7.3E-109 T 23-04-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 SD28_RS07115 5b86036bf6dd029208ab9106fd8b5d8b 489 Pfam PF13533 Biotin-lipoyl like 106 152 1.1E-8 T 23-04-2016 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 SMART SM00436 108 196 9.3E-49 T 23-04-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 729 764 0.11 T 23-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 593 627 4.9E-16 T 23-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 646 682 1.8E-15 T 23-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 688 726 1.3E-12 T 23-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 PANTHER PTHR11390:SF27 1 759 0.0 T 23-04-2016 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 SUPERFAMILY SSF57783 631 681 4.93E-14 T 23-04-2016 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 Gene3D G3DSA:1.10.460.10 473 577 5.5E-59 T 23-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 Gene3D G3DSA:1.10.460.10 139 186 5.5E-59 T 23-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 Gene3D G3DSA:3.30.65.10 686 721 1.0E-5 T 23-04-2016 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 Gene3D G3DSA:3.30.65.10 592 628 5.9E-13 T 23-04-2016 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 Gene3D G3DSA:3.30.65.10 631 681 1.2E-16 T 23-04-2016 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 SUPERFAMILY SSF56712 3 577 7.32E-185 T 23-04-2016 IPR023405 DNA topoisomerase, type IA, core domain SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 Pfam PF01131 DNA topoisomerase 132 563 3.5E-132 T 23-04-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 Gene3D G3DSA:2.70.20.10 188 322 1.3E-25 T 23-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 Gene3D G3DSA:2.70.20.10 325 472 6.3E-32 T 23-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 288 311 - T 23-04-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 PANTHER PTHR11390 1 759 0.0 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 627 6.7E-235 T 23-04-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 SMART SM00437 251 526 1.3E-119 T 23-04-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 489 503 6.3E-35 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 77 90 6.3E-35 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 166 184 6.3E-35 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 380 396 6.3E-35 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 302 311 6.3E-35 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 704 53.238 T 23-04-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 Gene3D G3DSA:3.40.50.140 3 132 1.1E-41 T 23-04-2016 IPR006171 Toprim domain SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 SUPERFAMILY SSF57783 592 628 4.25E-11 T 23-04-2016 SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 SMART SM00493 3 103 6.7E-31 T 23-04-2016 IPR006171 Toprim domain SD28_RS07690 b4a25d835a16f8b6a021ad3398da3191 767 Pfam PF01751 Toprim domain 5 117 1.8E-27 T 23-04-2016 IPR006171 Toprim domain SD28_RS01135 3cab0ecc88e0fc1196abe1401f06296b 453 PANTHER PTHR22854 1 282 1.1E-123 T 23-04-2016 SD28_RS01135 3cab0ecc88e0fc1196abe1401f06296b 453 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 257 448 5.9E-51 T 23-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 SD28_RS01135 3cab0ecc88e0fc1196abe1401f06296b 453 Gene3D G3DSA:3.20.20.70 259 447 7.0E-60 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS01135 3cab0ecc88e0fc1196abe1401f06296b 453 Gene3D G3DSA:3.20.20.70 1 258 2.2E-96 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS01135 3cab0ecc88e0fc1196abe1401f06296b 453 PANTHER PTHR22854:SF2 1 282 1.1E-123 T 23-04-2016 SD28_RS01135 3cab0ecc88e0fc1196abe1401f06296b 453 SUPERFAMILY SSF51366 12 254 3.18E-78 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 SD28_RS01135 3cab0ecc88e0fc1196abe1401f06296b 453 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 254 33.239 T 23-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 SD28_RS01135 3cab0ecc88e0fc1196abe1401f06296b 453 SUPERFAMILY SSF51366 256 451 1.33E-51 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 SD28_RS01135 3cab0ecc88e0fc1196abe1401f06296b 453 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 255 453 29.382 T 23-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 SD28_RS01135 3cab0ecc88e0fc1196abe1401f06296b 453 Pfam PF00218 Indole-3-glycerol phosphate synthase 5 251 7.8E-91 T 23-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 SD28_RS04595 eb44f739c31d9a296db2e81990d93501 565 Gene3D G3DSA:3.40.50.300 4 215 2.8E-79 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04595 eb44f739c31d9a296db2e81990d93501 565 Pfam PF00270 DEAD/DEAH box helicase 31 199 1.3E-51 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SD28_RS04595 eb44f739c31d9a296db2e81990d93501 565 SMART SM00487 26 226 1.2E-63 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain SD28_RS04595 eb44f739c31d9a296db2e81990d93501 565 Pfam PF03880 DbpA RNA binding domain 492 561 2.3E-20 T 23-04-2016 IPR005580 DbpA, RNA-binding domain SD28_RS04595 eb44f739c31d9a296db2e81990d93501 565 PANTHER PTHR24031:SF261 7 525 3.2E-194 T 23-04-2016 SD28_RS04595 eb44f739c31d9a296db2e81990d93501 565 PANTHER PTHR24031 7 525 3.2E-194 T 23-04-2016 SD28_RS04595 eb44f739c31d9a296db2e81990d93501 565 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 157 165 - T 23-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site SD28_RS04595 eb44f739c31d9a296db2e81990d93501 565 SMART SM00490 262 343 1.7E-33 T 23-04-2016 IPR001650 Helicase, C-terminal SD28_RS04595 eb44f739c31d9a296db2e81990d93501 565 Pfam PF00271 Helicase conserved C-terminal domain 235 343 4.8E-30 T 23-04-2016 IPR001650 Helicase, C-terminal SD28_RS04595 eb44f739c31d9a296db2e81990d93501 565 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 2 564 43.097 T 23-04-2016 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 SD28_RS04595 eb44f739c31d9a296db2e81990d93501 565 Gene3D G3DSA:3.40.50.300 216 377 2.9E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04595 eb44f739c31d9a296db2e81990d93501 565 SUPERFAMILY SSF52540 77 364 6.89E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05045 f5be0afa3bd5a4867db2fee9521bb08e 111 Pfam PF02410 Ribosomal silencing factor during starvation 11 104 1.9E-24 T 23-04-2016 SD28_RS05045 f5be0afa3bd5a4867db2fee9521bb08e 111 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 22.408 T 23-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS SD28_RS05045 f5be0afa3bd5a4867db2fee9521bb08e 111 PANTHER PTHR21043 7 104 2.1E-30 T 23-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS SD28_RS05045 f5be0afa3bd5a4867db2fee9521bb08e 111 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 8 104 4.9E-34 T 23-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS SD28_RS05045 f5be0afa3bd5a4867db2fee9521bb08e 111 Gene3D G3DSA:3.30.460.10 3 105 5.1E-33 T 23-04-2016 SD28_RS05045 f5be0afa3bd5a4867db2fee9521bb08e 111 SUPERFAMILY SSF81301 1 105 3.6E-33 T 23-04-2016 SD28_RS01845 ff0fe199e04f9a37c9d766e17bfed6a9 469 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 1 468 34.407 T 23-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 SD28_RS01845 ff0fe199e04f9a37c9d766e17bfed6a9 469 Pfam PF02637 GatB domain 321 467 4.7E-44 T 23-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 SD28_RS01845 ff0fe199e04f9a37c9d766e17bfed6a9 469 SUPERFAMILY SSF55931 1 291 3.66E-117 T 23-04-2016 SD28_RS01845 ff0fe199e04f9a37c9d766e17bfed6a9 469 Gene3D G3DSA:1.10.10.410 410 468 6.3E-6 T 23-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal SD28_RS01845 ff0fe199e04f9a37c9d766e17bfed6a9 469 SUPERFAMILY SSF89095 320 468 7.85E-26 T 23-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 SD28_RS01845 ff0fe199e04f9a37c9d766e17bfed6a9 469 Pfam PF02934 GatB/GatE catalytic domain 1 284 4.0E-110 T 23-04-2016 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 SD28_RS01845 ff0fe199e04f9a37c9d766e17bfed6a9 469 SMART SM00845 321 467 2.4E-61 T 23-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 SD28_RS01845 ff0fe199e04f9a37c9d766e17bfed6a9 469 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 139 153 - T 23-04-2016 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 SD28_RS01845 ff0fe199e04f9a37c9d766e17bfed6a9 469 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 1 468 4.8E-170 T 23-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 SD28_RS01845 ff0fe199e04f9a37c9d766e17bfed6a9 469 PANTHER PTHR11659:SF0 1 469 4.5E-219 T 23-04-2016 SD28_RS01845 ff0fe199e04f9a37c9d766e17bfed6a9 469 PANTHER PTHR11659 1 469 4.5E-219 T 23-04-2016 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E GO:0016884 SD28_RS02450 2f55d3b08a205b26c34da906bb677474 544 Pfam PF00117 Glutamine amidotransferase class-I 304 538 6.6E-56 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 SD28_RS02450 2f55d3b08a205b26c34da906bb677474 544 Gene3D G3DSA:3.40.50.300 3 287 2.5E-131 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02450 2f55d3b08a205b26c34da906bb677474 544 SUPERFAMILY SSF52540 5 272 5.32E-119 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02450 2f55d3b08a205b26c34da906bb677474 544 TIGRFAM TIGR00337 PyrG: CTP synthase 4 539 6.0E-243 T 23-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 SD28_RS02450 2f55d3b08a205b26c34da906bb677474 544 Gene3D G3DSA:3.40.50.880 291 543 9.0E-96 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS02450 2f55d3b08a205b26c34da906bb677474 544 Hamap MF_01227 CTP synthase [pyrG]. 5 544 50.17 T 23-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 SD28_RS02450 2f55d3b08a205b26c34da906bb677474 544 Pfam PF06418 CTP synthase N-terminus 6 269 4.7E-123 T 23-04-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 SD28_RS02450 2f55d3b08a205b26c34da906bb677474 544 PANTHER PTHR11550 1 542 0.0 T 23-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 SD28_RS02450 2f55d3b08a205b26c34da906bb677474 544 SUPERFAMILY SSF52317 292 542 5.69E-81 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS05360 df3e93e4f1fad252a289d459a74cb13a 247 SUPERFAMILY SSF52540 2 231 1.11E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05360 df3e93e4f1fad252a289d459a74cb13a 247 Pfam PF00005 ABC transporter 18 173 5.5E-21 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS05360 df3e93e4f1fad252a289d459a74cb13a 247 PANTHER PTHR24220 4 247 2.7E-121 T 23-04-2016 SD28_RS05360 df3e93e4f1fad252a289d459a74cb13a 247 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS05360 df3e93e4f1fad252a289d459a74cb13a 247 SMART SM00382 27 230 7.1E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS05360 df3e93e4f1fad252a289d459a74cb13a 247 Gene3D G3DSA:3.40.50.300 2 236 3.2E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05360 df3e93e4f1fad252a289d459a74cb13a 247 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 3 245 1.5E-109 T 23-04-2016 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 SD28_RS05360 df3e93e4f1fad252a289d459a74cb13a 247 PANTHER PTHR24220:SF85 4 247 2.7E-121 T 23-04-2016 SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 PRINTS PR01900 YidC translocation/secretion protein signature 352 368 8.9E-25 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 PRINTS PR01900 YidC translocation/secretion protein signature 500 524 8.9E-25 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 PRINTS PR01900 YidC translocation/secretion protein signature 481 496 8.9E-25 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 6 547 23.433 T 23-04-2016 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 PANTHER PTHR12428:SF14 178 545 2.7E-101 T 23-04-2016 SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 Pfam PF02096 60Kd inner membrane protein 367 545 3.7E-64 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 Pfam PF14849 YidC periplasmic domain 84 356 1.5E-59 T 23-04-2016 IPR028053 Membrane insertase YidC, N-terminal SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 7 364 2.9E-76 T 23-04-2016 IPR028053 Membrane insertase YidC, N-terminal SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 PRINTS PR00701 60kDa inner membrane protein signature 266 281 4.5E-58 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 PRINTS PR00701 60kDa inner membrane protein signature 511 534 4.5E-58 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 PRINTS PR00701 60kDa inner membrane protein signature 171 191 4.5E-58 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 PRINTS PR00701 60kDa inner membrane protein signature 4 25 4.5E-58 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 PRINTS PR00701 60kDa inner membrane protein signature 475 497 4.5E-58 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 PRINTS PR00701 60kDa inner membrane protein signature 428 451 4.5E-58 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 PRINTS PR00701 60kDa inner membrane protein signature 337 357 4.5E-58 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 PANTHER PTHR12428 178 545 2.7E-101 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 SD28_RS01610 3360e1c546c75176ad67402b98b2fe17 553 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 366 545 3.0E-75 T 23-04-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 SMART SM00838 398 486 0.0039 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 176 1.5E-18 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 SUPERFAMILY SSF54980 292 370 2.52E-18 T 23-04-2016 IPR009022 Elongation factor G, III-V domain SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 TIGRFAM TIGR01393 lepA: elongation factor 4 2 593 9.9E-299 T 23-04-2016 IPR006297 Elongation factor 4 GO:0005525 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 Pfam PF06421 GTP-binding protein LepA C-terminus 487 593 1.9E-50 T 23-04-2016 IPR013842 GTP-binding protein LepA, C-terminal SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 Gene3D G3DSA:2.40.30.10 194 289 5.5E-24 T 23-04-2016 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 SUPERFAMILY SSF52540 2 230 3.84E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 PANTHER PTHR23115:SF175 397 594 4.6E-277 T 23-04-2016 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 PANTHER PTHR23115:SF175 2 373 4.6E-277 T 23-04-2016 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 Pfam PF00009 Elongation factor Tu GTP binding domain 2 181 1.9E-52 T 23-04-2016 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 Pfam PF00679 Elongation factor G C-terminus 399 482 9.0E-21 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 Gene3D G3DSA:3.30.70.870 291 369 6.0E-25 T 23-04-2016 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 PANTHER PTHR23115 397 594 4.6E-277 T 23-04-2016 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 PANTHER PTHR23115 2 373 4.6E-277 T 23-04-2016 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 Hamap MF_00071 Elongation factor 4 [lepA]. 1 594 302.141 T 23-04-2016 IPR006297 Elongation factor 4 GO:0005525 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 Gene3D G3DSA:3.30.70.240 401 489 2.4E-21 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 Gene3D G3DSA:3.40.50.300 2 193 1.4E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 Pfam PF03144 Elongation factor Tu domain 2 205 275 4.3E-11 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 SUPERFAMILY SSF54980 399 493 1.15E-24 T 23-04-2016 IPR009022 Elongation factor G, III-V domain SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 PRINTS PR00315 GTP-binding elongation factor signature 90 101 3.2E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 PRINTS PR00315 GTP-binding elongation factor signature 126 135 3.2E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 PRINTS PR00315 GTP-binding elongation factor signature 6 19 3.2E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 PRINTS PR00315 GTP-binding elongation factor signature 49 57 3.2E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 PRINTS PR00315 GTP-binding elongation factor signature 74 84 3.2E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS00970 8b35a942e5a961c32be00dd16754a62c 594 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site SD28_RS04580 d9429a52334559db950b9c84d051f316 250 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 5 242 9.6E-85 T 23-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 SD28_RS04580 d9429a52334559db950b9c84d051f316 250 Gene3D G3DSA:3.90.550.10 3 248 5.2E-76 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS04580 d9429a52334559db950b9c84d051f316 250 SUPERFAMILY SSF53448 3 246 3.15E-56 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS04580 d9429a52334559db950b9c84d051f316 250 Pfam PF02348 Cytidylyltransferase 6 222 2.3E-61 T 23-04-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 SD28_RS04580 d9429a52334559db950b9c84d051f316 250 PANTHER PTHR21485:SF4 3 246 3.1E-100 T 23-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 SD28_RS04580 d9429a52334559db950b9c84d051f316 250 PANTHER PTHR21485 3 246 3.1E-100 T 23-04-2016 SD28_RS04580 d9429a52334559db950b9c84d051f316 250 Hamap MF_00057 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. 2 249 40.17 T 23-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 SD28_RS01580 08c5211ef9fc496d4e3a48f72a0f62c9 748 PANTHER PTHR11649 1 146 9.6E-245 T 23-04-2016 SD28_RS01580 08c5211ef9fc496d4e3a48f72a0f62c9 748 PANTHER PTHR11649 640 707 9.6E-245 T 23-04-2016 SD28_RS01580 08c5211ef9fc496d4e3a48f72a0f62c9 748 PANTHER PTHR11649 254 594 9.6E-245 T 23-04-2016 SD28_RS01580 08c5211ef9fc496d4e3a48f72a0f62c9 748 Gene3D G3DSA:3.40.50.300 3 167 4.1E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01580 08c5211ef9fc496d4e3a48f72a0f62c9 748 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 3 23 4.4E-6 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS01580 08c5211ef9fc496d4e3a48f72a0f62c9 748 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 51 66 4.4E-6 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS01580 08c5211ef9fc496d4e3a48f72a0f62c9 748 Pfam PF02421 Ferrous iron transport protein B 2 157 2.9E-61 T 23-04-2016 IPR011619 Ferrous iron transport protein B, N-terminal GO:0005525|GO:0015093|GO:0015684|GO:0016021 SD28_RS01580 08c5211ef9fc496d4e3a48f72a0f62c9 748 SUPERFAMILY SSF52540 4 175 2.25E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01580 08c5211ef9fc496d4e3a48f72a0f62c9 748 Pfam PF07664 Ferrous iron transport protein B C terminus 447 499 9.5E-18 T 23-04-2016 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 SD28_RS01580 08c5211ef9fc496d4e3a48f72a0f62c9 748 PANTHER PTHR11649:SF37 1 146 9.6E-245 T 23-04-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 SD28_RS01580 08c5211ef9fc496d4e3a48f72a0f62c9 748 PANTHER PTHR11649:SF37 640 707 9.6E-245 T 23-04-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 SD28_RS01580 08c5211ef9fc496d4e3a48f72a0f62c9 748 PANTHER PTHR11649:SF37 254 594 9.6E-245 T 23-04-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 SD28_RS01580 08c5211ef9fc496d4e3a48f72a0f62c9 748 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 7 669 1.4E-184 T 23-04-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 SD28_RS01580 08c5211ef9fc496d4e3a48f72a0f62c9 748 Pfam PF07670 Nucleoside recognition 504 670 2.6E-33 T 23-04-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 SD28_RS01580 08c5211ef9fc496d4e3a48f72a0f62c9 748 Pfam PF07670 Nucleoside recognition 343 431 1.4E-13 T 23-04-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 SD28_RS02145 96e20616d550a3c79351668d97ca8369 177 Pfam PF00156 Phosphoribosyl transferase domain 14 163 4.3E-31 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 SD28_RS02145 96e20616d550a3c79351668d97ca8369 177 PANTHER PTHR22573:SF56 1 177 5.1E-61 T 23-04-2016 SD28_RS02145 96e20616d550a3c79351668d97ca8369 177 PANTHER PTHR22573 1 177 5.1E-61 T 23-04-2016 SD28_RS02145 96e20616d550a3c79351668d97ca8369 177 Gene3D G3DSA:3.40.50.2020 3 177 3.4E-67 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS02145 96e20616d550a3c79351668d97ca8369 177 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 10 176 4.1E-58 T 23-04-2016 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620|UniPathway: UPA00591 SD28_RS02145 96e20616d550a3c79351668d97ca8369 177 SUPERFAMILY SSF53271 3 177 6.42E-46 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS03275 e2ef12536e39953ce46d570ee6c0e7fa 287 SUPERFAMILY SSF103481 44 136 1.44E-5 T 23-04-2016 SD28_RS03275 e2ef12536e39953ce46d570ee6c0e7fa 287 PANTHER PTHR12715 4 287 1.3E-22 T 23-04-2016 SD28_RS03275 e2ef12536e39953ce46d570ee6c0e7fa 287 Pfam PF00892 EamA-like transporter family 12 136 4.4E-8 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 SD28_RS03275 e2ef12536e39953ce46d570ee6c0e7fa 287 Pfam PF00892 EamA-like transporter family 149 279 2.6E-10 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 SD28_RS03275 e2ef12536e39953ce46d570ee6c0e7fa 287 SUPERFAMILY SSF103481 200 285 1.96E-7 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PIRSF PIRSF000350 1 452 6.1E-76 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PANTHER PTHR22912:SF106 2 452 7.6E-214 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 Gene3D G3DSA:3.30.390.30 342 452 6.7E-44 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PANTHER PTHR22912 2 452 7.6E-214 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 SUPERFAMILY SSF51905 6 374 6.66E-55 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 5 452 2.7E-179 T 23-04-2016 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 319 1.9E-57 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 23-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.5E-26 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 1.5E-26 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 1.5E-26 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 286 308 1.5E-26 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 273 1.5E-26 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 Gene3D G3DSA:3.50.50.60 3 138 1.3E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 SUPERFAMILY SSF55424 340 452 3.09E-36 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 Gene3D G3DSA:3.50.50.60 139 330 1.4E-46 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 342 451 6.0E-35 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 427 447 1.8E-62 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 1.8E-62 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 301 308 1.8E-62 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 146 1.8E-62 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 1.8E-62 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 405 420 1.8E-62 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 258 272 1.8E-62 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 338 359 1.8E-62 T 23-04-2016 SD28_RS05250 328dd77465f5d4fdd65b72b90db5a525 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.8E-62 T 23-04-2016 SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 ProSitePatterns PS00636 Nt-dnaJ domain signature. 44 63 - T 23-04-2016 IPR018253 DnaJ domain, conserved site SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 Pfam PF01556 DnaJ C terminal domain 134 285 2.2E-29 T 23-04-2016 IPR002939 Chaperone DnaJ, C-terminal SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 Pfam PF00226 DnaJ domain 3 64 6.5E-26 T 23-04-2016 IPR001623 DnaJ domain SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 SMART SM00271 2 59 4.9E-30 T 23-04-2016 IPR001623 DnaJ domain SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 SUPERFAMILY SSF49493 217 296 1.44E-13 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 SUPERFAMILY SSF46565 2 90 2.49E-32 T 23-04-2016 IPR001623 DnaJ domain SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 Gene3D G3DSA:2.60.260.20 128 211 1.2E-15 T 23-04-2016 SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 Gene3D G3DSA:2.60.260.20 214 285 6.3E-11 T 23-04-2016 SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 Gene3D G3DSA:1.10.287.110 2 88 4.7E-34 T 23-04-2016 IPR001623 DnaJ domain SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 PANTHER PTHR24078 3 301 1.7E-68 T 23-04-2016 SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 PANTHER PTHR24078:SF190 3 301 1.7E-68 T 23-04-2016 SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 SUPERFAMILY SSF49493 128 225 4.19E-16 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 PRINTS PR00625 DnaJ domain signature 39 59 9.8E-26 T 23-04-2016 IPR001623 DnaJ domain SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 PRINTS PR00625 DnaJ domain signature 59 78 9.8E-26 T 23-04-2016 IPR001623 DnaJ domain SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 PRINTS PR00625 DnaJ domain signature 23 38 9.8E-26 T 23-04-2016 IPR001623 DnaJ domain SD28_RS07380 6e0983ad70f68fa06a0cb27d100acdb5 309 PRINTS PR00625 DnaJ domain signature 5 23 9.8E-26 T 23-04-2016 IPR001623 DnaJ domain SD28_RS06390 1f1133e299b18044d52f18b10e8ed995 228 Pfam PF00005 ABC transporter 26 175 3.1E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS06390 1f1133e299b18044d52f18b10e8ed995 228 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS06390 1f1133e299b18044d52f18b10e8ed995 228 SUPERFAMILY SSF52540 6 226 5.58E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06390 1f1133e299b18044d52f18b10e8ed995 228 SMART SM00382 35 227 7.9E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS06390 1f1133e299b18044d52f18b10e8ed995 228 Gene3D G3DSA:3.40.50.300 3 226 4.2E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06390 1f1133e299b18044d52f18b10e8ed995 228 PANTHER PTHR24220:SF111 8 226 1.9E-107 T 23-04-2016 SD28_RS06390 1f1133e299b18044d52f18b10e8ed995 228 PANTHER PTHR24220 8 226 1.9E-107 T 23-04-2016 SD28_RS01295 fae4b380e379771f65689a6cd2715ec4 559 SUPERFAMILY SSF52540 14 248 2.85E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01295 fae4b380e379771f65689a6cd2715ec4 559 SUPERFAMILY SSF52540 305 531 2.71E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01295 fae4b380e379771f65689a6cd2715ec4 559 Pfam PF00005 ABC transporter 343 476 1.0E-23 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS01295 fae4b380e379771f65689a6cd2715ec4 559 Pfam PF00005 ABC transporter 23 194 1.1E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS01295 fae4b380e379771f65689a6cd2715ec4 559 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 4 556 2.2E-294 T 23-04-2016 IPR022374 ABC transporter, ATP-binding protein, ChvD SD28_RS01295 fae4b380e379771f65689a6cd2715ec4 559 Gene3D G3DSA:3.40.50.300 12 107 6.2E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01295 fae4b380e379771f65689a6cd2715ec4 559 Gene3D G3DSA:3.40.50.300 144 291 6.2E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01295 fae4b380e379771f65689a6cd2715ec4 559 PANTHER PTHR19211:SF7 1 556 0.0 T 23-04-2016 SD28_RS01295 fae4b380e379771f65689a6cd2715ec4 559 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS01295 fae4b380e379771f65689a6cd2715ec4 559 Pfam PF12848 ABC transporter 233 306 2.0E-11 T 23-04-2016 IPR032781 ABC-transporter extension domain SD28_RS01295 fae4b380e379771f65689a6cd2715ec4 559 PANTHER PTHR19211 1 556 0.0 T 23-04-2016 SD28_RS01295 fae4b380e379771f65689a6cd2715ec4 559 Gene3D G3DSA:3.40.50.300 324 540 1.1E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01295 fae4b380e379771f65689a6cd2715ec4 559 SMART SM00382 351 531 2.9E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS01295 fae4b380e379771f65689a6cd2715ec4 559 SMART SM00382 32 239 6.0E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS05230 149431b2bd7a545d4f413f1efd3b75d6 488 Gene3D G3DSA:3.40.50.720 8 281 2.5E-94 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05230 149431b2bd7a545d4f413f1efd3b75d6 488 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 23 188 4.4E-31 T 23-04-2016 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 SD28_RS05230 149431b2bd7a545d4f413f1efd3b75d6 488 SUPERFAMILY SSF51735 8 281 2.64E-80 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05230 149431b2bd7a545d4f413f1efd3b75d6 488 PRINTS PR00084 Mannitol dehydrogenase signature 218 231 5.6E-18 T 23-04-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 SD28_RS05230 149431b2bd7a545d4f413f1efd3b75d6 488 PRINTS PR00084 Mannitol dehydrogenase signature 179 192 5.6E-18 T 23-04-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 SD28_RS05230 149431b2bd7a545d4f413f1efd3b75d6 488 PRINTS PR00084 Mannitol dehydrogenase signature 24 34 5.6E-18 T 23-04-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 SD28_RS05230 149431b2bd7a545d4f413f1efd3b75d6 488 PRINTS PR00084 Mannitol dehydrogenase signature 248 263 5.6E-18 T 23-04-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 SD28_RS05230 149431b2bd7a545d4f413f1efd3b75d6 488 SUPERFAMILY SSF48179 283 487 7.14E-50 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 SD28_RS05230 149431b2bd7a545d4f413f1efd3b75d6 488 Gene3D G3DSA:1.10.1040.10 282 487 1.2E-56 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 SD28_RS05230 149431b2bd7a545d4f413f1efd3b75d6 488 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 217 463 3.2E-74 T 23-04-2016 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 SD28_RS05230 149431b2bd7a545d4f413f1efd3b75d6 488 PANTHER PTHR30562:SF6 13 470 4.4E-133 T 23-04-2016 SD28_RS05230 149431b2bd7a545d4f413f1efd3b75d6 488 PANTHER PTHR30562 13 470 4.4E-133 T 23-04-2016 SD28_RS06820 c7deb328aaa99ba767dca9e296382406 561 Gene3D G3DSA:3.30.300.30 460 559 1.6E-30 T 23-04-2016 SD28_RS06820 c7deb328aaa99ba767dca9e296382406 561 PANTHER PTHR24096 17 557 1.5E-140 T 23-04-2016 SD28_RS06820 c7deb328aaa99ba767dca9e296382406 561 SUPERFAMILY SSF56801 14 558 3.4E-131 T 23-04-2016 SD28_RS06820 c7deb328aaa99ba767dca9e296382406 561 Pfam PF00501 AMP-binding enzyme 32 463 8.8E-90 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 SD28_RS06820 c7deb328aaa99ba767dca9e296382406 561 Gene3D G3DSA:2.30.38.10 382 453 9.4E-22 T 23-04-2016 SD28_RS06820 c7deb328aaa99ba767dca9e296382406 561 Gene3D G3DSA:3.40.50.980 186 216 1.2E-35 T 23-04-2016 SD28_RS06820 c7deb328aaa99ba767dca9e296382406 561 Gene3D G3DSA:3.40.50.980 24 153 1.2E-35 T 23-04-2016 SD28_RS06820 c7deb328aaa99ba767dca9e296382406 561 Pfam PF13193 AMP-binding enzyme C-terminal domain 472 547 1.9E-18 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain SD28_RS06820 c7deb328aaa99ba767dca9e296382406 561 Gene3D G3DSA:3.40.50.980 217 381 3.8E-40 T 23-04-2016 SD28_RS06820 c7deb328aaa99ba767dca9e296382406 561 ProSitePatterns PS00455 Putative AMP-binding domain signature. 212 223 - T 23-04-2016 IPR020845 AMP-binding, conserved site SD28_RS03365 3dd5f670f5863d0e5faddbd4c7efcec4 166 SMART SM00935 9 163 2.0E-32 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 SD28_RS03365 3dd5f670f5863d0e5faddbd4c7efcec4 166 PANTHER PTHR35089 3 164 7.1E-22 T 23-04-2016 SD28_RS03365 3dd5f670f5863d0e5faddbd4c7efcec4 166 Pfam PF03938 Outer membrane protein (OmpH-like) 7 161 6.6E-22 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 SD28_RS03365 3dd5f670f5863d0e5faddbd4c7efcec4 166 SUPERFAMILY SSF111384 20 163 5.23E-25 T 23-04-2016 IPR024930 Skp domain SD28_RS03365 3dd5f670f5863d0e5faddbd4c7efcec4 166 Gene3D G3DSA:3.30.910.20 11 78 7.9E-7 T 23-04-2016 SD28_RS03365 3dd5f670f5863d0e5faddbd4c7efcec4 166 Gene3D G3DSA:3.30.910.20 80 163 1.8E-10 T 23-04-2016 SD28_RS06900 c54d8b74a719c8c9f67b8eb44c3e9d67 274 PRINTS PR00075 Fatty acid desaturase family 1 signature 184 205 3.0E-23 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 SD28_RS06900 c54d8b74a719c8c9f67b8eb44c3e9d67 274 PRINTS PR00075 Fatty acid desaturase family 1 signature 89 118 3.0E-23 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 SD28_RS06900 c54d8b74a719c8c9f67b8eb44c3e9d67 274 PRINTS PR00075 Fatty acid desaturase family 1 signature 29 51 3.0E-23 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 SD28_RS06900 c54d8b74a719c8c9f67b8eb44c3e9d67 274 PRINTS PR00075 Fatty acid desaturase family 1 signature 52 72 3.0E-23 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 SD28_RS06900 c54d8b74a719c8c9f67b8eb44c3e9d67 274 PRINTS PR00075 Fatty acid desaturase family 1 signature 227 241 3.0E-23 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 SD28_RS06900 c54d8b74a719c8c9f67b8eb44c3e9d67 274 PANTHER PTHR11351 6 272 8.6E-85 T 23-04-2016 SD28_RS06900 c54d8b74a719c8c9f67b8eb44c3e9d67 274 PANTHER PTHR11351:SF34 6 272 8.6E-85 T 23-04-2016 SD28_RS06900 c54d8b74a719c8c9f67b8eb44c3e9d67 274 Pfam PF00487 Fatty acid desaturase 33 238 2.8E-16 T 23-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 SD28_RS04460 9a87e3ade6e1dee3df447d1840570ae9 158 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 28 153 2.7E-40 T 23-04-2016 IPR003709 Peptidase M15B GO:0006508|GO:0008233 SD28_RS04460 9a87e3ade6e1dee3df447d1840570ae9 158 PANTHER PTHR34385:SF1 23 152 9.5E-40 T 23-04-2016 SD28_RS04460 9a87e3ade6e1dee3df447d1840570ae9 158 Gene3D G3DSA:3.30.1380.10 25 105 1.7E-6 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain SD28_RS04460 9a87e3ade6e1dee3df447d1840570ae9 158 SUPERFAMILY SSF55166 23 155 9.16E-30 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain SD28_RS04460 9a87e3ade6e1dee3df447d1840570ae9 158 PANTHER PTHR34385 23 152 9.5E-40 T 23-04-2016 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 SUPERFAMILY SSF47323 455 581 1.05E-28 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 Pfam PF00750 tRNA synthetases class I (R) 97 444 5.7E-79 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 Gene3D G3DSA:3.30.1360.70 1 101 1.5E-23 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 SUPERFAMILY SSF52374 109 453 5.93E-78 T 23-04-2016 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 13 581 2.9E-129 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 Gene3D G3DSA:1.10.730.10 458 581 1.9E-29 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 86 3.8E-18 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 Gene3D G3DSA:3.40.50.620 112 457 3.3E-91 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 Pfam PF05746 DALR anticodon binding domain 459 581 5.6E-24 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 PANTHER PTHR11956 1 581 1.7E-171 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 122 133 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 SMART SM00836 459 581 4.7E-25 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 SUPERFAMILY SSF55190 25 99 8.37E-18 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 SMART SM01016 1 86 7.0E-19 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 581 23.211 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 PRINTS PR01038 Arginyl-tRNA synthetase signature 114 129 4.4E-23 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 PRINTS PR01038 Arginyl-tRNA synthetase signature 153 166 4.4E-23 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 PRINTS PR01038 Arginyl-tRNA synthetase signature 129 145 4.4E-23 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 SD28_RS07015 9bea6728dc2ce5db9035ae3ef74d7d91 581 PRINTS PR01038 Arginyl-tRNA synthetase signature 309 330 4.4E-23 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 SD28_RS04180 a9bf63393f26df64969ac0150cb22337 281 PANTHER PTHR21022 1 275 1.6E-98 T 23-04-2016 SD28_RS04180 a9bf63393f26df64969ac0150cb22337 281 Gene3D G3DSA:3.40.190.10 2 92 1.5E-24 T 23-04-2016 SD28_RS04180 a9bf63393f26df64969ac0150cb22337 281 PIRSF PIRSF001500 1 280 1.6E-72 T 23-04-2016 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 SD28_RS04180 a9bf63393f26df64969ac0150cb22337 281 Pfam PF00800 Prephenate dehydratase 4 184 6.7E-52 T 23-04-2016 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 SD28_RS04180 a9bf63393f26df64969ac0150cb22337 281 SUPERFAMILY SSF55021 190 276 3.88E-24 T 23-04-2016 SD28_RS04180 a9bf63393f26df64969ac0150cb22337 281 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 225 232 - T 23-04-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 SD28_RS04180 a9bf63393f26df64969ac0150cb22337 281 SUPERFAMILY SSF53850 3 186 1.09E-49 T 23-04-2016 SD28_RS04180 a9bf63393f26df64969ac0150cb22337 281 Pfam PF01842 ACT domain 198 256 5.5E-8 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 SD28_RS04180 a9bf63393f26df64969ac0150cb22337 281 Gene3D G3DSA:3.40.190.10 93 171 1.2E-26 T 23-04-2016 SD28_RS04180 a9bf63393f26df64969ac0150cb22337 281 Gene3D G3DSA:3.30.70.260 194 278 3.2E-30 T 23-04-2016 SD28_RS04070 486c10e1101ba25cb404c3cde1b987dd 563 Gene3D G3DSA:3.40.50.980 224 375 1.8E-40 T 23-04-2016 SD28_RS04070 486c10e1101ba25cb404c3cde1b987dd 563 Pfam PF13193 AMP-binding enzyme C-terminal domain 477 552 4.7E-17 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain SD28_RS04070 486c10e1101ba25cb404c3cde1b987dd 563 Gene3D G3DSA:2.30.38.10 383 458 3.4E-20 T 23-04-2016 SD28_RS04070 486c10e1101ba25cb404c3cde1b987dd 563 ProSitePatterns PS00455 Putative AMP-binding domain signature. 214 225 - T 23-04-2016 IPR020845 AMP-binding, conserved site SD28_RS04070 486c10e1101ba25cb404c3cde1b987dd 563 SUPERFAMILY SSF56801 14 561 2.09E-136 T 23-04-2016 SD28_RS04070 486c10e1101ba25cb404c3cde1b987dd 563 PANTHER PTHR24096 26 561 3.9E-139 T 23-04-2016 SD28_RS04070 486c10e1101ba25cb404c3cde1b987dd 563 Pfam PF00501 AMP-binding enzyme 36 468 3.3E-96 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 SD28_RS04070 486c10e1101ba25cb404c3cde1b987dd 563 Gene3D G3DSA:3.30.300.30 463 560 9.8E-30 T 23-04-2016 SD28_RS04070 486c10e1101ba25cb404c3cde1b987dd 563 Gene3D G3DSA:3.40.50.980 199 223 4.7E-41 T 23-04-2016 SD28_RS04070 486c10e1101ba25cb404c3cde1b987dd 563 Gene3D G3DSA:3.40.50.980 25 140 4.7E-41 T 23-04-2016 SD28_RS02470 f564c8e7cfe0dad0d8e2fca9dd1a4751 135 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 6 131 2.1E-40 T 23-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 SD28_RS02470 f564c8e7cfe0dad0d8e2fca9dd1a4751 135 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 6 134 1.3E-48 T 23-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 SD28_RS02470 f564c8e7cfe0dad0d8e2fca9dd1a4751 135 PANTHER PTHR33540 1 134 7.0E-43 T 23-04-2016 SD28_RS02470 f564c8e7cfe0dad0d8e2fca9dd1a4751 135 SUPERFAMILY SSF52540 19 115 2.1E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02470 f564c8e7cfe0dad0d8e2fca9dd1a4751 135 Gene3D G3DSA:3.40.50.300 4 134 4.2E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07030 814a70bbec913d6051922214170a1319 263 Gene3D G3DSA:1.10.8.100 198 262 2.2E-20 T 23-04-2016 IPR023165 rRNA adenine dimethylase-like SD28_RS07030 814a70bbec913d6051922214170a1319 263 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 5 261 50.529 T 23-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 SD28_RS07030 814a70bbec913d6051922214170a1319 263 SUPERFAMILY SSF53335 3 261 1.39E-75 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS07030 814a70bbec913d6051922214170a1319 263 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 37 64 - T 23-04-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 SD28_RS07030 814a70bbec913d6051922214170a1319 263 PANTHER PTHR11727 1 263 1.4E-74 T 23-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm SD28_RS07030 814a70bbec913d6051922214170a1319 263 SMART SM00650 21 193 3.1E-65 T 23-04-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 SD28_RS07030 814a70bbec913d6051922214170a1319 263 Pfam PF00398 Ribosomal RNA adenine dimethylase 6 261 4.2E-64 T 23-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm SD28_RS07030 814a70bbec913d6051922214170a1319 263 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 6 259 5.8E-84 T 23-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 SD28_RS07030 814a70bbec913d6051922214170a1319 263 Gene3D G3DSA:3.40.50.150 3 193 1.1E-64 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS03305 7315ec55109ad77776fa255f73d0c7c3 742 SMART SM01329 7 362 3.6E-125 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 SD28_RS03305 7315ec55109ad77776fa255f73d0c7c3 742 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 258 277 - T 23-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 SD28_RS03305 7315ec55109ad77776fa255f73d0c7c3 742 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 361 1.8E-76 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 SD28_RS03305 7315ec55109ad77776fa255f73d0c7c3 742 Gene3D G3DSA:3.40.980.10 374 541 3.1E-28 T 23-04-2016 IPR001453 MoaB/Mog domain SD28_RS03305 7315ec55109ad77776fa255f73d0c7c3 742 PANTHER PTHR11835:SF34 163 374 1.8E-112 T 23-04-2016 SD28_RS03305 7315ec55109ad77776fa255f73d0c7c3 742 PANTHER PTHR11835 163 374 1.8E-112 T 23-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 SD28_RS03305 7315ec55109ad77776fa255f73d0c7c3 742 PANTHER PTHR11835 7 143 1.8E-112 T 23-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 SD28_RS03305 7315ec55109ad77776fa255f73d0c7c3 742 PANTHER PTHR11835:SF34 7 143 1.8E-112 T 23-04-2016 SD28_RS03305 7315ec55109ad77776fa255f73d0c7c3 742 SUPERFAMILY SSF53218 374 568 6.28E-30 T 23-04-2016 IPR001453 MoaB/Mog domain SD28_RS03305 7315ec55109ad77776fa255f73d0c7c3 742 Pfam PF00994 Probable molybdopterin binding domain 377 541 6.8E-29 T 23-04-2016 IPR001453 MoaB/Mog domain SD28_RS03305 7315ec55109ad77776fa255f73d0c7c3 742 SMART SM00852 376 543 1.8E-26 T 23-04-2016 IPR001453 MoaB/Mog domain SD28_RS03305 7315ec55109ad77776fa255f73d0c7c3 742 Gene3D G3DSA:3.40.718.10 6 364 4.5E-102 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 SD28_RS03305 7315ec55109ad77776fa255f73d0c7c3 742 SUPERFAMILY SSF53659 6 364 1.56E-100 T 23-04-2016 SD28_RS03770 4537647e4fe936dab1fb559f96bf2f7e 418 Pfam PF07724 AAA domain (Cdc48 subfamily) 105 304 1.7E-49 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 SD28_RS03770 4537647e4fe936dab1fb559f96bf2f7e 418 Gene3D G3DSA:1.10.8.60 309 409 1.9E-34 T 23-04-2016 SD28_RS03770 4537647e4fe936dab1fb559f96bf2f7e 418 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 408 50.402 T 23-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 SD28_RS03770 4537647e4fe936dab1fb559f96bf2f7e 418 PANTHER PTHR11262:SF4 1 410 2.1E-225 T 23-04-2016 SD28_RS03770 4537647e4fe936dab1fb559f96bf2f7e 418 SUPERFAMILY SSF52540 54 392 1.07E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03770 4537647e4fe936dab1fb559f96bf2f7e 418 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 4 404 4.2E-189 T 23-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 SD28_RS03770 4537647e4fe936dab1fb559f96bf2f7e 418 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 310 387 3.9E-13 T 23-04-2016 IPR019489 Clp ATPase, C-terminal SD28_RS03770 4537647e4fe936dab1fb559f96bf2f7e 418 SUPERFAMILY SSF57716 5 39 1.57E-8 T 23-04-2016 SD28_RS03770 4537647e4fe936dab1fb559f96bf2f7e 418 SMART SM00382 105 266 5.3E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS03770 4537647e4fe936dab1fb559f96bf2f7e 418 SMART SM00994 4 43 5.9E-13 T 23-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 SD28_RS03770 4537647e4fe936dab1fb559f96bf2f7e 418 Gene3D G3DSA:3.40.50.300 59 247 2.8E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03770 4537647e4fe936dab1fb559f96bf2f7e 418 Gene3D G3DSA:3.40.50.300 287 304 2.8E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03770 4537647e4fe936dab1fb559f96bf2f7e 418 Pfam PF06689 ClpX C4-type zinc finger 5 40 1.6E-13 T 23-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 SD28_RS03770 4537647e4fe936dab1fb559f96bf2f7e 418 SMART SM01086 310 405 4.5E-25 T 23-04-2016 IPR019489 Clp ATPase, C-terminal SD28_RS03770 4537647e4fe936dab1fb559f96bf2f7e 418 PANTHER PTHR11262 1 410 2.1E-225 T 23-04-2016 SD28_RS05650 de0194392aa0e314defecb560e8b0e83 402 PANTHER PTHR13789:SF214 4 388 5.2E-86 T 23-04-2016 SD28_RS05650 de0194392aa0e314defecb560e8b0e83 402 SUPERFAMILY SSF51905 4 178 2.45E-46 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS05650 de0194392aa0e314defecb560e8b0e83 402 SUPERFAMILY SSF51905 268 380 2.45E-46 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS05650 de0194392aa0e314defecb560e8b0e83 402 Gene3D G3DSA:3.50.50.60 2 168 3.2E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS05650 de0194392aa0e314defecb560e8b0e83 402 Gene3D G3DSA:3.50.50.60 279 309 3.2E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS05650 de0194392aa0e314defecb560e8b0e83 402 PANTHER PTHR13789 4 388 5.2E-86 T 23-04-2016 SD28_RS05650 de0194392aa0e314defecb560e8b0e83 402 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 388 2.1E-92 T 23-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 SD28_RS05650 de0194392aa0e314defecb560e8b0e83 402 Gene3D G3DSA:3.30.9.10 169 231 2.8E-4 T 23-04-2016 SD28_RS05650 de0194392aa0e314defecb560e8b0e83 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 6.6E-17 T 23-04-2016 SD28_RS05650 de0194392aa0e314defecb560e8b0e83 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 6.6E-17 T 23-04-2016 SD28_RS05650 de0194392aa0e314defecb560e8b0e83 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 6.6E-17 T 23-04-2016 SD28_RS05650 de0194392aa0e314defecb560e8b0e83 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 6.6E-17 T 23-04-2016 SD28_RS05650 de0194392aa0e314defecb560e8b0e83 402 Pfam PF01494 FAD binding domain 5 314 1.4E-29 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 SD28_RS04685 a445739e1e3af893e285625319997fa5 274 SUPERFAMILY SSF55831 2 274 2.22E-121 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 SD28_RS04685 a445739e1e3af893e285625319997fa5 274 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 3 86 3.3E-40 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 SD28_RS04685 a445739e1e3af893e285625319997fa5 274 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 85 274 3.8E-79 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 SD28_RS04685 a445739e1e3af893e285625319997fa5 274 PRINTS PR00108 Thymidylate synthase family signature 42 63 4.3E-39 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 SD28_RS04685 a445739e1e3af893e285625319997fa5 274 PRINTS PR00108 Thymidylate synthase family signature 207 224 4.3E-39 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 SD28_RS04685 a445739e1e3af893e285625319997fa5 274 PRINTS PR00108 Thymidylate synthase family signature 169 195 4.3E-39 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 SD28_RS04685 a445739e1e3af893e285625319997fa5 274 PRINTS PR00108 Thymidylate synthase family signature 112 131 4.3E-39 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 SD28_RS04685 a445739e1e3af893e285625319997fa5 274 Pfam PF00303 Thymidylate synthase 3 274 5.8E-115 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 SD28_RS04685 a445739e1e3af893e285625319997fa5 274 PANTHER PTHR11548 1 274 7.9E-174 T 23-04-2016 SD28_RS04685 a445739e1e3af893e285625319997fa5 274 Hamap MF_00008 Thymidylate synthase [thyA]. 1 274 43.456 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 SD28_RS04685 a445739e1e3af893e285625319997fa5 274 Gene3D G3DSA:3.30.572.10 1 274 5.2E-125 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 SD28_RS01810 c77a360ef13d39cfce4425911bdcc842 495 PANTHER PTHR11907 1 478 3.2E-222 T 23-04-2016 SD28_RS01810 c77a360ef13d39cfce4425911bdcc842 495 SUPERFAMILY SSF53271 250 480 7.47E-65 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS01810 c77a360ef13d39cfce4425911bdcc842 495 Pfam PF00156 Phosphoribosyl transferase domain 278 393 1.0E-7 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 SD28_RS01810 c77a360ef13d39cfce4425911bdcc842 495 PANTHER PTHR11907:SF0 1 478 3.2E-222 T 23-04-2016 SD28_RS01810 c77a360ef13d39cfce4425911bdcc842 495 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 464 1.1E-142 T 23-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 SD28_RS01810 c77a360ef13d39cfce4425911bdcc842 495 Gene3D G3DSA:3.40.50.2020 271 442 1.8E-42 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS01810 c77a360ef13d39cfce4425911bdcc842 495 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 466 42.894 T 23-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 SD28_RS01810 c77a360ef13d39cfce4425911bdcc842 495 PIRSF PIRSF000485 1 481 6.3E-154 T 23-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 SD28_RS01810 c77a360ef13d39cfce4425911bdcc842 495 Gene3D G3DSA:3.60.20.10 2 258 2.3E-58 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal SD28_RS01810 c77a360ef13d39cfce4425911bdcc842 495 Pfam PF13522 Glutamine amidotransferase domain 64 208 2.7E-14 T 23-04-2016 SD28_RS01810 c77a360ef13d39cfce4425911bdcc842 495 SUPERFAMILY SSF56235 2 257 6.35E-65 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal SD28_RS01840 1b9155046b104b474cd138fa587c15c8 481 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 8 470 1.7E-167 T 23-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 SD28_RS01840 1b9155046b104b474cd138fa587c15c8 481 Pfam PF01425 Amidase 20 456 4.6E-141 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 SD28_RS01840 1b9155046b104b474cd138fa587c15c8 481 PANTHER PTHR11895:SF7 4 476 1.2E-186 T 23-04-2016 SD28_RS01840 1b9155046b104b474cd138fa587c15c8 481 Gene3D G3DSA:3.90.1300.10 4 471 1.1E-158 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 SD28_RS01840 1b9155046b104b474cd138fa587c15c8 481 PANTHER PTHR11895 4 476 1.2E-186 T 23-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 SD28_RS01840 1b9155046b104b474cd138fa587c15c8 481 SUPERFAMILY SSF75304 5 468 1.96E-139 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 SD28_RS01840 1b9155046b104b474cd138fa587c15c8 481 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 7 470 86.114 T 23-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 SD28_RS01840 1b9155046b104b474cd138fa587c15c8 481 ProSitePatterns PS00571 Amidases signature. 147 178 - T 23-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 SD28_RS04410 61598d7fbbffaf91f8a062acf873e6c3 431 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 238 274 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SD28_RS04410 61598d7fbbffaf91f8a062acf873e6c3 431 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 9 429 3.0E-184 T 23-04-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 SD28_RS04410 61598d7fbbffaf91f8a062acf873e6c3 431 Gene3D G3DSA:3.90.1150.10 7 73 9.6E-38 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS04410 61598d7fbbffaf91f8a062acf873e6c3 431 Gene3D G3DSA:3.90.1150.10 323 430 9.6E-38 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS04410 61598d7fbbffaf91f8a062acf873e6c3 431 PANTHER PTHR11986:SF5 7 430 7.1E-214 T 23-04-2016 SD28_RS04410 61598d7fbbffaf91f8a062acf873e6c3 431 Gene3D G3DSA:3.40.640.10 75 320 1.9E-83 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS04410 61598d7fbbffaf91f8a062acf873e6c3 431 PANTHER PTHR11986 7 430 7.1E-214 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SD28_RS04410 61598d7fbbffaf91f8a062acf873e6c3 431 SUPERFAMILY SSF53383 7 429 2.14E-128 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS04410 61598d7fbbffaf91f8a062acf873e6c3 431 Pfam PF00202 Aminotransferase class-III 34 367 8.9E-78 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SD28_RS04410 61598d7fbbffaf91f8a062acf873e6c3 431 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 6 431 100.502 T 23-04-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 SD28_RS07210 0dad9646ac114bb09b581030bff893c7 415 SUPERFAMILY SSF53244 273 413 6.04E-41 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS07210 0dad9646ac114bb09b581030bff893c7 415 Gene3D G3DSA:3.40.1190.10 85 207 8.9E-31 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS07210 0dad9646ac114bb09b581030bff893c7 415 Pfam PF08245 Mur ligase middle domain 102 208 1.7E-17 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS07210 0dad9646ac114bb09b581030bff893c7 415 Gene3D G3DSA:3.90.190.20 277 409 5.9E-43 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS07210 0dad9646ac114bb09b581030bff893c7 415 Gene3D G3DSA:3.40.1190.10 235 276 8.3E-4 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS07210 0dad9646ac114bb09b581030bff893c7 415 Pfam PF02875 Mur ligase family, glutamate ligase domain 275 347 1.2E-6 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS07210 0dad9646ac114bb09b581030bff893c7 415 PANTHER PTHR23135:SF2 55 415 4.5E-93 T 23-04-2016 SD28_RS07210 0dad9646ac114bb09b581030bff893c7 415 SUPERFAMILY SSF53623 94 271 2.35E-36 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS07210 0dad9646ac114bb09b581030bff893c7 415 PANTHER PTHR23135 55 415 4.5E-93 T 23-04-2016 SD28_RS07210 0dad9646ac114bb09b581030bff893c7 415 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 12 413 27.692 T 23-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS07210 0dad9646ac114bb09b581030bff893c7 415 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 13 410 6.0E-96 T 23-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS01725 280e1e5dd23b84d1333bea51bb9888c9 152 SUPERFAMILY SSF53927 5 151 2.48E-48 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 SD28_RS01725 280e1e5dd23b84d1333bea51bb9888c9 152 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 12 152 42.749 T 23-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 SD28_RS01725 280e1e5dd23b84d1333bea51bb9888c9 152 PANTHER PTHR11079 2 152 4.4E-40 T 23-04-2016 SD28_RS01725 280e1e5dd23b84d1333bea51bb9888c9 152 Gene3D G3DSA:3.40.140.10 5 149 1.5E-51 T 23-04-2016 SD28_RS01725 280e1e5dd23b84d1333bea51bb9888c9 152 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 57 94 - T 23-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 SD28_RS01725 280e1e5dd23b84d1333bea51bb9888c9 152 Pfam PF14437 MafB19-like deaminase 11 150 1.3E-31 T 23-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 Gene3D G3DSA:3.40.50.720 2 144 3.0E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 SUPERFAMILY SSF56327 144 312 7.21E-47 T 23-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 PANTHER PTHR11540 1 311 3.3E-132 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 SUPERFAMILY SSF51735 5 144 8.14E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 311 4.2E-26 T 23-04-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 PRINTS PR00086 L-lactate dehydrogenase signature 141 159 8.8E-29 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 PRINTS PR00086 L-lactate dehydrogenase signature 171 184 8.8E-29 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 PRINTS PR00086 L-lactate dehydrogenase signature 117 137 8.8E-29 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 PRINTS PR00086 L-lactate dehydrogenase signature 5 29 8.8E-29 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 PRINTS PR00086 L-lactate dehydrogenase signature 29 53 8.8E-29 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 5 143 2.3E-42 T 23-04-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 PIRSF PIRSF000102 1 318 6.4E-100 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 3 309 4.1E-115 T 23-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 Gene3D G3DSA:3.90.110.10 145 314 4.0E-53 T 23-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 Hamap MF_00487 Malate dehydrogenase [mdh]. 4 314 37.49 T 23-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 SD28_RS05080 752d6aa39f2b6fa5eff892751ab81c80 319 PANTHER PTHR11540:SF16 1 311 3.3E-132 T 23-04-2016 SD28_RS00635 f80aeb1f60b2e9a0e1ce593294788568 421 PANTHER PTHR35334 1 420 9.0E-93 T 23-04-2016 SD28_RS00635 f80aeb1f60b2e9a0e1ce593294788568 421 Pfam PF03222 Tryptophan/tyrosine permease family 13 388 9.6E-7 T 23-04-2016 IPR018227 Tryptophan/tyrosine permease GO:0003333 SD28_RS05805 1ca263f2c2f56d477484da2557fb6a5b 350 SUPERFAMILY SSF53383 2 347 1.03E-91 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS05805 1ca263f2c2f56d477484da2557fb6a5b 350 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 1 349 37.856 T 23-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 SD28_RS05805 1ca263f2c2f56d477484da2557fb6a5b 350 Gene3D G3DSA:3.40.640.10 15 244 3.9E-79 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS05805 1ca263f2c2f56d477484da2557fb6a5b 350 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 177 196 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site SD28_RS05805 1ca263f2c2f56d477484da2557fb6a5b 350 PANTHER PTHR21152:SF1 3 348 6.8E-129 T 23-04-2016 SD28_RS05805 1ca263f2c2f56d477484da2557fb6a5b 350 Pfam PF00266 Aminotransferase class-V 4 338 4.8E-39 T 23-04-2016 IPR000192 Aminotransferase class V domain SD28_RS05805 1ca263f2c2f56d477484da2557fb6a5b 350 Gene3D G3DSA:3.90.1150.10 250 348 1.5E-37 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS05805 1ca263f2c2f56d477484da2557fb6a5b 350 PANTHER PTHR21152 3 348 6.8E-129 T 23-04-2016 SD28_RS05805 1ca263f2c2f56d477484da2557fb6a5b 350 PIRSF PIRSF000525 1 349 1.3E-129 T 23-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 Gene3D G3DSA:1.10.601.10 100 412 2.1E-84 T 23-04-2016 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 PANTHER PTHR30603:SF0 294 577 2.1E-182 T 23-04-2016 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 PANTHER PTHR30603:SF0 3 140 2.1E-182 T 23-04-2016 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 Pfam PF03979 Sigma-70 factor, region 1.1 8 73 3.5E-13 T 23-04-2016 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 PANTHER PTHR30603 294 577 2.1E-182 T 23-04-2016 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 PANTHER PTHR30603 3 140 2.1E-182 T 23-04-2016 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 Pfam PF04546 Sigma-70, non-essential region 162 310 3.0E-16 T 23-04-2016 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 Pfam PF04539 Sigma-70 region 3 422 498 8.4E-21 T 23-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 SUPERFAMILY SSF88659 416 490 5.23E-16 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 SUPERFAMILY SSF88659 475 575 1.35E-25 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 367 380 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 Pfam PF04542 Sigma-70 region 2 343 412 1.2E-20 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 Pfam PF04545 Sigma-70, region 4 516 566 1.2E-17 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 538 564 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 5 574 34.635 T 23-04-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 PRINTS PR00046 Major sigma-70 factor signature 538 553 1.1E-30 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 PRINTS PR00046 Major sigma-70 factor signature 517 529 1.1E-30 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 PRINTS PR00046 Major sigma-70 factor signature 553 564 1.1E-30 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 PRINTS PR00046 Major sigma-70 factor signature 367 380 1.1E-30 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 PRINTS PR00046 Major sigma-70 factor signature 391 399 1.1E-30 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 339 577 1.2E-112 T 23-04-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 SUPERFAMILY SSF88946 103 410 1.27E-69 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 Pfam PF00140 Sigma-70 factor, region 1.2 86 116 1.2E-8 T 23-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 339 566 1.0E-37 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 Gene3D G3DSA:1.10.10.10 416 466 1.5E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS04500 1a24a4b39f152cbd83fe8c635f60880a 577 Gene3D G3DSA:1.10.10.10 510 577 6.8E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS07230 36007ff12d45c2fd5ceb16e8bfe42bad 66 Pfam PF01165 Ribosomal protein S21 4 56 3.4E-16 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS07230 36007ff12d45c2fd5ceb16e8bfe42bad 66 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 56 3.2E-14 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS07230 36007ff12d45c2fd5ceb16e8bfe42bad 66 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 17.775 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS07230 36007ff12d45c2fd5ceb16e8bfe42bad 66 PANTHER PTHR21109 1 55 4.6E-13 T 23-04-2016 SD28_RS07230 36007ff12d45c2fd5ceb16e8bfe42bad 66 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 2.8E-8 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS07230 36007ff12d45c2fd5ceb16e8bfe42bad 66 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 2.8E-8 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS07230 36007ff12d45c2fd5ceb16e8bfe42bad 66 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 2.8E-8 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS07230 36007ff12d45c2fd5ceb16e8bfe42bad 66 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 2.8E-8 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS07230 36007ff12d45c2fd5ceb16e8bfe42bad 66 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 14 43 9.0E-11 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS01465 b351914037e7f3c4c71bc0d1469512e5 490 Gene3D G3DSA:3.30.470.20 354 455 6.4E-7 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS01465 b351914037e7f3c4c71bc0d1469512e5 490 SUPERFAMILY SSF56059 271 481 2.98E-37 T 23-04-2016 SD28_RS01465 b351914037e7f3c4c71bc0d1469512e5 490 Pfam PF08443 RimK-like ATP-grasp domain 279 456 4.1E-13 T 23-04-2016 IPR013651 ATP-grasp fold, RimK-type SD28_RS01465 b351914037e7f3c4c71bc0d1469512e5 490 PANTHER PTHR11609 157 484 2.0E-105 T 23-04-2016 SD28_RS01465 b351914037e7f3c4c71bc0d1469512e5 490 Gene3D G3DSA:3.30.1490.20 274 353 3.7E-8 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 SD28_RS01465 b351914037e7f3c4c71bc0d1469512e5 490 PANTHER PTHR11609:SF4 157 484 2.0E-105 T 23-04-2016 SD28_RS01465 b351914037e7f3c4c71bc0d1469512e5 490 Pfam PF14401 RimK-like ATPgrasp N-terminal domain 28 171 4.1E-33 T 23-04-2016 IPR025839 RimK-like ATPgrasp N-terminal domain SD28_RS00580 ce80db3a6142dd4bb2bb3664f7b81e23 227 PANTHER PTHR34108 1 227 2.5E-40 T 23-04-2016 SD28_RS00580 ce80db3a6142dd4bb2bb3664f7b81e23 227 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 5 227 1.6E-52 T 23-04-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 SD28_RS00580 ce80db3a6142dd4bb2bb3664f7b81e23 227 PANTHER PTHR34108:SF1 1 227 2.5E-40 T 23-04-2016 SD28_RS00580 ce80db3a6142dd4bb2bb3664f7b81e23 227 SUPERFAMILY SSF63848 120 226 1.57E-27 T 23-04-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 SD28_RS00580 ce80db3a6142dd4bb2bb3664f7b81e23 227 Gene3D G3DSA:2.160.20.70 107 226 5.6E-34 T 23-04-2016 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 SD28_RS00580 ce80db3a6142dd4bb2bb3664f7b81e23 227 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 121 225 7.0E-29 T 23-04-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 SD28_RS00580 ce80db3a6142dd4bb2bb3664f7b81e23 227 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 4 227 22.615 T 23-04-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 SD28_RS00580 ce80db3a6142dd4bb2bb3664f7b81e23 227 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 1 104 3.2E-14 T 23-04-2016 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 SD28_RS02210 2b06c799f2eacc1828a0b6032f5789df 239 Gene3D G3DSA:3.40.50.270 195 222 1.4E-17 T 23-04-2016 SD28_RS02210 2b06c799f2eacc1828a0b6032f5789df 239 Gene3D G3DSA:3.40.50.270 49 154 1.4E-17 T 23-04-2016 SD28_RS02210 2b06c799f2eacc1828a0b6032f5789df 239 SUPERFAMILY SSF52788 175 222 6.53E-16 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily SD28_RS02210 2b06c799f2eacc1828a0b6032f5789df 239 SUPERFAMILY SSF52788 49 147 6.53E-16 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 SUPERFAMILY SSF52172 367 466 4.4E-6 T 23-04-2016 IPR011006 CheY-like superfamily SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 Gene3D G3DSA:3.30.565.10 200 347 8.8E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 PANTHER PTHR24423:SF427 10 352 3.5E-30 T 23-04-2016 SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 Gene3D G3DSA:1.10.287.130 127 185 4.7E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 244 347 1.7E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 Gene3D G3DSA:3.30.450.20 12 126 1.6E-11 T 23-04-2016 SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 Pfam PF00072 Response regulator receiver domain 367 461 2.3E-5 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 SMART SM00387 242 349 1.1E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 Gene3D G3DSA:3.40.50.2300 367 462 3.7E-5 T 23-04-2016 SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 SUPERFAMILY SSF55785 16 127 1.38E-11 T 23-04-2016 IPR000014 PAS domain SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 PRINTS PR00344 Bacterial sensor protein C-terminal signature 279 293 5.0E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 346 5.0E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 PRINTS PR00344 Bacterial sensor protein C-terminal signature 309 327 5.0E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 PANTHER PTHR24423 10 352 3.5E-30 T 23-04-2016 SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 Pfam PF08448 PAS fold 16 127 6.4E-6 T 23-04-2016 IPR013656 PAS fold-4 SD28_RS04030 9003423058ab0e1b9a1d686b6a3fc252 810 SUPERFAMILY SSF55874 205 346 2.23E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS06905 8f302153d9e83cd5368dd82f92c8be50 761 Hamap MF_01895 Ribonuclease R [rnr]. 43 721 48.209 T 23-04-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 SD28_RS06905 8f302153d9e83cd5368dd82f92c8be50 761 SUPERFAMILY SSF50249 230 637 1.66E-134 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS06905 8f302153d9e83cd5368dd82f92c8be50 761 PANTHER PTHR23355:SF9 6 761 1.5E-180 T 23-04-2016 SD28_RS06905 8f302153d9e83cd5368dd82f92c8be50 761 SUPERFAMILY SSF50249 641 720 4.48E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS06905 8f302153d9e83cd5368dd82f92c8be50 761 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 112 720 1.3E-179 T 23-04-2016 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 SD28_RS06905 8f302153d9e83cd5368dd82f92c8be50 761 Pfam PF00575 S1 RNA binding domain 639 712 3.8E-8 T 23-04-2016 IPR003029 S1 domain GO:0003676 SD28_RS06905 8f302153d9e83cd5368dd82f92c8be50 761 TIGRFAM TIGR02063 RNase_R: ribonuclease R 24 721 3.4E-222 T 23-04-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 SD28_RS06905 8f302153d9e83cd5368dd82f92c8be50 761 Gene3D G3DSA:2.40.50.140 640 728 2.5E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS06905 8f302153d9e83cd5368dd82f92c8be50 761 ProSitePatterns PS01175 Ribonuclease II family signature. 559 583 - T 23-04-2016 IPR022966 Ribonuclease II/R, conserved site SD28_RS06905 8f302153d9e83cd5368dd82f92c8be50 761 SMART SM00316 638 721 2.0E-8 T 23-04-2016 IPR022967 RNA-binding domain, S1 SD28_RS06905 8f302153d9e83cd5368dd82f92c8be50 761 Pfam PF00773 RNB domain 261 591 1.0E-108 T 23-04-2016 SD28_RS06905 8f302153d9e83cd5368dd82f92c8be50 761 SMART SM00955 261 592 1.3E-173 T 23-04-2016 SD28_RS06905 8f302153d9e83cd5368dd82f92c8be50 761 PANTHER PTHR23355 6 761 1.5E-180 T 23-04-2016 SD28_RS07470 68e520af35f3bb180bcef3d4a0b46aab 308 Pfam PF02541 Ppx/GppA phosphatase family 22 301 1.2E-67 T 23-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 SD28_RS07470 68e520af35f3bb180bcef3d4a0b46aab 308 SUPERFAMILY SSF53067 131 301 1.94E-42 T 23-04-2016 SD28_RS07470 68e520af35f3bb180bcef3d4a0b46aab 308 SUPERFAMILY SSF53067 4 124 5.5E-28 T 23-04-2016 SD28_RS07470 68e520af35f3bb180bcef3d4a0b46aab 308 PANTHER PTHR30005 5 307 2.9E-95 T 23-04-2016 SD28_RS07470 68e520af35f3bb180bcef3d4a0b46aab 308 PANTHER PTHR30005:SF4 5 307 2.9E-95 T 23-04-2016 SD28_RS07470 68e520af35f3bb180bcef3d4a0b46aab 308 Gene3D G3DSA:3.30.420.150 130 301 1.8E-45 T 23-04-2016 SD28_RS07470 68e520af35f3bb180bcef3d4a0b46aab 308 Gene3D G3DSA:3.30.420.40 3 125 1.8E-36 T 23-04-2016 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 Pfam PF14520 Helix-hairpin-helix domain 374 415 3.6E-5 T 23-04-2016 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 Pfam PF14520 Helix-hairpin-helix domain 430 484 2.3E-6 T 23-04-2016 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 SUPERFAMILY SSF54814 207 282 7.85E-26 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 Pfam PF08529 NusA N-terminal domain 4 127 1.2E-26 T 23-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 Gene3D G3DSA:2.40.50.140 132 202 2.3E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 SUPERFAMILY SSF54814 284 351 4.9E-11 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 SUPERFAMILY SSF69705 1 128 1.22E-30 T 23-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 438 487 6.2E-14 T 23-04-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 369 418 3.9E-17 T 23-04-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 350 9.4E-99 T 23-04-2016 IPR010213 Transcription termination factor NusA GO:0003723 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 Gene3D G3DSA:1.10.150.20 360 420 1.7E-20 T 23-04-2016 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 Gene3D G3DSA:1.10.150.20 427 488 6.1E-21 T 23-04-2016 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 414 26.371 T 23-04-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 PANTHER PTHR22648 1 446 5.8E-119 T 23-04-2016 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 SUPERFAMILY SSF50249 135 204 2.34E-13 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 SMART SM00316 136 205 4.9E-9 T 23-04-2016 IPR022967 RNA-binding domain, S1 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 Gene3D G3DSA:3.30.1480.10 1 128 6.2E-33 T 23-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 Pfam PF00575 S1 RNA binding domain 135 193 1.4E-6 T 23-04-2016 IPR003029 S1 domain GO:0003676 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 PANTHER PTHR22648:SF0 1 446 5.8E-119 T 23-04-2016 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 Gene3D G3DSA:3.30.300.20 284 355 2.2E-21 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 SMART SM00322 235 298 3.7 T 23-04-2016 IPR004087 K Homology domain GO:0003676 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 SMART SM00322 309 418 0.076 T 23-04-2016 IPR004087 K Homology domain GO:0003676 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 Pfam PF13184 NusA-like KH domain 236 301 1.6E-23 T 23-04-2016 IPR025249 KH domain, NusA-like GO:0003723 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 SUPERFAMILY SSF47794 427 488 1.19E-14 T 23-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 SUPERFAMILY SSF47794 358 419 1.88E-16 T 23-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 SD28_RS00765 63532ee9757b6e5dcd6d24dae372f75c 489 Gene3D G3DSA:3.30.300.20 204 282 1.9E-31 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta SD28_RS04335 d1d6fdb3c20353903be3da6bd6873fe2 243 PANTHER PTHR24220 7 240 3.8E-140 T 23-04-2016 SD28_RS04335 d1d6fdb3c20353903be3da6bd6873fe2 243 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS04335 d1d6fdb3c20353903be3da6bd6873fe2 243 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 5 243 1.9E-117 T 23-04-2016 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 SD28_RS04335 d1d6fdb3c20353903be3da6bd6873fe2 243 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 217 238 1.6E-8 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal SD28_RS04335 d1d6fdb3c20353903be3da6bd6873fe2 243 Gene3D G3DSA:3.40.50.300 3 236 4.6E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04335 d1d6fdb3c20353903be3da6bd6873fe2 243 SMART SM00382 30 215 1.5E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS04335 d1d6fdb3c20353903be3da6bd6873fe2 243 SUPERFAMILY SSF52540 4 239 2.49E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04335 d1d6fdb3c20353903be3da6bd6873fe2 243 PANTHER PTHR24220:SF497 7 240 3.8E-140 T 23-04-2016 SD28_RS04335 d1d6fdb3c20353903be3da6bd6873fe2 243 Pfam PF00005 ABC transporter 21 168 9.5E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS01505 984a32aecc852d68f7f9b2ebfe6f0ed3 514 PANTHER PTHR11785:SF322 5 389 2.3E-79 T 23-04-2016 SD28_RS01505 984a32aecc852d68f7f9b2ebfe6f0ed3 514 PANTHER PTHR11785 5 389 2.3E-79 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS01505 984a32aecc852d68f7f9b2ebfe6f0ed3 514 Pfam PF13520 Amino acid permease 6 425 6.8E-37 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS01505 984a32aecc852d68f7f9b2ebfe6f0ed3 514 PIRSF PIRSF006060 1 449 3.1E-53 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS01505 984a32aecc852d68f7f9b2ebfe6f0ed3 514 ProSitePatterns PS00218 Amino acid permeases signature. 35 65 - T 23-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 SD28_RS06795 ec2c3085a7dda0836536655a300a43c2 582 Gene3D G3DSA:3.40.50.720 266 442 9.1E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06795 ec2c3085a7dda0836536655a300a43c2 582 SUPERFAMILY SSF51735 266 532 6.13E-55 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06795 ec2c3085a7dda0836536655a300a43c2 582 PANTHER PTHR10366:SF256 267 574 1.2E-107 T 23-04-2016 SD28_RS06795 ec2c3085a7dda0836536655a300a43c2 582 PANTHER PTHR10366 267 574 1.2E-107 T 23-04-2016 SD28_RS06795 ec2c3085a7dda0836536655a300a43c2 582 Pfam PF02719 Polysaccharide biosynthesis protein 268 540 8.3E-116 T 23-04-2016 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain SD28_RS06795 ec2c3085a7dda0836536655a300a43c2 582 Gene3D G3DSA:3.90.25.10 443 520 2.9E-9 T 23-04-2016 SD28_RS06795 ec2c3085a7dda0836536655a300a43c2 582 SUPERFAMILY SSF53335 98 318 1.2E-13 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS06795 ec2c3085a7dda0836536655a300a43c2 582 Gene3D G3DSA:3.40.50.720 128 211 1.8E-11 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06885 909d4f01866be2176b90b4238b2f7a68 387 Gene3D G3DSA:3.40.50.150 114 383 8.1E-75 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS06885 909d4f01866be2176b90b4238b2f7a68 387 PANTHER PTHR10108:SF795 318 382 3.5E-78 T 23-04-2016 SD28_RS06885 909d4f01866be2176b90b4238b2f7a68 387 PANTHER PTHR10108:SF795 58 301 3.5E-78 T 23-04-2016 SD28_RS06885 909d4f01866be2176b90b4238b2f7a68 387 PIRSF PIRSF003085 4 387 8.9E-106 T 23-04-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 SD28_RS06885 909d4f01866be2176b90b4238b2f7a68 387 PANTHER PTHR10108 318 382 3.5E-78 T 23-04-2016 SD28_RS06885 909d4f01866be2176b90b4238b2f7a68 387 PANTHER PTHR10108 58 301 3.5E-78 T 23-04-2016 SD28_RS06885 909d4f01866be2176b90b4238b2f7a68 387 SUPERFAMILY SSF53335 125 382 8.05E-58 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS06885 909d4f01866be2176b90b4238b2f7a68 387 Pfam PF02353 Mycolic acid cyclopropane synthetase 117 382 2.4E-76 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 238 261 2.2E-32 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 524 537 2.2E-32 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 400 415 2.2E-32 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 2.2E-32 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 558 567 2.2E-32 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 Pfam PF06827 Zinc finger found in FPG and IleRS 896 922 6.6E-6 T 23-04-2016 IPR010663 Zinc finger, FPG/IleRS-type SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 Gene3D G3DSA:3.90.740.10 207 388 4.6E-57 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 840 1.1E-282 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 SUPERFAMILY SSF50677 204 402 3.14E-52 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 Pfam PF08264 Anticodon-binding domain of tRNA 682 838 4.1E-23 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 PANTHER PTHR11946:SF11 234 259 0.0 T 23-04-2016 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 PANTHER PTHR11946:SF11 282 935 0.0 T 23-04-2016 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 PANTHER PTHR11946:SF11 6 215 0.0 T 23-04-2016 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 Gene3D G3DSA:1.10.730.10 639 780 8.3E-37 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 925 20.999 T 23-04-2016 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 638 1.3E-216 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 SUPERFAMILY SSF47323 649 924 9.91E-66 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 Gene3D G3DSA:3.40.50.620 402 633 3.1E-139 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 Gene3D G3DSA:3.40.50.620 17 205 3.1E-139 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 SUPERFAMILY SSF52374 3 202 6.4E-137 T 23-04-2016 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 SUPERFAMILY SSF52374 402 644 6.4E-137 T 23-04-2016 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 PANTHER PTHR11946 234 259 0.0 T 23-04-2016 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 PANTHER PTHR11946 282 935 0.0 T 23-04-2016 SD28_RS07650 e41467c924e7602dee2b9717dbab71f4 935 PANTHER PTHR11946 6 215 0.0 T 23-04-2016 SD28_RS06535 3abc107f6b645074bc2dce92368138a5 171 PANTHER PTHR30194 1 168 2.3E-62 T 23-04-2016 SD28_RS06535 3abc107f6b645074bc2dce92368138a5 171 SUPERFAMILY SSF53098 1 155 3.6E-50 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS06535 3abc107f6b645074bc2dce92368138a5 171 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 112 146 - T 23-04-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 SD28_RS06535 3abc107f6b645074bc2dce92368138a5 171 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 1 152 46.745 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 SD28_RS06535 3abc107f6b645074bc2dce92368138a5 171 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 3 154 1.0E-56 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 SD28_RS06535 3abc107f6b645074bc2dce92368138a5 171 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 60 76 1.5E-34 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 SD28_RS06535 3abc107f6b645074bc2dce92368138a5 171 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 106 125 1.5E-34 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 SD28_RS06535 3abc107f6b645074bc2dce92368138a5 171 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 82 98 1.5E-34 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 SD28_RS06535 3abc107f6b645074bc2dce92368138a5 171 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 137 149 1.5E-34 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 SD28_RS06535 3abc107f6b645074bc2dce92368138a5 171 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 4 17 1.5E-34 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 SD28_RS06535 3abc107f6b645074bc2dce92368138a5 171 Gene3D G3DSA:3.30.420.10 1 155 1.3E-62 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS06535 3abc107f6b645074bc2dce92368138a5 171 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 3 149 2.2E-55 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 SD28_RS01555 4ef2ce33a5db1fbcffa47690408b6bc9 548 SUPERFAMILY SSF52540 333 545 8.17E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01555 4ef2ce33a5db1fbcffa47690408b6bc9 548 PANTHER PTHR11384 4 548 3.0E-83 T 23-04-2016 SD28_RS01555 4ef2ce33a5db1fbcffa47690408b6bc9 548 Gene3D G3DSA:1.20.1560.10 20 335 3.6E-6 T 23-04-2016 SD28_RS01555 4ef2ce33a5db1fbcffa47690408b6bc9 548 Gene3D G3DSA:3.40.50.300 356 537 3.7E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01555 4ef2ce33a5db1fbcffa47690408b6bc9 548 Pfam PF06472 ABC transporter transmembrane region 2 3 289 1.8E-27 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 SD28_RS01555 4ef2ce33a5db1fbcffa47690408b6bc9 548 SUPERFAMILY SSF90123 24 335 6.28E-14 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 SD28_RS01555 4ef2ce33a5db1fbcffa47690408b6bc9 548 PANTHER PTHR11384:SF3 4 548 3.0E-83 T 23-04-2016 SD28_RS01555 4ef2ce33a5db1fbcffa47690408b6bc9 548 Pfam PF00005 ABC transporter 374 508 1.2E-14 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS01555 4ef2ce33a5db1fbcffa47690408b6bc9 548 ProSitePatterns PS00211 ABC transporters family signature. 480 494 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 Pfam PF01619 Proline dehydrogenase 196 485 5.4E-93 T 23-04-2016 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|UniPathway: UPA00261 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 SUPERFAMILY SSF53720 565 1029 1.07E-122 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 Gene3D G3DSA:3.20.20.220 183 523 4.6E-109 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 SUPERFAMILY SSF53720 1074 1322 5.37E-37 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 Gene3D G3DSA:1.20.5.550 24 62 2.6E-6 T 23-04-2016 IPR024090 Proline dehydrogenase PutA, domain I GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 70 180 2.8E-43 T 23-04-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 Gene3D G3DSA:3.40.605.10 1037 1322 8.9E-38 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 SUPERFAMILY SSF81935 15 182 1.31E-57 T 23-04-2016 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 Gene3D G3DSA:1.10.2060.10 64 181 2.9E-46 T 23-04-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 Gene3D G3DSA:3.40.309.10 818 1005 2.9E-42 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 524 1026 3.6E-205 T 23-04-2016 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 830 841 - T 23-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 Gene3D G3DSA:3.40.605.10 568 817 3.5E-72 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 PANTHER PTHR11699:SF18 537 1023 6.3E-163 T 23-04-2016 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 Pfam PF00171 Aldehyde dehydrogenase family 570 1026 1.5E-117 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 Pfam PF00171 Aldehyde dehydrogenase family 1075 1294 5.5E-34 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 SUPERFAMILY SSF51730 183 525 9.02E-115 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like SD28_RS05480 490018835f431e556ea47905ef7634cb 1354 PANTHER PTHR11699 537 1023 6.3E-163 T 23-04-2016 SD28_RS00715 81df39bd91ce0d428f842d71d325afc0 101 SUPERFAMILY SSF81333 12 85 1.01E-15 T 23-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 SD28_RS00715 81df39bd91ce0d428f842d71d325afc0 101 Gene3D G3DSA:1.20.20.10 11 85 3.8E-26 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 SD28_RS00715 81df39bd91ce0d428f842d71d325afc0 101 Pfam PF00137 ATP synthase subunit C 17 79 4.0E-7 T 23-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 SD28_RS00715 81df39bd91ce0d428f842d71d325afc0 101 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 27 83 2.5E-21 T 23-04-2016 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 SD28_RS00715 81df39bd91ce0d428f842d71d325afc0 101 Hamap MF_01396 ATP synthase subunit c [atpH]. 15 83 14.214 T 23-04-2016 SD28_RS00715 81df39bd91ce0d428f842d71d325afc0 101 PRINTS PR00124 ATP synthase C subunit signature 39 54 5.7E-11 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 SD28_RS00715 81df39bd91ce0d428f842d71d325afc0 101 PRINTS PR00124 ATP synthase C subunit signature 18 37 5.7E-11 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 SD28_RS00715 81df39bd91ce0d428f842d71d325afc0 101 PRINTS PR00124 ATP synthase C subunit signature 56 81 5.7E-11 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 SD28_RS00715 81df39bd91ce0d428f842d71d325afc0 101 PANTHER PTHR10031 17 84 4.3E-14 T 23-04-2016 SD28_RS00715 81df39bd91ce0d428f842d71d325afc0 101 ProSitePatterns PS00605 ATP synthase c subunit signature. 46 67 - T 23-04-2016 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site SD28_RS00235 ce3eff73aaff917097a04831b46ccdeb 610 Pfam PF00400 WD domain, G-beta repeat 260 298 0.11 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00235 ce3eff73aaff917097a04831b46ccdeb 610 Pfam PF00400 WD domain, G-beta repeat 369 394 0.17 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00235 ce3eff73aaff917097a04831b46ccdeb 610 SMART SM00320 214 251 350.0 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00235 ce3eff73aaff917097a04831b46ccdeb 610 SMART SM00320 361 395 0.26 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00235 ce3eff73aaff917097a04831b46ccdeb 610 SMART SM00320 304 352 1.4 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00235 ce3eff73aaff917097a04831b46ccdeb 610 SMART SM00320 255 298 0.59 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00235 ce3eff73aaff917097a04831b46ccdeb 610 SMART SM00320 513 570 240.0 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00235 ce3eff73aaff917097a04831b46ccdeb 610 Gene3D G3DSA:2.130.10.10 224 548 6.2E-28 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 SD28_RS00235 ce3eff73aaff917097a04831b46ccdeb 610 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 285 299 - T 23-04-2016 IPR019775 WD40 repeat, conserved site SD28_RS00235 ce3eff73aaff917097a04831b46ccdeb 610 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 339 353 - T 23-04-2016 IPR019775 WD40 repeat, conserved site SD28_RS00235 ce3eff73aaff917097a04831b46ccdeb 610 SUPERFAMILY SSF50978 219 571 6.87E-27 T 23-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 SD28_RS00235 ce3eff73aaff917097a04831b46ccdeb 610 PRINTS PR00320 G protein beta WD-40 repeat signature 339 353 6.5E-5 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat SD28_RS00235 ce3eff73aaff917097a04831b46ccdeb 610 PRINTS PR00320 G protein beta WD-40 repeat signature 382 396 6.5E-5 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat SD28_RS00235 ce3eff73aaff917097a04831b46ccdeb 610 PRINTS PR00320 G protein beta WD-40 repeat signature 285 299 6.5E-5 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat SD28_RS00190 48b8c912edde9990b7c750a76840ad13 435 Gene3D G3DSA:2.130.10.10 143 433 2.4E-61 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 SD28_RS00190 48b8c912edde9990b7c750a76840ad13 435 PANTHER PTHR11731:SF123 1 113 2.6E-37 T 23-04-2016 SD28_RS00190 48b8c912edde9990b7c750a76840ad13 435 PANTHER PTHR11731:SF123 151 432 2.6E-37 T 23-04-2016 SD28_RS00190 48b8c912edde9990b7c750a76840ad13 435 Gene3D G3DSA:3.40.50.10070 22 142 6.9E-21 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 SD28_RS00190 48b8c912edde9990b7c750a76840ad13 435 Hamap MF_00671 Protein TolB [tolB]. 6 430 27.959 T 23-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 SD28_RS00190 48b8c912edde9990b7c750a76840ad13 435 SUPERFAMILY SSF69304 158 432 5.89E-43 T 23-04-2016 SD28_RS00190 48b8c912edde9990b7c750a76840ad13 435 Pfam PF07676 WD40-like Beta Propeller Repeat 232 269 5.3E-4 T 23-04-2016 IPR011659 WD40-like Beta Propeller SD28_RS00190 48b8c912edde9990b7c750a76840ad13 435 Pfam PF07676 WD40-like Beta Propeller Repeat 193 222 6.0E-5 T 23-04-2016 IPR011659 WD40-like Beta Propeller SD28_RS00190 48b8c912edde9990b7c750a76840ad13 435 Pfam PF07676 WD40-like Beta Propeller Repeat 281 312 8.9E-10 T 23-04-2016 IPR011659 WD40-like Beta Propeller SD28_RS00190 48b8c912edde9990b7c750a76840ad13 435 PANTHER PTHR11731 1 113 2.6E-37 T 23-04-2016 SD28_RS00190 48b8c912edde9990b7c750a76840ad13 435 PANTHER PTHR11731 151 432 2.6E-37 T 23-04-2016 SD28_RS00190 48b8c912edde9990b7c750a76840ad13 435 SUPERFAMILY SSF52964 27 152 9.15E-17 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 SD28_RS01475 9810260c62bfc7011c916c163bdfd314 230 PANTHER PTHR37314 9 230 4.8E-17 T 23-04-2016 SD28_RS01475 9810260c62bfc7011c916c163bdfd314 230 Pfam PF06912 Protein of unknown function (DUF1275) 13 210 7.3E-27 T 23-04-2016 IPR010699 Protein of unknown function DUF1275 SD28_RS05465 1e3e99cf39620d19d842d3a923e2c53e 392 SUPERFAMILY SSF102645 172 391 4.71E-63 T 23-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 SD28_RS05465 1e3e99cf39620d19d842d3a923e2c53e 392 PANTHER PTHR14359 4 392 6.0E-129 T 23-04-2016 SD28_RS05465 1e3e99cf39620d19d842d3a923e2c53e 392 Pfam PF02441 Flavoprotein 4 134 9.3E-33 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 SD28_RS05465 1e3e99cf39620d19d842d3a923e2c53e 392 PANTHER PTHR14359:SF20 4 392 6.0E-129 T 23-04-2016 SD28_RS05465 1e3e99cf39620d19d842d3a923e2c53e 392 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 3 388 2.1E-108 T 23-04-2016 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|UniPathway: UPA00241|UniPathway: UPA00241 SD28_RS05465 1e3e99cf39620d19d842d3a923e2c53e 392 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 184 362 7.1E-55 T 23-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 SD28_RS05465 1e3e99cf39620d19d842d3a923e2c53e 392 Gene3D G3DSA:3.40.50.10300 179 391 2.6E-65 T 23-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 SD28_RS05465 1e3e99cf39620d19d842d3a923e2c53e 392 SUPERFAMILY SSF52507 4 175 1.96E-48 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 SD28_RS05465 1e3e99cf39620d19d842d3a923e2c53e 392 Gene3D G3DSA:3.40.50.1950 3 176 8.7E-50 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 SD28_RS00010 d0038ad0b09c6c77f6d1dbe95bc9addf 118 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 3 115 4.6E-31 T 23-04-2016 IPR003509 Uncharacterised protein family UPF0102 SD28_RS00010 d0038ad0b09c6c77f6d1dbe95bc9addf 118 Hamap MF_00048 UPF0102 protein YraN [yraN]. 4 116 22.337 T 23-04-2016 IPR003509 Uncharacterised protein family UPF0102 SD28_RS00010 d0038ad0b09c6c77f6d1dbe95bc9addf 118 PANTHER PTHR34039 1 118 3.1E-35 T 23-04-2016 SD28_RS00010 d0038ad0b09c6c77f6d1dbe95bc9addf 118 PANTHER PTHR34039:SF1 1 118 3.1E-35 T 23-04-2016 SD28_RS00010 d0038ad0b09c6c77f6d1dbe95bc9addf 118 Gene3D G3DSA:3.40.1350.10 11 115 2.3E-35 T 23-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 SD28_RS00010 d0038ad0b09c6c77f6d1dbe95bc9addf 118 Pfam PF02021 Uncharacterised protein family UPF0102 11 103 1.4E-25 T 23-04-2016 IPR003509 Uncharacterised protein family UPF0102 SD28_RS00010 d0038ad0b09c6c77f6d1dbe95bc9addf 118 SUPERFAMILY SSF52980 6 113 2.23E-22 T 23-04-2016 IPR011335 Restriction endonuclease type II-like SD28_RS06000 5dfcf2205fa3f3caf57c33a669dc00a0 238 PANTHER PTHR34990:SF1 5 231 2.7E-63 T 23-04-2016 SD28_RS06000 5dfcf2205fa3f3caf57c33a669dc00a0 238 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 238 75.377 T 23-04-2016 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54|UniPathway: UPA00359 SD28_RS06000 5dfcf2205fa3f3caf57c33a669dc00a0 238 Gene3D G3DSA:3.60.21.10 176 213 2.2E-19 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like SD28_RS06000 5dfcf2205fa3f3caf57c33a669dc00a0 238 Gene3D G3DSA:3.60.21.10 7 129 2.2E-19 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like SD28_RS06000 5dfcf2205fa3f3caf57c33a669dc00a0 238 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 8 229 4.9E-66 T 23-04-2016 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54|UniPathway: UPA00359 SD28_RS06000 5dfcf2205fa3f3caf57c33a669dc00a0 238 PANTHER PTHR34990 5 231 2.7E-63 T 23-04-2016 SD28_RS06000 5dfcf2205fa3f3caf57c33a669dc00a0 238 Pfam PF00149 Calcineurin-like phosphoesterase 7 199 2.6E-13 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 SD28_RS06000 5dfcf2205fa3f3caf57c33a669dc00a0 238 SUPERFAMILY SSF56300 7 223 2.37E-24 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like SD28_RS04165 792b2830647703f464523893f0d738ce 234 PANTHER PTHR12289 16 202 1.3E-52 T 23-04-2016 SD28_RS04165 792b2830647703f464523893f0d738ce 234 Pfam PF17171 Glutathione S-transferase, C-terminal domain 166 227 1.0E-9 T 23-04-2016 IPR033468 Metaxin, glutathione S-transferase domain SD28_RS04165 792b2830647703f464523893f0d738ce 234 Pfam PF17172 Glutathione S-transferase N-terminal domain 19 116 2.6E-27 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS04165 792b2830647703f464523893f0d738ce 234 Gene3D G3DSA:3.40.30.10 3 74 1.1E-4 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS04165 792b2830647703f464523893f0d738ce 234 Gene3D G3DSA:1.20.1050.10 159 202 0.001 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like SD28_RS04165 792b2830647703f464523893f0d738ce 234 SUPERFAMILY SSF52833 15 103 6.87E-10 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 17 895 0.0 T 23-04-2016 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 SUPERFAMILY SSF52016 635 895 8.04E-79 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 PRINTS PR00415 Aconitase family signature 217 232 6.2E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 PRINTS PR00415 Aconitase family signature 372 386 6.2E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 PRINTS PR00415 Aconitase family signature 279 292 6.2E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 PRINTS PR00415 Aconitase family signature 435 446 6.2E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 PRINTS PR00415 Aconitase family signature 146 159 6.2E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 PRINTS PR00415 Aconitase family signature 497 510 6.2E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 PRINTS PR00415 Aconitase family signature 203 216 6.2E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 PRINTS PR00415 Aconitase family signature 293 306 6.2E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 PRINTS PR00415 Aconitase family signature 170 178 6.2E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 PANTHER PTHR11670:SF1 420 715 0.0 T 23-04-2016 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 PANTHER PTHR11670:SF1 11 393 0.0 T 23-04-2016 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 PANTHER PTHR11670:SF1 754 898 0.0 T 23-04-2016 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 ProSitePatterns PS01244 Aconitase family signature 2. 497 510 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 PANTHER PTHR11670 420 715 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 PANTHER PTHR11670 11 393 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 PANTHER PTHR11670 754 898 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 SUPERFAMILY SSF53732 12 631 2.75E-215 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 Gene3D G3DSA:3.30.499.10 368 579 4.9E-62 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 ProSitePatterns PS00450 Aconitase family signature 1. 431 447 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 Gene3D G3DSA:3.20.19.10 642 894 3.1E-70 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 Pfam PF00694 Aconitase C-terminal domain 695 820 1.2E-45 T 23-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 Gene3D G3DSA:3.30.499.10 22 249 2.5E-76 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 Pfam PF00330 Aconitase family (aconitate hydratase) 65 566 4.3E-176 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00505 2d627d0f6d4e335f956bf16795c56e52 926 Gene3D G3DSA:3.40.1060.10 250 367 4.2E-36 T 23-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 SD28_RS00345 918572a0daf9e36505a1427b59bc94e4 323 SUPERFAMILY SSF47364 22 102 4.84E-17 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 SD28_RS00345 918572a0daf9e36505a1427b59bc94e4 323 Pfam PF02881 SRP54-type protein, helical bundle domain 39 104 7.7E-12 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 SD28_RS00345 918572a0daf9e36505a1427b59bc94e4 323 Gene3D G3DSA:3.40.50.300 134 323 5.0E-79 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00345 918572a0daf9e36505a1427b59bc94e4 323 SMART SM00962 123 323 5.0E-111 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 SD28_RS00345 918572a0daf9e36505a1427b59bc94e4 323 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 297 310 - T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 SD28_RS00345 918572a0daf9e36505a1427b59bc94e4 323 PANTHER PTHR11564 17 323 1.2E-134 T 23-04-2016 SD28_RS00345 918572a0daf9e36505a1427b59bc94e4 323 SMART SM00382 122 274 1.3E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS00345 918572a0daf9e36505a1427b59bc94e4 323 SMART SM00963 27 108 2.1E-21 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 SD28_RS00345 918572a0daf9e36505a1427b59bc94e4 323 PANTHER PTHR11564:SF16 17 323 1.2E-134 T 23-04-2016 SD28_RS00345 918572a0daf9e36505a1427b59bc94e4 323 SUPERFAMILY SSF52540 121 320 5.5E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00345 918572a0daf9e36505a1427b59bc94e4 323 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 53 323 4.3E-109 T 23-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 SD28_RS00345 918572a0daf9e36505a1427b59bc94e4 323 Pfam PF00448 SRP54-type protein, GTPase domain 124 322 3.5E-75 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 SD28_RS00345 918572a0daf9e36505a1427b59bc94e4 323 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 51 323 58.892 T 23-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 SD28_RS00345 918572a0daf9e36505a1427b59bc94e4 323 Gene3D G3DSA:1.20.120.140 53 133 9.9E-27 T 23-04-2016 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 Gene3D G3DSA:3.40.50.300 416 608 6.0E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 Pfam PF01043 SecA preprotein cross-linking domain 231 357 4.1E-36 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 SMART SM00957 5 401 1.0E-284 T 23-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 Pfam PF07517 SecA DEAD-like domain 6 400 3.7E-131 T 23-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 Hamap MF_01382 Protein translocase subunit SecA [secA]. 4 830 19.403 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 PANTHER PTHR30612 1 519 0.0 T 23-04-2016 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 PANTHER PTHR30612 549 908 0.0 T 23-04-2016 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 Pfam PF07516 SecA Wing and Scaffold domain 620 827 2.1E-58 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 SUPERFAMILY SSF81767 226 367 2.75E-41 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 Pfam PF02810 SEC-C motif 888 906 1.6E-10 T 23-04-2016 IPR004027 SEC-C motif SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 Gene3D G3DSA:3.40.50.300 3 227 2.0E-124 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 Gene3D G3DSA:3.40.50.300 368 415 2.0E-124 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 SUPERFAMILY SSF81886 884 896 2.62E-72 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 SUPERFAMILY SSF81886 620 838 2.62E-72 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 SUPERFAMILY SSF52540 4 227 1.65E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 SUPERFAMILY SSF52540 367 414 1.65E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 27 815 0.0 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 Gene3D G3DSA:3.90.1440.10 229 367 1.2E-43 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 Gene3D G3DSA:1.10.3060.10 646 829 1.4E-50 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 PRINTS PR00906 SecA protein signature 169 189 3.1E-70 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 PRINTS PR00906 SecA protein signature 412 425 3.1E-70 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 PRINTS PR00906 SecA protein signature 375 392 3.1E-70 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 PRINTS PR00906 SecA protein signature 116 126 3.1E-70 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 PRINTS PR00906 SecA protein signature 62 86 3.1E-70 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 PRINTS PR00906 SecA protein signature 338 360 3.1E-70 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 PRINTS PR00906 SecA protein signature 100 114 3.1E-70 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 SMART SM00958 227 357 7.2E-72 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 ProSitePatterns PS01312 SecA family signature. 499 514 - T 23-04-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 SD28_RS06140 bb8464ed919cc9561d61455ee9dc9e19 908 SUPERFAMILY SSF52540 415 604 3.15E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04755 08b8ec13c2f6de4b234f45ae0cc72030 364 SMART SM00474 2 168 7.6E-34 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 SD28_RS04755 08b8ec13c2f6de4b234f45ae0cc72030 364 SUPERFAMILY SSF47819 295 359 5.23E-7 T 23-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 SD28_RS04755 08b8ec13c2f6de4b234f45ae0cc72030 364 PANTHER PTHR12124 2 252 1.9E-57 T 23-04-2016 SD28_RS04755 08b8ec13c2f6de4b234f45ae0cc72030 364 SUPERFAMILY SSF53098 2 188 1.33E-57 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS04755 08b8ec13c2f6de4b234f45ae0cc72030 364 Pfam PF01612 3'-5' exonuclease 3 167 1.7E-41 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 SD28_RS04755 08b8ec13c2f6de4b234f45ae0cc72030 364 SUPERFAMILY SSF47819 192 261 4.36E-12 T 23-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 SD28_RS04755 08b8ec13c2f6de4b234f45ae0cc72030 364 Gene3D G3DSA:3.30.420.10 2 178 1.8E-16 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS04755 08b8ec13c2f6de4b234f45ae0cc72030 364 Gene3D G3DSA:1.20.1390.10 252 311 4.9E-4 T 23-04-2016 IPR002483 PWI domain GO:0006397 SD28_RS04755 08b8ec13c2f6de4b234f45ae0cc72030 364 Pfam PF00570 HRDC domain 215 257 8.2E-8 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 SD28_RS06930 882bc6c8c8c641932f4d4a329d8f03ea 272 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 3 264 4.2E-69 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 SD28_RS06930 882bc6c8c8c641932f4d4a329d8f03ea 272 Gene3D G3DSA:3.40.50.720 2 157 2.4E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06930 882bc6c8c8c641932f4d4a329d8f03ea 272 PIRSF PIRSF000193 1 267 4.1E-73 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 SD28_RS06930 882bc6c8c8c641932f4d4a329d8f03ea 272 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 160 264 8.4E-28 T 23-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 SD28_RS06930 882bc6c8c8c641932f4d4a329d8f03ea 272 SUPERFAMILY SSF48179 160 268 7.14E-28 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 SD28_RS06930 882bc6c8c8c641932f4d4a329d8f03ea 272 PANTHER PTHR11645:SF0 1 269 2.9E-87 T 23-04-2016 SD28_RS06930 882bc6c8c8c641932f4d4a329d8f03ea 272 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 1 264 23.864 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 SD28_RS06930 882bc6c8c8c641932f4d4a329d8f03ea 272 SUPERFAMILY SSF51735 2 157 2.41E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06930 882bc6c8c8c641932f4d4a329d8f03ea 272 PANTHER PTHR11645 1 269 2.9E-87 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 SD28_RS06930 882bc6c8c8c641932f4d4a329d8f03ea 272 Gene3D G3DSA:1.10.3730.10 160 264 9.3E-29 T 23-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 SD28_RS06930 882bc6c8c8c641932f4d4a329d8f03ea 272 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 96 2.6E-22 T 23-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal SD28_RS04345 dc17b1d26ba2cd3ffc84084c5dfed066 610 Gene3D G3DSA:3.40.50.1820 319 609 5.6E-81 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS04345 dc17b1d26ba2cd3ffc84084c5dfed066 610 SUPERFAMILY SSF53167 1 243 1.39E-54 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 SD28_RS04345 dc17b1d26ba2cd3ffc84084c5dfed066 610 PANTHER PTHR23024 350 610 2.5E-68 T 23-04-2016 SD28_RS04345 dc17b1d26ba2cd3ffc84084c5dfed066 610 Pfam PF01048 Phosphorylase superfamily 35 231 2.2E-20 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 SD28_RS04345 dc17b1d26ba2cd3ffc84084c5dfed066 610 Pfam PF07859 alpha/beta hydrolase fold 381 588 2.9E-57 T 23-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 SD28_RS04345 dc17b1d26ba2cd3ffc84084c5dfed066 610 SUPERFAMILY SSF53474 343 609 5.97E-59 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS04345 dc17b1d26ba2cd3ffc84084c5dfed066 610 PANTHER PTHR23024:SF24 350 610 2.5E-68 T 23-04-2016 SD28_RS04345 dc17b1d26ba2cd3ffc84084c5dfed066 610 Gene3D G3DSA:3.40.50.1580 2 250 5.6E-57 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 SD28_RS02885 b59c39321287de18cb71f74b465cc277 307 SMART SM00382 32 214 1.4E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS02885 b59c39321287de18cb71f74b465cc277 307 PANTHER PTHR24220:SF305 8 307 1.4E-124 T 23-04-2016 SD28_RS02885 b59c39321287de18cb71f74b465cc277 307 Gene3D G3DSA:3.40.50.300 6 229 3.5E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02885 b59c39321287de18cb71f74b465cc277 307 Pfam PF00005 ABC transporter 23 167 1.3E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS02885 b59c39321287de18cb71f74b465cc277 307 SUPERFAMILY SSF52540 5 231 9.69E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02885 b59c39321287de18cb71f74b465cc277 307 PANTHER PTHR24220 8 307 1.4E-124 T 23-04-2016 SD28_RS02885 b59c39321287de18cb71f74b465cc277 307 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS05030 4d3646164eed586bad294909227b472f 314 Pfam PF00665 Integrase core domain 163 263 5.6E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 SD28_RS05030 4d3646164eed586bad294909227b472f 314 PANTHER PTHR10948 1 311 4.2E-67 T 23-04-2016 SD28_RS05030 4d3646164eed586bad294909227b472f 314 Gene3D G3DSA:3.30.420.10 175 309 2.1E-16 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS05030 4d3646164eed586bad294909227b472f 314 SUPERFAMILY SSF53098 163 309 1.52E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS05030 4d3646164eed586bad294909227b472f 314 Pfam PF13936 Helix-turn-helix domain 4 45 2.9E-8 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain SD28_RS06095 4d3646164eed586bad294909227b472f 314 Pfam PF00665 Integrase core domain 163 263 5.6E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 SD28_RS06095 4d3646164eed586bad294909227b472f 314 PANTHER PTHR10948 1 311 4.2E-67 T 23-04-2016 SD28_RS06095 4d3646164eed586bad294909227b472f 314 Gene3D G3DSA:3.30.420.10 175 309 2.1E-16 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS06095 4d3646164eed586bad294909227b472f 314 SUPERFAMILY SSF53098 163 309 1.52E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS06095 4d3646164eed586bad294909227b472f 314 Pfam PF13936 Helix-turn-helix domain 4 45 2.9E-8 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain SD28_RS02985 4d3646164eed586bad294909227b472f 314 Pfam PF00665 Integrase core domain 163 263 5.6E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 SD28_RS02985 4d3646164eed586bad294909227b472f 314 PANTHER PTHR10948 1 311 4.2E-67 T 23-04-2016 SD28_RS02985 4d3646164eed586bad294909227b472f 314 Gene3D G3DSA:3.30.420.10 175 309 2.1E-16 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS02985 4d3646164eed586bad294909227b472f 314 SUPERFAMILY SSF53098 163 309 1.52E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS02985 4d3646164eed586bad294909227b472f 314 Pfam PF13936 Helix-turn-helix domain 4 45 2.9E-8 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain SD28_RS02795 4d3646164eed586bad294909227b472f 314 Pfam PF00665 Integrase core domain 163 263 5.6E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 SD28_RS02795 4d3646164eed586bad294909227b472f 314 PANTHER PTHR10948 1 311 4.2E-67 T 23-04-2016 SD28_RS02795 4d3646164eed586bad294909227b472f 314 Gene3D G3DSA:3.30.420.10 175 309 2.1E-16 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS02795 4d3646164eed586bad294909227b472f 314 SUPERFAMILY SSF53098 163 309 1.52E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS02795 4d3646164eed586bad294909227b472f 314 Pfam PF13936 Helix-turn-helix domain 4 45 2.9E-8 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain SD28_RS00015 4d3646164eed586bad294909227b472f 314 Pfam PF00665 Integrase core domain 163 263 5.6E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 SD28_RS00015 4d3646164eed586bad294909227b472f 314 PANTHER PTHR10948 1 311 4.2E-67 T 23-04-2016 SD28_RS00015 4d3646164eed586bad294909227b472f 314 Gene3D G3DSA:3.30.420.10 175 309 2.1E-16 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS00015 4d3646164eed586bad294909227b472f 314 SUPERFAMILY SSF53098 163 309 1.52E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS00015 4d3646164eed586bad294909227b472f 314 Pfam PF13936 Helix-turn-helix domain 4 45 2.9E-8 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain SD28_RS05860 4d3646164eed586bad294909227b472f 314 Pfam PF00665 Integrase core domain 163 263 5.6E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 SD28_RS05860 4d3646164eed586bad294909227b472f 314 PANTHER PTHR10948 1 311 4.2E-67 T 23-04-2016 SD28_RS05860 4d3646164eed586bad294909227b472f 314 Gene3D G3DSA:3.30.420.10 175 309 2.1E-16 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS05860 4d3646164eed586bad294909227b472f 314 SUPERFAMILY SSF53098 163 309 1.52E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS05860 4d3646164eed586bad294909227b472f 314 Pfam PF13936 Helix-turn-helix domain 4 45 2.9E-8 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain SD28_RS03690 4d3646164eed586bad294909227b472f 314 Pfam PF00665 Integrase core domain 163 263 5.6E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 SD28_RS03690 4d3646164eed586bad294909227b472f 314 PANTHER PTHR10948 1 311 4.2E-67 T 23-04-2016 SD28_RS03690 4d3646164eed586bad294909227b472f 314 Gene3D G3DSA:3.30.420.10 175 309 2.1E-16 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS03690 4d3646164eed586bad294909227b472f 314 SUPERFAMILY SSF53098 163 309 1.52E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS03690 4d3646164eed586bad294909227b472f 314 Pfam PF13936 Helix-turn-helix domain 4 45 2.9E-8 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain SD28_RS05700 4d3646164eed586bad294909227b472f 314 Pfam PF00665 Integrase core domain 163 263 5.6E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 SD28_RS05700 4d3646164eed586bad294909227b472f 314 PANTHER PTHR10948 1 311 4.2E-67 T 23-04-2016 SD28_RS05700 4d3646164eed586bad294909227b472f 314 Gene3D G3DSA:3.30.420.10 175 309 2.1E-16 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS05700 4d3646164eed586bad294909227b472f 314 SUPERFAMILY SSF53098 163 309 1.52E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS05700 4d3646164eed586bad294909227b472f 314 Pfam PF13936 Helix-turn-helix domain 4 45 2.9E-8 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain SD28_RS00645 4d3646164eed586bad294909227b472f 314 Pfam PF00665 Integrase core domain 163 263 5.6E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 SD28_RS00645 4d3646164eed586bad294909227b472f 314 PANTHER PTHR10948 1 311 4.2E-67 T 23-04-2016 SD28_RS00645 4d3646164eed586bad294909227b472f 314 Gene3D G3DSA:3.30.420.10 175 309 2.1E-16 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS00645 4d3646164eed586bad294909227b472f 314 SUPERFAMILY SSF53098 163 309 1.52E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS00645 4d3646164eed586bad294909227b472f 314 Pfam PF13936 Helix-turn-helix domain 4 45 2.9E-8 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain SD28_RS06985 4d3646164eed586bad294909227b472f 314 Pfam PF00665 Integrase core domain 163 263 5.6E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 SD28_RS06985 4d3646164eed586bad294909227b472f 314 PANTHER PTHR10948 1 311 4.2E-67 T 23-04-2016 SD28_RS06985 4d3646164eed586bad294909227b472f 314 Gene3D G3DSA:3.30.420.10 175 309 2.1E-16 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS06985 4d3646164eed586bad294909227b472f 314 SUPERFAMILY SSF53098 163 309 1.52E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS06985 4d3646164eed586bad294909227b472f 314 Pfam PF13936 Helix-turn-helix domain 4 45 2.9E-8 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain SD28_RS06565 4d3646164eed586bad294909227b472f 314 Pfam PF00665 Integrase core domain 163 263 5.6E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 SD28_RS06565 4d3646164eed586bad294909227b472f 314 PANTHER PTHR10948 1 311 4.2E-67 T 23-04-2016 SD28_RS06565 4d3646164eed586bad294909227b472f 314 Gene3D G3DSA:3.30.420.10 175 309 2.1E-16 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS06565 4d3646164eed586bad294909227b472f 314 SUPERFAMILY SSF53098 163 309 1.52E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS06565 4d3646164eed586bad294909227b472f 314 Pfam PF13936 Helix-turn-helix domain 4 45 2.9E-8 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain SD28_RS00445 4d3646164eed586bad294909227b472f 314 Pfam PF00665 Integrase core domain 163 263 5.6E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 SD28_RS00445 4d3646164eed586bad294909227b472f 314 PANTHER PTHR10948 1 311 4.2E-67 T 23-04-2016 SD28_RS00445 4d3646164eed586bad294909227b472f 314 Gene3D G3DSA:3.30.420.10 175 309 2.1E-16 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS00445 4d3646164eed586bad294909227b472f 314 SUPERFAMILY SSF53098 163 309 1.52E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS00445 4d3646164eed586bad294909227b472f 314 Pfam PF13936 Helix-turn-helix domain 4 45 2.9E-8 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain SD28_RS02845 4d3646164eed586bad294909227b472f 314 Pfam PF00665 Integrase core domain 163 263 5.6E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 SD28_RS02845 4d3646164eed586bad294909227b472f 314 PANTHER PTHR10948 1 311 4.2E-67 T 23-04-2016 SD28_RS02845 4d3646164eed586bad294909227b472f 314 Gene3D G3DSA:3.30.420.10 175 309 2.1E-16 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS02845 4d3646164eed586bad294909227b472f 314 SUPERFAMILY SSF53098 163 309 1.52E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS02845 4d3646164eed586bad294909227b472f 314 Pfam PF13936 Helix-turn-helix domain 4 45 2.9E-8 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 SMART SM00847 439 533 4.0E-25 T 23-04-2016 IPR007502 Helicase-associated domain GO:0004386 SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 PANTHER PTHR18934 713 841 8.2E-276 T 23-04-2016 SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 PANTHER PTHR18934 58 676 8.2E-276 T 23-04-2016 SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 SMART SM00382 74 359 4.7E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 529 672 2.8E-17 T 23-04-2016 IPR011709 Domain of unknown function DUF1605 SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 Pfam PF00270 DEAD/DEAH box helicase 71 213 2.4E-6 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 47 1073 0.0 T 23-04-2016 IPR010222 RNA helicase HrpA GO:0004004 SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 Pfam PF00271 Helicase conserved C-terminal domain 256 378 6.7E-13 T 23-04-2016 IPR001650 Helicase, C-terminal SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 Gene3D G3DSA:3.40.50.300 59 213 5.2E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 SMART SM00490 275 379 1.6E-11 T 23-04-2016 IPR001650 Helicase, C-terminal SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 SUPERFAMILY SSF52540 60 575 2.87E-93 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 Gene3D G3DSA:3.40.50.300 252 392 6.3E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 PANTHER PTHR18934:SF109 713 841 8.2E-276 T 23-04-2016 SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 PANTHER PTHR18934:SF109 58 676 8.2E-276 T 23-04-2016 SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 SMART SM00487 56 239 1.5E-23 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 Pfam PF11898 Domain of unknown function (DUF3418) 686 1315 3.6E-162 T 23-04-2016 IPR024590 RNA helicase HrpA, C-terminal SD28_RS06800 4a5480eb4ff1c6e7e256124c842fb9e8 1319 Pfam PF04408 Helicase associated domain (HA2) 442 530 2.7E-13 T 23-04-2016 IPR007502 Helicase-associated domain GO:0004386 SD28_RS01020 51779c93d459e6c3c2403287ebf96b88 451 PANTHER PTHR23135:SF5 3 443 9.3E-137 T 23-04-2016 SD28_RS01020 51779c93d459e6c3c2403287ebf96b88 451 Pfam PF01225 Mur ligase family, catalytic domain 5 102 9.8E-14 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS01020 51779c93d459e6c3c2403287ebf96b88 451 PANTHER PTHR23135 3 443 9.3E-137 T 23-04-2016 SD28_RS01020 51779c93d459e6c3c2403287ebf96b88 451 Pfam PF08245 Mur ligase middle domain 108 287 3.8E-19 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS01020 51779c93d459e6c3c2403287ebf96b88 451 Gene3D G3DSA:3.40.1190.10 91 310 1.8E-54 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS01020 51779c93d459e6c3c2403287ebf96b88 451 Pfam PF02875 Mur ligase family, glutamate ligase domain 310 395 1.2E-16 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS01020 51779c93d459e6c3c2403287ebf96b88 451 SUPERFAMILY SSF51984 3 89 6.54E-21 T 23-04-2016 SD28_RS01020 51779c93d459e6c3c2403287ebf96b88 451 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 2 451 31.446 T 23-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS01020 51779c93d459e6c3c2403287ebf96b88 451 SUPERFAMILY SSF53244 308 449 1.53E-36 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS01020 51779c93d459e6c3c2403287ebf96b88 451 Gene3D G3DSA:3.90.190.20 311 449 3.3E-40 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS01020 51779c93d459e6c3c2403287ebf96b88 451 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 4 447 1.0E-118 T 23-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS01020 51779c93d459e6c3c2403287ebf96b88 451 SUPERFAMILY SSF53623 90 304 1.16E-51 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS01020 51779c93d459e6c3c2403287ebf96b88 451 Gene3D G3DSA:3.40.50.720 3 90 2.7E-22 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS01730 1346e4409fc56a91c673c36a57b7ba93 295 Gene3D G3DSA:3.30.1490.20 99 171 4.6E-13 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 SD28_RS01730 1346e4409fc56a91c673c36a57b7ba93 295 PANTHER PTHR23132 1 295 1.9E-66 T 23-04-2016 SD28_RS01730 1346e4409fc56a91c673c36a57b7ba93 295 Gene3D G3DSA:3.40.50.20 3 86 2.5E-23 T 23-04-2016 IPR016185 Pre-ATP-grasp domain SD28_RS01730 1346e4409fc56a91c673c36a57b7ba93 295 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 65 76 - T 23-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS01730 1346e4409fc56a91c673c36a57b7ba93 295 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 238 265 - T 23-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS01730 1346e4409fc56a91c673c36a57b7ba93 295 Pfam PF01820 D-ala D-ala ligase N-terminus 5 88 2.1E-18 T 23-04-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS01730 1346e4409fc56a91c673c36a57b7ba93 295 Gene3D G3DSA:3.30.470.20 172 294 3.6E-40 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS01730 1346e4409fc56a91c673c36a57b7ba93 295 Gene3D G3DSA:3.30.470.20 88 98 3.6E-40 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS01730 1346e4409fc56a91c673c36a57b7ba93 295 SUPERFAMILY SSF52440 3 98 3.17E-22 T 23-04-2016 IPR016185 Pre-ATP-grasp domain SD28_RS01730 1346e4409fc56a91c673c36a57b7ba93 295 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 295 29.485 T 23-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS01730 1346e4409fc56a91c673c36a57b7ba93 295 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 294 6.5E-78 T 23-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS01730 1346e4409fc56a91c673c36a57b7ba93 295 PIRSF PIRSF039102 40 295 1.5E-68 T 23-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS01730 1346e4409fc56a91c673c36a57b7ba93 295 SUPERFAMILY SSF56059 98 291 3.21E-41 T 23-04-2016 SD28_RS01730 1346e4409fc56a91c673c36a57b7ba93 295 Pfam PF07478 D-ala D-ala ligase C-terminus 126 292 8.6E-47 T 23-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS06520 dd60fffb123c93fce64ed40a69ea26f6 329 PANTHER PTHR23024 62 329 6.7E-47 T 23-04-2016 SD28_RS06520 dd60fffb123c93fce64ed40a69ea26f6 329 PANTHER PTHR23024:SF202 62 329 6.7E-47 T 23-04-2016 SD28_RS06520 dd60fffb123c93fce64ed40a69ea26f6 329 Pfam PF07859 alpha/beta hydrolase fold 87 306 6.5E-21 T 23-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 SD28_RS06520 dd60fffb123c93fce64ed40a69ea26f6 329 SUPERFAMILY SSF53474 64 326 9.64E-49 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS06520 dd60fffb123c93fce64ed40a69ea26f6 329 Gene3D G3DSA:3.40.50.1820 55 326 2.1E-64 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS05555 e42501a2cc1be39ccf6abb3c36b89350 395 Gene3D G3DSA:3.90.1150.10 273 393 2.1E-36 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS05555 e42501a2cc1be39ccf6abb3c36b89350 395 Gene3D G3DSA:3.40.640.10 46 272 8.8E-71 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS05555 e42501a2cc1be39ccf6abb3c36b89350 395 SUPERFAMILY SSF53383 1 390 2.66E-103 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS05555 e42501a2cc1be39ccf6abb3c36b89350 395 Pfam PF00155 Aminotransferase class I and II 32 384 9.4E-67 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SD28_RS05555 e42501a2cc1be39ccf6abb3c36b89350 395 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 235 248 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 SD28_RS05555 e42501a2cc1be39ccf6abb3c36b89350 395 PANTHER PTHR11751:SF306 14 390 2.5E-127 T 23-04-2016 SD28_RS05555 e42501a2cc1be39ccf6abb3c36b89350 395 PANTHER PTHR11751 14 390 2.5E-127 T 23-04-2016 SD28_RS01965 78e4d32df1375f9b407265e64e278cb2 131 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 32 130 6.9E-32 T 23-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 SD28_RS01965 78e4d32df1375f9b407265e64e278cb2 131 PANTHER PTHR11058:SF10 1 131 9.0E-39 T 23-04-2016 SD28_RS01965 78e4d32df1375f9b407265e64e278cb2 131 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 5 131 16.936 T 23-04-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 SD28_RS01965 78e4d32df1375f9b407265e64e278cb2 131 PANTHER PTHR11058 1 131 9.0E-39 T 23-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 SD28_RS04400 02739cfd79b5707b40107b217d8c78ba 312 SUPERFAMILY SSF53328 2 195 3.4E-62 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SD28_RS04400 02739cfd79b5707b40107b217d8c78ba 312 Gene3D G3DSA:3.10.25.10 207 304 5.5E-29 T 23-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SD28_RS04400 02739cfd79b5707b40107b217d8c78ba 312 PANTHER PTHR11138 6 307 1.1E-102 T 23-04-2016 SD28_RS04400 02739cfd79b5707b40107b217d8c78ba 312 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 136 159 - T 23-04-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SD28_RS04400 02739cfd79b5707b40107b217d8c78ba 312 SUPERFAMILY SSF50486 205 307 3.77E-28 T 23-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 SD28_RS04400 02739cfd79b5707b40107b217d8c78ba 312 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 302 9.5E-88 T 23-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SD28_RS04400 02739cfd79b5707b40107b217d8c78ba 312 Pfam PF02911 Formyl transferase, C-terminal domain 204 301 5.8E-27 T 23-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SD28_RS04400 02739cfd79b5707b40107b217d8c78ba 312 Gene3D G3DSA:3.40.50.170 3 205 1.3E-68 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SD28_RS04400 02739cfd79b5707b40107b217d8c78ba 312 Pfam PF00551 Formyl transferase 8 182 2.4E-43 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SD28_RS04400 02739cfd79b5707b40107b217d8c78ba 312 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 4 304 33.195 T 23-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 SUPERFAMILY SSF55424 335 448 3.95E-27 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PANTHER PTHR22912:SF29 7 447 1.5E-135 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 339 438 5.4E-22 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 136 145 3.2E-56 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 3.2E-56 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 3.2E-56 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 396 411 3.2E-56 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 418 438 3.2E-56 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 334 355 3.2E-56 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 3.2E-56 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 3.2E-56 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 256 270 3.2E-56 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PANTHER PTHR22912 7 447 1.5E-135 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PIRSF PIRSF000350 1 453 2.6E-90 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 6.5E-28 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 6.5E-28 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 6.5E-28 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 133 151 6.5E-28 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 255 271 6.5E-28 T 23-04-2016 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 23-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 Gene3D G3DSA:3.30.390.30 332 444 9.1E-30 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 Gene3D G3DSA:3.50.50.60 6 136 2.6E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 317 1.2E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 SUPERFAMILY SSF51905 4 360 2.85E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS02690 b8ff6686e545df3bb3a9b4c42f32c0ed 467 Gene3D G3DSA:3.50.50.60 137 326 9.6E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS04725 cca0255f89f23ac6c9430167e6e899d2 92 Gene3D G3DSA:3.30.70.1500 8 86 1.4E-12 T 23-04-2016 SD28_RS04725 cca0255f89f23ac6c9430167e6e899d2 92 PIRSF PIRSF003113 2 91 7.5E-13 T 23-04-2016 IPR002634 BolA protein SD28_RS04725 cca0255f89f23ac6c9430167e6e899d2 92 SUPERFAMILY SSF82657 5 86 2.09E-12 T 23-04-2016 IPR002634 BolA protein SD28_RS04725 cca0255f89f23ac6c9430167e6e899d2 92 Pfam PF01722 BolA-like protein 22 86 2.3E-12 T 23-04-2016 IPR002634 BolA protein SD28_RS05190 16c71465031ae9bd9b00b020e678806c 337 Pfam PF01363 FYVE zinc finger 33 95 3.8E-19 T 23-04-2016 IPR000306 FYVE zinc finger GO:0046872 SD28_RS05190 16c71465031ae9bd9b00b020e678806c 337 SMART SM00064 29 97 5.7E-21 T 23-04-2016 IPR000306 FYVE zinc finger GO:0046872 SD28_RS05190 16c71465031ae9bd9b00b020e678806c 337 SUPERFAMILY SSF57903 33 104 2.16E-21 T 23-04-2016 IPR011011 Zinc finger, FYVE/PHD-type SD28_RS05190 16c71465031ae9bd9b00b020e678806c 337 Gene3D G3DSA:3.30.40.10 33 103 2.4E-22 T 23-04-2016 IPR013083 Zinc finger, RING/FYVE/PHD-type SD28_RS05190 16c71465031ae9bd9b00b020e678806c 337 PANTHER PTHR22835 20 92 3.6E-20 T 23-04-2016 SD28_RS00710 3402233232e16d006036dc017384efc2 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 136 1.6E-29 T 23-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 SD28_RS00710 3402233232e16d006036dc017384efc2 156 PANTHER PTHR33445 1 156 1.6E-38 T 23-04-2016 SD28_RS00710 3402233232e16d006036dc017384efc2 156 Gene3D G3DSA:1.20.5.620 63 122 2.3E-10 T 23-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain SD28_RS00710 3402233232e16d006036dc017384efc2 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 155 2.5E-43 T 23-04-2016 IPR005864 ATPase, F0 complex, subunit B, bacterial GO:0015078|GO:0015986|GO:0045263 SD28_RS00710 3402233232e16d006036dc017384efc2 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 156 12.693 T 23-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 SD28_RS00710 3402233232e16d006036dc017384efc2 156 SUPERFAMILY SSF81573 63 121 2.62E-10 T 23-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 SUPERFAMILY SSF54862 84 220 1.0E-37 T 23-04-2016 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 PANTHER PTHR11615:SF38 11 383 2.7E-131 T 23-04-2016 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 PANTHER PTHR11615:SF38 532 660 2.7E-131 T 23-04-2016 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 106 118 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 153 163 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 SUPERFAMILY SSF54292 10 82 6.85E-18 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 PANTHER PTHR11615 445 514 2.7E-131 T 23-04-2016 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 39 56 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 Gene3D G3DSA:3.40.228.10 366 411 5.4E-4 T 23-04-2016 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 SUPERFAMILY SSF53706 222 664 1.23E-67 T 23-04-2016 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 12 640 9.0E-176 T 23-04-2016 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 PANTHER PTHR11615 11 383 2.7E-131 T 23-04-2016 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 PANTHER PTHR11615 532 660 2.7E-131 T 23-04-2016 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 Gene3D G3DSA:3.40.50.740 489 664 5.7E-40 T 23-04-2016 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 Gene3D G3DSA:3.40.50.740 280 351 5.7E-40 T 23-04-2016 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 Gene3D G3DSA:3.10.20.30 3 66 6.5E-6 T 23-04-2016 IPR012675 Beta-grasp domain SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 8 84 5.3E-19 T 23-04-2016 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 SMART SM00929 91 131 4.1E-20 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 Pfam PF00384 Molybdopterin oxidoreductase 280 640 2.5E-33 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 91 127 3.3E-17 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 SD28_RS01995 e0e49cf092250f261cce4559f0862c49 789 PANTHER PTHR11615:SF38 445 514 2.7E-131 T 23-04-2016 SD28_RS00890 493b2f84dd47d3db32f4e60fc7a5a25c 192 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 88 188 2.1E-40 T 23-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 SD28_RS00890 493b2f84dd47d3db32f4e60fc7a5a25c 192 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 82 9.7E-34 T 23-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 SD28_RS00890 493b2f84dd47d3db32f4e60fc7a5a25c 192 PIRSF PIRSF000349 1 192 1.4E-83 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 SD28_RS00890 493b2f84dd47d3db32f4e60fc7a5a25c 192 PANTHER PTHR11404:SF8 1 192 2.5E-103 T 23-04-2016 SD28_RS00890 493b2f84dd47d3db32f4e60fc7a5a25c 192 Gene3D G3DSA:1.10.287.990 20 82 6.4E-24 T 23-04-2016 SD28_RS00890 493b2f84dd47d3db32f4e60fc7a5a25c 192 SUPERFAMILY SSF46609 1 83 1.7E-35 T 23-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 SD28_RS00890 493b2f84dd47d3db32f4e60fc7a5a25c 192 PRINTS PR01703 Manganese superoxide dismutase signature 117 125 4.5E-23 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 SD28_RS00890 493b2f84dd47d3db32f4e60fc7a5a25c 192 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.5E-23 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 SD28_RS00890 493b2f84dd47d3db32f4e60fc7a5a25c 192 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 4.5E-23 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 SD28_RS00890 493b2f84dd47d3db32f4e60fc7a5a25c 192 PRINTS PR01703 Manganese superoxide dismutase signature 154 166 4.5E-23 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 SD28_RS00890 493b2f84dd47d3db32f4e60fc7a5a25c 192 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.5E-23 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 SD28_RS00890 493b2f84dd47d3db32f4e60fc7a5a25c 192 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 156 163 - T 23-04-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 SD28_RS00890 493b2f84dd47d3db32f4e60fc7a5a25c 192 PANTHER PTHR11404 1 192 2.5E-103 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 SD28_RS00890 493b2f84dd47d3db32f4e60fc7a5a25c 192 SUPERFAMILY SSF54719 84 191 8.12E-44 T 23-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 SD28_RS01585 86cb506f2153dbf018cc4fe51cdc5b9f 177 Gene3D G3DSA:3.30.420.10 3 176 2.9E-63 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS01585 86cb506f2153dbf018cc4fe51cdc5b9f 177 PANTHER PTHR11046 1 177 1.7E-81 T 23-04-2016 SD28_RS01585 86cb506f2153dbf018cc4fe51cdc5b9f 177 PANTHER PTHR11046:SF1 1 177 1.7E-81 T 23-04-2016 SD28_RS01585 86cb506f2153dbf018cc4fe51cdc5b9f 177 Pfam PF00929 Exonuclease 8 167 3.4E-32 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III SD28_RS01585 86cb506f2153dbf018cc4fe51cdc5b9f 177 SUPERFAMILY SSF53098 1 176 6.96E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS01585 86cb506f2153dbf018cc4fe51cdc5b9f 177 SMART SM00479 6 177 2.4E-20 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III SD28_RS02465 dbec9fa89f8923c09abdc24e661a34f7 392 PANTHER PTHR11136:SF0 26 315 1.4E-53 T 23-04-2016 SD28_RS02465 dbec9fa89f8923c09abdc24e661a34f7 392 Gene3D G3DSA:3.40.1190.10 33 199 2.9E-52 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS02465 dbec9fa89f8923c09abdc24e661a34f7 392 PANTHER PTHR11136 26 315 1.4E-53 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 SD28_RS02465 dbec9fa89f8923c09abdc24e661a34f7 392 TIGRFAM TIGR01499 folC: bifunctional protein FolC 31 198 2.3E-53 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 SD28_RS02465 dbec9fa89f8923c09abdc24e661a34f7 392 SUPERFAMILY SSF53244 254 388 3.48E-18 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS02465 dbec9fa89f8923c09abdc24e661a34f7 392 Gene3D G3DSA:3.90.190.20 254 389 7.0E-21 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS02465 dbec9fa89f8923c09abdc24e661a34f7 392 SUPERFAMILY SSF53623 25 213 1.08E-51 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS02465 dbec9fa89f8923c09abdc24e661a34f7 392 Pfam PF08245 Mur ligase middle domain 41 184 5.2E-9 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS05720 744f93487e591add15947b3b66bb4dc3 424 Gene3D G3DSA:1.10.3860.10 17 422 1.4E-86 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05720 744f93487e591add15947b3b66bb4dc3 424 Pfam PF00375 Sodium:dicarboxylate symporter family 23 419 8.2E-97 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05720 744f93487e591add15947b3b66bb4dc3 424 SUPERFAMILY SSF118215 23 419 5.1E-86 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05720 744f93487e591add15947b3b66bb4dc3 424 PANTHER PTHR11958 11 422 1.4E-75 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05720 744f93487e591add15947b3b66bb4dc3 424 PRINTS PR00173 Glutamate-aspartate symporter signature 64 84 6.0E-23 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05720 744f93487e591add15947b3b66bb4dc3 424 PRINTS PR00173 Glutamate-aspartate symporter signature 96 121 6.0E-23 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05720 744f93487e591add15947b3b66bb4dc3 424 PRINTS PR00173 Glutamate-aspartate symporter signature 20 40 6.0E-23 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05720 744f93487e591add15947b3b66bb4dc3 424 PRINTS PR00173 Glutamate-aspartate symporter signature 212 231 6.0E-23 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05720 744f93487e591add15947b3b66bb4dc3 424 PRINTS PR00173 Glutamate-aspartate symporter signature 374 394 6.0E-23 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05720 744f93487e591add15947b3b66bb4dc3 424 PRINTS PR00173 Glutamate-aspartate symporter signature 347 366 6.0E-23 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 Pfam PF00378 Enoyl-CoA hydratase/isomerase 607 740 3.3E-16 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 307 404 6.9E-11 T 23-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 Gene3D G3DSA:3.40.50.720 114 307 2.2E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 PANTHER PTHR23309 118 573 2.7E-108 T 23-04-2016 SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 Pfam PF00887 Acyl CoA binding protein 5 81 3.5E-25 T 23-04-2016 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 PRINTS PR00689 Acyl-coA-binding protein signature 68 85 2.5E-9 T 23-04-2016 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 PRINTS PR00689 Acyl-coA-binding protein signature 47 62 2.5E-9 T 23-04-2016 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 PRINTS PR00689 Acyl-coA-binding protein signature 24 42 2.5E-9 T 23-04-2016 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 Gene3D G3DSA:3.90.226.10 600 777 1.5E-26 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 SUPERFAMILY SSF48179 456 570 1.96E-12 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 121 304 9.4E-45 T 23-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 SUPERFAMILY SSF48179 305 422 3.83E-18 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 SUPERFAMILY SSF51735 119 305 1.49E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 SUPERFAMILY SSF52096 598 897 6.59E-35 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 SUPERFAMILY SSF47027 3 82 1.96E-24 T 23-04-2016 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 Gene3D G3DSA:1.20.80.10 1 83 3.7E-27 T 23-04-2016 IPR014352 FERM/acyl-CoA-binding protein, 3-helical bundle SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 Gene3D G3DSA:1.10.1040.10 308 405 6.9E-13 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 Gene3D G3DSA:1.10.1040.10 459 539 6.4E-7 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 SD28_RS06830 cc1bd7745285e90991f2579db823bf80 900 PANTHER PTHR23309:SF2 118 573 2.7E-108 T 23-04-2016 SD28_RS07655 f1d8f71ba5ac0564f61b5558543ac845 159 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 3 159 17.146 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 SD28_RS07655 f1d8f71ba5ac0564f61b5558543ac845 159 PANTHER PTHR33695 2 153 7.2E-50 T 23-04-2016 SD28_RS07655 f1d8f71ba5ac0564f61b5558543ac845 159 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 134 150 1.1E-17 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 SD28_RS07655 f1d8f71ba5ac0564f61b5558543ac845 159 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 49 57 1.1E-17 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 SD28_RS07655 f1d8f71ba5ac0564f61b5558543ac845 159 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 98 113 1.1E-17 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 SD28_RS07655 f1d8f71ba5ac0564f61b5558543ac845 159 Pfam PF01252 Signal peptidase (SPase) II 12 153 4.7E-35 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 SD28_RS07655 f1d8f71ba5ac0564f61b5558543ac845 159 PANTHER PTHR33695:SF1 2 153 7.2E-50 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 SD28_RS07655 f1d8f71ba5ac0564f61b5558543ac845 159 TIGRFAM TIGR00077 lspA: signal peptidase II 6 156 1.1E-37 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 SD28_RS07655 f1d8f71ba5ac0564f61b5558543ac845 159 ProSitePatterns PS00855 Signal peptidases II signature. 101 113 - T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 SD28_RS04680 925449a46a55f7b285e4cefdd643d608 411 PANTHER PTHR10996 1 369 3.4E-203 T 23-04-2016 SD28_RS04680 925449a46a55f7b285e4cefdd643d608 411 Gene3D G3DSA:3.40.50.720 8 119 5.3E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS04680 925449a46a55f7b285e4cefdd643d608 411 SUPERFAMILY SSF52283 8 135 6.99E-44 T 23-04-2016 SD28_RS04680 925449a46a55f7b285e4cefdd643d608 411 Gene3D G3DSA:3.30.70.260 323 410 2.2E-24 T 23-04-2016 SD28_RS04680 925449a46a55f7b285e4cefdd643d608 411 SUPERFAMILY SSF51735 108 295 4.5E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS04680 925449a46a55f7b285e4cefdd643d608 411 SUPERFAMILY SSF55021 333 410 1.29E-16 T 23-04-2016 SD28_RS04680 925449a46a55f7b285e4cefdd643d608 411 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site SD28_RS04680 925449a46a55f7b285e4cefdd643d608 411 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 23-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 SD28_RS04680 925449a46a55f7b285e4cefdd643d608 411 Gene3D G3DSA:3.40.50.720 120 297 1.2E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS04680 925449a46a55f7b285e4cefdd643d608 411 PANTHER PTHR10996:SF18 1 369 3.4E-203 T 23-04-2016 IPR029015 D-3-phosphoglycerate dehydrogenase, type2 GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|UniPathway: UPA00135 SD28_RS04680 925449a46a55f7b285e4cefdd643d608 411 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site SD28_RS04680 925449a46a55f7b285e4cefdd643d608 411 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 13 326 4.2E-36 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 SD28_RS04680 925449a46a55f7b285e4cefdd643d608 411 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 119 294 1.7E-50 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 SD28_RS06245 e9c1764f7f2c3981e7b3f720dc09f58f 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 23-04-2016 IPR019844 Cold-shock conserved site SD28_RS06245 e9c1764f7f2c3981e7b3f720dc09f58f 67 PRINTS PR00050 Cold shock protein signature 40 58 5.8E-10 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 SD28_RS06245 e9c1764f7f2c3981e7b3f720dc09f58f 67 PRINTS PR00050 Cold shock protein signature 7 22 5.8E-10 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 SD28_RS06245 e9c1764f7f2c3981e7b3f720dc09f58f 67 SMART SM00357 6 67 1.4E-18 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 SD28_RS06245 e9c1764f7f2c3981e7b3f720dc09f58f 67 PANTHER PTHR11544 1 67 3.4E-14 T 23-04-2016 SD28_RS06245 e9c1764f7f2c3981e7b3f720dc09f58f 67 SUPERFAMILY SSF50249 3 66 3.81E-19 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS06245 e9c1764f7f2c3981e7b3f720dc09f58f 67 PIRSF PIRSF002599 1 67 4.9E-18 T 23-04-2016 IPR012156 Cold shock, CspA GO:0003676 SD28_RS06245 e9c1764f7f2c3981e7b3f720dc09f58f 67 Pfam PF00313 'Cold-shock' DNA-binding domain 6 65 1.0E-22 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 SD28_RS06245 e9c1764f7f2c3981e7b3f720dc09f58f 67 Gene3D G3DSA:2.40.50.140 6 65 1.4E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS00055 f7867cabbc42860a0b64644b1be2527e 130 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 1.1E-8 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS00055 f7867cabbc42860a0b64644b1be2527e 130 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS00055 f7867cabbc42860a0b64644b1be2527e 130 Gene3D G3DSA:3.30.700.10 8 129 1.7E-26 T 23-04-2016 SD28_RS00055 f7867cabbc42860a0b64644b1be2527e 130 SUPERFAMILY SSF54523 8 124 5.76E-20 T 23-04-2016 SD28_RS00055 f7867cabbc42860a0b64644b1be2527e 130 Pfam PF13633 Prokaryotic N-terminal methylation site 6 31 1.6E-10 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS00055 f7867cabbc42860a0b64644b1be2527e 130 Pfam PF00114 Pilin (bacterial filament) 37 129 1.4E-6 T 23-04-2016 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 SD28_RS03435 e6af107dd0c88f22e637d34014c08be9 700 Gene3D G3DSA:3.40.50.980 215 347 2.2E-19 T 23-04-2016 SD28_RS03435 e6af107dd0c88f22e637d34014c08be9 700 Pfam PF00501 AMP-binding enzyme 215 586 3.8E-68 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 SD28_RS03435 e6af107dd0c88f22e637d34014c08be9 700 PANTHER PTHR24096:SF211 218 686 4.4E-104 T 23-04-2016 SD28_RS03435 e6af107dd0c88f22e637d34014c08be9 700 SUPERFAMILY SSF56801 193 696 4.58E-86 T 23-04-2016 SD28_RS03435 e6af107dd0c88f22e637d34014c08be9 700 Gene3D G3DSA:2.30.38.10 506 583 1.6E-14 T 23-04-2016 SD28_RS03435 e6af107dd0c88f22e637d34014c08be9 700 PANTHER PTHR24096 218 686 4.4E-104 T 23-04-2016 SD28_RS03435 e6af107dd0c88f22e637d34014c08be9 700 Gene3D G3DSA:3.40.50.980 348 505 4.9E-40 T 23-04-2016 SD28_RS03435 e6af107dd0c88f22e637d34014c08be9 700 ProSitePatterns PS00455 Putative AMP-binding domain signature. 341 352 - T 23-04-2016 IPR020845 AMP-binding, conserved site SD28_RS01370 c18b7e71c828aef1fd8b71a3ccc9c3d9 177 Pfam PF13508 Acetyltransferase (GNAT) domain 52 145 1.2E-6 T 23-04-2016 IPR000182 GNAT domain GO:0008080 SD28_RS01370 c18b7e71c828aef1fd8b71a3ccc9c3d9 177 Gene3D G3DSA:3.40.630.30 23 153 2.3E-13 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase SD28_RS01370 c18b7e71c828aef1fd8b71a3ccc9c3d9 177 SUPERFAMILY SSF55729 14 154 3.66E-12 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase SD28_RS02940 aa6b2bda400002e41484d9022a120e10 173 SUPERFAMILY SSF52821 1 152 8.51E-24 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS02940 aa6b2bda400002e41484d9022a120e10 173 Gene3D G3DSA:3.40.250.10 2 103 7.3E-20 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS02940 aa6b2bda400002e41484d9022a120e10 173 SMART SM00450 7 100 4.8E-15 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS02940 aa6b2bda400002e41484d9022a120e10 173 Pfam PF00581 Rhodanese-like domain 9 96 5.0E-12 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS02940 aa6b2bda400002e41484d9022a120e10 173 Pfam PF11127 Protein of unknown function (DUF2892) 113 164 3.3E-9 T 23-04-2016 IPR021309 Protein of unknown function DUF2892 SD28_RS03320 440c1df57421128d2f59f2a83fc8f549 397 SUPERFAMILY SSF103473 4 390 2.35E-58 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS03320 440c1df57421128d2f59f2a83fc8f549 397 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 4 379 1.2E-71 T 23-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 SD28_RS03320 440c1df57421128d2f59f2a83fc8f549 397 Pfam PF07690 Major Facilitator Superfamily 16 351 1.3E-42 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS03320 440c1df57421128d2f59f2a83fc8f549 397 PANTHER PTHR23502:SF19 1 392 4.0E-79 T 23-04-2016 SD28_RS03320 440c1df57421128d2f59f2a83fc8f549 397 Gene3D G3DSA:1.20.1250.20 209 388 1.5E-7 T 23-04-2016 SD28_RS03320 440c1df57421128d2f59f2a83fc8f549 397 PANTHER PTHR23502 1 392 4.0E-79 T 23-04-2016 SD28_RS03320 440c1df57421128d2f59f2a83fc8f549 397 Gene3D G3DSA:1.20.1250.20 8 191 2.2E-31 T 23-04-2016 SD28_RS02295 211b906f8c9707020e97d43a42a50433 157 Pfam PF00177 Ribosomal protein S7p/S5e 1 150 6.6E-65 T 23-04-2016 IPR023798 Ribosomal protein S7 domain SD28_RS02295 211b906f8c9707020e97d43a42a50433 157 Gene3D G3DSA:1.10.455.10 7 157 1.8E-64 T 23-04-2016 IPR023798 Ribosomal protein S7 domain SD28_RS02295 211b906f8c9707020e97d43a42a50433 157 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 157 35.909 T 23-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 SD28_RS02295 211b906f8c9707020e97d43a42a50433 157 SUPERFAMILY SSF47973 1 150 3.66E-58 T 23-04-2016 IPR023798 Ribosomal protein S7 domain SD28_RS02295 211b906f8c9707020e97d43a42a50433 157 PIRSF PIRSF002122 2 157 8.2E-59 T 23-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 SD28_RS02295 211b906f8c9707020e97d43a42a50433 157 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 23-04-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 SD28_RS02295 211b906f8c9707020e97d43a42a50433 157 PANTHER PTHR11205 1 157 1.7E-85 T 23-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 SD28_RS02295 211b906f8c9707020e97d43a42a50433 157 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 157 6.2E-69 T 23-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 SD28_RS06915 bea3b7b74301fa9d02416a3044cac81c 230 SUPERFAMILY SSF54768 107 221 5.81E-21 T 23-04-2016 SD28_RS06915 bea3b7b74301fa9d02416a3044cac81c 230 PANTHER PTHR11207 7 214 1.7E-61 T 23-04-2016 SD28_RS06915 bea3b7b74301fa9d02416a3044cac81c 230 Gene3D G3DSA:3.30.160.20 152 222 3.0E-18 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain SD28_RS06915 bea3b7b74301fa9d02416a3044cac81c 230 SMART SM00535 20 146 7.8E-41 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 SD28_RS06915 bea3b7b74301fa9d02416a3044cac81c 230 Gene3D G3DSA:1.10.1520.10 6 145 7.4E-45 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 SD28_RS06915 bea3b7b74301fa9d02416a3044cac81c 230 ProSitePatterns PS00517 Ribonuclease III family signature. 37 45 - T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 SD28_RS06915 bea3b7b74301fa9d02416a3044cac81c 230 Pfam PF14622 Ribonuclease-III-like 18 137 5.6E-29 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 SD28_RS06915 bea3b7b74301fa9d02416a3044cac81c 230 Pfam PF00035 Double-stranded RNA binding motif 155 218 2.0E-6 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain SD28_RS06915 bea3b7b74301fa9d02416a3044cac81c 230 Hamap MF_00104 Ribonuclease 3 [rnc]. 8 218 26.563 T 23-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 SD28_RS06915 bea3b7b74301fa9d02416a3044cac81c 230 SUPERFAMILY SSF69065 4 145 7.32E-45 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 SD28_RS06915 bea3b7b74301fa9d02416a3044cac81c 230 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 10 219 1.9E-64 T 23-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 SD28_RS06915 bea3b7b74301fa9d02416a3044cac81c 230 SMART SM00358 154 222 3.1E-7 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain SD28_RS06815 a2b70271e342a4d13f71e6aff5628b93 115 SUPERFAMILY SSF52833 1 113 4.08E-29 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS06815 a2b70271e342a4d13f71e6aff5628b93 115 PANTHER PTHR30041:SF4 1 112 1.2E-25 T 23-04-2016 SD28_RS06815 a2b70271e342a4d13f71e6aff5628b93 115 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 2 112 6.7E-33 T 23-04-2016 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 SD28_RS06815 a2b70271e342a4d13f71e6aff5628b93 115 Pfam PF03960 ArsC family 4 111 1.2E-12 T 23-04-2016 IPR006660 Arsenate reductase-like SD28_RS06815 a2b70271e342a4d13f71e6aff5628b93 115 PANTHER PTHR30041 1 112 1.2E-25 T 23-04-2016 SD28_RS06815 a2b70271e342a4d13f71e6aff5628b93 115 Gene3D G3DSA:3.40.30.10 1 113 1.6E-37 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS05095 d7af954712a5298fe5da1a1bfb1555d9 247 PANTHER PTHR10953:SF145 185 247 6.8E-85 T 23-04-2016 SD28_RS05095 d7af954712a5298fe5da1a1bfb1555d9 247 PANTHER PTHR10953:SF145 7 159 6.8E-85 T 23-04-2016 SD28_RS05095 d7af954712a5298fe5da1a1bfb1555d9 247 Pfam PF00899 ThiF family 12 209 1.2E-41 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 SD28_RS05095 d7af954712a5298fe5da1a1bfb1555d9 247 PANTHER PTHR10953 185 247 6.8E-85 T 23-04-2016 SD28_RS05095 d7af954712a5298fe5da1a1bfb1555d9 247 PANTHER PTHR10953 7 159 6.8E-85 T 23-04-2016 SD28_RS05095 d7af954712a5298fe5da1a1bfb1555d9 247 Gene3D G3DSA:3.40.50.720 8 243 1.2E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05095 d7af954712a5298fe5da1a1bfb1555d9 247 SUPERFAMILY SSF69572 8 243 8.37E-63 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 SUPERFAMILY SSF52540 9 226 8.52E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 PANTHER PTHR23115:SF151 1 393 9.9E-273 T 23-04-2016 SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 2.8E-15 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.7E-24 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.7E-24 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.7E-24 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.7E-24 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.7E-24 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 Gene3D G3DSA:3.40.50.300 4 211 5.8E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 394 5.0E-236 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 SUPERFAMILY SSF50465 298 393 9.21E-37 T 23-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 SUPERFAMILY SSF50447 205 301 9.03E-32 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 4.1E-59 T 23-04-2016 SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 PANTHER PTHR23115 1 393 9.9E-273 T 23-04-2016 SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 Gene3D G3DSA:2.40.30.10 300 393 4.0E-47 T 23-04-2016 SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 2.0E-34 T 23-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 61.356 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 Pfam PF03144 Elongation factor Tu domain 2 225 294 1.0E-18 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 Gene3D G3DSA:2.40.30.10 212 298 2.2E-38 T 23-04-2016 SD28_RS02565 11c3bf6202c2196e66711d22bdf76df6 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 Pfam PF00122 E1-E2 ATPase 185 407 4.4E-60 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 SUPERFAMILY SSF55008 3 73 2.36E-6 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 Pfam PF00702 haloacid dehalogenase-like hydrolase 413 630 7.0E-40 T 23-04-2016 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 147 720 6.4E-121 T 23-04-2016 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 PANTHER PTHR24093 10 721 6.4E-218 T 23-04-2016 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 SUPERFAMILY SSF81660 418 545 1.6E-21 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 Gene3D G3DSA:3.30.70.100 8 73 1.5E-4 T 23-04-2016 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 163 720 1.0E-174 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 SUPERFAMILY SSF81653 221 315 1.06E-21 T 23-04-2016 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 416 430 6.1E-21 T 23-04-2016 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 265 279 6.1E-21 T 23-04-2016 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 564 574 6.1E-21 T 23-04-2016 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 617 636 6.1E-21 T 23-04-2016 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 641 653 6.1E-21 T 23-04-2016 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 PANTHER PTHR24093:SF317 10 721 6.4E-218 T 23-04-2016 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 Gene3D G3DSA:2.70.150.10 163 316 2.0E-25 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 PRINTS PR00941 Cadmium-transporting ATPase signature 300 314 3.9E-7 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 PRINTS PR00941 Cadmium-transporting ATPase signature 10 19 3.9E-7 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 PRINTS PR00941 Cadmium-transporting ATPase signature 198 218 3.9E-7 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 PRINTS PR00941 Cadmium-transporting ATPase signature 281 297 3.9E-7 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 SUPERFAMILY SSF81665 163 217 1.7E-21 T 23-04-2016 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 SUPERFAMILY SSF81665 316 410 1.7E-21 T 23-04-2016 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 SUPERFAMILY SSF81665 667 715 1.7E-21 T 23-04-2016 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 Gene3D G3DSA:3.40.1110.10 431 543 1.8E-14 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 SUPERFAMILY SSF56784 415 434 8.08E-52 T 23-04-2016 IPR023214 HAD-like domain SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 SUPERFAMILY SSF56784 532 718 8.08E-52 T 23-04-2016 IPR023214 HAD-like domain SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 186 700 2.9E-82 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 418 424 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 Gene3D G3DSA:3.40.50.1000 391 430 2.1E-46 T 23-04-2016 IPR023214 HAD-like domain SD28_RS00110 41069e3978c4745728ea1db709d0de60 723 Gene3D G3DSA:3.40.50.1000 544 686 2.1E-46 T 23-04-2016 IPR023214 HAD-like domain SD28_RS07395 f52e1329cdde57fc48bc9a1ca0e3f9ca 153 Gene3D G3DSA:1.10.10.10 69 150 3.2E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS07395 f52e1329cdde57fc48bc9a1ca0e3f9ca 153 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 120 126 - T 23-04-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 SD28_RS07395 f52e1329cdde57fc48bc9a1ca0e3f9ca 153 SUPERFAMILY SSF53155 2 75 1.22E-9 T 23-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 SD28_RS07395 f52e1329cdde57fc48bc9a1ca0e3f9ca 153 PANTHER PTHR10815 1 149 2.2E-48 T 23-04-2016 SD28_RS07395 f52e1329cdde57fc48bc9a1ca0e3f9ca 153 SUPERFAMILY SSF46767 69 150 1.96E-29 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 SD28_RS07395 f52e1329cdde57fc48bc9a1ca0e3f9ca 153 PANTHER PTHR10815:SF5 1 149 2.2E-48 T 23-04-2016 SD28_RS07395 f52e1329cdde57fc48bc9a1ca0e3f9ca 153 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 70 149 1.1E-33 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 SD28_RS07395 f52e1329cdde57fc48bc9a1ca0e3f9ca 153 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 71 149 3.7E-29 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 SD28_RS05065 6cdabea05f200fee77e190398dc8c969 409 Gene3D G3DSA:3.40.30.10 2 78 2.4E-21 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS05065 6cdabea05f200fee77e190398dc8c969 409 Gene3D G3DSA:1.10.620.20 98 378 3.9E-89 T 23-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 SD28_RS05065 6cdabea05f200fee77e190398dc8c969 409 PANTHER PTHR23409:SF18 101 405 9.1E-59 T 23-04-2016 SD28_RS05065 6cdabea05f200fee77e190398dc8c969 409 SUPERFAMILY SSF52833 3 78 1.09E-14 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS05065 6cdabea05f200fee77e190398dc8c969 409 SUPERFAMILY SSF47240 98 407 1.22E-82 T 23-04-2016 IPR009078 Ferritin-like superfamily SD28_RS05065 6cdabea05f200fee77e190398dc8c969 409 Pfam PF00268 Ribonucleotide reductase, small chain 98 370 1.3E-68 T 23-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 SD28_RS05065 6cdabea05f200fee77e190398dc8c969 409 PRINTS PR00160 Glutaredoxin signature 3 21 1.8E-7 T 23-04-2016 IPR014025 Glutaredoxin subgroup SD28_RS05065 6cdabea05f200fee77e190398dc8c969 409 PRINTS PR00160 Glutaredoxin signature 67 80 1.8E-7 T 23-04-2016 IPR014025 Glutaredoxin subgroup SD28_RS05065 6cdabea05f200fee77e190398dc8c969 409 PRINTS PR00160 Glutaredoxin signature 53 66 1.8E-7 T 23-04-2016 IPR014025 Glutaredoxin subgroup SD28_RS05065 6cdabea05f200fee77e190398dc8c969 409 PANTHER PTHR23409 101 405 9.1E-59 T 23-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 SD28_RS05065 6cdabea05f200fee77e190398dc8c969 409 Pfam PF00462 Glutaredoxin 3 70 7.0E-12 T 23-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 191 210 1.8E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 130 1.8E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 1.8E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 PANTHER PTHR24322 191 223 1.5E-61 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 PANTHER PTHR24322 43 175 1.5E-61 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 178 206 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 Gene3D G3DSA:3.40.50.720 34 284 1.1E-78 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 48 282 2.1E-57 T 23-04-2016 SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 SUPERFAMILY SSF51735 37 284 1.34E-75 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 PANTHER PTHR24322:SF105 191 223 1.5E-61 T 23-04-2016 SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 PANTHER PTHR24322:SF105 43 175 1.5E-61 T 23-04-2016 SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 210 9.1E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 246 266 9.1E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 229 9.1E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 130 9.1E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 40 57 9.1E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05920 f83d7955a47cd508762cf89ab45e774d 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 181 9.1E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 PRINTS PR00097 Anthranilate synthase component II signature 97 105 1.1E-29 T 23-04-2016 SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 PRINTS PR00097 Anthranilate synthase component II signature 72 83 1.1E-29 T 23-04-2016 SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 PRINTS PR00097 Anthranilate synthase component II signature 44 53 1.1E-29 T 23-04-2016 SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.1E-29 T 23-04-2016 SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 PRINTS PR00097 Anthranilate synthase component II signature 118 130 1.1E-29 T 23-04-2016 SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 PRINTS PR00097 Anthranilate synthase component II signature 161 174 1.1E-29 T 23-04-2016 SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 PANTHER PTHR11922 1 184 2.7E-52 T 23-04-2016 SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 183 8.0E-48 T 23-04-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 SUPERFAMILY SSF52317 1 184 3.67E-51 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 Pfam PF00117 Glutamine amidotransferase class-I 4 182 1.3E-47 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 Gene3D G3DSA:3.40.50.880 1 183 8.7E-55 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 PANTHER PTHR11922:SF7 1 184 2.7E-52 T 23-04-2016 SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 PRINTS PR00096 Glutamine amidotransferase superfamily signature 72 83 3.1E-13 T 23-04-2016 SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 PRINTS PR00096 Glutamine amidotransferase superfamily signature 161 174 3.1E-13 T 23-04-2016 SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 PRINTS PR00096 Glutamine amidotransferase superfamily signature 44 53 3.1E-13 T 23-04-2016 SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 41 55 3.5E-8 T 23-04-2016 SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 72 88 3.5E-8 T 23-04-2016 SD28_RS04440 cda574a4cfc074d51cd84445aeadaaf0 184 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 89 106 3.5E-8 T 23-04-2016 SD28_RS06055 8cb8874b9b405f642eeb86d2a84bca8a 60 PANTHER PTHR35534 1 60 2.1E-28 T 23-04-2016 SD28_RS06055 8cb8874b9b405f642eeb86d2a84bca8a 60 Pfam PF01783 Ribosomal L32p protein family 2 55 1.2E-21 T 23-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 SD28_RS06055 8cb8874b9b405f642eeb86d2a84bca8a 60 SUPERFAMILY SSF57829 2 56 3.91E-19 T 23-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 SD28_RS06055 8cb8874b9b405f642eeb86d2a84bca8a 60 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 1.1E-20 T 23-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 SD28_RS06055 8cb8874b9b405f642eeb86d2a84bca8a 60 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 18.064 T 23-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 SD28_RS00575 8dad196e7d753613d7ccb536dea02248 51 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 15.449 T 23-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS00575 8dad196e7d753613d7ccb536dea02248 51 Pfam PF00471 Ribosomal protein L33 3 49 1.8E-18 T 23-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS00575 8dad196e7d753613d7ccb536dea02248 51 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 23-04-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS00575 8dad196e7d753613d7ccb536dea02248 51 SUPERFAMILY SSF57829 1 49 6.71E-19 T 23-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 SD28_RS00575 8dad196e7d753613d7ccb536dea02248 51 PANTHER PTHR15238 1 51 2.4E-20 T 23-04-2016 SD28_RS00575 8dad196e7d753613d7ccb536dea02248 51 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 2 51 6.5E-23 T 23-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06940 8e5665b7dd105b711e3ec9b81eef3054 431 PANTHER PTHR23417 201 431 2.3E-107 T 23-04-2016 SD28_RS06940 8e5665b7dd105b711e3ec9b81eef3054 431 PANTHER PTHR23417 141 151 2.3E-107 T 23-04-2016 SD28_RS06940 8e5665b7dd105b711e3ec9b81eef3054 431 PANTHER PTHR23417 9 122 2.3E-107 T 23-04-2016 SD28_RS06940 8e5665b7dd105b711e3ec9b81eef3054 431 Pfam PF00534 Glycosyl transferases group 1 260 411 4.0E-10 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 SD28_RS06940 8e5665b7dd105b711e3ec9b81eef3054 431 SUPERFAMILY SSF53756 67 430 9.42E-13 T 23-04-2016 SD28_RS06940 8e5665b7dd105b711e3ec9b81eef3054 431 PANTHER PTHR23417:SF2 201 431 2.3E-107 T 23-04-2016 SD28_RS06940 8e5665b7dd105b711e3ec9b81eef3054 431 PANTHER PTHR23417:SF2 141 151 2.3E-107 T 23-04-2016 SD28_RS06940 8e5665b7dd105b711e3ec9b81eef3054 431 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 43 221 1.2E-57 T 23-04-2016 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675|UniPathway: UPA00958 SD28_RS06940 8e5665b7dd105b711e3ec9b81eef3054 431 PANTHER PTHR23417:SF2 9 122 2.3E-107 T 23-04-2016 SD28_RS07070 d26e2911c9f2b0ca8f32645862bd563e 266 Gene3D G3DSA:3.30.930.10 9 203 6.2E-42 T 23-04-2016 SD28_RS07070 d26e2911c9f2b0ca8f32645862bd563e 266 PANTHER PTHR12835 3 254 8.0E-34 T 23-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 SD28_RS07070 d26e2911c9f2b0ca8f32645862bd563e 266 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 19 242 1.1E-34 T 23-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 SD28_RS07070 d26e2911c9f2b0ca8f32645862bd563e 266 SUPERFAMILY SSF55681 9 205 1.82E-41 T 23-04-2016 SD28_RS07070 d26e2911c9f2b0ca8f32645862bd563e 266 Pfam PF03099 Biotin/lipoate A/B protein ligase family 23 150 8.4E-13 T 23-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 SD28_RS01220 2be95afd7ae4340acf56e0dce77c1ac8 203 Pfam PF09850 Type VI secretion system protein DotU 23 156 2.9E-15 T 23-04-2016 IPR017732 Type IV / VI secretion system, DotU SD28_RS00165 f3c403066e005aeb6aa6cda39037d521 206 Gene3D G3DSA:1.10.10.60 187 203 3.5E-5 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 SD28_RS00165 f3c403066e005aeb6aa6cda39037d521 206 Pfam PF13309 HTH domain 142 203 2.4E-15 T 23-04-2016 SD28_RS00165 f3c403066e005aeb6aa6cda39037d521 206 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 1 108 1.0E-39 T 23-04-2016 IPR013559 YheO-like SD28_RS00165 f3c403066e005aeb6aa6cda39037d521 206 Pfam PF08348 YheO-like PAS domain 5 112 1.1E-21 T 23-04-2016 IPR013559 YheO-like SD28_RS00165 f3c403066e005aeb6aa6cda39037d521 206 PANTHER PTHR35568:SF1 5 203 1.5E-37 T 23-04-2016 SD28_RS00165 f3c403066e005aeb6aa6cda39037d521 206 PANTHER PTHR35568 5 203 1.5E-37 T 23-04-2016 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 SMART SM00863 644 687 5.3E-25 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 Gene3D G3DSA:3.30.930.10 2 241 1.5E-116 T 23-04-2016 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 SUPERFAMILY SSF101353 246 452 1.96E-65 T 23-04-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 6 843 0.0 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 PRINTS PR00980 Alanyl-tRNA synthetase signature 226 239 3.4E-33 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 PRINTS PR00980 Alanyl-tRNA synthetase signature 272 288 3.4E-33 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 PRINTS PR00980 Alanyl-tRNA synthetase signature 75 86 3.4E-33 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 PRINTS PR00980 Alanyl-tRNA synthetase signature 296 309 3.4E-33 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 PRINTS PR00980 Alanyl-tRNA synthetase signature 199 210 3.4E-33 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 SUPERFAMILY SSF55186 543 698 2.09E-47 T 23-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 PANTHER PTHR11777 1 865 0.0 T 23-04-2016 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 644 687 2.0E-21 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 Pfam PF01411 tRNA synthetases class II (A) 6 546 6.4E-223 T 23-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 SUPERFAMILY SSF50447 444 543 2.4E-19 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 SUPERFAMILY SSF55681 3 245 1.14E-110 T 23-04-2016 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 Pfam PF02272 DHHA1 domain 787 858 9.8E-14 T 23-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 PANTHER PTHR11777:SF9 1 865 0.0 T 23-04-2016 SD28_RS05405 327e5de4355b6c489e0f8f69fae1a40d 865 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 864 182.961 T 23-04-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 SD28_RS01340 db8aef90ebe6e69c59dda9f28e8371be 367 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 119 4.2E-20 T 23-04-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS01340 db8aef90ebe6e69c59dda9f28e8371be 367 Gene3D G3DSA:3.10.150.10 123 250 1.2E-30 T 23-04-2016 SD28_RS01340 db8aef90ebe6e69c59dda9f28e8371be 367 Gene3D G3DSA:3.10.150.10 1 117 1.1E-20 T 23-04-2016 SD28_RS01340 db8aef90ebe6e69c59dda9f28e8371be 367 Gene3D G3DSA:3.10.150.10 251 367 6.3E-33 T 23-04-2016 SD28_RS01340 db8aef90ebe6e69c59dda9f28e8371be 367 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 248 365 4.0E-27 T 23-04-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS01340 db8aef90ebe6e69c59dda9f28e8371be 367 PANTHER PTHR30478 3 367 7.8E-100 T 23-04-2016 SD28_RS01340 db8aef90ebe6e69c59dda9f28e8371be 367 SMART SM00480 17 363 1.6E-90 T 23-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS01340 db8aef90ebe6e69c59dda9f28e8371be 367 SUPERFAMILY SSF55979 247 367 5.83E-32 T 23-04-2016 SD28_RS01340 db8aef90ebe6e69c59dda9f28e8371be 367 Pfam PF02767 DNA polymerase III beta subunit, central domain 130 245 4.4E-31 T 23-04-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS01340 db8aef90ebe6e69c59dda9f28e8371be 367 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 3.8E-85 T 23-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS01340 db8aef90ebe6e69c59dda9f28e8371be 367 PIRSF PIRSF000804 1 367 6.8E-101 T 23-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS01340 db8aef90ebe6e69c59dda9f28e8371be 367 SUPERFAMILY SSF55979 1 116 9.11E-22 T 23-04-2016 SD28_RS01340 db8aef90ebe6e69c59dda9f28e8371be 367 SUPERFAMILY SSF55979 126 246 3.93E-25 T 23-04-2016 SD28_RS05210 7dcfb1ef8d9b7931e3a560da52eb4b99 468 SUPERFAMILY SSF51556 3 465 2.01E-138 T 23-04-2016 IPR032466 Metal-dependent hydrolase SD28_RS05210 7dcfb1ef8d9b7931e3a560da52eb4b99 468 Gene3D G3DSA:1.10.2020.10 47 146 2.8E-30 T 23-04-2016 IPR023177 Uronate isomerase, domain 2 GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248|UniPathway: UPA00246 SD28_RS05210 7dcfb1ef8d9b7931e3a560da52eb4b99 468 PANTHER PTHR30068:SF4 4 468 1.8E-128 T 23-04-2016 SD28_RS05210 7dcfb1ef8d9b7931e3a560da52eb4b99 468 PANTHER PTHR30068 4 468 1.8E-128 T 23-04-2016 SD28_RS05210 7dcfb1ef8d9b7931e3a560da52eb4b99 468 Gene3D G3DSA:3.20.20.140 4 45 9.5E-133 T 23-04-2016 SD28_RS05210 7dcfb1ef8d9b7931e3a560da52eb4b99 468 Gene3D G3DSA:3.20.20.140 147 466 9.5E-133 T 23-04-2016 SD28_RS05210 7dcfb1ef8d9b7931e3a560da52eb4b99 468 Pfam PF02614 Glucuronate isomerase 15 463 1.1E-83 T 23-04-2016 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248|UniPathway: UPA00246 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 SUPERFAMILY SSF52440 327 431 2.88E-24 T 23-04-2016 IPR016185 Pre-ATP-grasp domain SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 ProSitePatterns PS01058 SAICAR synthetase signature 2. 204 212 - T 23-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 Gene3D G3DSA:3.40.50.20 329 423 9.9E-24 T 23-04-2016 IPR016185 Pre-ATP-grasp domain SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 SUPERFAMILY SSF51246 659 750 5.26E-16 T 23-04-2016 IPR011054 Rudiment single hybrid motif SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 PANTHER PTHR11609:SF9 11 505 2.0E-152 T 23-04-2016 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 SMART SM01209 431 626 1.6E-79 T 23-04-2016 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 620 627 - T 23-04-2016 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 328 750 34.57 T 23-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 Gene3D G3DSA:3.30.200.20 16 112 1.6E-33 T 23-04-2016 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 328 430 1.6E-24 T 23-04-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 661 748 6.9E-13 T 23-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 SMART SM01210 660 750 3.7E-25 T 23-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 Gene3D G3DSA:3.90.600.10 661 748 1.4E-11 T 23-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 431 626 1.2E-51 T 23-04-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 SUPERFAMILY SSF56059 432 652 2.16E-35 T 23-04-2016 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 22 298 21.093 T 23-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 Gene3D G3DSA:3.30.470.20 113 244 9.5E-46 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 Pfam PF01259 SAICAR synthetase 26 273 1.1E-75 T 23-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 PANTHER PTHR11609 11 505 2.0E-152 T 23-04-2016 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 SUPERFAMILY SSF56104 20 301 2.39E-82 T 23-04-2016 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 Gene3D G3DSA:3.30.470.20 519 658 5.7E-44 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 ProSitePatterns PS01057 SAICAR synthetase signature 1. 100 114 - T 23-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 328 749 1.1E-124 T 23-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 SD28_RS00040 8ea4a84bd321e2b2dda35376ff9d4f91 770 Gene3D G3DSA:3.30.1490.20 451 517 1.2E-12 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 SD28_RS02420 27dfe0b9219fa3b26821ce423300668b 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 23-04-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 SD28_RS02420 27dfe0b9219fa3b26821ce423300668b 118 SUPERFAMILY SSF46946 2 114 8.11E-46 T 23-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 SD28_RS02420 27dfe0b9219fa3b26821ce423300668b 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 117 25.362 T 23-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02420 27dfe0b9219fa3b26821ce423300668b 118 PIRSF PIRSF002134 1 118 9.8E-42 T 23-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02420 27dfe0b9219fa3b26821ce423300668b 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 5.8E-30 T 23-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02420 27dfe0b9219fa3b26821ce423300668b 118 PANTHER PTHR10871 1 116 7.6E-67 T 23-04-2016 SD28_RS02420 27dfe0b9219fa3b26821ce423300668b 118 Gene3D G3DSA:4.10.910.10 72 117 3.1E-27 T 23-04-2016 IPR027437 30s ribosomal protein S13, C-terminal SD28_RS02420 27dfe0b9219fa3b26821ce423300668b 118 Gene3D G3DSA:1.10.8.50 1 71 8.0E-29 T 23-04-2016 SD28_RS02420 27dfe0b9219fa3b26821ce423300668b 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 2.1E-53 T 23-04-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS03645 2d06ac88e7b7a81d87e027e4edb0e005 160 PANTHER PTHR32125 1 156 2.3E-48 T 23-04-2016 SD28_RS03645 2d06ac88e7b7a81d87e027e4edb0e005 160 Gene3D G3DSA:3.30.1330.50 1 157 3.1E-70 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS03645 2d06ac88e7b7a81d87e027e4edb0e005 160 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 2 158 34.271 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS03645 2d06ac88e7b7a81d87e027e4edb0e005 160 Pfam PF02542 YgbB family 2 156 1.7E-65 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS03645 2d06ac88e7b7a81d87e027e4edb0e005 160 SUPERFAMILY SSF69765 1 158 1.57E-63 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS03645 2d06ac88e7b7a81d87e027e4edb0e005 160 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3 156 7.7E-67 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS03645 2d06ac88e7b7a81d87e027e4edb0e005 160 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 37 52 - T 23-04-2016 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS01775 450c38e7a659322e276170c6af006139 397 PANTHER PTHR23502:SF19 9 387 4.5E-71 T 23-04-2016 SD28_RS01775 450c38e7a659322e276170c6af006139 397 Pfam PF07690 Major Facilitator Superfamily 16 355 8.5E-40 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS01775 450c38e7a659322e276170c6af006139 397 Gene3D G3DSA:1.20.1250.20 8 192 1.6E-26 T 23-04-2016 SD28_RS01775 450c38e7a659322e276170c6af006139 397 Gene3D G3DSA:1.20.1250.20 211 387 1.8E-6 T 23-04-2016 SD28_RS01775 450c38e7a659322e276170c6af006139 397 PANTHER PTHR23502 9 387 4.5E-71 T 23-04-2016 SD28_RS01775 450c38e7a659322e276170c6af006139 397 SUPERFAMILY SSF103473 7 393 3.66E-57 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS01775 450c38e7a659322e276170c6af006139 397 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 7 386 7.4E-70 T 23-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 Gene3D G3DSA:1.10.560.10 4 196 3.8E-46 T 23-04-2016 IPR027413 GroEL-like equatorial domain SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 Hamap MF_00600 60 kDa chaperonin [groL]. 2 540 41.156 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 SUPERFAMILY SSF54849 137 204 7.1E-23 T 23-04-2016 SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 Gene3D G3DSA:1.10.560.10 370 518 8.0E-41 T 23-04-2016 IPR027413 GroEL-like equatorial domain SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 Gene3D G3DSA:3.50.7.10 197 369 1.0E-94 T 23-04-2016 IPR027409 GroEL-like apical domain SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 PRINTS PR00298 60kDa chaperonin signature 268 291 4.1E-74 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 PRINTS PR00298 60kDa chaperonin signature 398 419 4.1E-74 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 PRINTS PR00298 60kDa chaperonin signature 350 375 4.1E-74 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 PRINTS PR00298 60kDa chaperonin signature 83 110 4.1E-74 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 PRINTS PR00298 60kDa chaperonin signature 27 53 4.1E-74 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 PANTHER PTHR11353 2 544 7.5E-246 T 23-04-2016 SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 6.5E-257 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 2.5E-97 T 23-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 SUPERFAMILY SSF48592 406 521 8.4E-76 T 23-04-2016 SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 SUPERFAMILY SSF48592 7 134 8.4E-76 T 23-04-2016 SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 23-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 SD28_RS07435 c54d81ca96a9c4d7233d376b3816d01d 544 SUPERFAMILY SSF52029 184 376 9.87E-85 T 23-04-2016 IPR027409 GroEL-like apical domain SD28_RS06355 025426594567e9fab8672dd39e6bbf34 294 SUPERFAMILY SSF55681 3 285 9.44E-132 T 23-04-2016 SD28_RS06355 025426594567e9fab8672dd39e6bbf34 294 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 3 294 6.0E-158 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS06355 025426594567e9fab8672dd39e6bbf34 294 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 2 286 59.293 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS06355 025426594567e9fab8672dd39e6bbf34 294 Gene3D G3DSA:3.30.930.10 1 208 2.3E-102 T 23-04-2016 SD28_RS06355 025426594567e9fab8672dd39e6bbf34 294 Gene3D G3DSA:1.20.58.180 210 291 4.2E-34 T 23-04-2016 SD28_RS06355 025426594567e9fab8672dd39e6bbf34 294 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 157 172 7.2E-69 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS06355 025426594567e9fab8672dd39e6bbf34 294 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 56 71 7.2E-69 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS06355 025426594567e9fab8672dd39e6bbf34 294 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 77 97 7.2E-69 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS06355 025426594567e9fab8672dd39e6bbf34 294 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 134 154 7.2E-69 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS06355 025426594567e9fab8672dd39e6bbf34 294 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 108 132 7.2E-69 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS06355 025426594567e9fab8672dd39e6bbf34 294 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 246 262 7.2E-69 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS06355 025426594567e9fab8672dd39e6bbf34 294 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 4 284 4.6E-147 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS06355 025426594567e9fab8672dd39e6bbf34 294 PANTHER PTHR30075 2 294 9.5E-236 T 23-04-2016 SD28_RS02945 37d2ae1438b157c2353ac6c33d9b2665 228 Pfam PF00753 Metallo-beta-lactamase superfamily 12 171 1.1E-15 T 23-04-2016 IPR001279 Metallo-beta-lactamase SD28_RS02945 37d2ae1438b157c2353ac6c33d9b2665 228 Gene3D G3DSA:3.60.15.10 4 218 2.6E-57 T 23-04-2016 IPR001279 Metallo-beta-lactamase SD28_RS02945 37d2ae1438b157c2353ac6c33d9b2665 228 SUPERFAMILY SSF56281 1 226 3.22E-52 T 23-04-2016 IPR001279 Metallo-beta-lactamase SD28_RS02945 37d2ae1438b157c2353ac6c33d9b2665 228 SMART SM00849 12 171 1.1E-26 T 23-04-2016 IPR001279 Metallo-beta-lactamase SD28_RS02945 37d2ae1438b157c2353ac6c33d9b2665 228 PANTHER PTHR11935 1 224 5.0E-69 T 23-04-2016 SD28_RS02945 37d2ae1438b157c2353ac6c33d9b2665 228 PANTHER PTHR11935:SF113 1 224 5.0E-69 T 23-04-2016 SD28_RS04000 5b9b4c6a7978aa56520e252b899e2ade 142 Gene3D G3DSA:3.90.1180.10 3 140 1.6E-62 T 23-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 SD28_RS04000 5b9b4c6a7978aa56520e252b899e2ade 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 23-04-2016 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 SD28_RS04000 5b9b4c6a7978aa56520e252b899e2ade 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 140 27.374 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 SD28_RS04000 5b9b4c6a7978aa56520e252b899e2ade 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 141 3.9E-63 T 23-04-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 SD28_RS04000 5b9b4c6a7978aa56520e252b899e2ade 142 PIRSF PIRSF002181 1 142 2.5E-51 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 SD28_RS04000 5b9b4c6a7978aa56520e252b899e2ade 142 PANTHER PTHR11545 1 137 2.3E-69 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 SD28_RS04000 5b9b4c6a7978aa56520e252b899e2ade 142 Pfam PF00572 Ribosomal protein L13 14 138 9.5E-57 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 SD28_RS04000 5b9b4c6a7978aa56520e252b899e2ade 142 SUPERFAMILY SSF52161 1 138 1.96E-58 T 23-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 SD28_RS00300 e82bf34507371b504c021e2695af5c43 362 Gene3D G3DSA:3.30.160.20 216 291 1.1E-36 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain SD28_RS00300 e82bf34507371b504c021e2695af5c43 362 SMART SM00937 67 180 7.5E-64 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 SD28_RS00300 e82bf34507371b504c021e2695af5c43 362 Pfam PF00472 RF-1 domain 217 323 2.7E-43 T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 SD28_RS00300 e82bf34507371b504c021e2695af5c43 362 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 359 41.347 T 23-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 SD28_RS00300 e82bf34507371b504c021e2695af5c43 362 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 230 246 - T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 SD28_RS00300 e82bf34507371b504c021e2695af5c43 362 PANTHER PTHR11075:SF9 1 358 1.5E-177 T 23-04-2016 SD28_RS00300 e82bf34507371b504c021e2695af5c43 362 Gene3D G3DSA:1.20.58.410 8 95 1.3E-18 T 23-04-2016 SD28_RS00300 e82bf34507371b504c021e2695af5c43 362 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 359 8.5E-172 T 23-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 SD28_RS00300 e82bf34507371b504c021e2695af5c43 362 SUPERFAMILY SSF75620 12 355 2.88E-139 T 23-04-2016 SD28_RS00300 e82bf34507371b504c021e2695af5c43 362 Pfam PF03462 PCRF domain 13 205 4.0E-74 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 SD28_RS00300 e82bf34507371b504c021e2695af5c43 362 PANTHER PTHR11075 1 358 1.5E-177 T 23-04-2016 SD28_RS00860 b32694d88cc08d5985ef1b57b0d4c3cc 233 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 5 107 1.7E-33 T 23-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 SD28_RS00860 b32694d88cc08d5985ef1b57b0d4c3cc 233 SUPERFAMILY SSF54292 2 102 1.13E-28 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 SD28_RS00860 b32694d88cc08d5985ef1b57b0d4c3cc 233 PANTHER PTHR11921 5 230 2.0E-128 T 23-04-2016 SD28_RS00860 b32694d88cc08d5985ef1b57b0d4c3cc 233 SUPERFAMILY SSF46548 103 231 1.1E-38 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 SD28_RS00860 b32694d88cc08d5985ef1b57b0d4c3cc 233 Gene3D G3DSA:3.10.20.30 1 102 4.8E-39 T 23-04-2016 IPR012675 Beta-grasp domain SD28_RS00860 b32694d88cc08d5985ef1b57b0d4c3cc 233 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 225 2.5E-87 T 23-04-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 SD28_RS00860 b32694d88cc08d5985ef1b57b0d4c3cc 233 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 144 155 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SD28_RS00860 b32694d88cc08d5985ef1b57b0d4c3cc 233 Pfam PF13534 4Fe-4S dicluster domain 143 216 5.0E-9 T 23-04-2016 SD28_RS00860 b32694d88cc08d5985ef1b57b0d4c3cc 233 Gene3D G3DSA:1.10.1060.10 103 231 6.3E-48 T 23-04-2016 SD28_RS05000 c927038766f8e78989b458f844fe07af 663 SUPERFAMILY SSF82199 53 188 3.01E-15 T 23-04-2016 SD28_RS05000 c927038766f8e78989b458f844fe07af 663 Gene3D G3DSA:2.170.270.10 55 184 8.1E-11 T 23-04-2016 SD28_RS05000 c927038766f8e78989b458f844fe07af 663 SMART SM00355 609 633 0.36 T 23-04-2016 IPR015880 Zinc finger, C2H2-like SD28_RS05000 c927038766f8e78989b458f844fe07af 663 SMART SM00355 576 600 27.0 T 23-04-2016 IPR015880 Zinc finger, C2H2-like SD28_RS05000 c927038766f8e78989b458f844fe07af 663 Pfam PF00856 SET domain 62 184 9.3E-6 T 23-04-2016 IPR001214 SET domain GO:0005515 SD28_RS05000 c927038766f8e78989b458f844fe07af 663 Pfam PF00443 Ubiquitin carboxyl-terminal hydrolase 281 484 7.7E-10 T 23-04-2016 IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase GO:0016579|GO:0036459 SD28_RS05000 c927038766f8e78989b458f844fe07af 663 SMART SM00317 51 190 4.3E-4 T 23-04-2016 IPR001214 SET domain GO:0005515 SD28_RS05000 c927038766f8e78989b458f844fe07af 663 SUPERFAMILY SSF54001 221 485 2.75E-25 T 23-04-2016 SD28_RS07135 d8c41f79b8310e06cdb26835ee217826 397 PANTHER PTHR30222:SF5 39 380 1.3E-71 T 23-04-2016 SD28_RS07135 d8c41f79b8310e06cdb26835ee217826 397 Pfam PF13416 Bacterial extracellular solute-binding protein 70 322 3.3E-24 T 23-04-2016 SD28_RS07135 d8c41f79b8310e06cdb26835ee217826 397 Gene3D G3DSA:3.40.190.10 40 164 2.8E-8 T 23-04-2016 SD28_RS07135 d8c41f79b8310e06cdb26835ee217826 397 Gene3D G3DSA:3.40.190.10 165 332 1.1E-58 T 23-04-2016 SD28_RS07135 d8c41f79b8310e06cdb26835ee217826 397 SUPERFAMILY SSF53850 42 382 5.18E-71 T 23-04-2016 SD28_RS07135 d8c41f79b8310e06cdb26835ee217826 397 PANTHER PTHR30222 39 380 1.3E-71 T 23-04-2016 SD28_RS07135 d8c41f79b8310e06cdb26835ee217826 397 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 233 252 1.2E-32 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 SD28_RS07135 d8c41f79b8310e06cdb26835ee217826 397 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 195 214 1.2E-32 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 SD28_RS07135 d8c41f79b8310e06cdb26835ee217826 397 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 48 64 1.2E-32 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 SD28_RS07135 d8c41f79b8310e06cdb26835ee217826 397 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 141 157 1.2E-32 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 SD28_RS07135 d8c41f79b8310e06cdb26835ee217826 397 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 283 302 1.2E-32 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 SD28_RS07135 d8c41f79b8310e06cdb26835ee217826 397 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 172 186 1.2E-32 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 SD28_RS07135 d8c41f79b8310e06cdb26835ee217826 397 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 107 120 1.2E-32 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 SD28_RS07135 d8c41f79b8310e06cdb26835ee217826 397 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 91 105 1.2E-32 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 SD28_RS07135 d8c41f79b8310e06cdb26835ee217826 397 PIRSF PIRSF019574 1 383 5.3E-90 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 SUPERFAMILY SSF51905 2 335 5.18E-56 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PANTHER PTHR22912 1 456 3.4E-228 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 6 459 1.6E-144 T 23-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 326 1.7E-67 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 41 51 - T 23-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 345 451 1.7E-32 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PIRSF PIRSF000350 2 464 6.8E-92 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 7.2E-71 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 7.2E-71 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 7.2E-71 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 7.2E-71 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 7.2E-71 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 427 447 7.2E-71 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 405 420 7.2E-71 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 263 277 7.2E-71 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 341 362 7.2E-71 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 Gene3D G3DSA:3.50.50.60 143 334 3.6E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PANTHER PTHR22912:SF160 1 456 3.4E-228 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 Gene3D G3DSA:3.30.390.30 340 456 1.0E-42 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 Gene3D G3DSA:3.50.50.60 5 142 9.4E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 7.7E-39 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 7.7E-39 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 278 7.7E-39 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 7.7E-39 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 7.7E-39 T 23-04-2016 SD28_RS03235 c232199e76f2c3966f8ce2a2e90247f9 469 SUPERFAMILY SSF55424 344 463 6.53E-38 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 SD28_RS06500 6558228788173d3e42f1095806f0ad80 154 PRINTS PR01759 Capsule biosynthesis protein CapC signature 18 35 3.79E-12 T 23-04-2016 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 SD28_RS06500 6558228788173d3e42f1095806f0ad80 154 PRINTS PR01759 Capsule biosynthesis protein CapC signature 118 132 3.79E-12 T 23-04-2016 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 SD28_RS06500 6558228788173d3e42f1095806f0ad80 154 PRINTS PR01759 Capsule biosynthesis protein CapC signature 63 77 3.79E-12 T 23-04-2016 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 SD28_RS06500 6558228788173d3e42f1095806f0ad80 154 TIGRFAM TIGR04011 poly_gGlu_PgsC: poly-gamma-glutamate biosynthesis protein PgsC 8 140 4.2E-47 T 23-04-2016 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 SD28_RS06500 6558228788173d3e42f1095806f0ad80 154 Pfam PF14102 Capsule biosynthesis CapC 10 128 6.9E-33 T 23-04-2016 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 SD28_RS05290 806e83a2891ab4fbe07ecca21febe226 476 SUPERFAMILY SSF56024 273 451 5.38E-36 T 23-04-2016 SD28_RS05290 806e83a2891ab4fbe07ecca21febe226 476 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 18 476 1.1E-90 T 23-04-2016 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 SD28_RS05290 806e83a2891ab4fbe07ecca21febe226 476 Pfam PF13091 PLD-like domain 134 277 4.6E-17 T 23-04-2016 IPR025202 Phospholipase D-like domain SD28_RS05290 806e83a2891ab4fbe07ecca21febe226 476 Pfam PF13091 PLD-like domain 319 444 8.9E-29 T 23-04-2016 IPR025202 Phospholipase D-like domain SD28_RS05290 806e83a2891ab4fbe07ecca21febe226 476 SMART SM00155 219 246 1.2E-4 T 23-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 SD28_RS05290 806e83a2891ab4fbe07ecca21febe226 476 SMART SM00155 391 418 0.058 T 23-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 SD28_RS05290 806e83a2891ab4fbe07ecca21febe226 476 Gene3D G3DSA:3.30.870.10 115 312 2.6E-40 T 23-04-2016 SD28_RS05290 806e83a2891ab4fbe07ecca21febe226 476 PANTHER PTHR21248:SF5 23 476 2.2E-66 T 23-04-2016 SD28_RS05290 806e83a2891ab4fbe07ecca21febe226 476 Gene3D G3DSA:3.30.870.10 313 451 4.9E-31 T 23-04-2016 SD28_RS05290 806e83a2891ab4fbe07ecca21febe226 476 PANTHER PTHR21248 23 476 2.2E-66 T 23-04-2016 SD28_RS05290 806e83a2891ab4fbe07ecca21febe226 476 Pfam PF13396 Phospholipase_D-nuclease N-terminal 24 65 1.3E-4 T 23-04-2016 IPR027379 Cardiolipin synthase N-terminal SD28_RS05290 806e83a2891ab4fbe07ecca21febe226 476 SUPERFAMILY SSF56024 102 309 2.57E-44 T 23-04-2016 SD28_RS02575 8cd8195f8214dd385a3893d32e97793a 141 PANTHER PTHR33910 15 141 2.2E-15 T 23-04-2016 SD28_RS02575 8cd8195f8214dd385a3893d32e97793a 141 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 87 140 2.6E-13 T 23-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 SD28_RS02575 8cd8195f8214dd385a3893d32e97793a 141 PANTHER PTHR33910:SF1 15 141 2.2E-15 T 23-04-2016 SD28_RS02575 8cd8195f8214dd385a3893d32e97793a 141 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 88 116 - T 23-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 SD28_RS02575 8cd8195f8214dd385a3893d32e97793a 141 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 86 138 4.1E-14 T 23-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 SD28_RS02575 8cd8195f8214dd385a3893d32e97793a 141 Hamap MF_00422 Protein translocase subunit SecE [secE]. 80 138 10.543 T 23-04-2016 IPR022943 Preprotein translocase subunit SecE SD28_RS02575 8cd8195f8214dd385a3893d32e97793a 141 Gene3D G3DSA:1.20.5.1030 82 140 1.4E-18 T 23-04-2016 SD28_RS02575 8cd8195f8214dd385a3893d32e97793a 141 PRINTS PR01650 Bacterial translocase SecE signature 82 102 6.5E-10 T 23-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 SD28_RS02575 8cd8195f8214dd385a3893d32e97793a 141 PRINTS PR01650 Bacterial translocase SecE signature 106 126 6.5E-10 T 23-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 SD28_RS02575 8cd8195f8214dd385a3893d32e97793a 141 PRINTS PR01650 Bacterial translocase SecE signature 61 82 6.5E-10 T 23-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 SD28_RS02370 586a8f11e8f3f3c5a73286765b5893ba 179 Pfam PF00281 Ribosomal protein L5 24 80 6.9E-28 T 23-04-2016 IPR031310 Ribosomal protein L5, N-terminal SD28_RS02370 586a8f11e8f3f3c5a73286765b5893ba 179 PIRSF PIRSF002161 1 179 1.2E-66 T 23-04-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 SD28_RS02370 586a8f11e8f3f3c5a73286765b5893ba 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 7.5E-41 T 23-04-2016 IPR031309 Ribosomal protein L5, C-terminal SD28_RS02370 586a8f11e8f3f3c5a73286765b5893ba 179 Gene3D G3DSA:3.30.1440.10 1 178 4.7E-77 T 23-04-2016 IPR022803 Ribosomal protein L5 domain SD28_RS02370 586a8f11e8f3f3c5a73286765b5893ba 179 SUPERFAMILY SSF55282 3 178 1.06E-76 T 23-04-2016 IPR022803 Ribosomal protein L5 domain SD28_RS02370 586a8f11e8f3f3c5a73286765b5893ba 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 23-04-2016 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02370 586a8f11e8f3f3c5a73286765b5893ba 179 PANTHER PTHR11994 1 178 8.4E-93 T 23-04-2016 SD28_RS02370 586a8f11e8f3f3c5a73286765b5893ba 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 43.495 T 23-04-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05780 a196a914bacb0c38e1d18f4c55bfba73 151 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 148 3.6E-24 T 23-04-2016 IPR020069 Ribosomal protein L9, C-terminal SD28_RS05780 a196a914bacb0c38e1d18f4c55bfba73 151 Gene3D G3DSA:3.40.5.10 1 51 1.2E-25 T 23-04-2016 IPR020070 Ribosomal protein L9, N-terminal SD28_RS05780 a196a914bacb0c38e1d18f4c55bfba73 151 PANTHER PTHR21368 1 151 1.7E-48 T 23-04-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05780 a196a914bacb0c38e1d18f4c55bfba73 151 SUPERFAMILY SSF55653 61 148 2.09E-22 T 23-04-2016 IPR020069 Ribosomal protein L9, C-terminal SD28_RS05780 a196a914bacb0c38e1d18f4c55bfba73 151 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 46 1.9E-22 T 23-04-2016 IPR020070 Ribosomal protein L9, N-terminal SD28_RS05780 a196a914bacb0c38e1d18f4c55bfba73 151 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 23-04-2016 IPR020070 Ribosomal protein L9, N-terminal SD28_RS05780 a196a914bacb0c38e1d18f4c55bfba73 151 Gene3D G3DSA:3.10.430.100 63 149 2.4E-26 T 23-04-2016 IPR020069 Ribosomal protein L9, C-terminal SD28_RS05780 a196a914bacb0c38e1d18f4c55bfba73 151 SUPERFAMILY SSF55658 1 56 1.6E-18 T 23-04-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal SD28_RS05780 a196a914bacb0c38e1d18f4c55bfba73 151 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 148 8.6E-45 T 23-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05780 a196a914bacb0c38e1d18f4c55bfba73 151 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 24.262 T 23-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS00485 008ed2f541f3c09c550a429caefe7f42 293 PANTHER PTHR11092:SF0 1 291 1.7E-68 T 23-04-2016 SD28_RS00485 008ed2f541f3c09c550a429caefe7f42 293 PANTHER PTHR11092 1 291 1.7E-68 T 23-04-2016 IPR010099 Epimerase family protein SDR39U1 SD28_RS00485 008ed2f541f3c09c550a429caefe7f42 293 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 218 1.3E-11 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 SD28_RS00485 008ed2f541f3c09c550a429caefe7f42 293 Gene3D G3DSA:3.40.50.720 1 236 6.2E-19 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS00485 008ed2f541f3c09c550a429caefe7f42 293 SUPERFAMILY SSF51735 1 247 5.79E-29 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS00485 008ed2f541f3c09c550a429caefe7f42 293 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 289 3.8E-63 T 23-04-2016 IPR010099 Epimerase family protein SDR39U1 SD28_RS00485 008ed2f541f3c09c550a429caefe7f42 293 Pfam PF08338 Domain of unknown function (DUF1731) 245 290 5.6E-9 T 23-04-2016 IPR013549 Domain of unknown function DUF1731 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 SUPERFAMILY SSF55257 17 54 1.19E-16 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 SUPERFAMILY SSF55257 177 226 1.19E-16 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 Gene3D G3DSA:1.10.150.20 243 316 6.3E-30 T 23-04-2016 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 Gene3D G3DSA:2.170.120.12 54 174 3.9E-30 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 251 316 8.0E-20 T 23-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 PANTHER PTHR32108 4 323 4.5E-78 T 23-04-2016 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 30 216 3.6E-12 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 65 151 3.6E-16 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 PANTHER PTHR32108:SF0 4 323 4.5E-78 T 23-04-2016 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 Gene3D G3DSA:3.30.1360.10 15 52 9.8E-19 T 23-04-2016 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 Gene3D G3DSA:3.30.1360.10 175 224 9.8E-19 T 23-04-2016 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 SUPERFAMILY SSF47789 246 315 1.02E-23 T 23-04-2016 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 6 312 28.137 T 23-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 246 302 1.6E-24 T 23-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 SUPERFAMILY SSF56553 54 175 6.1E-28 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 26 310 6.7E-78 T 23-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS02435 081652e5e211fa9e3f075ca86b8f8be8 323 SMART SM00662 24 227 6.6E-34 T 23-04-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS05785 d840a613ed618834ee3240262d88712c 72 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 1 69 19.523 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05785 d840a613ed618834ee3240262d88712c 72 PANTHER PTHR13479 2 70 2.3E-29 T 23-04-2016 SD28_RS05785 d840a613ed618834ee3240262d88712c 72 SUPERFAMILY SSF46911 3 71 1.24E-28 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05785 d840a613ed618834ee3240262d88712c 72 Pfam PF01084 Ribosomal protein S18 14 64 2.1E-26 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05785 d840a613ed618834ee3240262d88712c 72 PRINTS PR00974 Ribosomal protein S18 family signature 42 56 6.6E-18 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05785 d840a613ed618834ee3240262d88712c 72 PRINTS PR00974 Ribosomal protein S18 family signature 34 41 6.6E-18 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05785 d840a613ed618834ee3240262d88712c 72 PRINTS PR00974 Ribosomal protein S18 family signature 24 34 6.6E-18 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05785 d840a613ed618834ee3240262d88712c 72 PRINTS PR00974 Ribosomal protein S18 family signature 56 66 6.6E-18 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05785 d840a613ed618834ee3240262d88712c 72 TIGRFAM TIGR00165 S18: ribosomal protein bS18 2 68 7.3E-33 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05785 d840a613ed618834ee3240262d88712c 72 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 17 66 7.0E-22 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05785 d840a613ed618834ee3240262d88712c 72 Gene3D G3DSA:4.10.640.10 4 71 3.5E-33 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05785 d840a613ed618834ee3240262d88712c 72 ProSitePatterns PS00057 Ribosomal protein S18 signature. 17 40 - T 23-04-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS03715 91d3925d4146f1e70774aac41f5e7d32 313 Pfam PF07549 SecD/SecF GG Motif 32 57 1.1E-9 T 23-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site SD28_RS03715 91d3925d4146f1e70774aac41f5e7d32 313 SUPERFAMILY SSF82866 116 294 3.14E-36 T 23-04-2016 SD28_RS03715 91d3925d4146f1e70774aac41f5e7d32 313 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 119 283 8.2E-56 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial SD28_RS03715 91d3925d4146f1e70774aac41f5e7d32 313 Gene3D G3DSA:1.20.1640.10 100 295 4.3E-26 T 23-04-2016 SD28_RS03715 91d3925d4146f1e70774aac41f5e7d32 313 PANTHER PTHR30081 1 312 4.5E-81 T 23-04-2016 SD28_RS03715 91d3925d4146f1e70774aac41f5e7d32 313 PRINTS PR01755 Bacterial translocase SecF protein signature 234 249 3.5E-28 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial SD28_RS03715 91d3925d4146f1e70774aac41f5e7d32 313 PRINTS PR01755 Bacterial translocase SecF protein signature 37 52 3.5E-28 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial SD28_RS03715 91d3925d4146f1e70774aac41f5e7d32 313 PRINTS PR01755 Bacterial translocase SecF protein signature 154 168 3.5E-28 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial SD28_RS03715 91d3925d4146f1e70774aac41f5e7d32 313 PRINTS PR01755 Bacterial translocase SecF protein signature 202 220 3.5E-28 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial SD28_RS03715 91d3925d4146f1e70774aac41f5e7d32 313 Pfam PF02355 Protein export membrane protein 115 293 1.4E-65 T 23-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial SD28_RS03715 91d3925d4146f1e70774aac41f5e7d32 313 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 10 297 28.342 T 23-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 SD28_RS03715 91d3925d4146f1e70774aac41f5e7d32 313 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 38 286 1.9E-79 T 23-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 Pfam PF01556 DnaJ C terminal domain 116 328 6.2E-44 T 23-04-2016 IPR002939 Chaperone DnaJ, C-terminal SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 SUPERFAMILY SSF49493 110 134 5.62E-22 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 SUPERFAMILY SSF49493 181 262 5.62E-22 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 Gene3D G3DSA:2.60.260.20 251 328 3.1E-21 T 23-04-2016 SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 Pfam PF00684 DnaJ central domain 143 202 1.0E-12 T 23-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 Pfam PF00226 DnaJ domain 6 67 6.5E-29 T 23-04-2016 IPR001623 DnaJ domain SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 SUPERFAMILY SSF46565 2 100 5.23E-35 T 23-04-2016 IPR001623 DnaJ domain SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 SUPERFAMILY SSF57938 130 206 9.81E-20 T 23-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 PRINTS PR00625 DnaJ domain signature 25 40 2.3E-31 T 23-04-2016 IPR001623 DnaJ domain SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 PRINTS PR00625 DnaJ domain signature 7 25 2.3E-31 T 23-04-2016 IPR001623 DnaJ domain SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 PRINTS PR00625 DnaJ domain signature 42 62 2.3E-31 T 23-04-2016 IPR001623 DnaJ domain SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 PRINTS PR00625 DnaJ domain signature 62 81 2.3E-31 T 23-04-2016 IPR001623 DnaJ domain SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 Gene3D G3DSA:2.60.260.20 106 136 7.1E-22 T 23-04-2016 SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 Gene3D G3DSA:2.60.260.20 206 249 7.1E-22 T 23-04-2016 SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 PANTHER PTHR24078 1 364 4.4E-151 T 23-04-2016 SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 368 39.826 T 23-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 Gene3D G3DSA:2.10.230.10 137 205 9.6E-22 T 23-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 Gene3D G3DSA:1.10.287.110 1 100 2.3E-37 T 23-04-2016 IPR001623 DnaJ domain SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 PANTHER PTHR24078:SF231 1 364 4.4E-151 T 23-04-2016 SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 SUPERFAMILY SSF49493 254 339 4.58E-21 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 SMART SM00271 4 62 8.4E-33 T 23-04-2016 IPR001623 DnaJ domain SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 23-04-2016 IPR018253 DnaJ domain, conserved site SD28_RS04025 b1fc599f77121c5726632668642ee14e 374 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 6 345 9.4E-134 T 23-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 Gene3D G3DSA:3.30.1360.120 1 119 1.1E-43 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 450 1.9E-103 T 23-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 SUPERFAMILY SSF52540 71 150 2.81E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 SUPERFAMILY SSF52540 186 370 2.81E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 Gene3D G3DSA:3.40.50.300 284 373 9.4E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 PANTHER PTHR11649:SF56 8 450 2.7E-143 T 23-04-2016 SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 Pfam PF12631 MnmE helical domain 121 447 8.3E-52 T 23-04-2016 IPR025867 MnmE, helical domain SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 284 302 1.1E-5 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 217 237 1.1E-5 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 Gene3D G3DSA:3.40.50.300 215 245 1.9E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 214 348 1.4E-18 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 Gene3D G3DSA:1.20.120.430 246 269 6.6E-54 T 23-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 Gene3D G3DSA:1.20.120.430 381 450 6.6E-54 T 23-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 Gene3D G3DSA:1.20.120.430 120 180 6.6E-54 T 23-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 Pfam PF01926 50S ribosome-binding GTPase 217 337 7.2E-24 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 SUPERFAMILY SSF116878 119 218 1.09E-45 T 23-04-2016 SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 SUPERFAMILY SSF116878 376 450 1.09E-45 T 23-04-2016 SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 PANTHER PTHR11649 8 450 2.7E-143 T 23-04-2016 SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 118 9.4E-38 T 23-04-2016 IPR018948 GTP-binding protein TrmE, N-terminal SD28_RS03955 401ed05d6b14c08a062eb6239ef243d2 450 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 450 31.954 T 23-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 SD28_RS00700 acec3276bc2fe3e23030e11e7f765d6d 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 1.8E-74 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00700 acec3276bc2fe3e23030e11e7f765d6d 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 49.401 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00700 acec3276bc2fe3e23030e11e7f765d6d 513 PANTHER PTHR15184:SF3 1 496 2.2E-285 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00700 acec3276bc2fe3e23030e11e7f765d6d 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 512 3.8E-242 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00700 acec3276bc2fe3e23030e11e7f765d6d 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 92 1.5E-11 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00700 acec3276bc2fe3e23030e11e7f765d6d 513 Gene3D G3DSA:1.20.150.20 383 510 5.7E-44 T 23-04-2016 SD28_RS00700 acec3276bc2fe3e23030e11e7f765d6d 513 SUPERFAMILY SSF50615 11 94 4.71E-27 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00700 acec3276bc2fe3e23030e11e7f765d6d 513 SUPERFAMILY SSF47917 383 511 2.88E-43 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00700 acec3276bc2fe3e23030e11e7f765d6d 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00700 acec3276bc2fe3e23030e11e7f765d6d 513 PANTHER PTHR15184 1 496 2.2E-285 T 23-04-2016 SD28_RS00700 acec3276bc2fe3e23030e11e7f765d6d 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 506 6.1E-42 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00700 acec3276bc2fe3e23030e11e7f765d6d 513 SUPERFAMILY SSF52540 96 381 6.71E-95 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00700 acec3276bc2fe3e23030e11e7f765d6d 513 Gene3D G3DSA:2.40.30.20 1 93 1.8E-31 T 23-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00700 acec3276bc2fe3e23030e11e7f765d6d 513 Gene3D G3DSA:3.40.50.300 94 382 1.9E-114 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 SMART SM00861 355 527 8.2E-65 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 ProSitePatterns PS00802 Transketolase signature 2. 468 484 - T 23-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 Gene3D G3DSA:3.40.50.970 329 531 4.2E-72 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 TIGRFAM TIGR00232 tktlase_bact: transketolase 10 660 3.3E-274 T 23-04-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 PANTHER PTHR11624:SF1 348 663 0.0 T 23-04-2016 SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 PANTHER PTHR11624:SF1 2 318 0.0 T 23-04-2016 SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 Pfam PF02779 Transketolase, pyrimidine binding domain 354 524 1.4E-43 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 Pfam PF02780 Transketolase, C-terminal domain 548 655 2.4E-11 T 23-04-2016 IPR033248 Transketolase, C-terminal domain SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 ProSitePatterns PS00801 Transketolase signature 1. 14 34 - T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 PANTHER PTHR11624 348 663 0.0 T 23-04-2016 IPR033247 Transketolase family SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 PANTHER PTHR11624 2 318 0.0 T 23-04-2016 IPR033247 Transketolase family SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 7 334 8.9E-149 T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 Gene3D G3DSA:3.40.50.970 5 317 1.8E-125 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 SUPERFAMILY SSF52922 534 662 1.44E-36 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 SUPERFAMILY SSF52518 344 526 1.47E-63 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 SUPERFAMILY SSF52518 4 319 3.07E-116 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS06065 96696f0f29ddeff0f932c773d6dc2546 663 Gene3D G3DSA:3.40.50.920 539 660 7.8E-35 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 SD28_RS04890 c7f377a85f3cc1c14057c3e45c3ce5ab 102 PANTHER PTHR37483 1 98 1.6E-19 T 23-04-2016 SD28_RS04890 c7f377a85f3cc1c14057c3e45c3ce5ab 102 Hamap MF_00460 Protein RnfH [rnfH]. 1 93 16.86 T 23-04-2016 IPR005346 RnfH protein SD28_RS04890 c7f377a85f3cc1c14057c3e45c3ce5ab 102 SUPERFAMILY SSF54285 2 77 2.18E-16 T 23-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp SD28_RS04890 c7f377a85f3cc1c14057c3e45c3ce5ab 102 Pfam PF03658 RnfH family Ubiquitin 1 84 7.0E-24 T 23-04-2016 IPR005346 RnfH protein SD28_RS04890 c7f377a85f3cc1c14057c3e45c3ce5ab 102 Gene3D G3DSA:3.10.20.280 2 87 8.2E-25 T 23-04-2016 IPR005346 RnfH protein SD28_RS04890 c7f377a85f3cc1c14057c3e45c3ce5ab 102 PANTHER PTHR37483:SF1 1 98 1.6E-19 T 23-04-2016 SD28_RS02045 244ba3d48c565ab258286d4fe1d9f2b3 349 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 134 168 5.7E-10 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS02045 244ba3d48c565ab258286d4fe1d9f2b3 349 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 231 266 5.2E-8 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS02045 244ba3d48c565ab258286d4fe1d9f2b3 349 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 300 6.9E-6 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS02045 244ba3d48c565ab258286d4fe1d9f2b3 349 PANTHER PTHR22572:SF117 62 304 7.6E-49 T 23-04-2016 SD28_RS02045 244ba3d48c565ab258286d4fe1d9f2b3 349 Gene3D G3DSA:2.160.10.10 275 345 1.0E-16 T 23-04-2016 SD28_RS02045 244ba3d48c565ab258286d4fe1d9f2b3 349 Gene3D G3DSA:2.160.10.10 161 274 1.6E-25 T 23-04-2016 SD28_RS02045 244ba3d48c565ab258286d4fe1d9f2b3 349 PANTHER PTHR22572 62 304 7.6E-49 T 23-04-2016 SD28_RS02045 244ba3d48c565ab258286d4fe1d9f2b3 349 SUPERFAMILY SSF51161 35 325 5.19E-80 T 23-04-2016 IPR011004 Trimeric LpxA-like SD28_RS02045 244ba3d48c565ab258286d4fe1d9f2b3 349 Gene3D G3DSA:2.160.10.10 89 160 2.3E-18 T 23-04-2016 SD28_RS02045 244ba3d48c565ab258286d4fe1d9f2b3 349 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 8 334 31.911 T 23-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 SD28_RS02045 244ba3d48c565ab258286d4fe1d9f2b3 349 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 25 96 1.7E-9 T 23-04-2016 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 UniPathway: UPA00973 SD28_RS02045 244ba3d48c565ab258286d4fe1d9f2b3 349 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 337 5.3E-98 T 23-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 SD28_RS02045 244ba3d48c565ab258286d4fe1d9f2b3 349 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 119 147 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 SD28_RS03730 f9eea5ce653f383776f3c50cd2171f5e 426 PANTHER PTHR21090:SF5 20 426 1.1E-130 T 23-04-2016 SD28_RS03730 f9eea5ce653f383776f3c50cd2171f5e 426 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 10 421 1.8E-111 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 SD28_RS03730 f9eea5ce653f383776f3c50cd2171f5e 426 PANTHER PTHR21090 20 426 1.1E-130 T 23-04-2016 SD28_RS03730 f9eea5ce653f383776f3c50cd2171f5e 426 SUPERFAMILY SSF55205 11 424 1.1E-107 T 23-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 SD28_RS03730 f9eea5ce653f383776f3c50cd2171f5e 426 Gene3D G3DSA:3.65.10.10 22 238 8.2E-55 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 SD28_RS03730 f9eea5ce653f383776f3c50cd2171f5e 426 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 10 426 27.822 T 23-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS03730 f9eea5ce653f383776f3c50cd2171f5e 426 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 16 425 2.3E-120 T 23-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS03730 f9eea5ce653f383776f3c50cd2171f5e 426 PIRSF PIRSF000505 1 426 7.4E-139 T 23-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS03730 f9eea5ce653f383776f3c50cd2171f5e 426 Gene3D G3DSA:3.65.10.10 239 424 3.4E-61 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 SD28_RS01980 930d87631c576bbeaf894ce2b861dfb9 417 Gene3D G3DSA:1.10.645.10 5 409 5.2E-65 T 23-04-2016 IPR029014 NiFe hydrogenase-like SD28_RS01980 930d87631c576bbeaf894ce2b861dfb9 417 SUPERFAMILY SSF56762 16 417 1.11E-130 T 23-04-2016 IPR029014 NiFe hydrogenase-like SD28_RS01980 930d87631c576bbeaf894ce2b861dfb9 417 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 120 417 7.4E-119 T 23-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 SD28_RS01980 930d87631c576bbeaf894ce2b861dfb9 417 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 1 417 48.263 T 23-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 SD28_RS01980 930d87631c576bbeaf894ce2b861dfb9 417 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 43 54 - T 23-04-2016 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 SD28_RS01980 930d87631c576bbeaf894ce2b861dfb9 417 PANTHER PTHR11993 189 412 9.1E-224 T 23-04-2016 SD28_RS01980 930d87631c576bbeaf894ce2b861dfb9 417 PANTHER PTHR11993 3 164 9.1E-224 T 23-04-2016 SD28_RS01980 930d87631c576bbeaf894ce2b861dfb9 417 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 6 417 1.2E-176 T 23-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 SD28_RS01980 930d87631c576bbeaf894ce2b861dfb9 417 PANTHER PTHR11993:SF10 189 412 9.1E-224 T 23-04-2016 SD28_RS01980 930d87631c576bbeaf894ce2b861dfb9 417 PANTHER PTHR11993:SF10 3 164 9.1E-224 T 23-04-2016 SD28_RS01650 403a7626529d18790e3974b10c0851e4 117 Pfam PF04355 SmpA / OmlA family 33 102 5.8E-16 T 23-04-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 SD28_RS01650 403a7626529d18790e3974b10c0851e4 117 PANTHER PTHR37482 1 112 3.4E-19 T 23-04-2016 SD28_RS01650 403a7626529d18790e3974b10c0851e4 117 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 4 113 18.14 T 23-04-2016 IPR026592 Outer membrane protein assembly factor BamE SD28_RS01650 403a7626529d18790e3974b10c0851e4 117 PANTHER PTHR37482:SF1 1 112 3.4E-19 T 23-04-2016 SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 PANTHER PTHR11702:SF3 1 333 1.7E-150 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 PANTHER PTHR11702 1 333 1.7E-150 T 23-04-2016 SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 Gene3D G3DSA:2.70.210.12 2 156 1.2E-57 T 23-04-2016 IPR006169 GTP1/OBG domain GO:0005525 SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 Gene3D G3DSA:3.40.50.300 160 332 1.3E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 SUPERFAMILY SSF52540 151 332 1.27E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 Hamap MF_01454 GTPase Obg [obg]. 2 331 47.041 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 330 5.2E-139 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 Pfam PF01018 GTP1/OBG 3 157 1.7E-59 T 23-04-2016 IPR006169 GTP1/OBG domain GO:0005525 SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 Pfam PF01926 50S ribosome-binding GTPase 161 283 6.1E-24 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 SUPERFAMILY SSF82051 3 157 6.54E-55 T 23-04-2016 IPR006169 GTP1/OBG domain GO:0005525 SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 PIRSF PIRSF002401 1 334 1.9E-133 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 23-04-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.7E-31 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 1.7E-31 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 1.7E-31 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS01545 ba63d4f10a55999107e92ed5bd1311ec 334 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.7E-31 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS07570 f6e551b9b7a2ee8e91349c8121721ec8 250 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 24 249 1.2E-85 T 23-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 SD28_RS07570 f6e551b9b7a2ee8e91349c8121721ec8 250 Gene3D G3DSA:3.40.50.150 22 244 2.3E-55 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS07570 f6e551b9b7a2ee8e91349c8121721ec8 250 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 35 50 - T 23-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 SD28_RS07570 f6e551b9b7a2ee8e91349c8121721ec8 250 Pfam PF01209 ubiE/COQ5 methyltransferase family 20 249 1.1E-99 T 23-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 SD28_RS07570 f6e551b9b7a2ee8e91349c8121721ec8 250 SUPERFAMILY SSF53335 14 245 1.55E-47 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS07570 f6e551b9b7a2ee8e91349c8121721ec8 250 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 15 249 38.841 T 23-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 SD28_RS07570 f6e551b9b7a2ee8e91349c8121721ec8 250 PANTHER PTHR10108 1 250 2.2E-153 T 23-04-2016 SD28_RS07570 f6e551b9b7a2ee8e91349c8121721ec8 250 PANTHER PTHR10108:SF864 1 250 2.2E-153 T 23-04-2016 SD28_RS04675 c8ae13bdf4d09a7838b22a3bdc1408b0 405 PANTHER PTHR11807:SF2 7 396 2.9E-62 T 23-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 SD28_RS04675 c8ae13bdf4d09a7838b22a3bdc1408b0 405 Gene3D G3DSA:3.40.50.620 15 175 1.3E-12 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS04675 c8ae13bdf4d09a7838b22a3bdc1408b0 405 SUPERFAMILY SSF56037 326 402 2.25E-12 T 23-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 SD28_RS04675 c8ae13bdf4d09a7838b22a3bdc1408b0 405 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 345 388 6.2E-8 T 23-04-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 SD28_RS04675 c8ae13bdf4d09a7838b22a3bdc1408b0 405 Pfam PF09179 TilS substrate binding domain 245 308 2.4E-6 T 23-04-2016 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 SD28_RS04675 c8ae13bdf4d09a7838b22a3bdc1408b0 405 SUPERFAMILY SSF52402 18 228 5.73E-54 T 23-04-2016 SD28_RS04675 c8ae13bdf4d09a7838b22a3bdc1408b0 405 SMART SM00977 344 398 5.0E-5 T 23-04-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 SD28_RS04675 c8ae13bdf4d09a7838b22a3bdc1408b0 405 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 6 302 22.379 T 23-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 SD28_RS04675 c8ae13bdf4d09a7838b22a3bdc1408b0 405 SUPERFAMILY SSF82829 206 310 2.88E-8 T 23-04-2016 SD28_RS04675 c8ae13bdf4d09a7838b22a3bdc1408b0 405 Pfam PF01171 PP-loop family 20 196 7.3E-49 T 23-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal SD28_RS04675 c8ae13bdf4d09a7838b22a3bdc1408b0 405 Pfam PF11734 TilS substrate C-terminal domain 345 401 2.2E-9 T 23-04-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 SD28_RS04675 c8ae13bdf4d09a7838b22a3bdc1408b0 405 PANTHER PTHR11807 7 396 2.9E-62 T 23-04-2016 SD28_RS04675 c8ae13bdf4d09a7838b22a3bdc1408b0 405 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 20 199 3.8E-52 T 23-04-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 SD28_RS02380 918100c5eac7e4a17ed767c5df633bac 132 Gene3D G3DSA:3.30.1490.10 76 131 6.5E-25 T 23-04-2016 SD28_RS02380 918100c5eac7e4a17ed767c5df633bac 132 Pfam PF00410 Ribosomal protein S8 5 131 1.2E-41 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 SD28_RS02380 918100c5eac7e4a17ed767c5df633bac 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 28.674 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 SD28_RS02380 918100c5eac7e4a17ed767c5df633bac 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 SD28_RS02380 918100c5eac7e4a17ed767c5df633bac 132 Gene3D G3DSA:3.30.1370.30 2 73 1.1E-22 T 23-04-2016 SD28_RS02380 918100c5eac7e4a17ed767c5df633bac 132 SUPERFAMILY SSF56047 2 131 1.44E-41 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 SD28_RS02380 918100c5eac7e4a17ed767c5df633bac 132 PANTHER PTHR11758 1 132 4.7E-46 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 SD28_RS03865 3af434c408fafaf9a8a501830bd88100 260 Gene3D G3DSA:3.40.50.720 2 253 5.4E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS03865 3af434c408fafaf9a8a501830bd88100 260 PIRSF PIRSF000094 1 260 3.4E-112 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 SD28_RS03865 3af434c408fafaf9a8a501830bd88100 260 PANTHER PTHR24322 159 191 1.3E-56 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS03865 3af434c408fafaf9a8a501830bd88100 260 PANTHER PTHR24322 11 143 1.3E-56 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS03865 3af434c408fafaf9a8a501830bd88100 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 252 9.4E-81 T 23-04-2016 SD28_RS03865 3af434c408fafaf9a8a501830bd88100 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.2E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS03865 3af434c408fafaf9a8a501830bd88100 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.2E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS03865 3af434c408fafaf9a8a501830bd88100 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 1.2E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS03865 3af434c408fafaf9a8a501830bd88100 260 SUPERFAMILY SSF51735 5 254 2.25E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS03865 3af434c408fafaf9a8a501830bd88100 260 PANTHER PTHR24322:SF317 159 191 1.3E-56 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 SD28_RS03865 3af434c408fafaf9a8a501830bd88100 260 PANTHER PTHR24322:SF317 11 143 1.3E-56 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 SD28_RS01420 c6f974e6b52bba5f68f4bdf3fbe5daf0 630 Gene3D G3DSA:3.40.50.720 425 476 3.7E-6 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS01420 c6f974e6b52bba5f68f4bdf3fbe5daf0 630 SUPERFAMILY SSF51735 427 525 1.77E-6 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS01420 c6f974e6b52bba5f68f4bdf3fbe5daf0 630 Pfam PF00999 Sodium/hydrogen exchanger family 21 413 1.1E-33 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 SD28_RS01420 c6f974e6b52bba5f68f4bdf3fbe5daf0 630 PANTHER PTHR32507 11 578 8.1E-123 T 23-04-2016 SD28_RS01420 c6f974e6b52bba5f68f4bdf3fbe5daf0 630 PANTHER PTHR32507:SF0 11 578 8.1E-123 T 23-04-2016 SD28_RS00370 41ad269f7c3ff2ecee650e3c4a0e422d 245 Pfam PF01791 DeoC/LacD family aldolase 11 231 2.2E-27 T 23-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 SD28_RS00370 41ad269f7c3ff2ecee650e3c4a0e422d 245 PANTHER PTHR10889 1 234 6.3E-76 T 23-04-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 SD28_RS00370 41ad269f7c3ff2ecee650e3c4a0e422d 245 PIRSF PIRSF001357 2 242 8.4E-71 T 23-04-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 SD28_RS00370 41ad269f7c3ff2ecee650e3c4a0e422d 245 Gene3D G3DSA:3.20.20.70 4 237 2.4E-78 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS00370 41ad269f7c3ff2ecee650e3c4a0e422d 245 SMART SM01133 7 236 1.0E-64 T 23-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 SD28_RS00370 41ad269f7c3ff2ecee650e3c4a0e422d 245 SUPERFAMILY SSF51569 4 234 6.28E-69 T 23-04-2016 SD28_RS00370 41ad269f7c3ff2ecee650e3c4a0e422d 245 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 9 216 3.0E-55 T 23-04-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 SD28_RS02460 f533de4ebd8b33f78d6c59b5a78dfff5 301 PANTHER PTHR22855:SF17 1 281 8.9E-157 T 23-04-2016 SD28_RS02460 f533de4ebd8b33f78d6c59b5a78dfff5 301 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 5.3E-39 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS02460 f533de4ebd8b33f78d6c59b5a78dfff5 301 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 5.3E-39 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS02460 f533de4ebd8b33f78d6c59b5a78dfff5 301 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 5.3E-39 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS02460 f533de4ebd8b33f78d6c59b5a78dfff5 301 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 5.3E-39 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS02460 f533de4ebd8b33f78d6c59b5a78dfff5 301 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 5.3E-39 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS02460 f533de4ebd8b33f78d6c59b5a78dfff5 301 Gene3D G3DSA:3.90.226.10 18 278 4.7E-73 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS02460 f533de4ebd8b33f78d6c59b5a78dfff5 301 PANTHER PTHR22855 1 281 8.9E-157 T 23-04-2016 SD28_RS02460 f533de4ebd8b33f78d6c59b5a78dfff5 301 SUPERFAMILY SSF52096 25 281 8.29E-85 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS02460 f533de4ebd8b33f78d6c59b5a78dfff5 301 Pfam PF01039 Carboxyl transferase domain 98 241 1.2E-17 T 23-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS02460 f533de4ebd8b33f78d6c59b5a78dfff5 301 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 281 6.6E-127 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS02460 f533de4ebd8b33f78d6c59b5a78dfff5 301 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 281 37.884 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 SMART SM00963 1 86 1.7E-31 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 SUPERFAMILY SSF47446 328 425 4.41E-33 T 23-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 437 33.384 T 23-04-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 Gene3D G3DSA:1.10.260.30 328 426 7.0E-34 T 23-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 Gene3D G3DSA:3.40.50.300 94 297 5.5E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 6.0E-74 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 PANTHER PTHR11564 1 433 3.9E-238 T 23-04-2016 SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 SMART SM00382 99 277 1.9E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 424 1.0E-167 T 23-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 PANTHER PTHR11564:SF7 1 433 3.9E-238 T 23-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 Gene3D G3DSA:1.20.120.140 2 89 1.1E-32 T 23-04-2016 SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 2.0E-21 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 SMART SM00962 100 296 1.9E-110 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 SUPERFAMILY SSF52540 42 354 5.51E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04920 c43f6dcb8dd4d075e399d9f5dece1b79 456 Pfam PF02978 Signal peptide binding domain 328 423 2.7E-30 T 23-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 SD28_RS04405 8ba5f99983eb43cfe561b76b43600a6b 321 TIGRFAM TIGR01380 glut_syn: glutathione synthase 1 312 1.9E-117 T 23-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 SD28_RS04405 8ba5f99983eb43cfe561b76b43600a6b 321 PANTHER PTHR21621 1 313 6.6E-105 T 23-04-2016 SD28_RS04405 8ba5f99983eb43cfe561b76b43600a6b 321 Gene3D G3DSA:3.40.50.20 1 128 5.2E-45 T 23-04-2016 IPR016185 Pre-ATP-grasp domain SD28_RS04405 8ba5f99983eb43cfe561b76b43600a6b 321 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 297 2.3E-68 T 23-04-2016 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 SD28_RS04405 8ba5f99983eb43cfe561b76b43600a6b 321 SUPERFAMILY SSF56059 123 313 6.86E-51 T 23-04-2016 SD28_RS04405 8ba5f99983eb43cfe561b76b43600a6b 321 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 1 120 1.3E-38 T 23-04-2016 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 SD28_RS04405 8ba5f99983eb43cfe561b76b43600a6b 321 PANTHER PTHR21621:SF4 1 313 6.6E-105 T 23-04-2016 SD28_RS04405 8ba5f99983eb43cfe561b76b43600a6b 321 SUPERFAMILY SSF52440 1 122 4.03E-37 T 23-04-2016 IPR016185 Pre-ATP-grasp domain SD28_RS04405 8ba5f99983eb43cfe561b76b43600a6b 321 Hamap MF_00162 Glutathione synthetase [gshB]. 1 317 132.668 T 23-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 SD28_RS04405 8ba5f99983eb43cfe561b76b43600a6b 321 Gene3D G3DSA:3.30.1490.20 137 190 1.9E-28 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 SD28_RS04405 8ba5f99983eb43cfe561b76b43600a6b 321 Gene3D G3DSA:3.30.470.20 191 300 3.9E-43 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS04045 5d9e8f80e5b6b2c9129234a6ac42f24e 250 SUPERFAMILY SSF52402 2 246 9.48E-74 T 23-04-2016 SD28_RS04045 5d9e8f80e5b6b2c9129234a6ac42f24e 250 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 7 247 31.061 T 23-04-2016 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 SD28_RS04045 5d9e8f80e5b6b2c9129234a6ac42f24e 250 Gene3D G3DSA:3.40.50.620 2 244 3.3E-75 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS04045 5d9e8f80e5b6b2c9129234a6ac42f24e 250 TIGRFAM TIGR00552 nadE: NAD+ synthetase 10 244 1.5E-74 T 23-04-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 SD28_RS04045 5d9e8f80e5b6b2c9129234a6ac42f24e 250 PANTHER PTHR23090 1 247 6.9E-77 T 23-04-2016 SD28_RS04045 5d9e8f80e5b6b2c9129234a6ac42f24e 250 Pfam PF02540 NAD synthase 14 244 2.9E-69 T 23-04-2016 IPR022310 NAD/GMP synthase SD28_RS02790 a1305a4bcc6d3cf0c126675973799be4 294 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 SUPERFAMILY SSF52317 5 228 5.47E-57 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 Gene3D G3DSA:3.40.50.620 199 390 2.5E-58 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 Gene3D G3DSA:3.40.50.880 8 189 9.8E-60 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 6 516 54.276 T 23-04-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 PRINTS PR00096 Glutamine amidotransferase superfamily signature 53 62 5.1E-8 T 23-04-2016 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 5.1E-8 T 23-04-2016 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 PRINTS PR00096 Glutamine amidotransferase superfamily signature 168 181 5.1E-8 T 23-04-2016 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 PRINTS PR00097 Anthranilate synthase component II signature 168 181 3.7E-7 T 23-04-2016 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 PRINTS PR00097 Anthranilate synthase component II signature 79 90 3.7E-7 T 23-04-2016 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 PRINTS PR00097 Anthranilate synthase component II signature 53 62 3.7E-7 T 23-04-2016 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 PANTHER PTHR11922:SF2 2 513 8.5E-278 T 23-04-2016 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 Pfam PF00958 GMP synthase C terminal domain 425 515 6.7E-41 T 23-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 9 195 3.5E-75 T 23-04-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 PANTHER PTHR11922 2 513 8.5E-278 T 23-04-2016 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 SUPERFAMILY SSF54810 396 516 7.45E-49 T 23-04-2016 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 203 516 2.5E-149 T 23-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 Pfam PF00117 Glutamine amidotransferase class-I 11 191 1.7E-41 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 SUPERFAMILY SSF52402 184 437 1.46E-56 T 23-04-2016 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 Gene3D G3DSA:3.30.300.10 392 516 1.2E-50 T 23-04-2016 SD28_RS05170 cd9c69a1bbfb9f0a94777e075fba627a 516 Pfam PF02540 NAD synthase 206 284 5.0E-9 T 23-04-2016 IPR022310 NAD/GMP synthase SD28_RS07170 be98bf54bb66c222a3ec418b91a887c2 338 PANTHER PTHR33209:SF2 3 313 1.7E-124 T 23-04-2016 SD28_RS07170 be98bf54bb66c222a3ec418b91a887c2 338 Pfam PF01343 Peptidase family S49 154 301 2.3E-38 T 23-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 SD28_RS07170 be98bf54bb66c222a3ec418b91a887c2 338 Pfam PF08496 Peptidase family S49 N-terminal 7 150 1.2E-40 T 23-04-2016 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 SD28_RS07170 be98bf54bb66c222a3ec418b91a887c2 338 SUPERFAMILY SSF52096 90 201 4.29E-28 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS07170 be98bf54bb66c222a3ec418b91a887c2 338 SUPERFAMILY SSF52096 232 291 4.29E-28 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS07170 be98bf54bb66c222a3ec418b91a887c2 338 Gene3D G3DSA:3.90.226.10 263 293 9.2E-34 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS07170 be98bf54bb66c222a3ec418b91a887c2 338 Gene3D G3DSA:3.90.226.10 90 197 9.2E-34 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS07170 be98bf54bb66c222a3ec418b91a887c2 338 PANTHER PTHR33209 3 313 1.7E-124 T 23-04-2016 SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 PRINTS PR00145 Argininosuccinate lyase family signature 87 109 9.0E-9 T 23-04-2016 SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 PRINTS PR00145 Argininosuccinate lyase family signature 216 240 9.0E-9 T 23-04-2016 SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 PRINTS PR00145 Argininosuccinate lyase family signature 261 277 9.0E-9 T 23-04-2016 SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 PRINTS PR00145 Argininosuccinate lyase family signature 128 148 9.0E-9 T 23-04-2016 SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 PANTHER PTHR11444 4 399 4.1E-97 T 23-04-2016 IPR000362 Fumarate lyase family SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 SUPERFAMILY SSF48557 3 382 3.46E-94 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 PRINTS PR00149 Fumarate lyase superfamily signature 216 243 2.3E-22 T 23-04-2016 IPR000362 Fumarate lyase family SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 PRINTS PR00149 Fumarate lyase superfamily signature 88 106 2.3E-22 T 23-04-2016 IPR000362 Fumarate lyase family SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 PRINTS PR00149 Fumarate lyase superfamily signature 261 277 2.3E-22 T 23-04-2016 IPR000362 Fumarate lyase family SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 2.3E-22 T 23-04-2016 IPR000362 Fumarate lyase family SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 Gene3D G3DSA:1.10.275.10 1 91 2.6E-23 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 PANTHER PTHR11444:SF2 4 399 4.1E-97 T 23-04-2016 SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 ProSitePatterns PS00163 Fumarate lyases signature. 261 270 - T 23-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 428 1.5E-118 T 23-04-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 Gene3D G3DSA:1.20.200.10 92 404 6.8E-78 T 23-04-2016 SD28_RS01820 be74567cef160e7223add489b63bf4c6 432 Pfam PF00206 Lyase 63 282 2.2E-41 T 23-04-2016 IPR022761 Fumarate lyase, N-terminal SD28_RS03285 7bebf1ee5f714619906a5b463fac2898 395 PANTHER PTHR23502:SF19 10 393 3.9E-71 T 23-04-2016 SD28_RS03285 7bebf1ee5f714619906a5b463fac2898 395 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 9 386 1.9E-65 T 23-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 SD28_RS03285 7bebf1ee5f714619906a5b463fac2898 395 PRINTS PR01036 Tetracycline resistance protein TetB signature 282 306 9.4E-9 T 23-04-2016 SD28_RS03285 7bebf1ee5f714619906a5b463fac2898 395 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 9.4E-9 T 23-04-2016 SD28_RS03285 7bebf1ee5f714619906a5b463fac2898 395 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 9.4E-9 T 23-04-2016 SD28_RS03285 7bebf1ee5f714619906a5b463fac2898 395 PRINTS PR01036 Tetracycline resistance protein TetB signature 160 184 9.4E-9 T 23-04-2016 SD28_RS03285 7bebf1ee5f714619906a5b463fac2898 395 PRINTS PR01036 Tetracycline resistance protein TetB signature 105 125 9.4E-9 T 23-04-2016 SD28_RS03285 7bebf1ee5f714619906a5b463fac2898 395 SUPERFAMILY SSF103473 6 393 1.44E-55 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS03285 7bebf1ee5f714619906a5b463fac2898 395 PANTHER PTHR23502 10 393 3.9E-71 T 23-04-2016 SD28_RS03285 7bebf1ee5f714619906a5b463fac2898 395 Gene3D G3DSA:1.20.1250.20 13 194 1.2E-28 T 23-04-2016 SD28_RS03285 7bebf1ee5f714619906a5b463fac2898 395 Pfam PF07690 Major Facilitator Superfamily 15 350 6.4E-39 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS01460 e5f5632f133f603a6b7deef940ff19ee 140 SUPERFAMILY SSF55729 1 137 5.24E-28 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase SD28_RS01460 e5f5632f133f603a6b7deef940ff19ee 140 Gene3D G3DSA:3.40.630.30 1 137 3.3E-27 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase SD28_RS01460 e5f5632f133f603a6b7deef940ff19ee 140 PANTHER PTHR23091 1 138 2.0E-24 T 23-04-2016 SD28_RS01460 e5f5632f133f603a6b7deef940ff19ee 140 Pfam PF13673 Acetyltransferase (GNAT) domain 20 136 3.1E-17 T 23-04-2016 IPR000182 GNAT domain GO:0008080 SD28_RS01460 e5f5632f133f603a6b7deef940ff19ee 140 PANTHER PTHR23091:SF274 1 138 2.0E-24 T 23-04-2016 SD28_RS05870 7224fc6b6104f8772765450688e7c0a5 423 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 328 415 8.3E-10 T 23-04-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain SD28_RS05870 7224fc6b6104f8772765450688e7c0a5 423 Pfam PF01943 Polysaccharide biosynthesis protein 11 265 1.4E-6 T 23-04-2016 IPR002797 Polysaccharide biosynthesis protein GO:0016020 SD28_RS03615 471d1bce5318ed6a071f93e6c976137d 590 Pfam PF00437 Type II/IV secretion system protein 202 468 1.4E-82 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 SD28_RS03615 471d1bce5318ed6a071f93e6c976137d 590 PANTHER PTHR30258 1 589 4.2E-201 T 23-04-2016 SD28_RS03615 471d1bce5318ed6a071f93e6c976137d 590 SUPERFAMILY SSF160246 6 143 1.8E-19 T 23-04-2016 SD28_RS03615 471d1bce5318ed6a071f93e6c976137d 590 Gene3D G3DSA:3.40.50.300 305 589 4.6E-94 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03615 471d1bce5318ed6a071f93e6c976137d 590 SUPERFAMILY SSF52540 186 589 1.73E-92 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03615 471d1bce5318ed6a071f93e6c976137d 590 Gene3D G3DSA:3.30.450.90 179 301 2.0E-49 T 23-04-2016 SD28_RS03615 471d1bce5318ed6a071f93e6c976137d 590 PANTHER PTHR30258:SF1 1 589 4.2E-201 T 23-04-2016 SD28_RS03615 471d1bce5318ed6a071f93e6c976137d 590 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 44 124 1.4E-8 T 23-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 SD28_RS03615 471d1bce5318ed6a071f93e6c976137d 590 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 396 410 - T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 SD28_RS03615 471d1bce5318ed6a071f93e6c976137d 590 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 10 589 2.3E-209 T 23-04-2016 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 SD28_RS03520 fc0fad4263fdb736a336443ccf626a7b 218 PANTHER PTHR32125:SF4 1 213 3.2E-49 T 23-04-2016 SD28_RS03520 fc0fad4263fdb736a336443ccf626a7b 218 Gene3D G3DSA:3.90.550.10 1 215 3.7E-48 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS03520 fc0fad4263fdb736a336443ccf626a7b 218 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1 212 9.8E-41 T 23-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS03520 fc0fad4263fdb736a336443ccf626a7b 218 PANTHER PTHR32125 1 213 3.2E-49 T 23-04-2016 SD28_RS03520 fc0fad4263fdb736a336443ccf626a7b 218 SUPERFAMILY SSF53448 1 216 9.38E-37 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 Gene3D G3DSA:3.30.250.10 269 324 1.3E-24 T 23-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 3 322 4.6E-167 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 PANTHER PTHR22942:SF1 3 334 2.0E-198 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 PRINTS PR00142 RecA protein signature 164 193 1.6E-82 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 PRINTS PR00142 RecA protein signature 209 237 1.6E-82 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 PRINTS PR00142 RecA protein signature 126 155 1.6E-82 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 PRINTS PR00142 RecA protein signature 92 121 1.6E-82 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 PRINTS PR00142 RecA protein signature 296 313 1.6E-82 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 PRINTS PR00142 RecA protein signature 242 271 1.6E-82 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 ProSitePatterns PS00321 recA signature. 212 220 - T 23-04-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 Pfam PF00154 recA bacterial DNA recombination protein 5 267 5.3E-143 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 SUPERFAMILY SSF54752 269 323 3.14E-19 T 23-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 PANTHER PTHR22942 3 334 2.0E-198 T 23-04-2016 SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 Hamap MF_00268 Protein RecA [recA]. 3 328 51.661 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 SUPERFAMILY SSF52540 4 266 6.36E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 Gene3D G3DSA:3.40.50.300 30 266 2.3E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01065 bf2fd79f8e308600c039dc8b32d75352 381 SMART SM00382 56 227 2.3E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS06155 c4ed97131a123a3ed1a7da6ef875f3a6 622 Gene3D G3DSA:1.25.40.20 351 538 4.3E-5 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS06155 c4ed97131a123a3ed1a7da6ef875f3a6 622 SUPERFAMILY SSF48371 295 519 1.55E-5 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 SD28_RS00695 a381a3fd944b388ff82f10a8b38e951e 297 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 297 31.55 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 SD28_RS00695 a381a3fd944b388ff82f10a8b38e951e 297 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 297 1.6E-88 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 SD28_RS00695 a381a3fd944b388ff82f10a8b38e951e 297 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 283 296 - T 23-04-2016 IPR023632 ATPase, F1 complex, gamma subunit conserved site SD28_RS00695 a381a3fd944b388ff82f10a8b38e951e 297 Gene3D G3DSA:1.10.287.80 19 60 4.9E-28 T 23-04-2016 SD28_RS00695 a381a3fd944b388ff82f10a8b38e951e 297 Gene3D G3DSA:1.10.287.80 212 245 4.9E-28 T 23-04-2016 SD28_RS00695 a381a3fd944b388ff82f10a8b38e951e 297 PRINTS PR00126 ATP synthase gamma subunit signature 169 186 3.0E-34 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 SD28_RS00695 a381a3fd944b388ff82f10a8b38e951e 297 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 3.0E-34 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 SD28_RS00695 a381a3fd944b388ff82f10a8b38e951e 297 PRINTS PR00126 ATP synthase gamma subunit signature 244 263 3.0E-34 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 SD28_RS00695 a381a3fd944b388ff82f10a8b38e951e 297 PRINTS PR00126 ATP synthase gamma subunit signature 275 296 3.0E-34 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 SD28_RS00695 a381a3fd944b388ff82f10a8b38e951e 297 PANTHER PTHR11693 1 297 1.9E-95 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 SD28_RS00695 a381a3fd944b388ff82f10a8b38e951e 297 Gene3D G3DSA:3.40.1380.10 65 195 5.6E-33 T 23-04-2016 SD28_RS00695 a381a3fd944b388ff82f10a8b38e951e 297 SUPERFAMILY SSF52943 3 297 4.84E-81 T 23-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain SD28_RS00695 a381a3fd944b388ff82f10a8b38e951e 297 Gene3D G3DSA:1.10.287.80 246 292 2.4E-27 T 23-04-2016 SD28_RS00695 a381a3fd944b388ff82f10a8b38e951e 297 Pfam PF00231 ATP synthase 4 296 8.8E-80 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 SD28_RS07475 2cb44248cd95c383739d3fa2abc7ce81 107 PANTHER PTHR10438 5 107 1.1E-37 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 SD28_RS07475 2cb44248cd95c383739d3fa2abc7ce81 107 SUPERFAMILY SSF52833 3 107 2.45E-38 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS07475 2cb44248cd95c383739d3fa2abc7ce81 107 PRINTS PR00421 Thioredoxin family signature 31 40 3.4E-10 T 23-04-2016 SD28_RS07475 2cb44248cd95c383739d3fa2abc7ce81 107 PRINTS PR00421 Thioredoxin family signature 23 31 3.4E-10 T 23-04-2016 SD28_RS07475 2cb44248cd95c383739d3fa2abc7ce81 107 PRINTS PR00421 Thioredoxin family signature 71 82 3.4E-10 T 23-04-2016 SD28_RS07475 2cb44248cd95c383739d3fa2abc7ce81 107 Pfam PF00085 Thioredoxin 5 105 1.1E-32 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 SD28_RS07475 2cb44248cd95c383739d3fa2abc7ce81 107 PIRSF PIRSF000077 1 107 5.2E-43 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 SD28_RS07475 2cb44248cd95c383739d3fa2abc7ce81 107 TIGRFAM TIGR01068 thioredoxin: thioredoxin 8 106 7.1E-39 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 SD28_RS07475 2cb44248cd95c383739d3fa2abc7ce81 107 Gene3D G3DSA:3.40.30.10 2 107 1.0E-37 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS07475 2cb44248cd95c383739d3fa2abc7ce81 107 ProSitePatterns PS00194 Thioredoxin family active site. 24 42 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 637 36.774 T 23-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 Gene3D G3DSA:3.30.420.40 4 52 2.5E-63 T 23-04-2016 SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 Gene3D G3DSA:3.30.420.40 121 194 2.5E-63 T 23-04-2016 SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 SUPERFAMILY SSF100920 386 542 9.16E-62 T 23-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 SUPERFAMILY SSF53067 1 184 1.41E-62 T 23-04-2016 SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 SUPERFAMILY SSF53067 189 384 2.3E-69 T 23-04-2016 SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 Pfam PF00012 Hsp70 protein 4 605 1.3E-261 T 23-04-2016 IPR013126 Heat shock protein 70 family SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 Gene3D G3DSA:3.90.640.10 232 317 3.4E-31 T 23-04-2016 SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 605 2.5E-289 T 23-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 PRINTS PR00301 70kDa heat shock protein signature 140 160 5.2E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 PRINTS PR00301 70kDa heat shock protein signature 471 487 5.2E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 PRINTS PR00301 70kDa heat shock protein signature 336 352 5.2E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 PRINTS PR00301 70kDa heat shock protein signature 3 16 5.2E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 PRINTS PR00301 70kDa heat shock protein signature 54 62 5.2E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 PRINTS PR00301 70kDa heat shock protein signature 367 387 5.2E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 PRINTS PR00301 70kDa heat shock protein signature 200 210 5.2E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 PRINTS PR00301 70kDa heat shock protein signature 31 43 5.2E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 PRINTS PR00301 70kDa heat shock protein signature 390 409 5.2E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 Gene3D G3DSA:1.20.1270.10 534 605 1.8E-26 T 23-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 PANTHER PTHR19375 2 641 0.0 T 23-04-2016 SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 194 207 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 Gene3D G3DSA:3.30.420.40 321 363 4.6E-34 T 23-04-2016 SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 Gene3D G3DSA:3.30.420.40 195 231 4.6E-34 T 23-04-2016 SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 Gene3D G3DSA:3.30.30.30 53 106 4.4E-25 T 23-04-2016 SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 339 353 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 SUPERFAMILY SSF100934 509 607 2.94E-17 T 23-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 PANTHER PTHR19375:SF173 2 641 0.0 T 23-04-2016 SD28_RS04020 c1604285dfb80d1212b35169d1d7280e 642 Gene3D G3DSA:2.60.34.10 392 533 3.6E-71 T 23-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain SD28_RS02430 bdce9c407f7d77c48e30035140f83d8e 206 Gene3D G3DSA:1.10.1050.10 1 98 4.6E-41 T 23-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 SD28_RS02430 bdce9c407f7d77c48e30035140f83d8e 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 1.8E-78 T 23-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 SD28_RS02430 bdce9c407f7d77c48e30035140f83d8e 206 SMART SM01390 3 95 8.4E-49 T 23-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 SD28_RS02430 bdce9c407f7d77c48e30035140f83d8e 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 34.075 T 23-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 SD28_RS02430 bdce9c407f7d77c48e30035140f83d8e 206 SUPERFAMILY SSF55174 3 206 1.47E-65 T 23-04-2016 SD28_RS02430 bdce9c407f7d77c48e30035140f83d8e 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 23-04-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 SD28_RS02430 bdce9c407f7d77c48e30035140f83d8e 206 SMART SM00363 96 160 5.1E-17 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 SD28_RS02430 bdce9c407f7d77c48e30035140f83d8e 206 Pfam PF01479 S4 domain 97 143 8.3E-15 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 SD28_RS02430 bdce9c407f7d77c48e30035140f83d8e 206 PANTHER PTHR11831 1 206 2.2E-88 T 23-04-2016 IPR022801 Ribosomal protein S4/S9 SD28_RS02430 bdce9c407f7d77c48e30035140f83d8e 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 2.5E-28 T 23-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 SD28_RS02430 bdce9c407f7d77c48e30035140f83d8e 206 PANTHER PTHR11831:SF4 1 206 2.2E-88 T 23-04-2016 SD28_RS02430 bdce9c407f7d77c48e30035140f83d8e 206 Gene3D G3DSA:3.10.290.10 99 198 8.2E-28 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 SD28_RS03165 52aa8742498fbc0b7106656624492ea6 334 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 10 31 2.0E-6 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS03165 52aa8742498fbc0b7106656624492ea6 334 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 11 32 6.2E-6 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS03165 52aa8742498fbc0b7106656624492ea6 334 SUPERFAMILY SSF54523 12 62 1.33E-5 T 23-04-2016 SD28_RS03165 52aa8742498fbc0b7106656624492ea6 334 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 10 30 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS02640 8db69a312fbd01ed4b54ab466a4e916a 169 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 5 169 18.468 T 23-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 SD28_RS02640 8db69a312fbd01ed4b54ab466a4e916a 169 SUPERFAMILY SSF50346 101 168 1.37E-15 T 23-04-2016 IPR011033 PRC-barrel-like SD28_RS02640 8db69a312fbd01ed4b54ab466a4e916a 169 Pfam PF05239 PRC-barrel domain 97 164 4.6E-5 T 23-04-2016 IPR027275 PRC-barrel domain SD28_RS02640 8db69a312fbd01ed4b54ab466a4e916a 169 SUPERFAMILY SSF50447 5 94 4.24E-12 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain SD28_RS02640 8db69a312fbd01ed4b54ab466a4e916a 169 Pfam PF01782 RimM N-terminal domain 7 90 1.9E-12 T 23-04-2016 IPR002676 RimM protein GO:0006364 SD28_RS02640 8db69a312fbd01ed4b54ab466a4e916a 169 Gene3D G3DSA:2.30.30.240 101 169 4.5E-19 T 23-04-2016 SD28_RS02640 8db69a312fbd01ed4b54ab466a4e916a 169 PANTHER PTHR33692 5 165 5.6E-33 T 23-04-2016 SD28_RS02640 8db69a312fbd01ed4b54ab466a4e916a 169 Gene3D G3DSA:2.40.30.60 3 94 1.6E-16 T 23-04-2016 IPR002676 RimM protein GO:0006364 SD28_RS02640 8db69a312fbd01ed4b54ab466a4e916a 169 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 6 167 6.1E-40 T 23-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 PRINTS PR00702 Acriflavin resistance protein family signature 530 554 8.7E-9 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 PRINTS PR00702 Acriflavin resistance protein family signature 605 628 8.7E-9 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 PRINTS PR00702 Acriflavin resistance protein family signature 476 499 8.7E-9 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 131 627 6.1E-125 T 23-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 Pfam PF02355 Protein export membrane protein 460 627 4.8E-23 T 23-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 374 621 1.1E-71 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 Gene3D G3DSA:1.20.1640.10 460 640 2.0E-26 T 23-04-2016 SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 PANTHER PTHR30081 338 637 1.8E-152 T 23-04-2016 SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 PANTHER PTHR30081 249 307 1.8E-152 T 23-04-2016 SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 PANTHER PTHR30081 9 181 1.8E-152 T 23-04-2016 SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 Pfam PF13721 SecD export protein N-terminal TM region 9 111 1.4E-28 T 23-04-2016 IPR027398 SecD export protein N-terminal TM domain SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 SUPERFAMILY SSF82866 438 636 2.09E-42 T 23-04-2016 SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 10 642 45.063 T 23-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 Pfam PF07549 SecD/SecF GG Motif 124 148 5.2E-5 T 23-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 PANTHER PTHR30081:SF1 338 637 1.8E-152 T 23-04-2016 SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 PANTHER PTHR30081:SF1 249 307 1.8E-152 T 23-04-2016 SD28_RS03710 29988ddcf67bf1bab0329bb20d290426 645 PANTHER PTHR30081:SF1 9 181 1.8E-152 T 23-04-2016 SD28_RS03370 32f0167530cb800dcd078285ed91cd58 339 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 7 325 35.661 T 23-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 SD28_RS03370 32f0167530cb800dcd078285ed91cd58 339 PANTHER PTHR22572:SF117 98 294 1.7E-48 T 23-04-2016 SD28_RS03370 32f0167530cb800dcd078285ed91cd58 339 PANTHER PTHR22572 98 294 1.7E-48 T 23-04-2016 SD28_RS03370 32f0167530cb800dcd078285ed91cd58 339 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 7 328 8.9E-111 T 23-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 SD28_RS03370 32f0167530cb800dcd078285ed91cd58 339 SUPERFAMILY SSF51161 31 314 9.71E-81 T 23-04-2016 IPR011004 Trimeric LpxA-like SD28_RS03370 32f0167530cb800dcd078285ed91cd58 339 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 21 86 8.5E-22 T 23-04-2016 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 UniPathway: UPA00973 SD28_RS03370 32f0167530cb800dcd078285ed91cd58 339 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 128 156 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 SD28_RS03370 32f0167530cb800dcd078285ed91cd58 339 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 104 132 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 SD28_RS03370 32f0167530cb800dcd078285ed91cd58 339 Gene3D G3DSA:2.160.10.10 152 308 6.7E-37 T 23-04-2016 SD28_RS03370 32f0167530cb800dcd078285ed91cd58 339 Gene3D G3DSA:2.160.10.10 98 151 1.6E-14 T 23-04-2016 SD28_RS03370 32f0167530cb800dcd078285ed91cd58 339 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 221 247 9.8E-5 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS03370 32f0167530cb800dcd078285ed91cd58 339 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 108 140 3.1E-10 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS03370 32f0167530cb800dcd078285ed91cd58 339 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 257 291 3.4E-5 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS03370 32f0167530cb800dcd078285ed91cd58 339 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 143 177 5.1E-7 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS06550 8b5a1d730018f15ab084febd69b1afbf 327 SUPERFAMILY SSF102114 59 317 4.58E-56 T 23-04-2016 SD28_RS06550 8b5a1d730018f15ab084febd69b1afbf 327 SMART SM00729 88 298 7.5E-9 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 SD28_RS06550 8b5a1d730018f15ab084febd69b1afbf 327 Pfam PF04055 Radical SAM superfamily 96 256 6.7E-11 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 SD28_RS06550 8b5a1d730018f15ab084febd69b1afbf 327 PIRSF PIRSF005963 4 327 2.2E-139 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 SD28_RS06550 8b5a1d730018f15ab084febd69b1afbf 327 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 22 77 1.9E-7 T 23-04-2016 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 SD28_RS06550 8b5a1d730018f15ab084febd69b1afbf 327 Gene3D G3DSA:3.20.20.70 58 320 3.8E-62 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS06550 8b5a1d730018f15ab084febd69b1afbf 327 PANTHER PTHR10949 35 326 7.0E-168 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 SD28_RS06550 8b5a1d730018f15ab084febd69b1afbf 327 Hamap MF_00206 Lipoyl synthase [lipA]. 41 327 132.036 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 SD28_RS06550 8b5a1d730018f15ab084febd69b1afbf 327 TIGRFAM TIGR00510 lipA: lipoyl synthase 33 324 1.4E-117 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 SD28_RS01635 0d0e6aad9ecce875e95167574d2fc045 223 PIRSF PIRSF004848 1 223 7.0E-68 T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 SD28_RS01635 0d0e6aad9ecce875e95167574d2fc045 223 PANTHER PTHR10146 7 220 1.9E-65 T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 SD28_RS01635 0d0e6aad9ecce875e95167574d2fc045 223 Gene3D G3DSA:3.20.20.10 15 220 1.3E-64 T 23-04-2016 IPR029066 PLP-binding barrel SD28_RS01635 0d0e6aad9ecce875e95167574d2fc045 223 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 67 81 - T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 SD28_RS01635 0d0e6aad9ecce875e95167574d2fc045 223 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 20 220 1.3E-47 T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 SD28_RS01635 0d0e6aad9ecce875e95167574d2fc045 223 SUPERFAMILY SSF51419 7 218 6.4E-60 T 23-04-2016 IPR029066 PLP-binding barrel SD28_RS01635 0d0e6aad9ecce875e95167574d2fc045 223 Pfam PF01168 Alanine racemase, N-terminal domain 3 220 1.1E-21 T 23-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS02895 03aec18b1fb95255d45546ac80f5a596 317 PANTHER PTHR10859 9 307 7.2E-128 T 23-04-2016 SD28_RS02895 03aec18b1fb95255d45546ac80f5a596 317 Pfam PF00535 Glycosyl transferase family 2 9 168 1.4E-25 T 23-04-2016 IPR001173 Glycosyltransferase 2-like SD28_RS02895 03aec18b1fb95255d45546ac80f5a596 317 PANTHER PTHR10859:SF81 9 307 7.2E-128 T 23-04-2016 SD28_RS02895 03aec18b1fb95255d45546ac80f5a596 317 SUPERFAMILY SSF53448 4 257 7.74E-34 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS02895 03aec18b1fb95255d45546ac80f5a596 317 Gene3D G3DSA:3.90.550.10 7 144 2.5E-23 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS00180 b8807f8760641b83d93c8b6ea6ebbe14 214 SUPERFAMILY SSF103088 73 196 1.57E-27 T 23-04-2016 IPR006665 OmpA-like domain SD28_RS00180 b8807f8760641b83d93c8b6ea6ebbe14 214 ProSitePatterns PS01068 OmpA-like domain. 111 155 - T 23-04-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 SD28_RS00180 b8807f8760641b83d93c8b6ea6ebbe14 214 Gene3D G3DSA:3.30.1330.60 75 197 2.9E-28 T 23-04-2016 IPR006665 OmpA-like domain SD28_RS00180 b8807f8760641b83d93c8b6ea6ebbe14 214 Pfam PF00691 OmpA family 78 162 1.1E-18 T 23-04-2016 IPR006665 OmpA-like domain SD28_RS00180 b8807f8760641b83d93c8b6ea6ebbe14 214 PRINTS PR01021 OMPA domain signature 124 140 1.1E-14 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 SD28_RS00180 b8807f8760641b83d93c8b6ea6ebbe14 214 PRINTS PR01021 OMPA domain signature 109 124 1.1E-14 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 SD28_RS00180 b8807f8760641b83d93c8b6ea6ebbe14 214 PRINTS PR01021 OMPA domain signature 79 101 1.1E-14 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 SD28_RS00180 b8807f8760641b83d93c8b6ea6ebbe14 214 PANTHER PTHR30128:SF18 9 161 4.2E-28 T 23-04-2016 SD28_RS00180 b8807f8760641b83d93c8b6ea6ebbe14 214 PANTHER PTHR30128 9 161 4.2E-28 T 23-04-2016 SD28_RS04985 3aa78dd9b415ca21a3b18115411e73f6 185 SMART SM00857 2 136 4.8E-57 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 SD28_RS04985 3aa78dd9b415ca21a3b18115411e73f6 185 Gene3D G3DSA:1.10.10.60 138 182 7.6E-9 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 SD28_RS04985 3aa78dd9b415ca21a3b18115411e73f6 185 PANTHER PTHR30461 3 180 2.3E-48 T 23-04-2016 SD28_RS04985 3aa78dd9b415ca21a3b18115411e73f6 185 SUPERFAMILY SSF53041 2 135 1.2E-43 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 SD28_RS04985 3aa78dd9b415ca21a3b18115411e73f6 185 SUPERFAMILY SSF46689 138 180 7.17E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 SD28_RS04985 3aa78dd9b415ca21a3b18115411e73f6 185 Gene3D G3DSA:3.40.50.1390 2 120 6.8E-41 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 SD28_RS04985 3aa78dd9b415ca21a3b18115411e73f6 185 Pfam PF02796 Helix-turn-helix domain of resolvase 138 182 1.3E-9 T 23-04-2016 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 SD28_RS04985 3aa78dd9b415ca21a3b18115411e73f6 185 Pfam PF00239 Resolvase, N terminal domain 3 135 1.1E-42 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 SD28_RS04950 c45cdc8b421f62a4cc99e2972a60e430 624 ProSitePatterns PS00211 ABC transporters family signature. 432 446 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS04950 c45cdc8b421f62a4cc99e2972a60e430 624 Pfam PF00005 ABC transporter 18 178 2.0E-24 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS04950 c45cdc8b421f62a4cc99e2972a60e430 624 Pfam PF00005 ABC transporter 329 460 8.0E-23 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS04950 c45cdc8b421f62a4cc99e2972a60e430 624 SMART SM00382 338 505 1.4E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS04950 c45cdc8b421f62a4cc99e2972a60e430 624 SMART SM00382 26 224 3.4E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS04950 c45cdc8b421f62a4cc99e2972a60e430 624 Gene3D G3DSA:3.40.50.300 1 266 3.6E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04950 c45cdc8b421f62a4cc99e2972a60e430 624 Gene3D G3DSA:3.40.50.300 313 535 3.6E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04950 c45cdc8b421f62a4cc99e2972a60e430 624 SUPERFAMILY SSF52540 304 511 6.62E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04950 c45cdc8b421f62a4cc99e2972a60e430 624 PANTHER PTHR19211:SF49 1 562 2.9E-254 T 23-04-2016 SD28_RS04950 c45cdc8b421f62a4cc99e2972a60e430 624 PANTHER PTHR19211 1 562 2.9E-254 T 23-04-2016 SD28_RS04950 c45cdc8b421f62a4cc99e2972a60e430 624 Pfam PF12848 ABC transporter 217 298 1.2E-25 T 23-04-2016 IPR032781 ABC-transporter extension domain SD28_RS04950 c45cdc8b421f62a4cc99e2972a60e430 624 SUPERFAMILY SSF52540 119 254 1.19E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04950 c45cdc8b421f62a4cc99e2972a60e430 624 SUPERFAMILY SSF52540 2 92 1.19E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05850 be79b106e2a3db0bf2673954c5e8ddee 278 Gene3D G3DSA:1.10.287.460 69 143 2.7E-14 T 23-04-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 SD28_RS05850 be79b106e2a3db0bf2673954c5e8ddee 278 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 173 274 1.5E-9 T 23-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 SD28_RS05850 be79b106e2a3db0bf2673954c5e8ddee 278 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 67 166 3.2E-13 T 23-04-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 SD28_RS05850 be79b106e2a3db0bf2673954c5e8ddee 278 Gene3D G3DSA:3.10.50.40 144 278 2.0E-26 T 23-04-2016 SD28_RS05850 be79b106e2a3db0bf2673954c5e8ddee 278 SUPERFAMILY SSF54534 68 278 5.38E-31 T 23-04-2016 SD28_RS04320 821e111c41a02c68b40702f1c9707c76 180 PIRSF PIRSF006118 1 174 7.4E-61 T 23-04-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 SD28_RS04320 821e111c41a02c68b40702f1c9707c76 180 PANTHER PTHR21485:SF3 8 175 2.1E-42 T 23-04-2016 SD28_RS04320 821e111c41a02c68b40702f1c9707c76 180 PANTHER PTHR21485 8 175 2.1E-42 T 23-04-2016 SD28_RS04320 821e111c41a02c68b40702f1c9707c76 180 SUPERFAMILY SSF56784 8 173 4.67E-37 T 23-04-2016 IPR023214 HAD-like domain SD28_RS04320 821e111c41a02c68b40702f1c9707c76 180 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 11 125 1.3E-14 T 23-04-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA SD28_RS04320 821e111c41a02c68b40702f1c9707c76 180 Pfam PF08282 haloacid dehalogenase-like hydrolase 70 148 6.2E-10 T 23-04-2016 IPR023214 HAD-like domain SD28_RS04320 821e111c41a02c68b40702f1c9707c76 180 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 10 161 6.0E-48 T 23-04-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 SD28_RS04320 821e111c41a02c68b40702f1c9707c76 180 Gene3D G3DSA:3.40.50.1000 7 169 1.3E-39 T 23-04-2016 IPR023214 HAD-like domain SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 Gene3D G3DSA:3.30.559.10 255 487 4.2E-89 T 23-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 PANTHER PTHR23151 1 128 9.7E-203 T 23-04-2016 SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 PANTHER PTHR23151 200 489 9.7E-203 T 23-04-2016 SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 260 487 1.3E-81 T 23-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 SUPERFAMILY SSF47005 197 242 1.96E-6 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 SUPERFAMILY SSF51230 105 184 6.02E-22 T 23-04-2016 IPR011053 Single hybrid motif SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 Pfam PF00364 Biotin-requiring enzyme 106 178 1.6E-17 T 23-04-2016 IPR000089 Biotin/lipoyl attachment SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 Pfam PF00364 Biotin-requiring enzyme 3 75 9.4E-18 T 23-04-2016 IPR000089 Biotin/lipoyl attachment SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 PANTHER PTHR23151:SF47 1 128 9.7E-203 T 23-04-2016 SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 PANTHER PTHR23151:SF47 200 489 9.7E-203 T 23-04-2016 SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 129 158 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 26 55 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 Gene3D G3DSA:4.10.320.10 196 242 3.9E-10 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 105 489 5.2E-159 T 23-04-2016 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|UniPathway: UPA00868 SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 SUPERFAMILY SSF52777 260 488 3.38E-89 T 23-04-2016 SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 SUPERFAMILY SSF51230 2 93 8.25E-23 T 23-04-2016 IPR011053 Single hybrid motif SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 Gene3D G3DSA:2.40.50.100 103 193 7.3E-23 T 23-04-2016 SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 Gene3D G3DSA:2.40.50.100 1 94 1.6E-23 T 23-04-2016 SD28_RS00850 1e3a5fe7239b94ff9cfbaa92204d549c 489 Pfam PF02817 e3 binding domain 204 238 2.5E-6 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 SD28_RS02830 3f0b76136e0760583af69a58f8d01e5c 155 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 155 1.4E-46 T 23-04-2016 IPR016051 Ribosomal RNA large subunit methyltransferase H GO:0005737|GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS02830 3f0b76136e0760583af69a58f8d01e5c 155 PANTHER PTHR33603 1 155 1.5E-51 T 23-04-2016 SD28_RS02830 3f0b76136e0760583af69a58f8d01e5c 155 SUPERFAMILY SSF75217 1 154 3.27E-46 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases SD28_RS02830 3f0b76136e0760583af69a58f8d01e5c 155 Pfam PF02590 Predicted SPOUT methyltransferase 1 154 1.1E-46 T 23-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS02830 3f0b76136e0760583af69a58f8d01e5c 155 Gene3D G3DSA:3.40.1280.10 1 155 4.8E-50 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal SD28_RS02830 3f0b76136e0760583af69a58f8d01e5c 155 PIRSF PIRSF004505 1 155 5.0E-45 T 23-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS02830 3f0b76136e0760583af69a58f8d01e5c 155 PANTHER PTHR33603:SF1 1 155 1.5E-51 T 23-04-2016 SD28_RS02830 3f0b76136e0760583af69a58f8d01e5c 155 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 27.263 T 23-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS02285 e0bf0bfc7779a3b2a341f61da3b2843d 198 PANTHER PTHR14269:SF13 3 148 1.6E-66 T 23-04-2016 SD28_RS02285 e0bf0bfc7779a3b2a341f61da3b2843d 198 PANTHER PTHR14269:SF13 165 190 1.6E-66 T 23-04-2016 SD28_RS02285 e0bf0bfc7779a3b2a341f61da3b2843d 198 PANTHER PTHR14269 3 148 1.6E-66 T 23-04-2016 SD28_RS02285 e0bf0bfc7779a3b2a341f61da3b2843d 198 PANTHER PTHR14269 165 190 1.6E-66 T 23-04-2016 SD28_RS02285 e0bf0bfc7779a3b2a341f61da3b2843d 198 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 71 6.8E-18 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 SD28_RS02285 e0bf0bfc7779a3b2a341f61da3b2843d 198 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 SD28_RS02285 e0bf0bfc7779a3b2a341f61da3b2843d 198 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3 189 5.9E-53 T 23-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 SD28_RS02285 e0bf0bfc7779a3b2a341f61da3b2843d 198 PIRSF PIRSF000847 1 198 1.8E-45 T 23-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 SD28_RS04560 8eadc6c17e381bbfdd7beafc3b6bf768 306 Pfam PF00892 EamA-like transporter family 7 141 1.1E-19 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 SD28_RS04560 8eadc6c17e381bbfdd7beafc3b6bf768 306 Pfam PF00892 EamA-like transporter family 160 297 5.7E-21 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 SD28_RS04560 8eadc6c17e381bbfdd7beafc3b6bf768 306 SUPERFAMILY SSF103481 41 144 6.67E-12 T 23-04-2016 SD28_RS04560 8eadc6c17e381bbfdd7beafc3b6bf768 306 PANTHER PTHR12715 1 299 8.6E-36 T 23-04-2016 SD28_RS04560 8eadc6c17e381bbfdd7beafc3b6bf768 306 SUPERFAMILY SSF103481 218 297 1.27E-11 T 23-04-2016 SD28_RS07670 c9c0c557daa62d4dd9dcbba8fb1a49c0 293 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 7 284 1.5E-10 T 23-04-2016 IPR001087 GDSL lipase/esterase GO:0016788 SD28_RS07670 c9c0c557daa62d4dd9dcbba8fb1a49c0 293 SUPERFAMILY SSF52266 261 287 1.11E-16 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain SD28_RS07670 c9c0c557daa62d4dd9dcbba8fb1a49c0 293 SUPERFAMILY SSF52266 3 227 1.11E-16 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain SD28_RS07670 c9c0c557daa62d4dd9dcbba8fb1a49c0 293 PANTHER PTHR22835:SF222 3 286 7.3E-33 T 23-04-2016 SD28_RS07670 c9c0c557daa62d4dd9dcbba8fb1a49c0 293 PANTHER PTHR22835 3 286 7.3E-33 T 23-04-2016 SD28_RS07670 c9c0c557daa62d4dd9dcbba8fb1a49c0 293 Gene3D G3DSA:3.40.50.1110 3 287 9.0E-57 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain SD28_RS07670 c9c0c557daa62d4dd9dcbba8fb1a49c0 293 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 7 18 - T 23-04-2016 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 PANTHER PTHR11922 1 190 6.2E-64 T 23-04-2016 SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 Gene3D G3DSA:3.40.50.880 3 191 1.2E-52 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 PANTHER PTHR11922:SF25 1 190 6.2E-64 T 23-04-2016 SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 Pfam PF00117 Glutamine amidotransferase class-I 6 186 4.1E-41 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 PRINTS PR00097 Anthranilate synthase component II signature 104 112 7.9E-34 T 23-04-2016 SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 PRINTS PR00097 Anthranilate synthase component II signature 79 90 7.9E-34 T 23-04-2016 SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 PRINTS PR00097 Anthranilate synthase component II signature 4 18 7.9E-34 T 23-04-2016 SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 PRINTS PR00097 Anthranilate synthase component II signature 124 136 7.9E-34 T 23-04-2016 SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 PRINTS PR00097 Anthranilate synthase component II signature 52 61 7.9E-34 T 23-04-2016 SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 PRINTS PR00097 Anthranilate synthase component II signature 166 179 7.9E-34 T 23-04-2016 SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 4.3E-14 T 23-04-2016 SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 4.3E-14 T 23-04-2016 SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 4.3E-14 T 23-04-2016 SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 SUPERFAMILY SSF52317 3 191 1.15E-43 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 4 188 6.1E-55 T 23-04-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 3.1E-6 T 23-04-2016 SD28_RS01310 ca53cfebf3310e0d0a31d586d8681c1b 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 3.1E-6 T 23-04-2016 SD28_RS07645 ffdeb8df90c61c3de6ad5703e02e1845 306 SUPERFAMILY SSF52374 14 184 3.44E-32 T 23-04-2016 SD28_RS07645 ffdeb8df90c61c3de6ad5703e02e1845 306 Gene3D G3DSA:3.40.50.620 8 185 4.4E-56 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS07645 ffdeb8df90c61c3de6ad5703e02e1845 306 Pfam PF06574 FAD synthetase 11 165 1.7E-48 T 23-04-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 SD28_RS07645 ffdeb8df90c61c3de6ad5703e02e1845 306 SMART SM00904 182 304 6.4E-43 T 23-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 SD28_RS07645 ffdeb8df90c61c3de6ad5703e02e1845 306 PANTHER PTHR22749:SF0 15 303 1.4E-98 T 23-04-2016 SD28_RS07645 ffdeb8df90c61c3de6ad5703e02e1845 306 Pfam PF01687 Riboflavin kinase 183 302 4.4E-32 T 23-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 SD28_RS07645 ffdeb8df90c61c3de6ad5703e02e1845 306 SUPERFAMILY SSF82114 174 304 3.27E-36 T 23-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 SD28_RS07645 ffdeb8df90c61c3de6ad5703e02e1845 306 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 303 4.6E-82 T 23-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 SD28_RS07645 ffdeb8df90c61c3de6ad5703e02e1845 306 PANTHER PTHR22749 15 303 1.4E-98 T 23-04-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 SD28_RS07645 ffdeb8df90c61c3de6ad5703e02e1845 306 Gene3D G3DSA:2.40.30.30 188 304 1.0E-33 T 23-04-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 SD28_RS07645 ffdeb8df90c61c3de6ad5703e02e1845 306 PIRSF PIRSF004491 1 306 8.1E-96 T 23-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 SD28_RS04195 bd21eeb66e2a6595c89f4cdfe7ed2f8f 407 PIRSF PIRSF005572 21 407 1.3E-47 T 23-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 SD28_RS04195 bd21eeb66e2a6595c89f4cdfe7ed2f8f 407 SUPERFAMILY SSF53383 3 404 5.56E-115 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS04195 bd21eeb66e2a6595c89f4cdfe7ed2f8f 407 Gene3D G3DSA:3.40.640.10 35 284 3.1E-77 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS04195 bd21eeb66e2a6595c89f4cdfe7ed2f8f 407 PANTHER PTHR11601 6 407 4.2E-172 T 23-04-2016 SD28_RS04195 bd21eeb66e2a6595c89f4cdfe7ed2f8f 407 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 218 237 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site SD28_RS04195 bd21eeb66e2a6595c89f4cdfe7ed2f8f 407 Gene3D G3DSA:3.90.1150.10 285 401 3.0E-27 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS04195 bd21eeb66e2a6595c89f4cdfe7ed2f8f 407 Pfam PF00266 Aminotransferase class-V 24 395 2.0E-138 T 23-04-2016 IPR000192 Aminotransferase class V domain SD28_RS04195 bd21eeb66e2a6595c89f4cdfe7ed2f8f 407 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 6 405 1.5E-165 T 23-04-2016 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 SD28_RS04195 bd21eeb66e2a6595c89f4cdfe7ed2f8f 407 PANTHER PTHR11601:SF17 6 407 4.2E-172 T 23-04-2016 SD28_RS05535 39eb6f2b725401f0047bd30a584cd38c 907 PANTHER PTHR11748 3 182 7.1E-185 T 23-04-2016 SD28_RS05535 39eb6f2b725401f0047bd30a584cd38c 907 PANTHER PTHR11748 219 561 7.1E-185 T 23-04-2016 SD28_RS05535 39eb6f2b725401f0047bd30a584cd38c 907 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 539 550 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SD28_RS05535 39eb6f2b725401f0047bd30a584cd38c 907 PANTHER PTHR11748:SF65 3 182 7.1E-185 T 23-04-2016 SD28_RS05535 39eb6f2b725401f0047bd30a584cd38c 907 PANTHER PTHR11748:SF65 219 561 7.1E-185 T 23-04-2016 SD28_RS05535 39eb6f2b725401f0047bd30a584cd38c 907 Pfam PF13183 4Fe-4S dicluster domain 536 605 1.5E-8 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SD28_RS05535 39eb6f2b725401f0047bd30a584cd38c 907 Gene3D G3DSA:3.30.465.10 99 183 2.2E-16 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 SD28_RS05535 39eb6f2b725401f0047bd30a584cd38c 907 Gene3D G3DSA:3.30.465.10 215 263 2.2E-16 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 SD28_RS05535 39eb6f2b725401f0047bd30a584cd38c 907 SUPERFAMILY SSF56176 7 263 5.72E-47 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 SD28_RS05535 39eb6f2b725401f0047bd30a584cd38c 907 SUPERFAMILY SSF55103 272 517 2.13E-43 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 SD28_RS05535 39eb6f2b725401f0047bd30a584cd38c 907 Gene3D G3DSA:3.30.43.10 7 87 1.9E-13 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 SD28_RS05535 39eb6f2b725401f0047bd30a584cd38c 907 Pfam PF01565 FAD binding domain 39 177 1.1E-26 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 SD28_RS05535 39eb6f2b725401f0047bd30a584cd38c 907 Gene3D G3DSA:1.10.1060.10 492 619 1.6E-19 T 23-04-2016 SD28_RS05535 39eb6f2b725401f0047bd30a584cd38c 907 SUPERFAMILY SSF46548 493 618 4.71E-18 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 SD28_RS05535 39eb6f2b725401f0047bd30a584cd38c 907 Pfam PF02913 FAD linked oxidases, C-terminal domain 274 512 6.3E-43 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 SD28_RS06935 7213f459c3ff4bf261d627c406771a71 198 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 192 1.5E-57 T 23-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 SD28_RS06935 7213f459c3ff4bf261d627c406771a71 198 Pfam PF01725 Ham1 family 4 189 3.5E-51 T 23-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 SD28_RS06935 7213f459c3ff4bf261d627c406771a71 198 Gene3D G3DSA:3.90.950.10 1 194 2.1E-71 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like SD28_RS06935 7213f459c3ff4bf261d627c406771a71 198 PANTHER PTHR11067:SF9 1 196 3.8E-71 T 23-04-2016 SD28_RS06935 7213f459c3ff4bf261d627c406771a71 198 SUPERFAMILY SSF52972 1 193 1.73E-66 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like SD28_RS06935 7213f459c3ff4bf261d627c406771a71 198 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 2 194 46.608 T 23-04-2016 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 SD28_RS06935 7213f459c3ff4bf261d627c406771a71 198 PANTHER PTHR11067 1 196 3.8E-71 T 23-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 SD28_RS04210 81652b9c4f943d1b6843999823629276 163 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 5 159 7.3E-53 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 SD28_RS04210 81652b9c4f943d1b6843999823629276 163 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 59 1.1E-14 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 SD28_RS04210 81652b9c4f943d1b6843999823629276 163 PANTHER PTHR21342:SF1 1 163 6.3E-63 T 23-04-2016 SD28_RS04210 81652b9c4f943d1b6843999823629276 163 Gene3D G3DSA:3.40.50.620 4 160 6.3E-49 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS04210 81652b9c4f943d1b6843999823629276 163 Pfam PF01467 Cytidylyltransferase-like 7 135 3.1E-16 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 SD28_RS04210 81652b9c4f943d1b6843999823629276 163 SUPERFAMILY SSF52374 4 159 8.04E-40 T 23-04-2016 SD28_RS04210 81652b9c4f943d1b6843999823629276 163 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 4 161 31.989 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 SD28_RS04210 81652b9c4f943d1b6843999823629276 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 87 103 8.9E-40 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 SD28_RS04210 81652b9c4f943d1b6843999823629276 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 114 136 8.9E-40 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 SD28_RS04210 81652b9c4f943d1b6843999823629276 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 51 75 8.9E-40 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 SD28_RS04210 81652b9c4f943d1b6843999823629276 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 22 43 8.9E-40 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 SD28_RS04210 81652b9c4f943d1b6843999823629276 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 4 22 8.9E-40 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 SD28_RS04210 81652b9c4f943d1b6843999823629276 163 PANTHER PTHR21342 1 163 6.3E-63 T 23-04-2016 SD28_RS02400 30fc9c3e82848ea0370851629644b781 61 SUPERFAMILY SSF55129 5 60 3.66E-18 T 23-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain SD28_RS02400 30fc9c3e82848ea0370851629644b781 61 Gene3D G3DSA:3.30.1390.20 4 60 6.8E-24 T 23-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain SD28_RS02400 30fc9c3e82848ea0370851629644b781 61 PANTHER PTHR15892 4 60 3.9E-21 T 23-04-2016 SD28_RS02400 30fc9c3e82848ea0370851629644b781 61 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 4 61 18.283 T 23-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 SD28_RS02400 30fc9c3e82848ea0370851629644b781 61 PIRSF PIRSF002211 1 61 7.9E-23 T 23-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 SD28_RS02400 30fc9c3e82848ea0370851629644b781 61 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 8 60 2.0E-18 T 23-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 SD28_RS02400 30fc9c3e82848ea0370851629644b781 61 Pfam PF00327 Ribosomal protein L30p/L7e 8 57 1.6E-15 T 23-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain SD28_RS01070 f82310a11b4059c47601ad4c86d6f7e6 149 PANTHER PTHR36918 2 142 4.6E-52 T 23-04-2016 SD28_RS01070 f82310a11b4059c47601ad4c86d6f7e6 149 SUPERFAMILY SSF54611 2 140 2.4E-45 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS01070 f82310a11b4059c47601ad4c86d6f7e6 149 Hamap MF_00821 Protein-export protein SecB [secB]. 1 144 28.567 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS01070 f82310a11b4059c47601ad4c86d6f7e6 149 PANTHER PTHR36918:SF1 2 142 4.6E-52 T 23-04-2016 SD28_RS01070 f82310a11b4059c47601ad4c86d6f7e6 149 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 4 139 6.9E-45 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS01070 f82310a11b4059c47601ad4c86d6f7e6 149 Pfam PF02556 Preprotein translocase subunit SecB 3 141 4.5E-49 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS01070 f82310a11b4059c47601ad4c86d6f7e6 149 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 72 92 8.0E-29 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS01070 f82310a11b4059c47601ad4c86d6f7e6 149 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 122 140 8.0E-29 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS01070 f82310a11b4059c47601ad4c86d6f7e6 149 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 11 28 8.0E-29 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS01070 f82310a11b4059c47601ad4c86d6f7e6 149 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 96 118 8.0E-29 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS01070 f82310a11b4059c47601ad4c86d6f7e6 149 Gene3D G3DSA:3.10.420.10 2 147 9.3E-51 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS06370 1099e0bd238ed070cabf9e078ea1d2ba 127 SUPERFAMILY SSF51230 3 126 7.23E-47 T 23-04-2016 IPR011053 Single hybrid motif SD28_RS06370 1099e0bd238ed070cabf9e078ea1d2ba 127 Pfam PF01597 Glycine cleavage H-protein 8 126 1.8E-46 T 23-04-2016 IPR002930 Glycine cleavage system H-protein SD28_RS06370 1099e0bd238ed070cabf9e078ea1d2ba 127 PANTHER PTHR11715 1 123 7.0E-64 T 23-04-2016 IPR002930 Glycine cleavage system H-protein SD28_RS06370 1099e0bd238ed070cabf9e078ea1d2ba 127 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 126 30.873 T 23-04-2016 IPR002930 Glycine cleavage system H-protein SD28_RS06370 1099e0bd238ed070cabf9e078ea1d2ba 127 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 126 9.5E-51 T 23-04-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 SD28_RS06370 1099e0bd238ed070cabf9e078ea1d2ba 127 Gene3D G3DSA:2.40.50.100 7 126 1.9E-51 T 23-04-2016 SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 PANTHER PTHR13789:SF225 1 451 2.6E-22 T 23-04-2016 SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 PANTHER PTHR13789 1 451 2.6E-22 T 23-04-2016 SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 Gene3D G3DSA:3.30.70.1450 375 450 9.1E-4 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 SUPERFAMILY SSF51735 228 371 3.94E-23 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 SUPERFAMILY SSF51735 1 143 2.9E-27 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 Gene3D G3DSA:3.40.50.720 1 134 3.8E-29 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 2.8E-11 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 PRINTS PR00335 TrkA potassium uptake protein signature 18 32 2.8E-11 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 PRINTS PR00335 TrkA potassium uptake protein signature 59 69 2.8E-11 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 PRINTS PR00335 TrkA potassium uptake protein signature 48 58 2.8E-11 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 PRINTS PR00335 TrkA potassium uptake protein signature 72 86 2.8E-11 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 SUPERFAMILY SSF116726 142 209 2.22E-7 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 Gene3D G3DSA:3.30.70.1450 148 203 2.6E-4 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 Gene3D G3DSA:3.40.50.720 228 372 1.2E-26 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 SUPERFAMILY SSF116726 369 445 8.63E-8 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 Pfam PF02254 TrkA-N domain 230 346 1.8E-17 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 SD28_RS05375 0606a4ac471adcc610614227f04d4ee1 456 Pfam PF02254 TrkA-N domain 3 108 2.4E-22 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 SD28_RS03515 0f09eb6a794647eae80eec576ff8df92 97 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 97 22.215 T 23-04-2016 IPR023081 Cell division protein FtsB SD28_RS03515 0f09eb6a794647eae80eec576ff8df92 97 PANTHER PTHR37485 11 96 1.8E-15 T 23-04-2016 SD28_RS03515 0f09eb6a794647eae80eec576ff8df92 97 Pfam PF04977 Septum formation initiator 20 96 2.8E-14 T 23-04-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 SD28_RS03515 0f09eb6a794647eae80eec576ff8df92 97 PANTHER PTHR37485:SF1 11 96 1.8E-15 T 23-04-2016 SD28_RS04915 a6108c6c11bff57b6824144559b6e6de 370 PIRSF PIRSF001361 2 356 3.2E-156 T 23-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 SD28_RS04915 a6108c6c11bff57b6824144559b6e6de 370 Gene3D G3DSA:3.20.20.70 14 356 2.7E-150 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS04915 a6108c6c11bff57b6824144559b6e6de 370 PANTHER PTHR21225 9 365 1.3E-214 T 23-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 SD28_RS04915 a6108c6c11bff57b6824144559b6e6de 370 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 12 353 1.8E-154 T 23-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 SD28_RS04915 a6108c6c11bff57b6824144559b6e6de 370 SUPERFAMILY SSF51569 12 352 7.99E-125 T 23-04-2016 SD28_RS04915 a6108c6c11bff57b6824144559b6e6de 370 Pfam PF00793 DAHP synthetase I family 44 342 5.2E-97 T 23-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 SD28_RS06350 2f5fa919fc33819e317fe1f08119bdc1 530 Pfam PF02875 Mur ligase family, glutamate ligase domain 379 460 2.2E-24 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS06350 2f5fa919fc33819e317fe1f08119bdc1 530 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 116 529 1.3E-123 T 23-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 SD28_RS06350 2f5fa919fc33819e317fe1f08119bdc1 530 SUPERFAMILY SSF53244 379 529 3.14E-44 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS06350 2f5fa919fc33819e317fe1f08119bdc1 530 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 2 530 27.714 T 23-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 SD28_RS06350 2f5fa919fc33819e317fe1f08119bdc1 530 PANTHER PTHR23135 10 530 3.6E-136 T 23-04-2016 SD28_RS06350 2f5fa919fc33819e317fe1f08119bdc1 530 Gene3D G3DSA:3.40.1190.10 141 382 5.0E-59 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS06350 2f5fa919fc33819e317fe1f08119bdc1 530 Gene3D G3DSA:3.40.1390.10 15 82 6.2E-15 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS06350 2f5fa919fc33819e317fe1f08119bdc1 530 Gene3D G3DSA:3.40.1390.10 116 136 6.2E-15 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS06350 2f5fa919fc33819e317fe1f08119bdc1 530 SUPERFAMILY SSF63418 9 74 4.32E-14 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS06350 2f5fa919fc33819e317fe1f08119bdc1 530 Gene3D G3DSA:3.90.190.20 383 525 4.6E-48 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS06350 2f5fa919fc33819e317fe1f08119bdc1 530 PANTHER PTHR23135:SF4 10 530 3.6E-136 T 23-04-2016 SD28_RS06350 2f5fa919fc33819e317fe1f08119bdc1 530 Pfam PF01225 Mur ligase family, catalytic domain 23 87 4.0E-5 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS06350 2f5fa919fc33819e317fe1f08119bdc1 530 Pfam PF08245 Mur ligase middle domain 146 359 4.4E-40 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS06350 2f5fa919fc33819e317fe1f08119bdc1 530 SUPERFAMILY SSF53623 142 361 4.12E-55 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS05185 55311d4139fd0fbdf8c9dfc79030994b 348 SUPERFAMILY SSF52540 25 257 2.86E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05185 55311d4139fd0fbdf8c9dfc79030994b 348 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 258 331 7.2E-33 T 23-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 SD28_RS05185 55311d4139fd0fbdf8c9dfc79030994b 348 Gene3D G3DSA:1.10.8.60 189 259 1.1E-34 T 23-04-2016 SD28_RS05185 55311d4139fd0fbdf8c9dfc79030994b 348 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 28 331 4.4E-146 T 23-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 SD28_RS05185 55311d4139fd0fbdf8c9dfc79030994b 348 Gene3D G3DSA:3.40.50.300 25 182 1.1E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05185 55311d4139fd0fbdf8c9dfc79030994b 348 PANTHER PTHR13779 1 338 2.0E-184 T 23-04-2016 SD28_RS05185 55311d4139fd0fbdf8c9dfc79030994b 348 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 255 329 5.0E-37 T 23-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 SD28_RS05185 55311d4139fd0fbdf8c9dfc79030994b 348 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 348 179.639 T 23-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 SD28_RS05185 55311d4139fd0fbdf8c9dfc79030994b 348 SUPERFAMILY SSF46785 261 335 1.54E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS05185 55311d4139fd0fbdf8c9dfc79030994b 348 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 14 240 4.2E-118 T 23-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 SD28_RS05185 55311d4139fd0fbdf8c9dfc79030994b 348 SMART SM00382 56 183 3.8E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS05185 55311d4139fd0fbdf8c9dfc79030994b 348 Gene3D G3DSA:1.10.10.10 262 333 2.7E-34 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS05185 55311d4139fd0fbdf8c9dfc79030994b 348 PANTHER PTHR13779:SF25 1 338 2.0E-184 T 23-04-2016 SD28_RS00350 11cc6282ea3c15e1da29048385bdd8f4 439 Pfam PF01476 LysM domain 27 81 2.1E-7 T 23-04-2016 IPR018392 LysM domain SD28_RS00350 11cc6282ea3c15e1da29048385bdd8f4 439 SMART SM00257 26 81 0.0014 T 23-04-2016 IPR018392 LysM domain SD28_RS00350 11cc6282ea3c15e1da29048385bdd8f4 439 Gene3D G3DSA:1.25.40.10 331 403 3.3E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS00350 11cc6282ea3c15e1da29048385bdd8f4 439 Gene3D G3DSA:3.10.350.10 25 81 2.7E-8 T 23-04-2016 IPR018392 LysM domain SD28_RS04420 1fe5abfcdbcce886ec87b9c59046b0f2 421 Pfam PF00809 Pterin binding enzyme 173 419 4.2E-43 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 SD28_RS04420 1fe5abfcdbcce886ec87b9c59046b0f2 421 PANTHER PTHR20941:SF1 4 419 1.2E-77 T 23-04-2016 SD28_RS04420 1fe5abfcdbcce886ec87b9c59046b0f2 421 SUPERFAMILY SSF55083 2 144 5.36E-35 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 SD28_RS04420 1fe5abfcdbcce886ec87b9c59046b0f2 421 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 4 137 4.8E-27 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 SD28_RS04420 1fe5abfcdbcce886ec87b9c59046b0f2 421 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 137 3.8E-28 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 SD28_RS04420 1fe5abfcdbcce886ec87b9c59046b0f2 421 Gene3D G3DSA:3.30.70.560 2 145 3.2E-39 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 SD28_RS04420 1fe5abfcdbcce886ec87b9c59046b0f2 421 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 204 217 - T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 SD28_RS04420 1fe5abfcdbcce886ec87b9c59046b0f2 421 PANTHER PTHR20941 4 419 1.2E-77 T 23-04-2016 SD28_RS04420 1fe5abfcdbcce886ec87b9c59046b0f2 421 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 173 421 1.9E-49 T 23-04-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 SD28_RS04420 1fe5abfcdbcce886ec87b9c59046b0f2 421 SUPERFAMILY SSF51717 165 420 1.44E-48 T 23-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 SD28_RS04420 1fe5abfcdbcce886ec87b9c59046b0f2 421 Gene3D G3DSA:3.20.20.20 167 420 4.9E-53 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 SD28_RS01345 a1ac81cb990508d1b9f8056e3e90ab51 820 Pfam PF02839 Carbohydrate binding domain 265 303 1.3E-10 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS01345 a1ac81cb990508d1b9f8056e3e90ab51 820 Pfam PF00704 Glycosyl hydrolases family 18 492 761 4.9E-19 T 23-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 SD28_RS01345 a1ac81cb990508d1b9f8056e3e90ab51 820 SMART SM00636 490 798 0.001 T 23-04-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 SD28_RS01345 a1ac81cb990508d1b9f8056e3e90ab51 820 SUPERFAMILY SSF51055 258 307 3.73E-13 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS01345 a1ac81cb990508d1b9f8056e3e90ab51 820 ProSitePatterns PS01095 Chitinases family 18 active site. 605 613 - T 23-04-2016 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 SD28_RS01345 a1ac81cb990508d1b9f8056e3e90ab51 820 SMART SM00495 25 79 0.12 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS01345 a1ac81cb990508d1b9f8056e3e90ab51 820 SMART SM00495 264 306 2.7E-10 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS01345 a1ac81cb990508d1b9f8056e3e90ab51 820 Gene3D G3DSA:3.20.20.80 490 807 2.3E-32 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 SD28_RS01345 a1ac81cb990508d1b9f8056e3e90ab51 820 SUPERFAMILY SSF51445 726 805 9.58E-29 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily SD28_RS01345 a1ac81cb990508d1b9f8056e3e90ab51 820 SUPERFAMILY SSF51445 489 692 9.58E-29 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily SD28_RS01345 a1ac81cb990508d1b9f8056e3e90ab51 820 Gene3D G3DSA:2.10.10.20 261 307 2.4E-14 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS04545 e2c89fdba2382fe818fa2a89d0e960c9 376 Gene3D G3DSA:3.30.70.1350 207 286 2.3E-21 T 23-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain SD28_RS04545 e2c89fdba2382fe818fa2a89d0e960c9 376 PANTHER PTHR11562:SF18 1 304 1.2E-89 T 23-04-2016 SD28_RS04545 e2c89fdba2382fe818fa2a89d0e960c9 376 SUPERFAMILY SSF160240 210 287 8.63E-18 T 23-04-2016 SD28_RS04545 e2c89fdba2382fe818fa2a89d0e960c9 376 PANTHER PTHR11562 1 304 1.2E-89 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 SD28_RS04545 e2c89fdba2382fe818fa2a89d0e960c9 376 SUPERFAMILY SSF161111 6 207 7.32E-55 T 23-04-2016 SD28_RS04545 e2c89fdba2382fe818fa2a89d0e960c9 376 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 10 288 5.8E-71 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 SD28_RS04545 e2c89fdba2382fe818fa2a89d0e960c9 376 Pfam PF01545 Cation efflux family 14 205 1.3E-45 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 SD28_RS04545 e2c89fdba2382fe818fa2a89d0e960c9 376 Gene3D G3DSA:1.20.1510.10 10 205 1.9E-48 T 23-04-2016 IPR027469 Cation efflux protein transmembrane domain SD28_RS04545 e2c89fdba2382fe818fa2a89d0e960c9 376 Pfam PF16916 Dimerisation domain of Zinc Transporter 211 286 5.6E-20 T 23-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain SD28_RS04945 f8f0a3d5b92f1b1f79f894ee57d15ace 335 Gene3D G3DSA:3.40.630.10 37 218 6.9E-10 T 23-04-2016 SD28_RS04945 f8f0a3d5b92f1b1f79f894ee57d15ace 335 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 44 309 7.2E-32 T 23-04-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 SD28_RS04945 f8f0a3d5b92f1b1f79f894ee57d15ace 335 SUPERFAMILY SSF53187 32 310 6.63E-34 T 23-04-2016 SD28_RS04945 f8f0a3d5b92f1b1f79f894ee57d15ace 335 PANTHER PTHR37326 1 331 3.3E-63 T 23-04-2016 SD28_RS04945 f8f0a3d5b92f1b1f79f894ee57d15ace 335 PANTHER PTHR37326:SF1 1 331 3.3E-63 T 23-04-2016 SD28_RS04945 f8f0a3d5b92f1b1f79f894ee57d15ace 335 PIRSF PIRSF039012 1 317 1.2E-88 T 23-04-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 SD28_RS06645 ae7e07a9bb8f221db813003f373c9f04 272 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 3 181 5.1E-29 T 23-04-2016 IPR002654 Glycosyl transferase, family 25 SD28_RS06645 ae7e07a9bb8f221db813003f373c9f04 272 PANTHER PTHR10730 6 170 2.9E-14 T 23-04-2016 SD28_RS06645 ae7e07a9bb8f221db813003f373c9f04 272 PANTHER PTHR10730:SF27 6 170 2.9E-14 T 23-04-2016 SD28_RS03590 887e02c1c9eed799cdcb7bec12c4a530 350 PANTHER PTHR30106 8 350 1.8E-109 T 23-04-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 SD28_RS03590 887e02c1c9eed799cdcb7bec12c4a530 350 PANTHER PTHR30106:SF2 8 350 1.8E-109 T 23-04-2016 SD28_RS03590 887e02c1c9eed799cdcb7bec12c4a530 350 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 10 350 1.8E-89 T 23-04-2016 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 SD28_RS03590 887e02c1c9eed799cdcb7bec12c4a530 350 Pfam PF03601 Conserved hypothetical protein 698 12 328 5.0E-92 T 23-04-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 SUPERFAMILY SSF51055 722 764 9.16E-14 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 Pfam PF02839 Carbohydrate binding domain 725 762 1.7E-13 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 Pfam PF02839 Carbohydrate binding domain 770 808 5.0E-10 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 SUPERFAMILY SSF51445 191 227 1.41E-12 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 SUPERFAMILY SSF51445 110 146 1.41E-12 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 SUPERFAMILY SSF51445 27 74 1.41E-12 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 SUPERFAMILY SSF51445 293 406 1.41E-12 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 SUPERFAMILY SSF49265 544 719 9.33E-13 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 SMART SM00060 538 613 0.29 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 SMART SM00060 630 709 10.0 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 Gene3D G3DSA:2.10.10.20 769 811 1.6E-15 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 Gene3D G3DSA:2.10.10.20 722 764 1.2E-16 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 SMART SM00495 769 811 7.7E-10 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 SMART SM00495 723 765 3.6E-13 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 SUPERFAMILY SSF51055 770 811 7.46E-13 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 Gene3D G3DSA:3.20.20.80 362 496 2.2E-9 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 Gene3D G3DSA:3.20.20.80 188 243 2.2E-9 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 Gene3D G3DSA:3.20.20.80 298 328 2.2E-9 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 Gene3D G3DSA:2.60.40.10 544 623 2.3E-6 T 23-04-2016 IPR013783 Immunoglobulin-like fold SD28_RS03545 466582e292d3e4a688eaf2dc745c7865 812 Gene3D G3DSA:2.60.40.10 636 721 4.4E-5 T 23-04-2016 IPR013783 Immunoglobulin-like fold SD28_RS03415 2c18d1548987bb060724135fdb18419a 329 Pfam PF01207 Dihydrouridine synthase (Dus) 10 313 3.2E-78 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 SD28_RS03415 2c18d1548987bb060724135fdb18419a 329 SUPERFAMILY SSF51395 7 306 1.36E-64 T 23-04-2016 SD28_RS03415 2c18d1548987bb060724135fdb18419a 329 Gene3D G3DSA:3.20.20.70 5 247 1.3E-71 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS03415 2c18d1548987bb060724135fdb18419a 329 PANTHER PTHR11082:SF29 4 312 2.2E-123 T 23-04-2016 SD28_RS03415 2c18d1548987bb060724135fdb18419a 329 PIRSF PIRSF006621 1 324 9.5E-71 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 SD28_RS03415 2c18d1548987bb060724135fdb18419a 329 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 2 327 44.695 T 23-04-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 SD28_RS03415 2c18d1548987bb060724135fdb18419a 329 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 6 325 5.5E-127 T 23-04-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 SD28_RS03415 2c18d1548987bb060724135fdb18419a 329 PANTHER PTHR11082 4 312 2.2E-123 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 SD28_RS01655 21b756a7d1c33c6d87961010e38445cc 90 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 2.0E-25 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS01655 21b756a7d1c33c6d87961010e38445cc 90 Pfam PF01649 Ribosomal protein S20 2 84 1.4E-27 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS01655 21b756a7d1c33c6d87961010e38445cc 90 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 90 6.0E-34 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS01655 21b756a7d1c33c6d87961010e38445cc 90 Gene3D G3DSA:1.20.58.110 1 87 5.3E-30 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS01655 21b756a7d1c33c6d87961010e38445cc 90 PANTHER PTHR33398 2 90 1.1E-32 T 23-04-2016 SD28_RS01655 21b756a7d1c33c6d87961010e38445cc 90 SUPERFAMILY SSF46992 3 86 1.44E-30 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS01655 21b756a7d1c33c6d87961010e38445cc 90 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.012 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS07565 88ba318b8766fc771050e4b5f49e5e72 340 PANTHER PTHR30514:SF0 1 340 2.9E-84 T 23-04-2016 SD28_RS07565 88ba318b8766fc771050e4b5f49e5e72 340 Pfam PF02685 Glucokinase 4 335 8.1E-109 T 23-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 SD28_RS07565 88ba318b8766fc771050e4b5f49e5e72 340 TIGRFAM TIGR00749 glk: glucokinase 4 329 1.2E-81 T 23-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 SD28_RS07565 88ba318b8766fc771050e4b5f49e5e72 340 Gene3D G3DSA:3.40.367.20 104 319 1.9E-64 T 23-04-2016 SD28_RS07565 88ba318b8766fc771050e4b5f49e5e72 340 PANTHER PTHR30514 1 340 2.9E-84 T 23-04-2016 SD28_RS07565 88ba318b8766fc771050e4b5f49e5e72 340 SUPERFAMILY SSF53067 1 338 3.51E-50 T 23-04-2016 SD28_RS05310 042740e846fe25eeb5aa9e3b570174f0 202 Pfam PF04390 Lipopolysaccharide-assembly 8 163 5.7E-13 T 23-04-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 SD28_RS05310 042740e846fe25eeb5aa9e3b570174f0 202 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 1 168 18.955 T 23-04-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 SD28_RS05310 042740e846fe25eeb5aa9e3b570174f0 202 Gene3D G3DSA:3.30.160.150 41 174 1.9E-22 T 23-04-2016 SD28_RS07585 ecab6c7be29effd0890392f5e87eca68 112 Pfam PF01230 HIT domain 12 105 4.0E-25 T 23-04-2016 IPR001310 Histidine triad (HIT) protein SD28_RS07585 ecab6c7be29effd0890392f5e87eca68 112 PANTHER PTHR23089:SF2 4 105 9.7E-39 T 23-04-2016 SD28_RS07585 ecab6c7be29effd0890392f5e87eca68 112 SUPERFAMILY SSF54197 1 105 1.28E-34 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 SD28_RS07585 ecab6c7be29effd0890392f5e87eca68 112 PRINTS PR00332 Histidine triad family signature 26 44 8.4E-17 T 23-04-2016 IPR001310 Histidine triad (HIT) protein SD28_RS07585 ecab6c7be29effd0890392f5e87eca68 112 PRINTS PR00332 Histidine triad family signature 92 102 8.4E-17 T 23-04-2016 IPR001310 Histidine triad (HIT) protein SD28_RS07585 ecab6c7be29effd0890392f5e87eca68 112 PRINTS PR00332 Histidine triad family signature 5 21 8.4E-17 T 23-04-2016 IPR001310 Histidine triad (HIT) protein SD28_RS07585 ecab6c7be29effd0890392f5e87eca68 112 Gene3D G3DSA:3.30.428.10 1 105 7.6E-36 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 SD28_RS07585 ecab6c7be29effd0890392f5e87eca68 112 PANTHER PTHR23089 4 105 9.7E-39 T 23-04-2016 IPR001310 Histidine triad (HIT) protein SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 Gene3D G3DSA:3.40.50.620 179 376 3.0E-86 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 Gene3D G3DSA:3.40.50.620 2 140 3.0E-86 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 SUPERFAMILY SSF50249 575 675 1.64E-30 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 Pfam PF08264 Anticodon-binding domain of tRNA 417 562 3.7E-6 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 Pfam PF09334 tRNA synthetases class I (M) 4 394 2.0E-156 T 23-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 Gene3D G3DSA:2.20.28.20 141 172 4.6E-20 T 23-04-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 Gene3D G3DSA:1.10.730.10 377 533 1.0E-37 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 4 533 1.4E-176 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 SUPERFAMILY SSF57770 138 172 4.71E-13 T 23-04-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 22 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 PANTHER PTHR11946:SF86 1 632 1.1E-220 T 23-04-2016 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 SUPERFAMILY SSF52374 172 381 8.57E-95 T 23-04-2016 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 SUPERFAMILY SSF52374 2 137 8.57E-95 T 23-04-2016 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 SUPERFAMILY SSF47323 388 543 6.35E-41 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 PRINTS PR01041 Methionyl-tRNA synthetase signature 289 304 6.0E-25 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 PRINTS PR01041 Methionyl-tRNA synthetase signature 382 393 6.0E-25 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 PRINTS PR01041 Methionyl-tRNA synthetase signature 86 97 6.0E-25 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 PRINTS PR01041 Methionyl-tRNA synthetase signature 38 52 6.0E-25 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 PRINTS PR01041 Methionyl-tRNA synthetase signature 6 19 6.0E-25 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 PRINTS PR01041 Methionyl-tRNA synthetase signature 249 260 6.0E-25 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 Gene3D G3DSA:2.40.50.140 570 676 4.1E-41 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 541 676 2.6E-45 T 23-04-2016 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 Pfam PF01588 Putative tRNA binding domain 582 673 4.0E-23 T 23-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 Hamap MF_00098 Methionine--tRNA ligase [metG]. 2 544 39.992 T 23-04-2016 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 SD28_RS07540 bfeb345b90de0a7756bc50bceabde31d 676 PANTHER PTHR11946 1 632 1.1E-220 T 23-04-2016 SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 SUPERFAMILY SSF52518 59 472 1.54E-117 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 105 304 1.7E-11 T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 PIRSF PIRSF000156 1 892 0.0 T 23-04-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 891 0.0 T 23-04-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 PANTHER PTHR11624 558 772 0.0 T 23-04-2016 IPR033247 Transketolase family SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 PANTHER PTHR11624 475 540 0.0 T 23-04-2016 IPR033247 Transketolase family SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 PANTHER PTHR11624 791 874 0.0 T 23-04-2016 IPR033247 Transketolase family SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 PANTHER PTHR11624 366 456 0.0 T 23-04-2016 IPR033247 Transketolase family SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 PANTHER PTHR11624 75 296 0.0 T 23-04-2016 IPR033247 Transketolase family SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 SUPERFAMILY SSF52922 706 891 2.47E-54 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 PANTHER PTHR11624:SF67 558 772 0.0 T 23-04-2016 SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 PANTHER PTHR11624:SF67 475 540 0.0 T 23-04-2016 SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 PANTHER PTHR11624:SF67 791 874 0.0 T 23-04-2016 SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 PANTHER PTHR11624:SF67 366 456 0.0 T 23-04-2016 SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 PANTHER PTHR11624:SF67 75 296 0.0 T 23-04-2016 SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 Gene3D G3DSA:3.40.50.970 476 709 1.0E-112 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 Gene3D G3DSA:3.40.50.920 711 891 5.4E-70 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 SUPERFAMILY SSF52518 477 703 7.06E-92 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS03225 9a8e5df2d08e03026c51f337aa5f1e55 892 Gene3D G3DSA:3.40.50.970 59 471 3.9E-128 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS06005 871235aa2ffde2caad0f8858d2a0def0 453 SUPERFAMILY SSF53623 97 300 1.09E-44 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS06005 871235aa2ffde2caad0f8858d2a0def0 453 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 3 449 28.866 T 23-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS06005 871235aa2ffde2caad0f8858d2a0def0 453 Gene3D G3DSA:3.90.190.20 310 449 3.3E-30 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS06005 871235aa2ffde2caad0f8858d2a0def0 453 Gene3D G3DSA:3.40.1190.10 80 300 6.0E-55 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS06005 871235aa2ffde2caad0f8858d2a0def0 453 Pfam PF01225 Mur ligase family, catalytic domain 23 102 3.0E-6 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS06005 871235aa2ffde2caad0f8858d2a0def0 453 PANTHER PTHR23135 10 449 2.1E-110 T 23-04-2016 SD28_RS06005 871235aa2ffde2caad0f8858d2a0def0 453 SUPERFAMILY SSF53244 310 447 4.94E-25 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS06005 871235aa2ffde2caad0f8858d2a0def0 453 PANTHER PTHR23135:SF3 10 449 2.1E-110 T 23-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS06005 871235aa2ffde2caad0f8858d2a0def0 453 Pfam PF08245 Mur ligase middle domain 104 287 2.2E-40 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS06005 871235aa2ffde2caad0f8858d2a0def0 453 Gene3D G3DSA:3.40.1390.10 2 77 1.0E-18 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS06005 871235aa2ffde2caad0f8858d2a0def0 453 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 28 447 6.7E-106 T 23-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS06005 871235aa2ffde2caad0f8858d2a0def0 453 SUPERFAMILY SSF63418 2 94 7.98E-20 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS06005 871235aa2ffde2caad0f8858d2a0def0 453 Pfam PF02875 Mur ligase family, glutamate ligase domain 310 390 4.7E-9 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS01805 6eb1e9eeef69e7ca8eec98bcdc30d78f 215 PANTHER PTHR12215 58 211 7.7E-22 T 23-04-2016 SD28_RS01805 6eb1e9eeef69e7ca8eec98bcdc30d78f 215 PANTHER PTHR12215:SF10 58 211 7.7E-22 T 23-04-2016 SD28_RS01805 6eb1e9eeef69e7ca8eec98bcdc30d78f 215 SUPERFAMILY SSF56214 93 178 5.06E-17 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 SD28_RS01805 6eb1e9eeef69e7ca8eec98bcdc30d78f 215 Gene3D G3DSA:3.90.470.20 106 174 4.8E-16 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 SD28_RS01805 6eb1e9eeef69e7ca8eec98bcdc30d78f 215 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 94 165 3.7E-11 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 SD28_RS01805 6eb1e9eeef69e7ca8eec98bcdc30d78f 215 SUPERFAMILY SSF56214 40 86 5.23E-7 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 SD28_RS01805 6eb1e9eeef69e7ca8eec98bcdc30d78f 215 Gene3D G3DSA:3.90.470.20 37 105 1.3E-15 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 SD28_RS04485 39ac5029380a6d2e836adac9cf18cba9 64 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 22.518 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS04485 39ac5029380a6d2e836adac9cf18cba9 64 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 43 5.0E-9 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS04485 39ac5029380a6d2e836adac9cf18cba9 64 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 23-04-2016 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS04485 39ac5029380a6d2e836adac9cf18cba9 64 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.4E-13 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS04485 39ac5029380a6d2e836adac9cf18cba9 64 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.4E-13 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS04485 39ac5029380a6d2e836adac9cf18cba9 64 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.4E-13 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS04485 39ac5029380a6d2e836adac9cf18cba9 64 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.4E-13 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS04485 39ac5029380a6d2e836adac9cf18cba9 64 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 58 3.6E-23 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS04485 39ac5029380a6d2e836adac9cf18cba9 64 PANTHER PTHR21109 1 58 7.8E-21 T 23-04-2016 SD28_RS04485 39ac5029380a6d2e836adac9cf18cba9 64 Pfam PF01165 Ribosomal protein S21 4 57 6.3E-21 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 SD28_RS07525 36b455e5fc4a0601bdba2e58c5c3a579 220 PANTHER PTHR31299 2 208 7.1E-83 T 23-04-2016 SD28_RS07525 36b455e5fc4a0601bdba2e58c5c3a579 220 Pfam PF00156 Phosphoribosyl transferase domain 8 195 4.5E-26 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 SD28_RS07525 36b455e5fc4a0601bdba2e58c5c3a579 220 SUPERFAMILY SSF53271 3 209 7.74E-50 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS07525 36b455e5fc4a0601bdba2e58c5c3a579 220 Gene3D G3DSA:3.40.50.2020 4 63 3.5E-38 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS07525 36b455e5fc4a0601bdba2e58c5c3a579 220 Gene3D G3DSA:3.40.50.2020 95 204 3.5E-38 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS02015 04ea12cef0b88f33f33f6033a65c4088 106 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 7 106 18.524 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 SD28_RS02015 04ea12cef0b88f33f33f6033a65c4088 106 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 14 101 4.8E-20 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 SD28_RS02015 04ea12cef0b88f33f33f6033a65c4088 106 PANTHER PTHR11434 8 106 1.4E-36 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 SD28_RS06455 986297d65a15f6958b8506b68724d7a6 256 Pfam PF00557 Metallopeptidase family M24 14 242 2.2E-53 T 23-04-2016 IPR000994 Peptidase M24, structural domain SD28_RS06455 986297d65a15f6958b8506b68724d7a6 256 PRINTS PR00599 Methionine aminopeptidase-1 signature 162 174 1.7E-21 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase SD28_RS06455 986297d65a15f6958b8506b68724d7a6 256 PRINTS PR00599 Methionine aminopeptidase-1 signature 92 108 1.7E-21 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase SD28_RS06455 986297d65a15f6958b8506b68724d7a6 256 PRINTS PR00599 Methionine aminopeptidase-1 signature 193 205 1.7E-21 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase SD28_RS06455 986297d65a15f6958b8506b68724d7a6 256 PRINTS PR00599 Methionine aminopeptidase-1 signature 70 83 1.7E-21 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase SD28_RS06455 986297d65a15f6958b8506b68724d7a6 256 PANTHER PTHR10804:SF75 4 256 6.7E-153 T 23-04-2016 SD28_RS06455 986297d65a15f6958b8506b68724d7a6 256 SUPERFAMILY SSF55920 5 252 1.57E-93 T 23-04-2016 IPR000994 Peptidase M24, structural domain SD28_RS06455 986297d65a15f6958b8506b68724d7a6 256 Hamap MF_01974 Methionine aminopeptidase [map]. 4 251 43.184 T 23-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 SD28_RS06455 986297d65a15f6958b8506b68724d7a6 256 PANTHER PTHR10804 4 256 6.7E-153 T 23-04-2016 SD28_RS06455 986297d65a15f6958b8506b68724d7a6 256 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 4 250 1.1E-101 T 23-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 SD28_RS06455 986297d65a15f6958b8506b68724d7a6 256 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 168 186 - T 23-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 SD28_RS06455 986297d65a15f6958b8506b68724d7a6 256 Gene3D G3DSA:3.90.230.10 4 254 3.6E-104 T 23-04-2016 IPR000994 Peptidase M24, structural domain SD28_RS05600 2927a89618b59e0b45bd6d16b3aaf88e 326 PANTHER PTHR30473 4 322 1.7E-152 T 23-04-2016 SD28_RS05600 2927a89618b59e0b45bd6d16b3aaf88e 326 Pfam PF02562 PhoH-like protein 114 317 2.0E-90 T 23-04-2016 IPR003714 PhoH-like protein GO:0005524 SD28_RS05600 2927a89618b59e0b45bd6d16b3aaf88e 326 Gene3D G3DSA:3.40.50.300 113 317 2.8E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05600 2927a89618b59e0b45bd6d16b3aaf88e 326 SUPERFAMILY SSF52540 113 289 4.11E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05600 2927a89618b59e0b45bd6d16b3aaf88e 326 PANTHER PTHR30473:SF1 4 322 1.7E-152 T 23-04-2016 SD28_RS07000 75ff6f6eb6901b9a026e6986564fdd83 600 SUPERFAMILY SSF118116 409 598 7.72E-52 T 23-04-2016 SD28_RS07000 75ff6f6eb6901b9a026e6986564fdd83 600 SMART SM01340 212 330 2.1E-46 T 23-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 SD28_RS07000 75ff6f6eb6901b9a026e6986564fdd83 600 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 214 329 3.1E-34 T 23-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 SD28_RS07000 75ff6f6eb6901b9a026e6986564fdd83 600 Pfam PF08676 MutL C terminal dimerisation domain 409 555 2.8E-40 T 23-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 SD28_RS07000 75ff6f6eb6901b9a026e6986564fdd83 600 Gene3D G3DSA:3.30.565.10 6 213 4.8E-66 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS07000 75ff6f6eb6901b9a026e6986564fdd83 600 PANTHER PTHR10073 7 587 4.7E-126 T 23-04-2016 SD28_RS07000 75ff6f6eb6901b9a026e6986564fdd83 600 SUPERFAMILY SSF54211 191 329 1.97E-32 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS07000 75ff6f6eb6901b9a026e6986564fdd83 600 SUPERFAMILY SSF55874 6 206 5.76E-49 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS07000 75ff6f6eb6901b9a026e6986564fdd83 600 Gene3D G3DSA:3.30.230.10 218 328 3.9E-32 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SD28_RS07000 75ff6f6eb6901b9a026e6986564fdd83 600 SMART SM00853 412 556 1.6E-42 T 23-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 SD28_RS07000 75ff6f6eb6901b9a026e6986564fdd83 600 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 128 7.5E-13 T 23-04-2016 SD28_RS07000 75ff6f6eb6901b9a026e6986564fdd83 600 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 5 596 25.486 T 23-04-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 SD28_RS07000 75ff6f6eb6901b9a026e6986564fdd83 600 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 6 310 3.1E-87 T 23-04-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 SD28_RS07000 75ff6f6eb6901b9a026e6986564fdd83 600 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 97 103 - T 23-04-2016 IPR014762 DNA mismatch repair, conserved site SD28_RS02185 0d913074faea81e52db65b0b11f93e4b 196 PANTHER PTHR30546:SF0 1 194 8.2E-57 T 23-04-2016 SD28_RS02185 0d913074faea81e52db65b0b11f93e4b 196 Pfam PF03358 NADPH-dependent FMN reductase 10 138 1.6E-13 T 23-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 SD28_RS02185 0d913074faea81e52db65b0b11f93e4b 196 Gene3D G3DSA:3.40.50.360 1 194 1.3E-64 T 23-04-2016 IPR029039 Flavoprotein-like domain SD28_RS02185 0d913074faea81e52db65b0b11f93e4b 196 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 23-04-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 SD28_RS02185 0d913074faea81e52db65b0b11f93e4b 196 PANTHER PTHR30546 1 194 8.2E-57 T 23-04-2016 SD28_RS02185 0d913074faea81e52db65b0b11f93e4b 196 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 4 194 3.1E-42 T 23-04-2016 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 SD28_RS02185 0d913074faea81e52db65b0b11f93e4b 196 SUPERFAMILY SSF52218 1 194 1.57E-57 T 23-04-2016 IPR029039 Flavoprotein-like domain SD28_RS06770 5439f66f85bc100771338914a2de121a 388 SUPERFAMILY SSF51735 1 194 2.39E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06770 5439f66f85bc100771338914a2de121a 388 Gene3D G3DSA:1.10.1040.10 198 284 5.2E-32 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 SD28_RS06770 5439f66f85bc100771338914a2de121a 388 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 192 281 2.0E-25 T 23-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 SD28_RS06770 5439f66f85bc100771338914a2de121a 388 Gene3D G3DSA:3.40.50.720 1 197 3.3E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06770 5439f66f85bc100771338914a2de121a 388 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 167 5.3E-30 T 23-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 SD28_RS06770 5439f66f85bc100771338914a2de121a 388 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 377 1.4E-94 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 SD28_RS06770 5439f66f85bc100771338914a2de121a 388 PANTHER PTHR11374:SF17 1 384 3.3E-181 T 23-04-2016 SD28_RS06770 5439f66f85bc100771338914a2de121a 388 SUPERFAMILY SSF52413 285 386 3.53E-23 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 SD28_RS06770 5439f66f85bc100771338914a2de121a 388 PIRSF PIRSF500134 1 343 2.9E-108 T 23-04-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 SD28_RS06770 5439f66f85bc100771338914a2de121a 388 PIRSF PIRSF000124 1 388 4.0E-129 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 SD28_RS06770 5439f66f85bc100771338914a2de121a 388 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 301 376 6.7E-9 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 SD28_RS06770 5439f66f85bc100771338914a2de121a 388 SUPERFAMILY SSF48179 191 286 2.04E-29 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 SD28_RS06770 5439f66f85bc100771338914a2de121a 388 PANTHER PTHR11374 1 384 3.3E-181 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 SD28_RS06770 5439f66f85bc100771338914a2de121a 388 SMART SM00984 300 387 1.6E-8 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 SD28_RS06770 5439f66f85bc100771338914a2de121a 388 Gene3D G3DSA:3.40.50.720 285 387 2.3E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS04120 0d14c1c103ce81c53c229332e9303836 324 PANTHER PTHR11079 21 321 2.3E-116 T 23-04-2016 SD28_RS04120 0d14c1c103ce81c53c229332e9303836 324 SUPERFAMILY SSF55120 80 311 2.88E-74 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS04120 0d14c1c103ce81c53c229332e9303836 324 PANTHER PTHR11079:SF73 21 321 2.3E-116 T 23-04-2016 SD28_RS04120 0d14c1c103ce81c53c229332e9303836 324 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 139 153 - T 23-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS04120 0d14c1c103ce81c53c229332e9303836 324 Gene3D G3DSA:3.10.290.10 24 72 5.8E-7 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 SD28_RS04120 0d14c1c103ce81c53c229332e9303836 324 SUPERFAMILY SSF55174 21 108 1.24E-7 T 23-04-2016 SD28_RS04120 0d14c1c103ce81c53c229332e9303836 324 SMART SM00363 23 87 1.6E-4 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 SD28_RS04120 0d14c1c103ce81c53c229332e9303836 324 Pfam PF00849 RNA pseudouridylate synthase 97 245 6.8E-33 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS04120 0d14c1c103ce81c53c229332e9303836 324 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 20 310 1.9E-93 T 23-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS04120 0d14c1c103ce81c53c229332e9303836 324 Pfam PF01479 S4 domain 24 63 4.3E-5 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 SD28_RS01410 dbc261599da1b98864121ae8557c6db6 438 Pfam PF09821 C-terminal AAA-associated domain 302 419 2.9E-40 T 23-04-2016 IPR018632 C-terminal AAA-associated domain SD28_RS01410 dbc261599da1b98864121ae8557c6db6 438 PANTHER PTHR24220:SF589 7 246 4.1E-130 T 23-04-2016 SD28_RS01410 dbc261599da1b98864121ae8557c6db6 438 PANTHER PTHR24220:SF589 263 290 4.1E-130 T 23-04-2016 SD28_RS01410 dbc261599da1b98864121ae8557c6db6 438 PANTHER PTHR24220:SF589 311 420 4.1E-130 T 23-04-2016 SD28_RS01410 dbc261599da1b98864121ae8557c6db6 438 PANTHER PTHR24220 7 246 4.1E-130 T 23-04-2016 SD28_RS01410 dbc261599da1b98864121ae8557c6db6 438 PANTHER PTHR24220 263 290 4.1E-130 T 23-04-2016 SD28_RS01410 dbc261599da1b98864121ae8557c6db6 438 PANTHER PTHR24220 311 420 4.1E-130 T 23-04-2016 SD28_RS01410 dbc261599da1b98864121ae8557c6db6 438 SMART SM00382 35 218 7.7E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS01410 dbc261599da1b98864121ae8557c6db6 438 Gene3D G3DSA:3.40.50.300 2 213 1.0E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01410 dbc261599da1b98864121ae8557c6db6 438 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS01410 dbc261599da1b98864121ae8557c6db6 438 Pfam PF00005 ABC transporter 26 165 6.3E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS01410 dbc261599da1b98864121ae8557c6db6 438 SUPERFAMILY SSF52540 7 243 4.12E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01960 3115e910c730783bda66da6bba60ecff 423 SUPERFAMILY SSF57850 100 151 1.41E-8 T 23-04-2016 SD28_RS01960 3115e910c730783bda66da6bba60ecff 423 Pfam PF00071 Ras family 356 396 1.1E-5 T 23-04-2016 IPR001806 Small GTPase superfamily GO:0005525|GO:0007264 SD28_RS01960 3115e910c730783bda66da6bba60ecff 423 Pfam PF13639 Ring finger domain 17 64 9.5E-10 T 23-04-2016 IPR001841 Zinc finger, RING-type GO:0005515|GO:0008270 SD28_RS01960 3115e910c730783bda66da6bba60ecff 423 Pfam PF13639 Ring finger domain 99 142 1.1E-7 T 23-04-2016 IPR001841 Zinc finger, RING-type GO:0005515|GO:0008270 SD28_RS01960 3115e910c730783bda66da6bba60ecff 423 SMART SM00184 18 63 2.0E-6 T 23-04-2016 IPR001841 Zinc finger, RING-type GO:0005515|GO:0008270 SD28_RS01960 3115e910c730783bda66da6bba60ecff 423 SMART SM00184 101 141 0.41 T 23-04-2016 IPR001841 Zinc finger, RING-type GO:0005515|GO:0008270 SD28_RS01960 3115e910c730783bda66da6bba60ecff 423 SUPERFAMILY SSF57850 17 73 2.16E-14 T 23-04-2016 SD28_RS01960 3115e910c730783bda66da6bba60ecff 423 Gene3D G3DSA:3.30.40.10 97 147 6.0E-10 T 23-04-2016 IPR013083 Zinc finger, RING/FYVE/PHD-type SD28_RS01960 3115e910c730783bda66da6bba60ecff 423 Gene3D G3DSA:3.40.50.300 319 398 7.0E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01960 3115e910c730783bda66da6bba60ecff 423 SUPERFAMILY SSF52540 335 405 4.59E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01960 3115e910c730783bda66da6bba60ecff 423 Gene3D G3DSA:3.30.40.10 15 68 8.7E-14 T 23-04-2016 IPR013083 Zinc finger, RING/FYVE/PHD-type SD28_RS02585 a8bbf4c657059985ab2b177ee2d3749c 146 SUPERFAMILY SSF46906 69 142 3.53E-26 T 23-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 SD28_RS02585 a8bbf4c657059985ab2b177ee2d3749c 146 Pfam PF00298 Ribosomal protein L11, RNA binding domain 73 141 1.9E-24 T 23-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 SD28_RS02585 a8bbf4c657059985ab2b177ee2d3749c 146 SMART SM00649 10 142 3.8E-86 T 23-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 SD28_RS02585 a8bbf4c657059985ab2b177ee2d3749c 146 Gene3D G3DSA:1.10.10.250 74 142 1.3E-30 T 23-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 SD28_RS02585 a8bbf4c657059985ab2b177ee2d3749c 146 PANTHER PTHR11661 4 142 2.1E-70 T 23-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 SD28_RS02585 a8bbf4c657059985ab2b177ee2d3749c 146 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 37 75 1.0E-16 T 23-04-2016 SD28_RS02585 a8bbf4c657059985ab2b177ee2d3749c 146 Gene3D G3DSA:3.30.1550.10 3 73 5.1E-39 T 23-04-2016 IPR020784 Ribosomal protein L11, N-terminal SD28_RS02585 a8bbf4c657059985ab2b177ee2d3749c 146 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 6 143 31.974 T 23-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 SD28_RS02585 a8bbf4c657059985ab2b177ee2d3749c 146 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 4 142 2.5E-65 T 23-04-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 SD28_RS02585 a8bbf4c657059985ab2b177ee2d3749c 146 SUPERFAMILY SSF54747 4 74 6.15E-31 T 23-04-2016 IPR020784 Ribosomal protein L11, N-terminal SD28_RS02585 a8bbf4c657059985ab2b177ee2d3749c 146 ProSitePatterns PS00359 Ribosomal protein L11 signature. 128 143 - T 23-04-2016 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 SD28_RS02585 a8bbf4c657059985ab2b177ee2d3749c 146 Pfam PF03946 Ribosomal protein L11, N-terminal domain 10 68 1.6E-30 T 23-04-2016 IPR020784 Ribosomal protein L11, N-terminal SD28_RS02275 15f528228367a851584e89974478c882 264 Pfam PF01148 Cytidylyltransferase family 2 258 5.1E-58 T 23-04-2016 SD28_RS02275 15f528228367a851584e89974478c882 264 PANTHER PTHR13773 1 252 2.7E-53 T 23-04-2016 SD28_RS02275 15f528228367a851584e89974478c882 264 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 217 243 - T 23-04-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00557 SD28_RS02345 7a80d0b2270532e3a3001cda4a1f84c5 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 23-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02345 7a80d0b2270532e3a3001cda4a1f84c5 137 Gene3D G3DSA:3.90.1170.10 23 135 1.1E-54 T 23-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 SD28_RS02345 7a80d0b2270532e3a3001cda4a1f84c5 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 2.4E-40 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 SD28_RS02345 7a80d0b2270532e3a3001cda4a1f84c5 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 2.4E-40 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 SD28_RS02345 7a80d0b2270532e3a3001cda4a1f84c5 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 2.4E-40 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 SD28_RS02345 7a80d0b2270532e3a3001cda4a1f84c5 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 2.4E-40 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 SD28_RS02345 7a80d0b2270532e3a3001cda4a1f84c5 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 3.8E-50 T 23-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 SD28_RS02345 7a80d0b2270532e3a3001cda4a1f84c5 137 PANTHER PTHR12220 1 137 1.1E-74 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 SD28_RS02345 7a80d0b2270532e3a3001cda4a1f84c5 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 23-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02345 7a80d0b2270532e3a3001cda4a1f84c5 137 SUPERFAMILY SSF54686 1 134 1.22E-55 T 23-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 SD28_RS02345 7a80d0b2270532e3a3001cda4a1f84c5 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 38.426 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 SD28_RS02345 7a80d0b2270532e3a3001cda4a1f84c5 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 2.3E-60 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 SD28_RS00075 971b9897c5ff31640421add759b0d9a0 352 PANTHER PTHR21085 2 350 6.5E-202 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS00075 971b9897c5ff31640421add759b0d9a0 352 Pfam PF01264 Chorismate synthase 10 345 8.4E-142 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS00075 971b9897c5ff31640421add759b0d9a0 352 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 36.675 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS00075 971b9897c5ff31640421add759b0d9a0 352 PIRSF PIRSF001456 3 352 2.2E-141 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS00075 971b9897c5ff31640421add759b0d9a0 352 SUPERFAMILY SSF103263 4 349 1.57E-143 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS00075 971b9897c5ff31640421add759b0d9a0 352 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 23-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS00075 971b9897c5ff31640421add759b0d9a0 352 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 23-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS00075 971b9897c5ff31640421add759b0d9a0 352 TIGRFAM TIGR00033 aroC: chorismate synthase 10 347 1.8E-140 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS00075 971b9897c5ff31640421add759b0d9a0 352 Gene3D G3DSA:3.60.150.10 9 348 8.6E-154 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS00075 971b9897c5ff31640421add759b0d9a0 352 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 23-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS07750 994fff18aed114cf0ee987f2baef4d87 658 PRINTS PR01415 Ankyrin repeat signature 418 433 9.8E-5 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS07750 994fff18aed114cf0ee987f2baef4d87 658 PRINTS PR01415 Ankyrin repeat signature 499 513 9.8E-5 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS07750 994fff18aed114cf0ee987f2baef4d87 658 Pfam PF12796 Ankyrin repeats (3 copies) 389 479 2.3E-19 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS07750 994fff18aed114cf0ee987f2baef4d87 658 Gene3D G3DSA:1.25.40.20 384 464 1.0E-29 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS07750 994fff18aed114cf0ee987f2baef4d87 658 Gene3D G3DSA:1.25.40.20 465 539 5.2E-28 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS07750 994fff18aed114cf0ee987f2baef4d87 658 SUPERFAMILY SSF48403 380 539 1.23E-46 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS07750 994fff18aed114cf0ee987f2baef4d87 658 PANTHER PTHR24123 389 539 1.1E-51 T 23-04-2016 SD28_RS07750 994fff18aed114cf0ee987f2baef4d87 658 Pfam PF13637 Ankyrin repeats (many copies) 485 537 1.2E-7 T 23-04-2016 SD28_RS07750 994fff18aed114cf0ee987f2baef4d87 658 SMART SM00248 450 479 3.5E-5 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS07750 994fff18aed114cf0ee987f2baef4d87 658 SMART SM00248 516 547 0.0024 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS07750 994fff18aed114cf0ee987f2baef4d87 658 SMART SM00248 417 446 5.1E-7 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS07750 994fff18aed114cf0ee987f2baef4d87 658 SMART SM00248 384 413 0.006 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS07750 994fff18aed114cf0ee987f2baef4d87 658 SMART SM00248 483 512 3.5E-6 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS05295 800692589d9d0ea62f527c494095a41d 286 PANTHER PTHR23264:SF19 5 271 5.1E-136 T 23-04-2016 SD28_RS05295 800692589d9d0ea62f527c494095a41d 286 SUPERFAMILY SSF52540 15 245 6.13E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05295 800692589d9d0ea62f527c494095a41d 286 PANTHER PTHR23264 5 271 5.1E-136 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein SD28_RS05295 800692589d9d0ea62f527c494095a41d 286 Gene3D G3DSA:3.40.50.300 12 263 4.3E-102 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05295 800692589d9d0ea62f527c494095a41d 286 Hamap MF_02040 Iron-sulfur cluster carrier protein. 17 265 35.981 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein SD28_RS05295 800692589d9d0ea62f527c494095a41d 286 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 21 264 1.0E-98 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein SD28_RS04895 3cdeee5d12807ef28ac0001c65327ec6 187 Pfam PF01797 Transposase IS200 like 115 170 4.4E-5 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 SD28_RS04895 3cdeee5d12807ef28ac0001c65327ec6 187 Gene3D G3DSA:3.30.70.1290 14 173 1.6E-14 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 SD28_RS04895 3cdeee5d12807ef28ac0001c65327ec6 187 SUPERFAMILY SSF143422 117 175 3.79E-25 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 SD28_RS04895 3cdeee5d12807ef28ac0001c65327ec6 187 SUPERFAMILY SSF143422 16 89 3.79E-25 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 SD28_RS04895 3cdeee5d12807ef28ac0001c65327ec6 187 SMART SM01321 18 170 1.2E-15 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 SD28_RS06435 77608f0fa3cf9db0b9824b0ecc5427b1 395 Gene3D G3DSA:3.90.1150.10 259 394 5.5E-48 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS06435 77608f0fa3cf9db0b9824b0ecc5427b1 395 PANTHER PTHR11808 5 395 9.1E-186 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 SD28_RS06435 77608f0fa3cf9db0b9824b0ecc5427b1 395 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 200 214 - T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 SD28_RS06435 77608f0fa3cf9db0b9824b0ecc5427b1 395 Gene3D G3DSA:3.40.640.10 7 257 2.5E-95 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS06435 77608f0fa3cf9db0b9824b0ecc5427b1 395 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 9 392 7.1E-144 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 SD28_RS06435 77608f0fa3cf9db0b9824b0ecc5427b1 395 SUPERFAMILY SSF53383 27 393 1.61E-120 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS06435 77608f0fa3cf9db0b9824b0ecc5427b1 395 PIRSF PIRSF001434 1 395 5.8E-145 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 Gene3D G3DSA:3.40.120.10 173 250 7.3E-34 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 Gene3D G3DSA:3.40.120.10 252 368 1.5E-41 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 158 254 6.0E-28 T 23-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 SUPERFAMILY SSF53738 260 365 3.69E-31 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 Gene3D G3DSA:3.30.310.50 371 457 5.2E-28 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 PANTHER PTHR22573:SF28 12 458 1.2E-172 T 23-04-2016 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 SUPERFAMILY SSF55957 368 458 9.03E-23 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 260 368 2.3E-23 T 23-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 PANTHER PTHR22573 12 458 1.2E-172 T 23-04-2016 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 Gene3D G3DSA:3.40.120.10 9 144 1.2E-33 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 171 190 9.0E-26 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 100 114 9.0E-26 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 9.0E-26 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 205 218 9.0E-26 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 374 452 2.3E-11 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 14 140 7.8E-34 T 23-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 SUPERFAMILY SSF53738 156 256 1.96E-31 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 SUPERFAMILY SSF53738 8 133 5.49E-37 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS03220 d4611ad7afdc7b57102136a5d8518a83 460 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 101 110 - T 23-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS07190 7a88b94decec91d8c984914baf45fa06 592 PANTHER PTHR33908:SF3 9 381 3.0E-58 T 23-04-2016 SD28_RS07190 7a88b94decec91d8c984914baf45fa06 592 PANTHER PTHR33908 9 381 3.0E-58 T 23-04-2016 SD28_RS07190 7a88b94decec91d8c984914baf45fa06 592 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 61 219 4.8E-19 T 23-04-2016 SD28_RS01305 2bb328a79e4b9e77d63f0cbee85aaa75 335 Gene3D G3DSA:3.40.1030.10 76 152 2.3E-76 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 SD28_RS01305 2bb328a79e4b9e77d63f0cbee85aaa75 335 Gene3D G3DSA:3.40.1030.10 187 333 2.3E-76 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 SD28_RS01305 2bb328a79e4b9e77d63f0cbee85aaa75 335 PANTHER PTHR11922 1 334 4.1E-86 T 23-04-2016 SD28_RS01305 2bb328a79e4b9e77d63f0cbee85aaa75 335 PANTHER PTHR11922:SF5 1 334 4.1E-86 T 23-04-2016 SD28_RS01305 2bb328a79e4b9e77d63f0cbee85aaa75 335 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 6 334 35.201 T 23-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 SD28_RS01305 2bb328a79e4b9e77d63f0cbee85aaa75 335 SUPERFAMILY SSF47648 7 70 3.92E-12 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain SD28_RS01305 2bb328a79e4b9e77d63f0cbee85aaa75 335 Gene3D G3DSA:1.20.970.10 153 186 1.1E-28 T 23-04-2016 SD28_RS01305 2bb328a79e4b9e77d63f0cbee85aaa75 335 Gene3D G3DSA:1.20.970.10 4 66 1.1E-28 T 23-04-2016 SD28_RS01305 2bb328a79e4b9e77d63f0cbee85aaa75 335 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 9 332 3.0E-115 T 23-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 SD28_RS01305 2bb328a79e4b9e77d63f0cbee85aaa75 335 SUPERFAMILY SSF52418 74 331 2.09E-81 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 SD28_RS01305 2bb328a79e4b9e77d63f0cbee85aaa75 335 Pfam PF02885 Glycosyl transferase family, helical bundle domain 9 66 1.7E-10 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain SD28_RS01305 2bb328a79e4b9e77d63f0cbee85aaa75 335 Pfam PF00591 Glycosyl transferase family, a/b domain 75 324 2.1E-90 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 SD28_RS07405 e4733f08c89116915d5708b9df974434 449 SMART SM00839 205 447 3.7E-80 T 23-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 SD28_RS07405 e4733f08c89116915d5708b9df974434 449 PIRSF PIRSF000185 22 449 6.6E-124 T 23-04-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 SD28_RS07405 e4733f08c89116915d5708b9df974434 449 SUPERFAMILY SSF51735 203 448 1.31E-72 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS07405 e4733f08c89116915d5708b9df974434 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 194 216 2.1E-29 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 SD28_RS07405 e4733f08c89116915d5708b9df974434 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 236 256 2.1E-29 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 SD28_RS07405 e4733f08c89116915d5708b9df974434 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 373 384 2.1E-29 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 SD28_RS07405 e4733f08c89116915d5708b9df974434 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 2.1E-29 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 SD28_RS07405 e4733f08c89116915d5708b9df974434 449 PANTHER PTHR11606:SF4 1 447 6.8E-227 T 23-04-2016 SD28_RS07405 e4733f08c89116915d5708b9df974434 449 SUPERFAMILY SSF53223 6 197 1.12E-71 T 23-04-2016 SD28_RS07405 e4733f08c89116915d5708b9df974434 449 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 SD28_RS07405 e4733f08c89116915d5708b9df974434 449 Gene3D G3DSA:3.40.50.720 210 373 1.4E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS07405 e4733f08c89116915d5708b9df974434 449 PANTHER PTHR11606 1 447 6.8E-227 T 23-04-2016 SD28_RS07405 e4733f08c89116915d5708b9df974434 449 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 203 447 6.8E-83 T 23-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 SD28_RS07405 e4733f08c89116915d5708b9df974434 449 Gene3D G3DSA:1.10.285.10 5 67 2.4E-25 T 23-04-2016 SD28_RS07405 e4733f08c89116915d5708b9df974434 449 Gene3D G3DSA:1.10.285.10 374 447 3.4E-25 T 23-04-2016 SD28_RS07405 e4733f08c89116915d5708b9df974434 449 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 185 1.1E-48 T 23-04-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 SD28_RS07405 e4733f08c89116915d5708b9df974434 449 Gene3D G3DSA:3.40.192.10 68 188 5.5E-60 T 23-04-2016 SD28_RS05890 e7dfb076102c281d2ae8859213286c1d 548 Gene3D G3DSA:1.20.1560.10 7 325 1.6E-29 T 23-04-2016 SD28_RS05890 e7dfb076102c281d2ae8859213286c1d 548 Pfam PF00005 ABC transporter 358 505 1.2E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS05890 e7dfb076102c281d2ae8859213286c1d 548 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 8 535 2.4E-134 T 23-04-2016 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0006810|GO:0016021|GO:0042626 SD28_RS05890 e7dfb076102c281d2ae8859213286c1d 548 SUPERFAMILY SSF90123 7 326 5.49E-39 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 SD28_RS05890 e7dfb076102c281d2ae8859213286c1d 548 Gene3D G3DSA:3.40.50.300 341 546 5.9E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05890 e7dfb076102c281d2ae8859213286c1d 548 ProSitePatterns PS00211 ABC transporters family signature. 478 492 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS05890 e7dfb076102c281d2ae8859213286c1d 548 Pfam PF00664 ABC transporter transmembrane region 116 291 1.1E-8 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 SD28_RS05890 e7dfb076102c281d2ae8859213286c1d 548 PANTHER PTHR24222:SF30 1 546 1.1E-169 T 23-04-2016 SD28_RS05890 e7dfb076102c281d2ae8859213286c1d 548 SMART SM00382 366 548 2.5E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS05890 e7dfb076102c281d2ae8859213286c1d 548 PANTHER PTHR24222 1 546 1.1E-169 T 23-04-2016 SD28_RS05890 e7dfb076102c281d2ae8859213286c1d 548 SUPERFAMILY SSF52540 336 547 5.22E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02080 4556cda8dab85c9ee555f8d88b71bf22 335 SMART SM00327 91 293 3.1E-27 T 23-04-2016 IPR002035 von Willebrand factor, type A SD28_RS02080 4556cda8dab85c9ee555f8d88b71bf22 335 Gene3D G3DSA:3.40.50.410 88 290 1.9E-30 T 23-04-2016 IPR002035 von Willebrand factor, type A SD28_RS02080 4556cda8dab85c9ee555f8d88b71bf22 335 Pfam PF00092 von Willebrand factor type A domain 93 286 2.4E-29 T 23-04-2016 IPR002035 von Willebrand factor, type A SD28_RS02080 4556cda8dab85c9ee555f8d88b71bf22 335 SUPERFAMILY SSF53300 88 290 3.89E-40 T 23-04-2016 IPR002035 von Willebrand factor, type A SD28_RS02080 4556cda8dab85c9ee555f8d88b71bf22 335 PANTHER PTHR22550 1 334 3.3E-109 T 23-04-2016 SD28_RS02080 4556cda8dab85c9ee555f8d88b71bf22 335 PANTHER PTHR22550:SF12 1 334 3.3E-109 T 23-04-2016 SD28_RS00585 fb7534e756de6e4117a9fbca15e021c9 274 PIRSF PIRSF003092 2 274 1.4E-86 T 23-04-2016 IPR025501 ATP binding protein MinD SD28_RS00585 fb7534e756de6e4117a9fbca15e021c9 274 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 11 221 1.8E-32 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain SD28_RS00585 fb7534e756de6e4117a9fbca15e021c9 274 SUPERFAMILY SSF52540 7 270 2.21E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00585 fb7534e756de6e4117a9fbca15e021c9 274 Gene3D G3DSA:3.40.50.300 5 252 1.4E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00585 fb7534e756de6e4117a9fbca15e021c9 274 PANTHER PTHR13696 6 262 1.4E-80 T 23-04-2016 SD28_RS00585 fb7534e756de6e4117a9fbca15e021c9 274 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 8 270 5.5E-97 T 23-04-2016 IPR010223 ATP binding protein MinD, bacterial-type GO:0000918|GO:0016887 SD28_RS00585 fb7534e756de6e4117a9fbca15e021c9 274 PANTHER PTHR13696:SF1 6 262 1.4E-80 T 23-04-2016 SD28_RS07580 9e75a1279503014cbad429c273dbd6a5 550 PANTHER PTHR10566 41 439 6.5E-209 T 23-04-2016 SD28_RS07580 9e75a1279503014cbad429c273dbd6a5 550 Gene3D G3DSA:3.90.1200.10 247 316 1.2E-4 T 23-04-2016 SD28_RS07580 9e75a1279503014cbad429c273dbd6a5 550 SUPERFAMILY SSF56112 94 157 5.4E-43 T 23-04-2016 IPR011009 Protein kinase-like domain SD28_RS07580 9e75a1279503014cbad429c273dbd6a5 550 SUPERFAMILY SSF56112 192 435 5.4E-43 T 23-04-2016 IPR011009 Protein kinase-like domain SD28_RS07580 9e75a1279503014cbad429c273dbd6a5 550 Pfam PF03109 ABC1 family 113 229 1.1E-32 T 23-04-2016 IPR004147 UbiB domain SD28_RS07580 9e75a1279503014cbad429c273dbd6a5 550 PANTHER PTHR10566:SF79 41 439 6.5E-209 T 23-04-2016 SD28_RS07580 9e75a1279503014cbad429c273dbd6a5 550 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 5 441 2.2E-163 T 23-04-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 SD28_RS02065 b5477cd47cdbeecaf1cd44cfade0a134 318 Gene3D G3DSA:1.10.8.300 200 314 3.7E-40 T 23-04-2016 SD28_RS02065 b5477cd47cdbeecaf1cd44cfade0a134 318 Gene3D G3DSA:3.40.50.300 18 183 2.5E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02065 b5477cd47cdbeecaf1cd44cfade0a134 318 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 37 167 3.4E-63 T 23-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 SD28_RS02065 b5477cd47cdbeecaf1cd44cfade0a134 318 PANTHER PTHR11603 2 318 6.5E-138 T 23-04-2016 SD28_RS02065 b5477cd47cdbeecaf1cd44cfade0a134 318 SUPERFAMILY SSF52540 5 291 2.06E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02065 b5477cd47cdbeecaf1cd44cfade0a134 318 PIRSF PIRSF002849 2 318 4.8E-123 T 23-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted SD28_RS02065 b5477cd47cdbeecaf1cd44cfade0a134 318 PANTHER PTHR11603:SF148 2 318 6.5E-138 T 23-04-2016 SD28_RS06420 b92d5f03dede69d8ac9354981547f804 1157 SUPERFAMILY SSF89550 1 196 2.94E-12 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 SD28_RS06420 b92d5f03dede69d8ac9354981547f804 1157 PANTHER PTHR32294:SF0 4 1157 0.0 T 23-04-2016 SD28_RS06420 b92d5f03dede69d8ac9354981547f804 1157 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 288 724 2.1E-173 T 23-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS06420 b92d5f03dede69d8ac9354981547f804 1157 SMART SM00481 3 70 2.9E-16 T 23-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 SD28_RS06420 b92d5f03dede69d8ac9354981547f804 1157 PANTHER PTHR32294 4 1157 0.0 T 23-04-2016 SD28_RS06420 b92d5f03dede69d8ac9354981547f804 1157 Pfam PF14579 Helix-hairpin-helix motif 801 889 4.2E-22 T 23-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS06420 b92d5f03dede69d8ac9354981547f804 1157 Gene3D G3DSA:1.10.150.280 827 872 8.2E-6 T 23-04-2016 SD28_RS06420 b92d5f03dede69d8ac9354981547f804 1157 Pfam PF02811 PHP domain 4 167 3.1E-33 T 23-04-2016 IPR004013 PHP domain GO:0003824 SD28_RS06420 b92d5f03dede69d8ac9354981547f804 1157 Gene3D G3DSA:3.20.20.140 3 251 9.5E-18 T 23-04-2016 SD28_RS06420 b92d5f03dede69d8ac9354981547f804 1157 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 4 1025 0.0 T 23-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS02140 7935699a2d87d0a95e5204eafb351dc2 426 PANTHER PTHR11846 2 424 1.4E-180 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 SD28_RS02140 7935699a2d87d0a95e5204eafb351dc2 426 SUPERFAMILY SSF52540 1 425 1.7E-145 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02140 7935699a2d87d0a95e5204eafb351dc2 426 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 23-04-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 SD28_RS02140 7935699a2d87d0a95e5204eafb351dc2 426 Gene3D G3DSA:3.90.170.10 266 421 1.6E-50 T 23-04-2016 SD28_RS02140 7935699a2d87d0a95e5204eafb351dc2 426 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 425 6.1E-144 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 SD28_RS02140 7935699a2d87d0a95e5204eafb351dc2 426 Gene3D G3DSA:1.10.300.10 103 195 1.7E-26 T 23-04-2016 SD28_RS02140 7935699a2d87d0a95e5204eafb351dc2 426 SMART SM00788 3 420 7.5E-221 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 SD28_RS02140 7935699a2d87d0a95e5204eafb351dc2 426 Gene3D G3DSA:3.40.440.10 196 265 1.2E-62 T 23-04-2016 SD28_RS02140 7935699a2d87d0a95e5204eafb351dc2 426 Gene3D G3DSA:3.40.440.10 1 93 1.2E-62 T 23-04-2016 SD28_RS02140 7935699a2d87d0a95e5204eafb351dc2 426 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 426 162.321 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 SD28_RS02140 7935699a2d87d0a95e5204eafb351dc2 426 Pfam PF00709 Adenylosuccinate synthetase 4 418 3.9E-152 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 SD28_RS02140 7935699a2d87d0a95e5204eafb351dc2 426 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 132 143 - T 23-04-2016 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|UniPathway: UPA00075 SD28_RS02140 7935699a2d87d0a95e5204eafb351dc2 426 PANTHER PTHR11846:SF0 2 424 1.4E-180 T 23-04-2016 SD28_RS00790 41ab07acf9b9a4309048b5684b31bc4d 64 Pfam PF04380 Membrane fusogenic activity 18 59 4.5E-15 T 23-04-2016 IPR007475 Membrane fusogenic activity SD28_RS02280 5c2bea5660ccba448981f980fe6715e1 148 PANTHER PTHR11241 1 148 1.6E-43 T 23-04-2016 SD28_RS02280 5c2bea5660ccba448981f980fe6715e1 148 TIGRFAM TIGR00576 dut: dUTP diphosphatase 6 147 2.5E-41 T 23-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 SD28_RS02280 5c2bea5660ccba448981f980fe6715e1 148 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 1 148 29.433 T 23-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 SD28_RS02280 5c2bea5660ccba448981f980fe6715e1 148 Gene3D G3DSA:2.70.40.10 2 148 9.3E-49 T 23-04-2016 IPR029054 dUTPase-like SD28_RS02280 5c2bea5660ccba448981f980fe6715e1 148 Pfam PF00692 dUTPase 15 147 4.5E-32 T 23-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 SD28_RS02280 5c2bea5660ccba448981f980fe6715e1 148 SUPERFAMILY SSF51283 4 148 6.28E-45 T 23-04-2016 IPR029054 dUTPase-like SD28_RS01430 9b51548d8ca02abc938b5ffb4a03ef16 212 PANTHER PTHR30634:SF11 1 212 9.1E-19 T 23-04-2016 SD28_RS01430 9b51548d8ca02abc938b5ffb4a03ef16 212 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 16 211 1.6E-28 T 23-04-2016 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 SD28_RS01430 9b51548d8ca02abc938b5ffb4a03ef16 212 SUPERFAMILY SSF89392 49 212 1.96E-36 T 23-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX SD28_RS01430 9b51548d8ca02abc938b5ffb4a03ef16 212 Gene3D G3DSA:2.50.20.10 24 212 1.1E-45 T 23-04-2016 SD28_RS01430 9b51548d8ca02abc938b5ffb4a03ef16 212 PANTHER PTHR30634 1 212 9.1E-19 T 23-04-2016 SD28_RS01430 9b51548d8ca02abc938b5ffb4a03ef16 212 Pfam PF03550 Outer membrane lipoprotein LolB 59 210 6.5E-37 T 23-04-2016 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 SD28_RS07665 20869f5c079124d5950720fb1fbd07bb 206 PIRSF PIRSF005461 1 206 2.6E-74 T 23-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 SD28_RS07665 20869f5c079124d5950720fb1fbd07bb 206 SUPERFAMILY SSF53335 27 205 4.82E-39 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS07665 20869f5c079124d5950720fb1fbd07bb 206 PANTHER PTHR10920:SF20 1 205 2.6E-100 T 23-04-2016 SD28_RS07665 20869f5c079124d5950720fb1fbd07bb 206 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 8 204 28.111 T 23-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 SD28_RS07665 20869f5c079124d5950720fb1fbd07bb 206 Pfam PF01728 FtsJ-like methyltransferase 28 204 1.4E-54 T 23-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 SD28_RS07665 20869f5c079124d5950720fb1fbd07bb 206 PANTHER PTHR10920 1 205 2.6E-100 T 23-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 SD28_RS07665 20869f5c079124d5950720fb1fbd07bb 206 Gene3D G3DSA:3.40.50.150 4 205 1.7E-63 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS07220 f32f344dfeeadba6f82a6f1bd765ad82 352 Gene3D G3DSA:1.20.5.190 243 262 2.2E-4 T 23-04-2016 SD28_RS02395 ed1527687e405fc86b8aca71c0917ed2 166 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 23-04-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site SD28_RS02395 ed1527687e405fc86b8aca71c0917ed2 166 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 75 6.8E-26 T 23-04-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 SD28_RS02395 ed1527687e405fc86b8aca71c0917ed2 166 Pfam PF03719 Ribosomal protein S5, C-terminal domain 88 157 1.7E-29 T 23-04-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 SD28_RS02395 ed1527687e405fc86b8aca71c0917ed2 166 SUPERFAMILY SSF54768 9 76 1.88E-21 T 23-04-2016 SD28_RS02395 ed1527687e405fc86b8aca71c0917ed2 166 Gene3D G3DSA:3.30.230.10 77 158 5.5E-31 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SD28_RS02395 ed1527687e405fc86b8aca71c0917ed2 166 SUPERFAMILY SSF54211 79 158 7.59E-26 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS02395 ed1527687e405fc86b8aca71c0917ed2 166 PANTHER PTHR13718 9 166 2.4E-65 T 23-04-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 SD28_RS02395 ed1527687e405fc86b8aca71c0917ed2 166 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 33.087 T 23-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 SD28_RS02395 ed1527687e405fc86b8aca71c0917ed2 166 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 9 163 9.0E-63 T 23-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 SD28_RS02395 ed1527687e405fc86b8aca71c0917ed2 166 Gene3D G3DSA:3.30.160.20 9 72 1.7E-26 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 PANTHER PTHR10724:SF6 1 515 9.4E-224 T 23-04-2016 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 SUPERFAMILY SSF50249 190 277 7.63E-27 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 SUPERFAMILY SSF50249 255 361 2.35E-26 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 SUPERFAMILY SSF50249 88 175 2.34E-12 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 SMART SM00316 362 433 1.4E-22 T 23-04-2016 IPR022967 RNA-binding domain, S1 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 SMART SM00316 103 171 4.1E-6 T 23-04-2016 IPR022967 RNA-binding domain, S1 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 SMART SM00316 19 87 2.8E-5 T 23-04-2016 IPR022967 RNA-binding domain, S1 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 SMART SM00316 190 260 1.1E-27 T 23-04-2016 IPR022967 RNA-binding domain, S1 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 SMART SM00316 275 347 1.7E-19 T 23-04-2016 IPR022967 RNA-binding domain, S1 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 SMART SM00316 448 521 6.7E-19 T 23-04-2016 IPR022967 RNA-binding domain, S1 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 SUPERFAMILY SSF50249 1 112 1.52E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 SUPERFAMILY SSF50249 342 439 6.79E-23 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 Gene3D G3DSA:2.40.50.140 360 438 1.5E-25 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 Gene3D G3DSA:2.40.50.140 192 278 1.9E-30 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 Gene3D G3DSA:2.40.50.140 21 101 2.0E-10 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 Gene3D G3DSA:2.40.50.140 279 359 3.3E-27 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 Gene3D G3DSA:2.40.50.140 102 173 2.4E-13 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 Gene3D G3DSA:2.40.50.140 440 523 3.6E-22 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 Pfam PF00575 S1 RNA binding domain 362 433 5.4E-15 T 23-04-2016 IPR003029 S1 domain GO:0003676 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 Pfam PF00575 S1 RNA binding domain 103 171 3.0E-6 T 23-04-2016 IPR003029 S1 domain GO:0003676 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 Pfam PF00575 S1 RNA binding domain 274 347 9.0E-18 T 23-04-2016 IPR003029 S1 domain GO:0003676 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 Pfam PF00575 S1 RNA binding domain 447 521 2.6E-15 T 23-04-2016 IPR003029 S1 domain GO:0003676 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 Pfam PF00575 S1 RNA binding domain 19 85 4.9E-8 T 23-04-2016 IPR003029 S1 domain GO:0003676 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 Pfam PF00575 S1 RNA binding domain 190 260 3.5E-23 T 23-04-2016 IPR003029 S1 domain GO:0003676 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 PANTHER PTHR10724 1 515 9.4E-224 T 23-04-2016 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 521 5.1E-193 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 PRINTS PR00681 Ribosomal protein S1 signature 155 175 8.8E-77 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 PRINTS PR00681 Ribosomal protein S1 signature 290 309 8.8E-77 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 PRINTS PR00681 Ribosomal protein S1 signature 330 348 8.8E-77 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 PRINTS PR00681 Ribosomal protein S1 signature 108 124 8.8E-77 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 PRINTS PR00681 Ribosomal protein S1 signature 39 53 8.8E-77 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 PRINTS PR00681 Ribosomal protein S1 signature 126 143 8.8E-77 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 PRINTS PR00681 Ribosomal protein S1 signature 84 103 8.8E-77 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 PRINTS PR00681 Ribosomal protein S1 signature 21 39 8.8E-77 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 PRINTS PR00681 Ribosomal protein S1 signature 212 233 8.8E-77 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 SD28_RS01720 a2de09f5d34bffaa56d1f2b1e1b71076 555 SUPERFAMILY SSF50249 428 528 1.99E-19 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS06555 49212273d0ac3ee841b15e2744f158dc 167 Pfam PF00210 Ferritin-like domain 8 143 3.6E-40 T 23-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 SD28_RS06555 49212273d0ac3ee841b15e2744f158dc 167 SUPERFAMILY SSF47240 1 155 3.08E-52 T 23-04-2016 IPR009078 Ferritin-like superfamily SD28_RS06555 49212273d0ac3ee841b15e2744f158dc 167 PANTHER PTHR11431:SF4 3 162 6.8E-40 T 23-04-2016 SD28_RS06555 49212273d0ac3ee841b15e2744f158dc 167 PANTHER PTHR11431 3 162 6.8E-40 T 23-04-2016 IPR001519 Ferritin GO:0006826|GO:0006879|GO:0008199 SD28_RS06555 49212273d0ac3ee841b15e2744f158dc 167 Gene3D G3DSA:1.20.1260.10 1 163 1.5E-54 T 23-04-2016 IPR012347 Ferritin-related SD28_RS06175 62ff725a9c568e40b06e221e8a63ddd6 195 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS06175 62ff725a9c568e40b06e221e8a63ddd6 195 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 30 5.2E-8 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS06175 62ff725a9c568e40b06e221e8a63ddd6 195 Pfam PF13633 Prokaryotic N-terminal methylation site 7 31 8.1E-9 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS06175 62ff725a9c568e40b06e221e8a63ddd6 195 SUPERFAMILY SSF54523 10 163 2.04E-13 T 23-04-2016 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 PANTHER PTHR11817 1 476 1.1E-233 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 PRINTS PR01050 Pyruvate kinase family signature 245 269 2.0E-47 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 PRINTS PR01050 Pyruvate kinase family signature 186 200 2.0E-47 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 PRINTS PR01050 Pyruvate kinase family signature 270 294 2.0E-47 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 PRINTS PR01050 Pyruvate kinase family signature 59 75 2.0E-47 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 PRINTS PR01050 Pyruvate kinase family signature 295 313 2.0E-47 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 PRINTS PR01050 Pyruvate kinase family signature 218 244 2.0E-47 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 PRINTS PR01050 Pyruvate kinase family signature 314 330 2.0E-47 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 SUPERFAMILY SSF50800 70 164 2.09E-24 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 Pfam PF02887 Pyruvate kinase, alpha/beta domain 358 472 1.8E-23 T 23-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 SUPERFAMILY SSF51621 1 75 8.03E-88 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 SUPERFAMILY SSF51621 167 339 8.03E-88 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 SUPERFAMILY SSF52935 324 473 2.09E-31 T 23-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 Gene3D G3DSA:3.20.20.60 2 72 1.0E-93 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 Gene3D G3DSA:3.20.20.60 168 327 1.0E-93 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 Gene3D G3DSA:2.40.33.10 73 167 4.1E-27 T 23-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 471 9.0E-156 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 Gene3D G3DSA:3.40.1380.20 328 471 7.7E-35 T 23-04-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 PANTHER PTHR11817:SF17 1 476 1.1E-233 T 23-04-2016 SD28_RS06080 9a3425d4807db2e58ff2a3a363245a73 478 Pfam PF00224 Pyruvate kinase, barrel domain 1 339 2.9E-118 T 23-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS06210 ce545ead460c7691d1288debef42dca3 417 Pfam PF05193 Peptidase M16 inactive domain 169 348 2.8E-25 T 23-04-2016 IPR007863 Peptidase M16, C-terminal SD28_RS06210 ce545ead460c7691d1288debef42dca3 417 PANTHER PTHR11851 3 408 1.3E-86 T 23-04-2016 SD28_RS06210 ce545ead460c7691d1288debef42dca3 417 Gene3D G3DSA:3.30.830.10 234 412 1.5E-21 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 SD28_RS06210 ce545ead460c7691d1288debef42dca3 417 SUPERFAMILY SSF63411 233 414 2.5E-24 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 SD28_RS06210 ce545ead460c7691d1288debef42dca3 417 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 34 57 - T 23-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 SD28_RS06210 ce545ead460c7691d1288debef42dca3 417 Pfam PF00675 Insulinase (Peptidase family M16) 19 157 1.3E-25 T 23-04-2016 IPR011765 Peptidase M16, N-terminal SD28_RS06210 ce545ead460c7691d1288debef42dca3 417 PANTHER PTHR11851:SF136 3 408 1.3E-86 T 23-04-2016 SD28_RS06210 ce545ead460c7691d1288debef42dca3 417 SUPERFAMILY SSF63411 2 213 5.76E-59 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 SD28_RS06210 ce545ead460c7691d1288debef42dca3 417 Gene3D G3DSA:3.30.830.10 3 213 3.2E-55 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 SD28_RS05970 c551b9dae185dcd8aa355dce32a0cedc 409 Pfam PF07690 Major Facilitator Superfamily 14 366 1.2E-36 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS05970 c551b9dae185dcd8aa355dce32a0cedc 409 PANTHER PTHR23504 1 407 4.6E-50 T 23-04-2016 SD28_RS05970 c551b9dae185dcd8aa355dce32a0cedc 409 Gene3D G3DSA:1.20.1250.20 9 199 1.9E-27 T 23-04-2016 SD28_RS05970 c551b9dae185dcd8aa355dce32a0cedc 409 Gene3D G3DSA:1.20.1250.20 223 400 1.4E-10 T 23-04-2016 SD28_RS05970 c551b9dae185dcd8aa355dce32a0cedc 409 ProSitePatterns PS00216 Sugar transport proteins signature 1. 73 89 - T 23-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 SD28_RS05970 c551b9dae185dcd8aa355dce32a0cedc 409 PRINTS PR01035 Tetracycline resistance protein signature 385 404 2.1E-11 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 SD28_RS05970 c551b9dae185dcd8aa355dce32a0cedc 409 PRINTS PR01035 Tetracycline resistance protein signature 262 282 2.1E-11 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 SD28_RS05970 c551b9dae185dcd8aa355dce32a0cedc 409 PRINTS PR01035 Tetracycline resistance protein signature 146 168 2.1E-11 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 SD28_RS05970 c551b9dae185dcd8aa355dce32a0cedc 409 PRINTS PR01035 Tetracycline resistance protein signature 19 35 2.1E-11 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 SD28_RS05970 c551b9dae185dcd8aa355dce32a0cedc 409 PANTHER PTHR23504:SF18 1 407 4.6E-50 T 23-04-2016 SD28_RS05970 c551b9dae185dcd8aa355dce32a0cedc 409 SUPERFAMILY SSF103473 6 402 7.72E-45 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 SUPERFAMILY SSF46955 405 477 8.24E-17 T 23-04-2016 IPR009061 Putative DNA-binding domain SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 Pfam PF03147 Ferredoxin-fold anticodon binding domain 697 788 5.5E-23 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 Gene3D G3DSA:3.30.56.10 156 185 9.4E-27 T 23-04-2016 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 Gene3D G3DSA:3.30.56.10 1 38 9.4E-27 T 23-04-2016 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 788 1.5E-258 T 23-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 SMART SM00874 404 473 1.6E-22 T 23-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 SUPERFAMILY SSF56037 198 394 4.45E-67 T 23-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 Gene3D G3DSA:3.30.56.20 403 477 2.7E-22 T 23-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 SMART SM00896 697 788 5.1E-30 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 Gene3D G3DSA:2.40.50.140 42 155 1.0E-46 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 PANTHER PTHR10947:SF0 2 788 1.7E-252 T 23-04-2016 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 PANTHER PTHR10947 2 788 1.7E-252 T 23-04-2016 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 SUPERFAMILY SSF50249 42 197 2.17E-50 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 782 42.844 T 23-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 SMART SM00873 213 386 2.1E-82 T 23-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 Gene3D G3DSA:3.50.40.10 200 393 1.9E-73 T 23-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 Pfam PF03483 B3/4 domain 213 386 1.3E-64 T 23-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 Gene3D G3DSA:3.30.930.10 496 685 1.4E-50 T 23-04-2016 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 Pfam PF03484 tRNA synthetase B5 domain 407 473 4.8E-17 T 23-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 Gene3D G3DSA:3.30.70.380 699 788 1.1E-21 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 Pfam PF01588 Putative tRNA binding domain 46 146 7.0E-26 T 23-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 SUPERFAMILY SSF54991 692 788 2.35E-24 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 SD28_RS05285 3653f0f7d3719d39c8921d06f169de0f 789 SUPERFAMILY SSF55681 469 686 3.58E-43 T 23-04-2016 SD28_RS04415 d3d55e3abba83521c9db825fa56cd05c 305 SUPERFAMILY SSF53474 42 303 2.47E-54 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS04415 d3d55e3abba83521c9db825fa56cd05c 305 PANTHER PTHR23024 20 303 5.4E-60 T 23-04-2016 SD28_RS04415 d3d55e3abba83521c9db825fa56cd05c 305 PANTHER PTHR23024:SF24 20 303 5.4E-60 T 23-04-2016 SD28_RS04415 d3d55e3abba83521c9db825fa56cd05c 305 Pfam PF07859 alpha/beta hydrolase fold 73 280 6.5E-56 T 23-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 SD28_RS04415 d3d55e3abba83521c9db825fa56cd05c 305 Gene3D G3DSA:3.40.50.1820 15 303 2.4E-69 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS03740 a8b0f292f3f19e2897053c813a3dd430 157 SUPERFAMILY SSF53098 8 146 1.1E-55 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS03740 a8b0f292f3f19e2897053c813a3dd430 157 Gene3D G3DSA:3.30.420.10 8 147 8.3E-60 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS03740 a8b0f292f3f19e2897053c813a3dd430 157 Hamap MF_00042 Ribonuclease H [rnhA]. 7 155 31.326 T 23-04-2016 IPR022892 Ribonuclease H GO:0004523 SD28_RS03740 a8b0f292f3f19e2897053c813a3dd430 157 Pfam PF00075 RNase H 8 146 2.1E-50 T 23-04-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 SD28_RS03740 a8b0f292f3f19e2897053c813a3dd430 157 PANTHER PTHR10642 8 146 1.2E-55 T 23-04-2016 SD28_RS05995 9450cd5c5811606d61bbd2f7a59db24b 208 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 208 27.584 T 23-04-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 SD28_RS05995 9450cd5c5811606d61bbd2f7a59db24b 208 Pfam PF00156 Phosphoribosyl transferase domain 37 164 7.5E-16 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 SD28_RS05995 9450cd5c5811606d61bbd2f7a59db24b 208 SUPERFAMILY SSF53271 2 188 3.15E-42 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS05995 9450cd5c5811606d61bbd2f7a59db24b 208 PANTHER PTHR19278 2 207 1.0E-85 T 23-04-2016 SD28_RS05995 9450cd5c5811606d61bbd2f7a59db24b 208 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 4 181 3.2E-53 T 23-04-2016 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 SD28_RS05995 9450cd5c5811606d61bbd2f7a59db24b 208 Gene3D G3DSA:3.40.50.2020 2 207 4.3E-77 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS05995 9450cd5c5811606d61bbd2f7a59db24b 208 PANTHER PTHR19278:SF36 2 207 1.0E-85 T 23-04-2016 SD28_RS02310 c5cb2808a2a5cf9f610d0dbd5e95e412 210 PANTHER PTHR11229 4 209 1.3E-111 T 23-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02310 c5cb2808a2a5cf9f610d0dbd5e95e412 210 SUPERFAMILY SSF50447 2 209 1.15E-80 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain SD28_RS02310 c5cb2808a2a5cf9f610d0dbd5e95e412 210 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 23-04-2016 IPR019926 Ribosomal protein L3, conserved site SD28_RS02310 c5cb2808a2a5cf9f610d0dbd5e95e412 210 Pfam PF00297 Ribosomal protein L3 99 183 3.2E-12 T 23-04-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02310 c5cb2808a2a5cf9f610d0dbd5e95e412 210 Gene3D G3DSA:2.40.30.10 4 33 7.8E-8 T 23-04-2016 SD28_RS02310 c5cb2808a2a5cf9f610d0dbd5e95e412 210 Gene3D G3DSA:2.40.30.10 159 196 7.8E-8 T 23-04-2016 SD28_RS02310 c5cb2808a2a5cf9f610d0dbd5e95e412 210 Gene3D G3DSA:4.10.960.10 77 158 1.1E-32 T 23-04-2016 SD28_RS02310 c5cb2808a2a5cf9f610d0dbd5e95e412 210 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 208 39.155 T 23-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02310 c5cb2808a2a5cf9f610d0dbd5e95e412 210 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 204 1.2E-88 T 23-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 SMART SM01240 7 473 0.0 T 23-04-2016 SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 SUPERFAMILY SSF51412 217 477 6.28E-125 T 23-04-2016 SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 SUPERFAMILY SSF51412 2 90 6.28E-125 T 23-04-2016 SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 SUPERFAMILY SSF54631 93 203 9.22E-29 T 23-04-2016 SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 23-04-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 SMART SM00116 96 144 1.4E-8 T 23-04-2016 IPR000644 CBS domain SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 SMART SM00116 158 206 3.4E-6 T 23-04-2016 IPR000644 CBS domain SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 PIRSF PIRSF000130 1 486 3.3E-205 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 454 7.0E-196 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 Gene3D G3DSA:3.20.20.70 4 485 1.0E-197 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 PANTHER PTHR11911 300 484 2.3E-241 T 23-04-2016 SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 PANTHER PTHR11911 1 282 2.3E-241 T 23-04-2016 SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 Pfam PF00571 CBS domain 93 141 2.7E-11 T 23-04-2016 IPR000644 CBS domain SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 Pfam PF00571 CBS domain 149 201 9.6E-5 T 23-04-2016 IPR000644 CBS domain SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 486 82.684 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 473 9.5E-165 T 23-04-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 PANTHER PTHR11911:SF6 300 484 2.3E-241 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 SD28_RS06190 939579560bfa8586c00dd6f23394355a 486 PANTHER PTHR11911:SF6 1 282 2.3E-241 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 SD28_RS04750 0d5b00ce131ef971510a7afb3173ecbd 402 PANTHER PTHR23502 11 392 5.1E-65 T 23-04-2016 SD28_RS04750 0d5b00ce131ef971510a7afb3173ecbd 402 SUPERFAMILY SSF103473 10 393 1.7E-52 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS04750 0d5b00ce131ef971510a7afb3173ecbd 402 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 8 389 2.4E-63 T 23-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 SD28_RS04750 0d5b00ce131ef971510a7afb3173ecbd 402 Gene3D G3DSA:1.20.1250.20 15 194 9.8E-26 T 23-04-2016 SD28_RS04750 0d5b00ce131ef971510a7afb3173ecbd 402 Pfam PF07690 Major Facilitator Superfamily 18 355 9.4E-39 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS04750 0d5b00ce131ef971510a7afb3173ecbd 402 PANTHER PTHR23502:SF19 11 392 5.1E-65 T 23-04-2016 SD28_RS04750 0d5b00ce131ef971510a7afb3173ecbd 402 Gene3D G3DSA:1.20.1250.20 224 390 2.4E-4 T 23-04-2016 SD28_RS02970 be48b3a6c05760afed9157f4f2dda8b4 377 SUPERFAMILY SSF53383 5 376 5.72E-90 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS02970 be48b3a6c05760afed9157f4f2dda8b4 377 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 225 238 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 SD28_RS02970 be48b3a6c05760afed9157f4f2dda8b4 377 Pfam PF00155 Aminotransferase class I and II 27 366 2.6E-56 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SD28_RS02970 be48b3a6c05760afed9157f4f2dda8b4 377 Gene3D G3DSA:3.90.1150.10 265 375 2.1E-12 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS02970 be48b3a6c05760afed9157f4f2dda8b4 377 Gene3D G3DSA:3.40.640.10 39 264 2.2E-64 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS02970 be48b3a6c05760afed9157f4f2dda8b4 377 PANTHER PTHR11751 6 377 4.9E-93 T 23-04-2016 SD28_RS02970 be48b3a6c05760afed9157f4f2dda8b4 377 PANTHER PTHR11751:SF301 6 377 4.9E-93 T 23-04-2016 SD28_RS06660 bdcc49b938ce13d235fb1d48971938b1 629 PANTHER PTHR31497:SF0 103 511 1.5E-77 T 23-04-2016 SD28_RS06660 bdcc49b938ce13d235fb1d48971938b1 629 SUPERFAMILY SSF53474 207 383 1.28E-7 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS06660 bdcc49b938ce13d235fb1d48971938b1 629 Gene3D G3DSA:3.40.50.1820 206 385 6.3E-9 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS06660 bdcc49b938ce13d235fb1d48971938b1 629 PANTHER PTHR31497 103 511 1.5E-77 T 23-04-2016 SD28_RS06660 bdcc49b938ce13d235fb1d48971938b1 629 Pfam PF10142 PhoPQ-activated pathogenicity-related protein 101 437 1.7E-80 T 23-04-2016 IPR009199 PhoPQ-activated pathogenicity-related protein, PqaA type SD28_RS02880 7b18eddbea6dfec4a467d59631d851b6 257 PANTHER PTHR30269:SF0 10 244 1.4E-59 T 23-04-2016 SD28_RS02880 7b18eddbea6dfec4a467d59631d851b6 257 PANTHER PTHR30269 10 244 1.4E-59 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 SD28_RS02880 7b18eddbea6dfec4a467d59631d851b6 257 Pfam PF01925 Sulfite exporter TauE/SafE 17 246 1.7E-36 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 SD28_RS02870 8dcf593e5924c4ef137228342344dd02 238 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 234 2.8E-27 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SD28_RS02870 8dcf593e5924c4ef137228342344dd02 238 PANTHER PTHR18966 1 200 7.4E-28 T 23-04-2016 SD28_RS02870 8dcf593e5924c4ef137228342344dd02 238 PANTHER PTHR18966:SF243 1 200 7.4E-28 T 23-04-2016 SD28_RS02870 8dcf593e5924c4ef137228342344dd02 238 Gene3D G3DSA:3.40.190.10 21 108 3.6E-22 T 23-04-2016 SD28_RS02870 8dcf593e5924c4ef137228342344dd02 238 Gene3D G3DSA:3.40.190.10 209 234 3.6E-22 T 23-04-2016 SD28_RS02870 8dcf593e5924c4ef137228342344dd02 238 SUPERFAMILY SSF53850 21 236 6.67E-32 T 23-04-2016 SD28_RS02870 8dcf593e5924c4ef137228342344dd02 238 SMART SM00062 21 238 8.7E-9 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 Pfam PF03486 HI0933-like protein 9 395 1.0E-143 T 23-04-2016 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 350 372 5.2E-6 T 23-04-2016 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 157 175 5.2E-6 T 23-04-2016 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 11 30 5.2E-6 T 23-04-2016 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 PANTHER PTHR10617:SF103 333 397 1.1E-111 T 23-04-2016 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 PANTHER PTHR10617:SF103 4 293 1.1E-111 T 23-04-2016 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 Gene3D G3DSA:2.40.30.10 193 269 6.8E-26 T 23-04-2016 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 SUPERFAMILY SSF51905 7 193 2.71E-55 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 SUPERFAMILY SSF51905 340 396 2.71E-55 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 365 372 3.3E-7 T 23-04-2016 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 10 32 3.3E-7 T 23-04-2016 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 160 169 3.3E-7 T 23-04-2016 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 PANTHER PTHR10617 333 397 1.1E-111 T 23-04-2016 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 PANTHER PTHR10617 4 293 1.1E-111 T 23-04-2016 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 Gene3D G3DSA:3.50.50.60 7 191 1.1E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 Gene3D G3DSA:3.50.50.60 342 395 1.1E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 Gene3D G3DSA:1.10.8.260 270 325 3.4E-9 T 23-04-2016 IPR023166 HI0933 insert-like domain SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 SUPERFAMILY SSF160996 195 343 2.35E-33 T 23-04-2016 SD28_RS07410 28d82ed7fca3f36104ac152da955d0be 397 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 11 395 4.6E-122 T 23-04-2016 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like SD28_RS07330 aa06eefb8610f3249bebb823117ed3b6 589 Gene3D G3DSA:3.40.50.300 122 363 2.8E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07330 aa06eefb8610f3249bebb823117ed3b6 589 SUPERFAMILY SSF52540 165 321 4.6E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07330 aa06eefb8610f3249bebb823117ed3b6 589 SUPERFAMILY SSF52540 348 563 4.6E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07330 aa06eefb8610f3249bebb823117ed3b6 589 Gene3D G3DSA:3.40.50.300 503 572 3.0E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07330 aa06eefb8610f3249bebb823117ed3b6 589 Gene3D G3DSA:3.40.50.300 364 453 3.0E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07330 aa06eefb8610f3249bebb823117ed3b6 589 Pfam PF13538 UvrD-like helicase C-terminal domain 511 558 8.8E-12 T 23-04-2016 IPR027785 UvrD-like helicase C-terminal domain SD28_RS07330 aa06eefb8610f3249bebb823117ed3b6 589 PANTHER PTHR10887:SF284 109 458 5.3E-54 T 23-04-2016 SD28_RS07330 aa06eefb8610f3249bebb823117ed3b6 589 PANTHER PTHR10887:SF284 511 571 5.3E-54 T 23-04-2016 SD28_RS07330 aa06eefb8610f3249bebb823117ed3b6 589 Pfam PF13604 AAA domain 166 319 4.2E-25 T 23-04-2016 SD28_RS07330 aa06eefb8610f3249bebb823117ed3b6 589 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 24 579 2.0E-137 T 23-04-2016 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 SD28_RS07330 aa06eefb8610f3249bebb823117ed3b6 589 PANTHER PTHR10887 109 458 5.3E-54 T 23-04-2016 SD28_RS07330 aa06eefb8610f3249bebb823117ed3b6 589 PANTHER PTHR10887 511 571 5.3E-54 T 23-04-2016 SD28_RS07330 aa06eefb8610f3249bebb823117ed3b6 589 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 22 582 39.073 T 23-04-2016 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 SD28_RS00785 dbdbab74839ed479288b59f00fcdfef4 503 SUPERFAMILY SSF54211 9 170 3.49E-29 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS00785 dbdbab74839ed479288b59f00fcdfef4 503 Pfam PF01078 Magnesium chelatase, subunit ChlI 191 396 4.4E-96 T 23-04-2016 IPR000523 Magnesium chelatase ChlI domain SD28_RS00785 dbdbab74839ed479288b59f00fcdfef4 503 PANTHER PTHR32039 1 503 1.2E-244 T 23-04-2016 SD28_RS00785 dbdbab74839ed479288b59f00fcdfef4 503 SMART SM00382 211 393 1.1E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS00785 dbdbab74839ed479288b59f00fcdfef4 503 Gene3D G3DSA:3.30.230.10 11 168 1.3E-25 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SD28_RS00785 dbdbab74839ed479288b59f00fcdfef4 503 Gene3D G3DSA:3.40.50.300 191 389 9.8E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00785 dbdbab74839ed479288b59f00fcdfef4 503 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 8 496 7.8E-195 T 23-04-2016 IPR004482 Mg chelatase-related protein SD28_RS00785 dbdbab74839ed479288b59f00fcdfef4 503 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 404 496 1.8E-29 T 23-04-2016 IPR025158 Mg chelatase-related protein, C-terminal domain SD28_RS00785 dbdbab74839ed479288b59f00fcdfef4 503 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 143 2.1E-44 T 23-04-2016 SD28_RS00785 dbdbab74839ed479288b59f00fcdfef4 503 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 318 331 3.8E-7 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 SD28_RS00785 dbdbab74839ed479288b59f00fcdfef4 503 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 342 354 3.8E-7 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 SD28_RS00785 dbdbab74839ed479288b59f00fcdfef4 503 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 290 304 3.8E-7 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 SD28_RS00785 dbdbab74839ed479288b59f00fcdfef4 503 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 210 225 3.8E-7 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 SD28_RS00785 dbdbab74839ed479288b59f00fcdfef4 503 PANTHER PTHR32039:SF7 1 503 1.2E-244 T 23-04-2016 IPR004482 Mg chelatase-related protein SD28_RS00785 dbdbab74839ed479288b59f00fcdfef4 503 SUPERFAMILY SSF52540 190 499 3.05E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03630 3abbdff4918afe0c457138a876672f00 939 Pfam PF08245 Mur ligase middle domain 499 713 3.1E-20 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS03630 3abbdff4918afe0c457138a876672f00 939 SUPERFAMILY SSF53623 456 750 9.68E-44 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS03630 3abbdff4918afe0c457138a876672f00 939 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 228 313 2.3E-5 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SD28_RS03630 3abbdff4918afe0c457138a876672f00 939 PANTHER PTHR23135 397 911 5.8E-139 T 23-04-2016 SD28_RS03630 3abbdff4918afe0c457138a876672f00 939 Gene3D G3DSA:3.90.190.20 740 868 8.5E-23 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS03630 3abbdff4918afe0c457138a876672f00 939 Gene3D G3DSA:3.40.1190.10 493 730 2.5E-38 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS03630 3abbdff4918afe0c457138a876672f00 939 PANTHER PTHR23135:SF18 397 911 5.8E-139 T 23-04-2016 SD28_RS03630 3abbdff4918afe0c457138a876672f00 939 Gene3D G3DSA:3.30.470.20 221 344 3.2E-25 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS03630 3abbdff4918afe0c457138a876672f00 939 Gene3D G3DSA:3.30.470.20 405 466 3.2E-25 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS03630 3abbdff4918afe0c457138a876672f00 939 TIGRFAM TIGR02068 cya_phycin_syn: cyanophycin synthetase 3 881 0.0 T 23-04-2016 IPR011810 Cyanophycin synthetase GO:0005524|GO:0009059|GO:0016874 MetaCyc: PWY-7052 SD28_RS03630 3abbdff4918afe0c457138a876672f00 939 SUPERFAMILY SSF53244 738 867 4.21E-25 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS03630 3abbdff4918afe0c457138a876672f00 939 Pfam PF02875 Mur ligase family, glutamate ligase domain 737 820 1.5E-9 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS03630 3abbdff4918afe0c457138a876672f00 939 SUPERFAMILY SSF56059 389 481 5.3E-34 T 23-04-2016 SD28_RS03630 3abbdff4918afe0c457138a876672f00 939 SUPERFAMILY SSF56059 227 337 5.3E-34 T 23-04-2016 SD28_RS01895 c0f37d41246d27cb23df73eb47515a81 139 PANTHER PTHR33202 8 137 1.0E-36 T 23-04-2016 SD28_RS01895 c0f37d41246d27cb23df73eb47515a81 139 SUPERFAMILY SSF46785 8 134 2.33E-37 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS01895 c0f37d41246d27cb23df73eb47515a81 139 Pfam PF01475 Ferric uptake regulator family 12 130 2.6E-41 T 23-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 SD28_RS01895 c0f37d41246d27cb23df73eb47515a81 139 Gene3D G3DSA:1.10.10.10 7 83 8.1E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS05260 510a455ea98d5ee63e6a42c86d28d6b7 337 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 337 47.92 T 23-04-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 SD28_RS05260 510a455ea98d5ee63e6a42c86d28d6b7 337 SUPERFAMILY SSF46589 13 97 2.41E-18 T 23-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 SD28_RS05260 510a455ea98d5ee63e6a42c86d28d6b7 337 PANTHER PTHR11538 104 337 3.9E-103 T 23-04-2016 SD28_RS05260 510a455ea98d5ee63e6a42c86d28d6b7 337 Pfam PF01409 tRNA synthetases class II core domain (F) 91 337 2.2E-103 T 23-04-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 SD28_RS05260 510a455ea98d5ee63e6a42c86d28d6b7 337 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 337 1.3E-104 T 23-04-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 SD28_RS05260 510a455ea98d5ee63e6a42c86d28d6b7 337 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 1.1E-22 T 23-04-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 SD28_RS05260 510a455ea98d5ee63e6a42c86d28d6b7 337 Gene3D G3DSA:3.30.930.10 8 337 1.9E-126 T 23-04-2016 SD28_RS05260 510a455ea98d5ee63e6a42c86d28d6b7 337 SUPERFAMILY SSF55681 91 337 2.98E-77 T 23-04-2016 SD28_RS07225 791b92dd78cecd9323726571967a1167 67 PANTHER PTHR11544 1 67 3.5E-22 T 23-04-2016 SD28_RS07225 791b92dd78cecd9323726571967a1167 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 23-04-2016 IPR019844 Cold-shock conserved site SD28_RS07225 791b92dd78cecd9323726571967a1167 67 SMART SM00357 6 67 5.2E-21 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 SD28_RS07225 791b92dd78cecd9323726571967a1167 67 PIRSF PIRSF002599 1 67 2.4E-20 T 23-04-2016 IPR012156 Cold shock, CspA GO:0003676 SD28_RS07225 791b92dd78cecd9323726571967a1167 67 SUPERFAMILY SSF50249 3 66 3.43E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS07225 791b92dd78cecd9323726571967a1167 67 Pfam PF00313 'Cold-shock' DNA-binding domain 6 65 2.4E-24 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 SD28_RS07225 791b92dd78cecd9323726571967a1167 67 Gene3D G3DSA:2.40.50.140 6 66 2.8E-26 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS07225 791b92dd78cecd9323726571967a1167 67 PRINTS PR00050 Cold shock protein signature 7 22 2.0E-10 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 SD28_RS07225 791b92dd78cecd9323726571967a1167 67 PRINTS PR00050 Cold shock protein signature 40 58 2.0E-10 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 699 1.5E-209 T 23-04-2016 IPR004811 RelA/SpoT family GO:0015969 SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 SUPERFAMILY SSF55021 628 700 9.16E-7 T 23-04-2016 SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 SMART SM00954 235 345 1.2E-55 T 23-04-2016 IPR007685 RelA/SpoT GO:0015969 SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 Pfam PF04607 Region found in RelA / SpoT proteins 236 344 2.3E-32 T 23-04-2016 IPR007685 RelA/SpoT GO:0015969 SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 Pfam PF02824 TGS domain 384 443 6.9E-22 T 23-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 SUPERFAMILY SSF109604 4 188 2.75E-70 T 23-04-2016 SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 Gene3D G3DSA:3.10.20.30 384 444 3.7E-22 T 23-04-2016 IPR012675 Beta-grasp domain SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 SUPERFAMILY SSF81301 181 388 5.89E-54 T 23-04-2016 SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 PANTHER PTHR21262:SF0 1 703 9.5E-266 T 23-04-2016 SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 Pfam PF13328 HD domain 26 175 1.7E-53 T 23-04-2016 IPR003607 HD/PDEase domain SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 PANTHER PTHR21262 1 703 9.5E-266 T 23-04-2016 SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 Gene3D G3DSA:3.30.460.10 194 325 1.4E-39 T 23-04-2016 SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 Gene3D G3DSA:3.30.70.260 626 695 3.7E-6 T 23-04-2016 SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 SUPERFAMILY SSF81271 371 444 2.01E-22 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 Pfam PF13291 ACT domain 625 700 6.1E-8 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 SD28_RS06490 43c7948b8736c11c3cd030f29a4a95a9 704 SMART SM00471 41 153 6.5E-13 T 23-04-2016 IPR003607 HD/PDEase domain SD28_RS05090 906492aae52f66769cf6a48fe0d579d5 211 Gene3D G3DSA:1.20.1260.10 51 180 4.1E-10 T 23-04-2016 IPR012347 Ferritin-related SD28_RS05090 906492aae52f66769cf6a48fe0d579d5 211 PANTHER PTHR11237 2 211 1.9E-92 T 23-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 SD28_RS05090 906492aae52f66769cf6a48fe0d579d5 211 PANTHER PTHR11237:SF3 2 211 1.9E-92 T 23-04-2016 SD28_RS05090 906492aae52f66769cf6a48fe0d579d5 211 SUPERFAMILY SSF47240 45 125 1.91E-16 T 23-04-2016 IPR009078 Ferritin-like superfamily SD28_RS05090 906492aae52f66769cf6a48fe0d579d5 211 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 11 211 27.986 T 23-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 SD28_RS05090 906492aae52f66769cf6a48fe0d579d5 211 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 52 209 4.3E-37 T 23-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 SD28_RS04125 7bfa2b7b814c4488ffb50ef769f0a472 274 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 1 248 40.943 T 23-04-2016 IPR017689 Outer membrane protein assembly factor BamD SD28_RS04125 7bfa2b7b814c4488ffb50ef769f0a472 274 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 252 2.3E-65 T 23-04-2016 IPR017689 Outer membrane protein assembly factor BamD SD28_RS04125 7bfa2b7b814c4488ffb50ef769f0a472 274 PANTHER PTHR37423 1 272 2.1E-55 T 23-04-2016 SD28_RS04125 7bfa2b7b814c4488ffb50ef769f0a472 274 Pfam PF13525 Outer membrane lipoprotein 37 237 8.9E-45 T 23-04-2016 SD28_RS04125 7bfa2b7b814c4488ffb50ef769f0a472 274 SMART SM00028 180 213 0.12 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 SD28_RS04125 7bfa2b7b814c4488ffb50ef769f0a472 274 SMART SM00028 37 70 120.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 SD28_RS04125 7bfa2b7b814c4488ffb50ef769f0a472 274 SUPERFAMILY SSF48452 36 161 2.42E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS04125 7bfa2b7b814c4488ffb50ef769f0a472 274 Gene3D G3DSA:1.25.40.10 37 153 2.8E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS04125 7bfa2b7b814c4488ffb50ef769f0a472 274 SUPERFAMILY SSF48452 145 254 5.06E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS04125 7bfa2b7b814c4488ffb50ef769f0a472 274 Gene3D G3DSA:1.25.40.10 154 255 2.1E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS04990 b3ae58fa0920ef381ddb92e443e11d26 194 Gene3D G3DSA:2.30.110.10 4 194 1.5E-52 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 SD28_RS04990 b3ae58fa0920ef381ddb92e443e11d26 194 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 154 194 4.7E-10 T 23-04-2016 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 SD28_RS04990 b3ae58fa0920ef381ddb92e443e11d26 194 PANTHER PTHR10851 4 194 7.5E-54 T 23-04-2016 SD28_RS04990 b3ae58fa0920ef381ddb92e443e11d26 194 PIRSF PIRSF000190 1 194 3.9E-53 T 23-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 SD28_RS04990 b3ae58fa0920ef381ddb92e443e11d26 194 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 4 194 9.7E-50 T 23-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 SD28_RS04990 b3ae58fa0920ef381ddb92e443e11d26 194 SUPERFAMILY SSF50475 15 194 2.06E-43 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 SD28_RS04990 b3ae58fa0920ef381ddb92e443e11d26 194 PANTHER PTHR10851:SF0 4 194 7.5E-54 T 23-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 SD28_RS04990 b3ae58fa0920ef381ddb92e443e11d26 194 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 21 98 5.1E-16 T 23-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 SD28_RS01570 1940730637762b2a0ed2dcac5481c957 360 SUPERFAMILY SSF53098 53 342 1.67E-25 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS01570 1940730637762b2a0ed2dcac5481c957 360 Pfam PF13546 DDE superfamily endonuclease 4 204 1.2E-12 T 23-04-2016 SD28_RS01570 1940730637762b2a0ed2dcac5481c957 360 Gene3D G3DSA:3.90.350.10 256 292 1.9E-4 T 23-04-2016 IPR014736 Transposase, Tn5-like, core SD28_RS06670 1940730637762b2a0ed2dcac5481c957 360 SUPERFAMILY SSF53098 53 342 1.67E-25 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS06670 1940730637762b2a0ed2dcac5481c957 360 Pfam PF13546 DDE superfamily endonuclease 4 204 1.2E-12 T 23-04-2016 SD28_RS06670 1940730637762b2a0ed2dcac5481c957 360 Gene3D G3DSA:3.90.350.10 256 292 1.9E-4 T 23-04-2016 IPR014736 Transposase, Tn5-like, core SD28_RS04600 1940730637762b2a0ed2dcac5481c957 360 SUPERFAMILY SSF53098 53 342 1.67E-25 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS04600 1940730637762b2a0ed2dcac5481c957 360 Pfam PF13546 DDE superfamily endonuclease 4 204 1.2E-12 T 23-04-2016 SD28_RS04600 1940730637762b2a0ed2dcac5481c957 360 Gene3D G3DSA:3.90.350.10 256 292 1.9E-4 T 23-04-2016 IPR014736 Transposase, Tn5-like, core SD28_RS01150 c688b7220869acdb089ebda858a9c999 206 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 12 203 3.4E-24 T 23-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 SD28_RS01150 c688b7220869acdb089ebda858a9c999 206 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 4 198 8.7E-30 T 23-04-2016 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 SD28_RS01150 c688b7220869acdb089ebda858a9c999 206 Gene3D G3DSA:3.20.20.70 2 204 8.1E-40 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS01150 c688b7220869acdb089ebda858a9c999 206 SMART SM00934 1 205 6.8E-27 T 23-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 SD28_RS01150 c688b7220869acdb089ebda858a9c999 206 PANTHER PTHR32119 16 206 2.5E-28 T 23-04-2016 SD28_RS01150 c688b7220869acdb089ebda858a9c999 206 SUPERFAMILY SSF51366 4 205 5.03E-33 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 SD28_RS01150 c688b7220869acdb089ebda858a9c999 206 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 49 62 - T 23-04-2016 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 SD28_RS05395 c3c164f2579fe87ed4f89098d0b10ca4 463 PRINTS PR00481 Cytosol aminopeptidase signature 282 303 3.4E-37 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 SD28_RS05395 c3c164f2579fe87ed4f89098d0b10ca4 463 PRINTS PR00481 Cytosol aminopeptidase signature 245 266 3.4E-37 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 SD28_RS05395 c3c164f2579fe87ed4f89098d0b10ca4 463 PRINTS PR00481 Cytosol aminopeptidase signature 332 347 3.4E-37 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 SD28_RS05395 c3c164f2579fe87ed4f89098d0b10ca4 463 PRINTS PR00481 Cytosol aminopeptidase signature 223 240 3.4E-37 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 SD28_RS05395 c3c164f2579fe87ed4f89098d0b10ca4 463 PRINTS PR00481 Cytosol aminopeptidase signature 304 324 3.4E-37 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 SD28_RS05395 c3c164f2579fe87ed4f89098d0b10ca4 463 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 308 315 - T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 SD28_RS05395 c3c164f2579fe87ed4f89098d0b10ca4 463 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 149 450 8.6E-91 T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 SD28_RS05395 c3c164f2579fe87ed4f89098d0b10ca4 463 PANTHER PTHR11963 92 457 3.0E-107 T 23-04-2016 SD28_RS05395 c3c164f2579fe87ed4f89098d0b10ca4 463 SUPERFAMILY SSF53187 145 456 1.16E-92 T 23-04-2016 SD28_RS05395 c3c164f2579fe87ed4f89098d0b10ca4 463 Gene3D G3DSA:3.40.630.10 144 458 2.5E-100 T 23-04-2016 SD28_RS05395 c3c164f2579fe87ed4f89098d0b10ca4 463 PANTHER PTHR11963:SF13 92 457 3.0E-107 T 23-04-2016 SD28_RS03655 62b9539a0a0722d79993d1af076b85a3 490 Gene3D G3DSA:3.40.190.10 250 382 2.5E-52 T 23-04-2016 SD28_RS03655 62b9539a0a0722d79993d1af076b85a3 490 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 206 1.6E-20 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 SD28_RS03655 62b9539a0a0722d79993d1af076b85a3 490 Pfam PF03180 NLPA lipoprotein 253 490 5.4E-78 T 23-04-2016 IPR004872 Lipoprotein NlpA family SD28_RS03655 62b9539a0a0722d79993d1af076b85a3 490 Gene3D G3DSA:1.10.3720.10 13 216 7.1E-37 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 SD28_RS03655 62b9539a0a0722d79993d1af076b85a3 490 SUPERFAMILY SSF161098 14 208 1.44E-41 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 SD28_RS03655 62b9539a0a0722d79993d1af076b85a3 490 PANTHER PTHR30429 219 490 2.1E-98 T 23-04-2016 IPR004872 Lipoprotein NlpA family SD28_RS03655 62b9539a0a0722d79993d1af076b85a3 490 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 237 490 1.4E-74 T 23-04-2016 IPR004872 Lipoprotein NlpA family SD28_RS03655 62b9539a0a0722d79993d1af076b85a3 490 SUPERFAMILY SSF53850 252 490 1.45E-72 T 23-04-2016 SD28_RS02050 9410cb49b59a87473f1be69a5ecd9411 230 SMART SM00729 15 215 7.6E-4 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 SD28_RS02270 5a8597ccf70f82cd71e6c71bf9db8120 240 Gene3D G3DSA:3.40.1180.10 9 239 1.2E-83 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 SD28_RS02270 5a8597ccf70f82cd71e6c71bf9db8120 240 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 180 197 - T 23-04-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 SD28_RS02270 5a8597ccf70f82cd71e6c71bf9db8120 240 Pfam PF01255 Putative undecaprenyl diphosphate synthase 15 234 9.2E-70 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 SD28_RS02270 5a8597ccf70f82cd71e6c71bf9db8120 240 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 10 234 1.0E-79 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 SD28_RS02270 5a8597ccf70f82cd71e6c71bf9db8120 240 SUPERFAMILY SSF64005 10 230 7.06E-73 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 SD28_RS02270 5a8597ccf70f82cd71e6c71bf9db8120 240 PANTHER PTHR10291 10 235 2.0E-95 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 SD28_RS02270 5a8597ccf70f82cd71e6c71bf9db8120 240 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 8 235 35.313 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 SD28_RS04115 48dde6b0a1dd5f35c9b86c65f39d57d6 265 PANTHER PTHR40572 50 262 2.6E-36 T 23-04-2016 SD28_RS04115 48dde6b0a1dd5f35c9b86c65f39d57d6 265 SMART SM00047 116 244 1.3E-4 T 23-04-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 SD28_RS04115 48dde6b0a1dd5f35c9b86c65f39d57d6 265 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 127 254 3.2E-14 T 23-04-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 PANTHER PTHR18895:SF62 419 679 5.0E-80 T 23-04-2016 SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 SMART SM00981 57 155 6.5E-15 T 23-04-2016 IPR004114 THUMP domain GO:0003723 SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 6 717 28.195 T 23-04-2016 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 PANTHER PTHR18895 419 679 5.0E-80 T 23-04-2016 SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 Gene3D G3DSA:3.40.50.150 450 715 2.6E-68 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 SUPERFAMILY SSF53335 142 223 4.95E-33 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 SUPERFAMILY SSF53335 260 378 4.95E-33 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 Pfam PF02926 THUMP domain 32 156 2.8E-8 T 23-04-2016 IPR004114 THUMP domain GO:0003723 SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 515 638 2.1E-20 T 23-04-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 201 212 - T 23-04-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 PIRSF PIRSF037618 1 717 2.3E-277 T 23-04-2016 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 306 312 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 Gene3D G3DSA:3.40.50.150 257 371 2.1E-24 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 Gene3D G3DSA:3.40.50.150 152 220 2.1E-24 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 Pfam PF01170 Putative RNA methylase family UPF0020 163 375 5.3E-40 T 23-04-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS04390 774889f9f8c138eabf08bd7b807759e0 717 SUPERFAMILY SSF53335 413 716 2.55E-65 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS03935 886e1bca375fcd5df8c53c4344618c1b 70 Gene3D G3DSA:1.10.260.40 5 66 8.0E-12 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 SD28_RS03935 886e1bca375fcd5df8c53c4344618c1b 70 SMART SM00530 12 68 8.3E-7 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SD28_RS03935 886e1bca375fcd5df8c53c4344618c1b 70 Pfam PF01381 Helix-turn-helix 13 66 1.5E-9 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SD28_RS03935 886e1bca375fcd5df8c53c4344618c1b 70 SUPERFAMILY SSF47413 5 68 4.56E-13 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 SD28_RS05685 090ed2a3076fcaf61a76171a62514d39 403 PANTHER PTHR30454 3 400 2.8E-143 T 23-04-2016 SD28_RS05685 090ed2a3076fcaf61a76171a62514d39 403 SUPERFAMILY SSF56014 289 398 1.83E-6 T 23-04-2016 SD28_RS05685 090ed2a3076fcaf61a76171a62514d39 403 PIRSF PIRSF004640 1 401 4.2E-139 T 23-04-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 SD28_RS05685 090ed2a3076fcaf61a76171a62514d39 403 Pfam PF04551 GcpE protein 4 391 1.6E-119 T 23-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 SD28_RS05685 090ed2a3076fcaf61a76171a62514d39 403 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 1 395 28.126 T 23-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 SD28_RS05685 090ed2a3076fcaf61a76171a62514d39 403 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2 391 2.0E-123 T 23-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 SD28_RS02580 e8df66b5f837cc235180e007f825b0b2 177 SUPERFAMILY SSF82679 3 110 5.1E-34 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 SD28_RS02580 e8df66b5f837cc235180e007f825b0b2 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 3 175 2.0E-63 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 SD28_RS02580 e8df66b5f837cc235180e007f825b0b2 177 ProSitePatterns PS01014 Transcription termination factor nusG signature. 159 168 - T 23-04-2016 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site SD28_RS02580 e8df66b5f837cc235180e007f825b0b2 177 Pfam PF00467 KOW motif 125 157 2.9E-7 T 23-04-2016 IPR005824 KOW SD28_RS02580 e8df66b5f837cc235180e007f825b0b2 177 SUPERFAMILY SSF50104 122 175 2.01E-19 T 23-04-2016 IPR008991 Translation protein SH3-like domain SD28_RS02580 e8df66b5f837cc235180e007f825b0b2 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 1 176 22.591 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 SD28_RS02580 e8df66b5f837cc235180e007f825b0b2 177 Gene3D G3DSA:3.30.70.940 3 109 2.5E-40 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 SD28_RS02580 e8df66b5f837cc235180e007f825b0b2 177 SMART SM00738 3 108 3.0E-36 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 SD28_RS02580 e8df66b5f837cc235180e007f825b0b2 177 PRINTS PR00338 Transcription termination factor NUSG signature 152 168 5.8E-19 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 SD28_RS02580 e8df66b5f837cc235180e007f825b0b2 177 PRINTS PR00338 Transcription termination factor NUSG signature 134 149 5.8E-19 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 SD28_RS02580 e8df66b5f837cc235180e007f825b0b2 177 PRINTS PR00338 Transcription termination factor NUSG signature 55 67 5.8E-19 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 SD28_RS02580 e8df66b5f837cc235180e007f825b0b2 177 PANTHER PTHR30265 3 175 1.2E-69 T 23-04-2016 SD28_RS02580 e8df66b5f837cc235180e007f825b0b2 177 Gene3D G3DSA:2.30.30.30 116 175 7.0E-29 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 SD28_RS02580 e8df66b5f837cc235180e007f825b0b2 177 Pfam PF02357 Transcription termination factor nusG 3 105 2.9E-24 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 SD28_RS02580 e8df66b5f837cc235180e007f825b0b2 177 SMART SM00739 122 149 2.4E-4 T 23-04-2016 IPR005824 KOW SD28_RS04610 f76b450bbc41fec3a7402ebd60fe7742 401 SUPERFAMILY SSF56059 111 313 2.42E-17 T 23-04-2016 SD28_RS04610 f76b450bbc41fec3a7402ebd60fe7742 401 Pfam PF13535 ATP-grasp domain 151 293 7.2E-12 T 23-04-2016 SD28_RS04610 f76b450bbc41fec3a7402ebd60fe7742 401 Gene3D G3DSA:3.30.470.20 113 305 1.6E-8 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 Gene3D G3DSA:3.30.930.10 161 504 1.2E-126 T 23-04-2016 SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 Pfam PF01336 OB-fold nucleic acid binding domain 72 150 5.4E-17 T 23-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 PANTHER PTHR22594:SF4 1 510 8.1E-265 T 23-04-2016 SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 21 508 44.176 T 23-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 Pfam PF00152 tRNA synthetases class II (D, K and N) 166 505 3.6E-85 T 23-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 15 507 5.0E-211 T 23-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 Gene3D G3DSA:2.40.50.140 16 158 5.0E-44 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 SUPERFAMILY SSF55681 166 506 1.09E-124 T 23-04-2016 SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 PANTHER PTHR22594 1 510 8.1E-265 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 PIRSF PIRSF039101 1 510 1.2E-197 T 23-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 PRINTS PR00982 Lysyl-tRNA synthetase signature 390 406 3.59E-38 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 PRINTS PR00982 Lysyl-tRNA synthetase signature 266 283 3.59E-38 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 PRINTS PR00982 Lysyl-tRNA synthetase signature 219 235 3.59E-38 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 PRINTS PR00982 Lysyl-tRNA synthetase signature 203 213 3.59E-38 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 PRINTS PR00982 Lysyl-tRNA synthetase signature 248 261 3.59E-38 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 SD28_RS00905 576f790ffb8fc6b8f1dadf97c30690a2 510 SUPERFAMILY SSF50249 13 159 7.37E-39 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS03880 470edab9905ea247b6e4db94bdd2e500 456 Pfam PF01050 Mannose-6-phosphate isomerase 308 454 2.4E-52 T 23-04-2016 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 SD28_RS03880 470edab9905ea247b6e4db94bdd2e500 456 Gene3D G3DSA:3.90.550.10 3 257 2.4E-83 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS03880 470edab9905ea247b6e4db94bdd2e500 456 PANTHER PTHR12526:SF387 343 454 3.2E-69 T 23-04-2016 SD28_RS03880 470edab9905ea247b6e4db94bdd2e500 456 SUPERFAMILY SSF53448 3 265 5.41E-59 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS03880 470edab9905ea247b6e4db94bdd2e500 456 Pfam PF00483 Nucleotidyl transferase 3 269 9.0E-55 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 SD28_RS03880 470edab9905ea247b6e4db94bdd2e500 456 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2 454 5.0E-145 T 23-04-2016 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 SD28_RS03880 470edab9905ea247b6e4db94bdd2e500 456 SUPERFAMILY SSF51182 172 453 4.36E-48 T 23-04-2016 IPR011051 RmlC-like cupin domain SD28_RS03880 470edab9905ea247b6e4db94bdd2e500 456 PANTHER PTHR12526:SF387 147 275 3.2E-69 T 23-04-2016 SD28_RS03880 470edab9905ea247b6e4db94bdd2e500 456 PANTHER PTHR12526 343 454 3.2E-69 T 23-04-2016 SD28_RS03880 470edab9905ea247b6e4db94bdd2e500 456 PANTHER PTHR12526 147 275 3.2E-69 T 23-04-2016 SD28_RS03880 470edab9905ea247b6e4db94bdd2e500 456 Gene3D G3DSA:2.60.120.10 349 453 5.7E-30 T 23-04-2016 IPR014710 RmlC-like jelly roll fold SD28_RS05075 fd4d58411024c5f23b1557197178cb65 590 Pfam PF02867 Ribonucleotide reductase, barrel domain 93 402 3.6E-71 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SD28_RS05075 fd4d58411024c5f23b1557197178cb65 590 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 18 81 1.2E-7 T 23-04-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 SD28_RS05075 fd4d58411024c5f23b1557197178cb65 590 SUPERFAMILY SSF51998 485 555 3.66E-132 T 23-04-2016 SD28_RS05075 fd4d58411024c5f23b1557197178cb65 590 SUPERFAMILY SSF51998 91 454 3.66E-132 T 23-04-2016 SD28_RS05075 fd4d58411024c5f23b1557197178cb65 590 PRINTS PR01183 Ribonucleotide reductase large chain signature 271 282 1.2E-23 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SD28_RS05075 fd4d58411024c5f23b1557197178cb65 590 PRINTS PR01183 Ribonucleotide reductase large chain signature 160 179 1.2E-23 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SD28_RS05075 fd4d58411024c5f23b1557197178cb65 590 PRINTS PR01183 Ribonucleotide reductase large chain signature 344 366 1.2E-23 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SD28_RS05075 fd4d58411024c5f23b1557197178cb65 590 PRINTS PR01183 Ribonucleotide reductase large chain signature 405 432 1.2E-23 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SD28_RS05075 fd4d58411024c5f23b1557197178cb65 590 Gene3D G3DSA:3.20.70.20 56 450 2.7E-54 T 23-04-2016 SD28_RS05075 fd4d58411024c5f23b1557197178cb65 590 Gene3D G3DSA:3.20.70.20 511 556 2.7E-54 T 23-04-2016 SD28_RS05075 fd4d58411024c5f23b1557197178cb65 590 SUPERFAMILY SSF48168 6 82 1.7E-9 T 23-04-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 SD28_RS05075 fd4d58411024c5f23b1557197178cb65 590 PANTHER PTHR11573 11 554 1.4E-166 T 23-04-2016 SD28_RS01395 519f9b37576e72491d065a602f7f6e2c 130 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 6 120 2.5E-22 T 23-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 SD28_RS01395 519f9b37576e72491d065a602f7f6e2c 130 PANTHER PTHR28259 1 126 5.0E-31 T 23-04-2016 SD28_RS01395 519f9b37576e72491d065a602f7f6e2c 130 TIGRFAM TIGR00494 crcB: protein CrcB 6 124 6.2E-26 T 23-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 SD28_RS01395 519f9b37576e72491d065a602f7f6e2c 130 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 126 18.996 T 23-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 SD28_RS05775 177094bdbd58f2a3c0fd65748f3dd053 462 SUPERFAMILY SSF48024 11 119 9.55E-30 T 23-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 SD28_RS05775 177094bdbd58f2a3c0fd65748f3dd053 462 Gene3D G3DSA:3.40.50.300 173 447 7.1E-97 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05775 177094bdbd58f2a3c0fd65748f3dd053 462 Gene3D G3DSA:1.10.860.10 12 112 3.8E-28 T 23-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal SD28_RS05775 177094bdbd58f2a3c0fd65748f3dd053 462 Pfam PF03796 DnaB-like helicase C terminal domain 188 445 1.7E-109 T 23-04-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 SD28_RS05775 177094bdbd58f2a3c0fd65748f3dd053 462 SUPERFAMILY SSF52540 187 439 2.66E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05775 177094bdbd58f2a3c0fd65748f3dd053 462 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 11 447 5.9E-161 T 23-04-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 SD28_RS05775 177094bdbd58f2a3c0fd65748f3dd053 462 PANTHER PTHR30153 12 455 2.4E-181 T 23-04-2016 SD28_RS05775 177094bdbd58f2a3c0fd65748f3dd053 462 Pfam PF00772 DnaB-like helicase N terminal domain 11 111 4.9E-29 T 23-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 PANTHER PTHR23115:SF69 1 182 4.7E-234 T 23-04-2016 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 PANTHER PTHR23115:SF69 247 465 4.7E-234 T 23-04-2016 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 2 523 50.859 T 23-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 Pfam PF00009 Elongation factor Tu GTP binding domain 11 273 4.1E-48 T 23-04-2016 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 Pfam PF16658 Class II release factor RF3, C-terminal domain 383 510 6.7E-45 T 23-04-2016 IPR032090 Peptide chain release factor 3, C-terminal SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 Gene3D G3DSA:2.40.30.10 289 390 1.5E-24 T 23-04-2016 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 Gene3D G3DSA:3.40.50.300 7 278 1.1E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 PRINTS PR00315 GTP-binding elongation factor signature 83 93 1.3E-11 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 PRINTS PR00315 GTP-binding elongation factor signature 99 110 1.3E-11 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 PRINTS PR00315 GTP-binding elongation factor signature 135 144 1.3E-11 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 PRINTS PR00315 GTP-binding elongation factor signature 63 71 1.3E-11 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 PRINTS PR00315 GTP-binding elongation factor signature 13 26 1.3E-11 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 PANTHER PTHR23115 1 182 4.7E-234 T 23-04-2016 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 PANTHER PTHR23115 247 465 4.7E-234 T 23-04-2016 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 SUPERFAMILY SSF50447 258 389 7.54E-28 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 Pfam PF03144 Elongation factor Tu domain 2 310 375 1.3E-10 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 154 2.9E-18 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 SUPERFAMILY SSF54980 389 464 3.31E-15 T 23-04-2016 IPR009022 Elongation factor G, III-V domain SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 Gene3D G3DSA:3.30.70.870 391 459 2.7E-12 T 23-04-2016 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 1 525 2.7E-261 T 23-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 SD28_RS00355 d3fdcb4901edfea5bf3d7aabe000f69b 525 SUPERFAMILY SSF52540 8 273 4.61E-86 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02350 8dcea067429865db4ec470453e77d4e7 66 SUPERFAMILY SSF46561 7 65 3.01E-17 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02350 8dcea067429865db4ec470453e77d4e7 66 ProSitePatterns PS00579 Ribosomal protein L29 signature. 43 57 - T 23-04-2016 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02350 8dcea067429865db4ec470453e77d4e7 66 PANTHER PTHR10916:SF0 7 64 1.4E-17 T 23-04-2016 SD28_RS02350 8dcea067429865db4ec470453e77d4e7 66 Gene3D G3DSA:1.10.287.310 7 64 6.0E-21 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02350 8dcea067429865db4ec470453e77d4e7 66 Pfam PF00831 Ribosomal L29 protein 8 64 1.4E-19 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02350 8dcea067429865db4ec470453e77d4e7 66 TIGRFAM TIGR00012 L29: ribosomal protein uL29 11 64 1.8E-18 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02350 8dcea067429865db4ec470453e77d4e7 66 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 3 64 16.122 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02350 8dcea067429865db4ec470453e77d4e7 66 PANTHER PTHR10916 7 64 1.4E-17 T 23-04-2016 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 Gene3D G3DSA:3.40.50.620 9 227 2.4E-82 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 PANTHER PTHR11766:SF1 4 398 9.4E-215 T 23-04-2016 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 2 397 46.636 T 23-04-2016 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 PANTHER PTHR11766 4 398 9.4E-215 T 23-04-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 SUPERFAMILY SSF52374 6 316 9.3E-95 T 23-04-2016 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 Pfam PF01479 S4 domain 340 374 3.7E-8 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 SUPERFAMILY SSF55174 320 397 1.13E-18 T 23-04-2016 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 Gene3D G3DSA:3.10.290.10 326 396 4.1E-23 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 Gene3D G3DSA:1.10.240.10 228 325 2.7E-36 T 23-04-2016 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 7 397 4.5E-124 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 SMART SM00363 336 396 1.7E-5 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 Pfam PF00579 tRNA synthetases class I (W and Y) 30 317 2.4E-77 T 23-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 161 176 1.1E-25 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 211 223 1.1E-25 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 1.1E-25 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 SD28_RS04375 75e7c5f4eee5adf360e3cc7fc70782f2 398 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 178 200 1.1E-25 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 SD28_RS01190 f257eaaa754b65cedb9bd75200e1360d 508 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 82 506 5.9E-147 T 23-04-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath SD28_RS01190 f257eaaa754b65cedb9bd75200e1360d 508 PANTHER PTHR35565 2 506 2.3E-143 T 23-04-2016 SD28_RS01190 f257eaaa754b65cedb9bd75200e1360d 508 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 39 506 1.3E-140 T 23-04-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath SD28_RS07610 7d8eac15c1c55b8b34c8e947fd771561 434 Gene3D G3DSA:3.65.10.10 23 225 1.8E-36 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 SD28_RS07610 7d8eac15c1c55b8b34c8e947fd771561 434 PANTHER PTHR21090 17 422 1.8E-85 T 23-04-2016 SD28_RS07610 7d8eac15c1c55b8b34c8e947fd771561 434 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 17 421 9.7E-58 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 SD28_RS07610 7d8eac15c1c55b8b34c8e947fd771561 434 PANTHER PTHR21090:SF4 17 422 1.8E-85 T 23-04-2016 SD28_RS07610 7d8eac15c1c55b8b34c8e947fd771561 434 SUPERFAMILY SSF55205 16 424 8.99E-87 T 23-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 SD28_RS07610 7d8eac15c1c55b8b34c8e947fd771561 434 Gene3D G3DSA:3.65.10.10 226 428 3.4E-37 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 SD28_RS00520 1f80b201175c29e3f9c59d51d44cf654 380 PANTHER PTHR13932:SF7 8 380 8.3E-146 T 23-04-2016 SD28_RS00520 1f80b201175c29e3f9c59d51d44cf654 380 PANTHER PTHR13932 8 380 8.3E-146 T 23-04-2016 SD28_RS00520 1f80b201175c29e3f9c59d51d44cf654 380 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 9 363 8.5E-114 T 23-04-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.- SD28_RS00520 1f80b201175c29e3f9c59d51d44cf654 380 Pfam PF06969 HemN C-terminal domain 307 369 6.7E-10 T 23-04-2016 IPR010723 HemN, C-terminal SD28_RS00520 1f80b201175c29e3f9c59d51d44cf654 380 Pfam PF04055 Radical SAM superfamily 12 177 3.2E-18 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 SD28_RS00520 1f80b201175c29e3f9c59d51d44cf654 380 Gene3D G3DSA:3.80.30.20 8 238 5.0E-28 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe SD28_RS00520 1f80b201175c29e3f9c59d51d44cf654 380 SUPERFAMILY SSF102114 5 379 4.32E-95 T 23-04-2016 SD28_RS00520 1f80b201175c29e3f9c59d51d44cf654 380 SMART SM00729 7 227 3.3E-41 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 SD28_RS06605 6b73d8ec7eda8a40af6dc09b2fecb6ee 341 SUPERFAMILY SSF53756 51 334 1.78E-62 T 23-04-2016 SD28_RS06605 6b73d8ec7eda8a40af6dc09b2fecb6ee 341 PANTHER PTHR12526 125 334 7.3E-50 T 23-04-2016 SD28_RS06605 6b73d8ec7eda8a40af6dc09b2fecb6ee 341 Pfam PF00534 Glycosyl transferases group 1 148 310 1.1E-36 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 SD28_RS06605 6b73d8ec7eda8a40af6dc09b2fecb6ee 341 Gene3D G3DSA:3.40.50.2000 149 309 4.3E-26 T 23-04-2016 SD28_RS05530 a0acfb08012d2480e6d85e0467c1709f 216 PRINTS PR00094 Adenylate kinase signature 156 171 6.6E-30 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 SD28_RS05530 a0acfb08012d2480e6d85e0467c1709f 216 PRINTS PR00094 Adenylate kinase signature 173 187 6.6E-30 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 SD28_RS05530 a0acfb08012d2480e6d85e0467c1709f 216 PRINTS PR00094 Adenylate kinase signature 4 17 6.6E-30 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 SD28_RS05530 a0acfb08012d2480e6d85e0467c1709f 216 PRINTS PR00094 Adenylate kinase signature 81 97 6.6E-30 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 SD28_RS05530 a0acfb08012d2480e6d85e0467c1709f 216 PRINTS PR00094 Adenylate kinase signature 32 46 6.6E-30 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 SD28_RS05530 a0acfb08012d2480e6d85e0467c1709f 216 PANTHER PTHR23359 1 216 3.2E-99 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 SD28_RS05530 a0acfb08012d2480e6d85e0467c1709f 216 Gene3D G3DSA:3.40.50.300 1 215 1.5E-78 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05530 a0acfb08012d2480e6d85e0467c1709f 216 TIGRFAM TIGR01351 adk: adenylate kinase 2 214 2.1E-71 T 23-04-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 SD28_RS05530 a0acfb08012d2480e6d85e0467c1709f 216 SUPERFAMILY SSF52540 1 215 2.28E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05530 a0acfb08012d2480e6d85e0467c1709f 216 Pfam PF05191 Adenylate kinase, active site lid 123 158 3.8E-15 T 23-04-2016 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 SD28_RS05530 a0acfb08012d2480e6d85e0467c1709f 216 Pfam PF00406 Adenylate kinase 5 185 5.3E-54 T 23-04-2016 SD28_RS05530 a0acfb08012d2480e6d85e0467c1709f 216 Hamap MF_00235 Adenylate kinase [adk]. 1 216 50.585 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 PANTHER PTHR11405 1 303 9.2E-115 T 23-04-2016 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 SUPERFAMILY SSF53671 3 304 3.27E-83 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 50 57 - T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 5 146 7.0E-45 T 23-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 154 302 1.6E-22 T 23-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 Gene3D G3DSA:3.40.50.1370 3 141 6.3E-52 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 Gene3D G3DSA:3.40.50.1370 142 290 5.1E-44 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 5 303 1.4E-99 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 PANTHER PTHR11405:SF39 1 303 9.2E-115 T 23-04-2016 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 134 145 1.3E-19 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 269 292 1.3E-19 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 50 69 1.3E-19 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 259 268 1.3E-19 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 263 268 1.2E-34 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 225 234 1.2E-34 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 40 62 1.2E-34 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 79 88 1.2E-34 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 285 299 1.2E-34 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 SD28_RS01355 05e8827d6c4e5590c810986d53404f28 306 PRINTS PR00101 Aspartate carbamoyltransferase signature 133 150 1.2E-34 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 SD28_RS06600 0a0fa8060e74bd344cb675c967c81733 220 Gene3D G3DSA:3.40.30.10 14 78 5.6E-20 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS06600 0a0fa8060e74bd344cb675c967c81733 220 Pfam PF13417 Glutathione S-transferase, N-terminal domain 10 77 1.3E-9 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 SD28_RS06600 0a0fa8060e74bd344cb675c967c81733 220 Gene3D G3DSA:1.20.1050.10 98 220 5.7E-30 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like SD28_RS06600 0a0fa8060e74bd344cb675c967c81733 220 Pfam PF04399 Glutaredoxin 2, C terminal domain 92 220 4.8E-29 T 23-04-2016 IPR007494 Glutaredoxin 2, C-terminal SD28_RS06600 0a0fa8060e74bd344cb675c967c81733 220 SUPERFAMILY SSF52833 8 78 1.7E-15 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS06600 0a0fa8060e74bd344cb675c967c81733 220 SUPERFAMILY SSF47616 83 220 1.67E-31 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like SD28_RS06600 0a0fa8060e74bd344cb675c967c81733 220 ProSitePatterns PS00195 Glutaredoxin active site. 9 24 - T 23-04-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 SD28_RS00135 f8342e03c1a5fed8923061074169e13d 235 ProSitePatterns PS01277 Ribonuclease PH signature. 116 129 - T 23-04-2016 IPR018336 Ribonuclease PH, conserved site SD28_RS00135 f8342e03c1a5fed8923061074169e13d 235 Hamap MF_00564 Ribonuclease PH [rph]. 1 235 44.258 T 23-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 SD28_RS00135 f8342e03c1a5fed8923061074169e13d 235 SUPERFAMILY SSF55666 156 232 1.3E-24 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 SD28_RS00135 f8342e03c1a5fed8923061074169e13d 235 Gene3D G3DSA:3.30.230.70 5 232 1.1E-32 T 23-04-2016 IPR027408 PNPase/RNase PH domain SD28_RS00135 f8342e03c1a5fed8923061074169e13d 235 SUPERFAMILY SSF54211 1 183 3.19E-44 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS00135 f8342e03c1a5fed8923061074169e13d 235 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 2.6E-25 T 23-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 SD28_RS00135 f8342e03c1a5fed8923061074169e13d 235 Pfam PF03725 3' exoribonuclease family, domain 2 161 226 2.8E-13 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 SD28_RS00135 f8342e03c1a5fed8923061074169e13d 235 PANTHER PTHR11953:SF0 1 233 4.6E-76 T 23-04-2016 SD28_RS00135 f8342e03c1a5fed8923061074169e13d 235 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 232 3.2E-110 T 23-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 SD28_RS00135 f8342e03c1a5fed8923061074169e13d 235 PANTHER PTHR11953 1 233 4.6E-76 T 23-04-2016 SD28_RS07040 b58464a53960f830745e311bf2099968 154 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 154 60.452 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 SD28_RS07040 b58464a53960f830745e311bf2099968 154 Gene3D G3DSA:3.40.50.9100 1 142 9.1E-61 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 SD28_RS07040 b58464a53960f830745e311bf2099968 154 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 3 138 2.0E-57 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 SD28_RS07040 b58464a53960f830745e311bf2099968 154 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 3 139 7.8E-58 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 SD28_RS07040 b58464a53960f830745e311bf2099968 154 PIRSF PIRSF001399 1 143 7.7E-58 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 SD28_RS07040 b58464a53960f830745e311bf2099968 154 Pfam PF01220 Dehydroquinase class II 3 134 8.9E-58 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 SD28_RS07040 b58464a53960f830745e311bf2099968 154 ProSitePatterns PS01029 Dehydroquinase class II signature. 6 23 - T 23-04-2016 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 SD28_RS07040 b58464a53960f830745e311bf2099968 154 PANTHER PTHR21272 1 146 7.5E-75 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 SD28_RS07040 b58464a53960f830745e311bf2099968 154 SUPERFAMILY SSF52304 1 144 1.16E-57 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 SD28_RS07120 7530f5dceb6ee10beae2a3c7649dde43 704 Gene3D G3DSA:3.40.50.300 462 693 2.6E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07120 7530f5dceb6ee10beae2a3c7649dde43 704 ProSitePatterns PS00211 ABC transporters family signature. 600 614 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS07120 7530f5dceb6ee10beae2a3c7649dde43 704 PANTHER PTHR24221 129 698 1.8E-269 T 23-04-2016 SD28_RS07120 7530f5dceb6ee10beae2a3c7649dde43 704 Pfam PF03412 Peptidase C39 family 5 120 1.5E-10 T 23-04-2016 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 SD28_RS07120 7530f5dceb6ee10beae2a3c7649dde43 704 Gene3D G3DSA:1.20.1560.10 133 443 8.8E-83 T 23-04-2016 SD28_RS07120 7530f5dceb6ee10beae2a3c7649dde43 704 TIGRFAM TIGR01846 type_I_sec_HlyB: type I secretion system ATPase 6 698 1.3E-289 T 23-04-2016 IPR010132 ATPase, type I secretion system, HlyB GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 SD28_RS07120 7530f5dceb6ee10beae2a3c7649dde43 704 Pfam PF00005 ABC transporter 479 628 3.7E-36 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS07120 7530f5dceb6ee10beae2a3c7649dde43 704 PANTHER PTHR24221:SF246 129 698 1.8E-269 T 23-04-2016 SD28_RS07120 7530f5dceb6ee10beae2a3c7649dde43 704 SMART SM00382 488 690 1.9E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS07120 7530f5dceb6ee10beae2a3c7649dde43 704 Gene3D G3DSA:3.90.70.10 7 118 1.7E-20 T 23-04-2016 SD28_RS07120 7530f5dceb6ee10beae2a3c7649dde43 704 SUPERFAMILY SSF90123 133 445 2.22E-73 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 SD28_RS07120 7530f5dceb6ee10beae2a3c7649dde43 704 SUPERFAMILY SSF52540 454 699 4.8E-90 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07120 7530f5dceb6ee10beae2a3c7649dde43 704 Pfam PF00664 ABC transporter transmembrane region 150 414 1.4E-54 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 SD28_RS01990 732b0c6d23b44115c586a6770c5393ee 424 PANTHER PTHR11780 4 417 3.8E-220 T 23-04-2016 SD28_RS01990 732b0c6d23b44115c586a6770c5393ee 424 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 341 352 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 SD28_RS01990 732b0c6d23b44115c586a6770c5393ee 424 SUPERFAMILY SSF140490 324 417 1.57E-36 T 23-04-2016 SD28_RS01990 732b0c6d23b44115c586a6770c5393ee 424 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 48 218 3.6E-44 T 23-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain SD28_RS01990 732b0c6d23b44115c586a6770c5393ee 424 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 7 414 5.5E-188 T 23-04-2016 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 SD28_RS01990 732b0c6d23b44115c586a6770c5393ee 424 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 331 410 2.3E-30 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 SD28_RS01990 732b0c6d23b44115c586a6770c5393ee 424 PANTHER PTHR11780:SF10 4 417 3.8E-220 T 23-04-2016 SD28_RS01990 732b0c6d23b44115c586a6770c5393ee 424 Pfam PF10531 SLBB domain 242 290 3.9E-10 T 23-04-2016 IPR019554 Soluble ligand binding domain SD28_RS01990 732b0c6d23b44115c586a6770c5393ee 424 SUPERFAMILY SSF142984 240 323 1.83E-22 T 23-04-2016 SD28_RS01990 732b0c6d23b44115c586a6770c5393ee 424 SUPERFAMILY SSF142019 5 239 1.44E-83 T 23-04-2016 SD28_RS01990 732b0c6d23b44115c586a6770c5393ee 424 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 166 181 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 SD28_RS01990 732b0c6d23b44115c586a6770c5393ee 424 SMART SM00928 328 373 6.9E-24 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 SD28_RS04735 bafc9696340e4693df81b605e1c04ab9 352 SUPERFAMILY SSF52540 1 351 7.84E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04735 bafc9696340e4693df81b605e1c04ab9 352 ProSitePatterns PS00618 RecF protein signature 2. 297 315 - T 23-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 SD28_RS04735 bafc9696340e4693df81b605e1c04ab9 352 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 342 4.5E-91 T 23-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 SD28_RS04735 bafc9696340e4693df81b605e1c04ab9 352 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 352 75.187 T 23-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 SD28_RS04735 bafc9696340e4693df81b605e1c04ab9 352 PANTHER PTHR32182 1 351 9.6E-39 T 23-04-2016 SD28_RS04735 bafc9696340e4693df81b605e1c04ab9 352 SMART SM00382 22 352 0.008 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS04735 bafc9696340e4693df81b605e1c04ab9 352 PANTHER PTHR32182:SF0 1 351 9.6E-39 T 23-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 SD28_RS04735 bafc9696340e4693df81b605e1c04ab9 352 Gene3D G3DSA:3.40.50.300 1 137 7.3E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04735 bafc9696340e4693df81b605e1c04ab9 352 Gene3D G3DSA:3.40.50.300 189 350 7.3E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04735 bafc9696340e4693df81b605e1c04ab9 352 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 336 1.3E-30 T 23-04-2016 IPR003395 RecF/RecN/SMC, N-terminal SD28_RS04435 5b2a59596965cf896dbe05cb0bec2de2 586 PANTHER PTHR11236 49 455 6.8E-112 T 23-04-2016 SD28_RS04435 5b2a59596965cf896dbe05cb0bec2de2 586 Gene3D G3DSA:3.60.120.10 20 373 5.0E-98 T 23-04-2016 IPR005801 ADC synthase GO:0009058 SD28_RS04435 5b2a59596965cf896dbe05cb0bec2de2 586 Pfam PF00425 chorismate binding enzyme 113 366 7.6E-80 T 23-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal SD28_RS04435 5b2a59596965cf896dbe05cb0bec2de2 586 SUPERFAMILY SSF56322 21 373 5.23E-92 T 23-04-2016 IPR005801 ADC synthase GO:0009058 SD28_RS04435 5b2a59596965cf896dbe05cb0bec2de2 586 Gene3D G3DSA:3.30.470.10 378 449 7.3E-5 T 23-04-2016 SD28_RS04435 5b2a59596965cf896dbe05cb0bec2de2 586 PRINTS PR00095 Anthranilate synthase component I signature 214 227 2.3E-8 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 SD28_RS04435 5b2a59596965cf896dbe05cb0bec2de2 586 PRINTS PR00095 Anthranilate synthase component I signature 308 322 2.3E-8 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 SD28_RS04435 5b2a59596965cf896dbe05cb0bec2de2 586 PRINTS PR00095 Anthranilate synthase component I signature 228 241 2.3E-8 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 SD28_RS04435 5b2a59596965cf896dbe05cb0bec2de2 586 PRINTS PR00095 Anthranilate synthase component I signature 323 337 2.3E-8 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 SD28_RS04435 5b2a59596965cf896dbe05cb0bec2de2 586 SUPERFAMILY SSF56752 348 582 1.29E-30 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 SD28_RS04435 5b2a59596965cf896dbe05cb0bec2de2 586 Pfam PF01063 Amino-transferase class IV 381 581 2.3E-24 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 SD28_RS04435 5b2a59596965cf896dbe05cb0bec2de2 586 PANTHER PTHR11236:SF18 49 455 6.8E-112 T 23-04-2016 SD28_RS04435 5b2a59596965cf896dbe05cb0bec2de2 586 Gene3D G3DSA:3.20.10.10 464 579 8.2E-24 T 23-04-2016 SD28_RS01265 391e6789a845ad325dfbce932feaf92d 246 PANTHER PTHR10434:SF11 15 237 3.4E-32 T 23-04-2016 SD28_RS01265 391e6789a845ad325dfbce932feaf92d 246 SMART SM00563 80 195 2.0E-22 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 SD28_RS01265 391e6789a845ad325dfbce932feaf92d 246 PANTHER PTHR10434 15 237 3.4E-32 T 23-04-2016 SD28_RS01265 391e6789a845ad325dfbce932feaf92d 246 Gene3D G3DSA:3.40.1130.10 70 228 4.1E-16 T 23-04-2016 SD28_RS01265 391e6789a845ad325dfbce932feaf92d 246 Pfam PF01553 Acyltransferase 67 192 7.4E-20 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 SD28_RS01265 391e6789a845ad325dfbce932feaf92d 246 SUPERFAMILY SSF69593 20 242 7.06E-37 T 23-04-2016 SD28_RS07180 c403038173ad06bc97a152c7aafd2763 104 Gene3D G3DSA:3.30.1420.10 4 32 8.7E-5 T 23-04-2016 SD28_RS07180 c403038173ad06bc97a152c7aafd2763 104 SUPERFAMILY SSF69721 3 104 2.88E-28 T 23-04-2016 IPR025526 DsrC-like domain SD28_RS07180 c403038173ad06bc97a152c7aafd2763 104 PANTHER PTHR37010 6 104 5.9E-30 T 23-04-2016 SD28_RS07180 c403038173ad06bc97a152c7aafd2763 104 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 3 104 6.9E-34 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE SD28_RS07180 c403038173ad06bc97a152c7aafd2763 104 Gene3D G3DSA:1.10.10.370 34 104 7.6E-27 T 23-04-2016 SD28_RS07180 c403038173ad06bc97a152c7aafd2763 104 PANTHER PTHR37010:SF1 6 104 5.9E-30 T 23-04-2016 SD28_RS07180 c403038173ad06bc97a152c7aafd2763 104 Pfam PF04358 DsrC like protein 3 104 4.0E-32 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE SD28_RS07180 c403038173ad06bc97a152c7aafd2763 104 PIRSF PIRSF006223 1 104 7.0E-30 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE SD28_RS07440 103b7330ab54fa81dc23605953ed6d6c 95 PANTHER PTHR10772 1 95 3.2E-45 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SD28_RS07440 103b7330ab54fa81dc23605953ed6d6c 95 SMART SM00883 2 94 3.7E-56 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SD28_RS07440 103b7330ab54fa81dc23605953ed6d6c 95 PRINTS PR00297 10kDa chaperonin signature 60 72 2.0E-30 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SD28_RS07440 103b7330ab54fa81dc23605953ed6d6c 95 PRINTS PR00297 10kDa chaperonin signature 25 46 2.0E-30 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SD28_RS07440 103b7330ab54fa81dc23605953ed6d6c 95 PRINTS PR00297 10kDa chaperonin signature 81 94 2.0E-30 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SD28_RS07440 103b7330ab54fa81dc23605953ed6d6c 95 PRINTS PR00297 10kDa chaperonin signature 3 18 2.0E-30 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SD28_RS07440 103b7330ab54fa81dc23605953ed6d6c 95 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 23-04-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 SD28_RS07440 103b7330ab54fa81dc23605953ed6d6c 95 SUPERFAMILY SSF50129 1 95 6.04E-34 T 23-04-2016 IPR011032 GroES-like SD28_RS07440 103b7330ab54fa81dc23605953ed6d6c 95 Pfam PF00166 Chaperonin 10 Kd subunit 2 94 1.3E-34 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SD28_RS07440 103b7330ab54fa81dc23605953ed6d6c 95 Gene3D G3DSA:2.30.33.40 1 95 1.9E-38 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SD28_RS07440 103b7330ab54fa81dc23605953ed6d6c 95 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 25.872 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 Gene3D G3DSA:3.40.50.300 178 365 5.5E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 Gene3D G3DSA:3.40.50.300 5 160 1.1E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 SUPERFAMILY SSF52540 6 168 6.79E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 PANTHER PTHR11649 6 442 1.4E-135 T 23-04-2016 SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 SUPERFAMILY SSF52540 181 446 1.69E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 PIRSF PIRSF006485 1 448 1.5E-173 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 6 440 3.7E-171 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 157 2.7E-23 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 188 325 2.6E-22 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 Pfam PF01926 50S ribosome-binding GTPase 187 303 4.3E-21 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 Pfam PF01926 50S ribosome-binding GTPase 6 119 1.3E-23 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 2.0E-5 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.0E-5 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 360 440 1.3E-24 T 23-04-2016 IPR032859 GTPase Der, C-terminal KH-domain-like SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 Gene3D G3DSA:3.30.300.20 366 442 1.3E-23 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 PANTHER PTHR11649:SF5 6 442 1.4E-135 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 SD28_RS07615 eca8212a0f652a8a65e2164b658dd295 465 Hamap MF_00195 GTPase Der [der]. 2 443 36.679 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 SD28_RS00800 b8ea04ed06e453f1ffc1ff278ba89cdf 282 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 2 281 16.14 T 23-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 SD28_RS00800 b8ea04ed06e453f1ffc1ff278ba89cdf 282 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 60 82 - T 23-04-2016 IPR030470 UbiA prenyltransferase conserved site SD28_RS00800 b8ea04ed06e453f1ffc1ff278ba89cdf 282 Pfam PF01040 UbiA prenyltransferase family 19 271 1.7E-51 T 23-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 SD28_RS00800 b8ea04ed06e453f1ffc1ff278ba89cdf 282 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 4 280 3.5E-81 T 23-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 SD28_RS00800 b8ea04ed06e453f1ffc1ff278ba89cdf 282 PANTHER PTHR11048 1 277 2.8E-83 T 23-04-2016 SD28_RS00800 b8ea04ed06e453f1ffc1ff278ba89cdf 282 PANTHER PTHR11048:SF20 1 277 2.8E-83 T 23-04-2016 SD28_RS01985 69cbe233bb93a017862fd7e0eec47d59 162 SUPERFAMILY SSF52833 9 161 1.57E-48 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS01985 69cbe233bb93a017862fd7e0eec47d59 162 PANTHER PTHR10371 9 162 2.0E-64 T 23-04-2016 SD28_RS01985 69cbe233bb93a017862fd7e0eec47d59 162 PIRSF PIRSF000216 1 162 5.3E-57 T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 SD28_RS01985 69cbe233bb93a017862fd7e0eec47d59 162 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 15 162 1.3E-52 T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 SD28_RS01985 69cbe233bb93a017862fd7e0eec47d59 162 Gene3D G3DSA:3.40.30.10 82 160 5.6E-11 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS01985 69cbe233bb93a017862fd7e0eec47d59 162 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 16 161 1.9E-48 T 23-04-2016 SD28_RS02930 49d61d09cb17a88e598b68153e53bfc7 825 SUPERFAMILY SSF56300 276 342 1.59E-7 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like SD28_RS02930 49d61d09cb17a88e598b68153e53bfc7 825 SUPERFAMILY SSF56300 106 160 1.59E-7 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like SD28_RS02930 49d61d09cb17a88e598b68153e53bfc7 825 SUPERFAMILY SSF56300 42 65 1.59E-7 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like SD28_RS02930 49d61d09cb17a88e598b68153e53bfc7 825 SUPERFAMILY SSF56300 203 249 1.59E-7 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like SD28_RS02930 49d61d09cb17a88e598b68153e53bfc7 825 PANTHER PTHR24006:SF364 680 823 2.1E-20 T 23-04-2016 SD28_RS02930 49d61d09cb17a88e598b68153e53bfc7 825 PANTHER PTHR24006:SF364 541 659 2.1E-20 T 23-04-2016 SD28_RS02930 49d61d09cb17a88e598b68153e53bfc7 825 PANTHER PTHR24006 680 823 2.1E-20 T 23-04-2016 SD28_RS02930 49d61d09cb17a88e598b68153e53bfc7 825 PANTHER PTHR24006 541 659 2.1E-20 T 23-04-2016 SD28_RS02930 49d61d09cb17a88e598b68153e53bfc7 825 Pfam PF00443 Ubiquitin carboxyl-terminal hydrolase 594 820 2.1E-13 T 23-04-2016 IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase GO:0016579|GO:0036459 SD28_RS02930 49d61d09cb17a88e598b68153e53bfc7 825 Gene3D G3DSA:3.60.21.10 105 321 3.6E-7 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like SD28_RS02930 49d61d09cb17a88e598b68153e53bfc7 825 Gene3D G3DSA:3.60.21.10 34 65 3.6E-7 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like SD28_RS02930 49d61d09cb17a88e598b68153e53bfc7 825 SUPERFAMILY SSF54001 541 822 5.49E-36 T 23-04-2016 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR00418 DNA topoisomerase II family signature 560 576 1.8E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR00418 DNA topoisomerase II family signature 497 514 1.8E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR00418 DNA topoisomerase II family signature 265 278 1.8E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR00418 DNA topoisomerase II family signature 108 122 1.8E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR00418 DNA topoisomerase II family signature 65 78 1.8E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR00418 DNA topoisomerase II family signature 30 45 1.8E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR00418 DNA topoisomerase II family signature 517 529 1.8E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR00418 DNA topoisomerase II family signature 479 495 1.8E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR00418 DNA topoisomerase II family signature 414 428 1.8E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 SUPERFAMILY SSF56719 391 625 1.26E-76 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 169 1.8E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PANTHER PTHR10169:SF45 2 622 0.0 T 23-04-2016 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 Pfam PF16898 C-terminal associated domain of TOPRIM 533 621 1.3E-6 T 23-04-2016 IPR031660 C-terminal associated domain of TOPRIM SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 2 623 7.8E-257 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PANTHER PTHR10169 2 622 0.0 T 23-04-2016 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 SMART SM00387 26 172 2.0E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 ProSitePatterns PS00177 DNA topoisomerase II signature. 416 424 - T 23-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 1 626 43.52 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 557 618 2.0E-21 T 23-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 Pfam PF01751 Toprim domain 413 523 1.7E-15 T 23-04-2016 IPR006171 Toprim domain SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 Gene3D G3DSA:3.30.230.10 217 384 1.9E-41 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR01098 Topoisomerase IV subunit B signature 503 519 1.1E-62 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR01098 Topoisomerase IV subunit B signature 25 38 1.1E-62 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR01098 Topoisomerase IV subunit B signature 293 309 1.1E-62 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR01098 Topoisomerase IV subunit B signature 469 481 1.1E-62 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR01098 Topoisomerase IV subunit B signature 361 386 1.1E-62 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR01098 Topoisomerase IV subunit B signature 448 469 1.1E-62 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR01098 Topoisomerase IV subunit B signature 537 559 1.1E-62 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR01098 Topoisomerase IV subunit B signature 337 360 1.1E-62 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR01098 Topoisomerase IV subunit B signature 237 260 1.1E-62 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR01098 Topoisomerase IV subunit B signature 148 163 1.1E-62 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR01098 Topoisomerase IV subunit B signature 134 148 1.1E-62 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR01098 Topoisomerase IV subunit B signature 191 212 1.1E-62 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR01098 Topoisomerase IV subunit B signature 310 325 1.1E-62 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 PRINTS PR01098 Topoisomerase IV subunit B signature 173 190 1.1E-62 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 Gene3D G3DSA:3.30.565.10 14 213 2.6E-76 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 Pfam PF00204 DNA gyrase B 217 384 5.3E-38 T 23-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 Gene3D G3DSA:3.40.50.670 398 609 1.7E-75 T 23-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 SUPERFAMILY SSF55874 3 214 6.81E-66 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 SMART SM00433 33 622 3.1E-213 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS00325 2dbe0aee6916617ef87e3bd5e0d2abd6 627 SUPERFAMILY SSF54211 217 381 2.47E-40 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS05390 226ca1f96ae729defa97213278b22348 321 TIGRFAM TIGR00874 talAB: transaldolase 5 319 3.6E-122 T 23-04-2016 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 SD28_RS05390 226ca1f96ae729defa97213278b22348 321 SUPERFAMILY SSF51569 4 319 1.57E-99 T 23-04-2016 SD28_RS05390 226ca1f96ae729defa97213278b22348 321 Pfam PF00923 Transaldolase 15 315 9.9E-91 T 23-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 SD28_RS05390 226ca1f96ae729defa97213278b22348 321 PANTHER PTHR10683 1 319 2.1E-141 T 23-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 SD28_RS05390 226ca1f96ae729defa97213278b22348 321 ProSitePatterns PS01054 Transaldolase signature 1. 32 40 - T 23-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 SD28_RS05390 226ca1f96ae729defa97213278b22348 321 Gene3D G3DSA:3.20.20.70 4 319 2.0E-112 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS05390 226ca1f96ae729defa97213278b22348 321 PANTHER PTHR10683:SF18 1 319 2.1E-141 T 23-04-2016 SD28_RS05390 226ca1f96ae729defa97213278b22348 321 ProSitePatterns PS00958 Transaldolase active site. 132 149 - T 23-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 SD28_RS03445 f5efe675cf27f717a30baec934dcb6b5 112 Hamap MF_00910 Cell division protein FtsL [ftsL]. 24 106 12.458 T 23-04-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 SD28_RS03445 f5efe675cf27f717a30baec934dcb6b5 112 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 27 101 4.5E-13 T 23-04-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 SD28_RS03445 f5efe675cf27f717a30baec934dcb6b5 112 Pfam PF04999 Cell division protein FtsL 27 104 4.0E-14 T 23-04-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 341 529 3.0E-52 T 23-04-2016 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: REACT_71 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 Gene3D G3DSA:3.40.50.620 213 263 7.1E-42 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 Gene3D G3DSA:3.40.50.620 29 97 7.1E-42 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 SUPERFAMILY SSF52374 12 338 1.13E-99 T 23-04-2016 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 Gene3D G3DSA:1.10.1160.10 264 339 5.8E-36 T 23-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 Gene3D G3DSA:2.40.240.10 462 547 1.6E-31 T 23-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 29 337 6.5E-110 T 23-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 35 46 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 Gene3D G3DSA:3.90.800.10 102 210 2.1E-47 T 23-04-2016 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 30 548 3.9E-222 T 23-04-2016 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 Gene3D G3DSA:2.40.240.10 349 461 1.3E-36 T 23-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 PANTHER PTHR11451:SF29 268 547 7.5E-203 T 23-04-2016 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 PANTHER PTHR11451:SF29 10 248 7.5E-203 T 23-04-2016 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 SUPERFAMILY SSF50715 341 548 7.32E-62 T 23-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 550 48.867 T 23-04-2016 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 PRINTS PR00987 Glutamyl-tRNA synthetase signature 61 74 6.2E-10 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 PRINTS PR00987 Glutamyl-tRNA synthetase signature 46 57 6.2E-10 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 PRINTS PR00987 Glutamyl-tRNA synthetase signature 32 44 6.2E-10 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 PRINTS PR00987 Glutamyl-tRNA synthetase signature 211 221 6.2E-10 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 PANTHER PTHR11451 268 547 7.5E-203 T 23-04-2016 SD28_RS06015 64f7c8cdffa85885737efe4e693ecc69 554 PANTHER PTHR11451 10 248 7.5E-203 T 23-04-2016 SD28_RS04815 0c8730740905bb58d33216f502e8c9cb 454 Gene3D G3DSA:1.10.275.10 5 129 1.9E-44 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal SD28_RS04815 0c8730740905bb58d33216f502e8c9cb 454 SUPERFAMILY SSF48557 5 451 2.67E-125 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 SD28_RS04815 0c8730740905bb58d33216f502e8c9cb 454 Pfam PF00206 Lyase 10 333 6.0E-90 T 23-04-2016 IPR022761 Fumarate lyase, N-terminal SD28_RS04815 0c8730740905bb58d33216f502e8c9cb 454 Gene3D G3DSA:1.20.200.10 130 393 1.3E-83 T 23-04-2016 SD28_RS04815 0c8730740905bb58d33216f502e8c9cb 454 PANTHER PTHR11444 6 450 7.4E-207 T 23-04-2016 IPR000362 Fumarate lyase family SD28_RS04815 0c8730740905bb58d33216f502e8c9cb 454 PANTHER PTHR11444:SF22 6 450 7.4E-207 T 23-04-2016 SD28_RS04815 0c8730740905bb58d33216f502e8c9cb 454 ProSitePatterns PS00163 Fumarate lyases signature. 308 317 - T 23-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 SD28_RS04815 0c8730740905bb58d33216f502e8c9cb 454 Pfam PF10415 Fumarase C C-terminus 399 451 6.6E-20 T 23-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 SD28_RS04815 0c8730740905bb58d33216f502e8c9cb 454 PRINTS PR00149 Fumarate lyase superfamily signature 262 289 2.6E-26 T 23-04-2016 IPR000362 Fumarate lyase family SD28_RS04815 0c8730740905bb58d33216f502e8c9cb 454 PRINTS PR00149 Fumarate lyase superfamily signature 171 189 2.6E-26 T 23-04-2016 IPR000362 Fumarate lyase family SD28_RS04815 0c8730740905bb58d33216f502e8c9cb 454 PRINTS PR00149 Fumarate lyase superfamily signature 308 324 2.6E-26 T 23-04-2016 IPR000362 Fumarate lyase family SD28_RS04815 0c8730740905bb58d33216f502e8c9cb 454 PRINTS PR00149 Fumarate lyase superfamily signature 125 143 2.6E-26 T 23-04-2016 IPR000362 Fumarate lyase family SD28_RS04815 0c8730740905bb58d33216f502e8c9cb 454 Gene3D G3DSA:1.10.40.30 399 451 1.7E-19 T 23-04-2016 SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 Gene3D G3DSA:1.10.8.60 347 455 1.4E-33 T 23-04-2016 SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 5 455 1.0E-207 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 Gene3D G3DSA:3.40.50.300 257 343 3.1E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 Gene3D G3DSA:3.40.50.300 6 111 3.1E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 2 455 43.017 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 PANTHER PTHR11262 5 106 4.8E-202 T 23-04-2016 SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 PANTHER PTHR11262 230 455 4.8E-202 T 23-04-2016 SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 Pfam PF07724 AAA domain (Cdc48 subfamily) 199 341 2.9E-42 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 SMART SM01086 347 446 1.1E-17 T 23-04-2016 IPR019489 Clp ATPase, C-terminal SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 SMART SM00382 50 344 6.1E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 347 417 1.7E-5 T 23-04-2016 IPR019489 Clp ATPase, C-terminal SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 Gene3D G3DSA:1.10.8.10 112 189 1.6E-28 T 23-04-2016 SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 Gene3D G3DSA:1.10.8.10 225 255 1.6E-28 T 23-04-2016 SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 SUPERFAMILY SSF52540 5 452 9.67E-87 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 PANTHER PTHR11262:SF3 5 106 4.8E-202 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 PANTHER PTHR11262:SF3 230 455 4.8E-202 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 SD28_RS04355 86f8805edfc6f5f1ec3f4568b7fbda34 455 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 54 108 9.5E-7 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 SD28_RS07050 8a6c8ccfcc9d6e41db6cdb04fdc840d2 451 SUPERFAMILY SSF51246 332 444 3.09E-43 T 23-04-2016 IPR011054 Rudiment single hybrid motif SD28_RS07050 8a6c8ccfcc9d6e41db6cdb04fdc840d2 451 SUPERFAMILY SSF56059 83 345 4.04E-67 T 23-04-2016 SD28_RS07050 8a6c8ccfcc9d6e41db6cdb04fdc840d2 451 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SD28_RS07050 8a6c8ccfcc9d6e41db6cdb04fdc840d2 451 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 7.2E-79 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SD28_RS07050 8a6c8ccfcc9d6e41db6cdb04fdc840d2 451 PANTHER PTHR18866 1 445 1.5E-291 T 23-04-2016 SD28_RS07050 8a6c8ccfcc9d6e41db6cdb04fdc840d2 451 Gene3D G3DSA:3.30.470.20 204 445 2.2E-99 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS07050 8a6c8ccfcc9d6e41db6cdb04fdc840d2 451 Gene3D G3DSA:3.30.1490.20 130 203 4.8E-27 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 SD28_RS07050 8a6c8ccfcc9d6e41db6cdb04fdc840d2 451 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 4.8E-47 T 23-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain SD28_RS07050 8a6c8ccfcc9d6e41db6cdb04fdc840d2 451 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SD28_RS07050 8a6c8ccfcc9d6e41db6cdb04fdc840d2 451 Gene3D G3DSA:3.40.50.20 1 129 2.7E-54 T 23-04-2016 IPR016185 Pre-ATP-grasp domain SD28_RS07050 8a6c8ccfcc9d6e41db6cdb04fdc840d2 451 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 2.8E-41 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal SD28_RS07050 8a6c8ccfcc9d6e41db6cdb04fdc840d2 451 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 446 5.6E-225 T 23-04-2016 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 SD28_RS07050 8a6c8ccfcc9d6e41db6cdb04fdc840d2 451 SUPERFAMILY SSF52440 1 113 2.16E-49 T 23-04-2016 IPR016185 Pre-ATP-grasp domain SD28_RS07050 8a6c8ccfcc9d6e41db6cdb04fdc840d2 451 SMART SM00878 336 441 6.0E-64 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal SD28_RS05500 87732893a85b93ea6ba44041ec9a9854 176 PRINTS PR01100 Shikimate kinase family signature 99 116 1.1E-25 T 23-04-2016 SD28_RS05500 87732893a85b93ea6ba44041ec9a9854 176 PRINTS PR01100 Shikimate kinase family signature 31 44 1.1E-25 T 23-04-2016 SD28_RS05500 87732893a85b93ea6ba44041ec9a9854 176 PRINTS PR01100 Shikimate kinase family signature 59 67 1.1E-25 T 23-04-2016 SD28_RS05500 87732893a85b93ea6ba44041ec9a9854 176 PRINTS PR01100 Shikimate kinase family signature 78 87 1.1E-25 T 23-04-2016 SD28_RS05500 87732893a85b93ea6ba44041ec9a9854 176 PRINTS PR01100 Shikimate kinase family signature 7 22 1.1E-25 T 23-04-2016 SD28_RS05500 87732893a85b93ea6ba44041ec9a9854 176 Hamap MF_00109 Shikimate kinase [aroK]. 4 171 29.47 T 23-04-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS05500 87732893a85b93ea6ba44041ec9a9854 176 Pfam PF01202 Shikimate kinase 14 168 5.7E-52 T 23-04-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS05500 87732893a85b93ea6ba44041ec9a9854 176 PANTHER PTHR21087 1 176 1.1E-61 T 23-04-2016 SD28_RS05500 87732893a85b93ea6ba44041ec9a9854 176 Gene3D G3DSA:3.40.50.300 3 172 8.2E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05500 87732893a85b93ea6ba44041ec9a9854 176 PANTHER PTHR21087:SF0 1 176 1.1E-61 T 23-04-2016 SD28_RS05500 87732893a85b93ea6ba44041ec9a9854 176 ProSitePatterns PS01128 Shikimate kinase signature. 60 86 - T 23-04-2016 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS05500 87732893a85b93ea6ba44041ec9a9854 176 SUPERFAMILY SSF52540 5 169 2.87E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00705 5b44e78d6e7e42a58585ea64210fe8de 174 PANTHER PTHR11910 6 172 2.7E-32 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 SD28_RS00705 5b44e78d6e7e42a58585ea64210fe8de 174 PRINTS PR00125 ATP synthase delta subunit signature 132 147 7.6E-23 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 SD28_RS00705 5b44e78d6e7e42a58585ea64210fe8de 174 PRINTS PR00125 ATP synthase delta subunit signature 147 165 7.6E-23 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 SD28_RS00705 5b44e78d6e7e42a58585ea64210fe8de 174 PRINTS PR00125 ATP synthase delta subunit signature 71 82 7.6E-23 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 SD28_RS00705 5b44e78d6e7e42a58585ea64210fe8de 174 PRINTS PR00125 ATP synthase delta subunit signature 82 96 7.6E-23 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 SD28_RS00705 5b44e78d6e7e42a58585ea64210fe8de 174 PRINTS PR00125 ATP synthase delta subunit signature 7 26 7.6E-23 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 SD28_RS00705 5b44e78d6e7e42a58585ea64210fe8de 174 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 174 18.345 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 SD28_RS00705 5b44e78d6e7e42a58585ea64210fe8de 174 PANTHER PTHR11910:SF1 6 172 2.7E-32 T 23-04-2016 SD28_RS00705 5b44e78d6e7e42a58585ea64210fe8de 174 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 172 3.8E-36 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 SD28_RS00705 5b44e78d6e7e42a58585ea64210fe8de 174 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 171 1.1E-43 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 SD28_RS00705 5b44e78d6e7e42a58585ea64210fe8de 174 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 134 153 - T 23-04-2016 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 SD28_RS00705 5b44e78d6e7e42a58585ea64210fe8de 174 Gene3D G3DSA:1.10.520.20 2 102 4.0E-24 T 23-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain SD28_RS00705 5b44e78d6e7e42a58585ea64210fe8de 174 SUPERFAMILY SSF47928 4 102 2.48E-21 T 23-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain SD28_RS01950 d1d60cbba664c2008a791295eda59344 412 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 128 146 3.7E-5 T 23-04-2016 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 SD28_RS01950 d1d60cbba664c2008a791295eda59344 412 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 61 74 3.7E-5 T 23-04-2016 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 SD28_RS01950 d1d60cbba664c2008a791295eda59344 412 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 219 230 3.7E-5 T 23-04-2016 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 SD28_RS01950 d1d60cbba664c2008a791295eda59344 412 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 187 200 3.7E-5 T 23-04-2016 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 SD28_RS01950 d1d60cbba664c2008a791295eda59344 412 PANTHER PTHR19446 6 325 4.2E-79 T 23-04-2016 SD28_RS01950 d1d60cbba664c2008a791295eda59344 412 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 10 375 5.0E-124 T 23-04-2016 IPR030931 Group II intron reverse transcriptase/maturase SD28_RS01950 d1d60cbba664c2008a791295eda59344 412 SUPERFAMILY SSF56672 21 350 5.44E-54 T 23-04-2016 SD28_RS01950 d1d60cbba664c2008a791295eda59344 412 PANTHER PTHR19446:SF107 6 325 4.2E-79 T 23-04-2016 SD28_RS01950 d1d60cbba664c2008a791295eda59344 412 Pfam PF08388 Group II intron, maturase-specific domain 311 382 1.0E-15 T 23-04-2016 IPR013597 Group II intron, maturase-specific SD28_RS01950 d1d60cbba664c2008a791295eda59344 412 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 66 286 1.6E-46 T 23-04-2016 IPR000477 Reverse transcriptase domain SD28_RS01955 d1d60cbba664c2008a791295eda59344 412 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 128 146 3.7E-5 T 23-04-2016 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 SD28_RS01955 d1d60cbba664c2008a791295eda59344 412 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 61 74 3.7E-5 T 23-04-2016 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 SD28_RS01955 d1d60cbba664c2008a791295eda59344 412 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 219 230 3.7E-5 T 23-04-2016 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 SD28_RS01955 d1d60cbba664c2008a791295eda59344 412 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 187 200 3.7E-5 T 23-04-2016 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 SD28_RS01955 d1d60cbba664c2008a791295eda59344 412 PANTHER PTHR19446 6 325 4.2E-79 T 23-04-2016 SD28_RS01955 d1d60cbba664c2008a791295eda59344 412 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 10 375 5.0E-124 T 23-04-2016 IPR030931 Group II intron reverse transcriptase/maturase SD28_RS01955 d1d60cbba664c2008a791295eda59344 412 SUPERFAMILY SSF56672 21 350 5.44E-54 T 23-04-2016 SD28_RS01955 d1d60cbba664c2008a791295eda59344 412 PANTHER PTHR19446:SF107 6 325 4.2E-79 T 23-04-2016 SD28_RS01955 d1d60cbba664c2008a791295eda59344 412 Pfam PF08388 Group II intron, maturase-specific domain 311 382 1.0E-15 T 23-04-2016 IPR013597 Group II intron, maturase-specific SD28_RS01955 d1d60cbba664c2008a791295eda59344 412 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 66 286 1.6E-46 T 23-04-2016 IPR000477 Reverse transcriptase domain SD28_RS01235 d08e984497228f70797ae224ebfdf968 281 SUPERFAMILY SSF48179 148 271 1.87E-34 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 SD28_RS01235 d08e984497228f70797ae224ebfdf968 281 Gene3D G3DSA:1.10.3660.10 155 273 2.4E-44 T 23-04-2016 SD28_RS01235 d08e984497228f70797ae224ebfdf968 281 Pfam PF02153 Prephenate dehydrogenase 43 251 1.3E-31 T 23-04-2016 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 SD28_RS01235 d08e984497228f70797ae224ebfdf968 281 PANTHER PTHR21363 3 274 1.3E-50 T 23-04-2016 SD28_RS01235 d08e984497228f70797ae224ebfdf968 281 PANTHER PTHR21363:SF0 3 274 1.3E-50 T 23-04-2016 SD28_RS01235 d08e984497228f70797ae224ebfdf968 281 SUPERFAMILY SSF51735 2 146 3.16E-31 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS01235 d08e984497228f70797ae224ebfdf968 281 Gene3D G3DSA:3.40.50.720 1 154 6.0E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS02525 6e2a7a1d14a381c98d693ba6a951bdac 499 PIRSF PIRSF000538 3 499 2.0E-175 T 23-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 SD28_RS02525 6e2a7a1d14a381c98d693ba6a951bdac 499 PANTHER PTHR10196:SF9 1 499 1.9E-249 T 23-04-2016 SD28_RS02525 6e2a7a1d14a381c98d693ba6a951bdac 499 SUPERFAMILY SSF53067 255 498 1.36E-80 T 23-04-2016 SD28_RS02525 6e2a7a1d14a381c98d693ba6a951bdac 499 Hamap MF_00186 Glycerol kinase [glpK]. 3 498 57.613 T 23-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 SD28_RS02525 6e2a7a1d14a381c98d693ba6a951bdac 499 Gene3D G3DSA:3.30.420.40 1 253 9.5E-103 T 23-04-2016 SD28_RS02525 6e2a7a1d14a381c98d693ba6a951bdac 499 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 136 148 - T 23-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 SD28_RS02525 6e2a7a1d14a381c98d693ba6a951bdac 499 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 497 1.3E-223 T 23-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 SD28_RS02525 6e2a7a1d14a381c98d693ba6a951bdac 499 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 262 451 4.4E-55 T 23-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 SD28_RS02525 6e2a7a1d14a381c98d693ba6a951bdac 499 SUPERFAMILY SSF53067 5 256 3.97E-93 T 23-04-2016 SD28_RS02525 6e2a7a1d14a381c98d693ba6a951bdac 499 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 253 3.4E-84 T 23-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 SD28_RS02525 6e2a7a1d14a381c98d693ba6a951bdac 499 Gene3D G3DSA:3.30.420.40 255 498 3.1E-97 T 23-04-2016 SD28_RS02525 6e2a7a1d14a381c98d693ba6a951bdac 499 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 363 383 - T 23-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 SD28_RS02525 6e2a7a1d14a381c98d693ba6a951bdac 499 PANTHER PTHR10196 1 499 1.9E-249 T 23-04-2016 SD28_RS06050 015d169bcdd6485600bdc3ceb207a3f3 348 SUPERFAMILY SSF53659 4 344 4.93E-99 T 23-04-2016 SD28_RS06050 015d169bcdd6485600bdc3ceb207a3f3 348 PANTHER PTHR30100:SF1 1 348 2.0E-125 T 23-04-2016 SD28_RS06050 015d169bcdd6485600bdc3ceb207a3f3 348 PANTHER PTHR30100 1 348 2.0E-125 T 23-04-2016 SD28_RS06050 015d169bcdd6485600bdc3ceb207a3f3 348 PIRSF PIRSF002465 1 348 7.0E-120 T 23-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 SD28_RS06050 015d169bcdd6485600bdc3ceb207a3f3 348 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 4 347 1.7E-111 T 23-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 SD28_RS06050 015d169bcdd6485600bdc3ceb207a3f3 348 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 348 135.957 T 23-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 SD28_RS06050 015d169bcdd6485600bdc3ceb207a3f3 348 Gene3D G3DSA:3.40.718.10 3 347 4.6E-128 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 SD28_RS06050 015d169bcdd6485600bdc3ceb207a3f3 348 Pfam PF02504 Fatty acid synthesis protein 4 336 1.1E-99 T 23-04-2016 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 UniPathway: UPA00085 SD28_RS03785 07fcc5c540b38479b3b00eedb7b7f930 478 PANTHER PTHR10657:SF11 2 162 8.4E-14 T 23-04-2016 SD28_RS03785 07fcc5c540b38479b3b00eedb7b7f930 478 PANTHER PTHR10657:SF11 184 248 8.4E-14 T 23-04-2016 SD28_RS03785 07fcc5c540b38479b3b00eedb7b7f930 478 SUPERFAMILY SSF109998 42 150 3.65E-13 T 23-04-2016 IPR027304 Trigger factor/SurA domain SD28_RS03785 07fcc5c540b38479b3b00eedb7b7f930 478 SUPERFAMILY SSF109998 224 243 3.65E-13 T 23-04-2016 IPR027304 Trigger factor/SurA domain SD28_RS03785 07fcc5c540b38479b3b00eedb7b7f930 478 PANTHER PTHR10657 2 162 8.4E-14 T 23-04-2016 SD28_RS03785 07fcc5c540b38479b3b00eedb7b7f930 478 PANTHER PTHR10657 184 248 8.4E-14 T 23-04-2016 SD28_RS03785 07fcc5c540b38479b3b00eedb7b7f930 478 Pfam PF13624 SurA N-terminal domain 1 123 2.9E-18 T 23-04-2016 SD28_RS06160 18e199e8bc26197737ef50ed444f5042 620 Gene3D G3DSA:1.10.8.60 341 406 1.1E-27 T 23-04-2016 SD28_RS06160 18e199e8bc26197737ef50ed444f5042 620 SUPERFAMILY SSF52540 154 401 5.89E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06160 18e199e8bc26197737ef50ed444f5042 620 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 110 602 2.3E-224 T 23-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 SD28_RS06160 18e199e8bc26197737ef50ed444f5042 620 Pfam PF01434 Peptidase family M41 391 600 3.3E-74 T 23-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 SD28_RS06160 18e199e8bc26197737ef50ed444f5042 620 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 8 616 35.964 T 23-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 SD28_RS06160 18e199e8bc26197737ef50ed444f5042 620 ProSitePatterns PS00674 AAA-protein family signature. 301 319 - T 23-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 SD28_RS06160 18e199e8bc26197737ef50ed444f5042 620 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 198 330 1.1E-44 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 SD28_RS06160 18e199e8bc26197737ef50ed444f5042 620 Pfam PF06480 FtsH Extracellular 15 92 1.6E-14 T 23-04-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 SD28_RS06160 18e199e8bc26197737ef50ed444f5042 620 Gene3D G3DSA:3.40.50.300 158 340 1.0E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06160 18e199e8bc26197737ef50ed444f5042 620 SUPERFAMILY SSF140990 413 611 3.53E-66 T 23-04-2016 SD28_RS06160 18e199e8bc26197737ef50ed444f5042 620 PANTHER PTHR23076 11 609 8.0E-301 T 23-04-2016 SD28_RS06160 18e199e8bc26197737ef50ed444f5042 620 SMART SM00382 194 333 4.6E-24 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS02770 14b222e9986c0a1b23c95cc98dc6f963 328 PANTHER PTHR30447 1 328 9.5E-152 T 23-04-2016 SD28_RS02770 14b222e9986c0a1b23c95cc98dc6f963 328 SUPERFAMILY SSF56655 1 318 1.83E-103 T 23-04-2016 SD28_RS02770 14b222e9986c0a1b23c95cc98dc6f963 328 Gene3D G3DSA:3.30.540.10 1 172 2.0E-62 T 23-04-2016 SD28_RS02770 14b222e9986c0a1b23c95cc98dc6f963 328 Gene3D G3DSA:3.30.540.10 173 320 1.3E-38 T 23-04-2016 SD28_RS02770 14b222e9986c0a1b23c95cc98dc6f963 328 PIRSF PIRSF004532 1 325 4.2E-132 T 23-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 SD28_RS02770 14b222e9986c0a1b23c95cc98dc6f963 328 PANTHER PTHR30447:SF0 1 328 9.5E-152 T 23-04-2016 SD28_RS02770 14b222e9986c0a1b23c95cc98dc6f963 328 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 315 1.5E-131 T 23-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 SD28_RS02770 14b222e9986c0a1b23c95cc98dc6f963 328 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 319 5.8E-112 T 23-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 SD28_RS01240 3c49038dadf957599cb6dc8b886b2d92 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 4 142 1.8E-45 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 SD28_RS01240 3c49038dadf957599cb6dc8b886b2d92 145 Gene3D G3DSA:3.50.80.10 1 143 3.5E-49 T 23-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain SD28_RS01240 3c49038dadf957599cb6dc8b886b2d92 145 SUPERFAMILY SSF69500 1 143 4.19E-48 T 23-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain SD28_RS01240 3c49038dadf957599cb6dc8b886b2d92 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 144 1.1E-49 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 SD28_RS01240 3c49038dadf957599cb6dc8b886b2d92 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 28.849 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 SD28_RS01240 3c49038dadf957599cb6dc8b886b2d92 145 PANTHER PTHR10472 2 141 2.5E-56 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 SD28_RS04265 6e3bc23b5247a2306e3c0abe6bd5c479 627 Pfam PF13932 GidA associated domain 403 616 6.8E-68 T 23-04-2016 IPR026904 GidA associated domain 3 SD28_RS04265 6e3bc23b5247a2306e3c0abe6bd5c479 627 SMART SM01228 547 618 2.4E-36 T 23-04-2016 SD28_RS04265 6e3bc23b5247a2306e3c0abe6bd5c479 627 Gene3D G3DSA:3.50.50.60 7 232 1.6E-43 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS04265 6e3bc23b5247a2306e3c0abe6bd5c479 627 Pfam PF01134 Glucose inhibited division protein A 8 397 4.3E-166 T 23-04-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 SD28_RS04265 6e3bc23b5247a2306e3c0abe6bd5c479 627 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 2.3E-277 T 23-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 SD28_RS04265 6e3bc23b5247a2306e3c0abe6bd5c479 627 PANTHER PTHR11806:SF0 1 623 0.0 T 23-04-2016 SD28_RS04265 6e3bc23b5247a2306e3c0abe6bd5c479 627 PANTHER PTHR11806 1 623 0.0 T 23-04-2016 SD28_RS04265 6e3bc23b5247a2306e3c0abe6bd5c479 627 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 625 41.923 T 23-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 SD28_RS04265 6e3bc23b5247a2306e3c0abe6bd5c479 627 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 369 392 - T 23-04-2016 IPR020595 MnmG-related, conserved site SD28_RS04265 6e3bc23b5247a2306e3c0abe6bd5c479 627 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 274 288 - T 23-04-2016 IPR020595 MnmG-related, conserved site SD28_RS04265 6e3bc23b5247a2306e3c0abe6bd5c479 627 SUPERFAMILY SSF51905 97 262 4.12E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS04265 6e3bc23b5247a2306e3c0abe6bd5c479 627 SUPERFAMILY SSF51905 7 66 4.12E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06445 fca9531139149ae19230ccb786e835c6 739 Gene3D G3DSA:2.120.10.90 496 696 4.1E-22 T 23-04-2016 SD28_RS06445 fca9531139149ae19230ccb786e835c6 739 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 4 735 30.975 T 23-04-2016 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS06445 fca9531139149ae19230ccb786e835c6 739 Gene3D G3DSA:3.90.199.10 31 237 1.5E-106 T 23-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 SD28_RS06445 fca9531139149ae19230ccb786e835c6 739 Gene3D G3DSA:3.90.199.10 334 399 1.5E-106 T 23-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 SD28_RS06445 fca9531139149ae19230ccb786e835c6 739 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 12 734 6.7E-274 T 23-04-2016 SD28_RS06445 fca9531139149ae19230ccb786e835c6 739 SMART SM00434 11 462 4.4E-196 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS06445 fca9531139149ae19230ccb786e835c6 739 PANTHER PTHR10169 10 523 5.0E-280 T 23-04-2016 SD28_RS06445 fca9531139149ae19230ccb786e835c6 739 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 644 685 2.6E-5 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 SD28_RS06445 fca9531139149ae19230ccb786e835c6 739 PANTHER PTHR10169:SF30 10 523 5.0E-280 T 23-04-2016 SD28_RS06445 fca9531139149ae19230ccb786e835c6 739 SUPERFAMILY SSF56719 31 485 4.19E-150 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 SD28_RS06445 fca9531139149ae19230ccb786e835c6 739 SUPERFAMILY SSF101904 498 706 7.06E-36 T 23-04-2016 SD28_RS06445 fca9531139149ae19230ccb786e835c6 739 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 469 2.6E-134 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS06445 fca9531139149ae19230ccb786e835c6 739 Gene3D G3DSA:3.30.1360.40 238 332 4.4E-18 T 23-04-2016 IPR024946 Arginine repressor C-terminal-like domain SD28_RS06030 1fd8a62842281929b1baade7a60f4a32 80 PANTHER PTHR20863 1 79 1.6E-28 T 23-04-2016 SD28_RS06030 1fd8a62842281929b1baade7a60f4a32 80 Hamap MF_01217 Acyl carrier protein [acpP]. 5 79 22.814 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 SD28_RS06030 1fd8a62842281929b1baade7a60f4a32 80 PANTHER PTHR20863:SF28 1 79 1.6E-28 T 23-04-2016 SD28_RS06030 1fd8a62842281929b1baade7a60f4a32 80 Gene3D G3DSA:1.10.1200.10 5 79 1.6E-33 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain SD28_RS06030 1fd8a62842281929b1baade7a60f4a32 80 ProSitePatterns PS00012 Phosphopantetheine attachment site. 34 49 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site SD28_RS06030 1fd8a62842281929b1baade7a60f4a32 80 SUPERFAMILY SSF47336 1 79 1.7E-24 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain SD28_RS06030 1fd8a62842281929b1baade7a60f4a32 80 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 43 78 2.0E-12 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 SD28_RS06030 1fd8a62842281929b1baade7a60f4a32 80 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 5 78 1.2E-33 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 SD28_RS06030 1fd8a62842281929b1baade7a60f4a32 80 Pfam PF00550 Phosphopantetheine attachment site 10 75 2.1E-17 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain SD28_RS07080 eb3ace1ec05025c2ccc36da8c5dd4006 368 PANTHER PTHR21716:SF19 11 345 6.3E-89 T 23-04-2016 SD28_RS07080 eb3ace1ec05025c2ccc36da8c5dd4006 368 Pfam PF01594 Domain of unknown function DUF20 21 345 5.2E-56 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like SD28_RS07080 eb3ace1ec05025c2ccc36da8c5dd4006 368 PANTHER PTHR21716 11 345 6.3E-89 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 Gene3D G3DSA:1.10.486.10 555 696 1.4E-27 T 23-04-2016 SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 PANTHER PTHR11070 279 469 1.5E-203 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 PANTHER PTHR11070 763 1131 1.5E-203 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 PANTHER PTHR11070 1 183 1.5E-203 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 PANTHER PTHR11070 498 741 1.5E-203 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 Gene3D G3DSA:3.90.320.10 851 1136 8.2E-75 T 23-04-2016 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 Gene3D G3DSA:3.40.50.300 418 551 2.8E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 Gene3D G3DSA:3.40.50.300 697 804 2.8E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 SUPERFAMILY SSF52980 861 1136 3.32E-59 T 23-04-2016 IPR011335 Restriction endonuclease type II-like SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 PANTHER PTHR11070:SF23 279 469 1.5E-203 T 23-04-2016 SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 PANTHER PTHR11070:SF23 763 1131 1.5E-203 T 23-04-2016 SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 PANTHER PTHR11070:SF23 1 183 1.5E-203 T 23-04-2016 SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 PANTHER PTHR11070:SF23 498 741 1.5E-203 T 23-04-2016 SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 Pfam PF13361 UvrD-like helicase C-terminal domain 416 590 1.6E-9 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 Pfam PF13361 UvrD-like helicase C-terminal domain 629 784 4.6E-15 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 4 1132 5.8E-218 T 23-04-2016 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 SUPERFAMILY SSF52540 299 790 8.64E-95 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 SUPERFAMILY SSF52540 13 140 8.64E-95 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 1 1136 12.678 T 23-04-2016 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 Gene3D G3DSA:3.40.50.300 309 409 4.7E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 Gene3D G3DSA:3.40.50.300 13 64 4.7E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 Gene3D G3DSA:3.40.50.300 97 157 4.7E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 Pfam PF00580 UvrD/REP helicase N-terminal domain 13 410 1.9E-60 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 SD28_RS07335 7406ef8a7e00c5692938fe96f5fb08aa 1137 Pfam PF12705 PD-(D/E)XK nuclease superfamily 908 1109 3.9E-8 T 23-04-2016 SD28_RS06705 60a4da9b21c524ab133c2377c5915adf 515 SUPERFAMILY SSF53756 116 370 5.5E-10 T 23-04-2016 SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 SUPERFAMILY SSF50104 2 62 2.65E-19 T 23-04-2016 IPR008991 Translation protein SH3-like domain SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 23-04-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 TIGRFAM TIGR00038 efp: translation elongation factor P 4 187 9.6E-77 T 23-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 6 62 5.1E-25 T 23-04-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 Gene3D G3DSA:2.40.50.140 66 129 2.5E-22 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 Hamap MF_00141 Elongation factor P [efp]. 3 187 48.836 T 23-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 PANTHER PTHR30053 1 188 1.7E-87 T 23-04-2016 SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 Pfam PF09285 Elongation factor P, C-terminal 131 186 2.0E-25 T 23-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 PIRSF PIRSF005901 2 188 3.8E-67 T 23-04-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 SMART SM00841 131 186 1.0E-31 T 23-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 Gene3D G3DSA:2.30.30.30 1 63 4.3E-28 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 Gene3D G3DSA:2.40.50.140 130 187 1.9E-28 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 SUPERFAMILY SSF50249 67 128 2.66E-16 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 Pfam PF01132 Elongation factor P (EF-P) OB domain 73 123 1.6E-20 T 23-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 SMART SM01185 69 123 1.5E-23 T 23-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 SD28_RS01590 d976324d9aced2dbf9a4472c9d60d500 189 SUPERFAMILY SSF50249 130 187 4.8E-18 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS05745 2dd731a098572de05d433744c50108e3 208 Pfam PF04193 PQ loop repeat 121 176 8.6E-12 T 23-04-2016 IPR006603 PQ-loop repeat SD28_RS05745 2dd731a098572de05d433744c50108e3 208 Pfam PF04193 PQ loop repeat 5 63 1.6E-6 T 23-04-2016 IPR006603 PQ-loop repeat SD28_RS05745 2dd731a098572de05d433744c50108e3 208 SMART SM00679 132 163 0.0031 T 23-04-2016 IPR006603 PQ-loop repeat SD28_RS03660 2a2903b5184110a82197fa0f472453ff 350 SUPERFAMILY SSF52540 1 240 8.72E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03660 2a2903b5184110a82197fa0f472453ff 350 Gene3D G3DSA:3.30.70.260 237 344 1.0E-27 T 23-04-2016 SD28_RS03660 2a2903b5184110a82197fa0f472453ff 350 PANTHER PTHR24220:SF455 3 315 1.1E-129 T 23-04-2016 IPR026253 Methionine import ATP-binding protein MetN GO:0005524|GO:0015821|GO:0042626 SD28_RS03660 2a2903b5184110a82197fa0f472453ff 350 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS03660 2a2903b5184110a82197fa0f472453ff 350 SMART SM00382 30 217 1.6E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS03660 2a2903b5184110a82197fa0f472453ff 350 Pfam PF09383 NIL domain 270 341 8.2E-17 T 23-04-2016 IPR018449 NIL domain SD28_RS03660 2a2903b5184110a82197fa0f472453ff 350 PANTHER PTHR24220 3 315 1.1E-129 T 23-04-2016 SD28_RS03660 2a2903b5184110a82197fa0f472453ff 350 SMART SM00930 267 342 1.3E-21 T 23-04-2016 IPR018449 NIL domain SD28_RS03660 2a2903b5184110a82197fa0f472453ff 350 SUPERFAMILY SSF55021 248 344 7.78E-21 T 23-04-2016 SD28_RS03660 2a2903b5184110a82197fa0f472453ff 350 Gene3D G3DSA:3.40.50.300 1 236 1.6E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03660 2a2903b5184110a82197fa0f472453ff 350 Pfam PF00005 ABC transporter 21 169 2.5E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS00780 d83a53d38646b10f655639852eccc443 345 SUPERFAMILY SSF51726 2 344 4.45E-111 T 23-04-2016 SD28_RS00780 d83a53d38646b10f655639852eccc443 345 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 137 153 - T 23-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS00780 d83a53d38646b10f655639852eccc443 345 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 5 341 1.7E-128 T 23-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS00780 d83a53d38646b10f655639852eccc443 345 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 2 344 46.766 T 23-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS00780 d83a53d38646b10f655639852eccc443 345 Pfam PF09280 XPC-binding domain 157 181 2.6E-5 T 23-04-2016 IPR015360 XPC-binding domain GO:0003684|GO:0006289|GO:0043161 SD28_RS00780 d83a53d38646b10f655639852eccc443 345 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 3 342 3.2E-128 T 23-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS00780 d83a53d38646b10f655639852eccc443 345 PANTHER PTHR21091 12 343 5.2E-134 T 23-04-2016 SD28_RS00780 d83a53d38646b10f655639852eccc443 345 PANTHER PTHR21091:SF2 12 343 5.2E-134 T 23-04-2016 SD28_RS00780 d83a53d38646b10f655639852eccc443 345 Gene3D G3DSA:3.20.20.210 2 343 1.0E-134 T 23-04-2016 SD28_RS00780 d83a53d38646b10f655639852eccc443 345 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 18 27 - T 23-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS06335 79f74647f7986d4d4d186d8575f58d7b 289 ProSitePatterns PS00146 Beta-lactamase class-A active site. 61 76 - T 23-04-2016 IPR023650 Beta-lactamase, class-A active site KEGG: 00311+3.5.2.6 SD28_RS06335 79f74647f7986d4d4d186d8575f58d7b 289 PANTHER PTHR35333 8 284 4.6E-58 T 23-04-2016 SD28_RS06335 79f74647f7986d4d4d186d8575f58d7b 289 SUPERFAMILY SSF56601 27 282 1.16E-59 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like SD28_RS06335 79f74647f7986d4d4d186d8575f58d7b 289 Pfam PF13354 Beta-lactamase enzyme family 49 256 4.6E-37 T 23-04-2016 SD28_RS06335 79f74647f7986d4d4d186d8575f58d7b 289 PANTHER PTHR35333:SF2 8 284 4.6E-58 T 23-04-2016 SD28_RS06335 79f74647f7986d4d4d186d8575f58d7b 289 Gene3D G3DSA:3.40.710.10 26 283 7.4E-77 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like SD28_RS06335 79f74647f7986d4d4d186d8575f58d7b 289 PRINTS PR00118 Beta-lactamase class A signature 199 214 1.7E-31 T 23-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 SD28_RS06335 79f74647f7986d4d4d186d8575f58d7b 289 PRINTS PR00118 Beta-lactamase class A signature 136 160 1.7E-31 T 23-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 SD28_RS06335 79f74647f7986d4d4d186d8575f58d7b 289 PRINTS PR00118 Beta-lactamase class A signature 28 52 1.7E-31 T 23-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 SD28_RS06335 79f74647f7986d4d4d186d8575f58d7b 289 PRINTS PR00118 Beta-lactamase class A signature 59 76 1.7E-31 T 23-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 SD28_RS06335 79f74647f7986d4d4d186d8575f58d7b 289 PRINTS PR00118 Beta-lactamase class A signature 162 187 1.7E-31 T 23-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 SD28_RS06335 79f74647f7986d4d4d186d8575f58d7b 289 PRINTS PR00118 Beta-lactamase class A signature 101 126 1.7E-31 T 23-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 SD28_RS06335 79f74647f7986d4d4d186d8575f58d7b 289 PRINTS PR00118 Beta-lactamase class A signature 216 231 1.7E-31 T 23-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 SD28_RS06260 a201d1f8fb3694a53bb5d92700c87caf 512 Gene3D G3DSA:3.40.1450.10 77 307 1.0E-95 T 23-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 SD28_RS06260 a201d1f8fb3694a53bb5d92700c87caf 512 Pfam PF01676 Metalloenzyme superfamily 4 496 8.0E-80 T 23-04-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 SD28_RS06260 a201d1f8fb3694a53bb5d92700c87caf 512 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 81 295 3.0E-82 T 23-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 SD28_RS06260 a201d1f8fb3694a53bb5d92700c87caf 512 PANTHER PTHR31637:SF0 1 512 5.7E-276 T 23-04-2016 SD28_RS06260 a201d1f8fb3694a53bb5d92700c87caf 512 PANTHER PTHR31637 1 512 5.7E-276 T 23-04-2016 SD28_RS06260 a201d1f8fb3694a53bb5d92700c87caf 512 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 3 509 50.077 T 23-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 SD28_RS06260 a201d1f8fb3694a53bb5d92700c87caf 512 SUPERFAMILY SSF64158 76 306 1.11E-85 T 23-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 SD28_RS06260 a201d1f8fb3694a53bb5d92700c87caf 512 SUPERFAMILY SSF53649 311 508 2.88E-73 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 SD28_RS06260 a201d1f8fb3694a53bb5d92700c87caf 512 SUPERFAMILY SSF53649 5 76 2.88E-73 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 SD28_RS06260 a201d1f8fb3694a53bb5d92700c87caf 512 Gene3D G3DSA:3.40.720.10 4 76 2.7E-87 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 SD28_RS06260 a201d1f8fb3694a53bb5d92700c87caf 512 Gene3D G3DSA:3.40.720.10 311 508 2.7E-87 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 SD28_RS06260 a201d1f8fb3694a53bb5d92700c87caf 512 PIRSF PIRSF001492 1 511 1.6E-211 T 23-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 SD28_RS06260 a201d1f8fb3694a53bb5d92700c87caf 512 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 4 508 1.5E-226 T 23-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 SD28_RS07465 6369653221564038dba38ccce4a5ecfb 413 Gene3D G3DSA:1.10.3710.10 334 410 3.7E-23 T 23-04-2016 SD28_RS07465 6369653221564038dba38ccce4a5ecfb 413 Gene3D G3DSA:1.20.272.10 234 331 2.5E-42 T 23-04-2016 SD28_RS07465 6369653221564038dba38ccce4a5ecfb 413 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 8 127 2.6E-12 T 23-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 SD28_RS07465 6369653221564038dba38ccce4a5ecfb 413 PANTHER PTHR13779:SF7 1 413 5.0E-147 T 23-04-2016 SD28_RS07465 6369653221564038dba38ccce4a5ecfb 413 Gene3D G3DSA:3.40.50.300 2 142 2.4E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07465 6369653221564038dba38ccce4a5ecfb 413 SUPERFAMILY SSF48019 238 410 1.08E-64 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 SD28_RS07465 6369653221564038dba38ccce4a5ecfb 413 PANTHER PTHR13779 1 413 5.0E-147 T 23-04-2016 SD28_RS07465 6369653221564038dba38ccce4a5ecfb 413 Gene3D G3DSA:1.10.8.60 143 210 5.5E-7 T 23-04-2016 SD28_RS07465 6369653221564038dba38ccce4a5ecfb 413 SMART SM00382 40 159 2.7E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS07465 6369653221564038dba38ccce4a5ecfb 413 SUPERFAMILY SSF52540 3 220 3.33E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07465 6369653221564038dba38ccce4a5ecfb 413 Pfam PF12002 MgsA AAA+ ATPase C terminal 252 407 7.1E-62 T 23-04-2016 IPR021886 MgsA AAA+ ATPase C-terminal SD28_RS07465 6369653221564038dba38ccce4a5ecfb 413 Pfam PF16193 AAA C-terminal domain 173 251 1.3E-16 T 23-04-2016 IPR032423 AAA ATPase, C-terminal domain SD28_RS03280 6ad6e4f57de3fd75459b28bd83aedf57 233 Gene3D G3DSA:3.30.470.20 34 105 5.0E-6 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS03280 6ad6e4f57de3fd75459b28bd83aedf57 233 SUPERFAMILY SSF56059 8 132 3.62E-6 T 23-04-2016 SD28_RS04295 d75571d1adb17c680799c4a338e7a16b 266 PANTHER PTHR21198:SF2 1 263 2.4E-81 T 23-04-2016 SD28_RS04295 d75571d1adb17c680799c4a338e7a16b 266 Hamap MF_00258 Glutamate racemase [murI]. 5 254 33.067 T 23-04-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS04295 d75571d1adb17c680799c4a338e7a16b 266 TIGRFAM TIGR00067 glut_race: glutamate racemase 7 247 7.4E-65 T 23-04-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS04295 d75571d1adb17c680799c4a338e7a16b 266 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 179 189 - T 23-04-2016 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS04295 d75571d1adb17c680799c4a338e7a16b 266 SUPERFAMILY SSF53681 110 262 1.57E-35 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS04295 d75571d1adb17c680799c4a338e7a16b 266 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 205 1.6E-28 T 23-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS04295 d75571d1adb17c680799c4a338e7a16b 266 PANTHER PTHR21198 1 263 2.4E-81 T 23-04-2016 SD28_RS04295 d75571d1adb17c680799c4a338e7a16b 266 SUPERFAMILY SSF53681 6 108 5.89E-33 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS04295 d75571d1adb17c680799c4a338e7a16b 266 Gene3D G3DSA:3.40.50.1860 4 169 9.5E-52 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS02805 cddb6bceebf56304bdd9fa3b1fac522c 427 SUPERFAMILY SSF57850 100 150 1.57E-10 T 23-04-2016 SD28_RS02805 cddb6bceebf56304bdd9fa3b1fac522c 427 SMART SM00184 101 142 0.25 T 23-04-2016 IPR001841 Zinc finger, RING-type GO:0005515|GO:0008270 SD28_RS02805 cddb6bceebf56304bdd9fa3b1fac522c 427 SMART SM00184 18 66 3.2E-5 T 23-04-2016 IPR001841 Zinc finger, RING-type GO:0005515|GO:0008270 SD28_RS02805 cddb6bceebf56304bdd9fa3b1fac522c 427 SUPERFAMILY SSF57850 5 82 4.54E-15 T 23-04-2016 SD28_RS02805 cddb6bceebf56304bdd9fa3b1fac522c 427 Gene3D G3DSA:3.30.40.10 10 73 8.5E-13 T 23-04-2016 IPR013083 Zinc finger, RING/FYVE/PHD-type SD28_RS02805 cddb6bceebf56304bdd9fa3b1fac522c 427 Gene3D G3DSA:3.40.50.300 357 399 9.4E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02805 cddb6bceebf56304bdd9fa3b1fac522c 427 Pfam PF12678 RING-H2 zinc finger domain 16 67 8.6E-9 T 23-04-2016 IPR024766 Zinc finger, RING-H2-type GO:0008270 UniPathway: UPA00143 SD28_RS02805 cddb6bceebf56304bdd9fa3b1fac522c 427 Pfam PF13639 Ring finger domain 99 143 1.5E-7 T 23-04-2016 IPR001841 Zinc finger, RING-type GO:0005515|GO:0008270 SD28_RS02805 cddb6bceebf56304bdd9fa3b1fac522c 427 SUPERFAMILY SSF52540 342 408 3.6E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02805 cddb6bceebf56304bdd9fa3b1fac522c 427 Gene3D G3DSA:3.30.40.10 97 149 2.5E-11 T 23-04-2016 IPR013083 Zinc finger, RING/FYVE/PHD-type SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 Gene3D G3DSA:3.30.1360.40 236 333 9.8E-40 T 23-04-2016 IPR024946 Arginine repressor C-terminal-like domain SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 Gene3D G3DSA:3.90.199.10 34 216 4.0E-82 T 23-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 2 845 29.083 T 23-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 SUPERFAMILY SSF56719 30 523 1.57E-179 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 SUPERFAMILY SSF101904 534 853 8.37E-108 T 23-04-2016 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 502 2.6E-154 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 PANTHER PTHR10169:SF48 11 414 0.0 T 23-04-2016 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 PANTHER PTHR10169:SF48 451 809 0.0 T 23-04-2016 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 SMART SM00434 11 500 1.5E-272 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 Gene3D G3DSA:2.120.10.90 532 841 2.2E-128 T 23-04-2016 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 646 689 5.9E-8 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 694 740 2.3E-15 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 796 842 6.3E-14 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 590 639 9.7E-9 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 540 584 1.1E-7 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 746 791 6.3E-14 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 10 842 0.0 T 23-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 Gene3D G3DSA:1.10.268.10 363 496 2.1E-43 T 23-04-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 PANTHER PTHR10169 11 414 0.0 T 23-04-2016 SD28_RS03350 4f53adadc367f232ed1cead0e64e202a 866 PANTHER PTHR10169 451 809 0.0 T 23-04-2016 SD28_RS00770 aab06d20a78ceceb854ed8a1aec19ed7 149 Gene3D G3DSA:2.30.30.180 90 145 1.3E-7 T 23-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal SD28_RS00770 aab06d20a78ceceb854ed8a1aec19ed7 149 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 4 149 20.683 T 23-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 SD28_RS00770 aab06d20a78ceceb854ed8a1aec19ed7 149 SUPERFAMILY SSF75420 3 80 4.05E-23 T 23-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal SD28_RS00770 aab06d20a78ceceb854ed8a1aec19ed7 149 PANTHER PTHR33867:SF1 1 149 1.3E-34 T 23-04-2016 SD28_RS00770 aab06d20a78ceceb854ed8a1aec19ed7 149 Gene3D G3DSA:3.30.300.70 4 77 1.7E-26 T 23-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal SD28_RS00770 aab06d20a78ceceb854ed8a1aec19ed7 149 Pfam PF02576 Putative ribosome maturation factor RimP 9 145 8.0E-36 T 23-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 SD28_RS00770 aab06d20a78ceceb854ed8a1aec19ed7 149 SUPERFAMILY SSF74942 81 149 1.44E-9 T 23-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal SD28_RS00770 aab06d20a78ceceb854ed8a1aec19ed7 149 PANTHER PTHR33867 1 149 1.3E-34 T 23-04-2016 SD28_RS01885 5b6f449219ff732487c7e7fc3431dfdf 444 Gene3D G3DSA:3.40.640.10 65 314 7.9E-69 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS01885 5b6f449219ff732487c7e7fc3431dfdf 444 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 250 287 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SD28_RS01885 5b6f449219ff732487c7e7fc3431dfdf 444 Pfam PF00202 Aminotransferase class-III 28 438 3.1E-97 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SD28_RS01885 5b6f449219ff732487c7e7fc3431dfdf 444 PANTHER PTHR11986:SF7 6 442 1.5E-159 T 23-04-2016 SD28_RS01885 5b6f449219ff732487c7e7fc3431dfdf 444 SUPERFAMILY SSF53383 15 442 1.31E-116 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS01885 5b6f449219ff732487c7e7fc3431dfdf 444 Gene3D G3DSA:3.90.1150.10 315 442 6.3E-42 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS01885 5b6f449219ff732487c7e7fc3431dfdf 444 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 8 442 1.0E-160 T 23-04-2016 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|UniPathway: UPA00067 SD28_RS01885 5b6f449219ff732487c7e7fc3431dfdf 444 PANTHER PTHR11986 6 442 1.5E-159 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 SUPERFAMILY SSF50998 44 396 3.14E-70 T 23-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 PANTHER PTHR32303 399 415 9.8E-48 T 23-04-2016 SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 PANTHER PTHR32303 40 347 9.8E-48 T 23-04-2016 SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 5 389 33.406 T 23-04-2016 IPR017687 Outer membrane protein assembly factor BamB SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 Gene3D G3DSA:2.140.10.10 13 389 1.6E-65 T 23-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 Pfam PF13360 PQQ-like domain 79 310 2.7E-39 T 23-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 SMART SM00564 320 352 0.44 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 SMART SM00564 242 273 0.0093 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 SMART SM00564 105 137 41.0 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 SMART SM00564 66 97 1.3E-4 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 SMART SM00564 146 177 0.015 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 SMART SM00564 191 222 110.0 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 SMART SM00564 280 311 4.8 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 PANTHER PTHR32303:SF8 399 415 9.8E-48 T 23-04-2016 SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 PANTHER PTHR32303:SF8 40 347 9.8E-48 T 23-04-2016 SD28_RS00315 4c9a27cd83db09d8173d3927757abc71 458 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 11 387 7.3E-92 T 23-04-2016 IPR017687 Outer membrane protein assembly factor BamB SD28_RS05255 8b566a734a579d8c59154bd3adff0113 262 SUPERFAMILY SSF56219 1 258 4.58E-68 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase SD28_RS05255 8b566a734a579d8c59154bd3adff0113 262 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 255 3.2E-70 T 23-04-2016 SD28_RS05255 8b566a734a579d8c59154bd3adff0113 262 PANTHER PTHR22748 1 262 2.1E-88 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 SD28_RS05255 8b566a734a579d8c59154bd3adff0113 262 Gene3D G3DSA:3.60.10.10 1 258 2.4E-81 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase SD28_RS05255 8b566a734a579d8c59154bd3adff0113 262 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 250 1.3E-25 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase SD28_RS05255 8b566a734a579d8c59154bd3adff0113 262 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 256 7.1E-75 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 SD28_RS02935 9f1fac569d3346996af741865e651ba9 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 7.0E-13 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SD28_RS02935 9f1fac569d3346996af741865e651ba9 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 7.0E-13 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SD28_RS02935 9f1fac569d3346996af741865e651ba9 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 36 47 7.0E-13 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SD28_RS02935 9f1fac569d3346996af741865e651ba9 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 7.0E-13 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SD28_RS02935 9f1fac569d3346996af741865e651ba9 99 SUPERFAMILY SSF46785 8 96 1.45E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS02935 9f1fac569d3346996af741865e651ba9 99 Pfam PF01022 Bacterial regulatory protein, arsR family 23 67 1.4E-15 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SD28_RS02935 9f1fac569d3346996af741865e651ba9 99 Gene3D G3DSA:1.10.10.10 2 97 9.6E-35 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS02935 9f1fac569d3346996af741865e651ba9 99 SMART SM00418 15 93 2.0E-22 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SD28_RS02935 9f1fac569d3346996af741865e651ba9 99 PANTHER PTHR33154 1 96 2.1E-30 T 23-04-2016 SD28_RS02935 9f1fac569d3346996af741865e651ba9 99 PANTHER PTHR33154:SF10 1 96 2.1E-30 T 23-04-2016 SD28_RS04965 885a14a8f76df86b2b6c5b1e0721d4f9 138 PANTHER PTHR11911 1 120 3.4E-27 T 23-04-2016 SD28_RS04965 885a14a8f76df86b2b6c5b1e0721d4f9 138 Pfam PF00571 CBS domain 70 124 1.0E-11 T 23-04-2016 IPR000644 CBS domain SD28_RS04965 885a14a8f76df86b2b6c5b1e0721d4f9 138 Pfam PF00571 CBS domain 5 54 3.9E-12 T 23-04-2016 IPR000644 CBS domain SD28_RS04965 885a14a8f76df86b2b6c5b1e0721d4f9 138 SUPERFAMILY SSF54631 1 123 9.22E-34 T 23-04-2016 SD28_RS04965 885a14a8f76df86b2b6c5b1e0721d4f9 138 SMART SM00116 76 124 0.0017 T 23-04-2016 IPR000644 CBS domain SD28_RS04965 885a14a8f76df86b2b6c5b1e0721d4f9 138 SMART SM00116 10 58 1.0E-6 T 23-04-2016 IPR000644 CBS domain SD28_RS04965 885a14a8f76df86b2b6c5b1e0721d4f9 138 Gene3D G3DSA:3.10.580.10 1 120 8.5E-36 T 23-04-2016 SD28_RS02170 0f245e2e426185edf85eb281641315f1 295 SUPERFAMILY SSF53807 9 286 3.1E-54 T 23-04-2016 SD28_RS02170 0f245e2e426185edf85eb281641315f1 295 PANTHER PTHR30477:SF1 1 258 5.1E-31 T 23-04-2016 SD28_RS02170 0f245e2e426185edf85eb281641315f1 295 Gene3D G3DSA:3.40.50.1980 21 161 3.7E-31 T 23-04-2016 SD28_RS02170 0f245e2e426185edf85eb281641315f1 295 PANTHER PTHR30477 1 258 5.1E-31 T 23-04-2016 SD28_RS02170 0f245e2e426185edf85eb281641315f1 295 Pfam PF01297 Zinc-uptake complex component A periplasmic 25 283 9.1E-36 T 23-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 SD28_RS02170 0f245e2e426185edf85eb281641315f1 295 Gene3D G3DSA:3.40.50.1980 177 286 3.4E-11 T 23-04-2016 SD28_RS02900 49053c1dfc29a610f335b88c6fef2bce 295 SUPERFAMILY SSF111331 7 291 2.09E-74 T 23-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain SD28_RS02900 49053c1dfc29a610f335b88c6fef2bce 295 Pfam PF01513 ATP-NAD kinase 57 274 2.3E-49 T 23-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 SD28_RS02900 49053c1dfc29a610f335b88c6fef2bce 295 Hamap MF_00361 NAD kinase [nadK]. 6 290 30.269 T 23-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 SD28_RS02900 49053c1dfc29a610f335b88c6fef2bce 295 Gene3D G3DSA:3.40.50.10330 6 143 3.8E-25 T 23-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 SD28_RS02900 49053c1dfc29a610f335b88c6fef2bce 295 Gene3D G3DSA:2.60.200.30 144 266 7.2E-40 T 23-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 SD28_RS02900 49053c1dfc29a610f335b88c6fef2bce 295 PANTHER PTHR20275 6 292 2.6E-70 T 23-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 SD28_RS05205 1229c82a92e7e2194d78507f4161c056 467 PRINTS PR00171 Sugar transporter signature 354 375 7.9E-24 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS05205 1229c82a92e7e2194d78507f4161c056 467 PRINTS PR00171 Sugar transporter signature 265 275 7.9E-24 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS05205 1229c82a92e7e2194d78507f4161c056 467 PRINTS PR00171 Sugar transporter signature 377 389 7.9E-24 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS05205 1229c82a92e7e2194d78507f4161c056 467 PRINTS PR00171 Sugar transporter signature 112 131 7.9E-24 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS05205 1229c82a92e7e2194d78507f4161c056 467 PRINTS PR00171 Sugar transporter signature 29 39 7.9E-24 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS05205 1229c82a92e7e2194d78507f4161c056 467 SUPERFAMILY SSF103473 14 451 8.24E-78 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS05205 1229c82a92e7e2194d78507f4161c056 467 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 4 449 8.2E-117 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS05205 1229c82a92e7e2194d78507f4161c056 467 Pfam PF00083 Sugar (and other) transporter 21 451 4.3E-116 T 23-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 SD28_RS05205 1229c82a92e7e2194d78507f4161c056 467 PANTHER PTHR23500 16 460 1.0E-165 T 23-04-2016 SD28_RS05205 1229c82a92e7e2194d78507f4161c056 467 Gene3D G3DSA:1.20.1250.20 22 207 1.5E-28 T 23-04-2016 SD28_RS05205 1229c82a92e7e2194d78507f4161c056 467 Gene3D G3DSA:1.20.1250.20 257 448 6.2E-24 T 23-04-2016 SD28_RS05205 1229c82a92e7e2194d78507f4161c056 467 ProSitePatterns PS00216 Sugar transport proteins signature 1. 310 327 - T 23-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 PANTHER PTHR11728:SF1 1 332 1.5E-113 T 23-04-2016 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 189 210 - T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 174 198 5.1E-35 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 8 25 5.1E-35 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 239 256 5.1E-35 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 134 154 5.1E-35 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 59 86 5.1E-35 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 199 223 5.1E-35 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 PIRSF PIRSF000114 1 333 1.4E-111 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 Gene3D G3DSA:1.10.1040.10 185 327 7.3E-54 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 SUPERFAMILY SSF48179 180 332 7.48E-55 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 6 160 3.9E-38 T 23-04-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 181 321 1.5E-50 T 23-04-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 4 323 34.346 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 SUPERFAMILY SSF51735 5 180 1.12E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 PANTHER PTHR11728 1 332 1.5E-113 T 23-04-2016 SD28_RS00100 8233597b536ecc8cb4962d5d144dc05a 333 Gene3D G3DSA:3.40.50.720 3 184 3.0E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS07150 64a2ed40c8e9d5ef1c101eb64ee46f4d 155 Pfam PF00588 SpoU rRNA Methylase family 2 141 5.4E-36 T 23-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 SD28_RS07150 64a2ed40c8e9d5ef1c101eb64ee46f4d 155 PIRSF PIRSF029256 1 153 4.7E-64 T 23-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 SD28_RS07150 64a2ed40c8e9d5ef1c101eb64ee46f4d 155 PANTHER PTHR12029 1 154 3.3E-65 T 23-04-2016 SD28_RS07150 64a2ed40c8e9d5ef1c101eb64ee46f4d 155 PANTHER PTHR12029:SF31 1 154 3.3E-65 T 23-04-2016 SD28_RS07150 64a2ed40c8e9d5ef1c101eb64ee46f4d 155 SUPERFAMILY SSF75217 2 150 1.64E-41 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases SD28_RS07150 64a2ed40c8e9d5ef1c101eb64ee46f4d 155 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 150 32.175 T 23-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 SD28_RS07150 64a2ed40c8e9d5ef1c101eb64ee46f4d 155 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 150 3.9E-58 T 23-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 SD28_RS07150 64a2ed40c8e9d5ef1c101eb64ee46f4d 155 Gene3D G3DSA:3.40.1280.10 1 152 1.0E-61 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal SD28_RS04850 778ba4a9e4b60b9c6c74817db7ed4fdd 173 Pfam PF00719 Inorganic pyrophosphatase 17 172 1.5E-54 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 SD28_RS04850 778ba4a9e4b60b9c6c74817db7ed4fdd 173 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 65 71 - T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 SD28_RS04850 778ba4a9e4b60b9c6c74817db7ed4fdd 173 SUPERFAMILY SSF50324 2 172 8.24E-68 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 SD28_RS04850 778ba4a9e4b60b9c6c74817db7ed4fdd 173 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 13 173 36.08 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 SD28_RS04850 778ba4a9e4b60b9c6c74817db7ed4fdd 173 Gene3D G3DSA:3.90.80.10 2 173 4.6E-64 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 SD28_RS04850 778ba4a9e4b60b9c6c74817db7ed4fdd 173 PANTHER PTHR10286 4 173 6.5E-70 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 SD28_RS06215 a7cf292eba6cdf6d5298f2cbe560bd0a 407 SUPERFAMILY SSF63411 222 406 3.17E-33 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 SD28_RS06215 a7cf292eba6cdf6d5298f2cbe560bd0a 407 SUPERFAMILY SSF63411 13 211 7.33E-38 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 SD28_RS06215 a7cf292eba6cdf6d5298f2cbe560bd0a 407 PANTHER PTHR11851:SF140 16 407 4.0E-34 T 23-04-2016 SD28_RS06215 a7cf292eba6cdf6d5298f2cbe560bd0a 407 Pfam PF00675 Insulinase (Peptidase family M16) 16 157 1.3E-14 T 23-04-2016 IPR011765 Peptidase M16, N-terminal SD28_RS06215 a7cf292eba6cdf6d5298f2cbe560bd0a 407 PANTHER PTHR11851 16 407 4.0E-34 T 23-04-2016 SD28_RS06215 a7cf292eba6cdf6d5298f2cbe560bd0a 407 Pfam PF05193 Peptidase M16 inactive domain 165 338 6.6E-23 T 23-04-2016 IPR007863 Peptidase M16, C-terminal SD28_RS06215 a7cf292eba6cdf6d5298f2cbe560bd0a 407 Gene3D G3DSA:3.30.830.10 8 214 6.9E-47 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 SD28_RS06215 a7cf292eba6cdf6d5298f2cbe560bd0a 407 Gene3D G3DSA:3.30.830.10 226 407 5.4E-23 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 SD28_RS00620 e1ad972885d72da17f4ca97341ee3175 513 Hamap MF_00313 Glutaminase [glsA]. 99 402 35.211 T 23-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 SD28_RS00620 e1ad972885d72da17f4ca97341ee3175 513 SUPERFAMILY SSF48403 421 509 7.93E-22 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS00620 e1ad972885d72da17f4ca97341ee3175 513 PANTHER PTHR12544:SF29 39 509 5.0E-223 T 23-04-2016 SD28_RS00620 e1ad972885d72da17f4ca97341ee3175 513 SUPERFAMILY SSF56601 96 403 1.28E-104 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like SD28_RS00620 e1ad972885d72da17f4ca97341ee3175 513 TIGRFAM TIGR03814 Gln_ase: glutaminase A 104 398 5.9E-90 T 23-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 SD28_RS00620 e1ad972885d72da17f4ca97341ee3175 513 PANTHER PTHR12544 39 509 5.0E-223 T 23-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 SD28_RS00620 e1ad972885d72da17f4ca97341ee3175 513 Gene3D G3DSA:1.25.40.20 428 510 9.1E-22 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS00620 e1ad972885d72da17f4ca97341ee3175 513 Pfam PF12796 Ankyrin repeats (3 copies) 428 510 2.1E-12 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS00620 e1ad972885d72da17f4ca97341ee3175 513 SMART SM00248 456 485 7.3E-7 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS00620 e1ad972885d72da17f4ca97341ee3175 513 SMART SM00248 423 452 4600.0 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS00620 e1ad972885d72da17f4ca97341ee3175 513 Pfam PF04960 Glutaminase 116 402 1.3E-110 T 23-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 SD28_RS00620 e1ad972885d72da17f4ca97341ee3175 513 Gene3D G3DSA:3.40.710.10 94 403 1.0E-125 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like SD28_RS01205 8dcb8d596273b1ddec48e9e889dc6956 406 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 113 401 1.1E-12 T 23-04-2016 IPR010263 Type VI secretion protein, VC_A0114 SD28_RS06340 75f293c2e4caecde60c83ae10273cf96 191 Pfam PF01195 Peptidyl-tRNA hydrolase 6 187 6.0E-57 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 SD28_RS06340 75f293c2e4caecde60c83ae10273cf96 191 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 111 121 - T 23-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 SD28_RS06340 75f293c2e4caecde60c83ae10273cf96 191 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 4 182 33.091 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 SD28_RS06340 75f293c2e4caecde60c83ae10273cf96 191 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 4 189 4.1E-61 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 SD28_RS06340 75f293c2e4caecde60c83ae10273cf96 191 SUPERFAMILY SSF53178 4 189 2.88E-65 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 SD28_RS06340 75f293c2e4caecde60c83ae10273cf96 191 PANTHER PTHR17224 3 191 1.5E-69 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 SD28_RS06340 75f293c2e4caecde60c83ae10273cf96 191 Gene3D G3DSA:3.40.50.1470 2 190 1.1E-68 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 SD28_RS06340 75f293c2e4caecde60c83ae10273cf96 191 PANTHER PTHR17224:SF1 3 191 1.5E-69 T 23-04-2016 SD28_RS01595 e22a71b938d50a0aae05ac15521980cd 137 SUPERFAMILY SSF54523 9 95 4.76E-22 T 23-04-2016 SD28_RS01595 e22a71b938d50a0aae05ac15521980cd 137 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS01595 e22a71b938d50a0aae05ac15521980cd 137 Gene3D G3DSA:3.30.700.10 9 109 3.2E-19 T 23-04-2016 SD28_RS01595 e22a71b938d50a0aae05ac15521980cd 137 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 29 3.2E-9 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS01595 e22a71b938d50a0aae05ac15521980cd 137 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 3 27 1.5E-8 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS01595 e22a71b938d50a0aae05ac15521980cd 137 PANTHER PTHR30093 1 84 1.4E-21 T 23-04-2016 SD28_RS01595 e22a71b938d50a0aae05ac15521980cd 137 PRINTS PR00813 Bacterial general secretion pathway protein G signature 8 33 1.4E-9 T 23-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 SD28_RS01595 e22a71b938d50a0aae05ac15521980cd 137 PRINTS PR00813 Bacterial general secretion pathway protein G signature 44 62 1.4E-9 T 23-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 SD28_RS01595 e22a71b938d50a0aae05ac15521980cd 137 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 30 119 6.9E-19 T 23-04-2016 IPR031982 Type IV minor pilin ComP SD28_RS03310 843813b40a7c05e39ceebc2c9501294f 222 Pfam PF03737 Demethylmenaquinone methyltransferase 15 173 1.4E-25 T 23-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein SD28_RS03310 843813b40a7c05e39ceebc2c9501294f 222 PANTHER PTHR33254 10 214 4.1E-33 T 23-04-2016 SD28_RS03310 843813b40a7c05e39ceebc2c9501294f 222 PANTHER PTHR33254:SF5 10 214 4.1E-33 T 23-04-2016 SD28_RS03310 843813b40a7c05e39ceebc2c9501294f 222 Gene3D G3DSA:3.50.30.40 12 183 2.8E-35 T 23-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein SD28_RS03310 843813b40a7c05e39ceebc2c9501294f 222 SUPERFAMILY SSF89562 12 185 3.53E-31 T 23-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein SD28_RS03250 003aff124d18ec919ecb8c9f8eabde2f 167 SUPERFAMILY SSF55620 15 159 6.12E-21 T 23-04-2016 SD28_RS03250 003aff124d18ec919ecb8c9f8eabde2f 167 Gene3D G3DSA:3.30.479.10 12 158 2.1E-20 T 23-04-2016 SD28_RS03250 003aff124d18ec919ecb8c9f8eabde2f 167 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 14 159 1.7E-9 T 23-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 Gene3D G3DSA:3.80.10.10 23 176 1.1E-28 T 23-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 Gene3D G3DSA:3.80.10.10 177 325 3.9E-25 T 23-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SUPERFAMILY SSF52047 22 326 4.71E-49 T 23-04-2016 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00367 233 256 24.0 T 23-04-2016 IPR006553 Leucine-rich repeat, cysteine-containing subtype SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00367 121 145 50.0 T 23-04-2016 IPR006553 Leucine-rich repeat, cysteine-containing subtype SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00367 71 95 170.0 T 23-04-2016 IPR006553 Leucine-rich repeat, cysteine-containing subtype SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00367 257 281 8.2 T 23-04-2016 IPR006553 Leucine-rich repeat, cysteine-containing subtype SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00367 96 120 490.0 T 23-04-2016 IPR006553 Leucine-rich repeat, cysteine-containing subtype SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00367 208 232 90.0 T 23-04-2016 IPR006553 Leucine-rich repeat, cysteine-containing subtype SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00368 208 228 250.0 T 23-04-2016 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00368 96 123 5.8 T 23-04-2016 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00368 45 73 3.5 T 23-04-2016 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00368 232 255 47.0 T 23-04-2016 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00368 124 148 0.18 T 23-04-2016 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00368 257 280 28.0 T 23-04-2016 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 PANTHER PTHR24006 182 325 6.1E-40 T 23-04-2016 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 PANTHER PTHR24006 23 147 6.1E-40 T 23-04-2016 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00365 282 306 160.0 T 23-04-2016 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00365 232 255 23.0 T 23-04-2016 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00365 257 280 70.0 T 23-04-2016 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00365 208 231 63.0 T 23-04-2016 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 SMART SM00365 121 141 9.0 T 23-04-2016 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 Pfam PF13516 Leucine Rich repeat 209 227 0.024 T 23-04-2016 IPR001611 Leucine-rich repeat GO:0005515 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 Pfam PF13516 Leucine Rich repeat 49 68 0.043 T 23-04-2016 IPR001611 Leucine-rich repeat GO:0005515 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 Pfam PF13516 Leucine Rich repeat 99 117 0.47 T 23-04-2016 IPR001611 Leucine-rich repeat GO:0005515 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 Pfam PF13516 Leucine Rich repeat 123 143 4.5E-4 T 23-04-2016 IPR001611 Leucine-rich repeat GO:0005515 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 Pfam PF13516 Leucine Rich repeat 233 254 3.2E-5 T 23-04-2016 IPR001611 Leucine-rich repeat GO:0005515 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 Pfam PF13516 Leucine Rich repeat 72 91 2.5E-4 T 23-04-2016 IPR001611 Leucine-rich repeat GO:0005515 SD28_RS07755 6fe3d7795784a09c65f571dc9e805f91 331 Pfam PF13516 Leucine Rich repeat 259 279 0.0014 T 23-04-2016 IPR001611 Leucine-rich repeat GO:0005515 SD28_RS00430 75276b0314457b582a3aa1bf45c760e5 459 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 109 368 2.0E-60 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 SD28_RS00430 75276b0314457b582a3aa1bf45c760e5 459 SUPERFAMILY SSF111369 124 339 4.71E-44 T 23-04-2016 SD28_RS00430 75276b0314457b582a3aa1bf45c760e5 459 Gene3D G3DSA:2.40.50.100 228 260 2.0E-17 T 23-04-2016 SD28_RS00430 75276b0314457b582a3aa1bf45c760e5 459 Gene3D G3DSA:2.40.50.100 134 167 2.0E-17 T 23-04-2016 SD28_RS00430 75276b0314457b582a3aa1bf45c760e5 459 PANTHER PTHR30469 399 454 3.5E-99 T 23-04-2016 SD28_RS00430 75276b0314457b582a3aa1bf45c760e5 459 PANTHER PTHR30469 62 370 3.5E-99 T 23-04-2016 SD28_RS00430 75276b0314457b582a3aa1bf45c760e5 459 PANTHER PTHR30469:SF11 399 454 3.5E-99 T 23-04-2016 SD28_RS00430 75276b0314457b582a3aa1bf45c760e5 459 PANTHER PTHR30469:SF11 62 370 3.5E-99 T 23-04-2016 SD28_RS00430 75276b0314457b582a3aa1bf45c760e5 459 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 134 333 4.9E-27 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain SD28_RS03070 d77a5f9a70d01ca927c8758a26cf0520 98 Pfam PF09827 CRISPR associated protein Cas2 1 88 2.4E-9 T 23-04-2016 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 SD28_RS03070 d77a5f9a70d01ca927c8758a26cf0520 98 PIRSF PIRSF002882 1 96 1.1E-34 T 23-04-2016 IPR016368 Virulence-associated protein D SD28_RS05110 f480c80c9df704afb96b7e03551c783e 112 SUPERFAMILY SSF82057 39 112 6.41E-29 T 23-04-2016 SD28_RS05110 f480c80c9df704afb96b7e03551c783e 112 Gene3D G3DSA:2.30.30.40 43 112 2.9E-36 T 23-04-2016 SD28_RS05110 f480c80c9df704afb96b7e03551c783e 112 PANTHER PTHR30305 2 112 3.8E-68 T 23-04-2016 SD28_RS05110 f480c80c9df704afb96b7e03551c783e 112 SUPERFAMILY SSF57783 3 38 4.59E-12 T 23-04-2016 SD28_RS05110 f480c80c9df704afb96b7e03551c783e 112 Pfam PF08274 PhnA Zinc-Ribbon 4 31 1.1E-11 T 23-04-2016 IPR013987 PhnA protein, N-terminal SD28_RS05110 f480c80c9df704afb96b7e03551c783e 112 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 3 111 6.0E-50 T 23-04-2016 IPR004624 PhnA protein SD28_RS05110 f480c80c9df704afb96b7e03551c783e 112 Gene3D G3DSA:2.20.25.10 1 41 5.3E-18 T 23-04-2016 SD28_RS05110 f480c80c9df704afb96b7e03551c783e 112 Pfam PF03831 PhnA domain 45 112 2.6E-32 T 23-04-2016 IPR013988 PhnA protein, C-terminal SD28_RS05630 f0a99012bca15b7505ed7687ff54e218 261 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 228 1.6E-20 T 23-04-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 SD28_RS05630 f0a99012bca15b7505ed7687ff54e218 261 Gene3D G3DSA:3.40.50.1000 164 256 4.1E-43 T 23-04-2016 IPR023214 HAD-like domain SD28_RS05630 f0a99012bca15b7505ed7687ff54e218 261 Gene3D G3DSA:3.40.50.1000 1 74 4.1E-43 T 23-04-2016 IPR023214 HAD-like domain SD28_RS05630 f0a99012bca15b7505ed7687ff54e218 261 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 254 6.6E-52 T 23-04-2016 IPR023214 HAD-like domain SD28_RS05630 f0a99012bca15b7505ed7687ff54e218 261 SUPERFAMILY SSF56784 1 257 1.9E-52 T 23-04-2016 IPR023214 HAD-like domain SD28_RS05630 f0a99012bca15b7505ed7687ff54e218 261 PANTHER PTHR10000 1 261 8.3E-38 T 23-04-2016 SD28_RS05630 f0a99012bca15b7505ed7687ff54e218 261 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 254 8.5E-47 T 23-04-2016 IPR000150 Cof protein GO:0016787 SD28_RS02330 184ee9bc6255ad44186c62f7992938d1 92 Gene3D G3DSA:3.30.860.10 2 91 1.8E-40 T 23-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 SD28_RS02330 184ee9bc6255ad44186c62f7992938d1 92 Pfam PF00203 Ribosomal protein S19 3 83 1.0E-36 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 SD28_RS02330 184ee9bc6255ad44186c62f7992938d1 92 SUPERFAMILY SSF54570 3 84 8.37E-35 T 23-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 SD28_RS02330 184ee9bc6255ad44186c62f7992938d1 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.6E-22 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 SD28_RS02330 184ee9bc6255ad44186c62f7992938d1 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.6E-22 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 SD28_RS02330 184ee9bc6255ad44186c62f7992938d1 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.6E-22 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 SD28_RS02330 184ee9bc6255ad44186c62f7992938d1 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 23-04-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 SD28_RS02330 184ee9bc6255ad44186c62f7992938d1 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.892 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 SD28_RS02330 184ee9bc6255ad44186c62f7992938d1 92 PANTHER PTHR11880 2 92 3.8E-52 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 SD28_RS02330 184ee9bc6255ad44186c62f7992938d1 92 PIRSF PIRSF002144 1 92 4.2E-32 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 SD28_RS02330 184ee9bc6255ad44186c62f7992938d1 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 2 91 7.3E-44 T 23-04-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 SD28_RS07460 8a02a13e86389ced645eff853b92329d 318 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 70 154 5.0E-6 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS07460 8a02a13e86389ced645eff853b92329d 318 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 242 301 5.5E-25 T 23-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS07460 8a02a13e86389ced645eff853b92329d 318 PANTHER PTHR32108:SF0 23 315 3.6E-60 T 23-04-2016 SD28_RS07460 8a02a13e86389ced645eff853b92329d 318 SUPERFAMILY SSF55257 171 225 9.22E-19 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS07460 8a02a13e86389ced645eff853b92329d 318 SUPERFAMILY SSF55257 5 51 9.22E-19 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS07460 8a02a13e86389ced645eff853b92329d 318 Gene3D G3DSA:3.30.1360.10 9 49 1.1E-20 T 23-04-2016 SD28_RS07460 8a02a13e86389ced645eff853b92329d 318 Gene3D G3DSA:3.30.1360.10 169 220 1.1E-20 T 23-04-2016 SD28_RS07460 8a02a13e86389ced645eff853b92329d 318 SUPERFAMILY SSF47789 244 316 4.32E-23 T 23-04-2016 SD28_RS07460 8a02a13e86389ced645eff853b92329d 318 PANTHER PTHR32108 23 315 3.6E-60 T 23-04-2016 SD28_RS07460 8a02a13e86389ced645eff853b92329d 318 SMART SM00662 21 226 7.0E-13 T 23-04-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS07460 8a02a13e86389ced645eff853b92329d 318 SUPERFAMILY SSF56553 51 170 1.26E-12 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS07460 8a02a13e86389ced645eff853b92329d 318 Gene3D G3DSA:1.10.150.20 240 316 8.4E-31 T 23-04-2016 SD28_RS07460 8a02a13e86389ced645eff853b92329d 318 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 31 220 3.2E-8 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS07460 8a02a13e86389ced645eff853b92329d 318 Gene3D G3DSA:2.170.120.12 51 168 4.8E-13 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS07460 8a02a13e86389ced645eff853b92329d 318 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 250 315 1.0E-25 T 23-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS04710 c16728fda6b1e76110af2c3411183be4 233 Hamap MF_00201 DNA repair protein RecO [recO]. 2 229 13.838 T 23-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 SD28_RS04710 c16728fda6b1e76110af2c3411183be4 233 Pfam PF02565 Recombination protein O C terminal 83 222 3.9E-9 T 23-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 SD28_RS04710 c16728fda6b1e76110af2c3411183be4 233 Pfam PF11967 Recombination protein O N terminal 6 78 5.4E-15 T 23-04-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal SD28_RS04710 c16728fda6b1e76110af2c3411183be4 233 SUPERFAMILY SSF50249 9 78 1.44E-6 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS04710 c16728fda6b1e76110af2c3411183be4 233 PANTHER PTHR33991 2 233 4.1E-17 T 23-04-2016 SD28_RS04710 c16728fda6b1e76110af2c3411183be4 233 TIGRFAM TIGR00613 reco: DNA repair protein RecO 10 143 1.4E-17 T 23-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 SD28_RS02325 69f5d9741afab4879bd3d094c2330b6c 274 Gene3D G3DSA:4.10.950.10 197 274 1.8E-36 T 23-04-2016 IPR014726 Ribosomal protein L2, domain 3 SD28_RS02325 69f5d9741afab4879bd3d094c2330b6c 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 127 251 2.1E-59 T 23-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 SD28_RS02325 69f5d9741afab4879bd3d094c2330b6c 274 Gene3D G3DSA:2.40.50.140 3 112 1.5E-49 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS02325 69f5d9741afab4879bd3d094c2330b6c 274 Gene3D G3DSA:2.30.30.30 119 196 4.9E-34 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 SD28_RS02325 69f5d9741afab4879bd3d094c2330b6c 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 43 118 1.1E-31 T 23-04-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02325 69f5d9741afab4879bd3d094c2330b6c 274 SMART SM01383 43 119 5.3E-43 T 23-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02325 69f5d9741afab4879bd3d094c2330b6c 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 4 274 8.1E-130 T 23-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 SD28_RS02325 69f5d9741afab4879bd3d094c2330b6c 274 SUPERFAMILY SSF50249 4 125 6.17E-46 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS02325 69f5d9741afab4879bd3d094c2330b6c 274 SUPERFAMILY SSF50104 127 273 9.63E-64 T 23-04-2016 IPR008991 Translation protein SH3-like domain SD28_RS02325 69f5d9741afab4879bd3d094c2330b6c 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 2 274 46.241 T 23-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 SD28_RS02325 69f5d9741afab4879bd3d094c2330b6c 274 PANTHER PTHR13691 1 274 1.9E-144 T 23-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02325 69f5d9741afab4879bd3d094c2330b6c 274 PIRSF PIRSF002158 4 274 6.5E-104 T 23-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02325 69f5d9741afab4879bd3d094c2330b6c 274 SMART SM01382 125 253 1.4E-93 T 23-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 SD28_RS02325 69f5d9741afab4879bd3d094c2330b6c 274 ProSitePatterns PS00467 Ribosomal protein L2 signature. 219 230 - T 23-04-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 SD28_RS06105 22e30cfb45e1be198846f09ca71aeb48 373 Gene3D G3DSA:3.40.50.300 6 243 5.3E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06105 22e30cfb45e1be198846f09ca71aeb48 373 Pfam PF08402 TOBE domain 287 371 9.2E-15 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 SD28_RS06105 22e30cfb45e1be198846f09ca71aeb48 373 SUPERFAMILY SSF50331 247 371 1.19E-16 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal SD28_RS06105 22e30cfb45e1be198846f09ca71aeb48 373 PANTHER PTHR24220:SF481 11 303 1.6E-148 T 23-04-2016 SD28_RS06105 22e30cfb45e1be198846f09ca71aeb48 373 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS06105 22e30cfb45e1be198846f09ca71aeb48 373 Pfam PF00005 ABC transporter 27 169 6.6E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS06105 22e30cfb45e1be198846f09ca71aeb48 373 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 41 371 1.4E-118 T 23-04-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 SD28_RS06105 22e30cfb45e1be198846f09ca71aeb48 373 SUPERFAMILY SSF52540 9 248 1.94E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06105 22e30cfb45e1be198846f09ca71aeb48 373 SMART SM00382 35 224 3.2E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS06105 22e30cfb45e1be198846f09ca71aeb48 373 PANTHER PTHR24220 11 303 1.6E-148 T 23-04-2016 SD28_RS03750 203ac07fcf5975d42a3813c9cde4e633 228 SUPERFAMILY SSF53056 1 225 3.66E-65 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 SD28_RS03750 203ac07fcf5975d42a3813c9cde4e633 228 PANTHER PTHR11002 1 217 4.4E-89 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 SD28_RS03750 203ac07fcf5975d42a3813c9cde4e633 228 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 42 49 - T 23-04-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 SD28_RS03750 203ac07fcf5975d42a3813c9cde4e633 228 SMART SM00947 30 202 3.6E-60 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 SD28_RS03750 203ac07fcf5975d42a3813c9cde4e633 228 Gene3D G3DSA:3.40.1050.10 2 227 6.5E-69 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 SD28_RS03750 203ac07fcf5975d42a3813c9cde4e633 228 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 23-04-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 SD28_RS03750 203ac07fcf5975d42a3813c9cde4e633 228 Pfam PF00484 Carbonic anhydrase 37 198 4.4E-44 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 SD28_RS03750 203ac07fcf5975d42a3813c9cde4e633 228 PANTHER PTHR11002:SF20 1 217 4.4E-89 T 23-04-2016 SD28_RS06020 fcdc69080df84a2d5f08bd2fe2129dd6 529 SUPERFAMILY SSF68923 10 213 3.66E-56 T 23-04-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 SD28_RS06020 fcdc69080df84a2d5f08bd2fe2129dd6 529 Pfam PF01293 Phosphoenolpyruvate carboxykinase 17 478 1.0E-130 T 23-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 SD28_RS06020 fcdc69080df84a2d5f08bd2fe2129dd6 529 SUPERFAMILY SSF53795 218 526 3.92E-72 T 23-04-2016 SD28_RS06020 fcdc69080df84a2d5f08bd2fe2129dd6 529 PIRSF PIRSF006294 5 529 6.0E-120 T 23-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 SD28_RS06020 fcdc69080df84a2d5f08bd2fe2129dd6 529 Hamap MF_00453 Phosphoenolpyruvate carboxykinase [ATP] [pckA]. 11 527 30.881 T 23-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 SD28_RS06020 fcdc69080df84a2d5f08bd2fe2129dd6 529 Gene3D G3DSA:3.90.228.20 218 278 1.5E-71 T 23-04-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 SD28_RS06020 fcdc69080df84a2d5f08bd2fe2129dd6 529 Gene3D G3DSA:3.90.228.20 336 517 1.5E-71 T 23-04-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 SD28_RS06020 fcdc69080df84a2d5f08bd2fe2129dd6 529 Gene3D G3DSA:3.40.449.10 17 212 4.7E-56 T 23-04-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 SD28_RS06020 fcdc69080df84a2d5f08bd2fe2129dd6 529 PANTHER PTHR30031:SF0 16 529 5.8E-104 T 23-04-2016 SD28_RS06020 fcdc69080df84a2d5f08bd2fe2129dd6 529 PANTHER PTHR30031 16 529 5.8E-104 T 23-04-2016 SD28_RS00045 bae4ad269e4f48c286f5c11884e67e0c 347 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 4 346 39.323 T 23-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 SD28_RS00045 bae4ad269e4f48c286f5c11884e67e0c 347 Pfam PF00586 AIR synthase related protein, N-terminal domain 73 163 1.4E-15 T 23-04-2016 IPR016188 PurM-like, N-terminal domain SD28_RS00045 bae4ad269e4f48c286f5c11884e67e0c 347 Gene3D G3DSA:3.90.650.10 172 345 8.3E-54 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain SD28_RS00045 bae4ad269e4f48c286f5c11884e67e0c 347 Pfam PF02769 AIR synthase related protein, C-terminal domain 176 345 1.2E-27 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain SD28_RS00045 bae4ad269e4f48c286f5c11884e67e0c 347 PANTHER PTHR10520 4 319 6.1E-141 T 23-04-2016 SD28_RS00045 bae4ad269e4f48c286f5c11884e67e0c 347 Gene3D G3DSA:3.30.1330.10 20 170 1.7E-49 T 23-04-2016 IPR016188 PurM-like, N-terminal domain SD28_RS00045 bae4ad269e4f48c286f5c11884e67e0c 347 SUPERFAMILY SSF56042 171 342 5.06E-50 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain SD28_RS00045 bae4ad269e4f48c286f5c11884e67e0c 347 SUPERFAMILY SSF55326 4 170 1.64E-44 T 23-04-2016 SD28_RS00045 bae4ad269e4f48c286f5c11884e67e0c 347 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 5 340 2.0E-110 T 23-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 SD28_RS02240 9b0e49ea157151968ce1ed297e027b11 166 Pfam PF00186 Dihydrofolate reductase 1 162 1.5E-58 T 23-04-2016 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 SD28_RS02240 9b0e49ea157151968ce1ed297e027b11 166 SUPERFAMILY SSF53597 1 162 2.23E-55 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain SD28_RS02240 9b0e49ea157151968ce1ed297e027b11 166 PIRSF PIRSF000194 1 164 7.1E-53 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 SD28_RS02240 9b0e49ea157151968ce1ed297e027b11 166 PANTHER PTHR22778:SF16 1 163 2.8E-36 T 23-04-2016 SD28_RS02240 9b0e49ea157151968ce1ed297e027b11 166 Gene3D G3DSA:3.40.430.10 1 162 2.0E-58 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain SD28_RS02240 9b0e49ea157151968ce1ed297e027b11 166 PANTHER PTHR22778 1 163 2.8E-36 T 23-04-2016 SD28_RS02240 9b0e49ea157151968ce1ed297e027b11 166 PRINTS PR00070 Dihydrofolate reductase signature 13 23 6.5E-16 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 SD28_RS02240 9b0e49ea157151968ce1ed297e027b11 166 PRINTS PR00070 Dihydrofolate reductase signature 93 107 6.5E-16 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 SD28_RS02240 9b0e49ea157151968ce1ed297e027b11 166 PRINTS PR00070 Dihydrofolate reductase signature 27 35 6.5E-16 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 SD28_RS02240 9b0e49ea157151968ce1ed297e027b11 166 PRINTS PR00070 Dihydrofolate reductase signature 40 51 6.5E-16 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 SD28_RS05945 1cdf5051baed3ed4096b704410d72dc3 848 ProSitePatterns PS01095 Chitinases family 18 active site. 631 639 - T 23-04-2016 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 SD28_RS05945 1cdf5051baed3ed4096b704410d72dc3 848 SUPERFAMILY SSF51445 512 838 2.0E-26 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily SD28_RS05945 1cdf5051baed3ed4096b704410d72dc3 848 SUPERFAMILY SSF51055 163 220 1.44E-16 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS05945 1cdf5051baed3ed4096b704410d72dc3 848 Gene3D G3DSA:3.20.20.80 512 837 1.4E-28 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 SD28_RS05945 1cdf5051baed3ed4096b704410d72dc3 848 SMART SM00495 174 219 1.9E-18 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS05945 1cdf5051baed3ed4096b704410d72dc3 848 SMART SM00495 23 77 3.7 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS05945 1cdf5051baed3ed4096b704410d72dc3 848 Pfam PF02839 Carbohydrate binding domain 175 216 2.1E-15 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS05945 1cdf5051baed3ed4096b704410d72dc3 848 Gene3D G3DSA:2.10.10.20 173 217 1.7E-19 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS00105 5285766be1b5b54bfb43e965cbe6360d 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 40 8.8E-15 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SD28_RS00105 5285766be1b5b54bfb43e965cbe6360d 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 8.8E-15 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SD28_RS00105 5285766be1b5b54bfb43e965cbe6360d 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 57 8.8E-15 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SD28_RS00105 5285766be1b5b54bfb43e965cbe6360d 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 8.8E-15 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SD28_RS00105 5285766be1b5b54bfb43e965cbe6360d 121 Gene3D G3DSA:1.10.10.10 2 96 4.1E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS00105 5285766be1b5b54bfb43e965cbe6360d 121 PANTHER PTHR33154 11 97 3.4E-16 T 23-04-2016 SD28_RS00105 5285766be1b5b54bfb43e965cbe6360d 121 SMART SM00418 8 81 2.6E-17 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SD28_RS00105 5285766be1b5b54bfb43e965cbe6360d 121 Pfam PF01022 Bacterial regulatory protein, arsR family 15 61 5.1E-11 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SD28_RS00105 5285766be1b5b54bfb43e965cbe6360d 121 SUPERFAMILY SSF46785 2 89 5.02E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS01890 8612b6fc764a70f1063c698e22b8d002 440 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 7 426 1.1E-89 T 23-04-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 SD28_RS01890 8612b6fc764a70f1063c698e22b8d002 440 Gene3D G3DSA:3.40.1160.10 101 292 5.0E-51 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 SD28_RS01890 8612b6fc764a70f1063c698e22b8d002 440 Gene3D G3DSA:3.40.1160.10 4 51 5.0E-51 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 SD28_RS01890 8612b6fc764a70f1063c698e22b8d002 440 PANTHER PTHR21499:SF3 7 440 8.8E-72 T 23-04-2016 SD28_RS01890 8612b6fc764a70f1063c698e22b8d002 440 PANTHER PTHR21499 7 440 8.8E-72 T 23-04-2016 SD28_RS01890 8612b6fc764a70f1063c698e22b8d002 440 ProSitePatterns PS00324 Aspartokinase signature. 7 15 - T 23-04-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 SD28_RS01890 8612b6fc764a70f1063c698e22b8d002 440 SUPERFAMILY SSF53633 6 290 6.41E-60 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 SD28_RS01890 8612b6fc764a70f1063c698e22b8d002 440 PIRSF PIRSF000726 3 439 1.3E-76 T 23-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 SD28_RS01890 8612b6fc764a70f1063c698e22b8d002 440 Pfam PF00696 Amino acid kinase family 7 276 2.6E-43 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 SD28_RS02320 c3e31cc52cae0d930c9b1e080b4dec89 99 Gene3D G3DSA:3.30.70.330 6 96 9.3E-31 T 23-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 SD28_RS02320 c3e31cc52cae0d930c9b1e080b4dec89 99 SUPERFAMILY SSF54189 6 97 3.6E-28 T 23-04-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02320 c3e31cc52cae0d930c9b1e080b4dec89 99 PANTHER PTHR11620 13 93 8.8E-25 T 23-04-2016 SD28_RS02320 c3e31cc52cae0d930c9b1e080b4dec89 99 Pfam PF00276 Ribosomal protein L23 10 95 1.8E-30 T 23-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 SD28_RS02320 c3e31cc52cae0d930c9b1e080b4dec89 99 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 21.11 T 23-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 SD28_RS02535 4369338c7ea3f2fcfa6b6dd5cc5d5e04 255 TIGRFAM TIGR00861 MIP: MIP family channel proteins 7 246 1.3E-54 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 SD28_RS02535 4369338c7ea3f2fcfa6b6dd5cc5d5e04 255 SUPERFAMILY SSF81338 3 250 9.29E-70 T 23-04-2016 IPR023271 Aquaporin-like SD28_RS02535 4369338c7ea3f2fcfa6b6dd5cc5d5e04 255 PANTHER PTHR19139 1 254 4.0E-87 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 SD28_RS02535 4369338c7ea3f2fcfa6b6dd5cc5d5e04 255 ProSitePatterns PS00221 MIP family signature. 63 71 - T 23-04-2016 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 SD28_RS02535 4369338c7ea3f2fcfa6b6dd5cc5d5e04 255 PANTHER PTHR19139:SF147 1 254 4.0E-87 T 23-04-2016 SD28_RS02535 4369338c7ea3f2fcfa6b6dd5cc5d5e04 255 Gene3D G3DSA:1.20.1080.10 2 250 7.1E-85 T 23-04-2016 IPR023271 Aquaporin-like SD28_RS02535 4369338c7ea3f2fcfa6b6dd5cc5d5e04 255 PRINTS PR00783 Major intrinsic protein family signature 182 204 2.9E-47 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 SD28_RS02535 4369338c7ea3f2fcfa6b6dd5cc5d5e04 255 PRINTS PR00783 Major intrinsic protein family signature 137 155 2.9E-47 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 SD28_RS02535 4369338c7ea3f2fcfa6b6dd5cc5d5e04 255 PRINTS PR00783 Major intrinsic protein family signature 45 69 2.9E-47 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 SD28_RS02535 4369338c7ea3f2fcfa6b6dd5cc5d5e04 255 PRINTS PR00783 Major intrinsic protein family signature 229 249 2.9E-47 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 SD28_RS02535 4369338c7ea3f2fcfa6b6dd5cc5d5e04 255 PRINTS PR00783 Major intrinsic protein family signature 82 101 2.9E-47 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 SD28_RS02535 4369338c7ea3f2fcfa6b6dd5cc5d5e04 255 PRINTS PR00783 Major intrinsic protein family signature 3 22 2.9E-47 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 SD28_RS02535 4369338c7ea3f2fcfa6b6dd5cc5d5e04 255 Pfam PF00230 Major intrinsic protein 2 246 4.2E-46 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 PANTHER PTHR23389 17 543 1.1E-168 T 23-04-2016 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 Gene3D G3DSA:1.10.150.20 446 514 2.8E-26 T 23-04-2016 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 Gene3D G3DSA:2.40.50.140 331 400 2.8E-32 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 SMART SM00292 605 680 2.4E-9 T 23-04-2016 IPR001357 BRCT domain SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 19 329 7.8E-114 T 23-04-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 Gene3D G3DSA:3.30.470.30 129 262 2.8E-45 T 23-04-2016 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 342 357 - T 23-04-2016 IPR033136 NAD-dependent DNA ligase, conserved site SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 Pfam PF12826 Helix-hairpin-helix motif 521 584 2.2E-16 T 23-04-2016 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 SUPERFAMILY SSF52113 606 678 3.49E-19 T 23-04-2016 IPR001357 BRCT domain SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 SMART SM00532 18 459 3.0E-211 T 23-04-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 334 408 5.6E-33 T 23-04-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 Hamap MF_01588 DNA ligase [ligA]. 17 679 52.298 T 23-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 SUPERFAMILY SSF56091 16 327 2.88E-104 T 23-04-2016 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 PANTHER PTHR23389:SF9 17 543 1.1E-168 T 23-04-2016 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 Gene3D G3DSA:3.40.50.10190 606 679 2.1E-22 T 23-04-2016 IPR001357 BRCT domain SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 SMART SM00278 491 510 400.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 SMART SM00278 457 476 270.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 SMART SM00278 555 574 23.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 SUPERFAMILY SSF50249 329 409 1.22E-26 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 418 445 5.3E-9 T 23-04-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 SUPERFAMILY SSF47781 415 594 5.93E-53 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 26 675 2.0E-237 T 23-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 Gene3D G3DSA:1.10.150.20 515 594 3.6E-22 T 23-04-2016 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 PIRSF PIRSF001604 12 680 2.9E-237 T 23-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 607 676 1.1E-14 T 23-04-2016 IPR001357 BRCT domain SD28_RS03105 f0cfc6a7d5b5989ba2edb9aa355adb20 680 Gene3D G3DSA:1.10.287.610 11 82 9.6E-17 T 23-04-2016 SD28_RS00400 bc672998717a5e27b1225be40b6c26bd 134 Pfam PF04480 Protein of unknown function (DUF559) 10 110 1.7E-29 T 23-04-2016 IPR007569 Domain of unknown function DUF559 SD28_RS00400 bc672998717a5e27b1225be40b6c26bd 134 PANTHER PTHR38590 1 125 5.3E-29 T 23-04-2016 SD28_RS00400 bc672998717a5e27b1225be40b6c26bd 134 SUPERFAMILY SSF52980 10 120 1.07E-10 T 23-04-2016 IPR011335 Restriction endonuclease type II-like SD28_RS00400 bc672998717a5e27b1225be40b6c26bd 134 PANTHER PTHR38590:SF1 1 125 5.3E-29 T 23-04-2016 SD28_RS07105 bc672998717a5e27b1225be40b6c26bd 134 Pfam PF04480 Protein of unknown function (DUF559) 10 110 1.7E-29 T 23-04-2016 IPR007569 Domain of unknown function DUF559 SD28_RS07105 bc672998717a5e27b1225be40b6c26bd 134 PANTHER PTHR38590 1 125 5.3E-29 T 23-04-2016 SD28_RS07105 bc672998717a5e27b1225be40b6c26bd 134 SUPERFAMILY SSF52980 10 120 1.07E-10 T 23-04-2016 IPR011335 Restriction endonuclease type II-like SD28_RS07105 bc672998717a5e27b1225be40b6c26bd 134 PANTHER PTHR38590:SF1 1 125 5.3E-29 T 23-04-2016 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 Gene3D G3DSA:3.50.50.60 229 312 2.7E-12 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 Gene3D G3DSA:3.50.50.60 2 117 1.2E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PANTHER PTHR22912 1 313 3.7E-160 T 23-04-2016 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 105 113 1.2E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 127 139 1.2E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 142 166 1.2E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 236 257 1.2E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 1.2E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 197 213 1.2E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 39 54 1.2E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 60 70 1.2E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 274 292 1.2E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 300 4.1E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 134 154 - T 23-04-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 SUPERFAMILY SSF51905 1 311 3.24E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 Gene3D G3DSA:3.50.50.60 118 228 1.9E-32 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 6 311 2.6E-123 T 23-04-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 286 2.8E-40 T 23-04-2016 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 2.8E-40 T 23-04-2016 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 2.8E-40 T 23-04-2016 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.8E-40 T 23-04-2016 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 104 122 2.8E-40 T 23-04-2016 SD28_RS06990 53cfd3cd860eddccaf7b1fde7813b372 318 PANTHER PTHR22912:SF48 1 313 3.7E-160 T 23-04-2016 SD28_RS05710 54e01403ac05aa4a7c7399d0a190ace2 449 Pfam PF00083 Sugar (and other) transporter 15 447 3.0E-91 T 23-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 SD28_RS05710 54e01403ac05aa4a7c7399d0a190ace2 449 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 5 443 1.2E-83 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS05710 54e01403ac05aa4a7c7399d0a190ace2 449 ProSitePatterns PS00216 Sugar transport proteins signature 1. 67 84 - T 23-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 SD28_RS05710 54e01403ac05aa4a7c7399d0a190ace2 449 PANTHER PTHR23500 9 447 4.5E-126 T 23-04-2016 SD28_RS05710 54e01403ac05aa4a7c7399d0a190ace2 449 SUPERFAMILY SSF103473 5 444 2.35E-66 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS05710 54e01403ac05aa4a7c7399d0a190ace2 449 ProSitePatterns PS00217 Sugar transport proteins signature 2. 109 134 - T 23-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 SD28_RS05710 54e01403ac05aa4a7c7399d0a190ace2 449 PRINTS PR00171 Sugar transporter signature 371 383 2.1E-20 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS05710 54e01403ac05aa4a7c7399d0a190ace2 449 PRINTS PR00171 Sugar transporter signature 258 268 2.1E-20 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS05710 54e01403ac05aa4a7c7399d0a190ace2 449 PRINTS PR00171 Sugar transporter signature 21 31 2.1E-20 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS05710 54e01403ac05aa4a7c7399d0a190ace2 449 PRINTS PR00171 Sugar transporter signature 348 369 2.1E-20 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS05710 54e01403ac05aa4a7c7399d0a190ace2 449 PRINTS PR00171 Sugar transporter signature 104 123 2.1E-20 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS05710 54e01403ac05aa4a7c7399d0a190ace2 449 Gene3D G3DSA:1.20.1250.20 243 446 1.2E-21 T 23-04-2016 SD28_RS05710 54e01403ac05aa4a7c7399d0a190ace2 449 Gene3D G3DSA:1.20.1250.20 15 192 3.4E-27 T 23-04-2016 SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 PANTHER PTHR24322 10 138 8.3E-63 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 PANTHER PTHR24322 154 186 8.3E-63 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 2.5E-13 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.5E-13 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.5E-13 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 244 1.1E-64 T 23-04-2016 SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 Gene3D G3DSA:3.40.50.720 2 246 1.1E-87 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 SUPERFAMILY SSF51735 4 246 2.22E-84 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 PANTHER PTHR24322:SF635 10 138 8.3E-63 T 23-04-2016 SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 PANTHER PTHR24322:SF635 154 186 8.3E-63 T 23-04-2016 SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 3.8E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 3.8E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 3.8E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 3.8E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.8E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.8E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 190 3.8E-5 T 23-04-2016 SD28_RS06035 2aa06d4ace7ba2e358b5aad70d8a86ae 247 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 245 1.5E-100 T 23-04-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 SUPERFAMILY SSF54980 614 701 7.19E-30 T 23-04-2016 IPR009022 Elongation factor G, III-V domain SD28_RS02300 1774235ca335d1b6c59843671865236d 704 PANTHER PTHR23115:SF66 308 702 0.0 T 23-04-2016 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 PANTHER PTHR23115:SF66 2 184 0.0 T 23-04-2016 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 SMART SM00889 485 609 4.0E-70 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 SMART SM00838 611 698 3.7E-57 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain SD28_RS02300 1774235ca335d1b6c59843671865236d 704 SUPERFAMILY SSF54211 487 609 4.8E-41 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS02300 1774235ca335d1b6c59843671865236d 704 Gene3D G3DSA:2.40.30.10 310 410 1.1E-38 T 23-04-2016 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 Pfam PF00009 Elongation factor Tu GTP binding domain 9 287 3.3E-67 T 23-04-2016 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site SD28_RS02300 1774235ca335d1b6c59843671865236d 704 Gene3D G3DSA:3.40.50.300 5 293 4.3E-107 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02300 1774235ca335d1b6c59843671865236d 704 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 3.8E-34 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 PRINTS PR00315 GTP-binding elongation factor signature 85 95 2.9E-17 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 PRINTS PR00315 GTP-binding elongation factor signature 137 146 2.9E-17 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 PRINTS PR00315 GTP-binding elongation factor signature 12 25 2.9E-17 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.9E-17 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 PRINTS PR00315 GTP-binding elongation factor signature 101 112 2.9E-17 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 SUPERFAMILY SSF52540 6 287 7.03E-108 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02300 1774235ca335d1b6c59843671865236d 704 SUPERFAMILY SSF54980 407 485 1.15E-25 T 23-04-2016 IPR009022 Elongation factor G, III-V domain SD28_RS02300 1774235ca335d1b6c59843671865236d 704 SUPERFAMILY SSF50447 271 409 9.94E-36 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain SD28_RS02300 1774235ca335d1b6c59843671865236d 704 Pfam PF03764 Elongation factor G, domain IV 484 609 1.3E-44 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 703 0.0 T 23-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 PANTHER PTHR23115 261 289 0.0 T 23-04-2016 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 PANTHER PTHR23115 2 184 0.0 T 23-04-2016 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 Hamap MF_00054_B Elongation factor G [fusA]. 6 702 110.446 T 23-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 PANTHER PTHR23115 308 702 0.0 T 23-04-2016 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 Pfam PF03144 Elongation factor Tu domain 2 329 396 1.5E-18 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 Gene3D G3DSA:3.30.230.10 489 613 4.2E-46 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SD28_RS02300 1774235ca335d1b6c59843671865236d 704 Gene3D G3DSA:3.30.70.870 411 485 5.0E-40 T 23-04-2016 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 Gene3D G3DSA:3.30.70.240 614 701 3.1E-33 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain SD28_RS02300 1774235ca335d1b6c59843671865236d 704 Pfam PF14492 Elongation Factor G, domain II 409 482 2.0E-35 T 23-04-2016 IPR009022 Elongation factor G, III-V domain SD28_RS02300 1774235ca335d1b6c59843671865236d 704 PANTHER PTHR23115:SF66 261 289 0.0 T 23-04-2016 SD28_RS02300 1774235ca335d1b6c59843671865236d 704 Pfam PF00679 Elongation factor G C-terminus 612 697 1.1E-31 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain SD28_RS03440 693a80262030596819c47e50f860873f 306 PIRSF PIRSF004486 1 306 3.6E-103 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS03440 693a80262030596819c47e50f860873f 306 Gene3D G3DSA:3.40.50.150 2 106 7.3E-48 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS03440 693a80262030596819c47e50f860873f 306 Gene3D G3DSA:3.40.50.150 212 306 7.3E-48 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS03440 693a80262030596819c47e50f860873f 306 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 2 306 35.899 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS03440 693a80262030596819c47e50f860873f 306 Pfam PF01795 MraW methylase family 2 305 1.2E-103 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS03440 693a80262030596819c47e50f860873f 306 Gene3D G3DSA:1.10.150.170 109 211 3.6E-35 T 23-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS03440 693a80262030596819c47e50f860873f 306 PANTHER PTHR11265:SF0 1 306 2.5E-122 T 23-04-2016 SD28_RS03440 693a80262030596819c47e50f860873f 306 SUPERFAMILY SSF53335 1 109 5.2E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS03440 693a80262030596819c47e50f860873f 306 SUPERFAMILY SSF53335 209 306 5.2E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS03440 693a80262030596819c47e50f860873f 306 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 2 305 2.1E-109 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS03440 693a80262030596819c47e50f860873f 306 PANTHER PTHR11265 1 306 2.5E-122 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS03440 693a80262030596819c47e50f860873f 306 SUPERFAMILY SSF81799 110 209 1.83E-31 T 23-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS04760 59cd9e72daa8e36ca674fd2451a0f4ad 612 SUPERFAMILY SSF82771 22 104 2.48E-23 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily SD28_RS04760 59cd9e72daa8e36ca674fd2451a0f4ad 612 PANTHER PTHR30562 11 611 2.2E-213 T 23-04-2016 SD28_RS04760 59cd9e72daa8e36ca674fd2451a0f4ad 612 SUPERFAMILY SSF47781 518 612 4.77E-16 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 SD28_RS04760 59cd9e72daa8e36ca674fd2451a0f4ad 612 SMART SM00465 21 102 7.9E-23 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily SD28_RS04760 59cd9e72daa8e36ca674fd2451a0f4ad 612 Pfam PF01541 GIY-YIG catalytic domain 22 97 2.7E-14 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily SD28_RS04760 59cd9e72daa8e36ca674fd2451a0f4ad 612 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 11 592 2.9E-169 T 23-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 SD28_RS04760 59cd9e72daa8e36ca674fd2451a0f4ad 612 Pfam PF02151 UvrB/uvrC motif 209 242 1.9E-10 T 23-04-2016 IPR001943 UVR domain GO:0005515 SD28_RS04760 59cd9e72daa8e36ca674fd2451a0f4ad 612 SUPERFAMILY SSF46600 196 247 2.22E-12 T 23-04-2016 IPR001943 UVR domain GO:0005515 SD28_RS04760 59cd9e72daa8e36ca674fd2451a0f4ad 612 Pfam PF14520 Helix-hairpin-helix domain 562 608 1.5E-7 T 23-04-2016 SD28_RS04760 59cd9e72daa8e36ca674fd2451a0f4ad 612 PANTHER PTHR30562:SF1 11 611 2.2E-213 T 23-04-2016 SD28_RS04760 59cd9e72daa8e36ca674fd2451a0f4ad 612 Gene3D G3DSA:4.10.860.10 187 247 1.6E-15 T 23-04-2016 IPR001943 UVR domain GO:0005515 SD28_RS04760 59cd9e72daa8e36ca674fd2451a0f4ad 612 Gene3D G3DSA:3.40.1440.10 21 101 3.1E-10 T 23-04-2016 IPR027299 GIY-YIG domain SD28_RS04760 59cd9e72daa8e36ca674fd2451a0f4ad 612 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 390 545 2.8E-39 T 23-04-2016 IPR001162 UvrC family homology region SD28_RS04760 59cd9e72daa8e36ca674fd2451a0f4ad 612 Gene3D G3DSA:1.10.150.20 559 612 1.3E-20 T 23-04-2016 SD28_RS04760 59cd9e72daa8e36ca674fd2451a0f4ad 612 Hamap MF_00203 UvrABC system protein C [uvrC]. 8 610 25.892 T 23-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 SD28_RS03430 ce1ca0d24c2f9ca36e18fad55566d43c 289 SUPERFAMILY SSF57716 237 289 3.42E-16 T 23-04-2016 SD28_RS03430 ce1ca0d24c2f9ca36e18fad55566d43c 289 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 150 237 6.4E-23 T 23-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 SD28_RS03430 ce1ca0d24c2f9ca36e18fad55566d43c 289 ProSitePatterns PS01242 Zinc finger FPG-type signature. 264 288 - T 23-04-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 SD28_RS03430 ce1ca0d24c2f9ca36e18fad55566d43c 289 SUPERFAMILY SSF81624 17 158 3.27E-33 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 SD28_RS03430 ce1ca0d24c2f9ca36e18fad55566d43c 289 Gene3D G3DSA:3.20.190.10 17 137 6.2E-31 T 23-04-2016 SD28_RS03430 ce1ca0d24c2f9ca36e18fad55566d43c 289 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 16 289 39.159 T 23-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 SD28_RS03430 ce1ca0d24c2f9ca36e18fad55566d43c 289 Pfam PF06827 Zinc finger found in FPG and IleRS 262 289 9.1E-9 T 23-04-2016 IPR010663 Zinc finger, FPG/IleRS-type SD28_RS03430 ce1ca0d24c2f9ca36e18fad55566d43c 289 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 16 288 5.5E-88 T 23-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 SD28_RS03430 ce1ca0d24c2f9ca36e18fad55566d43c 289 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 16 132 2.2E-28 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 SD28_RS03430 ce1ca0d24c2f9ca36e18fad55566d43c 289 SUPERFAMILY SSF46946 150 242 2.36E-24 T 23-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 SD28_RS03430 ce1ca0d24c2f9ca36e18fad55566d43c 289 SMART SM01232 149 241 5.2E-35 T 23-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 SD28_RS03430 ce1ca0d24c2f9ca36e18fad55566d43c 289 Gene3D G3DSA:1.10.8.50 150 289 9.8E-47 T 23-04-2016 SD28_RS03430 ce1ca0d24c2f9ca36e18fad55566d43c 289 SMART SM00898 17 133 4.9E-37 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 SD28_RS03430 ce1ca0d24c2f9ca36e18fad55566d43c 289 PANTHER PTHR22993:SF15 1 289 5.0E-99 T 23-04-2016 SD28_RS03430 ce1ca0d24c2f9ca36e18fad55566d43c 289 PANTHER PTHR22993 1 289 5.0E-99 T 23-04-2016 SD28_RS06325 93c776b0b4fb2eb58c03eadf4483c440 283 Pfam PF01478 Type IV leader peptidase family 131 238 4.8E-22 T 23-04-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 SD28_RS06325 93c776b0b4fb2eb58c03eadf4483c440 283 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 13 118 9.3E-28 T 23-04-2016 IPR010627 Peptidase A24A, N-terminal KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- SD28_RS06325 93c776b0b4fb2eb58c03eadf4483c440 283 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 196 206 8.0E-18 T 23-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- SD28_RS06325 93c776b0b4fb2eb58c03eadf4483c440 283 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 139 156 8.0E-18 T 23-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- SD28_RS06325 93c776b0b4fb2eb58c03eadf4483c440 283 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 219 234 8.0E-18 T 23-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- SD28_RS06325 93c776b0b4fb2eb58c03eadf4483c440 283 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 207 218 8.0E-18 T 23-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- SD28_RS06325 93c776b0b4fb2eb58c03eadf4483c440 283 PANTHER PTHR30487:SF0 1 31 9.0E-81 T 23-04-2016 SD28_RS06325 93c776b0b4fb2eb58c03eadf4483c440 283 PANTHER PTHR30487:SF0 53 275 9.0E-81 T 23-04-2016 SD28_RS06325 93c776b0b4fb2eb58c03eadf4483c440 283 PANTHER PTHR30487 1 31 9.0E-81 T 23-04-2016 SD28_RS06325 93c776b0b4fb2eb58c03eadf4483c440 283 PANTHER PTHR30487 53 275 9.0E-81 T 23-04-2016 SD28_RS03035 ab4bf038da5044d9b0de4e14d69b7287 74 SMART SM00899 1 72 7.3E-6 T 23-04-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 SD28_RS03035 ab4bf038da5044d9b0de4e14d69b7287 74 SUPERFAMILY SSF50037 3 72 9.16E-12 T 23-04-2016 IPR008988 Transcriptional repressor, C-terminal SD28_RS03035 ab4bf038da5044d9b0de4e14d69b7287 74 Pfam PF04023 FeoA domain 4 63 1.7E-6 T 23-04-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 SD28_RS00030 2503c6dfd5becc680a9aebcde851153f 163 PANTHER PTHR23046:SF2 1 163 2.3E-86 T 23-04-2016 SD28_RS00030 2503c6dfd5becc680a9aebcde851153f 163 SMART SM01001 3 154 3.4E-100 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 SD28_RS00030 2503c6dfd5becc680a9aebcde851153f 163 SUPERFAMILY SSF52255 5 161 1.57E-66 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 SD28_RS00030 2503c6dfd5becc680a9aebcde851153f 163 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 5 159 3.0E-66 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 SD28_RS00030 2503c6dfd5becc680a9aebcde851153f 163 PANTHER PTHR23046 1 163 2.3E-86 T 23-04-2016 SD28_RS00030 2503c6dfd5becc680a9aebcde851153f 163 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 5 158 32.121 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 SD28_RS00030 2503c6dfd5becc680a9aebcde851153f 163 Pfam PF00731 AIR carboxylase 4 152 2.7E-65 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 SD28_RS00030 2503c6dfd5becc680a9aebcde851153f 163 PIRSF PIRSF001338 1 163 1.8E-68 T 23-04-2016 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE GO:0006189|GO:0034023 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234|UniPathway: UPA00074 SD28_RS00030 2503c6dfd5becc680a9aebcde851153f 163 Gene3D G3DSA:3.40.50.7700 2 160 6.8E-75 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 SD28_RS06025 8a79d83a1c6b6e5ad6349ecfe27f58d2 419 PANTHER PTHR11712 4 418 1.7E-190 T 23-04-2016 SD28_RS06025 8a79d83a1c6b6e5ad6349ecfe27f58d2 419 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 262 376 3.8E-34 T 23-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal SD28_RS06025 8a79d83a1c6b6e5ad6349ecfe27f58d2 419 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 162 178 - T 23-04-2016 IPR018201 Beta-ketoacyl synthase, active site SD28_RS06025 8a79d83a1c6b6e5ad6349ecfe27f58d2 419 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 5 254 3.1E-56 T 23-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal SD28_RS06025 8a79d83a1c6b6e5ad6349ecfe27f58d2 419 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 5 417 7.4E-186 T 23-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 SD28_RS06025 8a79d83a1c6b6e5ad6349ecfe27f58d2 419 SUPERFAMILY SSF53901 221 418 2.8E-66 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 SD28_RS06025 8a79d83a1c6b6e5ad6349ecfe27f58d2 419 Gene3D G3DSA:3.40.47.10 3 267 8.9E-71 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 SD28_RS06025 8a79d83a1c6b6e5ad6349ecfe27f58d2 419 SMART SM00825 Beta-ketoacyl synthase 7 419 8.5E-16 T 23-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain SD28_RS06025 8a79d83a1c6b6e5ad6349ecfe27f58d2 419 PIRSF PIRSF000447 2 419 5.6E-173 T 23-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 SD28_RS06025 8a79d83a1c6b6e5ad6349ecfe27f58d2 419 Gene3D G3DSA:3.40.47.10 270 418 9.9E-55 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 SD28_RS06025 8a79d83a1c6b6e5ad6349ecfe27f58d2 419 SUPERFAMILY SSF53901 5 259 2.62E-72 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 SD28_RS00855 896be6b4285c5bcb13daa68678c17764 935 PANTHER PTHR23152:SF4 4 935 0.0 T 23-04-2016 SD28_RS00855 896be6b4285c5bcb13daa68678c17764 935 Pfam PF02779 Transketolase, pyrimidine binding domain 594 789 2.7E-59 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain SD28_RS00855 896be6b4285c5bcb13daa68678c17764 935 Pfam PF00676 Dehydrogenase E1 component 208 515 1.5E-52 T 23-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 SD28_RS00855 896be6b4285c5bcb13daa68678c17764 935 SMART SM00861 594 789 2.9E-48 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain SD28_RS00855 896be6b4285c5bcb13daa68678c17764 935 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 19 932 0.0 T 23-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 SD28_RS00855 896be6b4285c5bcb13daa68678c17764 935 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 793 933 5.2E-43 T 23-04-2016 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 SD28_RS00855 896be6b4285c5bcb13daa68678c17764 935 PIRSF PIRSF000157 1 935 0.0 T 23-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 SD28_RS00855 896be6b4285c5bcb13daa68678c17764 935 SUPERFAMILY SSF52518 576 796 1.86E-45 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS00855 896be6b4285c5bcb13daa68678c17764 935 Gene3D G3DSA:3.40.50.970 161 519 3.6E-73 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS00855 896be6b4285c5bcb13daa68678c17764 935 Gene3D G3DSA:3.40.50.970 594 792 9.8E-23 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS00855 896be6b4285c5bcb13daa68678c17764 935 SUPERFAMILY SSF52518 164 519 5.04E-83 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS00855 896be6b4285c5bcb13daa68678c17764 935 PANTHER PTHR23152 4 935 0.0 T 23-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 SD28_RS02925 f148656f752e398ba43f507856c5e764 170 Gene3D G3DSA:3.40.630.30 1 146 2.7E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase SD28_RS02925 f148656f752e398ba43f507856c5e764 170 Pfam PF13508 Acetyltransferase (GNAT) domain 46 126 3.1E-10 T 23-04-2016 IPR000182 GNAT domain GO:0008080 SD28_RS02925 f148656f752e398ba43f507856c5e764 170 PANTHER PTHR23091:SF237 1 149 5.4E-26 T 23-04-2016 SD28_RS02925 f148656f752e398ba43f507856c5e764 170 PANTHER PTHR23091 1 149 5.4E-26 T 23-04-2016 SD28_RS02925 f148656f752e398ba43f507856c5e764 170 SUPERFAMILY SSF55729 1 133 1.57E-27 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase SD28_RS07310 bac85285ed4935ee729cc6be6eb4e487 347 Pfam PF00293 NUDIX domain 206 325 1.4E-15 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 SD28_RS07310 bac85285ed4935ee729cc6be6eb4e487 347 Gene3D G3DSA:3.90.79.10 193 343 4.6E-29 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 SD28_RS07310 bac85285ed4935ee729cc6be6eb4e487 347 PANTHER PTHR21342 1 332 1.4E-64 T 23-04-2016 SD28_RS07310 bac85285ed4935ee729cc6be6eb4e487 347 PANTHER PTHR21342:SF0 1 332 1.4E-64 T 23-04-2016 SD28_RS07310 bac85285ed4935ee729cc6be6eb4e487 347 Gene3D G3DSA:3.40.50.620 1 191 3.0E-34 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS07310 bac85285ed4935ee729cc6be6eb4e487 347 PRINTS PR00502 NUDIX hydrolase family signature 244 259 4.2E-5 T 23-04-2016 IPR020476 NUDIX hydrolase SD28_RS07310 bac85285ed4935ee729cc6be6eb4e487 347 PRINTS PR00502 NUDIX hydrolase family signature 230 244 4.2E-5 T 23-04-2016 IPR020476 NUDIX hydrolase SD28_RS07310 bac85285ed4935ee729cc6be6eb4e487 347 Pfam PF01467 Cytidylyltransferase-like 6 75 4.6E-7 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 SD28_RS07310 bac85285ed4935ee729cc6be6eb4e487 347 ProSitePatterns PS00893 Nudix box signature. 235 256 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 SD28_RS07310 bac85285ed4935ee729cc6be6eb4e487 347 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 59 5.9E-9 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 SD28_RS07310 bac85285ed4935ee729cc6be6eb4e487 347 SUPERFAMILY SSF52374 4 151 3.44E-19 T 23-04-2016 SD28_RS07310 bac85285ed4935ee729cc6be6eb4e487 347 SUPERFAMILY SSF55811 195 341 1.62E-23 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 SD28_RS03195 53d327046cc4d910af38f2d2f0f757da 334 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 334 1.9E-93 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 SD28_RS03195 53d327046cc4d910af38f2d2f0f757da 334 Gene3D G3DSA:1.10.240.10 214 301 1.1E-30 T 23-04-2016 SD28_RS03195 53d327046cc4d910af38f2d2f0f757da 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 1.1E-22 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 SD28_RS03195 53d327046cc4d910af38f2d2f0f757da 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 152 173 1.1E-22 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 SD28_RS03195 53d327046cc4d910af38f2d2f0f757da 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 68 87 1.1E-22 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 SD28_RS03195 53d327046cc4d910af38f2d2f0f757da 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 204 214 1.1E-22 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 SD28_RS03195 53d327046cc4d910af38f2d2f0f757da 334 PANTHER PTHR10055 6 334 7.1E-150 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 SD28_RS03195 53d327046cc4d910af38f2d2f0f757da 334 SUPERFAMILY SSF52374 5 334 1.5E-81 T 23-04-2016 SD28_RS03195 53d327046cc4d910af38f2d2f0f757da 334 Gene3D G3DSA:3.40.50.620 3 213 1.3E-74 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS03195 53d327046cc4d910af38f2d2f0f757da 334 Pfam PF00579 tRNA synthetases class I (W and Y) 5 289 4.0E-59 T 23-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS03195 53d327046cc4d910af38f2d2f0f757da 334 PANTHER PTHR10055:SF11 6 334 7.1E-150 T 23-04-2016 SD28_RS03195 53d327046cc4d910af38f2d2f0f757da 334 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 21 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS03945 796fd880052e99e11159bce65dcb4b69 307 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 25 43 - T 23-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 SD28_RS03945 796fd880052e99e11159bce65dcb4b69 307 Gene3D G3DSA:3.40.50.1100 144 305 6.2E-47 T 23-04-2016 SD28_RS03945 796fd880052e99e11159bce65dcb4b69 307 Gene3D G3DSA:3.40.50.1100 2 34 6.2E-47 T 23-04-2016 SD28_RS03945 796fd880052e99e11159bce65dcb4b69 307 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 4 285 1.2E-56 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme SD28_RS03945 796fd880052e99e11159bce65dcb4b69 307 Gene3D G3DSA:3.40.50.1100 35 138 1.8E-25 T 23-04-2016 SD28_RS03945 796fd880052e99e11159bce65dcb4b69 307 PANTHER PTHR10314 1 306 9.4E-71 T 23-04-2016 SD28_RS03945 796fd880052e99e11159bce65dcb4b69 307 PANTHER PTHR10314:SF35 1 306 9.4E-71 T 23-04-2016 SD28_RS03945 796fd880052e99e11159bce65dcb4b69 307 SUPERFAMILY SSF53686 2 305 9.3E-66 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 Pfam PF00623 RNA polymerase Rpb1, domain 2 390 483 3.1E-27 T 23-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 Pfam PF00623 RNA polymerase Rpb1, domain 2 342 383 1.3E-7 T 23-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 18 1355 0.0 T 23-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 Pfam PF04983 RNA polymerase Rpb1, domain 3 487 642 6.8E-28 T 23-04-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 PANTHER PTHR19376 568 939 0.0 T 23-04-2016 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 PANTHER PTHR19376 1164 1250 0.0 T 23-04-2016 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 PANTHER PTHR19376 959 1144 0.0 T 23-04-2016 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 PANTHER PTHR19376 2 549 0.0 T 23-04-2016 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 PANTHER PTHR19376 1291 1351 0.0 T 23-04-2016 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 Hamap MF_01323 DNA-directed RNA polymerase subunit gamma [rpoC1]. 11 608 32.443 T 23-04-2016 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 PANTHER PTHR19376:SF32 1164 1250 0.0 T 23-04-2016 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 PANTHER PTHR19376:SF32 959 1144 0.0 T 23-04-2016 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 PANTHER PTHR19376:SF32 2 549 0.0 T 23-04-2016 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 PANTHER PTHR19376:SF32 1291 1351 0.0 T 23-04-2016 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 Gene3D G3DSA:2.40.50.100 1144 1198 5.9E-4 T 23-04-2016 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 Pfam PF05000 RNA polymerase Rpb1, domain 4 671 747 2.2E-18 T 23-04-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 Pfam PF04997 RNA polymerase Rpb1, domain 1 13 340 3.0E-88 T 23-04-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 Pfam PF04998 RNA polymerase Rpb1, domain 5 763 1303 3.2E-67 T 23-04-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 Gene3D G3DSA:2.40.40.20 415 487 2.5E-37 T 23-04-2016 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 Gene3D G3DSA:2.40.40.20 347 374 2.5E-37 T 23-04-2016 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 13 1364 10.318 T 23-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 SUPERFAMILY SSF64484 13 939 0.0 T 23-04-2016 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 SUPERFAMILY SSF64484 1120 1351 0.0 T 23-04-2016 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 SMART SM00663 233 512 3.2E-180 T 23-04-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02610 4e2109ee1ea7ccb1c3fdb4b35a9f1578 1417 PANTHER PTHR19376:SF32 568 939 0.0 T 23-04-2016 SD28_RS03265 3ff6af91621a76ab2155364423d905f2 180 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 58 74 - T 23-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 SD28_RS03265 3ff6af91621a76ab2155364423d905f2 180 Gene3D G3DSA:3.30.1130.10 52 177 3.4E-58 T 23-04-2016 SD28_RS03265 3ff6af91621a76ab2155364423d905f2 180 Gene3D G3DSA:1.10.286.10 1 48 1.9E-18 T 23-04-2016 SD28_RS03265 3ff6af91621a76ab2155364423d905f2 180 SUPERFAMILY SSF55620 1 177 2.59E-73 T 23-04-2016 SD28_RS03265 3ff6af91621a76ab2155364423d905f2 180 PANTHER PTHR11109 1 177 1.5E-99 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 SD28_RS03265 3ff6af91621a76ab2155364423d905f2 180 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 1 179 34.372 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 SD28_RS03265 3ff6af91621a76ab2155364423d905f2 180 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 1 177 1.0E-72 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 SD28_RS03265 3ff6af91621a76ab2155364423d905f2 180 Pfam PF01227 GTP cyclohydrolase I 2 177 7.4E-72 T 23-04-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 SD28_RS06595 82825b812de53bdcee5c1b7505ee9089 209 Gene3D G3DSA:3.30.70.20 14 84 5.5E-6 T 23-04-2016 SD28_RS06595 82825b812de53bdcee5c1b7505ee9089 209 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 5 139 1.2E-54 T 23-04-2016 IPR010207 Electron transport complex, RnfB/RsxB GO:0009055|GO:0051536 SD28_RS06595 82825b812de53bdcee5c1b7505ee9089 209 PANTHER PTHR11938:SF64 5 136 7.8E-43 T 23-04-2016 SD28_RS06595 82825b812de53bdcee5c1b7505ee9089 209 Pfam PF04060 Putative Fe-S cluster 12 42 1.9E-9 T 23-04-2016 IPR007202 4Fe-4S domain GO:0051536 SD28_RS06595 82825b812de53bdcee5c1b7505ee9089 209 PANTHER PTHR11938 5 136 7.8E-43 T 23-04-2016 SD28_RS06595 82825b812de53bdcee5c1b7505ee9089 209 SUPERFAMILY SSF54862 8 136 2.56E-25 T 23-04-2016 SD28_RS06595 82825b812de53bdcee5c1b7505ee9089 209 Gene3D G3DSA:3.30.70.20 85 132 8.6E-16 T 23-04-2016 SD28_RS06595 82825b812de53bdcee5c1b7505ee9089 209 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 83 94 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SD28_RS06595 82825b812de53bdcee5c1b7505ee9089 209 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 113 124 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SD28_RS06595 82825b812de53bdcee5c1b7505ee9089 209 Pfam PF14697 4Fe-4S dicluster domain 76 129 8.9E-17 T 23-04-2016 SD28_RS06955 56e7a32d9b9f6b96ac2774f6fcb26ffe 269 PIRSF PIRSF028756 2 267 2.7E-122 T 23-04-2016 IPR016898 Polyphosphate kinase 2 SD28_RS06955 56e7a32d9b9f6b96ac2774f6fcb26ffe 269 PANTHER PTHR34383 19 262 2.1E-135 T 23-04-2016 SD28_RS06955 56e7a32d9b9f6b96ac2774f6fcb26ffe 269 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 24 249 9.8E-115 T 23-04-2016 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 SD28_RS06955 56e7a32d9b9f6b96ac2774f6fcb26ffe 269 Gene3D G3DSA:3.40.50.300 8 262 4.4E-107 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06955 56e7a32d9b9f6b96ac2774f6fcb26ffe 269 SUPERFAMILY SSF52540 55 242 2.25E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06955 56e7a32d9b9f6b96ac2774f6fcb26ffe 269 PANTHER PTHR34383:SF2 19 262 2.1E-135 T 23-04-2016 SD28_RS06955 56e7a32d9b9f6b96ac2774f6fcb26ffe 269 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 26 249 3.5E-103 T 23-04-2016 IPR022488 Polyphosphate kinase-2-related SD28_RS04190 1802827626e8a42c0ee1645f5be2e886 457 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 3 454 5.0E-202 T 23-04-2016 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 SD28_RS04190 1802827626e8a42c0ee1645f5be2e886 457 PANTHER PTHR30182 1 454 9.9E-197 T 23-04-2016 SD28_RS04190 1802827626e8a42c0ee1645f5be2e886 457 Gene3D G3DSA:3.30.1330.90 10 155 4.3E-50 T 23-04-2016 IPR029009 Allosteric substrate binding domain SD28_RS04190 1802827626e8a42c0ee1645f5be2e886 457 Pfam PF03313 Serine dehydratase alpha chain 185 451 9.1E-93 T 23-04-2016 IPR005130 Serine dehydratase-like, alpha subunit SD28_RS04190 1802827626e8a42c0ee1645f5be2e886 457 Pfam PF03315 Serine dehydratase beta chain 3 153 4.5E-53 T 23-04-2016 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 SD28_RS04190 1802827626e8a42c0ee1645f5be2e886 457 SUPERFAMILY SSF143548 16 154 1.02E-43 T 23-04-2016 IPR029009 Allosteric substrate binding domain SD28_RS04190 1802827626e8a42c0ee1645f5be2e886 457 PANTHER PTHR30182:SF1 1 454 9.9E-197 T 23-04-2016 SD28_RS01435 fc971ab4cfe987539d3b33c340a5f977 275 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 7 273 27.761 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS01435 fc971ab4cfe987539d3b33c340a5f977 275 SUPERFAMILY SSF54211 10 160 1.29E-39 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS01435 fc971ab4cfe987539d3b33c340a5f977 275 Gene3D G3DSA:3.30.230.10 10 161 2.3E-48 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SD28_RS01435 fc971ab4cfe987539d3b33c340a5f977 275 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 9 268 9.2E-59 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS01435 fc971ab4cfe987539d3b33c340a5f977 275 Pfam PF00288 GHMP kinases N terminal domain 90 147 2.5E-8 T 23-04-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 SD28_RS01435 fc971ab4cfe987539d3b33c340a5f977 275 PANTHER PTHR20861:SF2 11 272 2.2E-62 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS01435 fc971ab4cfe987539d3b33c340a5f977 275 SUPERFAMILY SSF55060 164 273 2.35E-16 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain SD28_RS01435 fc971ab4cfe987539d3b33c340a5f977 275 PANTHER PTHR20861 11 272 2.2E-62 T 23-04-2016 SD28_RS01435 fc971ab4cfe987539d3b33c340a5f977 275 Gene3D G3DSA:3.30.70.890 167 272 9.6E-16 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain SD28_RS01435 fc971ab4cfe987539d3b33c340a5f977 275 PIRSF PIRSF010376 5 274 4.5E-72 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS00805 ebea0c90659561445313bf61865d75c7 110 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 16 110 7.3E-34 T 23-04-2016 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 SD28_RS00805 ebea0c90659561445313bf61865d75c7 110 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 23 95 2.0E-15 T 23-04-2016 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 SD28_RS00805 ebea0c90659561445313bf61865d75c7 110 PANTHER PTHR36835 3 110 2.4E-28 T 23-04-2016 SD28_RS02260 6fd71fc57b025adf87f0d0c2c5b73c0f 249 SUPERFAMILY SSF53633 13 246 2.23E-57 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 SD28_RS02260 6fd71fc57b025adf87f0d0c2c5b73c0f 249 Hamap MF_01220_B Uridylate kinase [pyrH]. 13 247 35.552 T 23-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 SD28_RS02260 6fd71fc57b025adf87f0d0c2c5b73c0f 249 Pfam PF00696 Amino acid kinase family 16 226 3.2E-28 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 SD28_RS02260 6fd71fc57b025adf87f0d0c2c5b73c0f 249 PIRSF PIRSF005650 10 249 6.5E-73 T 23-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 SD28_RS02260 6fd71fc57b025adf87f0d0c2c5b73c0f 249 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 16 246 3.7E-79 T 23-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 SD28_RS02260 6fd71fc57b025adf87f0d0c2c5b73c0f 249 Gene3D G3DSA:3.40.1160.10 7 247 1.5E-65 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 SD28_RS02260 6fd71fc57b025adf87f0d0c2c5b73c0f 249 PANTHER PTHR21499 1 247 1.0E-81 T 23-04-2016 SD28_RS02260 6fd71fc57b025adf87f0d0c2c5b73c0f 249 PANTHER PTHR21499:SF23 1 247 1.0E-81 T 23-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 SD28_RS04080 7fc452aab97781c854dbe28ee7009305 489 SUPERFAMILY SSF103473 11 197 9.59E-24 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS04080 7fc452aab97781c854dbe28ee7009305 489 SUPERFAMILY SSF103473 250 467 9.59E-24 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS04080 7fc452aab97781c854dbe28ee7009305 489 Pfam PF00854 POT family 105 431 9.2E-48 T 23-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS04080 7fc452aab97781c854dbe28ee7009305 489 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 11 470 4.0E-89 T 23-04-2016 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 SD28_RS04080 7fc452aab97781c854dbe28ee7009305 489 PANTHER PTHR11654 12 210 2.5E-108 T 23-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS04080 7fc452aab97781c854dbe28ee7009305 489 PANTHER PTHR11654 244 489 2.5E-108 T 23-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS04080 7fc452aab97781c854dbe28ee7009305 489 PANTHER PTHR11654:SF99 12 210 2.5E-108 T 23-04-2016 SD28_RS04080 7fc452aab97781c854dbe28ee7009305 489 PANTHER PTHR11654:SF99 244 489 2.5E-108 T 23-04-2016 SD28_RS04080 7fc452aab97781c854dbe28ee7009305 489 Gene3D G3DSA:1.20.1250.20 12 192 1.3E-18 T 23-04-2016 SD28_RS04080 7fc452aab97781c854dbe28ee7009305 489 Gene3D G3DSA:1.20.1250.20 259 466 6.8E-6 T 23-04-2016 SD28_RS03950 e4f01fd3ea175b0c3f3ae245e06c5ae0 344 Pfam PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family 33 320 1.8E-43 T 23-04-2016 IPR029132 Choloylglycine hydrolase/NAAA C-terminal SD28_RS03950 e4f01fd3ea175b0c3f3ae245e06c5ae0 344 PANTHER PTHR35527:SF2 38 344 2.3E-64 T 23-04-2016 SD28_RS03950 e4f01fd3ea175b0c3f3ae245e06c5ae0 344 SUPERFAMILY SSF56235 32 326 2.08E-62 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal SD28_RS03950 e4f01fd3ea175b0c3f3ae245e06c5ae0 344 Gene3D G3DSA:3.60.60.10 31 342 3.9E-78 T 23-04-2016 IPR003199 Choloylglycine hydrolase/Peptidase C59 family GO:0016811 SD28_RS03950 e4f01fd3ea175b0c3f3ae245e06c5ae0 344 PANTHER PTHR35527 38 344 2.3E-64 T 23-04-2016 SD28_RS03985 d8f434760fd01175862cd14ae5dba189 137 SUPERFAMILY SSF101738 2 115 3.01E-35 T 23-04-2016 IPR007481 Stringent starvation protein B SD28_RS03985 d8f434760fd01175862cd14ae5dba189 137 PIRSF PIRSF005276 1 133 8.9E-41 T 23-04-2016 IPR007481 Stringent starvation protein B SD28_RS03985 d8f434760fd01175862cd14ae5dba189 137 Pfam PF04386 Stringent starvation protein B 4 98 2.4E-18 T 23-04-2016 IPR007481 Stringent starvation protein B SD28_RS03985 d8f434760fd01175862cd14ae5dba189 137 PANTHER PTHR37486 1 98 8.8E-23 T 23-04-2016 SD28_RS03985 d8f434760fd01175862cd14ae5dba189 137 Gene3D G3DSA:2.30.30.220 2 99 7.4E-34 T 23-04-2016 IPR007481 Stringent starvation protein B SD28_RS03985 d8f434760fd01175862cd14ae5dba189 137 PANTHER PTHR37486:SF1 1 98 8.8E-23 T 23-04-2016 SD28_RS06910 71acfd47eca5bac8c39cc6f04525c303 301 PANTHER PTHR13767 1 293 3.2E-110 T 23-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS06910 71acfd47eca5bac8c39cc6f04525c303 301 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 9 217 5.3E-78 T 23-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS06910 71acfd47eca5bac8c39cc6f04525c303 301 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 30 178 1.2E-61 T 23-04-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 SD28_RS06910 71acfd47eca5bac8c39cc6f04525c303 301 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 8 293 19.005 T 23-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS06910 71acfd47eca5bac8c39cc6f04525c303 301 SUPERFAMILY SSF55120 8 230 5.52E-81 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS06910 71acfd47eca5bac8c39cc6f04525c303 301 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 179 227 5.1E-10 T 23-04-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal SD28_RS06910 71acfd47eca5bac8c39cc6f04525c303 301 PANTHER PTHR13767:SF2 1 293 3.2E-110 T 23-04-2016 SD28_RS05445 0cfbafc4d21581b261e2200f86e490c7 283 PANTHER PTHR18895 42 258 2.2E-57 T 23-04-2016 SD28_RS05445 0cfbafc4d21581b261e2200f86e490c7 283 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 4 278 29.037 T 23-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 SD28_RS05445 0cfbafc4d21581b261e2200f86e490c7 283 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 43 271 2.8E-61 T 23-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 SD28_RS05445 0cfbafc4d21581b261e2200f86e490c7 283 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 38 276 7.5E-71 T 23-04-2016 SD28_RS05445 0cfbafc4d21581b261e2200f86e490c7 283 PANTHER PTHR18895:SF69 42 258 2.2E-57 T 23-04-2016 SD28_RS05445 0cfbafc4d21581b261e2200f86e490c7 283 SUPERFAMILY SSF53335 54 272 1.31E-36 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS05445 0cfbafc4d21581b261e2200f86e490c7 283 PIRSF PIRSF000401 12 280 1.1E-70 T 23-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 SD28_RS05445 0cfbafc4d21581b261e2200f86e490c7 283 Gene3D G3DSA:3.40.50.150 89 272 1.2E-36 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS03345 759587480e4049bc6510da5f6d019ce8 220 SUPERFAMILY SSF52141 2 218 6.54E-94 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like SD28_RS03345 759587480e4049bc6510da5f6d019ce8 220 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 9 217 37.695 T 23-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 SD28_RS03345 759587480e4049bc6510da5f6d019ce8 220 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 2 209 1.3E-88 T 23-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 SD28_RS03345 759587480e4049bc6510da5f6d019ce8 220 SMART SM00986 45 206 3.1E-33 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like SD28_RS03345 759587480e4049bc6510da5f6d019ce8 220 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 53 62 - T 23-04-2016 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 SD28_RS03345 759587480e4049bc6510da5f6d019ce8 220 Pfam PF03167 Uracil DNA glycosylase superfamily 49 205 4.6E-23 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like SD28_RS03345 759587480e4049bc6510da5f6d019ce8 220 SMART SM00987 45 206 3.1E-33 T 23-04-2016 SD28_RS03345 759587480e4049bc6510da5f6d019ce8 220 PANTHER PTHR11264 1 220 4.9E-133 T 23-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 SD28_RS03345 759587480e4049bc6510da5f6d019ce8 220 Gene3D G3DSA:3.40.470.10 2 218 2.7E-98 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 2 692 28.649 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 PANTHER PTHR11252 8 689 0.0 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 SMART SM00316 623 691 7.9E-9 T 23-04-2016 IPR022967 RNA-binding domain, S1 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 241 321 7.1E-20 T 23-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 Pfam PF03725 3' exoribonuclease family, domain 2 463 530 6.8E-7 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 Pfam PF03725 3' exoribonuclease family, domain 2 147 209 9.4E-13 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 Pfam PF01138 3' exoribonuclease family, domain 1 326 459 2.7E-18 T 23-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 Pfam PF01138 3' exoribonuclease family, domain 1 13 143 2.7E-22 T 23-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 Pfam PF00013 KH domain 561 616 3.4E-8 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 SUPERFAMILY SSF54211 300 495 8.1E-45 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 SUPERFAMILY SSF54211 3 143 3.24E-48 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 Gene3D G3DSA:3.30.1370.10 555 622 8.3E-21 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 Gene3D G3DSA:2.40.50.140 623 690 2.4E-10 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 SUPERFAMILY SSF54791 558 643 9.49E-20 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 Gene3D G3DSA:3.30.230.70 3 223 4.6E-77 T 23-04-2016 IPR027408 PNPase/RNase PH domain SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 Gene3D G3DSA:3.30.230.70 317 546 5.3E-83 T 23-04-2016 IPR027408 PNPase/RNase PH domain SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 SUPERFAMILY SSF50249 622 691 2.12E-8 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 691 2.1E-293 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 SMART SM00322 555 620 6.1E-8 T 23-04-2016 IPR004087 K Homology domain GO:0003676 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 SUPERFAMILY SSF55666 145 234 7.85E-26 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 Gene3D G3DSA:1.10.10.400 226 316 3.3E-23 T 23-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 PIRSF PIRSF005499 2 693 1.5E-277 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 PANTHER PTHR11252:SF0 8 689 0.0 T 23-04-2016 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 SUPERFAMILY SSF55666 453 551 4.19E-29 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 SUPERFAMILY SSF46915 238 321 4.18E-16 T 23-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 SD28_RS03460 7647929e7fe04f5bca517b6e7d102715 693 Pfam PF00575 S1 RNA binding domain 622 689 8.1E-5 T 23-04-2016 IPR003029 S1 domain GO:0003676 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 169 217 5.5E-15 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 PANTHER PTHR11451 1 633 0.0 T 23-04-2016 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 SUPERFAMILY SSF81271 3 61 3.6E-11 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 Gene3D G3DSA:3.10.20.30 1 64 3.0E-16 T 23-04-2016 IPR012675 Beta-grasp domain SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 PANTHER PTHR11451:SF31 1 633 0.0 T 23-04-2016 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 317 527 1.0E-41 T 23-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 SUPERFAMILY SSF55681 241 524 3.06E-94 T 23-04-2016 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 Gene3D G3DSA:3.30.930.10 240 528 1.3E-115 T 23-04-2016 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 Gene3D G3DSA:3.30.980.10 66 129 2.2E-41 T 23-04-2016 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 Gene3D G3DSA:3.30.980.10 186 222 2.2E-41 T 23-04-2016 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 629 4.1E-216 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 Pfam PF03129 Anticodon binding domain 539 628 7.0E-19 T 23-04-2016 IPR004154 Anticodon-binding SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 Gene3D G3DSA:3.30.54.20 132 185 5.3E-21 T 23-04-2016 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 632 33.39 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 Gene3D G3DSA:3.40.50.800 529 631 3.5E-30 T 23-04-2016 IPR004154 Anticodon-binding SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 462 490 2.1E-50 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 327 355 2.1E-50 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 360 383 2.1E-50 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 505 518 2.1E-50 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 532 544 2.1E-50 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 SUPERFAMILY SSF52954 527 630 5.74E-27 T 23-04-2016 IPR004154 Anticodon-binding SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 SUPERFAMILY SSF55186 63 239 4.58E-66 T 23-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 SD28_RS04225 1f4175df6656bd62410e66be699641fa 634 SMART SM00863 168 217 4.5E-24 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 SD28_RS07830 f41bf88f6e6e215528dfaa3fdc31fc62 126 PANTHER PTHR30298 8 126 9.5E-28 T 23-04-2016 SD28_RS07830 f41bf88f6e6e215528dfaa3fdc31fc62 126 Pfam PF01609 Transposase DDE domain 30 92 2.1E-7 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 SD28_RS00025 b25cd081fbf6e528f34ec576bf633acb 365 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 2 348 1.9E-102 T 23-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 SD28_RS00025 b25cd081fbf6e528f34ec576bf633acb 365 Pfam PF02222 ATP-grasp domain 106 275 1.8E-52 T 23-04-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 SD28_RS00025 b25cd081fbf6e528f34ec576bf633acb 365 SUPERFAMILY SSF56059 97 294 9.02E-56 T 23-04-2016 SD28_RS00025 b25cd081fbf6e528f34ec576bf633acb 365 Gene3D G3DSA:3.30.1490.20 112 177 2.3E-19 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 SD28_RS00025 b25cd081fbf6e528f34ec576bf633acb 365 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 2 346 36.1 T 23-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 SD28_RS00025 b25cd081fbf6e528f34ec576bf633acb 365 PANTHER PTHR11609:SF5 1 342 7.1E-106 T 23-04-2016 SD28_RS00025 b25cd081fbf6e528f34ec576bf633acb 365 SUPERFAMILY SSF52440 1 96 7.63E-16 T 23-04-2016 IPR016185 Pre-ATP-grasp domain SD28_RS00025 b25cd081fbf6e528f34ec576bf633acb 365 Gene3D G3DSA:3.30.470.20 178 345 8.8E-52 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS00025 b25cd081fbf6e528f34ec576bf633acb 365 PANTHER PTHR11609 1 342 7.1E-106 T 23-04-2016 SD28_RS00025 b25cd081fbf6e528f34ec576bf633acb 365 SUPERFAMILY SSF51246 299 358 6.2E-12 T 23-04-2016 IPR011054 Rudiment single hybrid motif SD28_RS00025 b25cd081fbf6e528f34ec576bf633acb 365 Gene3D G3DSA:3.40.50.20 2 105 2.4E-21 T 23-04-2016 IPR016185 Pre-ATP-grasp domain SD28_RS06760 1815834a30db6e03fde65d4623390f92 383 PANTHER PTHR30244:SF3 1 383 1.2E-122 T 23-04-2016 SD28_RS06760 1815834a30db6e03fde65d4623390f92 383 Gene3D G3DSA:3.90.1150.10 262 383 1.2E-33 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS06760 1815834a30db6e03fde65d4623390f92 383 Gene3D G3DSA:3.40.640.10 3 260 1.7E-77 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS06760 1815834a30db6e03fde65d4623390f92 383 SUPERFAMILY SSF53383 3 383 2.02E-108 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS06760 1815834a30db6e03fde65d4623390f92 383 PIRSF PIRSF000390 1 383 3.1E-104 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase SD28_RS06760 1815834a30db6e03fde65d4623390f92 383 TIGRFAM TIGR03588 PseC: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase 3 382 3.4E-160 T 23-04-2016 IPR020026 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase SD28_RS06760 1815834a30db6e03fde65d4623390f92 383 PANTHER PTHR30244 1 383 1.2E-122 T 23-04-2016 SD28_RS06760 1815834a30db6e03fde65d4623390f92 383 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 379 1.2E-105 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase SD28_RS01620 6a7ded7168028e24fd9bf442c099618e 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 39 1.0E-13 T 23-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS01620 6a7ded7168028e24fd9bf442c099618e 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.059 T 23-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS01620 6a7ded7168028e24fd9bf442c099618e 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 23-04-2016 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS01620 6a7ded7168028e24fd9bf442c099618e 44 PANTHER PTHR14503 1 44 1.9E-19 T 23-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS01620 6a7ded7168028e24fd9bf442c099618e 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 1.3E-24 T 23-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS01620 6a7ded7168028e24fd9bf442c099618e 44 Pfam PF00468 Ribosomal protein L34 1 44 6.7E-23 T 23-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS04205 b6667b39956d8db49596a4fa29d0e902 183 TIGRFAM TIGR03406 FeS_long_SufT: probable FeS assembly SUF system protein SufT 8 182 7.0E-78 T 23-04-2016 IPR017776 FeS assembly SUF system protein SufT, putative SD28_RS04205 b6667b39956d8db49596a4fa29d0e902 183 PANTHER PTHR13696 13 180 1.9E-33 T 23-04-2016 SD28_RS04205 b6667b39956d8db49596a4fa29d0e902 183 SUPERFAMILY SSF117916 81 181 2.62E-28 T 23-04-2016 SD28_RS04205 b6667b39956d8db49596a4fa29d0e902 183 PANTHER PTHR13696:SF62 13 180 1.9E-33 T 23-04-2016 SD28_RS04205 b6667b39956d8db49596a4fa29d0e902 183 Pfam PF01883 Domain of unknown function DUF59 84 159 1.3E-13 T 23-04-2016 IPR002744 Domain of unknown function DUF59 SD28_RS00460 68e319256dcccdf47c4de5e9dd475c90 422 Gene3D G3DSA:1.20.1250.20 223 419 6.9E-10 T 23-04-2016 SD28_RS00460 68e319256dcccdf47c4de5e9dd475c90 422 Gene3D G3DSA:1.20.1250.20 18 203 2.6E-24 T 23-04-2016 SD28_RS00460 68e319256dcccdf47c4de5e9dd475c90 422 PANTHER PTHR23512 1 404 5.3E-74 T 23-04-2016 SD28_RS00460 68e319256dcccdf47c4de5e9dd475c90 422 SUPERFAMILY SSF103473 9 421 1.44E-52 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS00460 68e319256dcccdf47c4de5e9dd475c90 422 Pfam PF07690 Major Facilitator Superfamily 33 368 3.4E-31 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS00460 68e319256dcccdf47c4de5e9dd475c90 422 PANTHER PTHR23512:SF1 1 404 5.3E-74 T 23-04-2016 SD28_RS04645 b83295957d4313ce9770c1b5d993a427 319 Gene3D G3DSA:1.10.10.10 1 61 4.6E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS04645 b83295957d4313ce9770c1b5d993a427 319 Gene3D G3DSA:3.30.930.10 73 263 9.6E-53 T 23-04-2016 SD28_RS04645 b83295957d4313ce9770c1b5d993a427 319 Pfam PF08279 HTH domain 5 57 2.7E-9 T 23-04-2016 IPR013196 Helix-turn-helix, type 11 SD28_RS04645 b83295957d4313ce9770c1b5d993a427 319 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 77 311 1.7E-47 T 23-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 SD28_RS04645 b83295957d4313ce9770c1b5d993a427 319 Pfam PF03099 Biotin/lipoate A/B protein ligase family 80 204 1.3E-9 T 23-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 SD28_RS04645 b83295957d4313ce9770c1b5d993a427 319 SUPERFAMILY SSF46785 1 47 1.09E-7 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS04645 b83295957d4313ce9770c1b5d993a427 319 SUPERFAMILY SSF55681 77 263 3.69E-50 T 23-04-2016 SD28_RS04645 b83295957d4313ce9770c1b5d993a427 319 PANTHER PTHR12835 5 314 5.6E-58 T 23-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 SD28_RS01560 17329463cf5258583b553a084304e983 588 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 585 7.5E-247 T 23-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 SD28_RS01560 17329463cf5258583b553a084304e983 588 SUPERFAMILY SSF55261 291 422 8.28E-39 T 23-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 SD28_RS01560 17329463cf5258583b553a084304e983 588 SUPERFAMILY SSF55681 114 293 6.13E-105 T 23-04-2016 SD28_RS01560 17329463cf5258583b553a084304e983 588 SUPERFAMILY SSF55681 427 585 6.13E-105 T 23-04-2016 SD28_RS01560 17329463cf5258583b553a084304e983 588 Pfam PF02938 GAD domain 309 409 6.2E-25 T 23-04-2016 IPR029351 GAD domain SD28_RS01560 17329463cf5258583b553a084304e983 588 SUPERFAMILY SSF50249 1 104 8.0E-32 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01560 17329463cf5258583b553a084304e983 588 Gene3D G3DSA:3.30.930.10 417 586 2.7E-113 T 23-04-2016 SD28_RS01560 17329463cf5258583b553a084304e983 588 Gene3D G3DSA:3.30.930.10 132 277 2.7E-113 T 23-04-2016 SD28_RS01560 17329463cf5258583b553a084304e983 588 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 1 564 35.964 T 23-04-2016 SD28_RS01560 17329463cf5258583b553a084304e983 588 Pfam PF01336 OB-fold nucleic acid binding domain 18 101 4.3E-19 T 23-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 SD28_RS01560 17329463cf5258583b553a084304e983 588 PANTHER PTHR22594 373 572 1.9E-245 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS01560 17329463cf5258583b553a084304e983 588 PANTHER PTHR22594 1 298 1.9E-245 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS01560 17329463cf5258583b553a084304e983 588 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 559 4.3E-106 T 23-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS01560 17329463cf5258583b553a084304e983 588 Gene3D G3DSA:3.30.1360.30 278 416 2.9E-43 T 23-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 SD28_RS01560 17329463cf5258583b553a084304e983 588 PANTHER PTHR22594:SF5 373 572 1.9E-245 T 23-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 SD28_RS01560 17329463cf5258583b553a084304e983 588 PANTHER PTHR22594:SF5 1 298 1.9E-245 T 23-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 SD28_RS01560 17329463cf5258583b553a084304e983 588 Gene3D G3DSA:2.40.50.140 1 106 1.2E-37 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01560 17329463cf5258583b553a084304e983 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 191 203 1.7E-24 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS01560 17329463cf5258583b553a084304e983 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 519 533 1.7E-24 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS01560 17329463cf5258583b553a084304e983 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 221 1.7E-24 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS01560 17329463cf5258583b553a084304e983 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 475 491 1.7E-24 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS03835 bddc4e70aaf4a6a22462fa828c56371c 197 PANTHER PTHR11649 8 196 5.1E-44 T 23-04-2016 SD28_RS03835 bddc4e70aaf4a6a22462fa828c56371c 197 SUPERFAMILY SSF52540 1 195 1.46E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03835 bddc4e70aaf4a6a22462fa828c56371c 197 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 6 192 2.4E-71 T 23-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 SD28_RS03835 bddc4e70aaf4a6a22462fa828c56371c 197 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 11 196 27.404 T 23-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 SD28_RS03835 bddc4e70aaf4a6a22462fa828c56371c 197 Pfam PF01926 50S ribosome-binding GTPase 25 130 4.6E-18 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS03835 bddc4e70aaf4a6a22462fa828c56371c 197 Gene3D G3DSA:3.40.50.300 5 194 4.1E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04875 f40eead0feffb1cf90c140b96af8a5e9 249 SUPERFAMILY SSF52402 5 221 1.37E-44 T 23-04-2016 SD28_RS04875 f40eead0feffb1cf90c140b96af8a5e9 249 PANTHER PTHR11807 3 248 9.9E-86 T 23-04-2016 SD28_RS04875 f40eead0feffb1cf90c140b96af8a5e9 249 PIRSF PIRSF004976 1 249 5.0E-63 T 23-04-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 SD28_RS04875 f40eead0feffb1cf90c140b96af8a5e9 249 Gene3D G3DSA:3.40.50.620 8 193 1.1E-20 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS04875 f40eead0feffb1cf90c140b96af8a5e9 249 Pfam PF01171 PP-loop family 28 192 2.1E-13 T 23-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal SD28_RS04875 f40eead0feffb1cf90c140b96af8a5e9 249 Hamap MF_01850 tRNA 2-thiocytidine biosynthesis protein TtcA [ttcA]. 1 249 47.521 T 23-04-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 SD28_RS04875 f40eead0feffb1cf90c140b96af8a5e9 249 PANTHER PTHR11807:SF16 3 248 9.9E-86 T 23-04-2016 SD28_RS07165 cbf37a241da6a584530bedb2e8fc85b0 303 SUPERFAMILY SSF52540 54 182 2.86E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07165 cbf37a241da6a584530bedb2e8fc85b0 303 SUPERFAMILY SSF48019 193 301 2.04E-8 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 SD28_RS07165 cbf37a241da6a584530bedb2e8fc85b0 303 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 192 301 7.5E-17 T 23-04-2016 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS07165 cbf37a241da6a584530bedb2e8fc85b0 303 PANTHER PTHR11669:SF8 7 260 3.2E-21 T 23-04-2016 SD28_RS07165 cbf37a241da6a584530bedb2e8fc85b0 303 Gene3D G3DSA:1.20.272.10 194 301 2.3E-11 T 23-04-2016 SD28_RS07165 cbf37a241da6a584530bedb2e8fc85b0 303 PANTHER PTHR11669 7 260 3.2E-21 T 23-04-2016 SD28_RS07165 cbf37a241da6a584530bedb2e8fc85b0 303 Gene3D G3DSA:3.40.50.300 17 148 1.9E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07165 cbf37a241da6a584530bedb2e8fc85b0 303 Pfam PF13177 DNA polymerase III, delta subunit 8 149 1.1E-22 T 23-04-2016 SD28_RS05840 2c9a8449f3b357828c50e31f7751ab37 139 Pfam PF13279 Thioesterase-like superfamily 13 133 4.2E-16 T 23-04-2016 SD28_RS05840 2c9a8449f3b357828c50e31f7751ab37 139 PIRSF PIRSF003230 1 139 1.1E-23 T 23-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 SD28_RS05840 2c9a8449f3b357828c50e31f7751ab37 139 PANTHER PTHR31793 12 135 3.4E-26 T 23-04-2016 SD28_RS05840 2c9a8449f3b357828c50e31f7751ab37 139 Gene3D G3DSA:3.10.129.10 5 133 2.4E-34 T 23-04-2016 IPR029069 HotDog domain SD28_RS05840 2c9a8449f3b357828c50e31f7751ab37 139 SUPERFAMILY SSF54637 6 133 6.95E-31 T 23-04-2016 IPR029069 HotDog domain SD28_RS02055 d6dda86cc8227cbcf65466f7c33d65c2 284 PANTHER PTHR10534 1 284 9.7E-79 T 23-04-2016 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 SD28_RS02055 d6dda86cc8227cbcf65466f7c33d65c2 284 Pfam PF08543 Phosphomethylpyrimidine kinase 80 270 1.8E-17 T 23-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 SD28_RS02055 d6dda86cc8227cbcf65466f7c33d65c2 284 SUPERFAMILY SSF53613 6 280 4.52E-59 T 23-04-2016 IPR029056 Ribokinase-like SD28_RS02055 d6dda86cc8227cbcf65466f7c33d65c2 284 Gene3D G3DSA:3.40.1190.20 4 283 9.2E-78 T 23-04-2016 IPR029056 Ribokinase-like SD28_RS02055 d6dda86cc8227cbcf65466f7c33d65c2 284 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 7 283 1.9E-76 T 23-04-2016 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 SD28_RS05975 512f4ab6fffc9f033cfe50104ec20db3 348 PANTHER PTHR30509 292 322 2.5E-27 T 23-04-2016 SD28_RS05975 512f4ab6fffc9f033cfe50104ec20db3 348 PANTHER PTHR30509 1 253 2.5E-27 T 23-04-2016 SD28_RS05975 512f4ab6fffc9f033cfe50104ec20db3 348 Pfam PF04632 Fusaric acid resistance protein family 16 222 1.0E-23 T 23-04-2016 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 SD28_RS04695 af2fbfe8b4a7685166b0b712286353c4 869 Gene3D G3DSA:2.40.50.140 31 121 1.1E-27 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS04695 af2fbfe8b4a7685166b0b712286353c4 869 PANTHER PTHR30001 1 677 3.1E-231 T 23-04-2016 SD28_RS04695 af2fbfe8b4a7685166b0b712286353c4 869 PANTHER PTHR30001:SF1 1 677 3.1E-231 T 23-04-2016 SD28_RS04695 af2fbfe8b4a7685166b0b712286353c4 869 Pfam PF00575 S1 RNA binding domain 36 115 3.3E-8 T 23-04-2016 IPR003029 S1 domain GO:0003676 SD28_RS04695 af2fbfe8b4a7685166b0b712286353c4 869 Pfam PF10150 Ribonuclease E/G family 118 388 3.9E-89 T 23-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 SD28_RS04695 af2fbfe8b4a7685166b0b712286353c4 869 SUPERFAMILY SSF50249 40 121 1.21E-15 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS04695 af2fbfe8b4a7685166b0b712286353c4 869 Hamap MF_00970 Ribonuclease E [rne]. 1 833 28.953 T 23-04-2016 IPR028878 Ribonuclease E GO:0006396|GO:0008995 SD28_RS04695 af2fbfe8b4a7685166b0b712286353c4 869 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 422 1.2E-149 T 23-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 SD28_RS04695 af2fbfe8b4a7685166b0b712286353c4 869 SMART SM00316 37 116 2.6E-9 T 23-04-2016 IPR022967 RNA-binding domain, S1 SD28_RS05165 1f295f6a5f9b3ec22a14858907b2aa0c 514 PANTHER PTHR11785 2 409 1.1E-64 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS05165 1f295f6a5f9b3ec22a14858907b2aa0c 514 PANTHER PTHR11785 495 513 1.1E-64 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS05165 1f295f6a5f9b3ec22a14858907b2aa0c 514 PANTHER PTHR11785 433 473 1.1E-64 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS05165 1f295f6a5f9b3ec22a14858907b2aa0c 514 PANTHER PTHR11785:SF322 2 409 1.1E-64 T 23-04-2016 SD28_RS05165 1f295f6a5f9b3ec22a14858907b2aa0c 514 PANTHER PTHR11785:SF322 495 513 1.1E-64 T 23-04-2016 SD28_RS05165 1f295f6a5f9b3ec22a14858907b2aa0c 514 PANTHER PTHR11785:SF322 433 473 1.1E-64 T 23-04-2016 SD28_RS05165 1f295f6a5f9b3ec22a14858907b2aa0c 514 PIRSF PIRSF006060 1 445 4.3E-60 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS05165 1f295f6a5f9b3ec22a14858907b2aa0c 514 Pfam PF13520 Amino acid permease 4 419 1.0E-26 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS05370 6d9488df499d02e9dde65a71c02e3716 135 PANTHER PTHR33221 3 135 1.5E-32 T 23-04-2016 SD28_RS05370 6d9488df499d02e9dde65a71c02e3716 135 Pfam PF02082 Transcriptional regulator 3 83 6.5E-18 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type SD28_RS05370 6d9488df499d02e9dde65a71c02e3716 135 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 3 132 3.0E-28 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type SD28_RS05370 6d9488df499d02e9dde65a71c02e3716 135 TIGRFAM TIGR02944 suf_reg_Xantho: FeS assembly SUF system regulator 1 130 4.6E-54 T 23-04-2016 IPR014290 SUF system FeS cluster assembly regulator SD28_RS05370 6d9488df499d02e9dde65a71c02e3716 135 Gene3D G3DSA:1.10.10.10 2 134 3.3E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS05370 6d9488df499d02e9dde65a71c02e3716 135 SUPERFAMILY SSF46785 3 134 4.21E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS05455 6b4e62dd2e25c10ae26cf3f55ecfed0a 329 TIGRFAM TIGR00109 hemH: ferrochelatase 7 327 2.1E-87 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 SD28_RS05455 6b4e62dd2e25c10ae26cf3f55ecfed0a 329 Hamap MF_00323 Ferrochelatase [hemH]. 9 329 35.36 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 SD28_RS05455 6b4e62dd2e25c10ae26cf3f55ecfed0a 329 PANTHER PTHR11108 10 329 4.7E-94 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 SD28_RS05455 6b4e62dd2e25c10ae26cf3f55ecfed0a 329 ProSitePatterns PS00534 Ferrochelatase signature. 197 216 - T 23-04-2016 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 SD28_RS05455 6b4e62dd2e25c10ae26cf3f55ecfed0a 329 Gene3D G3DSA:3.40.50.1400 9 209 2.3E-61 T 23-04-2016 SD28_RS05455 6b4e62dd2e25c10ae26cf3f55ecfed0a 329 Gene3D G3DSA:3.40.50.1400 210 328 1.1E-29 T 23-04-2016 SD28_RS05455 6b4e62dd2e25c10ae26cf3f55ecfed0a 329 Pfam PF00762 Ferrochelatase 10 328 9.3E-101 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 SD28_RS05455 6b4e62dd2e25c10ae26cf3f55ecfed0a 329 SUPERFAMILY SSF53800 9 328 5.72E-92 T 23-04-2016 SD28_RS01645 bf61257d66d6a9ae88e2351e168f6159 198 PANTHER PTHR30390:SF5 4 198 3.9E-86 T 23-04-2016 SD28_RS01645 bf61257d66d6a9ae88e2351e168f6159 198 PANTHER PTHR30390 4 198 3.9E-86 T 23-04-2016 SD28_RS01645 bf61257d66d6a9ae88e2351e168f6159 198 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 2 192 33.024 T 23-04-2016 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478|UniPathway: UPA00041 SD28_RS01645 bf61257d66d6a9ae88e2351e168f6159 198 Gene3D G3DSA:3.40.50.10490 4 193 9.8E-57 T 23-04-2016 SD28_RS01645 bf61257d66d6a9ae88e2351e168f6159 198 SUPERFAMILY SSF53697 4 193 8.74E-55 T 23-04-2016 SD28_RS01645 bf61257d66d6a9ae88e2351e168f6159 198 Pfam PF13580 SIS domain 11 146 2.6E-32 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 SD28_RS03745 7db4c1ede73f9efc403f08e85e8055f4 344 PRINTS PR00139 Asparaginase/glutaminase family signature 86 104 4.0E-17 T 23-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 SD28_RS03745 7db4c1ede73f9efc403f08e85e8055f4 344 PRINTS PR00139 Asparaginase/glutaminase family signature 9 20 4.0E-17 T 23-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 SD28_RS03745 7db4c1ede73f9efc403f08e85e8055f4 344 PRINTS PR00139 Asparaginase/glutaminase family signature 265 283 4.0E-17 T 23-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 SD28_RS03745 7db4c1ede73f9efc403f08e85e8055f4 344 PIRSF PIRSF001220 3 340 1.4E-84 T 23-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 SD28_RS03745 7db4c1ede73f9efc403f08e85e8055f4 344 Pfam PF00710 Asparaginase, N-terminal 8 195 4.0E-63 T 23-04-2016 IPR027474 L-asparaginase, N-terminal SD28_RS03745 7db4c1ede73f9efc403f08e85e8055f4 344 PANTHER PTHR11707:SF28 1 343 1.1E-134 T 23-04-2016 SD28_RS03745 7db4c1ede73f9efc403f08e85e8055f4 344 SMART SM00870 8 328 8.3E-108 T 23-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 SD28_RS03745 7db4c1ede73f9efc403f08e85e8055f4 344 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 87 97 - T 23-04-2016 IPR027475 Asparaginase/glutaminase, active site 2 SD28_RS03745 7db4c1ede73f9efc403f08e85e8055f4 344 Gene3D G3DSA:3.40.50.1170 6 201 2.0E-71 T 23-04-2016 IPR027474 L-asparaginase, N-terminal SD28_RS03745 7db4c1ede73f9efc403f08e85e8055f4 344 PIRSF PIRSF500176 5 338 1.3E-99 T 23-04-2016 SD28_RS03745 7db4c1ede73f9efc403f08e85e8055f4 344 SUPERFAMILY SSF53774 6 341 9.42E-102 T 23-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 SD28_RS03745 7db4c1ede73f9efc403f08e85e8055f4 344 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 7 341 8.2E-86 T 23-04-2016 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 SD28_RS03745 7db4c1ede73f9efc403f08e85e8055f4 344 PANTHER PTHR11707 1 343 1.1E-134 T 23-04-2016 SD28_RS03745 7db4c1ede73f9efc403f08e85e8055f4 344 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 11 19 - T 23-04-2016 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 SD28_RS03745 7db4c1ede73f9efc403f08e85e8055f4 344 Gene3D G3DSA:3.40.50.40 215 342 2.9E-44 T 23-04-2016 IPR027473 L-asparaginase, C-terminal domain SD28_RS05100 e297d6bfbfaa65a3d267d991a676d7c3 199 PANTHER PTHR10681 1 196 6.1E-82 T 23-04-2016 SD28_RS05100 e297d6bfbfaa65a3d267d991a676d7c3 199 Gene3D G3DSA:3.30.1020.10 161 194 2.3E-14 T 23-04-2016 SD28_RS05100 e297d6bfbfaa65a3d267d991a676d7c3 199 Gene3D G3DSA:3.40.30.10 4 160 7.6E-57 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS05100 e297d6bfbfaa65a3d267d991a676d7c3 199 PIRSF PIRSF000239 1 198 3.9E-55 T 23-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 SD28_RS05100 e297d6bfbfaa65a3d267d991a676d7c3 199 Pfam PF00578 AhpC/TSA family 4 138 6.6E-29 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 SD28_RS05100 e297d6bfbfaa65a3d267d991a676d7c3 199 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 159 192 1.2E-12 T 23-04-2016 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 SD28_RS05100 e297d6bfbfaa65a3d267d991a676d7c3 199 SUPERFAMILY SSF52833 1 193 1.52E-62 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS04350 410ee15178eaac8e970d8f7e46b94743 259 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 244 33.305 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS04350 410ee15178eaac8e970d8f7e46b94743 259 PANTHER PTHR11142 1 249 1.4E-88 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS04350 410ee15178eaac8e970d8f7e46b94743 259 Gene3D G3DSA:3.30.70.660 107 243 2.3E-44 T 23-04-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS04350 410ee15178eaac8e970d8f7e46b94743 259 Pfam PF01416 tRNA pseudouridine synthase 9 104 9.9E-10 T 23-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS04350 410ee15178eaac8e970d8f7e46b94743 259 Pfam PF01416 tRNA pseudouridine synthase 143 245 1.5E-29 T 23-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS04350 410ee15178eaac8e970d8f7e46b94743 259 SUPERFAMILY SSF55120 1 252 4.6E-87 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS04350 410ee15178eaac8e970d8f7e46b94743 259 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 5 238 1.3E-67 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS04350 410ee15178eaac8e970d8f7e46b94743 259 Gene3D G3DSA:3.30.70.580 1 105 5.9E-37 T 23-04-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS04350 410ee15178eaac8e970d8f7e46b94743 259 PIRSF PIRSF001430 1 256 2.3E-79 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS07605 c5b32dc6abf7c83a49b7679b389b59a0 284 Gene3D G3DSA:3.30.465.10 77 209 5.1E-37 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 SD28_RS07605 c5b32dc6abf7c83a49b7679b389b59a0 284 SUPERFAMILY SSF56176 8 193 1.12E-33 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 SD28_RS07605 c5b32dc6abf7c83a49b7679b389b59a0 284 SUPERFAMILY SSF56194 185 284 3.79E-26 T 23-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS07605 c5b32dc6abf7c83a49b7679b389b59a0 284 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 186 283 1.6E-23 T 23-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS07605 c5b32dc6abf7c83a49b7679b389b59a0 284 PANTHER PTHR21071 6 284 2.8E-65 T 23-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS07605 c5b32dc6abf7c83a49b7679b389b59a0 284 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 284 61.684 T 23-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS07605 c5b32dc6abf7c83a49b7679b389b59a0 284 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 8 280 5.4E-51 T 23-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS07605 c5b32dc6abf7c83a49b7679b389b59a0 284 Pfam PF01565 FAD binding domain 31 143 6.6E-14 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 SD28_RS07605 c5b32dc6abf7c83a49b7679b389b59a0 284 Gene3D G3DSA:3.90.78.10 210 284 5.2E-24 T 23-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 SD28_RS07605 c5b32dc6abf7c83a49b7679b389b59a0 284 Gene3D G3DSA:3.30.43.10 6 59 1.1E-8 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 Gene3D G3DSA:3.30.1490.20 3 110 1.8E-59 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 Gene3D G3DSA:3.30.1490.20 199 242 1.8E-59 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 Gene3D G3DSA:3.30.470.20 244 340 5.9E-39 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 Gene3D G3DSA:3.50.30.10 400 507 9.7E-36 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 3 872 0.0 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 Gene3D G3DSA:3.20.20.60 533 872 5.8E-128 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 762 780 - T 23-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 SUPERFAMILY SSF52009 388 513 3.01E-31 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 Pfam PF00391 PEP-utilising enzyme, mobile domain 420 504 9.3E-26 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 PANTHER PTHR22931:SF9 1 880 0.0 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 SUPERFAMILY SSF51621 512 871 5.96E-116 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 Gene3D G3DSA:1.20.80.30 111 196 3.1E-32 T 23-04-2016 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 Gene3D G3DSA:1.10.189.10 341 399 3.9E-27 T 23-04-2016 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 521 871 4.2E-83 T 23-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 PIRSF PIRSF000853 1 879 0.0 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 PANTHER PTHR22931 1 880 0.0 T 23-04-2016 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 SUPERFAMILY SSF56059 1 378 2.0E-141 T 23-04-2016 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 304 356 1.6E-10 T 23-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 296 6.7E-46 T 23-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 SD28_RS01575 563ce001ad62a8cc8cd06e5199df15b1 880 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 450 461 - T 23-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 SD28_RS04175 fb46476e81e46d0893e78cf3e0d97c75 539 PANTHER PTHR11785 5 471 2.6E-96 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS04175 fb46476e81e46d0893e78cf3e0d97c75 539 PANTHER PTHR11785 514 529 2.6E-96 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS04175 fb46476e81e46d0893e78cf3e0d97c75 539 Pfam PF13520 Amino acid permease 10 424 2.3E-40 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS04175 fb46476e81e46d0893e78cf3e0d97c75 539 PANTHER PTHR11785:SF322 5 471 2.6E-96 T 23-04-2016 SD28_RS04175 fb46476e81e46d0893e78cf3e0d97c75 539 PANTHER PTHR11785:SF322 514 529 2.6E-96 T 23-04-2016 SD28_RS04175 fb46476e81e46d0893e78cf3e0d97c75 539 PIRSF PIRSF006060 1 460 6.6E-58 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS05550 5cfad658bf694b39b45d6c512cdd70f8 297 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 75 93 8.4E-6 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS05550 5cfad658bf694b39b45d6c512cdd70f8 297 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 7 27 8.4E-6 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS05550 5cfad658bf694b39b45d6c512cdd70f8 297 PANTHER PTHR11649 3 295 1.6E-100 T 23-04-2016 SD28_RS05550 5cfad658bf694b39b45d6c512cdd70f8 297 Hamap MF_00367 GTPase Era [era]. 2 294 33.97 T 23-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 SD28_RS05550 5cfad658bf694b39b45d6c512cdd70f8 297 TIGRFAM TIGR00436 era: GTP-binding protein Era 5 277 1.4E-88 T 23-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 SD28_RS05550 5cfad658bf694b39b45d6c512cdd70f8 297 Pfam PF07650 KH domain 205 282 8.5E-17 T 23-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 SD28_RS05550 5cfad658bf694b39b45d6c512cdd70f8 297 SUPERFAMILY SSF52540 7 201 4.76E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05550 5cfad658bf694b39b45d6c512cdd70f8 297 Gene3D G3DSA:3.30.300.20 187 291 7.9E-39 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta SD28_RS05550 5cfad658bf694b39b45d6c512cdd70f8 297 Gene3D G3DSA:3.40.50.300 4 182 2.1E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05550 5cfad658bf694b39b45d6c512cdd70f8 297 Pfam PF01926 50S ribosome-binding GTPase 7 121 2.8E-23 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS05550 5cfad658bf694b39b45d6c512cdd70f8 297 PANTHER PTHR11649:SF3 3 295 1.6E-100 T 23-04-2016 SD28_RS05550 5cfad658bf694b39b45d6c512cdd70f8 297 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 161 1.8E-31 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 SD28_RS05550 5cfad658bf694b39b45d6c512cdd70f8 297 SUPERFAMILY SSF54814 178 295 2.75E-39 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 Gene3D G3DSA:3.40.50.300 560 790 9.0E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03150 91518b10974f46e86e826eed8a339800 843 Pfam PF05190 MutS family domain IV 420 510 3.9E-26 T 23-04-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 Gene3D G3DSA:3.30.420.110 123 252 1.4E-15 T 23-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 SUPERFAMILY SSF52540 560 790 3.31E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03150 91518b10974f46e86e826eed8a339800 843 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 681 697 - T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 SMART SM00534 600 786 2.3E-103 T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 Pfam PF05192 MutS domain III 266 551 1.7E-34 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 PIRSF PIRSF037677 1 821 8.8E-142 T 23-04-2016 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 PANTHER PTHR11361:SF86 1 813 2.4E-300 T 23-04-2016 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 Pfam PF05188 MutS domain II 125 249 5.5E-8 T 23-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 4 835 22.886 T 23-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 SMART SM00533 276 583 1.2E-82 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 Gene3D G3DSA:1.10.1420.10 309 469 3.0E-51 T 23-04-2016 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 SUPERFAMILY SSF55271 2 110 6.02E-42 T 23-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 SUPERFAMILY SSF48334 264 557 4.84E-76 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 PANTHER PTHR11361 1 813 2.4E-300 T 23-04-2016 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 Pfam PF00488 MutS domain V 604 789 1.3E-79 T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 SUPERFAMILY SSF53150 115 276 3.4E-20 T 23-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 Pfam PF01624 MutS domain I 5 116 3.2E-41 T 23-04-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 Gene3D G3DSA:3.40.1170.10 1 117 2.8E-49 T 23-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 SD28_RS03150 91518b10974f46e86e826eed8a339800 843 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 4 840 1.7E-296 T 23-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 SUPERFAMILY SSF52374 1 191 7.27E-133 T 23-04-2016 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 SUPERFAMILY SSF52374 340 541 7.27E-133 T 23-04-2016 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 SUPERFAMILY SSF52374 579 611 7.27E-133 T 23-04-2016 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 Gene3D G3DSA:1.10.287.380 843 902 6.8E-10 T 23-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 PANTHER PTHR11946 578 829 0.0 T 23-04-2016 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 PANTHER PTHR11946 846 908 0.0 T 23-04-2016 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 PANTHER PTHR11946 1 540 0.0 T 23-04-2016 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 Pfam PF08264 Anticodon-binding domain of tRNA 641 793 2.4E-37 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 Gene3D G3DSA:3.90.740.10 193 336 3.6E-50 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 SUPERFAMILY SSF50677 190 341 3.79E-63 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 SUPERFAMILY SSF47323 612 865 8.78E-62 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 Gene3D G3DSA:1.10.730.10 601 783 7.9E-56 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 SUPERFAMILY SSF46589 850 912 1.2E-16 T 23-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 PRINTS PR00986 Valyl-tRNA synthetase signature 445 466 9.7E-38 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 PRINTS PR00986 Valyl-tRNA synthetase signature 229 246 9.7E-38 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 PRINTS PR00986 Valyl-tRNA synthetase signature 476 494 9.7E-38 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 PRINTS PR00986 Valyl-tRNA synthetase signature 35 46 9.7E-38 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 PRINTS PR00986 Valyl-tRNA synthetase signature 345 358 9.7E-38 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 TIGRFAM TIGR00422 valS: valine--tRNA ligase 1 897 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 850 910 3.2E-19 T 23-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 Gene3D G3DSA:3.40.50.620 340 541 4.4E-138 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 Gene3D G3DSA:3.40.50.620 3 192 4.4E-138 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 Gene3D G3DSA:3.40.50.620 579 600 4.4E-138 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 15 601 2.6E-209 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 Hamap MF_02004 Valine--tRNA ligase [valS]. 1 915 15.977 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 PANTHER PTHR11946:SF5 578 829 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 PANTHER PTHR11946:SF5 846 908 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 SD28_RS02115 59d086b7b329ce6a8a249e0941223872 915 PANTHER PTHR11946:SF5 1 540 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 SD28_RS04110 aa3448eef3e98d30506d2885469050f7 366 PANTHER PTHR30188:SF3 26 360 4.3E-103 T 23-04-2016 SD28_RS04110 aa3448eef3e98d30506d2885469050f7 366 PANTHER PTHR30188 26 360 4.3E-103 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 SD28_RS04110 aa3448eef3e98d30506d2885469050f7 366 Pfam PF02405 Permease MlaE 154 360 1.3E-65 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 SD28_RS04110 aa3448eef3e98d30506d2885469050f7 366 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 117 360 1.5E-65 T 23-04-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria SD28_RS06970 961c95e5489bb3493deec0d8ba0cac96 92 Pfam PF13358 DDE superfamily endonuclease 2 59 8.5E-13 T 23-04-2016 SD28_RS06300 616552c003a8de9066b693b3b55afd05 211 SUPERFAMILY SSF50486 2 196 2.98E-47 T 23-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 SD28_RS06300 616552c003a8de9066b693b3b55afd05 211 PANTHER PTHR10429:SF0 1 189 1.7E-45 T 23-04-2016 SD28_RS06300 616552c003a8de9066b693b3b55afd05 211 Gene3D G3DSA:3.10.300.10 2 193 2.0E-41 T 23-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 SD28_RS06300 616552c003a8de9066b693b3b55afd05 211 PANTHER PTHR10429 1 189 1.7E-45 T 23-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 SD28_RS06300 616552c003a8de9066b693b3b55afd05 211 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 6 198 21.175 T 23-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 SD28_RS06300 616552c003a8de9066b693b3b55afd05 211 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 7 190 2.7E-35 T 23-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 SD28_RS02810 ef3637cf5d9cd94b29831383b68d9f91 461 Gene3D G3DSA:3.40.50.620 19 304 8.9E-112 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS02810 ef3637cf5d9cd94b29831383b68d9f91 461 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 1 461 37.898 T 23-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 SD28_RS02810 ef3637cf5d9cd94b29831383b68d9f91 461 SMART SM00840 342 403 3.0E-23 T 23-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 SD28_RS02810 ef3637cf5d9cd94b29831383b68d9f91 461 Gene3D G3DSA:1.20.120.640 306 393 7.2E-23 T 23-04-2016 SD28_RS02810 ef3637cf5d9cd94b29831383b68d9f91 461 Pfam PF09190 DALR domain 342 402 3.3E-20 T 23-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 SD28_RS02810 ef3637cf5d9cd94b29831383b68d9f91 461 SUPERFAMILY SSF52374 3 311 1.13E-98 T 23-04-2016 SD28_RS02810 ef3637cf5d9cd94b29831383b68d9f91 461 PANTHER PTHR10890 4 459 1.5E-229 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 SD28_RS02810 ef3637cf5d9cd94b29831383b68d9f91 461 SUPERFAMILY SSF47323 316 460 6.8E-37 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS02810 ef3637cf5d9cd94b29831383b68d9f91 461 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 312 2.3E-133 T 23-04-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 SD28_RS02810 ef3637cf5d9cd94b29831383b68d9f91 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 60 69 1.8E-29 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 SD28_RS02810 ef3637cf5d9cd94b29831383b68d9f91 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 24 35 1.8E-29 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 SD28_RS02810 ef3637cf5d9cd94b29831383b68d9f91 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 190 208 1.8E-29 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 SD28_RS02810 ef3637cf5d9cd94b29831383b68d9f91 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 221 242 1.8E-29 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 SD28_RS02810 ef3637cf5d9cd94b29831383b68d9f91 461 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 460 2.9E-177 T 23-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 Gene3D G3DSA:3.30.70.370 782 892 1.3E-68 T 23-04-2016 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 Gene3D G3DSA:3.30.70.370 627 674 1.3E-68 T 23-04-2016 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 SMART SM00279 168 203 3.3E-16 T 23-04-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 SMART SM00474 295 481 3.9E-36 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 Gene3D G3DSA:3.30.420.10 294 506 6.1E-76 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 TIGRFAM TIGR00593 pola: DNA polymerase I 4 892 3.1E-294 T 23-04-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 Gene3D G3DSA:3.40.50.1010 2 180 8.6E-70 T 23-04-2016 IPR029060 PIN domain-like SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 PANTHER PTHR10133:SF27 2 891 0.0 T 23-04-2016 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 SUPERFAMILY SSF47807 166 280 1.64E-36 T 23-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 SMART SM00475 2 256 6.2E-126 T 23-04-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 Pfam PF00476 DNA polymerase family A 515 889 5.4E-153 T 23-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 SUPERFAMILY SSF53098 294 480 5.7E-50 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 ProSitePatterns PS00447 DNA polymerase family A signature. 717 736 - T 23-04-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 SUPERFAMILY SSF56672 488 892 9.56E-156 T 23-04-2016 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 PANTHER PTHR10133 2 891 0.0 T 23-04-2016 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 Pfam PF01612 3'-5' exonuclease 295 479 7.1E-34 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 PRINTS PR00868 DNA-polymerase family A (pol I) signature 641 656 2.7E-80 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 PRINTS PR00868 DNA-polymerase family A (pol I) signature 693 706 2.7E-80 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 PRINTS PR00868 DNA-polymerase family A (pol I) signature 776 787 2.7E-80 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 PRINTS PR00868 DNA-polymerase family A (pol I) signature 663 686 2.7E-80 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 PRINTS PR00868 DNA-polymerase family A (pol I) signature 839 852 2.7E-80 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 PRINTS PR00868 DNA-polymerase family A (pol I) signature 717 742 2.7E-80 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 PRINTS PR00868 DNA-polymerase family A (pol I) signature 808 824 2.7E-80 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 PRINTS PR00868 DNA-polymerase family A (pol I) signature 618 640 2.7E-80 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 PRINTS PR00868 DNA-polymerase family A (pol I) signature 754 765 2.7E-80 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 3 164 1.7E-51 T 23-04-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 Gene3D G3DSA:1.10.150.20 181 241 2.2E-29 T 23-04-2016 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 SMART SM00482 649 856 2.4E-116 T 23-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 Gene3D G3DSA:1.10.150.20 675 781 8.1E-37 T 23-04-2016 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 Gene3D G3DSA:1.20.1060.10 507 626 2.1E-37 T 23-04-2016 SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 SUPERFAMILY SSF88723 1 164 9.81E-56 T 23-04-2016 IPR029060 PIN domain-like SD28_RS00385 6999f7bc2a20c2bca9f6e334c7eed996 892 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 166 260 2.2E-32 T 23-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 SD28_RS06505 1d471040d828d7e3a099a849dc1db979 402 PANTHER PTHR23135:SF12 1 360 2.9E-94 T 23-04-2016 SD28_RS06505 1d471040d828d7e3a099a849dc1db979 402 Gene3D G3DSA:3.40.1190.10 35 238 1.1E-12 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS06505 1d471040d828d7e3a099a849dc1db979 402 PANTHER PTHR23135 1 360 2.9E-94 T 23-04-2016 SD28_RS06505 1d471040d828d7e3a099a849dc1db979 402 SUPERFAMILY SSF53623 32 223 1.15E-16 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS06505 1d471040d828d7e3a099a849dc1db979 402 TIGRFAM TIGR04012 poly_gGlu_PgsB: poly-gamma-glutamate synthase PgsB 5 392 1.4E-155 T 23-04-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 SD28_RS06505 1d471040d828d7e3a099a849dc1db979 402 Pfam PF08245 Mur ligase middle domain 37 199 1.8E-8 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS06505 1d471040d828d7e3a099a849dc1db979 402 PRINTS PR01758 Capsule biosynthesis protein CapB signature 296 311 6.3E-29 T 23-04-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 SD28_RS06505 1d471040d828d7e3a099a849dc1db979 402 PRINTS PR01758 Capsule biosynthesis protein CapB signature 261 278 6.3E-29 T 23-04-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 SD28_RS06505 1d471040d828d7e3a099a849dc1db979 402 PRINTS PR01758 Capsule biosynthesis protein CapB signature 59 76 6.3E-29 T 23-04-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 SD28_RS06505 1d471040d828d7e3a099a849dc1db979 402 PRINTS PR01758 Capsule biosynthesis protein CapB signature 140 155 6.3E-29 T 23-04-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 SD28_RS06505 1d471040d828d7e3a099a849dc1db979 402 PRINTS PR01758 Capsule biosynthesis protein CapB signature 111 126 6.3E-29 T 23-04-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 SD28_RS06505 1d471040d828d7e3a099a849dc1db979 402 PRINTS PR01758 Capsule biosynthesis protein CapB signature 199 216 6.3E-29 T 23-04-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 SD28_RS06505 1d471040d828d7e3a099a849dc1db979 402 PRINTS PR01758 Capsule biosynthesis protein CapB signature 36 52 6.3E-29 T 23-04-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 SD28_RS04715 2bf418f727d3734ac225b9c285d68b0f 219 PANTHER PTHR30353:SF0 1 218 5.4E-66 T 23-04-2016 SD28_RS04715 2bf418f727d3734ac225b9c285d68b0f 219 Pfam PF09335 SNARE associated Golgi protein 49 171 1.5E-20 T 23-04-2016 IPR032816 SNARE associated Golgi protein SD28_RS04715 2bf418f727d3734ac225b9c285d68b0f 219 PANTHER PTHR30353 1 218 5.4E-66 T 23-04-2016 IPR032818 DedA family SD28_RS03455 bc3bc96e23c36c031f79fd6478f0096c 88 ProSitePatterns PS00362 Ribosomal protein S15 signature. 38 68 - T 23-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS03455 bc3bc96e23c36c031f79fd6478f0096c 88 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 87 6.0E-34 T 23-04-2016 SD28_RS03455 bc3bc96e23c36c031f79fd6478f0096c 88 Gene3D G3DSA:1.10.287.10 2 88 3.2E-39 T 23-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 SD28_RS03455 bc3bc96e23c36c031f79fd6478f0096c 88 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 2 88 22.132 T 23-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 SD28_RS03455 bc3bc96e23c36c031f79fd6478f0096c 88 PANTHER PTHR23321 2 88 3.3E-43 T 23-04-2016 SD28_RS03455 bc3bc96e23c36c031f79fd6478f0096c 88 SUPERFAMILY SSF47060 1 88 8.24E-36 T 23-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 SD28_RS03455 bc3bc96e23c36c031f79fd6478f0096c 88 Pfam PF00312 Ribosomal protein S15 7 87 1.2E-37 T 23-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS03455 bc3bc96e23c36c031f79fd6478f0096c 88 SMART SM01387 7 87 5.4E-52 T 23-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS03455 bc3bc96e23c36c031f79fd6478f0096c 88 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 4 88 1.6E-38 T 23-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 SD28_RS00615 37710ede1397f0cc1836f4c11937b721 345 SMART SM01230 91 343 1.1E-39 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 SD28_RS00615 37710ede1397f0cc1836f4c11937b721 345 Gene3D G3DSA:3.30.590.10 95 342 5.1E-55 T 23-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 SD28_RS00615 37710ede1397f0cc1836f4c11937b721 345 SUPERFAMILY SSF54368 3 87 1.7E-11 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 SD28_RS00615 37710ede1397f0cc1836f4c11937b721 345 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 228 244 - T 23-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 SD28_RS00615 37710ede1397f0cc1836f4c11937b721 345 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 4 84 4.8E-17 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 SD28_RS00615 37710ede1397f0cc1836f4c11937b721 345 ProSitePatterns PS00180 Glutamine synthetase signature 1. 43 60 - T 23-04-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 SD28_RS00615 37710ede1397f0cc1836f4c11937b721 345 Pfam PF00120 Glutamine synthetase, catalytic domain 95 246 4.0E-8 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 SD28_RS00615 37710ede1397f0cc1836f4c11937b721 345 PANTHER PTHR20852 3 342 1.9E-127 T 23-04-2016 SD28_RS00615 37710ede1397f0cc1836f4c11937b721 345 SUPERFAMILY SSF55931 92 343 5.49E-55 T 23-04-2016 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 8 378 2.3E-115 T 23-04-2016 IPR020823 Cell division protein FtsA GO:0007049 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 PIRSF PIRSF003101 4 418 6.6E-119 T 23-04-2016 IPR020823 Cell division protein FtsA GO:0007049 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 PANTHER PTHR32432:SF4 10 403 4.1E-112 T 23-04-2016 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 Gene3D G3DSA:3.30.1490.110 101 166 1.9E-10 T 23-04-2016 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 Gene3D G3DSA:3.90.640.10 233 296 7.9E-16 T 23-04-2016 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 Hamap MF_02033 Cell division protein FtsA [ftsA]. 4 418 27.58 T 23-04-2016 IPR020823 Cell division protein FtsA GO:0007049 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 PANTHER PTHR32432 10 403 4.1E-112 T 23-04-2016 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 SMART SM00842 8 194 1.7E-67 T 23-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 Pfam PF14450 Cell division protein FtsA 205 374 1.1E-21 T 23-04-2016 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 Pfam PF14450 Cell division protein FtsA 9 180 3.9E-8 T 23-04-2016 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 SUPERFAMILY SSF53067 8 195 6.15E-42 T 23-04-2016 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 Gene3D G3DSA:3.30.420.40 297 348 4.3E-25 T 23-04-2016 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 Gene3D G3DSA:3.30.420.40 208 232 4.3E-25 T 23-04-2016 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 Pfam PF02491 SHS2 domain inserted in FTSA 85 159 2.8E-20 T 23-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 SUPERFAMILY SSF53067 196 377 1.51E-36 T 23-04-2016 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 Gene3D G3DSA:3.30.420.40 167 207 1.9E-14 T 23-04-2016 SD28_RS01740 d90ba4ec9f3a45a7a10c176967b0ef3b 418 Gene3D G3DSA:3.30.420.40 6 81 1.9E-14 T 23-04-2016 SD28_RS05460 fd44a4179340d8248d89f2f3758f0f72 463 Pfam PF03441 FAD binding domain of DNA photolyase 263 461 1.4E-78 T 23-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain SD28_RS05460 fd44a4179340d8248d89f2f3758f0f72 463 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 312 324 - T 23-04-2016 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal SD28_RS05460 fd44a4179340d8248d89f2f3758f0f72 463 SUPERFAMILY SSF52425 3 169 1.83E-49 T 23-04-2016 IPR006050 DNA photolyase, N-terminal SD28_RS05460 fd44a4179340d8248d89f2f3758f0f72 463 PANTHER PTHR11455 2 463 7.8E-175 T 23-04-2016 SD28_RS05460 fd44a4179340d8248d89f2f3758f0f72 463 Gene3D G3DSA:1.10.579.10 274 462 6.5E-72 T 23-04-2016 SD28_RS05460 fd44a4179340d8248d89f2f3758f0f72 463 Pfam PF00875 DNA photolyase 6 152 8.7E-40 T 23-04-2016 IPR006050 DNA photolyase, N-terminal SD28_RS05460 fd44a4179340d8248d89f2f3758f0f72 463 Gene3D G3DSA:1.25.40.80 139 273 4.0E-38 T 23-04-2016 SD28_RS05460 fd44a4179340d8248d89f2f3758f0f72 463 SUPERFAMILY SSF48173 191 462 5.63E-108 T 23-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain SD28_RS05460 fd44a4179340d8248d89f2f3758f0f72 463 Gene3D G3DSA:3.40.50.620 2 138 2.6E-40 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS05460 fd44a4179340d8248d89f2f3758f0f72 463 PRINTS PR00147 DNA photolyase signature 134 150 2.4E-22 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 SD28_RS05460 fd44a4179340d8248d89f2f3758f0f72 463 PRINTS PR00147 DNA photolyase signature 312 328 2.4E-22 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 SD28_RS05460 fd44a4179340d8248d89f2f3758f0f72 463 PRINTS PR00147 DNA photolyase signature 371 385 2.4E-22 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 SD28_RS05460 fd44a4179340d8248d89f2f3758f0f72 463 PRINTS PR00147 DNA photolyase signature 332 350 2.4E-22 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 SD28_RS05460 fd44a4179340d8248d89f2f3758f0f72 463 PANTHER PTHR11455:SF18 2 463 7.8E-175 T 23-04-2016 SD28_RS01015 14d1f025a8b3836e8a01a5e4321ce741 257 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 257 2.3E-63 T 23-04-2016 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS01015 14d1f025a8b3836e8a01a5e4321ce741 257 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 87 4.4E-23 T 23-04-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 SD28_RS01015 14d1f025a8b3836e8a01a5e4321ce741 257 PANTHER PTHR21089:SF2 3 257 8.4E-69 T 23-04-2016 SD28_RS01015 14d1f025a8b3836e8a01a5e4321ce741 257 Gene3D G3DSA:3.40.192.10 2 109 1.3E-30 T 23-04-2016 SD28_RS01015 14d1f025a8b3836e8a01a5e4321ce741 257 Gene3D G3DSA:3.40.50.720 110 245 2.5E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS01015 14d1f025a8b3836e8a01a5e4321ce741 257 PANTHER PTHR21089 3 257 8.4E-69 T 23-04-2016 SD28_RS01015 14d1f025a8b3836e8a01a5e4321ce741 257 SUPERFAMILY SSF53223 3 102 1.5E-22 T 23-04-2016 SD28_RS01015 14d1f025a8b3836e8a01a5e4321ce741 257 SUPERFAMILY SSF51735 104 256 1.75E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS01015 14d1f025a8b3836e8a01a5e4321ce741 257 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 119 194 3.5E-13 T 23-04-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase SD28_RS04060 21e142f28381187b0320036ffdc1b982 338 Pfam PF00529 HlyD membrane-fusion protein of T1SS 135 336 6.3E-9 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 SD28_RS04060 21e142f28381187b0320036ffdc1b982 338 SUPERFAMILY SSF111369 124 159 2.75E-12 T 23-04-2016 SD28_RS04060 21e142f28381187b0320036ffdc1b982 338 SUPERFAMILY SSF111369 188 273 2.75E-12 T 23-04-2016 SD28_RS04060 21e142f28381187b0320036ffdc1b982 338 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 57 283 1.5E-20 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain SD28_RS04060 21e142f28381187b0320036ffdc1b982 338 Gene3D G3DSA:2.40.50.100 209 240 2.8E-18 T 23-04-2016 SD28_RS04060 21e142f28381187b0320036ffdc1b982 338 Gene3D G3DSA:2.40.50.100 60 92 2.8E-18 T 23-04-2016 SD28_RS04060 21e142f28381187b0320036ffdc1b982 338 PANTHER PTHR30386:SF0 23 337 8.8E-75 T 23-04-2016 SD28_RS04060 21e142f28381187b0320036ffdc1b982 338 SUPERFAMILY SSF111369 58 114 1.27E-9 T 23-04-2016 SD28_RS04060 21e142f28381187b0320036ffdc1b982 338 PANTHER PTHR30386 23 337 8.8E-75 T 23-04-2016 SD28_RS05760 d2e83207c8f812ffc53c76e9e4e6976e 269 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 80 237 3.0E-52 T 23-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 SD28_RS05760 d2e83207c8f812ffc53c76e9e4e6976e 269 SMART SM00363 12 69 3.2E-11 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 SD28_RS05760 d2e83207c8f812ffc53c76e9e4e6976e 269 Gene3D G3DSA:3.10.290.10 12 64 6.2E-17 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 SD28_RS05760 d2e83207c8f812ffc53c76e9e4e6976e 269 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 114 128 - T 23-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 SD28_RS05760 d2e83207c8f812ffc53c76e9e4e6976e 269 SUPERFAMILY SSF55174 12 99 2.06E-15 T 23-04-2016 SD28_RS05760 d2e83207c8f812ffc53c76e9e4e6976e 269 Pfam PF00849 RNA pseudouridylate synthase 76 210 1.2E-16 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS05760 d2e83207c8f812ffc53c76e9e4e6976e 269 SUPERFAMILY SSF55120 74 246 1.37E-39 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS05760 d2e83207c8f812ffc53c76e9e4e6976e 269 PANTHER PTHR21600:SF2 1 256 2.0E-83 T 23-04-2016 SD28_RS05760 d2e83207c8f812ffc53c76e9e4e6976e 269 Pfam PF01479 S4 domain 12 56 6.3E-13 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 SD28_RS05760 d2e83207c8f812ffc53c76e9e4e6976e 269 PANTHER PTHR21600 1 256 2.0E-83 T 23-04-2016 SD28_RS07305 0afcf84e59683cfbd9a56e0c0b1b4149 455 Pfam PF12804 MobA-like NTP transferase domain 5 128 2.9E-23 T 23-04-2016 IPR025877 MobA-like NTP transferase SD28_RS07305 0afcf84e59683cfbd9a56e0c0b1b4149 455 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 392 426 3.9E-7 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS07305 0afcf84e59683cfbd9a56e0c0b1b4149 455 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 315 349 1.5E-4 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS07305 0afcf84e59683cfbd9a56e0c0b1b4149 455 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 263 296 2.9E-8 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS07305 0afcf84e59683cfbd9a56e0c0b1b4149 455 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 400 428 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 SD28_RS07305 0afcf84e59683cfbd9a56e0c0b1b4149 455 PANTHER PTHR22572 4 446 8.6E-207 T 23-04-2016 SD28_RS07305 0afcf84e59683cfbd9a56e0c0b1b4149 455 SUPERFAMILY SSF53448 1 249 3.3E-63 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS07305 0afcf84e59683cfbd9a56e0c0b1b4149 455 Gene3D G3DSA:2.160.10.10 241 321 1.1E-20 T 23-04-2016 SD28_RS07305 0afcf84e59683cfbd9a56e0c0b1b4149 455 PANTHER PTHR22572:SF115 4 446 8.6E-207 T 23-04-2016 SD28_RS07305 0afcf84e59683cfbd9a56e0c0b1b4149 455 Gene3D G3DSA:2.160.10.10 322 451 5.8E-37 T 23-04-2016 SD28_RS07305 0afcf84e59683cfbd9a56e0c0b1b4149 455 SUPERFAMILY SSF51161 252 434 3.5E-52 T 23-04-2016 IPR011004 Trimeric LpxA-like SD28_RS07305 0afcf84e59683cfbd9a56e0c0b1b4149 455 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 452 3.2E-189 T 23-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 SD28_RS07305 0afcf84e59683cfbd9a56e0c0b1b4149 455 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 449 41.806 T 23-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 SD28_RS07305 0afcf84e59683cfbd9a56e0c0b1b4149 455 Gene3D G3DSA:3.90.550.10 1 240 1.9E-71 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS03355 89166871cfeb49983fc5bcad2f5c5351 386 SUPERFAMILY SSF55347 124 266 1.54E-61 T 23-04-2016 SD28_RS03355 89166871cfeb49983fc5bcad2f5c5351 386 Pfam PF13288 DXP reductoisomerase C-terminal domain 263 378 9.2E-33 T 23-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS03355 89166871cfeb49983fc5bcad2f5c5351 386 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 6 379 7.7E-145 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS03355 89166871cfeb49983fc5bcad2f5c5351 386 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 7 130 1.4E-44 T 23-04-2016 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS03355 89166871cfeb49983fc5bcad2f5c5351 386 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 144 231 3.8E-39 T 23-04-2016 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS03355 89166871cfeb49983fc5bcad2f5c5351 386 PIRSF PIRSF006205 4 386 6.0E-150 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS03355 89166871cfeb49983fc5bcad2f5c5351 386 SUPERFAMILY SSF51735 6 148 3.83E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS03355 89166871cfeb49983fc5bcad2f5c5351 386 Gene3D G3DSA:3.40.50.720 3 148 1.2E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS03355 89166871cfeb49983fc5bcad2f5c5351 386 Gene3D G3DSA:1.10.1740.10 304 385 5.6E-22 T 23-04-2016 SD28_RS03355 89166871cfeb49983fc5bcad2f5c5351 386 SUPERFAMILY SSF69055 295 384 1.18E-20 T 23-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS03355 89166871cfeb49983fc5bcad2f5c5351 386 PANTHER PTHR30525 3 378 5.0E-193 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS03355 89166871cfeb49983fc5bcad2f5c5351 386 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 7 384 45.03 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 SD28_RS05645 2944d367da1acabd2ec73222364fb4ab 390 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 295 308 - T 23-04-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 UniPathway: UPA00232 SD28_RS05645 2944d367da1acabd2ec73222364fb4ab 390 SUPERFAMILY SSF51905 5 177 1.19E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS05645 2944d367da1acabd2ec73222364fb4ab 390 SUPERFAMILY SSF51905 268 385 1.19E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS05645 2944d367da1acabd2ec73222364fb4ab 390 PANTHER PTHR13789 4 390 4.5E-116 T 23-04-2016 SD28_RS05645 2944d367da1acabd2ec73222364fb4ab 390 PANTHER PTHR13789:SF5 4 390 4.5E-116 T 23-04-2016 SD28_RS05645 2944d367da1acabd2ec73222364fb4ab 390 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 389 4.8E-117 T 23-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 SD28_RS05645 2944d367da1acabd2ec73222364fb4ab 390 Gene3D G3DSA:3.50.50.60 269 357 8.2E-49 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS05645 2944d367da1acabd2ec73222364fb4ab 390 Gene3D G3DSA:3.50.50.60 4 182 8.2E-49 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS05645 2944d367da1acabd2ec73222364fb4ab 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 2.2E-22 T 23-04-2016 SD28_RS05645 2944d367da1acabd2ec73222364fb4ab 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 2.2E-22 T 23-04-2016 SD28_RS05645 2944d367da1acabd2ec73222364fb4ab 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 2.2E-22 T 23-04-2016 SD28_RS05645 2944d367da1acabd2ec73222364fb4ab 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 2.2E-22 T 23-04-2016 SD28_RS05645 2944d367da1acabd2ec73222364fb4ab 390 Pfam PF01494 FAD binding domain 6 345 3.1E-35 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 SD28_RS00975 f9e94e9ccedee53b983da19d4d762204 358 Pfam PF03054 tRNA methyl transferase 3 357 1.4E-140 T 23-04-2016 SD28_RS00975 f9e94e9ccedee53b983da19d4d762204 358 Gene3D G3DSA:2.30.30.280 210 277 1.6E-29 T 23-04-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 SD28_RS00975 f9e94e9ccedee53b983da19d4d762204 358 SUPERFAMILY SSF52402 2 241 2.12E-58 T 23-04-2016 SD28_RS00975 f9e94e9ccedee53b983da19d4d762204 358 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 3 357 7.6E-141 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 SD28_RS00975 f9e94e9ccedee53b983da19d4d762204 358 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 3 358 38.959 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 SD28_RS00975 f9e94e9ccedee53b983da19d4d762204 358 Gene3D G3DSA:3.40.50.620 2 208 1.2E-95 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS00975 f9e94e9ccedee53b983da19d4d762204 358 PANTHER PTHR11933 1 357 6.6E-188 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 SD28_RS00975 f9e94e9ccedee53b983da19d4d762204 358 Gene3D G3DSA:2.40.30.10 279 357 3.1E-31 T 23-04-2016 SD28_RS00975 f9e94e9ccedee53b983da19d4d762204 358 PANTHER PTHR11933:SF10 1 357 6.6E-188 T 23-04-2016 SD28_RS05225 47721978d82a4926cab8e7f6c896dd12 395 PIRSF PIRSF016049 1 394 6.1E-163 T 23-04-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242|UniPathway: UPA00246 SD28_RS05225 47721978d82a4926cab8e7f6c896dd12 395 PANTHER PTHR30387 1 393 1.7E-145 T 23-04-2016 SD28_RS05225 47721978d82a4926cab8e7f6c896dd12 395 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 395 189.043 T 23-04-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242|UniPathway: UPA00246 SD28_RS05225 47721978d82a4926cab8e7f6c896dd12 395 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 2 392 8.4E-158 T 23-04-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242|UniPathway: UPA00246 SD28_RS05225 47721978d82a4926cab8e7f6c896dd12 395 Pfam PF03786 D-mannonate dehydratase (UxuA) 2 389 8.1E-135 T 23-04-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242|UniPathway: UPA00246 SD28_RS05225 47721978d82a4926cab8e7f6c896dd12 395 SUPERFAMILY SSF51658 1 383 1.39E-65 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain SD28_RS05225 47721978d82a4926cab8e7f6c896dd12 395 PANTHER PTHR30387:SF2 1 393 1.7E-145 T 23-04-2016 SD28_RS05225 47721978d82a4926cab8e7f6c896dd12 395 Gene3D G3DSA:3.20.20.150 1 392 1.8E-135 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain SD28_RS05740 6d52d2c4be118267bbd491ec437ec30e 322 PANTHER PTHR10210:SF41 1 321 1.5E-163 T 23-04-2016 SD28_RS05740 6d52d2c4be118267bbd491ec437ec30e 322 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 6 316 3.5E-113 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 SD28_RS05740 6d52d2c4be118267bbd491ec437ec30e 322 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 23-04-2016 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: REACT_474|UniPathway: UPA00087 SD28_RS05740 6d52d2c4be118267bbd491ec437ec30e 322 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 5 316 44.874 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 SD28_RS05740 6d52d2c4be118267bbd491ec437ec30e 322 Gene3D G3DSA:3.40.50.2020 161 290 2.1E-51 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS05740 6d52d2c4be118267bbd491ec437ec30e 322 SMART SM01400 5 121 7.0E-74 T 23-04-2016 SD28_RS05740 6d52d2c4be118267bbd491ec437ec30e 322 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 5 121 2.6E-47 T 23-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 SD28_RS05740 6d52d2c4be118267bbd491ec437ec30e 322 Gene3D G3DSA:3.40.50.2020 1 160 7.4E-69 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS05740 6d52d2c4be118267bbd491ec437ec30e 322 PANTHER PTHR10210 1 321 1.5E-163 T 23-04-2016 SD28_RS05740 6d52d2c4be118267bbd491ec437ec30e 322 Pfam PF14572 Phosphoribosyl synthetase-associated domain 205 316 2.5E-25 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 SD28_RS05740 6d52d2c4be118267bbd491ec437ec30e 322 SUPERFAMILY SSF53271 69 308 2.73E-61 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS05595 e68cb18f25a3a22bacb2b224c96df391 442 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 6 442 8.0E-184 T 23-04-2016 SD28_RS05595 e68cb18f25a3a22bacb2b224c96df391 442 SMART SM00729 149 369 4.9E-53 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 SD28_RS05595 e68cb18f25a3a22bacb2b224c96df391 442 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 153 173 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 SD28_RS05595 e68cb18f25a3a22bacb2b224c96df391 442 Pfam PF01938 TRAM domain 380 442 6.5E-18 T 23-04-2016 IPR002792 TRAM domain SD28_RS05595 e68cb18f25a3a22bacb2b224c96df391 442 PANTHER PTHR11918:SF43 1 442 2.5E-189 T 23-04-2016 SD28_RS05595 e68cb18f25a3a22bacb2b224c96df391 442 Gene3D G3DSA:3.80.30.20 148 381 2.1E-77 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe SD28_RS05595 e68cb18f25a3a22bacb2b224c96df391 442 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 5 442 70.838 T 23-04-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 SD28_RS05595 e68cb18f25a3a22bacb2b224c96df391 442 Pfam PF00919 Uncharacterized protein family UPF0004 6 106 5.5E-29 T 23-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 SD28_RS05595 e68cb18f25a3a22bacb2b224c96df391 442 Pfam PF04055 Radical SAM superfamily 153 327 9.8E-28 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 SD28_RS05595 e68cb18f25a3a22bacb2b224c96df391 442 PANTHER PTHR11918 1 442 2.5E-189 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein SD28_RS05595 e68cb18f25a3a22bacb2b224c96df391 442 SUPERFAMILY SSF102114 127 374 1.29E-59 T 23-04-2016 SD28_RS05595 e68cb18f25a3a22bacb2b224c96df391 442 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 6 439 3.8E-151 T 23-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 SUPERFAMILY SSF82693 790 839 8.37E-18 T 23-04-2016 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 SUPERFAMILY SSF82693 650 698 8.37E-18 T 23-04-2016 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 SUPERFAMILY SSF82714 182 265 2.22E-14 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 1.1E-69 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 1.1E-69 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.1E-69 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 1.1E-69 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 1.1E-69 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.1E-69 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 PRINTS PR00702 Acriflavin resistance protein family signature 603 617 1.1E-69 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 1.1E-69 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 1.1E-69 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 Gene3D G3DSA:3.30.70.1430 41 137 1.6E-24 T 23-04-2016 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 Gene3D G3DSA:3.30.70.1430 555 650 5.5E-8 T 23-04-2016 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 SUPERFAMILY SSF82693 553 650 2.27E-15 T 23-04-2016 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 SUPERFAMILY SSF82693 136 181 7.59E-16 T 23-04-2016 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 SUPERFAMILY SSF82693 267 323 7.59E-16 T 23-04-2016 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 Gene3D G3DSA:1.10.3850.10 274 490 3.1E-57 T 23-04-2016 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 Gene3D G3DSA:1.10.3850.10 798 1016 2.2E-50 T 23-04-2016 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 PANTHER PTHR32063:SF28 1 1030 0.0 T 23-04-2016 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 SUPERFAMILY SSF82714 699 770 8.5E-14 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 SUPERFAMILY SSF82693 40 129 1.03E-21 T 23-04-2016 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 SUPERFAMILY SSF82866 291 488 1.7E-47 T 23-04-2016 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 PANTHER PTHR32063 1 1030 0.0 T 23-04-2016 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 Pfam PF00873 AcrB/AcrD/AcrF family 4 1015 3.6E-250 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 SUPERFAMILY SSF82866 814 1015 1.06E-38 T 23-04-2016 SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 Gene3D G3DSA:3.30.2090.10 182 265 4.7E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SD28_RS00435 68d32abd39c185451669c578de4f3dde 1041 Gene3D G3DSA:3.30.2090.10 698 791 5.6E-15 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SD28_RS05540 b31a0212007b8e58f99b4ec299374929 178 Pfam PF04116 Fatty acid hydroxylase superfamily 46 176 1.1E-19 T 23-04-2016 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 SD28_RS05540 b31a0212007b8e58f99b4ec299374929 178 PANTHER PTHR12863 35 176 2.6E-14 T 23-04-2016 SD28_RS05540 b31a0212007b8e58f99b4ec299374929 178 PANTHER PTHR12863:SF1 35 176 2.6E-14 T 23-04-2016 SD28_RS07160 d3c4d246ce5bd91d855c582dd7c5d2b9 91 SUPERFAMILY SSF75471 2 90 4.45E-27 T 23-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 SD28_RS07160 d3c4d246ce5bd91d855c582dd7c5d2b9 91 SMART SM01103 1 84 2.4E-35 T 23-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 SD28_RS07160 d3c4d246ce5bd91d855c582dd7c5d2b9 91 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 84 3.2E-21 T 23-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 SD28_RS07160 d3c4d246ce5bd91d855c582dd7c5d2b9 91 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 7 91 3.0E-30 T 23-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 SD28_RS07160 d3c4d246ce5bd91d855c582dd7c5d2b9 91 Gene3D G3DSA:3.30.110.60 2 90 7.7E-28 T 23-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 SD28_RS07160 d3c4d246ce5bd91d855c582dd7c5d2b9 91 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 90 4.3E-27 T 23-04-2016 IPR017924 RNA-binding protein YhbY GO:0003723 SD28_RS07160 d3c4d246ce5bd91d855c582dd7c5d2b9 91 PANTHER PTHR31846 3 91 1.5E-21 T 23-04-2016 SD28_RS07130 0f2ff92a8de561635a5e31873657a032 469 Pfam PF13520 Amino acid permease 31 441 7.0E-50 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS07130 0f2ff92a8de561635a5e31873657a032 469 PIRSF PIRSF006060 1 469 2.1E-53 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS07130 0f2ff92a8de561635a5e31873657a032 469 PANTHER PTHR11785:SF216 10 453 2.2E-88 T 23-04-2016 SD28_RS07130 0f2ff92a8de561635a5e31873657a032 469 PANTHER PTHR11785 10 453 2.2E-88 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS07685 312b52b54893fd6e79cc8fc2a07c7057 209 PIRSF PIRSF009320 4 207 2.9E-31 T 23-04-2016 SD28_RS07685 312b52b54893fd6e79cc8fc2a07c7057 209 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 8 146 3.0E-24 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain SD28_RS07685 312b52b54893fd6e79cc8fc2a07c7057 209 Gene3D G3DSA:3.40.50.300 5 204 6.7E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07685 312b52b54893fd6e79cc8fc2a07c7057 209 PANTHER PTHR13696 4 206 2.2E-27 T 23-04-2016 SD28_RS07685 312b52b54893fd6e79cc8fc2a07c7057 209 SUPERFAMILY SSF52540 4 206 6.44E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 SUPERFAMILY SSF81442 55 572 5.76E-175 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 25 665 0.0 T 23-04-2016 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 Gene3D G3DSA:1.20.210.10 51 597 2.6E-186 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 PRINTS PR01165 Cytochrome c oxidase subunit I signature 239 258 1.0E-93 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 PRINTS PR01165 Cytochrome c oxidase subunit I signature 360 381 1.0E-93 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 PRINTS PR01165 Cytochrome c oxidase subunit I signature 136 160 1.0E-93 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 PRINTS PR01165 Cytochrome c oxidase subunit I signature 210 228 1.0E-93 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 PRINTS PR01165 Cytochrome c oxidase subunit I signature 423 442 1.0E-93 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 PRINTS PR01165 Cytochrome c oxidase subunit I signature 395 413 1.0E-93 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 PRINTS PR01165 Cytochrome c oxidase subunit I signature 336 351 1.0E-93 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 PRINTS PR01165 Cytochrome c oxidase subunit I signature 178 190 1.0E-93 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 PRINTS PR01165 Cytochrome c oxidase subunit I signature 59 84 1.0E-93 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 PRINTS PR01165 Cytochrome c oxidase subunit I signature 290 311 1.0E-93 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 PRINTS PR01165 Cytochrome c oxidase subunit I signature 473 494 1.0E-93 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 PRINTS PR01165 Cytochrome c oxidase subunit I signature 109 132 1.0E-93 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 292 346 - T 23-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 PANTHER PTHR10422:SF26 45 632 0.0 T 23-04-2016 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 PANTHER PTHR10422 45 632 0.0 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS00815 ffbc669bfab7316f820c16cbe7ff4f3a 675 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 68 517 2.4E-137 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 SMART SM00382 198 344 9.6E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS01675 1b9c137bc953118a896859106242c57d 858 SMART SM00382 599 768 4.8E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS01675 1b9c137bc953118a896859106242c57d 858 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 856 0.0 T 23-04-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 710 724 3.1E-41 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 677 695 3.1E-41 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 603 621 3.1E-41 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 648 666 3.1E-41 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 Gene3D G3DSA:3.40.50.300 159 342 1.3E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01675 1b9c137bc953118a896859106242c57d 858 Gene3D G3DSA:1.10.8.60 779 857 6.7E-30 T 23-04-2016 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 767 847 8.4E-26 T 23-04-2016 IPR019489 Clp ATPase, C-terminal SD28_RS01675 1b9c137bc953118a896859106242c57d 858 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 633 651 - T 23-04-2016 IPR028299 ClpA/B, conserved site 2 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 PANTHER PTHR11638:SF18 1 856 0.0 T 23-04-2016 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 Gene3D G3DSA:1.10.8.60 343 428 6.2E-37 T 23-04-2016 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 PANTHER PTHR11638 1 856 0.0 T 23-04-2016 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 Pfam PF07724 AAA domain (Cdc48 subfamily) 598 760 9.0E-56 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 Gene3D G3DSA:1.10.1780.10 1 148 2.0E-30 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 23-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 SUPERFAMILY SSF52540 548 840 1.74E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01675 1b9c137bc953118a896859106242c57d 858 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 96 145 5.3E-8 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 1.3E-4 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 Gene3D G3DSA:3.40.50.300 552 778 1.6E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01675 1b9c137bc953118a896859106242c57d 858 SMART SM01086 767 856 6.3E-37 T 23-04-2016 IPR019489 Clp ATPase, C-terminal SD28_RS01675 1b9c137bc953118a896859106242c57d 858 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 335 9.9E-13 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 SD28_RS01675 1b9c137bc953118a896859106242c57d 858 SUPERFAMILY SSF52540 160 547 4.65E-98 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01675 1b9c137bc953118a896859106242c57d 858 SUPERFAMILY SSF81923 4 156 2.55E-30 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 SD28_RS05730 038d279fe517230ebb42f99ebb5a67ac 415 Pfam PF00571 CBS domain 280 324 1.7E-4 T 23-04-2016 IPR000644 CBS domain SD28_RS05730 038d279fe517230ebb42f99ebb5a67ac 415 Pfam PF03471 Transporter associated domain 339 414 7.8E-14 T 23-04-2016 IPR005170 Transporter-associated domain SD28_RS05730 038d279fe517230ebb42f99ebb5a67ac 415 PANTHER PTHR22777 1 415 6.1E-113 T 23-04-2016 SD28_RS05730 038d279fe517230ebb42f99ebb5a67ac 415 SUPERFAMILY SSF54631 196 336 6.25E-25 T 23-04-2016 SD28_RS05730 038d279fe517230ebb42f99ebb5a67ac 415 SMART SM01091 338 415 4.6E-11 T 23-04-2016 IPR005170 Transporter-associated domain SD28_RS05730 038d279fe517230ebb42f99ebb5a67ac 415 SUPERFAMILY SSF56176 336 414 2.29E-14 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 SD28_RS05730 038d279fe517230ebb42f99ebb5a67ac 415 Pfam PF01595 Domain of unknown function DUF21 9 181 1.1E-46 T 23-04-2016 IPR002550 Domain of unknown function DUF21 SD28_RS05730 038d279fe517230ebb42f99ebb5a67ac 415 Gene3D G3DSA:3.10.580.10 188 317 5.9E-14 T 23-04-2016 SD28_RS05730 038d279fe517230ebb42f99ebb5a67ac 415 Gene3D G3DSA:3.30.465.10 318 413 8.5E-18 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 SD28_RS06835 a23ac41056fd8edc484eeee81d9fbe66 395 ProSitePatterns PS00737 Thiolases signature 2. 341 357 - T 23-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 SD28_RS06835 a23ac41056fd8edc484eeee81d9fbe66 395 Pfam PF00108 Thiolase, N-terminal domain 5 264 1.6E-76 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 SD28_RS06835 a23ac41056fd8edc484eeee81d9fbe66 395 PIRSF PIRSF000429 1 395 2.6E-130 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 SD28_RS06835 a23ac41056fd8edc484eeee81d9fbe66 395 Gene3D G3DSA:3.40.47.10 146 186 2.0E-65 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 SD28_RS06835 a23ac41056fd8edc484eeee81d9fbe66 395 Gene3D G3DSA:3.40.47.10 279 393 2.0E-65 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 SD28_RS06835 a23ac41056fd8edc484eeee81d9fbe66 395 PANTHER PTHR18919 1 395 7.6E-174 T 23-04-2016 SD28_RS06835 a23ac41056fd8edc484eeee81d9fbe66 395 SUPERFAMILY SSF53901 273 393 1.84E-42 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 SD28_RS06835 a23ac41056fd8edc484eeee81d9fbe66 395 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 393 1.2E-137 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 SD28_RS06835 a23ac41056fd8edc484eeee81d9fbe66 395 Pfam PF02803 Thiolase, C-terminal domain 272 393 4.9E-45 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 SD28_RS06835 a23ac41056fd8edc484eeee81d9fbe66 395 SUPERFAMILY SSF53901 4 272 4.56E-73 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 SD28_RS06835 a23ac41056fd8edc484eeee81d9fbe66 395 ProSitePatterns PS00099 Thiolases active site. 376 389 - T 23-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 SD28_RS06835 a23ac41056fd8edc484eeee81d9fbe66 395 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 23-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 SD28_RS06835 a23ac41056fd8edc484eeee81d9fbe66 395 Gene3D G3DSA:3.40.47.10 187 278 5.7E-66 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 SD28_RS06835 a23ac41056fd8edc484eeee81d9fbe66 395 Gene3D G3DSA:3.40.47.10 5 126 5.7E-66 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 SD28_RS06230 4b76c005f14dd3fdcc7cffc40a642340 206 Gene3D G3DSA:1.20.1260.10 10 203 5.6E-79 T 23-04-2016 IPR012347 Ferritin-related SD28_RS06230 4b76c005f14dd3fdcc7cffc40a642340 206 PANTHER PTHR42637 1 206 4.2E-57 T 23-04-2016 SD28_RS06230 4b76c005f14dd3fdcc7cffc40a642340 206 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 57 201 2.9E-56 T 23-04-2016 IPR010386 tRNA-hydroxylase MiaE KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.-|UniPathway: UPA00729 SD28_RS06230 4b76c005f14dd3fdcc7cffc40a642340 206 PIRSF PIRSF020736 1 206 8.3E-85 T 23-04-2016 IPR010386 tRNA-hydroxylase MiaE KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.-|UniPathway: UPA00729 SD28_RS06230 4b76c005f14dd3fdcc7cffc40a642340 206 SUPERFAMILY SSF47240 11 203 1.02E-71 T 23-04-2016 IPR009078 Ferritin-like superfamily SD28_RS06230 4b76c005f14dd3fdcc7cffc40a642340 206 PANTHER PTHR42637:SF1 1 206 4.2E-57 T 23-04-2016 SD28_RS04495 8ea48146cabfa7c946abd5bc04db16cf 601 Gene3D G3DSA:3.40.1360.10 243 372 1.6E-42 T 23-04-2016 SD28_RS04495 8ea48146cabfa7c946abd5bc04db16cf 601 SMART SM00493 265 336 4.1E-17 T 23-04-2016 IPR006171 Toprim domain SD28_RS04495 8ea48146cabfa7c946abd5bc04db16cf 601 Pfam PF01807 CHC2 zinc finger 6 101 1.2E-38 T 23-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 SD28_RS04495 8ea48146cabfa7c946abd5bc04db16cf 601 Gene3D G3DSA:3.90.980.10 119 242 3.1E-39 T 23-04-2016 IPR013264 DNA primase, catalytic core, N-terminal SD28_RS04495 8ea48146cabfa7c946abd5bc04db16cf 601 SUPERFAMILY SSF57783 5 100 8.16E-36 T 23-04-2016 SD28_RS04495 8ea48146cabfa7c946abd5bc04db16cf 601 PANTHER PTHR30313 4 599 4.6E-134 T 23-04-2016 SD28_RS04495 8ea48146cabfa7c946abd5bc04db16cf 601 Pfam PF10410 DnaB-helicase binding domain of primase 376 428 2.5E-5 T 23-04-2016 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 SD28_RS04495 8ea48146cabfa7c946abd5bc04db16cf 601 PIRSF PIRSF002811 2 595 2.5E-152 T 23-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 SD28_RS04495 8ea48146cabfa7c946abd5bc04db16cf 601 TIGRFAM TIGR01391 dnaG: DNA primase 5 424 1.2E-139 T 23-04-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 SD28_RS04495 8ea48146cabfa7c946abd5bc04db16cf 601 Gene3D G3DSA:3.90.580.10 2 101 8.4E-40 T 23-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 SD28_RS04495 8ea48146cabfa7c946abd5bc04db16cf 601 Hamap MF_00974 DNA primase [dnaG]. 4 564 27.385 T 23-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 SD28_RS04495 8ea48146cabfa7c946abd5bc04db16cf 601 Pfam PF08275 DNA primase catalytic core, N-terminal domain 126 253 1.2E-41 T 23-04-2016 IPR013264 DNA primase, catalytic core, N-terminal SD28_RS04495 8ea48146cabfa7c946abd5bc04db16cf 601 SMART SM00400 36 90 4.0E-33 T 23-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 SD28_RS04495 8ea48146cabfa7c946abd5bc04db16cf 601 Pfam PF13155 Toprim-like 268 356 1.4E-17 T 23-04-2016 SD28_RS04495 8ea48146cabfa7c946abd5bc04db16cf 601 SUPERFAMILY SSF56731 119 428 3.79E-99 T 23-04-2016 SD28_RS02070 b16f97f648d0a8d09c71089fc14623dd 303 SUPERFAMILY SSF53300 85 225 3.56E-7 T 23-04-2016 IPR002035 von Willebrand factor, type A SD28_RS02070 b16f97f648d0a8d09c71089fc14623dd 303 PANTHER PTHR33608:SF6 13 294 4.7E-54 T 23-04-2016 SD28_RS02070 b16f97f648d0a8d09c71089fc14623dd 303 Pfam PF01882 Protein of unknown function DUF58 48 132 1.0E-19 T 23-04-2016 IPR002881 Domain of unknown function DUF58 SD28_RS02070 b16f97f648d0a8d09c71089fc14623dd 303 PANTHER PTHR33608 13 294 4.7E-54 T 23-04-2016 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 Hamap MF_00318 Enolase [eno]. 3 413 44.279 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 PANTHER PTHR11902 5 433 2.1E-256 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 ProSitePatterns PS00164 Enolase signature. 336 349 - T 23-04-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 Gene3D G3DSA:3.30.390.10 5 126 6.4E-55 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 5 425 1.7E-206 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 PRINTS PR00148 Enolase signature 365 382 2.1E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 PRINTS PR00148 Enolase signature 108 124 2.1E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 PRINTS PR00148 Enolase signature 336 350 2.1E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 PRINTS PR00148 Enolase signature 38 52 2.1E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 PRINTS PR00148 Enolase signature 313 324 2.1E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 PRINTS PR00148 Enolase signature 162 175 2.1E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 Gene3D G3DSA:3.20.20.120 130 429 2.4E-135 T 23-04-2016 IPR029065 Enolase C-terminal domain-like SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 Pfam PF00113 Enolase, C-terminal TIM barrel domain 141 424 1.5E-132 T 23-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 SUPERFAMILY SSF51604 140 427 1.63E-129 T 23-04-2016 IPR029065 Enolase C-terminal domain-like SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 PIRSF PIRSF001400 1 427 5.5E-187 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 Pfam PF03952 Enolase, N-terminal domain 5 135 1.2E-57 T 23-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 SUPERFAMILY SSF54826 5 137 1.92E-54 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 SMART SM01193 5 135 6.4E-90 T 23-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 SD28_RS03510 6802f99cdc51b63d27d5eb361bd613ab 452 SMART SM01192 140 427 6.2E-222 T 23-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1350 0.0 T 23-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Pfam PF04563 RNA polymerase beta subunit 26 503 7.1E-38 T 23-04-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Gene3D G3DSA:3.90.1110.10 158 230 1.6E-57 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Gene3D G3DSA:3.90.1110.10 348 447 1.6E-57 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Gene3D G3DSA:3.90.1100.10 662 716 6.7E-141 T 23-04-2016 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Gene3D G3DSA:3.90.1100.10 448 594 6.7E-141 T 23-04-2016 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Gene3D G3DSA:3.90.1100.10 20 156 6.7E-141 T 23-04-2016 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Pfam PF04565 RNA polymerase Rpb2, domain 3 516 584 1.6E-29 T 23-04-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Pfam PF00562 RNA polymerase Rpb2, domain 6 721 1276 2.0E-158 T 23-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Gene3D G3DSA:2.30.150.10 595 659 4.2E-28 T 23-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 PANTHER PTHR20856:SF20 5 231 0.0 T 23-04-2016 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 PANTHER PTHR20856:SF20 1048 1142 0.0 T 23-04-2016 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 PANTHER PTHR20856:SF20 745 932 0.0 T 23-04-2016 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 PANTHER PTHR20856:SF20 342 728 0.0 T 23-04-2016 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 PANTHER PTHR20856:SF20 1194 1358 0.0 T 23-04-2016 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 SUPERFAMILY SSF64484 345 941 0.0 T 23-04-2016 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 SUPERFAMILY SSF64484 11 226 0.0 T 23-04-2016 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 SUPERFAMILY SSF64484 1053 1354 0.0 T 23-04-2016 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 PANTHER PTHR20856 5 231 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 PANTHER PTHR20856 1048 1142 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 PANTHER PTHR20856 745 932 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 PANTHER PTHR20856 342 728 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 PANTHER PTHR20856 1194 1358 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1354 11.977 T 23-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Pfam PF10385 RNA polymerase beta subunit external 1 domain 594 659 7.3E-26 T 23-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Gene3D G3DSA:2.40.50.150 830 939 8.5E-53 T 23-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Gene3D G3DSA:2.40.50.150 1059 1073 8.5E-53 T 23-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Gene3D G3DSA:2.40.50.100 718 794 2.4E-29 T 23-04-2016 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Pfam PF04560 RNA polymerase Rpb2, domain 7 1278 1352 2.8E-23 T 23-04-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1077 1089 - T 23-04-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Pfam PF04561 RNA polymerase Rpb2, domain 2 156 223 9.5E-10 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Pfam PF04561 RNA polymerase Rpb2, domain 2 358 457 3.7E-16 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Gene3D G3DSA:2.40.270.10 795 822 2.9E-87 T 23-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS02605 b3d8922ca49ada98e847443fc16b31a9 1358 Gene3D G3DSA:2.40.270.10 1074 1254 2.9E-87 T 23-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 SD28_RS06515 74d4164b514808612b99a963a88bab8a 328 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 6 322 2.6E-124 T 23-04-2016 IPR022462 Lysine-2,3-aminomutase-like SD28_RS06515 74d4164b514808612b99a963a88bab8a 328 TIGRFAM TIGR00238 TIGR00238: KamA family protein 4 317 4.0E-98 T 23-04-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase SD28_RS06515 74d4164b514808612b99a963a88bab8a 328 Gene3D G3DSA:3.20.20.70 95 301 8.2E-17 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS06515 74d4164b514808612b99a963a88bab8a 328 Pfam PF13394 4Fe-4S single cluster domain 109 186 3.8E-9 T 23-04-2016 SD28_RS06515 74d4164b514808612b99a963a88bab8a 328 SUPERFAMILY SSF102114 94 293 1.29E-25 T 23-04-2016 SD28_RS06515 74d4164b514808612b99a963a88bab8a 328 Pfam PF04055 Radical SAM superfamily 108 233 4.5E-10 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 SD28_RS06515 74d4164b514808612b99a963a88bab8a 328 PIRSF PIRSF004911 1 327 4.4E-118 T 23-04-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase SD28_RS06515 74d4164b514808612b99a963a88bab8a 328 PANTHER PTHR30538:SF1 3 321 2.2E-110 T 23-04-2016 SD28_RS06515 74d4164b514808612b99a963a88bab8a 328 PANTHER PTHR30538 3 321 2.2E-110 T 23-04-2016 SD28_RS01865 8955efcacb978ac6fbd88fa5b56b1028 773 Gene3D G3DSA:3.40.630.30 598 767 1.3E-49 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase SD28_RS01865 8955efcacb978ac6fbd88fa5b56b1028 773 PANTHER PTHR34384:SF5 8 595 2.7E-167 T 23-04-2016 SD28_RS01865 8955efcacb978ac6fbd88fa5b56b1028 773 PANTHER PTHR34384 8 595 2.7E-167 T 23-04-2016 SD28_RS01865 8955efcacb978ac6fbd88fa5b56b1028 773 Pfam PF06276 Ferric iron reductase FhuF-like transporter 405 561 9.2E-30 T 23-04-2016 IPR022770 Ferric iron reductase FhuF domain SD28_RS01865 8955efcacb978ac6fbd88fa5b56b1028 773 Pfam PF13523 Acetyltransferase (GNAT) domain 609 752 1.5E-39 T 23-04-2016 SD28_RS01865 8955efcacb978ac6fbd88fa5b56b1028 773 SMART SM01006 605 652 5.1E-10 T 23-04-2016 IPR019432 Siderophore biosynthesis protein, conserved domain SD28_RS01865 8955efcacb978ac6fbd88fa5b56b1028 773 SUPERFAMILY SSF55729 600 765 2.04E-41 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase SD28_RS01865 8955efcacb978ac6fbd88fa5b56b1028 773 Pfam PF04183 IucA / IucC family 135 383 8.6E-73 T 23-04-2016 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0015343|GO:0019290 SD28_RS03005 2b9ecc3b70b8870bae47c639d2a69f27 138 Gene3D G3DSA:3.90.1010.10 3 136 2.5E-48 T 23-04-2016 SD28_RS03005 2b9ecc3b70b8870bae47c639d2a69f27 138 SUPERFAMILY SSF82649 7 137 4.19E-41 T 23-04-2016 SD28_RS03005 2b9ecc3b70b8870bae47c639d2a69f27 138 PANTHER PTHR12735:SF26 9 130 5.3E-38 T 23-04-2016 SD28_RS03005 2b9ecc3b70b8870bae47c639d2a69f27 138 Pfam PF02657 Fe-S metabolism associated domain 13 131 3.1E-42 T 23-04-2016 IPR003808 Fe-S metabolism associated domain, SufE-like UniPathway: UPA00266 SD28_RS03005 2b9ecc3b70b8870bae47c639d2a69f27 138 PANTHER PTHR12735 9 130 5.3E-38 T 23-04-2016 SD28_RS01045 a387409b4fdd4845bc32d1b073c0e94c 698 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 393 694 4.0E-123 T 23-04-2016 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 SD28_RS01045 a387409b4fdd4845bc32d1b073c0e94c 698 PANTHER PTHR23406:SF3 161 698 7.4E-52 T 23-04-2016 SD28_RS01045 a387409b4fdd4845bc32d1b073c0e94c 698 Gene3D G3DSA:3.40.1390.20 208 350 1.4E-20 T 23-04-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like SD28_RS01045 a387409b4fdd4845bc32d1b073c0e94c 698 PANTHER PTHR23406 161 698 7.4E-52 T 23-04-2016 SD28_RS01045 a387409b4fdd4845bc32d1b073c0e94c 698 Pfam PF01515 Phosphate acetyl/butaryl transferase 378 694 6.5E-120 T 23-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 SD28_RS01045 a387409b4fdd4845bc32d1b073c0e94c 698 PIRSF PIRSF006107 41 698 4.8E-274 T 23-04-2016 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 SD28_RS01045 a387409b4fdd4845bc32d1b073c0e94c 698 SUPERFAMILY SSF75138 214 329 8.04E-16 T 23-04-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like SD28_RS01045 a387409b4fdd4845bc32d1b073c0e94c 698 SUPERFAMILY SSF53659 379 697 4.11E-91 T 23-04-2016 SD28_RS01045 a387409b4fdd4845bc32d1b073c0e94c 698 Pfam PF07085 DRTGG domain 218 328 1.8E-17 T 23-04-2016 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 SD28_RS01045 a387409b4fdd4845bc32d1b073c0e94c 698 Gene3D G3DSA:3.40.50.10750 511 670 1.4E-66 T 23-04-2016 SD28_RS03470 8034ef7c2a64384937c6971308fe4cac 275 PANTHER PTHR21057:SF2 1 275 4.4E-159 T 23-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 SD28_RS03470 8034ef7c2a64384937c6971308fe4cac 275 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 8 270 51.46 T 23-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 SD28_RS03470 8034ef7c2a64384937c6971308fe4cac 275 PANTHER PTHR21057 1 275 4.4E-159 T 23-04-2016 SD28_RS03470 8034ef7c2a64384937c6971308fe4cac 275 Pfam PF00793 DAHP synthetase I family 5 264 6.8E-73 T 23-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 SD28_RS03470 8034ef7c2a64384937c6971308fe4cac 275 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 13 268 8.8E-123 T 23-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 SD28_RS03470 8034ef7c2a64384937c6971308fe4cac 275 SUPERFAMILY SSF51569 2 271 1.56E-105 T 23-04-2016 SD28_RS03470 8034ef7c2a64384937c6971308fe4cac 275 Gene3D G3DSA:3.20.20.70 12 269 4.2E-112 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS00910 0d982378083a65c6d701d8ca7568b0c5 325 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 323 3.9E-151 T 23-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 SD28_RS00910 0d982378083a65c6d701d8ca7568b0c5 325 SUPERFAMILY SSF75620 3 322 3.53E-127 T 23-04-2016 SD28_RS00910 0d982378083a65c6d701d8ca7568b0c5 325 Gene3D G3DSA:1.20.58.410 2 76 2.4E-16 T 23-04-2016 SD28_RS00910 0d982378083a65c6d701d8ca7568b0c5 325 Pfam PF03462 PCRF domain 2 180 5.6E-53 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 SD28_RS00910 0d982378083a65c6d701d8ca7568b0c5 325 Gene3D G3DSA:3.30.160.20 188 266 1.3E-37 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain SD28_RS00910 0d982378083a65c6d701d8ca7568b0c5 325 Pfam PF00472 RF-1 domain 189 297 4.3E-40 T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 SD28_RS00910 0d982378083a65c6d701d8ca7568b0c5 325 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 205 221 - T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 SD28_RS00910 0d982378083a65c6d701d8ca7568b0c5 325 SMART SM00937 37 155 2.7E-51 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 SD28_RS00910 0d982378083a65c6d701d8ca7568b0c5 325 PANTHER PTHR11075:SF6 1 323 7.3E-151 T 23-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 SD28_RS00910 0d982378083a65c6d701d8ca7568b0c5 325 PANTHER PTHR11075 1 323 7.3E-151 T 23-04-2016 SD28_RS04590 3f33405f2f9e315abd3754944132c868 92 SUPERFAMILY SSF54534 3 89 1.7E-27 T 23-04-2016 SD28_RS04590 3f33405f2f9e315abd3754944132c868 92 PANTHER PTHR10657 5 91 7.8E-35 T 23-04-2016 SD28_RS04590 3f33405f2f9e315abd3754944132c868 92 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 30 50 - T 23-04-2016 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site SD28_RS04590 3f33405f2f9e315abd3754944132c868 92 Gene3D G3DSA:3.10.50.40 3 91 7.2E-31 T 23-04-2016 SD28_RS04590 3f33405f2f9e315abd3754944132c868 92 Pfam PF00639 PPIC-type PPIASE domain 12 89 7.1E-22 T 23-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 SD28_RS04565 02e1b7ac07894401be2eadd143e647ad 348 PANTHER PTHR11933 5 250 3.3E-104 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 SD28_RS04565 02e1b7ac07894401be2eadd143e647ad 348 Gene3D G3DSA:3.40.50.620 1 208 2.4E-29 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS04565 02e1b7ac07894401be2eadd143e647ad 348 SUPERFAMILY SSF52402 7 249 2.65E-33 T 23-04-2016 SD28_RS04565 02e1b7ac07894401be2eadd143e647ad 348 PANTHER PTHR11933:SF6 5 250 3.3E-104 T 23-04-2016 SD28_RS04565 02e1b7ac07894401be2eadd143e647ad 348 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 5 159 4.7E-12 T 23-04-2016 IPR020536 Thil, AANH domain GO:0004810 UniPathway: UPA00060 SD28_RS07075 e64fd0a76c84323872cbda90f1148cae 580 Pfam PF02272 DHHA1 domain 380 449 8.1E-10 T 23-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 SD28_RS07075 e64fd0a76c84323872cbda90f1148cae 580 PANTHER PTHR30255 1 579 1.6E-136 T 23-04-2016 SD28_RS07075 e64fd0a76c84323872cbda90f1148cae 580 PANTHER PTHR30255:SF2 1 579 1.6E-136 T 23-04-2016 SD28_RS07075 e64fd0a76c84323872cbda90f1148cae 580 SUPERFAMILY SSF64182 50 458 3.66E-85 T 23-04-2016 SD28_RS07075 e64fd0a76c84323872cbda90f1148cae 580 Pfam PF01368 DHH family 80 214 1.8E-7 T 23-04-2016 IPR001667 DDH domain SD28_RS07075 e64fd0a76c84323872cbda90f1148cae 580 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 23 577 2.7E-132 T 23-04-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 SD28_RS00755 945b1c5697cf3f9642f71392fe696d8f 142 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 2 115 18.107 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 SD28_RS00755 945b1c5697cf3f9642f71392fe696d8f 142 PANTHER PTHR33515 1 117 4.1E-32 T 23-04-2016 SD28_RS00755 945b1c5697cf3f9642f71392fe696d8f 142 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 8 95 2.0E-33 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 SD28_RS00755 945b1c5697cf3f9642f71392fe696d8f 142 SUPERFAMILY SSF89919 3 110 2.75E-28 T 23-04-2016 IPR023799 Ribosome-binding factor A domain SD28_RS00755 945b1c5697cf3f9642f71392fe696d8f 142 Pfam PF02033 Ribosome-binding factor A 6 106 2.8E-27 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 SD28_RS00755 945b1c5697cf3f9642f71392fe696d8f 142 ProSitePatterns PS01319 Ribosome-binding factor A signature. 74 95 - T 23-04-2016 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 SD28_RS00755 945b1c5697cf3f9642f71392fe696d8f 142 Gene3D G3DSA:3.30.300.20 4 114 4.5E-33 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta SD28_RS00755 945b1c5697cf3f9642f71392fe696d8f 142 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 108 3.1E-28 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 SD28_RS04490 761a69ebe1f5a219e1767506a7e4e71a 148 Gene3D G3DSA:1.10.1510.10 4 91 2.2E-30 T 23-04-2016 SD28_RS04490 761a69ebe1f5a219e1767506a7e4e71a 148 PANTHER PTHR28055:SF1 1 148 9.6E-51 T 23-04-2016 SD28_RS04490 761a69ebe1f5a219e1767506a7e4e71a 148 SUPERFAMILY SSF89095 4 147 7.32E-42 T 23-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 SD28_RS04490 761a69ebe1f5a219e1767506a7e4e71a 148 Gene3D G3DSA:1.10.10.410 92 147 2.7E-23 T 23-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal SD28_RS04490 761a69ebe1f5a219e1767506a7e4e71a 148 PANTHER PTHR28055 1 148 9.6E-51 T 23-04-2016 SD28_RS04490 761a69ebe1f5a219e1767506a7e4e71a 148 Pfam PF09424 Yqey-like protein 6 147 2.4E-53 T 23-04-2016 IPR019004 Uncharacterised domain YOR215C, mitochondrial SD28_RS03760 c08e268dde11fb6c51993fd268d5f8a8 439 PANTHER PTHR30560 1 430 7.9E-99 T 23-04-2016 SD28_RS03760 c08e268dde11fb6c51993fd268d5f8a8 439 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 157 236 1.1E-14 T 23-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 SD28_RS03760 c08e268dde11fb6c51993fd268d5f8a8 439 Pfam PF05697 Bacterial trigger factor protein (TF) 1 143 4.2E-36 T 23-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 SD28_RS03760 c08e268dde11fb6c51993fd268d5f8a8 439 Gene3D G3DSA:1.10.3120.10 214 384 1.6E-48 T 23-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 SD28_RS03760 c08e268dde11fb6c51993fd268d5f8a8 439 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 261 412 1.9E-28 T 23-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 SD28_RS03760 c08e268dde11fb6c51993fd268d5f8a8 439 PIRSF PIRSF003095 1 434 3.1E-106 T 23-04-2016 IPR005215 Trigger factor GO:0015031 SD28_RS03760 c08e268dde11fb6c51993fd268d5f8a8 439 SUPERFAMILY SSF102735 1 130 1.26E-32 T 23-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 SD28_RS03760 c08e268dde11fb6c51993fd268d5f8a8 439 PANTHER PTHR30560:SF3 1 430 7.9E-99 T 23-04-2016 SD28_RS03760 c08e268dde11fb6c51993fd268d5f8a8 439 SUPERFAMILY SSF54534 91 240 1.14E-33 T 23-04-2016 SD28_RS03760 c08e268dde11fb6c51993fd268d5f8a8 439 SUPERFAMILY SSF109998 247 429 8.76E-37 T 23-04-2016 IPR027304 Trigger factor/SurA domain SD28_RS03760 c08e268dde11fb6c51993fd268d5f8a8 439 Gene3D G3DSA:3.30.70.1050 1 116 1.0E-31 T 23-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 SD28_RS03760 c08e268dde11fb6c51993fd268d5f8a8 439 Gene3D G3DSA:3.10.50.40 141 213 3.2E-9 T 23-04-2016 SD28_RS03760 c08e268dde11fb6c51993fd268d5f8a8 439 TIGRFAM TIGR00115 tig: trigger factor 14 412 3.3E-126 T 23-04-2016 IPR005215 Trigger factor GO:0015031 SD28_RS03760 c08e268dde11fb6c51993fd268d5f8a8 439 Hamap MF_00303 Trigger factor [tig]. 1 418 20.301 T 23-04-2016 IPR005215 Trigger factor GO:0015031 SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 Gene3D G3DSA:3.30.56.50 2 47 6.3E-9 T 23-04-2016 SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 SUPERFAMILY SSF50447 521 603 1.99E-24 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 267 847 1.0E-257 T 23-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 351 507 1.4E-32 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 Gene3D G3DSA:2.40.30.10 521 612 6.2E-23 T 23-04-2016 SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 Gene3D G3DSA:3.40.50.300 344 507 4.7E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 PANTHER PTHR23115:SF184 332 677 2.0E-204 T 23-04-2016 SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 PANTHER PTHR23115:SF184 702 845 2.0E-204 T 23-04-2016 SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 847 17.167 T 23-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 SUPERFAMILY SSF52540 345 514 2.05E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 51 1.7E-7 T 23-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 274 323 2.2E-15 T 23-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 ProSitePatterns PS01176 Initiation factor 2 signature. 800 822 - T 23-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 PANTHER PTHR23115 332 677 2.0E-204 T 23-04-2016 SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 PANTHER PTHR23115 702 845 2.0E-204 T 23-04-2016 SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 SUPERFAMILY SSF46955 3 50 3.11E-7 T 23-04-2016 IPR009061 Putative DNA-binding domain SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 Pfam PF00009 Elongation factor Tu GTP binding domain 352 508 5.3E-35 T 23-04-2016 SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 Pfam PF11987 Translation-initiation factor 2 634 739 2.0E-36 T 23-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 Gene3D G3DSA:2.40.30.10 751 847 4.3E-36 T 23-04-2016 SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 SUPERFAMILY SSF52156 631 756 4.45E-37 T 23-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 SUPERFAMILY SSF50447 751 846 4.42E-31 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain SD28_RS00760 031015ee30e2bd979dade75b0ef74530 849 Gene3D G3DSA:3.40.50.10050 650 728 1.1E-23 T 23-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 SD28_RS00650 68e4abb30052bf284ab4f8001bf37dc5 172 SUPERFAMILY SSF52047 1 154 7.59E-20 T 23-04-2016 SD28_RS00650 68e4abb30052bf284ab4f8001bf37dc5 172 Pfam PF00560 Leucine Rich Repeat 136 160 0.13 T 23-04-2016 IPR001611 Leucine-rich repeat GO:0005515 SD28_RS00650 68e4abb30052bf284ab4f8001bf37dc5 172 PANTHER PTHR24006 1 154 1.8E-18 T 23-04-2016 SD28_RS00650 68e4abb30052bf284ab4f8001bf37dc5 172 Gene3D G3DSA:3.80.10.10 1 153 1.5E-25 T 23-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like SD28_RS00650 68e4abb30052bf284ab4f8001bf37dc5 172 SMART SM00367 134 159 5.6 T 23-04-2016 IPR006553 Leucine-rich repeat, cysteine-containing subtype SD28_RS00650 68e4abb30052bf284ab4f8001bf37dc5 172 SMART SM00367 23 48 1.1E-4 T 23-04-2016 IPR006553 Leucine-rich repeat, cysteine-containing subtype SD28_RS00650 68e4abb30052bf284ab4f8001bf37dc5 172 SMART SM00367 60 84 45.0 T 23-04-2016 IPR006553 Leucine-rich repeat, cysteine-containing subtype SD28_RS00650 68e4abb30052bf284ab4f8001bf37dc5 172 SMART SM00367 1 22 10.0 T 23-04-2016 IPR006553 Leucine-rich repeat, cysteine-containing subtype SD28_RS00650 68e4abb30052bf284ab4f8001bf37dc5 172 Pfam PF13516 Leucine Rich repeat 1 16 0.0061 T 23-04-2016 IPR001611 Leucine-rich repeat GO:0005515 SD28_RS00650 68e4abb30052bf284ab4f8001bf37dc5 172 Pfam PF13516 Leucine Rich repeat 25 46 0.0019 T 23-04-2016 IPR001611 Leucine-rich repeat GO:0005515 SD28_RS04105 69e0982134ec4fdba92f74b7f5f05362 260 SMART SM00382 30 222 1.4E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS04105 69e0982134ec4fdba92f74b7f5f05362 260 Gene3D G3DSA:3.40.50.300 4 243 1.9E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04105 69e0982134ec4fdba92f74b7f5f05362 260 PANTHER PTHR24220:SF483 7 251 6.2E-93 T 23-04-2016 SD28_RS04105 69e0982134ec4fdba92f74b7f5f05362 260 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS04105 69e0982134ec4fdba92f74b7f5f05362 260 SUPERFAMILY SSF52540 4 237 4.7E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04105 69e0982134ec4fdba92f74b7f5f05362 260 Pfam PF00005 ABC transporter 22 172 1.2E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS04105 69e0982134ec4fdba92f74b7f5f05362 260 PANTHER PTHR24220 7 251 6.2E-93 T 23-04-2016 SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 PANTHER PTHR10099:SF5 1 911 0.0 T 23-04-2016 SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 PANTHER PTHR10099:SF5 929 1310 0.0 T 23-04-2016 SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 SUPERFAMILY SSF52317 1051 1309 1.46E-90 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 SUPERFAMILY SSF55326 618 816 1.49E-63 T 23-04-2016 SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 PANTHER PTHR10099 1 911 0.0 T 23-04-2016 SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 PANTHER PTHR10099 929 1310 0.0 T 23-04-2016 SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 SUPERFAMILY SSF56042 431 614 1.44E-51 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 5 1309 0.0 T 23-04-2016 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 Gene3D G3DSA:3.30.1330.10 210 421 3.3E-39 T 23-04-2016 IPR016188 PurM-like, N-terminal domain SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 Gene3D G3DSA:3.30.1330.10 646 807 1.7E-14 T 23-04-2016 IPR016188 PurM-like, N-terminal domain SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1054 1309 2.8E-100 T 23-04-2016 SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 SMART SM01211 1054 1309 1.2E-141 T 23-04-2016 SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 SUPERFAMILY SSF82697 2 150 4.66E-38 T 23-04-2016 SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 2 1310 20.104 T 23-04-2016 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 SUPERFAMILY SSF55326 220 427 5.76E-61 T 23-04-2016 SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 SUPERFAMILY SSF56042 823 1048 2.39E-40 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 Pfam PF02769 AIR synthase related protein, C-terminal domain 431 588 9.5E-27 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 Pfam PF02769 AIR synthase related protein, C-terminal domain 857 980 5.0E-9 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 Gene3D G3DSA:3.40.50.880 1054 1279 9.0E-13 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 SUPERFAMILY SSF109736 154 219 2.35E-19 T 23-04-2016 SD28_RS01815 40cc183764ba1861aa09ecda4b44a65a 1310 Gene3D G3DSA:3.90.650.10 860 980 9.0E-4 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 Gene3D G3DSA:3.40.50.1260 4 174 1.3E-65 T 23-04-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 PRINTS PR00477 Phosphoglycerate kinase family signature 308 333 7.8E-83 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 PRINTS PR00477 Phosphoglycerate kinase family signature 364 381 7.8E-83 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 PRINTS PR00477 Phosphoglycerate kinase family signature 341 352 7.8E-83 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 7.8E-83 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 7.8E-83 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 7.8E-83 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 7.8E-83 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 7.8E-83 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 7.8E-83 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 Pfam PF00162 Phosphoglycerate kinase 6 378 4.6E-144 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 5 388 39.413 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 PIRSF PIRSF000724 1 394 2.7E-144 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 SUPERFAMILY SSF53748 3 388 3.18E-148 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 Gene3D G3DSA:3.40.50.1270 175 376 6.2E-85 T 23-04-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 23-04-2016 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS06075 944befd52b72212e16d3a453f696d07c 395 PANTHER PTHR11406 1 391 3.1E-195 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 SD28_RS07155 7a080c166e66a0b706a11b4d0377579a 322 SMART SM01004 3 322 8.5E-214 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS07155 7a080c166e66a0b706a11b4d0377579a 322 Gene3D G3DSA:3.20.20.70 2 322 6.7E-143 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS07155 7a080c166e66a0b706a11b4d0377579a 322 Pfam PF00490 Delta-aminolevulinic acid dehydratase 6 321 9.5E-141 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS07155 7a080c166e66a0b706a11b4d0377579a 322 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 121 135 2.5E-56 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS07155 7a080c166e66a0b706a11b4d0377579a 322 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 190 209 2.5E-56 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS07155 7a080c166e66a0b706a11b4d0377579a 322 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 241 257 2.5E-56 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS07155 7a080c166e66a0b706a11b4d0377579a 322 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 266 281 2.5E-56 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS07155 7a080c166e66a0b706a11b4d0377579a 322 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 296 315 2.5E-56 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS07155 7a080c166e66a0b706a11b4d0377579a 322 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 152 171 2.5E-56 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS07155 7a080c166e66a0b706a11b4d0377579a 322 PANTHER PTHR11458 1 322 6.1E-172 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS07155 7a080c166e66a0b706a11b4d0377579a 322 PIRSF PIRSF001415 1 322 3.4E-141 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS07155 7a080c166e66a0b706a11b4d0377579a 322 SUPERFAMILY SSF51569 2 322 7.03E-134 T 23-04-2016 SD28_RS07155 7a080c166e66a0b706a11b4d0377579a 322 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 241 253 - T 23-04-2016 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS02250 3d30dbef3402c25ccb0e4b02bb4be3db 249 Gene3D G3DSA:1.10.287.610 98 150 3.0E-22 T 23-04-2016 SD28_RS02250 3d30dbef3402c25ccb0e4b02bb4be3db 249 Gene3D G3DSA:3.40.50.10490 156 239 1.1E-67 T 23-04-2016 SD28_RS02250 3d30dbef3402c25ccb0e4b02bb4be3db 249 Gene3D G3DSA:3.40.50.10490 21 97 1.1E-67 T 23-04-2016 SD28_RS02250 3d30dbef3402c25ccb0e4b02bb4be3db 249 SUPERFAMILY SSF52313 4 229 1.83E-91 T 23-04-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain SD28_RS02250 3d30dbef3402c25ccb0e4b02bb4be3db 249 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 4 15 - T 23-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 SD28_RS02250 3d30dbef3402c25ccb0e4b02bb4be3db 249 PRINTS PR00395 Ribosomal protein S2 signature 35 44 6.5E-38 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02250 3d30dbef3402c25ccb0e4b02bb4be3db 249 PRINTS PR00395 Ribosomal protein S2 signature 194 208 6.5E-38 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02250 3d30dbef3402c25ccb0e4b02bb4be3db 249 PRINTS PR00395 Ribosomal protein S2 signature 156 173 6.5E-38 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02250 3d30dbef3402c25ccb0e4b02bb4be3db 249 PRINTS PR00395 Ribosomal protein S2 signature 173 184 6.5E-38 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02250 3d30dbef3402c25ccb0e4b02bb4be3db 249 PRINTS PR00395 Ribosomal protein S2 signature 4 22 6.5E-38 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02250 3d30dbef3402c25ccb0e4b02bb4be3db 249 PRINTS PR00395 Ribosomal protein S2 signature 85 102 6.5E-38 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02250 3d30dbef3402c25ccb0e4b02bb4be3db 249 Pfam PF00318 Ribosomal protein S2 7 221 6.9E-92 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02250 3d30dbef3402c25ccb0e4b02bb4be3db 249 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 4 223 1.5E-100 T 23-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 SD28_RS02250 3d30dbef3402c25ccb0e4b02bb4be3db 249 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 38.577 T 23-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 SD28_RS02250 3d30dbef3402c25ccb0e4b02bb4be3db 249 PANTHER PTHR12534 4 232 7.3E-110 T 23-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 PANTHER PTHR19370 5 237 2.3E-45 T 23-04-2016 SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 Pfam PF00175 Oxidoreductase NAD-binding domain 115 217 2.8E-18 T 23-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 PRINTS PR00410 Phenol hydroxylase reductase family signature 114 133 4.4E-10 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 PRINTS PR00410 Phenol hydroxylase reductase family signature 206 214 4.4E-10 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 PRINTS PR00410 Phenol hydroxylase reductase family signature 35 47 4.4E-10 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 PRINTS PR00410 Phenol hydroxylase reductase family signature 139 148 4.4E-10 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 PRINTS PR00410 Phenol hydroxylase reductase family signature 98 107 4.4E-10 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 Gene3D G3DSA:2.40.30.10 4 100 1.9E-18 T 23-04-2016 SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 Pfam PF00970 Oxidoreductase FAD-binding domain 8 103 5.2E-12 T 23-04-2016 IPR008333 Oxidoreductase, FAD-binding domain SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 55 62 2.6E-10 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 206 214 2.6E-10 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 114 133 2.6E-10 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 151 162 2.6E-10 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 SUPERFAMILY SSF52343 111 237 1.14E-30 T 23-04-2016 SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 Gene3D G3DSA:3.40.50.80 101 238 6.4E-36 T 23-04-2016 SD28_RS02495 93b41ca73d2a6994abd4da12f08228b9 242 SUPERFAMILY SSF63380 4 107 8.92E-23 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 SD28_RS02650 97eb4a30e54850fd75070b3934e52e56 115 PIRSF PIRSF002191 1 115 5.6E-45 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02650 97eb4a30e54850fd75070b3934e52e56 115 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 3 115 28.237 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02650 97eb4a30e54850fd75070b3934e52e56 115 ProSitePatterns PS01015 Ribosomal protein L19 signature. 87 102 - T 23-04-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02650 97eb4a30e54850fd75070b3934e52e56 115 PANTHER PTHR15680 7 115 6.5E-44 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02650 97eb4a30e54850fd75070b3934e52e56 115 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 5 114 1.2E-44 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02650 97eb4a30e54850fd75070b3934e52e56 115 PRINTS PR00061 Ribosomal protein L19 signature 35 64 1.1E-37 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02650 97eb4a30e54850fd75070b3934e52e56 115 PRINTS PR00061 Ribosomal protein L19 signature 5 34 1.1E-37 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02650 97eb4a30e54850fd75070b3934e52e56 115 PRINTS PR00061 Ribosomal protein L19 signature 89 114 1.1E-37 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02650 97eb4a30e54850fd75070b3934e52e56 115 SUPERFAMILY SSF50104 2 114 9.53E-43 T 23-04-2016 IPR008991 Translation protein SH3-like domain SD28_RS02650 97eb4a30e54850fd75070b3934e52e56 115 Pfam PF01245 Ribosomal protein L19 5 114 1.0E-45 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 Gene3D G3DSA:3.30.160.40 219 300 7.3E-21 T 23-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 SUPERFAMILY SSF54782 218 300 3.92E-19 T 23-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 5 292 3.6E-108 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 Gene3D G3DSA:3.40.190.10 2 108 1.7E-43 T 23-04-2016 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 229 245 - T 23-04-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 PRINTS PR00151 Porphobilinogen deaminase signature 43 63 7.5E-43 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 PRINTS PR00151 Porphobilinogen deaminase signature 228 245 7.5E-43 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 PRINTS PR00151 Porphobilinogen deaminase signature 74 93 7.5E-43 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 PRINTS PR00151 Porphobilinogen deaminase signature 141 158 7.5E-43 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 PRINTS PR00151 Porphobilinogen deaminase signature 122 139 7.5E-43 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 SUPERFAMILY SSF53850 4 216 2.97E-78 T 23-04-2016 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 5 210 9.5E-75 T 23-04-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 PANTHER PTHR11557 3 300 2.2E-136 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 PIRSF PIRSF001438 1 301 2.2E-113 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 Gene3D G3DSA:3.40.190.10 109 197 4.5E-40 T 23-04-2016 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 4 293 36.18 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS01390 153fef205372ad91fb7d5c9cca26868f 301 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 224 291 5.0E-18 T 23-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS06485 524832ad80592efd070547da49d2fe3a 389 PANTHER PTHR32468 12 387 2.6E-63 T 23-04-2016 SD28_RS06485 524832ad80592efd070547da49d2fe3a 389 PANTHER PTHR32468:SF9 12 387 2.6E-63 T 23-04-2016 SD28_RS06485 524832ad80592efd070547da49d2fe3a 389 Pfam PF00999 Sodium/hydrogen exchanger family 17 386 3.5E-49 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 SD28_RS03840 005c2843d6e945d0e6c68c191f80062c 238 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 27 234 1.4E-37 T 23-04-2016 IPR003744 Protein of unknown function DUF165 SD28_RS03840 005c2843d6e945d0e6c68c191f80062c 238 PANTHER PTHR34300:SF2 11 230 1.9E-41 T 23-04-2016 SD28_RS03840 005c2843d6e945d0e6c68c191f80062c 238 Pfam PF02592 Putative vitamin uptake transporter 61 229 2.0E-33 T 23-04-2016 IPR003744 Protein of unknown function DUF165 SD28_RS03840 005c2843d6e945d0e6c68c191f80062c 238 PANTHER PTHR34300 11 230 1.9E-41 T 23-04-2016 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 3.8E-63 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 3.8E-63 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 3.8E-63 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 3.8E-63 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 3.8E-63 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 3.8E-63 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 379 397 3.8E-63 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 SMART SM01096 429 551 6.4E-55 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1081 12.667 T 23-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 Gene3D G3DSA:3.40.50.1380 952 1090 1.9E-27 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 Gene3D G3DSA:1.10.1030.10 399 540 1.1E-42 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 Gene3D G3DSA:3.30.1490.20 141 199 2.5E-23 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 SUPERFAMILY SSF52335 952 1086 1.7E-25 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 SUPERFAMILY SSF48108 395 554 1.44E-42 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 SUPERFAMILY SSF56059 689 947 3.37E-98 T 23-04-2016 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 689 891 9.4E-34 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 129 334 4.1E-70 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 Gene3D G3DSA:3.30.470.20 765 949 2.1E-70 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 Gene3D G3DSA:3.30.470.20 200 398 1.2E-73 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 SMART SM00851 970 1060 6.7E-17 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 Pfam PF02142 MGS-like domain 971 1060 1.2E-14 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1071 0.0 T 23-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 Gene3D G3DSA:3.30.1490.20 703 764 1.8E-18 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 SUPERFAMILY SSF52440 569 691 6.91E-45 T 23-04-2016 IPR016185 Pre-ATP-grasp domain SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 SUPERFAMILY SSF56059 128 400 4.6E-106 T 23-04-2016 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 725 739 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 432 551 2.0E-37 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 SUPERFAMILY SSF52440 1 127 9.5E-49 T 23-04-2016 IPR016185 Pre-ATP-grasp domain SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 Gene3D G3DSA:3.40.50.20 4 108 5.5E-43 T 23-04-2016 IPR016185 Pre-ATP-grasp domain SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 854 861 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 Gene3D G3DSA:3.40.50.20 541 678 2.7E-55 T 23-04-2016 IPR016185 Pre-ATP-grasp domain SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 PANTHER PTHR11405:SF5 1 1093 0.0 T 23-04-2016 SD28_RS01360 3a09a6a72896e36e9d636d5460710994 1093 PANTHER PTHR11405 1 1093 0.0 T 23-04-2016 SD28_RS03490 0accd88be0099e9d869764694390553e 449 PANTHER PTHR11061 13 447 2.4E-102 T 23-04-2016 SD28_RS03490 0accd88be0099e9d869764694390553e 449 Gene3D G3DSA:3.40.50.150 259 446 8.7E-51 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS03490 0accd88be0099e9d869764694390553e 449 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 15 448 64.672 T 23-04-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 SD28_RS03490 0accd88be0099e9d869764694390553e 449 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 430 440 - T 23-04-2016 IPR030391 RNA methyltransferase TrmA, conserved site SD28_RS03490 0accd88be0099e9d869764694390553e 449 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 272 446 9.3E-26 T 23-04-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 SD28_RS03490 0accd88be0099e9d869764694390553e 449 PANTHER PTHR11061:SF30 13 447 2.4E-102 T 23-04-2016 SD28_RS03490 0accd88be0099e9d869764694390553e 449 SUPERFAMILY SSF50249 14 71 3.48E-11 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS03490 0accd88be0099e9d869764694390553e 449 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 378 408 - T 23-04-2016 IPR030390 RNA methyltransferase TrmA, active site SD28_RS03490 0accd88be0099e9d869764694390553e 449 Gene3D G3DSA:2.40.50.140 10 84 3.4E-24 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS03490 0accd88be0099e9d869764694390553e 449 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 21 440 7.1E-98 T 23-04-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 SD28_RS03490 0accd88be0099e9d869764694390553e 449 SUPERFAMILY SSF53335 72 447 5.39E-73 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS02235 24f2744d770108df1d7ced1ffb8b3ca0 458 ProSitePatterns PS00216 Sugar transport proteins signature 1. 63 79 - T 23-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 SD28_RS02235 24f2744d770108df1d7ced1ffb8b3ca0 458 PANTHER PTHR23504 12 420 1.3E-120 T 23-04-2016 SD28_RS02235 24f2744d770108df1d7ced1ffb8b3ca0 458 Gene3D G3DSA:1.20.1250.20 208 388 2.2E-19 T 23-04-2016 SD28_RS02235 24f2744d770108df1d7ced1ffb8b3ca0 458 Gene3D G3DSA:1.20.1250.20 9 186 1.6E-28 T 23-04-2016 SD28_RS02235 24f2744d770108df1d7ced1ffb8b3ca0 458 Pfam PF07690 Major Facilitator Superfamily 13 349 3.2E-40 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS02235 24f2744d770108df1d7ced1ffb8b3ca0 458 PANTHER PTHR23504:SF37 12 420 1.3E-120 T 23-04-2016 SD28_RS02235 24f2744d770108df1d7ced1ffb8b3ca0 458 SUPERFAMILY SSF103473 9 387 1.22E-55 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS00685 77ab62042922a7e878ae0e691a00cc86 144 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 6 134 2.6E-36 T 23-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 SD28_RS00685 77ab62042922a7e878ae0e691a00cc86 144 PANTHER PTHR13822 6 144 4.3E-31 T 23-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 SD28_RS00685 77ab62042922a7e878ae0e691a00cc86 144 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 4 132 20.032 T 23-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 SD28_RS00685 77ab62042922a7e878ae0e691a00cc86 144 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 11 90 3.0E-35 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 SD28_RS00685 77ab62042922a7e878ae0e691a00cc86 144 SUPERFAMILY SSF51344 5 86 7.85E-21 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 SD28_RS00685 77ab62042922a7e878ae0e691a00cc86 144 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 83 1.8E-23 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 SD28_RS00685 77ab62042922a7e878ae0e691a00cc86 144 Gene3D G3DSA:2.60.15.10 6 90 8.8E-26 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 SD28_RS00685 77ab62042922a7e878ae0e691a00cc86 144 SUPERFAMILY SSF46604 89 135 2.25E-5 T 23-04-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain SD28_RS05345 89e08af270fdf9ea6ab4e308a942637c 108 ProSitePatterns PS00194 Thioredoxin family active site. 26 44 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 SD28_RS05345 89e08af270fdf9ea6ab4e308a942637c 108 SUPERFAMILY SSF52833 4 107 1.14E-35 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS05345 89e08af270fdf9ea6ab4e308a942637c 108 Gene3D G3DSA:3.40.30.10 4 106 1.3E-34 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS05345 89e08af270fdf9ea6ab4e308a942637c 108 Pfam PF00085 Thioredoxin 6 105 1.1E-30 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 SD28_RS05345 89e08af270fdf9ea6ab4e308a942637c 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 11 106 3.0E-34 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 SD28_RS05345 89e08af270fdf9ea6ab4e308a942637c 108 PRINTS PR00421 Thioredoxin family signature 25 33 2.0E-9 T 23-04-2016 SD28_RS05345 89e08af270fdf9ea6ab4e308a942637c 108 PRINTS PR00421 Thioredoxin family signature 72 83 2.0E-9 T 23-04-2016 SD28_RS05345 89e08af270fdf9ea6ab4e308a942637c 108 PRINTS PR00421 Thioredoxin family signature 33 42 2.0E-9 T 23-04-2016 SD28_RS05345 89e08af270fdf9ea6ab4e308a942637c 108 PIRSF PIRSF000077 3 108 2.8E-35 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 SD28_RS05345 89e08af270fdf9ea6ab4e308a942637c 108 PANTHER PTHR10438 9 107 4.8E-37 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 23-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 Gene3D G3DSA:3.40.50.261 120 287 9.1E-75 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 6.9E-36 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 6.9E-36 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 6.9E-36 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 6.9E-36 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 SUPERFAMILY SSF52210 123 286 1.44E-55 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 SMART SM00881 4 100 8.9E-37 T 23-04-2016 IPR003781 CoA-binding GO:0048037 SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 SUPERFAMILY SSF51735 1 122 1.39E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 Gene3D G3DSA:3.40.50.720 2 119 1.7E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 PANTHER PTHR11117 1 287 1.5E-188 T 23-04-2016 SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 PIRSF PIRSF001553 1 289 5.0E-132 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 Pfam PF00549 CoA-ligase 151 270 6.4E-20 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 Pfam PF02629 CoA binding domain 6 99 1.1E-29 T 23-04-2016 IPR003781 CoA-binding GO:0048037 SD28_RS03400 c5b5a5c88f5c67ca5e7fb0028038fd26 290 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 287 5.0E-138 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 SD28_RS05495 98dee01a3e2c22785e1fcda36521fc26 357 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 3 354 37.405 T 23-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 SD28_RS05495 98dee01a3e2c22785e1fcda36521fc26 357 PANTHER PTHR21090 1 337 5.8E-138 T 23-04-2016 SD28_RS05495 98dee01a3e2c22785e1fcda36521fc26 357 SUPERFAMILY SSF56796 33 342 1.96E-89 T 23-04-2016 SD28_RS05495 98dee01a3e2c22785e1fcda36521fc26 357 PIRSF PIRSF001455 6 357 1.8E-101 T 23-04-2016 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 SD28_RS05495 98dee01a3e2c22785e1fcda36521fc26 357 Gene3D G3DSA:1.20.1090.10 174 349 7.6E-54 T 23-04-2016 SD28_RS05495 98dee01a3e2c22785e1fcda36521fc26 357 Pfam PF01761 3-dehydroquinate synthase 67 326 7.1E-99 T 23-04-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 SD28_RS05495 98dee01a3e2c22785e1fcda36521fc26 357 Gene3D G3DSA:3.40.50.1970 15 173 1.3E-55 T 23-04-2016 SD28_RS05495 98dee01a3e2c22785e1fcda36521fc26 357 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 27 350 8.2E-108 T 23-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 SD28_RS00230 e83dceb5a091cef1670fbba7ab7378aa 154 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 3 76 5.3E-9 T 23-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 SD28_RS00230 e83dceb5a091cef1670fbba7ab7378aa 154 SUPERFAMILY SSF54534 2 141 1.43E-29 T 23-04-2016 SD28_RS00230 e83dceb5a091cef1670fbba7ab7378aa 154 Gene3D G3DSA:3.10.50.40 2 70 9.7E-14 T 23-04-2016 SD28_RS00230 e83dceb5a091cef1670fbba7ab7378aa 154 Gene3D G3DSA:3.10.50.40 124 144 9.7E-14 T 23-04-2016 SD28_RS03580 ac0473aec697012de6de7a5dbbad2af7 431 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 4 422 1.3E-95 T 23-04-2016 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS03580 ac0473aec697012de6de7a5dbbad2af7 431 Gene3D G3DSA:1.10.940.10 1 142 1.4E-26 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 SD28_RS03580 ac0473aec697012de6de7a5dbbad2af7 431 PANTHER PTHR22807 17 427 2.0E-68 T 23-04-2016 SD28_RS03580 ac0473aec697012de6de7a5dbbad2af7 431 SUPERFAMILY SSF53335 143 422 1.27E-55 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS03580 ac0473aec697012de6de7a5dbbad2af7 431 Pfam PF01029 NusB family 1 121 3.4E-18 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 SD28_RS03580 ac0473aec697012de6de7a5dbbad2af7 431 Pfam PF01189 16S rRNA methyltransferase RsmB/F 232 419 2.8E-55 T 23-04-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS03580 ac0473aec697012de6de7a5dbbad2af7 431 Gene3D G3DSA:3.40.50.150 225 422 3.1E-48 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS03580 ac0473aec697012de6de7a5dbbad2af7 431 SUPERFAMILY SSF48013 1 142 3.27E-22 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 SD28_RS03580 ac0473aec697012de6de7a5dbbad2af7 431 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 405 422 2.7E-25 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS03580 ac0473aec697012de6de7a5dbbad2af7 431 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 213 227 2.7E-25 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS03580 ac0473aec697012de6de7a5dbbad2af7 431 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 357 373 2.7E-25 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS03580 ac0473aec697012de6de7a5dbbad2af7 431 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 306 318 2.7E-25 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS03580 ac0473aec697012de6de7a5dbbad2af7 431 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 242 252 2.7E-25 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS01175 6cc143da8018b132baf422f79b23f038 1091 SUPERFAMILY SSF48403 676 754 8.91E-5 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS01175 6cc143da8018b132baf422f79b23f038 1091 Pfam PF06744 Type VI secretion protein IcmF C-terminal 855 1050 6.2E-11 T 23-04-2016 IPR010623 Type VI secretion system IcmF, C-terminal SD28_RS06195 4f58941d33563e0785c0aafdcb923416 479 PANTHER PTHR11963 36 479 9.8E-168 T 23-04-2016 SD28_RS06195 4f58941d33563e0785c0aafdcb923416 479 SUPERFAMILY SSF53187 162 476 6.59E-115 T 23-04-2016 SD28_RS06195 4f58941d33563e0785c0aafdcb923416 479 PANTHER PTHR11963:SF13 36 479 9.8E-168 T 23-04-2016 SD28_RS06195 4f58941d33563e0785c0aafdcb923416 479 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 167 470 4.3E-112 T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 SD28_RS06195 4f58941d33563e0785c0aafdcb923416 479 PRINTS PR00481 Cytosol aminopeptidase signature 267 288 2.8E-48 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 SD28_RS06195 4f58941d33563e0785c0aafdcb923416 479 PRINTS PR00481 Cytosol aminopeptidase signature 245 262 2.8E-48 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 SD28_RS06195 4f58941d33563e0785c0aafdcb923416 479 PRINTS PR00481 Cytosol aminopeptidase signature 326 346 2.8E-48 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 SD28_RS06195 4f58941d33563e0785c0aafdcb923416 479 PRINTS PR00481 Cytosol aminopeptidase signature 354 369 2.8E-48 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 SD28_RS06195 4f58941d33563e0785c0aafdcb923416 479 PRINTS PR00481 Cytosol aminopeptidase signature 304 325 2.8E-48 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 SD28_RS06195 4f58941d33563e0785c0aafdcb923416 479 SUPERFAMILY SSF52949 4 166 1.59E-17 T 23-04-2016 SD28_RS06195 4f58941d33563e0785c0aafdcb923416 479 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 330 337 - T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 SD28_RS06195 4f58941d33563e0785c0aafdcb923416 479 Gene3D G3DSA:3.40.220.10 37 142 5.4E-9 T 23-04-2016 SD28_RS06195 4f58941d33563e0785c0aafdcb923416 479 Gene3D G3DSA:3.40.630.10 154 477 8.7E-127 T 23-04-2016 SD28_RS06195 4f58941d33563e0785c0aafdcb923416 479 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 1 479 32.581 T 23-04-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 SD28_RS06195 4f58941d33563e0785c0aafdcb923416 479 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 27 133 8.3E-10 T 23-04-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 SD28_RS05575 05d9f86472f07cba7fda3425de2cf164 583 Gene3D G3DSA:1.25.40.10 60 166 2.5E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS05575 05d9f86472f07cba7fda3425de2cf164 583 Gene3D G3DSA:1.25.40.10 448 573 2.0E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS05575 05d9f86472f07cba7fda3425de2cf164 583 SMART SM00671 89 124 5.3E-4 T 23-04-2016 IPR006597 Sel1-like repeat SD28_RS05575 05d9f86472f07cba7fda3425de2cf164 583 SMART SM00671 125 160 5.0E-7 T 23-04-2016 IPR006597 Sel1-like repeat SD28_RS05575 05d9f86472f07cba7fda3425de2cf164 583 SMART SM00671 497 528 0.15 T 23-04-2016 IPR006597 Sel1-like repeat SD28_RS05575 05d9f86472f07cba7fda3425de2cf164 583 SMART SM00671 529 566 8.8E-7 T 23-04-2016 IPR006597 Sel1-like repeat SD28_RS05575 05d9f86472f07cba7fda3425de2cf164 583 Pfam PF08238 Sel1 repeat 92 121 6.8E-6 T 23-04-2016 IPR006597 Sel1-like repeat SD28_RS05575 05d9f86472f07cba7fda3425de2cf164 583 Pfam PF08238 Sel1 repeat 499 528 2.6 T 23-04-2016 IPR006597 Sel1-like repeat SD28_RS05575 05d9f86472f07cba7fda3425de2cf164 583 Pfam PF08238 Sel1 repeat 126 160 3.5E-6 T 23-04-2016 IPR006597 Sel1-like repeat SD28_RS05575 05d9f86472f07cba7fda3425de2cf164 583 Pfam PF08238 Sel1 repeat 530 565 9.4E-9 T 23-04-2016 IPR006597 Sel1-like repeat SD28_RS05575 05d9f86472f07cba7fda3425de2cf164 583 SUPERFAMILY SSF81901 61 163 1.09E-19 T 23-04-2016 SD28_RS05575 05d9f86472f07cba7fda3425de2cf164 583 SUPERFAMILY SSF81901 450 572 4.71E-19 T 23-04-2016 SD28_RS05575 05d9f86472f07cba7fda3425de2cf164 583 PANTHER PTHR11102 65 181 3.6E-31 T 23-04-2016 SD28_RS05575 05d9f86472f07cba7fda3425de2cf164 583 PANTHER PTHR11102 492 573 3.6E-31 T 23-04-2016 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 SUPERFAMILY SSF57667 828 880 3.26E-15 T 23-04-2016 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 SUPERFAMILY SSF57667 697 751 2.11E-16 T 23-04-2016 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 SUPERFAMILY SSF57667 769 821 4.06E-7 T 23-04-2016 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 701 721 - T 23-04-2016 IPR007087 Zinc finger, C2H2 GO:0046872 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 641 663 - T 23-04-2016 IPR007087 Zinc finger, C2H2 GO:0046872 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 729 751 - T 23-04-2016 IPR007087 Zinc finger, C2H2 GO:0046872 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 671 693 - T 23-04-2016 IPR007087 Zinc finger, C2H2 GO:0046872 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 846 868 - T 23-04-2016 IPR007087 Zinc finger, C2H2 GO:0046872 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 905 926 - T 23-04-2016 IPR007087 Zinc finger, C2H2 GO:0046872 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 Pfam PF00096 Zinc finger, C2H2 type 844 868 1.4E-5 T 23-04-2016 IPR007087 Zinc finger, C2H2 GO:0046872 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 SMART SM00355 699 721 0.018 T 23-04-2016 IPR015880 Zinc finger, C2H2-like SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 SMART SM00355 785 809 0.0077 T 23-04-2016 IPR015880 Zinc finger, C2H2-like SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 SMART SM00355 844 868 2.6E-5 T 23-04-2016 IPR015880 Zinc finger, C2H2-like SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 SMART SM00355 814 838 0.0036 T 23-04-2016 IPR015880 Zinc finger, C2H2-like SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 SMART SM00355 727 751 2.2E-4 T 23-04-2016 IPR015880 Zinc finger, C2H2-like SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 SMART SM00355 873 897 0.0049 T 23-04-2016 IPR015880 Zinc finger, C2H2-like SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 SMART SM00355 903 926 0.017 T 23-04-2016 IPR015880 Zinc finger, C2H2-like SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 SMART SM00355 756 780 0.047 T 23-04-2016 IPR015880 Zinc finger, C2H2-like SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 SMART SM00355 669 693 1.6E-4 T 23-04-2016 IPR015880 Zinc finger, C2H2-like SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 SMART SM00355 639 663 6.1E-4 T 23-04-2016 IPR015880 Zinc finger, C2H2-like SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 Gene3D G3DSA:3.30.160.60 778 813 3.8E-6 T 23-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 Gene3D G3DSA:3.30.160.60 664 690 6.5E-19 T 23-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 Gene3D G3DSA:3.30.160.60 718 754 1.4E-19 T 23-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 Gene3D G3DSA:3.30.160.60 896 927 4.0E-13 T 23-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 Gene3D G3DSA:3.30.160.60 837 872 1.0E-18 T 23-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 Gene3D G3DSA:3.30.160.60 691 717 1.4E-19 T 23-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 SUPERFAMILY SSF57667 873 925 3.21E-12 T 23-04-2016 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 SUPERFAMILY SSF57667 649 708 1.32E-22 T 23-04-2016 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 Gene3D G3DSA:3.30.160.60 814 836 6.2E-8 T 23-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 Gene3D G3DSA:3.30.160.60 637 663 3.7E-12 T 23-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 Gene3D G3DSA:3.30.160.60 756 777 1.9E-6 T 23-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 Gene3D G3DSA:3.30.160.60 873 895 2.2E-10 T 23-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 SD28_RS04810 27d217256aca31cdf4780d6ea82049cd 928 PANTHER PTHR24409 638 922 1.8E-125 T 23-04-2016 SD28_RS02625 f935dbb530a8dd88fd65b3b05f85280a 373 PANTHER PTHR11351:SF35 1 354 2.4E-107 T 23-04-2016 SD28_RS02625 f935dbb530a8dd88fd65b3b05f85280a 373 PRINTS PR00075 Fatty acid desaturase family 1 signature 237 251 1.1E-39 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 SD28_RS02625 f935dbb530a8dd88fd65b3b05f85280a 373 PRINTS PR00075 Fatty acid desaturase family 1 signature 44 66 1.1E-39 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 SD28_RS02625 f935dbb530a8dd88fd65b3b05f85280a 373 PRINTS PR00075 Fatty acid desaturase family 1 signature 105 134 1.1E-39 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 SD28_RS02625 f935dbb530a8dd88fd65b3b05f85280a 373 PRINTS PR00075 Fatty acid desaturase family 1 signature 67 87 1.1E-39 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 SD28_RS02625 f935dbb530a8dd88fd65b3b05f85280a 373 PRINTS PR00075 Fatty acid desaturase family 1 signature 194 215 1.1E-39 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 SD28_RS02625 f935dbb530a8dd88fd65b3b05f85280a 373 PRINTS PR00075 Fatty acid desaturase family 1 signature 163 181 1.1E-39 T 23-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 SD28_RS02625 f935dbb530a8dd88fd65b3b05f85280a 373 PANTHER PTHR11351 1 354 2.4E-107 T 23-04-2016 SD28_RS02625 f935dbb530a8dd88fd65b3b05f85280a 373 Pfam PF00487 Fatty acid desaturase 53 249 1.4E-17 T 23-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 SD28_RS05825 a62675bebdf91cc3f4079d029f8f4570 289 Gene3D G3DSA:3.40.190.10 93 175 4.4E-13 T 23-04-2016 SD28_RS05825 a62675bebdf91cc3f4079d029f8f4570 289 PANTHER PTHR30346:SF15 1 285 1.6E-83 T 23-04-2016 SD28_RS05825 a62675bebdf91cc3f4079d029f8f4570 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.0E-5 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SD28_RS05825 a62675bebdf91cc3f4079d029f8f4570 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.0E-5 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SD28_RS05825 a62675bebdf91cc3f4079d029f8f4570 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.0E-5 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SD28_RS05825 a62675bebdf91cc3f4079d029f8f4570 289 Gene3D G3DSA:1.10.10.10 1 80 1.0E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS05825 a62675bebdf91cc3f4079d029f8f4570 289 SUPERFAMILY SSF46785 1 80 3.54E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS05825 a62675bebdf91cc3f4079d029f8f4570 289 PANTHER PTHR30346 1 285 1.6E-83 T 23-04-2016 SD28_RS05825 a62675bebdf91cc3f4079d029f8f4570 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 7.7E-16 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SD28_RS05825 a62675bebdf91cc3f4079d029f8f4570 289 Pfam PF03466 LysR substrate binding domain 93 284 7.9E-33 T 23-04-2016 IPR005119 LysR, substrate-binding SD28_RS05825 a62675bebdf91cc3f4079d029f8f4570 289 Gene3D G3DSA:3.40.190.10 176 263 2.1E-20 T 23-04-2016 SD28_RS05825 a62675bebdf91cc3f4079d029f8f4570 289 SUPERFAMILY SSF53850 92 286 6.19E-30 T 23-04-2016 SD28_RS01255 4ad82ef20ac1cda8e1fa02c01457bd2f 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 6.8E-18 T 23-04-2016 IPR000813 7Fe ferredoxin GO:0009055 SD28_RS01255 4ad82ef20ac1cda8e1fa02c01457bd2f 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 6.8E-18 T 23-04-2016 IPR000813 7Fe ferredoxin GO:0009055 SD28_RS01255 4ad82ef20ac1cda8e1fa02c01457bd2f 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 6.8E-18 T 23-04-2016 IPR000813 7Fe ferredoxin GO:0009055 SD28_RS01255 4ad82ef20ac1cda8e1fa02c01457bd2f 107 Gene3D G3DSA:3.30.70.20 3 103 1.9E-23 T 23-04-2016 SD28_RS01255 4ad82ef20ac1cda8e1fa02c01457bd2f 107 Pfam PF11953 Domain of unknown function (DUF3470) 66 107 5.5E-16 T 23-04-2016 IPR022569 Ferredoxin, C-terminal SD28_RS01255 4ad82ef20ac1cda8e1fa02c01457bd2f 107 SUPERFAMILY SSF54862 2 90 8.6E-24 T 23-04-2016 SD28_RS01255 4ad82ef20ac1cda8e1fa02c01457bd2f 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SD28_RS01255 4ad82ef20ac1cda8e1fa02c01457bd2f 107 PANTHER PTHR11938 1 84 1.7E-40 T 23-04-2016 SD28_RS01255 4ad82ef20ac1cda8e1fa02c01457bd2f 107 Pfam PF00037 4Fe-4S binding domain 34 56 1.1E-6 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SD28_RS01255 4ad82ef20ac1cda8e1fa02c01457bd2f 107 PANTHER PTHR11938:SF101 1 84 1.7E-40 T 23-04-2016 SD28_RS03990 e297e6b9598b231335db9f97d6ba732d 188 Gene3D G3DSA:3.40.30.10 1 86 5.5E-9 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS03990 e297e6b9598b231335db9f97d6ba732d 188 SUPERFAMILY SSF52833 2 86 1.12E-7 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS06275 6cd39f91ac954a9bbe407f1e9bae1d63 296 SUPERFAMILY SSF161111 6 214 2.22E-35 T 23-04-2016 SD28_RS06275 6cd39f91ac954a9bbe407f1e9bae1d63 296 Gene3D G3DSA:1.20.1510.10 9 213 6.6E-28 T 23-04-2016 IPR027469 Cation efflux protein transmembrane domain SD28_RS06275 6cd39f91ac954a9bbe407f1e9bae1d63 296 PANTHER PTHR11562:SF55 9 262 9.7E-23 T 23-04-2016 SD28_RS06275 6cd39f91ac954a9bbe407f1e9bae1d63 296 PANTHER PTHR11562 9 262 9.7E-23 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 SD28_RS06275 6cd39f91ac954a9bbe407f1e9bae1d63 296 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 9 283 1.3E-31 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 SD28_RS06275 6cd39f91ac954a9bbe407f1e9bae1d63 296 Pfam PF01545 Cation efflux family 13 213 3.2E-30 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 SD28_RS02340 0a70c49ac396a3f63b12cd85953f81b9 223 SUPERFAMILY SSF54814 2 106 6.02E-39 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 SD28_RS02340 0a70c49ac396a3f63b12cd85953f81b9 223 PANTHER PTHR11760 2 216 1.4E-138 T 23-04-2016 SD28_RS02340 0a70c49ac396a3f63b12cd85953f81b9 223 Pfam PF07650 KH domain 38 111 8.0E-21 T 23-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 SD28_RS02340 0a70c49ac396a3f63b12cd85953f81b9 223 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 23-04-2016 IPR018280 Ribosomal protein S3, conserved site SD28_RS02340 0a70c49ac396a3f63b12cd85953f81b9 223 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 7.2E-97 T 23-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 SD28_RS02340 0a70c49ac396a3f63b12cd85953f81b9 223 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.485 T 23-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 SD28_RS02340 0a70c49ac396a3f63b12cd85953f81b9 223 PANTHER PTHR11760:SF19 2 216 1.4E-138 T 23-04-2016 SD28_RS02340 0a70c49ac396a3f63b12cd85953f81b9 223 Gene3D G3DSA:3.30.300.20 17 107 1.3E-35 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta SD28_RS02340 0a70c49ac396a3f63b12cd85953f81b9 223 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 1.7E-40 T 23-04-2016 SD28_RS02340 0a70c49ac396a3f63b12cd85953f81b9 223 SUPERFAMILY SSF54821 108 206 6.15E-41 T 23-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 SD28_RS02340 0a70c49ac396a3f63b12cd85953f81b9 223 SMART SM00322 60 125 1.5E-9 T 23-04-2016 IPR004087 K Homology domain GO:0003676 SD28_RS02340 0a70c49ac396a3f63b12cd85953f81b9 223 Gene3D G3DSA:3.30.1140.32 108 207 9.4E-48 T 23-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 SD28_RS04670 9434e558d4c56ac829826f780c66b75c 430 PANTHER PTHR11986:SF8 7 430 4.3E-146 T 23-04-2016 SD28_RS04670 9434e558d4c56ac829826f780c66b75c 430 Pfam PF00202 Aminotransferase class-III 20 424 3.7E-99 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SD28_RS04670 9434e558d4c56ac829826f780c66b75c 430 PANTHER PTHR11986 7 430 4.3E-146 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SD28_RS04670 9434e558d4c56ac829826f780c66b75c 430 Gene3D G3DSA:3.90.1150.10 5 57 5.1E-38 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS04670 9434e558d4c56ac829826f780c66b75c 430 Gene3D G3DSA:3.90.1150.10 332 424 5.1E-38 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS04670 9434e558d4c56ac829826f780c66b75c 430 SUPERFAMILY SSF53383 6 423 1.24E-103 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS04670 9434e558d4c56ac829826f780c66b75c 430 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 7 424 3.5E-139 T 23-04-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62|UniPathway: UPA00078 SD28_RS04670 9434e558d4c56ac829826f780c66b75c 430 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 241 278 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SD28_RS04670 9434e558d4c56ac829826f780c66b75c 430 Gene3D G3DSA:3.40.640.10 58 330 3.8E-73 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS04670 9434e558d4c56ac829826f780c66b75c 430 PIRSF PIRSF000521 18 428 1.7E-29 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SD28_RS02620 1e1564154c9510e6c807ca550cc4ec93 336 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 267 276 2.7E-47 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 SD28_RS02620 1e1564154c9510e6c807ca550cc4ec93 336 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 133 145 2.7E-47 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 SD28_RS02620 1e1564154c9510e6c807ca550cc4ec93 336 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 98 117 2.7E-47 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 SD28_RS02620 1e1564154c9510e6c807ca550cc4ec93 336 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 77 97 2.7E-47 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 SD28_RS02620 1e1564154c9510e6c807ca550cc4ec93 336 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 156 177 2.7E-47 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 SD28_RS02620 1e1564154c9510e6c807ca550cc4ec93 336 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 2.7E-47 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 SD28_RS02620 1e1564154c9510e6c807ca550cc4ec93 336 SUPERFAMILY SSF53067 102 312 5.5E-40 T 23-04-2016 SD28_RS02620 1e1564154c9510e6c807ca550cc4ec93 336 SUPERFAMILY SSF53067 3 124 9.71E-26 T 23-04-2016 SD28_RS02620 1e1564154c9510e6c807ca550cc4ec93 336 Gene3D G3DSA:3.30.420.40 1 161 2.0E-40 T 23-04-2016 SD28_RS02620 1e1564154c9510e6c807ca550cc4ec93 336 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 317 3.2E-128 T 23-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 SD28_RS02620 1e1564154c9510e6c807ca550cc4ec93 336 Pfam PF00814 Glycoprotease family 24 310 9.8E-97 T 23-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 SD28_RS02620 1e1564154c9510e6c807ca550cc4ec93 336 PANTHER PTHR11735:SF6 1 333 3.4E-144 T 23-04-2016 SD28_RS02620 1e1564154c9510e6c807ca550cc4ec93 336 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 310 2.5E-113 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 SD28_RS02620 1e1564154c9510e6c807ca550cc4ec93 336 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 336 63.602 T 23-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 SD28_RS02620 1e1564154c9510e6c807ca550cc4ec93 336 PANTHER PTHR11735 1 333 3.4E-144 T 23-04-2016 SD28_RS06745 79eeff81b2d789ca8623ab7fe5e19418 175 Gene3D G3DSA:3.40.630.30 3 174 7.8E-38 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase SD28_RS06745 79eeff81b2d789ca8623ab7fe5e19418 175 PANTHER PTHR13256 4 174 9.5E-37 T 23-04-2016 SD28_RS06745 79eeff81b2d789ca8623ab7fe5e19418 175 SUPERFAMILY SSF55729 3 172 4.29E-36 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase SD28_RS06745 79eeff81b2d789ca8623ab7fe5e19418 175 Pfam PF13302 Acetyltransferase (GNAT) domain 9 147 3.1E-24 T 23-04-2016 IPR000182 GNAT domain GO:0008080 SD28_RS00875 7fd4df6609c27ab4309e74dd1c7d120e 126 PANTHER PTHR10978:SF4 6 124 3.8E-26 T 23-04-2016 SD28_RS00875 7fd4df6609c27ab4309e74dd1c7d120e 126 SUPERFAMILY SSF81343 13 125 4.74E-24 T 23-04-2016 SD28_RS00875 7fd4df6609c27ab4309e74dd1c7d120e 126 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 13 118 3.8E-21 T 23-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 SD28_RS00875 7fd4df6609c27ab4309e74dd1c7d120e 126 PIRSF PIRSF000178 10 125 5.2E-21 T 23-04-2016 SD28_RS00875 7fd4df6609c27ab4309e74dd1c7d120e 126 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 81 94 - T 23-04-2016 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 UniPathway: UPA00223 SD28_RS00875 7fd4df6609c27ab4309e74dd1c7d120e 126 Gene3D G3DSA:1.20.1300.10 12 125 7.6E-28 T 23-04-2016 SD28_RS00875 7fd4df6609c27ab4309e74dd1c7d120e 126 PANTHER PTHR10978 6 124 3.8E-26 T 23-04-2016 SD28_RS00875 7fd4df6609c27ab4309e74dd1c7d120e 126 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 11 121 6.8E-29 T 23-04-2016 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 UniPathway: UPA00223 SD28_RS01140 1a632c93dd37e34239da5a4e07069396 448 SUPERFAMILY SSF51556 56 374 5.88E-91 T 23-04-2016 IPR032466 Metal-dependent hydrolase SD28_RS01140 1a632c93dd37e34239da5a4e07069396 448 ProSitePatterns PS00483 Dihydroorotase signature 2. 309 320 - T 23-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 SD28_RS01140 1a632c93dd37e34239da5a4e07069396 448 Gene3D G3DSA:3.20.20.140 70 413 2.5E-97 T 23-04-2016 SD28_RS01140 1a632c93dd37e34239da5a4e07069396 448 PANTHER PTHR11647:SF1 1 443 1.2E-138 T 23-04-2016 SD28_RS01140 1a632c93dd37e34239da5a4e07069396 448 SUPERFAMILY SSF51338 373 437 5.29E-33 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 SD28_RS01140 1a632c93dd37e34239da5a4e07069396 448 SUPERFAMILY SSF51338 5 55 5.29E-33 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 SD28_RS01140 1a632c93dd37e34239da5a4e07069396 448 Pfam PF01979 Amidohydrolase family 52 424 7.6E-19 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 SD28_RS01140 1a632c93dd37e34239da5a4e07069396 448 PANTHER PTHR11647 1 443 1.2E-138 T 23-04-2016 SD28_RS01140 1a632c93dd37e34239da5a4e07069396 448 Gene3D G3DSA:2.30.40.10 6 69 9.3E-25 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 SD28_RS01140 1a632c93dd37e34239da5a4e07069396 448 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 17 429 1.2E-86 T 23-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 SD28_RS05300 33bb6ff1f845a63bf54d8e2d195c2bdd 188 Gene3D G3DSA:2.70.40.10 3 187 1.9E-65 T 23-04-2016 IPR029054 dUTPase-like SD28_RS05300 33bb6ff1f845a63bf54d8e2d195c2bdd 188 Pfam PF00692 dUTPase 82 166 1.4E-5 T 23-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 SD28_RS05300 33bb6ff1f845a63bf54d8e2d195c2bdd 188 PANTHER PTHR11241 1 187 2.6E-72 T 23-04-2016 SD28_RS05300 33bb6ff1f845a63bf54d8e2d195c2bdd 188 SUPERFAMILY SSF51283 3 187 2.36E-50 T 23-04-2016 IPR029054 dUTPase-like SD28_RS05300 33bb6ff1f845a63bf54d8e2d195c2bdd 188 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 4 187 1.4E-49 T 23-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 SD28_RS05300 33bb6ff1f845a63bf54d8e2d195c2bdd 188 PANTHER PTHR11241:SF1 1 187 2.6E-72 T 23-04-2016 SD28_RS05300 33bb6ff1f845a63bf54d8e2d195c2bdd 188 Hamap MF_00146 Deoxycytidine triphosphate deaminase [dcd]. 1 188 28.045 T 23-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 SD28_RS04835 52ec55b1544ce8309743b0fa6a4cc39b 201 PANTHER PTHR10993 8 201 5.2E-56 T 23-04-2016 SD28_RS04835 52ec55b1544ce8309743b0fa6a4cc39b 201 PIRSF PIRSF016262 1 201 1.5E-52 T 23-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 SD28_RS04835 52ec55b1544ce8309743b0fa6a4cc39b 201 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 68 83 - T 23-04-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 SD28_RS04835 52ec55b1544ce8309743b0fa6a4cc39b 201 Pfam PF03099 Biotin/lipoate A/B protein ligase family 59 157 2.4E-9 T 23-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 SD28_RS04835 52ec55b1544ce8309743b0fa6a4cc39b 201 Hamap MF_00013 Octanoyltransferase [lipB]. 2 201 31.558 T 23-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 SD28_RS04835 52ec55b1544ce8309743b0fa6a4cc39b 201 SUPERFAMILY SSF55681 3 200 4.19E-55 T 23-04-2016 SD28_RS04835 52ec55b1544ce8309743b0fa6a4cc39b 201 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 72 113 2.0E-13 T 23-04-2016 SD28_RS04835 52ec55b1544ce8309743b0fa6a4cc39b 201 Gene3D G3DSA:3.90.1550.10 3 200 4.9E-59 T 23-04-2016 SD28_RS04835 52ec55b1544ce8309743b0fa6a4cc39b 201 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 24 201 1.7E-58 T 23-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 SUPERFAMILY SSF53383 130 562 1.25E-103 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 Gene3D G3DSA:3.90.100.10 588 709 9.0E-31 T 23-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 130 545 5.6E-167 T 23-04-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 PANTHER PTHR11751 510 630 3.4E-172 T 23-04-2016 SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 PANTHER PTHR11751 131 460 3.4E-172 T 23-04-2016 SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 PANTHER PTHR11751 483 491 3.4E-172 T 23-04-2016 SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 363 377 - T 23-04-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 570 699 6.1E-40 T 23-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 PANTHER PTHR11751:SF406 510 630 3.4E-172 T 23-04-2016 SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 PANTHER PTHR11751:SF406 131 460 3.4E-172 T 23-04-2016 SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 PANTHER PTHR11751:SF406 483 491 3.4E-172 T 23-04-2016 SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 SUPERFAMILY SSF55904 568 707 9.29E-36 T 23-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 16 123 3.2E-14 T 23-04-2016 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 Gene3D G3DSA:3.40.640.10 130 422 2.9E-99 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 Gene3D G3DSA:3.90.1150.10 427 587 1.1E-54 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS06380 1cb9d76b6c5c8791797182f918c8fc31 711 PIRSF PIRSF009393 1 711 4.3E-264 T 23-04-2016 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 SD28_RS07400 d94169f5430d654f53b1d20d5af98283 466 PANTHER PTHR11785:SF216 5 461 6.9E-65 T 23-04-2016 SD28_RS07400 d94169f5430d654f53b1d20d5af98283 466 PANTHER PTHR11785 5 461 6.9E-65 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS07400 d94169f5430d654f53b1d20d5af98283 466 Pfam PF13520 Amino acid permease 7 446 4.4E-51 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS07400 d94169f5430d654f53b1d20d5af98283 466 PIRSF PIRSF006060 1 466 2.7E-48 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS03705 a4f2a75076d3ee557e7db78f01a030d9 118 Pfam PF02699 Preprotein translocase subunit 34 108 1.0E-30 T 23-04-2016 IPR003849 Preprotein translocase YajC SD28_RS03705 a4f2a75076d3ee557e7db78f01a030d9 118 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 32 111 7.4E-32 T 23-04-2016 IPR003849 Preprotein translocase YajC SD28_RS03705 a4f2a75076d3ee557e7db78f01a030d9 118 PANTHER PTHR33909 9 117 4.6E-35 T 23-04-2016 SD28_RS03705 a4f2a75076d3ee557e7db78f01a030d9 118 PRINTS PR01853 Bacterial YajC preprotein translocase signature 69 87 1.6E-15 T 23-04-2016 IPR003849 Preprotein translocase YajC SD28_RS03705 a4f2a75076d3ee557e7db78f01a030d9 118 PRINTS PR01853 Bacterial YajC preprotein translocase signature 31 51 1.6E-15 T 23-04-2016 IPR003849 Preprotein translocase YajC SD28_RS03705 a4f2a75076d3ee557e7db78f01a030d9 118 PANTHER PTHR33909:SF1 9 117 4.6E-35 T 23-04-2016 SD28_RS03705 a4f2a75076d3ee557e7db78f01a030d9 118 SMART SM01323 29 111 3.2E-46 T 23-04-2016 IPR003849 Preprotein translocase YajC SD28_RS06170 762d81ad62b640ee1e84369e30396ca3 161 Gene3D G3DSA:1.10.287.180 5 77 6.3E-33 T 23-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 SD28_RS06170 762d81ad62b640ee1e84369e30396ca3 161 SUPERFAMILY SSF54534 84 160 1.83E-24 T 23-04-2016 SD28_RS06170 762d81ad62b640ee1e84369e30396ca3 161 PIRSF PIRSF006092 1 161 2.3E-51 T 23-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 SD28_RS06170 762d81ad62b640ee1e84369e30396ca3 161 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 19 50 - T 23-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 SD28_RS06170 762d81ad62b640ee1e84369e30396ca3 161 PANTHER PTHR30437 6 160 1.4E-61 T 23-04-2016 SD28_RS06170 762d81ad62b640ee1e84369e30396ca3 161 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 86 160 4.3E-28 T 23-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 SD28_RS06170 762d81ad62b640ee1e84369e30396ca3 161 Hamap MF_00105 Transcription elongation factor GreA [greA]. 4 159 32.129 T 23-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 SD28_RS06170 762d81ad62b640ee1e84369e30396ca3 161 SUPERFAMILY SSF46557 5 80 8.5E-28 T 23-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 SD28_RS06170 762d81ad62b640ee1e84369e30396ca3 161 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 7 158 1.4E-55 T 23-04-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 SD28_RS06170 762d81ad62b640ee1e84369e30396ca3 161 Gene3D G3DSA:3.10.50.30 83 161 4.6E-30 T 23-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 SD28_RS06170 762d81ad62b640ee1e84369e30396ca3 161 Pfam PF03449 Transcription elongation factor, N-terminal 6 76 4.3E-31 T 23-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 SD28_RS03025 83ee3ce192887e73467ed8167294be3f 252 Pfam PF00753 Metallo-beta-lactamase superfamily 16 170 1.4E-16 T 23-04-2016 IPR001279 Metallo-beta-lactamase SD28_RS03025 83ee3ce192887e73467ed8167294be3f 252 Gene3D G3DSA:3.60.15.10 7 252 2.0E-64 T 23-04-2016 IPR001279 Metallo-beta-lactamase SD28_RS03025 83ee3ce192887e73467ed8167294be3f 252 SMART SM00849 13 170 3.3E-31 T 23-04-2016 IPR001279 Metallo-beta-lactamase SD28_RS03025 83ee3ce192887e73467ed8167294be3f 252 PANTHER PTHR11935 2 252 9.9E-56 T 23-04-2016 SD28_RS03025 83ee3ce192887e73467ed8167294be3f 252 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 3 252 31.674 T 23-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 SD28_RS03025 83ee3ce192887e73467ed8167294be3f 252 SUPERFAMILY SSF56281 6 252 2.36E-54 T 23-04-2016 IPR001279 Metallo-beta-lactamase SD28_RS03025 83ee3ce192887e73467ed8167294be3f 252 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 171 252 6.7E-14 T 23-04-2016 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 SD28_RS00930 bf56f6bcc4761bb0cb5cde96a41a1d6d 98 Pfam PF01292 Prokaryotic cytochrome b561 19 96 1.5E-6 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 SD28_RS00930 bf56f6bcc4761bb0cb5cde96a41a1d6d 98 SUPERFAMILY SSF81342 18 96 1.18E-10 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 SD28_RS07740 c6ee762299c225ed027bb9a88d41b9e8 204 Gene3D G3DSA:1.10.10.10 16 94 4.3E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS07740 c6ee762299c225ed027bb9a88d41b9e8 204 SUPERFAMILY SSF46785 18 94 4.08E-7 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 SUPERFAMILY SSF52540 67 289 2.77E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 Gene3D G3DSA:3.30.230.10 285 454 2.4E-31 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 PANTHER PTHR32472 1 454 1.6E-185 T 23-04-2016 SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 Gene3D G3DSA:3.40.50.300 67 275 1.2E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 PRINTS PR01874 DNA repair protein radA signature 246 272 3.6E-88 T 23-04-2016 SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 PRINTS PR01874 DNA repair protein radA signature 211 239 3.6E-88 T 23-04-2016 SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 PRINTS PR01874 DNA repair protein radA signature 172 196 3.6E-88 T 23-04-2016 SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 PRINTS PR01874 DNA repair protein radA signature 81 109 3.6E-88 T 23-04-2016 SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 PRINTS PR01874 DNA repair protein radA signature 321 344 3.6E-88 T 23-04-2016 SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 PRINTS PR01874 DNA repair protein radA signature 10 34 3.6E-88 T 23-04-2016 SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 PRINTS PR01874 DNA repair protein radA signature 122 139 3.6E-88 T 23-04-2016 SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 Pfam PF13541 Subunit ChlI of Mg-chelatase 345 429 3.5E-9 T 23-04-2016 SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 448 2.5E-176 T 23-04-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 SUPERFAMILY SSF54211 301 456 3.79E-37 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 SUPERFAMILY SSF54211 253 267 3.79E-37 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 SMART SM00382 89 242 8.3E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS00090 b543c21eff5a1d6e74a3f3c710268ac5 457 Pfam PF13481 AAA domain 74 220 4.3E-13 T 23-04-2016 SD28_RS06465 b6d8d7c02da59ed6a8d124d8d7bd331c 127 PANTHER PTHR11715 1 127 7.1E-54 T 23-04-2016 IPR002930 Glycine cleavage system H-protein SD28_RS06465 b6d8d7c02da59ed6a8d124d8d7bd331c 127 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 126 25.45 T 23-04-2016 IPR002930 Glycine cleavage system H-protein SD28_RS06465 b6d8d7c02da59ed6a8d124d8d7bd331c 127 Pfam PF01597 Glycine cleavage H-protein 9 126 5.8E-40 T 23-04-2016 IPR002930 Glycine cleavage system H-protein SD28_RS06465 b6d8d7c02da59ed6a8d124d8d7bd331c 127 Gene3D G3DSA:2.40.50.100 7 127 1.1E-46 T 23-04-2016 SD28_RS06465 b6d8d7c02da59ed6a8d124d8d7bd331c 127 SUPERFAMILY SSF51230 4 126 7.37E-42 T 23-04-2016 IPR011053 Single hybrid motif SD28_RS06465 b6d8d7c02da59ed6a8d124d8d7bd331c 127 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 6 125 2.9E-37 T 23-04-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 SD28_RS07370 e6c4b7ca8b977e202f767f2786b91e5b 401 Pfam PF03222 Tryptophan/tyrosine permease family 9 388 1.7E-78 T 23-04-2016 IPR018227 Tryptophan/tyrosine permease GO:0003333 SD28_RS07370 e6c4b7ca8b977e202f767f2786b91e5b 401 PANTHER PTHR32195 8 398 9.1E-87 T 23-04-2016 SD28_RS07370 e6c4b7ca8b977e202f767f2786b91e5b 401 PRINTS PR00166 Aromatic amino acid permease signature 339 358 2.1E-58 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS07370 e6c4b7ca8b977e202f767f2786b91e5b 401 PRINTS PR00166 Aromatic amino acid permease signature 151 171 2.1E-58 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS07370 e6c4b7ca8b977e202f767f2786b91e5b 401 PRINTS PR00166 Aromatic amino acid permease signature 318 336 2.1E-58 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS07370 e6c4b7ca8b977e202f767f2786b91e5b 401 PRINTS PR00166 Aromatic amino acid permease signature 41 60 2.1E-58 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS07370 e6c4b7ca8b977e202f767f2786b91e5b 401 PRINTS PR00166 Aromatic amino acid permease signature 223 242 2.1E-58 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS07370 e6c4b7ca8b977e202f767f2786b91e5b 401 PRINTS PR00166 Aromatic amino acid permease signature 185 207 2.1E-58 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS07370 e6c4b7ca8b977e202f767f2786b91e5b 401 PRINTS PR00166 Aromatic amino acid permease signature 14 37 2.1E-58 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS07370 e6c4b7ca8b977e202f767f2786b91e5b 401 PRINTS PR00166 Aromatic amino acid permease signature 86 106 2.1E-58 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS07370 e6c4b7ca8b977e202f767f2786b91e5b 401 PRINTS PR00166 Aromatic amino acid permease signature 283 302 2.1E-58 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS07370 e6c4b7ca8b977e202f767f2786b91e5b 401 PANTHER PTHR32195:SF17 8 398 9.1E-87 T 23-04-2016 SD28_RS03255 488a1505a0868596d0114999439ff683 234 Pfam PF00106 short chain dehydrogenase 3 180 7.0E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS03255 488a1505a0868596d0114999439ff683 234 Gene3D G3DSA:3.40.50.720 2 231 2.8E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS03255 488a1505a0868596d0114999439ff683 234 SUPERFAMILY SSF51735 2 231 2.44E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS03255 488a1505a0868596d0114999439ff683 234 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 127 155 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 SD28_RS03255 488a1505a0868596d0114999439ff683 234 PANTHER PTHR24322 7 124 1.4E-17 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS03255 488a1505a0868596d0114999439ff683 234 PANTHER PTHR24322 140 172 1.4E-17 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS03255 488a1505a0868596d0114999439ff683 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.8E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS03255 488a1505a0868596d0114999439ff683 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 159 2.8E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS03255 488a1505a0868596d0114999439ff683 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 197 217 2.8E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS03255 488a1505a0868596d0114999439ff683 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 178 2.8E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS00365 bdafa3a6c66f4a1d04bd3d1d1e65f5e6 407 PANTHER PTHR10590 4 407 1.5E-173 T 23-04-2016 IPR008276 Concentrative nucleoside transporter GO:0005337|GO:0016020|GO:1901642 Reactome: REACT_15518|Reactome: REACT_1698 SD28_RS00365 bdafa3a6c66f4a1d04bd3d1d1e65f5e6 407 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 12 83 1.7E-15 T 23-04-2016 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: REACT_15518|Reactome: REACT_1698 SD28_RS00365 bdafa3a6c66f4a1d04bd3d1d1e65f5e6 407 PANTHER PTHR10590:SF13 4 407 1.5E-173 T 23-04-2016 SD28_RS00365 bdafa3a6c66f4a1d04bd3d1d1e65f5e6 407 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 201 406 2.4E-52 T 23-04-2016 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: REACT_15518|Reactome: REACT_1698 SD28_RS06375 f5ae5d557e1c93cb9aa87c0f3b7c4bbf 358 Pfam PF01571 Aminomethyltransferase folate-binding domain 6 251 8.0E-87 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal SD28_RS06375 f5ae5d557e1c93cb9aa87c0f3b7c4bbf 358 PANTHER PTHR13847:SF5 4 328 7.7E-66 T 23-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 SD28_RS06375 f5ae5d557e1c93cb9aa87c0f3b7c4bbf 358 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 260 347 1.6E-18 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 SD28_RS06375 f5ae5d557e1c93cb9aa87c0f3b7c4bbf 358 PANTHER PTHR13847 4 328 7.7E-66 T 23-04-2016 SD28_RS06375 f5ae5d557e1c93cb9aa87c0f3b7c4bbf 358 SUPERFAMILY SSF101790 268 355 1.52E-20 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain SD28_RS06375 f5ae5d557e1c93cb9aa87c0f3b7c4bbf 358 PIRSF PIRSF006487 1 357 8.1E-85 T 23-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 SD28_RS06375 f5ae5d557e1c93cb9aa87c0f3b7c4bbf 358 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 2 353 3.6E-119 T 23-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 SD28_RS06375 f5ae5d557e1c93cb9aa87c0f3b7c4bbf 358 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 353 40.689 T 23-04-2016 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 SD28_RS06375 f5ae5d557e1c93cb9aa87c0f3b7c4bbf 358 Gene3D G3DSA:2.40.30.110 278 355 2.1E-21 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 SD28_RS06375 f5ae5d557e1c93cb9aa87c0f3b7c4bbf 358 Gene3D G3DSA:3.30.1360.120 2 52 1.1E-49 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 SD28_RS06375 f5ae5d557e1c93cb9aa87c0f3b7c4bbf 358 Gene3D G3DSA:3.30.1360.120 142 229 1.1E-49 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 SD28_RS06375 f5ae5d557e1c93cb9aa87c0f3b7c4bbf 358 Gene3D G3DSA:3.30.70.1400 53 134 2.3E-29 T 23-04-2016 SD28_RS06375 f5ae5d557e1c93cb9aa87c0f3b7c4bbf 358 SUPERFAMILY SSF103025 3 276 5.16E-90 T 23-04-2016 SD28_RS01665 c62493b1ab9912353221601152326cc5 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 263 7.0E-103 T 23-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 SD28_RS01665 c62493b1ab9912353221601152326cc5 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 23-04-2016 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 SD28_RS01665 c62493b1ab9912353221601152326cc5 268 PANTHER PTHR10314:SF4 74 131 1.4E-27 T 23-04-2016 SD28_RS01665 c62493b1ab9912353221601152326cc5 268 PANTHER PTHR10314:SF4 1 51 1.4E-27 T 23-04-2016 SD28_RS01665 c62493b1ab9912353221601152326cc5 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 265 37.628 T 23-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 SD28_RS01665 c62493b1ab9912353221601152326cc5 268 Pfam PF00290 Tryptophan synthase alpha chain 8 266 4.9E-94 T 23-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 SD28_RS01665 c62493b1ab9912353221601152326cc5 268 Gene3D G3DSA:3.20.20.70 1 267 2.8E-94 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS01665 c62493b1ab9912353221601152326cc5 268 PANTHER PTHR10314 74 131 1.4E-27 T 23-04-2016 SD28_RS01665 c62493b1ab9912353221601152326cc5 268 PANTHER PTHR10314 1 51 1.4E-27 T 23-04-2016 SD28_RS01665 c62493b1ab9912353221601152326cc5 268 SUPERFAMILY SSF51366 1 266 3.77E-89 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 SD28_RS06085 464b12049c8448efc8711a1a597c6303 354 SUPERFAMILY SSF51569 1 328 6.01E-108 T 23-04-2016 SD28_RS06085 464b12049c8448efc8711a1a597c6303 354 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 349 2.4E-194 T 23-04-2016 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|UniPathway: UPA00109 SD28_RS06085 464b12049c8448efc8711a1a597c6303 354 PANTHER PTHR30304 1 352 5.0E-122 T 23-04-2016 SD28_RS06085 464b12049c8448efc8711a1a597c6303 354 PIRSF PIRSF001359 1 329 2.7E-83 T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 SD28_RS06085 464b12049c8448efc8711a1a597c6303 354 Gene3D G3DSA:3.20.20.70 1 335 7.8E-111 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS06085 464b12049c8448efc8711a1a597c6303 354 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 85 - T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 SD28_RS06085 464b12049c8448efc8711a1a597c6303 354 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 328 1.5E-97 T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 SD28_RS06085 464b12049c8448efc8711a1a597c6303 354 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 SD28_RS06085 464b12049c8448efc8711a1a597c6303 354 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 327 1.5E-93 T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 SD28_RS03175 1f37dae3b0cd07213e8f3b115334002f 294 SUPERFAMILY SSF53697 7 249 2.67E-60 T 23-04-2016 SD28_RS03175 1f37dae3b0cd07213e8f3b115334002f 294 Pfam PF13580 SIS domain 38 166 7.2E-8 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 SD28_RS03175 1f37dae3b0cd07213e8f3b115334002f 294 Gene3D G3DSA:3.40.50.10490 3 250 2.2E-74 T 23-04-2016 SD28_RS03175 1f37dae3b0cd07213e8f3b115334002f 294 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 3 294 37.297 T 23-04-2016 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|UniPathway: UPA00342 SD28_RS03175 1f37dae3b0cd07213e8f3b115334002f 294 PANTHER PTHR10088 9 294 2.7E-108 T 23-04-2016 SD28_RS03175 1f37dae3b0cd07213e8f3b115334002f 294 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 186 203 - T 23-04-2016 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|UniPathway: UPA00342 SD28_RS03175 1f37dae3b0cd07213e8f3b115334002f 294 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 9 293 1.8E-98 T 23-04-2016 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|UniPathway: UPA00342 SD28_RS02590 239b4041fefeeb8cafb01df737f32f79 231 Gene3D G3DSA:3.40.50.790 69 159 9.9E-41 T 23-04-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich SD28_RS02590 239b4041fefeeb8cafb01df737f32f79 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 42.605 T 23-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 SD28_RS02590 239b4041fefeeb8cafb01df737f32f79 231 PIRSF PIRSF002155 1 227 3.4E-75 T 23-04-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 SD28_RS02590 239b4041fefeeb8cafb01df737f32f79 231 SUPERFAMILY SSF56808 6 227 2.49E-79 T 23-04-2016 IPR023674 Ribosomal protein L1-like SD28_RS02590 239b4041fefeeb8cafb01df737f32f79 231 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 23-04-2016 IPR023673 Ribosomal protein L1, conserved site SD28_RS02590 239b4041fefeeb8cafb01df737f32f79 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 1.6E-101 T 23-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 SD28_RS02590 239b4041fefeeb8cafb01df737f32f79 231 PANTHER PTHR23105:SF5 21 229 6.8E-75 T 23-04-2016 SD28_RS02590 239b4041fefeeb8cafb01df737f32f79 231 Gene3D G3DSA:3.30.190.20 17 68 8.6E-43 T 23-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 SD28_RS02590 239b4041fefeeb8cafb01df737f32f79 231 Gene3D G3DSA:3.30.190.20 161 226 8.6E-43 T 23-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 SD28_RS02590 239b4041fefeeb8cafb01df737f32f79 231 Pfam PF00687 Ribosomal protein L1p/L10e family 30 220 1.9E-49 T 23-04-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein SD28_RS02590 239b4041fefeeb8cafb01df737f32f79 231 PANTHER PTHR23105 21 229 6.8E-75 T 23-04-2016 SD28_RS05655 a0d4a649dc43b8825ea4c61ae716e360 178 Pfam PF03695 Uncharacterised protein family (UPF0149) 19 175 1.1E-28 T 23-04-2016 IPR011978 Uncharacterised protein family UPF0149 SD28_RS05655 a0d4a649dc43b8825ea4c61ae716e360 178 SUPERFAMILY SSF101327 6 176 5.23E-36 T 23-04-2016 IPR011978 Uncharacterised protein family UPF0149 SD28_RS05655 a0d4a649dc43b8825ea4c61ae716e360 178 PANTHER PTHR37528 1 176 2.9E-21 T 23-04-2016 SD28_RS02485 eb3da767955b665126f3f4ac67326e52 501 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 10 492 3.2E-120 T 23-04-2016 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 SD28_RS02485 eb3da767955b665126f3f4ac67326e52 501 SUPERFAMILY SSF55931 9 489 2.55E-138 T 23-04-2016 SD28_RS02485 eb3da767955b665126f3f4ac67326e52 501 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 501 128.875 T 23-04-2016 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 SD28_RS02485 eb3da767955b665126f3f4ac67326e52 501 Pfam PF04262 Glutamate-cysteine ligase 10 361 2.9E-119 T 23-04-2016 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 SD28_RS02485 eb3da767955b665126f3f4ac67326e52 501 PANTHER PTHR38761 10 500 2.5E-127 T 23-04-2016 SD28_RS00870 32456fc6bb9163635c215a928559bf03 117 SUPERFAMILY SSF81343 6 114 3.6E-17 T 23-04-2016 SD28_RS00870 32456fc6bb9163635c215a928559bf03 117 PIRSF PIRSF000169 1 117 1.3E-32 T 23-04-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 SD28_RS00870 32456fc6bb9163635c215a928559bf03 117 PANTHER PTHR38689 1 117 2.2E-18 T 23-04-2016 SD28_RS00870 32456fc6bb9163635c215a928559bf03 117 Gene3D G3DSA:1.20.1300.10 5 115 2.0E-24 T 23-04-2016 SD28_RS00870 32456fc6bb9163635c215a928559bf03 117 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 8 115 2.9E-22 T 23-04-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 SD28_RS00870 32456fc6bb9163635c215a928559bf03 117 PANTHER PTHR38689:SF1 1 117 2.2E-18 T 23-04-2016 SD28_RS01055 a9e8790972f020652490f120b491feb6 151 SUPERFAMILY SSF50249 6 151 1.95E-45 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01055 a9e8790972f020652490f120b491feb6 151 PANTHER PTHR10302 1 150 3.6E-37 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 SD28_RS01055 a9e8790972f020652490f120b491feb6 151 PIRSF PIRSF002070 3 149 5.4E-35 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 SD28_RS01055 a9e8790972f020652490f120b491feb6 151 Gene3D G3DSA:2.40.50.140 5 151 8.7E-44 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01055 a9e8790972f020652490f120b491feb6 151 Hamap MF_00984 Single-stranded DNA-binding protein. 6 108 30.563 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 SD28_RS01055 a9e8790972f020652490f120b491feb6 151 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 5 151 1.9E-39 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 SD28_RS01055 a9e8790972f020652490f120b491feb6 151 Pfam PF00436 Single-strand binding protein family 6 103 2.4E-34 T 23-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 SD28_RS01755 a8bfc89060414c50deed328fec08b7f5 539 PANTHER PTHR11669 1 412 6.8E-144 T 23-04-2016 SD28_RS01755 a8bfc89060414c50deed328fec08b7f5 539 SUPERFAMILY SSF52540 33 223 1.49E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01755 a8bfc89060414c50deed328fec08b7f5 539 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 233 359 1.4E-16 T 23-04-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 SD28_RS01755 a8bfc89060414c50deed328fec08b7f5 539 Gene3D G3DSA:1.10.8.60 167 242 2.3E-28 T 23-04-2016 SD28_RS01755 a8bfc89060414c50deed328fec08b7f5 539 Gene3D G3DSA:1.20.272.10 243 359 2.2E-20 T 23-04-2016 SD28_RS01755 a8bfc89060414c50deed328fec08b7f5 539 SUPERFAMILY SSF48019 243 362 2.55E-14 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 SD28_RS01755 a8bfc89060414c50deed328fec08b7f5 539 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 415 535 9.0E-5 T 23-04-2016 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS01755 a8bfc89060414c50deed328fec08b7f5 539 PANTHER PTHR11669:SF0 1 412 6.8E-144 T 23-04-2016 SD28_RS01755 a8bfc89060414c50deed328fec08b7f5 539 Pfam PF13177 DNA polymerase III, delta subunit 20 178 4.2E-42 T 23-04-2016 SD28_RS01755 a8bfc89060414c50deed328fec08b7f5 539 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 355 2.9E-129 T 23-04-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 SD28_RS01755 a8bfc89060414c50deed328fec08b7f5 539 Gene3D G3DSA:3.40.50.300 15 166 1.1E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01755 a8bfc89060414c50deed328fec08b7f5 539 SMART SM00382 37 179 1.7E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS05960 7c5c7f8882574218575a042f8efa5167 382 PANTHER PTHR30605 1 381 3.7E-139 T 23-04-2016 SD28_RS05960 7c5c7f8882574218575a042f8efa5167 382 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 5 382 35.247 T 23-04-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 SD28_RS05960 7c5c7f8882574218575a042f8efa5167 382 SUPERFAMILY SSF53067 151 336 2.88E-18 T 23-04-2016 SD28_RS05960 7c5c7f8882574218575a042f8efa5167 382 SUPERFAMILY SSF53067 71 116 2.88E-18 T 23-04-2016 SD28_RS05960 7c5c7f8882574218575a042f8efa5167 382 SUPERFAMILY SSF53067 6 28 2.88E-18 T 23-04-2016 SD28_RS05960 7c5c7f8882574218575a042f8efa5167 382 PANTHER PTHR30605:SF0 1 381 3.7E-139 T 23-04-2016 SD28_RS05960 7c5c7f8882574218575a042f8efa5167 382 Pfam PF03702 Uncharacterised protein family (UPF0075) 6 381 2.5E-96 T 23-04-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 SD28_RS05960 7c5c7f8882574218575a042f8efa5167 382 Gene3D G3DSA:3.30.420.40 6 207 1.8E-63 T 23-04-2016 SD28_RS00220 1324508b9eca5c04f217b5ff0ef3c174 120 PANTHER PTHR21164 1 119 1.2E-40 T 23-04-2016 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 SD28_RS00220 1324508b9eca5c04f217b5ff0ef3c174 120 Pfam PF07736 Chorismate mutase type I 3 117 1.9E-43 T 23-04-2016 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 SD28_RS00220 1324508b9eca5c04f217b5ff0ef3c174 120 TIGRFAM TIGR01796 CM_mono_aroH: chorismate mutase 3 117 1.5E-38 T 23-04-2016 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 SD28_RS00220 1324508b9eca5c04f217b5ff0ef3c174 120 PIRSF PIRSF005965 1 120 1.3E-46 T 23-04-2016 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 SD28_RS00220 1324508b9eca5c04f217b5ff0ef3c174 120 PANTHER PTHR21164:SF0 1 119 1.2E-40 T 23-04-2016 SD28_RS00220 1324508b9eca5c04f217b5ff0ef3c174 120 Gene3D G3DSA:3.30.1330.40 2 119 1.8E-47 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like SD28_RS00220 1324508b9eca5c04f217b5ff0ef3c174 120 SUPERFAMILY SSF55298 2 118 9.42E-44 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like SD28_RS00220 1324508b9eca5c04f217b5ff0ef3c174 120 ProDom PD031888 MUTASE CHORISMATE AROH THE CLASS ISOMERASE TRANSCRIPTION BIOSYNTHESIS CM 3D-STRUCTURE 8 117 3.0E-40 T 23-04-2016 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 SD28_RS04805 ffe28d46bfc6e1320c23a0a4bd0754a9 327 Gene3D G3DSA:3.40.250.10 109 226 1.2E-40 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS04805 ffe28d46bfc6e1320c23a0a4bd0754a9 327 SUPERFAMILY SSF52821 94 241 3.98E-31 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS04805 ffe28d46bfc6e1320c23a0a4bd0754a9 327 PANTHER PTHR22778 3 288 5.1E-113 T 23-04-2016 SD28_RS04805 ffe28d46bfc6e1320c23a0a4bd0754a9 327 SMART SM00450 113 214 2.1E-22 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS04805 ffe28d46bfc6e1320c23a0a4bd0754a9 327 Pfam PF00581 Rhodanese-like domain 115 210 7.6E-10 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS04805 ffe28d46bfc6e1320c23a0a4bd0754a9 327 PANTHER PTHR22778:SF12 3 288 5.1E-113 T 23-04-2016 SD28_RS04805 ffe28d46bfc6e1320c23a0a4bd0754a9 327 Hamap MF_00469 UPF0176 protein YceA [yceA]. 2 254 44.534 T 23-04-2016 IPR020936 Uncharacterised protein family UPF0176 SD28_RS02085 bf99700b9b2a48651828982c9b812542 332 Gene3D G3DSA:3.40.50.410 93 285 1.6E-16 T 23-04-2016 IPR002035 von Willebrand factor, type A SD28_RS02085 bf99700b9b2a48651828982c9b812542 332 PANTHER PTHR22550:SF5 1 269 1.7E-27 T 23-04-2016 SD28_RS02085 bf99700b9b2a48651828982c9b812542 332 Pfam PF13519 von Willebrand factor type A domain 93 199 4.3E-17 T 23-04-2016 IPR002035 von Willebrand factor, type A SD28_RS02085 bf99700b9b2a48651828982c9b812542 332 SMART SM00327 89 269 4.8E-11 T 23-04-2016 IPR002035 von Willebrand factor, type A SD28_RS02085 bf99700b9b2a48651828982c9b812542 332 SUPERFAMILY SSF53300 93 283 3.02E-24 T 23-04-2016 IPR002035 von Willebrand factor, type A SD28_RS02085 bf99700b9b2a48651828982c9b812542 332 PANTHER PTHR22550 1 269 1.7E-27 T 23-04-2016 SD28_RS04250 99a129e0f95ad7699fe537fcec192169 224 PANTHER PTHR11934:SF11 8 219 7.9E-110 T 23-04-2016 SD28_RS04250 99a129e0f95ad7699fe537fcec192169 224 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 13 220 3.9E-65 T 23-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 SD28_RS04250 99a129e0f95ad7699fe537fcec192169 224 Gene3D G3DSA:3.40.50.1360 10 146 4.3E-53 T 23-04-2016 SD28_RS04250 99a129e0f95ad7699fe537fcec192169 224 SUPERFAMILY SSF75445 133 204 7.46E-24 T 23-04-2016 SD28_RS04250 99a129e0f95ad7699fe537fcec192169 224 Gene3D G3DSA:3.30.70.260 147 202 1.1E-29 T 23-04-2016 SD28_RS04250 99a129e0f95ad7699fe537fcec192169 224 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 55 219 9.3E-58 T 23-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 SD28_RS04250 99a129e0f95ad7699fe537fcec192169 224 SUPERFAMILY SSF100950 9 152 2.99E-42 T 23-04-2016 SD28_RS04250 99a129e0f95ad7699fe537fcec192169 224 PANTHER PTHR11934 8 219 7.9E-110 T 23-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 SD28_RS04250 99a129e0f95ad7699fe537fcec192169 224 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 9 223 30.529 T 23-04-2016 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 SD28_RS03375 47fc349cb118df98d129a36883e033d7 163 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 11 159 4.8E-51 T 23-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 SD28_RS03375 47fc349cb118df98d129a36883e033d7 163 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 11 162 31.237 T 23-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 SD28_RS03375 47fc349cb118df98d129a36883e033d7 163 SUPERFAMILY SSF54637 10 160 1.29E-42 T 23-04-2016 IPR029069 HotDog domain SD28_RS03375 47fc349cb118df98d129a36883e033d7 163 Pfam PF07977 FabA-like domain 20 154 2.6E-31 T 23-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 SD28_RS03375 47fc349cb118df98d129a36883e033d7 163 Gene3D G3DSA:3.10.129.10 4 161 1.4E-49 T 23-04-2016 IPR029069 HotDog domain SD28_RS03375 47fc349cb118df98d129a36883e033d7 163 PANTHER PTHR30272 4 163 3.2E-61 T 23-04-2016 SD28_RS05510 ddbd0ac18f55c0698818da1d6f46624b 194 Pfam PF04351 Pilus assembly protein, PilP 77 191 2.8E-12 T 23-04-2016 IPR007446 Pilus assembly protein PilP SD28_RS05245 c58002433f9f6a5eb395f6939576b6e2 491 Gene3D G3DSA:1.20.1250.20 273 485 7.8E-6 T 23-04-2016 SD28_RS05245 c58002433f9f6a5eb395f6939576b6e2 491 Gene3D G3DSA:1.20.1250.20 7 189 3.3E-17 T 23-04-2016 SD28_RS05245 c58002433f9f6a5eb395f6939576b6e2 491 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 143 155 - T 23-04-2016 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05245 c58002433f9f6a5eb395f6939576b6e2 491 PANTHER PTHR11654 251 491 7.7E-79 T 23-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05245 c58002433f9f6a5eb395f6939576b6e2 491 PANTHER PTHR11654 9 227 7.7E-79 T 23-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05245 c58002433f9f6a5eb395f6939576b6e2 491 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 7 489 4.9E-86 T 23-04-2016 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 SD28_RS05245 c58002433f9f6a5eb395f6939576b6e2 491 PANTHER PTHR11654:SF102 251 491 7.7E-79 T 23-04-2016 SD28_RS05245 c58002433f9f6a5eb395f6939576b6e2 491 PANTHER PTHR11654:SF102 9 227 7.7E-79 T 23-04-2016 SD28_RS05245 c58002433f9f6a5eb395f6939576b6e2 491 SUPERFAMILY SSF103473 10 199 8.11E-23 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS05245 c58002433f9f6a5eb395f6939576b6e2 491 SUPERFAMILY SSF103473 254 487 8.11E-23 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS05245 c58002433f9f6a5eb395f6939576b6e2 491 Pfam PF00854 POT family 78 438 5.9E-48 T 23-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS02425 2e0fd50dd8813cccb491a24e1f174d46 129 PIRSF PIRSF002131 1 129 1.5E-50 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 SD28_RS02425 2e0fd50dd8813cccb491a24e1f174d46 129 Pfam PF00411 Ribosomal protein S11 20 128 2.5E-47 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 SD28_RS02425 2e0fd50dd8813cccb491a24e1f174d46 129 SUPERFAMILY SSF53137 18 129 2.94E-46 T 23-04-2016 SD28_RS02425 2e0fd50dd8813cccb491a24e1f174d46 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 31.649 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 SD28_RS02425 2e0fd50dd8813cccb491a24e1f174d46 129 Gene3D G3DSA:3.30.420.80 7 129 1.8E-51 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 SD28_RS02425 2e0fd50dd8813cccb491a24e1f174d46 129 PANTHER PTHR11759 11 129 2.1E-62 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 SD28_RS02425 2e0fd50dd8813cccb491a24e1f174d46 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 4.4E-54 T 23-04-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06775 3b4b825743d3704a024706b95f35bd41 274 PANTHER PTHR10366:SF329 49 227 3.3E-29 T 23-04-2016 SD28_RS06775 3b4b825743d3704a024706b95f35bd41 274 Gene3D G3DSA:3.40.50.720 2 225 2.5E-26 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06775 3b4b825743d3704a024706b95f35bd41 274 Pfam PF01370 NAD dependent epimerase/dehydratase family 45 161 9.8E-15 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 SD28_RS06775 3b4b825743d3704a024706b95f35bd41 274 SUPERFAMILY SSF51735 4 225 1.73E-28 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06775 3b4b825743d3704a024706b95f35bd41 274 PANTHER PTHR10366 49 227 3.3E-29 T 23-04-2016 SD28_RS06590 1a8499dd1b1c5ddda801d1c3a12a7ea5 212 PANTHER PTHR10359 1 210 2.6E-84 T 23-04-2016 SD28_RS06590 1a8499dd1b1c5ddda801d1c3a12a7ea5 212 SMART SM00478 38 185 5.6E-53 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 SD28_RS06590 1a8499dd1b1c5ddda801d1c3a12a7ea5 212 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 1.4E-20 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 SD28_RS06590 1a8499dd1b1c5ddda801d1c3a12a7ea5 212 TIGRFAM TIGR01083 nth: endonuclease III 3 194 2.6E-83 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 SD28_RS06590 1a8499dd1b1c5ddda801d1c3a12a7ea5 212 SMART SM00525 186 206 1.8E-4 T 23-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 SD28_RS06590 1a8499dd1b1c5ddda801d1c3a12a7ea5 212 PIRSF PIRSF001435 1 211 2.2E-53 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 SD28_RS06590 1a8499dd1b1c5ddda801d1c3a12a7ea5 212 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 23-04-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 SD28_RS06590 1a8499dd1b1c5ddda801d1c3a12a7ea5 212 PANTHER PTHR10359:SF18 1 210 2.6E-84 T 23-04-2016 SD28_RS06590 1a8499dd1b1c5ddda801d1c3a12a7ea5 212 Pfam PF00633 Helix-hairpin-helix motif 100 127 5.7E-7 T 23-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 SD28_RS06590 1a8499dd1b1c5ddda801d1c3a12a7ea5 212 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 23-04-2016 IPR004035 Endonuclease III, iron-sulphur binding site SD28_RS06590 1a8499dd1b1c5ddda801d1c3a12a7ea5 212 Gene3D G3DSA:1.10.340.30 23 122 1.9E-33 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 SD28_RS06590 1a8499dd1b1c5ddda801d1c3a12a7ea5 212 Hamap MF_00942 Endonuclease III [nth]. 1 209 36.591 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 SD28_RS06590 1a8499dd1b1c5ddda801d1c3a12a7ea5 212 SUPERFAMILY SSF48150 2 208 2.98E-69 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 SD28_RS06590 1a8499dd1b1c5ddda801d1c3a12a7ea5 212 Gene3D G3DSA:1.10.1670.10 123 208 2.5E-35 T 23-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal SD28_RS02480 b38a34f7d16eb6fb6ea911319d0d10a4 513 PRINTS PR01806 Virulence factor MviN signature 53 69 1.4E-37 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ SD28_RS02480 b38a34f7d16eb6fb6ea911319d0d10a4 513 PRINTS PR01806 Virulence factor MviN signature 154 175 1.4E-37 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ SD28_RS02480 b38a34f7d16eb6fb6ea911319d0d10a4 513 PRINTS PR01806 Virulence factor MviN signature 130 154 1.4E-37 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ SD28_RS02480 b38a34f7d16eb6fb6ea911319d0d10a4 513 PRINTS PR01806 Virulence factor MviN signature 354 373 1.4E-37 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ SD28_RS02480 b38a34f7d16eb6fb6ea911319d0d10a4 513 PRINTS PR01806 Virulence factor MviN signature 258 284 1.4E-37 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ SD28_RS02480 b38a34f7d16eb6fb6ea911319d0d10a4 513 PRINTS PR01806 Virulence factor MviN signature 34 53 1.4E-37 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ SD28_RS02480 b38a34f7d16eb6fb6ea911319d0d10a4 513 PRINTS PR01806 Virulence factor MviN signature 411 428 1.4E-37 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ SD28_RS02480 b38a34f7d16eb6fb6ea911319d0d10a4 513 Pfam PF03023 MviN-like protein 29 478 6.9E-64 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ SD28_RS02480 b38a34f7d16eb6fb6ea911319d0d10a4 513 PIRSF PIRSF002869 1 513 5.2E-114 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ SD28_RS02480 b38a34f7d16eb6fb6ea911319d0d10a4 513 PANTHER PTHR11206:SF90 61 79 2.9E-24 T 23-04-2016 SD28_RS02480 b38a34f7d16eb6fb6ea911319d0d10a4 513 PANTHER PTHR11206:SF90 220 513 2.9E-24 T 23-04-2016 SD28_RS02480 b38a34f7d16eb6fb6ea911319d0d10a4 513 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 3 508 3.6E-72 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ SD28_RS02480 b38a34f7d16eb6fb6ea911319d0d10a4 513 PANTHER PTHR11206 61 79 2.9E-24 T 23-04-2016 SD28_RS02480 b38a34f7d16eb6fb6ea911319d0d10a4 513 PANTHER PTHR11206 220 513 2.9E-24 T 23-04-2016 SD28_RS03995 214d6c2e43f81995d7150b586eb40f9a 129 ProSitePatterns PS00360 Ribosomal protein S9 signature. 68 86 - T 23-04-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 SD28_RS03995 214d6c2e43f81995d7150b586eb40f9a 129 Gene3D G3DSA:3.30.230.10 4 129 1.4E-50 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SD28_RS03995 214d6c2e43f81995d7150b586eb40f9a 129 Pfam PF00380 Ribosomal protein S9/S16 9 129 1.2E-46 T 23-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 SD28_RS03995 214d6c2e43f81995d7150b586eb40f9a 129 SUPERFAMILY SSF54211 4 129 1.9E-46 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS03995 214d6c2e43f81995d7150b586eb40f9a 129 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 129 29.706 T 23-04-2016 IPR023035 Ribosomal protein S9, bacterial/plastid SD28_RS03995 214d6c2e43f81995d7150b586eb40f9a 129 PANTHER PTHR21569 3 129 8.3E-67 T 23-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 SD28_RS02405 fe4213c78a17114312b5daa6ff7eb988 143 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 9.2E-49 T 23-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 SD28_RS02405 fe4213c78a17114312b5daa6ff7eb988 143 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 23-04-2016 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02405 fe4213c78a17114312b5daa6ff7eb988 143 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 6.7E-32 T 23-04-2016 IPR021131 Ribosomal protein L18e/L15P SD28_RS02405 fe4213c78a17114312b5daa6ff7eb988 143 Gene3D G3DSA:3.100.10.10 32 143 2.9E-26 T 23-04-2016 SD28_RS02405 fe4213c78a17114312b5daa6ff7eb988 143 PANTHER PTHR12934 1 143 2.8E-62 T 23-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 SD28_RS02405 fe4213c78a17114312b5daa6ff7eb988 143 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 143 19.035 T 23-04-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 SD28_RS02405 fe4213c78a17114312b5daa6ff7eb988 143 SUPERFAMILY SSF52080 4 143 1.57E-46 T 23-04-2016 IPR021131 Ribosomal protein L18e/L15P SD28_RS05200 c74b8fef5ab23555054797b7dea5ae6f 326 Pfam PF05153 Myo-inositol oxygenase 140 326 1.8E-56 T 23-04-2016 IPR007828 Inositol oxygenase GO:0005506|GO:0005737|GO:0019310|GO:0050113|GO:0055114 KEGG: 00053+1.13.99.1|KEGG: 00562+1.13.99.1|MetaCyc: PWY-4841|UniPathway: UPA00111 SD28_RS05200 c74b8fef5ab23555054797b7dea5ae6f 326 Pfam PF05153 Myo-inositol oxygenase 22 97 9.1E-19 T 23-04-2016 IPR007828 Inositol oxygenase GO:0005506|GO:0005737|GO:0019310|GO:0050113|GO:0055114 KEGG: 00053+1.13.99.1|KEGG: 00562+1.13.99.1|MetaCyc: PWY-4841|UniPathway: UPA00111 SD28_RS05200 c74b8fef5ab23555054797b7dea5ae6f 326 SUPERFAMILY SSF109604 127 322 6.28E-50 T 23-04-2016 SD28_RS05200 c74b8fef5ab23555054797b7dea5ae6f 326 PANTHER PTHR12588 12 92 9.0E-89 T 23-04-2016 IPR007828 Inositol oxygenase GO:0005506|GO:0005737|GO:0019310|GO:0050113|GO:0055114 KEGG: 00053+1.13.99.1|KEGG: 00562+1.13.99.1|MetaCyc: PWY-4841|UniPathway: UPA00111 SD28_RS05200 c74b8fef5ab23555054797b7dea5ae6f 326 PANTHER PTHR12588 113 123 9.0E-89 T 23-04-2016 IPR007828 Inositol oxygenase GO:0005506|GO:0005737|GO:0019310|GO:0050113|GO:0055114 KEGG: 00053+1.13.99.1|KEGG: 00562+1.13.99.1|MetaCyc: PWY-4841|UniPathway: UPA00111 SD28_RS05200 c74b8fef5ab23555054797b7dea5ae6f 326 PANTHER PTHR12588 146 326 9.0E-89 T 23-04-2016 IPR007828 Inositol oxygenase GO:0005506|GO:0005737|GO:0019310|GO:0050113|GO:0055114 KEGG: 00053+1.13.99.1|KEGG: 00562+1.13.99.1|MetaCyc: PWY-4841|UniPathway: UPA00111 SD28_RS05200 c74b8fef5ab23555054797b7dea5ae6f 326 SUPERFAMILY SSF109604 13 94 3.3E-18 T 23-04-2016 SD28_RS05380 8488b6145d5ad58626ba3f4d5ac22678 480 PANTHER PTHR11785:SF216 8 464 1.3E-92 T 23-04-2016 SD28_RS05380 8488b6145d5ad58626ba3f4d5ac22678 480 PIRSF PIRSF006060 4 478 2.3E-47 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS05380 8488b6145d5ad58626ba3f4d5ac22678 480 Pfam PF13520 Amino acid permease 16 445 2.7E-59 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS05380 8488b6145d5ad58626ba3f4d5ac22678 480 PANTHER PTHR11785 8 464 1.3E-92 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS03525 088ac09555cf7b3500feb80473e54e75 420 Pfam PF03222 Tryptophan/tyrosine permease family 18 415 1.7E-10 T 23-04-2016 IPR018227 Tryptophan/tyrosine permease GO:0003333 SD28_RS03525 088ac09555cf7b3500feb80473e54e75 420 PANTHER PTHR35334 11 419 2.8E-81 T 23-04-2016 SD28_RS04650 e881b061a453141688fd36d0dbc720c9 225 PANTHER PTHR21343:SF13 1 225 3.9E-51 T 23-04-2016 SD28_RS04650 e881b061a453141688fd36d0dbc720c9 225 PANTHER PTHR21343 1 225 3.9E-51 T 23-04-2016 SD28_RS04650 e881b061a453141688fd36d0dbc720c9 225 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 205 26.557 T 23-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 SD28_RS04650 e881b061a453141688fd36d0dbc720c9 225 PIRSF PIRSF006755 1 220 1.7E-57 T 23-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 SD28_RS04650 e881b061a453141688fd36d0dbc720c9 225 Gene3D G3DSA:3.40.50.300 1 208 3.1E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04650 e881b061a453141688fd36d0dbc720c9 225 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 5 174 1.8E-45 T 23-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 SD28_RS04650 e881b061a453141688fd36d0dbc720c9 225 SUPERFAMILY SSF52540 1 207 2.0E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04650 e881b061a453141688fd36d0dbc720c9 225 Pfam PF13500 AAA domain 3 207 1.6E-38 T 23-04-2016 SD28_RS02740 bfc669b65e9a9138c89455c8e43a7a15 792 SUPERFAMILY SSF46785 725 791 1.5E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS02740 bfc669b65e9a9138c89455c8e43a7a15 792 SMART SM00843 725 790 2.2E-37 T 23-04-2016 IPR018541 FtsK gamma domain SD28_RS02740 bfc669b65e9a9138c89455c8e43a7a15 792 Gene3D G3DSA:3.40.50.300 384 692 3.5E-89 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02740 bfc669b65e9a9138c89455c8e43a7a15 792 Pfam PF09397 Ftsk gamma domain 727 787 1.6E-27 T 23-04-2016 IPR018541 FtsK gamma domain SD28_RS02740 bfc669b65e9a9138c89455c8e43a7a15 792 PANTHER PTHR22683 299 791 2.4E-255 T 23-04-2016 SD28_RS02740 bfc669b65e9a9138c89455c8e43a7a15 792 PANTHER PTHR22683:SF41 299 791 2.4E-255 T 23-04-2016 SD28_RS02740 bfc669b65e9a9138c89455c8e43a7a15 792 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 16 186 2.5E-29 T 23-04-2016 IPR025199 DNA translocase FtsK, 4TM region SD28_RS02740 bfc669b65e9a9138c89455c8e43a7a15 792 SUPERFAMILY SSF52540 384 697 1.97E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02740 bfc669b65e9a9138c89455c8e43a7a15 792 Pfam PF01580 FtsK/SpoIIIE family 410 624 8.6E-62 T 23-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 SD28_RS03495 90ff27835006163cbe45c4c0b5e39333 249 PANTHER PTHR36122 26 245 9.3E-25 T 23-04-2016 SD28_RS03495 90ff27835006163cbe45c4c0b5e39333 249 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 49 242 1.6E-33 T 23-04-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 SD28_RS03495 90ff27835006163cbe45c4c0b5e39333 249 Pfam PF04973 Nicotinamide mononucleotide transporter 51 239 4.0E-35 T 23-04-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 SD28_RS03495 90ff27835006163cbe45c4c0b5e39333 249 PANTHER PTHR36122:SF2 26 245 9.3E-25 T 23-04-2016 SD28_RS03970 a0c46b133a563891ad22029ac6f5d608 154 SUPERFAMILY SSF55804 1 146 1.7E-27 T 23-04-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 SD28_RS03970 a0c46b133a563891ad22029ac6f5d608 154 PANTHER PTHR30505 1 146 3.1E-12 T 23-04-2016 SD28_RS03970 a0c46b133a563891ad22029ac6f5d608 154 Gene3D G3DSA:3.40.930.10 1 148 2.2E-30 T 23-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- SD28_RS03970 a0c46b133a563891ad22029ac6f5d608 154 PANTHER PTHR30505:SF6 1 146 3.1E-12 T 23-04-2016 SD28_RS03970 a0c46b133a563891ad22029ac6f5d608 154 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 146 8.1E-28 T 23-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- SD28_RS04745 f903332a37836e9862dadd97c6ac2c91 695 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 8 552 1.8E-200 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS04745 f903332a37836e9862dadd97c6ac2c91 695 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 5 695 4.3E-218 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS04745 f903332a37836e9862dadd97c6ac2c91 695 Gene3D G3DSA:1.10.730.10 588 681 1.1E-4 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS04745 f903332a37836e9862dadd97c6ac2c91 695 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 9 22 6.6E-33 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS04745 f903332a37836e9862dadd97c6ac2c91 695 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 394 413 6.6E-33 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS04745 f903332a37836e9862dadd97c6ac2c91 695 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 52 64 6.6E-33 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS04745 f903332a37836e9862dadd97c6ac2c91 695 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 246 261 6.6E-33 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS04745 f903332a37836e9862dadd97c6ac2c91 695 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 318 334 6.6E-33 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS04745 f903332a37836e9862dadd97c6ac2c91 695 Pfam PF05746 DALR anticodon binding domain 587 682 1.7E-8 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 SD28_RS04745 f903332a37836e9862dadd97c6ac2c91 695 Gene3D G3DSA:1.10.3210.10 359 461 1.0E-4 T 23-04-2016 IPR006674 HD domain SD28_RS04745 f903332a37836e9862dadd97c6ac2c91 695 SUPERFAMILY SSF109604 342 492 5.71E-15 T 23-04-2016 SD28_RS04745 f903332a37836e9862dadd97c6ac2c91 695 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 5 694 23.934 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SD28_RS04745 f903332a37836e9862dadd97c6ac2c91 695 PANTHER PTHR30075 5 695 2.1E-283 T 23-04-2016 SD28_RS04745 f903332a37836e9862dadd97c6ac2c91 695 PANTHER PTHR30075:SF2 5 695 2.1E-283 T 23-04-2016 SD28_RS05585 d373d71f9dfa573d01d061bef13f7a1d 243 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 21 242 6.6E-27 T 23-04-2016 IPR005519 Acid phosphatase, class B-like SD28_RS05585 d373d71f9dfa573d01d061bef13f7a1d 243 SUPERFAMILY SSF56784 44 243 1.04E-21 T 23-04-2016 IPR023214 HAD-like domain SD28_RS05585 d373d71f9dfa573d01d061bef13f7a1d 243 Gene3D G3DSA:3.40.50.1000 34 243 3.6E-32 T 23-04-2016 IPR023214 HAD-like domain SD28_RS05585 d373d71f9dfa573d01d061bef13f7a1d 243 PANTHER PTHR31284 6 242 2.3E-28 T 23-04-2016 SD28_RS05585 d373d71f9dfa573d01d061bef13f7a1d 243 PANTHER PTHR31284:SF10 6 242 2.3E-28 T 23-04-2016 SD28_RS02360 caed644e01c0cf05000b6e9d449508bb 122 Gene3D G3DSA:2.40.150.20 1 122 1.7E-55 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 SD28_RS02360 caed644e01c0cf05000b6e9d449508bb 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.92 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 SD28_RS02360 caed644e01c0cf05000b6e9d449508bb 122 PANTHER PTHR11761 1 122 1.3E-71 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 SD28_RS02360 caed644e01c0cf05000b6e9d449508bb 122 SMART SM01374 1 122 6.7E-84 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 SD28_RS02360 caed644e01c0cf05000b6e9d449508bb 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.7E-57 T 23-04-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 SD28_RS02360 caed644e01c0cf05000b6e9d449508bb 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 23-04-2016 IPR019972 Ribosomal protein L14P, conserved site SD28_RS02360 caed644e01c0cf05000b6e9d449508bb 122 SUPERFAMILY SSF50193 1 122 3.14E-50 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 SD28_RS02360 caed644e01c0cf05000b6e9d449508bb 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 3.2E-55 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 SD28_RS02155 aecf70329d175f7565c5da0d7551d699 353 SUPERFAMILY SSF51905 1 168 2.24E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS02155 aecf70329d175f7565c5da0d7551d699 353 SUPERFAMILY SSF51905 240 346 2.24E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS02155 aecf70329d175f7565c5da0d7551d699 353 PANTHER PTHR13789 3 346 9.9E-54 T 23-04-2016 SD28_RS02155 aecf70329d175f7565c5da0d7551d699 353 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 8.1E-22 T 23-04-2016 SD28_RS02155 aecf70329d175f7565c5da0d7551d699 353 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 253 268 8.1E-22 T 23-04-2016 SD28_RS02155 aecf70329d175f7565c5da0d7551d699 353 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 268 284 8.1E-22 T 23-04-2016 SD28_RS02155 aecf70329d175f7565c5da0d7551d699 353 PANTHER PTHR13789:SF90 3 346 9.9E-54 T 23-04-2016 SD28_RS02155 aecf70329d175f7565c5da0d7551d699 353 Gene3D G3DSA:3.50.50.60 241 313 2.5E-46 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS02155 aecf70329d175f7565c5da0d7551d699 353 Gene3D G3DSA:3.50.50.60 1 173 2.5E-46 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS02155 aecf70329d175f7565c5da0d7551d699 353 Pfam PF01494 FAD binding domain 2 287 3.7E-47 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 SD28_RS02255 4881ff4c8fbe520fa4c4434357e34e57 290 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 289 5.2E-106 T 23-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 SD28_RS02255 4881ff4c8fbe520fa4c4434357e34e57 290 SUPERFAMILY SSF54713 151 289 4.32E-54 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 SD28_RS02255 4881ff4c8fbe520fa4c4434357e34e57 290 SUPERFAMILY SSF46934 4 55 3.47E-17 T 23-04-2016 IPR009060 UBA-like GO:0005515 SD28_RS02255 4881ff4c8fbe520fa4c4434357e34e57 290 Gene3D G3DSA:1.10.286.20 192 234 1.0E-21 T 23-04-2016 SD28_RS02255 4881ff4c8fbe520fa4c4434357e34e57 290 Gene3D G3DSA:3.30.479.20 151 186 1.9E-28 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 SD28_RS02255 4881ff4c8fbe520fa4c4434357e34e57 290 Gene3D G3DSA:3.30.479.20 235 270 1.9E-28 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 SD28_RS02255 4881ff4c8fbe520fa4c4434357e34e57 290 SUPERFAMILY SSF54713 56 147 5.89E-20 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 SD28_RS02255 4881ff4c8fbe520fa4c4434357e34e57 290 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 23-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 SD28_RS02255 4881ff4c8fbe520fa4c4434357e34e57 290 Hamap MF_00050 Elongation factor Ts [tsf]. 1 288 77.966 T 23-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 SD28_RS02255 4881ff4c8fbe520fa4c4434357e34e57 290 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 23-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 SD28_RS02255 4881ff4c8fbe520fa4c4434357e34e57 290 Pfam PF00889 Elongation factor TS 71 271 2.8E-70 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 SD28_RS02255 4881ff4c8fbe520fa4c4434357e34e57 290 Gene3D G3DSA:3.30.479.20 57 147 3.1E-16 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 SD28_RS02255 4881ff4c8fbe520fa4c4434357e34e57 290 PANTHER PTHR11741 1 290 4.4E-128 T 23-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 SD28_RS02255 4881ff4c8fbe520fa4c4434357e34e57 290 Gene3D G3DSA:1.10.8.10 3 55 8.1E-26 T 23-04-2016 SD28_RS05070 10a142d0c8d16cdeb05e6faad6421cb1 86 PRINTS PR00160 Glutaredoxin signature 52 65 1.4E-11 T 23-04-2016 IPR014025 Glutaredoxin subgroup SD28_RS05070 10a142d0c8d16cdeb05e6faad6421cb1 86 PRINTS PR00160 Glutaredoxin signature 3 21 1.4E-11 T 23-04-2016 IPR014025 Glutaredoxin subgroup SD28_RS05070 10a142d0c8d16cdeb05e6faad6421cb1 86 PRINTS PR00160 Glutaredoxin signature 66 79 1.4E-11 T 23-04-2016 IPR014025 Glutaredoxin subgroup SD28_RS05070 10a142d0c8d16cdeb05e6faad6421cb1 86 SUPERFAMILY SSF52833 1 77 1.21E-20 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS05070 10a142d0c8d16cdeb05e6faad6421cb1 86 Pfam PF00462 Glutaredoxin 3 69 6.5E-18 T 23-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 SD28_RS05070 10a142d0c8d16cdeb05e6faad6421cb1 86 PANTHER PTHR10168 2 77 7.1E-13 T 23-04-2016 SD28_RS05070 10a142d0c8d16cdeb05e6faad6421cb1 86 PANTHER PTHR10168:SF47 2 77 7.1E-13 T 23-04-2016 SD28_RS05070 10a142d0c8d16cdeb05e6faad6421cb1 86 Gene3D G3DSA:3.40.30.10 1 79 1.5E-28 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 SUPERFAMILY SSF52021 9 146 3.53E-53 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 PRINTS PR00097 Anthranilate synthase component II signature 356 369 8.7E-7 T 23-04-2016 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 PRINTS PR00097 Anthranilate synthase component II signature 242 251 8.7E-7 T 23-04-2016 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 PRINTS PR00097 Anthranilate synthase component II signature 271 282 8.7E-7 T 23-04-2016 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 SMART SM01097 8 138 9.8E-79 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 8 385 45.423 T 23-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 10 137 2.0E-48 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 Gene3D G3DSA:3.40.50.880 163 385 2.1E-74 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 11 382 1.6E-135 T 23-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 PANTHER PTHR11405 8 387 1.7E-177 T 23-04-2016 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 271 287 8.4E-35 T 23-04-2016 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 200 214 8.4E-35 T 23-04-2016 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 313 324 8.4E-35 T 23-04-2016 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 288 305 8.4E-35 T 23-04-2016 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 239 253 8.4E-35 T 23-04-2016 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 Gene3D G3DSA:3.50.30.20 8 143 2.0E-54 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 Pfam PF00117 Glutamine amidotransferase class-I 202 379 1.2E-45 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 SUPERFAMILY SSF52317 164 385 1.13E-57 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 PRINTS PR00096 Glutamine amidotransferase superfamily signature 242 251 4.5E-12 T 23-04-2016 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 PRINTS PR00096 Glutamine amidotransferase superfamily signature 271 282 4.5E-12 T 23-04-2016 SD28_RS01365 34b39f756cc6c9247de2d2ef4e984173 389 PRINTS PR00096 Glutamine amidotransferase superfamily signature 356 369 4.5E-12 T 23-04-2016 SD28_RS07065 ab3e49bfe1938e908c312378990b16ce 307 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 7 305 9.6E-99 T 23-04-2016 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 SD28_RS07065 ab3e49bfe1938e908c312378990b16ce 307 PANTHER PTHR22594 1 307 2.3E-82 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS07065 ab3e49bfe1938e908c312378990b16ce 307 Gene3D G3DSA:3.30.930.10 5 307 2.1E-48 T 23-04-2016 SD28_RS07065 ab3e49bfe1938e908c312378990b16ce 307 PANTHER PTHR22594:SF7 1 307 2.3E-82 T 23-04-2016 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 SD28_RS07065 ab3e49bfe1938e908c312378990b16ce 307 SUPERFAMILY SSF55681 4 307 1.07E-58 T 23-04-2016 SD28_RS07065 ab3e49bfe1938e908c312378990b16ce 307 Pfam PF00152 tRNA synthetases class II (D, K and N) 5 307 9.7E-30 T 23-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS03765 3673b31c735efb0d0b80e6e7055dbe79 201 PANTHER PTHR10381:SF22 2 198 9.1E-132 T 23-04-2016 SD28_RS03765 3673b31c735efb0d0b80e6e7055dbe79 201 SUPERFAMILY SSF52096 16 200 3.88E-74 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS03765 3673b31c735efb0d0b80e6e7055dbe79 201 PRINTS PR00127 Clp protease catalytic subunit P signature 62 82 6.6E-53 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 SD28_RS03765 3673b31c735efb0d0b80e6e7055dbe79 201 PRINTS PR00127 Clp protease catalytic subunit P signature 171 190 6.6E-53 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 SD28_RS03765 3673b31c735efb0d0b80e6e7055dbe79 201 PRINTS PR00127 Clp protease catalytic subunit P signature 93 110 6.6E-53 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 SD28_RS03765 3673b31c735efb0d0b80e6e7055dbe79 201 PRINTS PR00127 Clp protease catalytic subunit P signature 22 37 6.6E-53 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 SD28_RS03765 3673b31c735efb0d0b80e6e7055dbe79 201 PRINTS PR00127 Clp protease catalytic subunit P signature 114 133 6.6E-53 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 SD28_RS03765 3673b31c735efb0d0b80e6e7055dbe79 201 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 115 128 - T 23-04-2016 IPR033135 ClpP, histidine active site SD28_RS03765 3673b31c735efb0d0b80e6e7055dbe79 201 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 93 104 - T 23-04-2016 IPR018215 ClpP, Ser active site SD28_RS03765 3673b31c735efb0d0b80e6e7055dbe79 201 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 6 196 44.359 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 SD28_RS03765 3673b31c735efb0d0b80e6e7055dbe79 201 Pfam PF00574 Clp protease 16 195 3.5E-87 T 23-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA SD28_RS03765 3673b31c735efb0d0b80e6e7055dbe79 201 PANTHER PTHR10381 2 198 9.1E-132 T 23-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA SD28_RS03765 3673b31c735efb0d0b80e6e7055dbe79 201 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 5 194 2.0E-104 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 SD28_RS03765 3673b31c735efb0d0b80e6e7055dbe79 201 Gene3D G3DSA:3.90.226.10 6 195 4.9E-88 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS01855 8ed7b4f104475f349e1a0c10616d19e2 396 Pfam PF13000 Acetyl-coenzyme A transporter 1 6 149 3.3E-17 T 23-04-2016 IPR024371 Acetyl-coenzyme A transporter 1 GO:0008521|GO:0016021 SD28_RS01855 8ed7b4f104475f349e1a0c10616d19e2 396 SUPERFAMILY SSF103473 8 391 2.09E-31 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS01855 8ed7b4f104475f349e1a0c10616d19e2 396 PANTHER PTHR12778 8 385 2.9E-54 T 23-04-2016 SD28_RS01855 8ed7b4f104475f349e1a0c10616d19e2 396 Gene3D G3DSA:1.20.1250.20 8 192 3.0E-12 T 23-04-2016 SD28_RS01855 8ed7b4f104475f349e1a0c10616d19e2 396 Gene3D G3DSA:1.20.1250.20 204 390 1.7E-8 T 23-04-2016 SD28_RS00125 03554675e536bc375fd8507465d42da1 358 PANTHER PTHR10120 337 351 3.8E-56 T 23-04-2016 SD28_RS00125 03554675e536bc375fd8507465d42da1 358 PANTHER PTHR10120 66 314 3.8E-56 T 23-04-2016 SD28_RS00125 03554675e536bc375fd8507465d42da1 358 Gene3D G3DSA:3.30.2010.10 119 203 2.0E-24 T 23-04-2016 SD28_RS00125 03554675e536bc375fd8507465d42da1 358 PANTHER PTHR10120:SF19 337 351 3.8E-56 T 23-04-2016 SD28_RS00125 03554675e536bc375fd8507465d42da1 358 PANTHER PTHR10120:SF19 66 314 3.8E-56 T 23-04-2016 SD28_RS00125 03554675e536bc375fd8507465d42da1 358 Pfam PF01435 Peptidase family M48 124 351 1.6E-37 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 SD28_RS07095 dca01214358919f45a7ea72b8346bce4 134 PANTHER PTHR38590:SF1 1 125 1.2E-28 T 23-04-2016 SD28_RS07095 dca01214358919f45a7ea72b8346bce4 134 Pfam PF04480 Protein of unknown function (DUF559) 10 110 2.9E-29 T 23-04-2016 IPR007569 Domain of unknown function DUF559 SD28_RS07095 dca01214358919f45a7ea72b8346bce4 134 SUPERFAMILY SSF52980 10 120 1.61E-10 T 23-04-2016 IPR011335 Restriction endonuclease type II-like SD28_RS07095 dca01214358919f45a7ea72b8346bce4 134 PANTHER PTHR38590 1 125 1.2E-28 T 23-04-2016 SD28_RS01600 743090f0bba42f8d6d2b992280cf094b 307 PIRSF PIRSF026649 1 307 1.3E-93 T 23-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 SD28_RS01600 743090f0bba42f8d6d2b992280cf094b 307 PANTHER PTHR30606 4 307 6.5E-56 T 23-04-2016 SD28_RS01600 743090f0bba42f8d6d2b992280cf094b 307 PANTHER PTHR30606:SF5 4 307 6.5E-56 T 23-04-2016 SD28_RS01600 743090f0bba42f8d6d2b992280cf094b 307 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 3 298 2.6E-52 T 23-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 SD28_RS03895 58f6d9fa2492afd7844df3f0b13d8aee 272 Gene3D G3DSA:3.40.50.880 20 228 1.5E-26 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS03895 58f6d9fa2492afd7844df3f0b13d8aee 272 SUPERFAMILY SSF52317 14 228 3.11E-25 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS03895 58f6d9fa2492afd7844df3f0b13d8aee 272 TIGRFAM TIGR02069 cyanophycinase: cyanophycinase 15 263 4.7E-76 T 23-04-2016 IPR011811 Peptidase S51, cyanophycinase GO:0016787|GO:0044260 MetaCyc: PWY-7052 SD28_RS03895 58f6d9fa2492afd7844df3f0b13d8aee 272 PANTHER PTHR36175 12 267 8.4E-63 T 23-04-2016 SD28_RS03895 58f6d9fa2492afd7844df3f0b13d8aee 272 PIRSF PIRSF032067 1 272 7.1E-71 T 23-04-2016 IPR011811 Peptidase S51, cyanophycinase GO:0016787|GO:0044260 MetaCyc: PWY-7052 SD28_RS03895 58f6d9fa2492afd7844df3f0b13d8aee 272 Pfam PF03575 Peptidase family S51 17 216 6.8E-20 T 23-04-2016 IPR005320 Peptidase S51 GO:0006508|GO:0008236 SD28_RS04075 b464618c683a8dd0cdd4823857797f99 485 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 11 470 6.7E-93 T 23-04-2016 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 SD28_RS04075 b464618c683a8dd0cdd4823857797f99 485 Gene3D G3DSA:1.20.1250.20 12 190 3.6E-17 T 23-04-2016 SD28_RS04075 b464618c683a8dd0cdd4823857797f99 485 PANTHER PTHR11654 12 480 9.0E-120 T 23-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS04075 b464618c683a8dd0cdd4823857797f99 485 SUPERFAMILY SSF103473 242 465 1.2E-26 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS04075 b464618c683a8dd0cdd4823857797f99 485 SUPERFAMILY SSF103473 8 192 1.2E-26 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS04075 b464618c683a8dd0cdd4823857797f99 485 Pfam PF00854 POT family 81 428 1.7E-51 T 23-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS04075 b464618c683a8dd0cdd4823857797f99 485 PANTHER PTHR11654:SF99 12 480 9.0E-120 T 23-04-2016 SD28_RS05055 64a8e73fb2cd2818b5e2b70d98d880fa 691 Gene3D G3DSA:3.40.50.300 282 389 2.9E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05055 64a8e73fb2cd2818b5e2b70d98d880fa 691 Gene3D G3DSA:3.40.50.300 556 622 2.9E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05055 64a8e73fb2cd2818b5e2b70d98d880fa 691 Gene3D G3DSA:3.40.50.300 2 274 2.4E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05055 64a8e73fb2cd2818b5e2b70d98d880fa 691 Pfam PF13361 UvrD-like helicase C-terminal domain 291 619 1.3E-28 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 SD28_RS05055 64a8e73fb2cd2818b5e2b70d98d880fa 691 SUPERFAMILY SSF52540 469 622 4.23E-89 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05055 64a8e73fb2cd2818b5e2b70d98d880fa 691 SUPERFAMILY SSF52540 2 412 4.23E-89 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05055 64a8e73fb2cd2818b5e2b70d98d880fa 691 PANTHER PTHR11070 1 495 1.0E-84 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 SD28_RS05055 64a8e73fb2cd2818b5e2b70d98d880fa 691 PANTHER PTHR11070 543 617 1.0E-84 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 SD28_RS05055 64a8e73fb2cd2818b5e2b70d98d880fa 691 Pfam PF00580 UvrD/REP helicase N-terminal domain 4 270 6.1E-40 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 SD28_RS06730 3b96d8b2ec2ad3dad85ded5f9da0624c 340 Gene3D G3DSA:3.90.1210.10 288 339 2.5E-24 T 23-04-2016 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal SD28_RS06730 3b96d8b2ec2ad3dad85ded5f9da0624c 340 PANTHER PTHR23416:SF62 1 297 3.3E-101 T 23-04-2016 SD28_RS06730 3b96d8b2ec2ad3dad85ded5f9da0624c 340 Gene3D G3DSA:3.20.20.70 2 271 5.0E-106 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS06730 3b96d8b2ec2ad3dad85ded5f9da0624c 340 Pfam PF03102 NeuB family 34 272 7.3E-93 T 23-04-2016 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 SD28_RS06730 3b96d8b2ec2ad3dad85ded5f9da0624c 340 SUPERFAMILY SSF51269 283 339 2.83E-18 T 23-04-2016 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal SD28_RS06730 3b96d8b2ec2ad3dad85ded5f9da0624c 340 SUPERFAMILY SSF51569 1 299 1.83E-90 T 23-04-2016 SD28_RS06730 3b96d8b2ec2ad3dad85ded5f9da0624c 340 TIGRFAM TIGR03586 PseI: pseudaminic acid synthase 13 339 7.8E-155 T 23-04-2016 IPR020030 Pseudaminic acid biosynthesis, PseI KEGG: 00520+2.5.1.97|MetaCyc: PWY-6143 SD28_RS06730 3b96d8b2ec2ad3dad85ded5f9da0624c 340 PANTHER PTHR23416 1 297 3.3E-101 T 23-04-2016 SD28_RS06730 3b96d8b2ec2ad3dad85ded5f9da0624c 340 Pfam PF08666 SAF domain 288 332 1.8E-6 T 23-04-2016 IPR013974 SAF domain SD28_RS04770 47338d85ceb8528fcbaacb8c12eff6c5 145 PANTHER PTHR11079 1 143 3.1E-61 T 23-04-2016 SD28_RS04770 47338d85ceb8528fcbaacb8c12eff6c5 145 Gene3D G3DSA:3.40.140.10 2 133 9.0E-38 T 23-04-2016 SD28_RS04770 47338d85ceb8528fcbaacb8c12eff6c5 145 PANTHER PTHR11079:SF63 1 143 3.1E-61 T 23-04-2016 SD28_RS04770 47338d85ceb8528fcbaacb8c12eff6c5 145 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 3 97 3.3E-22 T 23-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 SD28_RS04770 47338d85ceb8528fcbaacb8c12eff6c5 145 SUPERFAMILY SSF53927 2 143 3.68E-38 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 SD28_RS03385 044c93d349b930144bb8df14922beef9 383 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 1 380 34.375 T 23-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 SD28_RS03385 044c93d349b930144bb8df14922beef9 383 PANTHER PTHR30372 1 364 4.4E-96 T 23-04-2016 SD28_RS03385 044c93d349b930144bb8df14922beef9 383 PANTHER PTHR30372:SF0 1 364 4.4E-96 T 23-04-2016 SD28_RS03385 044c93d349b930144bb8df14922beef9 383 Pfam PF02684 Lipid-A-disaccharide synthetase 3 352 7.1E-103 T 23-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 SD28_RS03385 044c93d349b930144bb8df14922beef9 383 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 3 373 7.2E-102 T 23-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 SD28_RS03385 044c93d349b930144bb8df14922beef9 383 SUPERFAMILY SSF53756 1 379 1.08E-28 T 23-04-2016 SD28_RS03385 044c93d349b930144bb8df14922beef9 383 Gene3D G3DSA:3.40.50.2000 156 346 2.7E-5 T 23-04-2016 SD28_RS05475 8eddaab493b1afe5b4c8934da0e9b8f2 501 PANTHER PTHR11785:SF322 437 485 4.8E-70 T 23-04-2016 SD28_RS05475 8eddaab493b1afe5b4c8934da0e9b8f2 501 PANTHER PTHR11785:SF322 7 397 4.8E-70 T 23-04-2016 SD28_RS05475 8eddaab493b1afe5b4c8934da0e9b8f2 501 Pfam PF13520 Amino acid permease 11 443 3.3E-32 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS05475 8eddaab493b1afe5b4c8934da0e9b8f2 501 PIRSF PIRSF006060 1 496 4.0E-58 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS05475 8eddaab493b1afe5b4c8934da0e9b8f2 501 PANTHER PTHR11785 437 485 4.8E-70 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS05475 8eddaab493b1afe5b4c8934da0e9b8f2 501 PANTHER PTHR11785 7 397 4.8E-70 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS04065 ca98229179a5dd3a4480fdec19c43c61 509 PRINTS PR01036 Tetracycline resistance protein TetB signature 22 46 6.9E-6 T 23-04-2016 SD28_RS04065 ca98229179a5dd3a4480fdec19c43c61 509 PRINTS PR01036 Tetracycline resistance protein TetB signature 113 133 6.9E-6 T 23-04-2016 SD28_RS04065 ca98229179a5dd3a4480fdec19c43c61 509 PRINTS PR01036 Tetracycline resistance protein TetB signature 143 167 6.9E-6 T 23-04-2016 SD28_RS04065 ca98229179a5dd3a4480fdec19c43c61 509 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 20 492 5.9E-92 T 23-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 SD28_RS04065 ca98229179a5dd3a4480fdec19c43c61 509 PANTHER PTHR23501 15 502 2.5E-109 T 23-04-2016 SD28_RS04065 ca98229179a5dd3a4480fdec19c43c61 509 SUPERFAMILY SSF103473 252 424 9.02E-64 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS04065 ca98229179a5dd3a4480fdec19c43c61 509 SUPERFAMILY SSF103473 12 204 9.02E-64 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS04065 ca98229179a5dd3a4480fdec19c43c61 509 SUPERFAMILY SSF103473 473 498 9.02E-64 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS04065 ca98229179a5dd3a4480fdec19c43c61 509 PANTHER PTHR23501:SF69 15 502 2.5E-109 T 23-04-2016 SD28_RS04065 ca98229179a5dd3a4480fdec19c43c61 509 Gene3D G3DSA:1.20.1250.20 263 425 1.4E-22 T 23-04-2016 SD28_RS04065 ca98229179a5dd3a4480fdec19c43c61 509 Gene3D G3DSA:1.20.1250.20 474 501 1.4E-22 T 23-04-2016 SD28_RS04065 ca98229179a5dd3a4480fdec19c43c61 509 Gene3D G3DSA:1.20.1250.20 21 200 2.4E-31 T 23-04-2016 SD28_RS04065 ca98229179a5dd3a4480fdec19c43c61 509 Pfam PF07690 Major Facilitator Superfamily 24 414 1.0E-49 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS04795 d54321e287be164255a0742183f4b45b 671 Pfam PF00580 UvrD/REP helicase N-terminal domain 5 265 6.8E-71 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 SD28_RS04795 d54321e287be164255a0742183f4b45b 671 Gene3D G3DSA:3.40.50.300 182 279 1.2E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04795 d54321e287be164255a0742183f4b45b 671 Gene3D G3DSA:3.40.50.300 2 106 1.2E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04795 d54321e287be164255a0742183f4b45b 671 Gene3D G3DSA:1.10.10.160 110 180 8.2E-14 T 23-04-2016 IPR013986 DExx box DNA helicase domain SD28_RS04795 d54321e287be164255a0742183f4b45b 671 SUPERFAMILY SSF52540 2 640 1.21E-153 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04795 d54321e287be164255a0742183f4b45b 671 Gene3D G3DSA:1.10.486.10 383 540 1.6E-30 T 23-04-2016 SD28_RS04795 d54321e287be164255a0742183f4b45b 671 PANTHER PTHR11070:SF19 1 663 8.7E-267 T 23-04-2016 SD28_RS04795 d54321e287be164255a0742183f4b45b 671 Gene3D G3DSA:3.40.50.300 554 642 3.3E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04795 d54321e287be164255a0742183f4b45b 671 Gene3D G3DSA:3.40.50.300 280 382 3.3E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04795 d54321e287be164255a0742183f4b45b 671 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 3 671 37.392 T 23-04-2016 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 SD28_RS04795 d54321e287be164255a0742183f4b45b 671 Pfam PF13361 UvrD-like helicase C-terminal domain 271 617 7.6E-63 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 SD28_RS04795 d54321e287be164255a0742183f4b45b 671 PANTHER PTHR11070 1 663 8.7E-267 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 SD28_RS07085 aa076abda2ed91b0ce1b0a4e82773220 1470 SUPERFAMILY SSF51120 1185 1297 4.19E-7 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal SD28_RS07085 aa076abda2ed91b0ce1b0a4e82773220 1470 Gene3D G3DSA:2.150.10.10 1049 1180 1.7E-8 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal SD28_RS07085 aa076abda2ed91b0ce1b0a4e82773220 1470 Gene3D G3DSA:2.150.10.10 1190 1401 6.6E-8 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal SD28_RS07085 aa076abda2ed91b0ce1b0a4e82773220 1470 PANTHER PTHR39431:SF1 450 593 1.1E-23 T 23-04-2016 SD28_RS07085 aa076abda2ed91b0ce1b0a4e82773220 1470 SUPERFAMILY SSF53474 59 215 3.46E-9 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS07085 aa076abda2ed91b0ce1b0a4e82773220 1470 SUPERFAMILY SSF51120 1045 1161 3.27E-7 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal SD28_RS07085 aa076abda2ed91b0ce1b0a4e82773220 1470 Gene3D G3DSA:3.40.50.1820 56 228 4.0E-9 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS07085 aa076abda2ed91b0ce1b0a4e82773220 1470 Pfam PF06594 Haemolysin-type calcium binding protein related domain 997 1041 6.6E-5 T 23-04-2016 IPR010566 Haemolysin-type calcium binding-related SD28_RS07085 aa076abda2ed91b0ce1b0a4e82773220 1470 PANTHER PTHR39431 450 593 1.1E-23 T 23-04-2016 SD28_RS07085 aa076abda2ed91b0ce1b0a4e82773220 1470 Pfam PF01764 Lipase (class 3) 109 211 1.6E-4 T 23-04-2016 IPR002921 Fungal lipase-like domain GO:0006629 Reactome: REACT_14797|Reactome: REACT_604 SD28_RS04140 819dbe47c6bbc9da65b6b206d8b2e478 738 PANTHER PTHR24123 435 622 1.4E-52 T 23-04-2016 SD28_RS04140 819dbe47c6bbc9da65b6b206d8b2e478 738 SUPERFAMILY SSF48403 408 623 9.8E-50 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS04140 819dbe47c6bbc9da65b6b206d8b2e478 738 Pfam PF12796 Ankyrin repeats (3 copies) 497 555 3.3E-9 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS04140 819dbe47c6bbc9da65b6b206d8b2e478 738 Pfam PF12796 Ankyrin repeats (3 copies) 566 623 1.8E-13 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS04140 819dbe47c6bbc9da65b6b206d8b2e478 738 Pfam PF12796 Ankyrin repeats (3 copies) 429 494 9.2E-14 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS04140 819dbe47c6bbc9da65b6b206d8b2e478 738 SMART SM00248 674 703 2200.0 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS04140 819dbe47c6bbc9da65b6b206d8b2e478 738 SMART SM00248 464 493 3.4E-5 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS04140 819dbe47c6bbc9da65b6b206d8b2e478 738 SMART SM00248 529 559 6.1 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS04140 819dbe47c6bbc9da65b6b206d8b2e478 738 SMART SM00248 599 629 0.0083 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS04140 819dbe47c6bbc9da65b6b206d8b2e478 738 SMART SM00248 566 595 1.2E-4 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS04140 819dbe47c6bbc9da65b6b206d8b2e478 738 SMART SM00248 496 525 0.0037 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS04140 819dbe47c6bbc9da65b6b206d8b2e478 738 SMART SM00248 430 460 7.7E-4 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS04140 819dbe47c6bbc9da65b6b206d8b2e478 738 Gene3D G3DSA:1.25.40.20 433 630 2.0E-53 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS04140 819dbe47c6bbc9da65b6b206d8b2e478 738 Gene3D G3DSA:1.25.40.20 673 702 2.0E-53 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS04515 41ff47e0cc3cac5f31f3529324059c65 325 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 207 219 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 SD28_RS04515 41ff47e0cc3cac5f31f3529324059c65 325 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 82 96 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 SD28_RS04515 41ff47e0cc3cac5f31f3529324059c65 325 SUPERFAMILY SSF48576 2 324 2.34E-92 T 23-04-2016 IPR008949 Isoprenoid synthase domain SD28_RS04515 41ff47e0cc3cac5f31f3529324059c65 325 Pfam PF00348 Polyprenyl synthetase 33 277 3.4E-73 T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 SD28_RS04515 41ff47e0cc3cac5f31f3529324059c65 325 PANTHER PTHR12001:SF47 4 325 2.7E-108 T 23-04-2016 SD28_RS04515 41ff47e0cc3cac5f31f3529324059c65 325 Gene3D G3DSA:1.10.600.10 3 325 6.7E-99 T 23-04-2016 IPR008949 Isoprenoid synthase domain SD28_RS04515 41ff47e0cc3cac5f31f3529324059c65 325 PANTHER PTHR12001 4 325 2.7E-108 T 23-04-2016 IPR017446 Polyprenyl synthetase-related SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 PANTHER PTHR11946 1 205 0.0 T 23-04-2016 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 PANTHER PTHR11946 239 812 0.0 T 23-04-2016 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 PRINTS PR00985 Leucyl-tRNA synthetase signature 184 197 1.4E-52 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 PRINTS PR00985 Leucyl-tRNA synthetase signature 126 143 1.4E-52 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 PRINTS PR00985 Leucyl-tRNA synthetase signature 214 233 1.4E-52 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 1.4E-52 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 PRINTS PR00985 Leucyl-tRNA synthetase signature 487 505 1.4E-52 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 1.4E-52 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 PRINTS PR00985 Leucyl-tRNA synthetase signature 152 168 1.4E-52 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 Gene3D G3DSA:1.10.730.10 604 748 4.5E-37 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 4 571 1.7E-272 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 417 610 1.5E-24 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 170 3.6E-30 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 SUPERFAMILY SSF50677 225 415 1.78E-53 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 3 812 22.246 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 PANTHER PTHR11946:SF7 1 205 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 PANTHER PTHR11946:SF7 239 812 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 Gene3D G3DSA:3.40.50.620 2 221 3.5E-160 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 Gene3D G3DSA:3.40.50.620 425 603 3.5E-160 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 403 9.3E-77 T 23-04-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 SUPERFAMILY SSF52374 4 225 1.26E-151 T 23-04-2016 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 SUPERFAMILY SSF52374 416 623 1.26E-151 T 23-04-2016 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 Pfam PF08264 Anticodon-binding domain of tRNA 655 775 2.4E-15 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 Gene3D G3DSA:3.90.740.10 222 424 7.4E-58 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 SUPERFAMILY SSF47323 618 812 5.79E-29 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS05315 7d81671993d681ccffd0b89ad9276955 813 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 41 52 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 SUPERFAMILY SSF46977 462 597 9.94E-47 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 Gene3D G3DSA:1.20.58.100 462 565 1.5E-37 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 Pfam PF02910 Fumarate reductase flavoprotein C-term 469 597 6.3E-39 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 7 597 1.6E-271 T 23-04-2016 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 386 401 8.23E-5 T 23-04-2016 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 8.23E-5 T 23-04-2016 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 PANTHER PTHR11632:SF5 1 597 0.0 T 23-04-2016 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 Pfam PF00890 FAD binding domain 9 411 1.5E-122 T 23-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 SUPERFAMILY SSF51905 5 266 9.08E-80 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 SUPERFAMILY SSF51905 366 431 9.08E-80 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 PIRSF PIRSF000171 1 590 5.6E-46 T 23-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 SUPERFAMILY SSF56425 243 362 4.04E-44 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 Gene3D G3DSA:3.50.50.60 358 431 2.2E-121 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 Gene3D G3DSA:3.50.50.60 3 249 2.2E-121 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 Gene3D G3DSA:4.10.80.40 566 597 7.1E-18 T 23-04-2016 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 PANTHER PTHR11632 1 597 0.0 T 23-04-2016 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 23-04-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 597 4.2E-247 T 23-04-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 SD28_RS00865 d94fca2bf9cd6c09608f4b4be1310bb3 597 Gene3D G3DSA:3.90.700.10 250 357 1.1E-41 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain SD28_RS01090 30de8457c014be352037bc0e211a5f5b 117 Gene3D G3DSA:3.40.30.10 18 115 3.5E-29 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS01090 30de8457c014be352037bc0e211a5f5b 117 PANTHER PTHR11780:SF12 18 114 1.8E-35 T 23-04-2016 SD28_RS01090 30de8457c014be352037bc0e211a5f5b 117 SUPERFAMILY SSF52833 18 113 1.02E-24 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS01090 30de8457c014be352037bc0e211a5f5b 117 PANTHER PTHR11780 18 114 1.8E-35 T 23-04-2016 SD28_RS01090 30de8457c014be352037bc0e211a5f5b 117 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 18 100 7.8E-6 T 23-04-2016 SD28_RS01630 f8c3129f31b7ed2cfba3b507f18d7516 202 Pfam PF02527 rRNA small subunit methyltransferase G 23 182 8.6E-48 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 SD28_RS01630 f8c3129f31b7ed2cfba3b507f18d7516 202 PANTHER PTHR31760 4 202 7.8E-54 T 23-04-2016 SD28_RS01630 f8c3129f31b7ed2cfba3b507f18d7516 202 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 15 199 25.556 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 SD28_RS01630 f8c3129f31b7ed2cfba3b507f18d7516 202 PIRSF PIRSF003078 2 202 4.1E-49 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 SD28_RS01630 f8c3129f31b7ed2cfba3b507f18d7516 202 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 28 202 8.3E-49 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 SD28_RS01630 f8c3129f31b7ed2cfba3b507f18d7516 202 Gene3D G3DSA:3.40.50.150 6 202 1.2E-54 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS01630 f8c3129f31b7ed2cfba3b507f18d7516 202 SUPERFAMILY SSF53335 5 174 2.03E-34 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS01630 f8c3129f31b7ed2cfba3b507f18d7516 202 PANTHER PTHR31760:SF0 4 202 7.8E-54 T 23-04-2016 SD28_RS01000 2b23009870b87b59f62c14eb5b7c9f72 200 SUPERFAMILY SSF63380 94 196 6.21E-28 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 SD28_RS01000 2b23009870b87b59f62c14eb5b7c9f72 200 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 197 6.4E-55 T 23-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 SD28_RS01000 2b23009870b87b59f62c14eb5b7c9f72 200 Pfam PF00677 Lumazine binding domain 3 86 9.8E-19 T 23-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 SD28_RS01000 2b23009870b87b59f62c14eb5b7c9f72 200 Pfam PF00677 Lumazine binding domain 100 184 8.9E-18 T 23-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 SD28_RS01000 2b23009870b87b59f62c14eb5b7c9f72 200 Gene3D G3DSA:2.40.30.20 5 104 7.1E-25 T 23-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS01000 2b23009870b87b59f62c14eb5b7c9f72 200 Gene3D G3DSA:2.40.30.20 105 195 7.6E-25 T 23-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS01000 2b23009870b87b59f62c14eb5b7c9f72 200 PIRSF PIRSF000498 1 200 4.6E-61 T 23-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 SD28_RS01000 2b23009870b87b59f62c14eb5b7c9f72 200 PANTHER PTHR21098 1 198 2.1E-66 T 23-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 SD28_RS01000 2b23009870b87b59f62c14eb5b7c9f72 200 SUPERFAMILY SSF63380 1 92 3.83E-20 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 SD28_RS00570 2af82db851bb1f19681de3d1f00ae80d 78 Gene3D G3DSA:2.30.170.40 2 77 1.4E-34 T 23-04-2016 SD28_RS00570 2af82db851bb1f19681de3d1f00ae80d 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 1.7E-26 T 23-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS00570 2af82db851bb1f19681de3d1f00ae80d 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 71 20.73 T 23-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS00570 2af82db851bb1f19681de3d1f00ae80d 78 Pfam PF00830 Ribosomal L28 family 3 62 5.3E-26 T 23-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 SD28_RS00570 2af82db851bb1f19681de3d1f00ae80d 78 PANTHER PTHR13528 1 70 2.2E-33 T 23-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 SD28_RS00570 2af82db851bb1f19681de3d1f00ae80d 78 SUPERFAMILY SSF143800 2 77 1.22E-29 T 23-04-2016 SD28_RS05215 88ef5162f141476a0162beef27f8ae5a 182 Pfam PF01081 KDPG and KHG aldolase 5 181 1.6E-48 T 23-04-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 SD28_RS05215 88ef5162f141476a0162beef27f8ae5a 182 Gene3D G3DSA:3.20.20.70 2 182 1.1E-54 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS05215 88ef5162f141476a0162beef27f8ae5a 182 PANTHER PTHR30246:SF0 1 179 5.2E-55 T 23-04-2016 SD28_RS05215 88ef5162f141476a0162beef27f8ae5a 182 SUPERFAMILY SSF51569 2 181 4.76E-48 T 23-04-2016 SD28_RS05215 88ef5162f141476a0162beef27f8ae5a 182 PANTHER PTHR30246 1 179 5.2E-55 T 23-04-2016 SD28_RS05215 88ef5162f141476a0162beef27f8ae5a 182 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 5 181 4.6E-54 T 23-04-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 SD28_RS00560 f4e9622a6e184c621bf980423cdd4082 678 Pfam PF01336 OB-fold nucleic acid binding domain 56 126 2.7E-8 T 23-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 SD28_RS00560 f4e9622a6e184c621bf980423cdd4082 678 SMART SM00487 249 444 1.6E-29 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain SD28_RS00560 f4e9622a6e184c621bf980423cdd4082 678 Pfam PF00270 DEAD/DEAH box helicase 254 419 8.4E-17 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SD28_RS00560 f4e9622a6e184c621bf980423cdd4082 678 Pfam PF00271 Helicase conserved C-terminal domain 455 573 1.7E-19 T 23-04-2016 IPR001650 Helicase, C-terminal SD28_RS00560 f4e9622a6e184c621bf980423cdd4082 678 SUPERFAMILY SSF52540 301 585 6.37E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00560 f4e9622a6e184c621bf980423cdd4082 678 SMART SM00490 490 574 3.2E-20 T 23-04-2016 IPR001650 Helicase, C-terminal SD28_RS00560 f4e9622a6e184c621bf980423cdd4082 678 PANTHER PTHR14025 242 627 1.7E-104 T 23-04-2016 SD28_RS00560 f4e9622a6e184c621bf980423cdd4082 678 PANTHER PTHR14025:SF21 242 627 1.7E-104 T 23-04-2016 SD28_RS00560 f4e9622a6e184c621bf980423cdd4082 678 Gene3D G3DSA:3.40.50.300 238 438 8.0E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00560 f4e9622a6e184c621bf980423cdd4082 678 Gene3D G3DSA:2.40.50.140 42 131 2.8E-12 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS00560 f4e9622a6e184c621bf980423cdd4082 678 SUPERFAMILY SSF50249 8 160 3.83E-15 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS00560 f4e9622a6e184c621bf980423cdd4082 678 Gene3D G3DSA:3.40.50.300 439 623 2.2E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05160 64b76460399c31ebfc27f8556a91ff90 344 SUPERFAMILY SSF51556 6 341 2.04E-62 T 23-04-2016 IPR032466 Metal-dependent hydrolase SD28_RS05160 64b76460399c31ebfc27f8556a91ff90 344 Gene3D G3DSA:3.20.20.140 6 339 5.0E-90 T 23-04-2016 SD28_RS05160 64b76460399c31ebfc27f8556a91ff90 344 Pfam PF00962 Adenosine/AMP deaminase 9 337 5.6E-58 T 23-04-2016 IPR001365 Adenosine/AMP deaminase domain GO:0019239 SD28_RS05160 64b76460399c31ebfc27f8556a91ff90 344 PANTHER PTHR11409:SF43 1 342 1.2E-88 T 23-04-2016 SD28_RS05160 64b76460399c31ebfc27f8556a91ff90 344 PANTHER PTHR11409 1 342 1.2E-88 T 23-04-2016 SD28_RS05160 64b76460399c31ebfc27f8556a91ff90 344 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 10 338 9.0E-69 T 23-04-2016 IPR006330 Adenosine/adenine deaminase GO:0019239 SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 Gene3D G3DSA:4.10.860.10 627 666 1.0E-12 T 23-04-2016 IPR001943 UVR domain GO:0005515 SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 664 42.066 T 23-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 Pfam PF02151 UvrB/uvrC motif 630 663 2.6E-7 T 23-04-2016 IPR001943 UVR domain GO:0005515 SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 Gene3D G3DSA:3.30.2060.10 160 237 2.9E-11 T 23-04-2016 SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 Pfam PF04851 Type III restriction enzyme, res subunit 15 137 1.6E-10 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 SUPERFAMILY SSF46600 624 665 3.01E-10 T 23-04-2016 IPR001943 UVR domain GO:0005515 SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 PANTHER PTHR24029 1 668 0.0 T 23-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 Pfam PF00271 Helicase conserved C-terminal domain 434 543 6.1E-18 T 23-04-2016 IPR001650 Helicase, C-terminal SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 Gene3D G3DSA:3.40.50.300 424 575 2.9E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 Gene3D G3DSA:3.40.50.300 249 337 1.3E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 Gene3D G3DSA:3.40.50.300 5 159 1.7E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 Gene3D G3DSA:3.40.50.300 387 408 1.3E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 SUPERFAMILY SSF52540 33 81 2.95E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 SUPERFAMILY SSF52540 457 569 2.95E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 SMART SM00490 458 544 3.7E-17 T 23-04-2016 IPR001650 Helicase, C-terminal SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 SUPERFAMILY SSF52540 2 413 3.27E-136 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 3 662 0.0 T 23-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 SMART SM00487 8 424 2.9E-27 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain SD28_RS04305 7924c981dd3abb56aaab71d8510c57b9 668 Pfam PF12344 Ultra-violet resistance protein B 550 591 6.5E-21 T 23-04-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain SD28_RS01145 7f1ae0f40d069d4784fd77e82dd1f0dc 616 PANTHER PTHR11785:SF125 515 530 6.4E-138 T 23-04-2016 SD28_RS01145 7f1ae0f40d069d4784fd77e82dd1f0dc 616 PANTHER PTHR11785:SF125 29 480 6.4E-138 T 23-04-2016 SD28_RS01145 7f1ae0f40d069d4784fd77e82dd1f0dc 616 PANTHER PTHR11785 515 530 6.4E-138 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS01145 7f1ae0f40d069d4784fd77e82dd1f0dc 616 PANTHER PTHR11785 29 480 6.4E-138 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS01145 7f1ae0f40d069d4784fd77e82dd1f0dc 616 Pfam PF13520 Amino acid permease 37 446 1.5E-31 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 149 156 - T 23-04-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 230 247 1.0E-32 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 1.0E-32 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 266 281 1.0E-32 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 145 163 1.0E-32 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 172 188 1.0E-32 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 SMART SM00846 1 151 1.1E-87 T 23-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 Gene3D G3DSA:3.30.360.10 159 315 1.2E-64 T 23-04-2016 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 PANTHER PTHR10836 1 330 3.3E-192 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 Gene3D G3DSA:3.40.50.720 1 158 7.2E-70 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 156 313 3.3E-58 T 23-04-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 PIRSF PIRSF000149 1 333 2.2E-116 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 1 151 7.3E-56 T 23-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 2 325 1.9E-129 T 23-04-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 PANTHER PTHR10836:SF57 1 330 3.3E-192 T 23-04-2016 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 SUPERFAMILY SSF55347 151 314 1.07E-61 T 23-04-2016 SD28_RS06070 458d7a6e803444c8c12ef9aa1f6c7be9 333 SUPERFAMILY SSF51735 1 165 8.16E-57 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS02385 5786a0f49c83a68ce9039d0d9c289eec 178 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 177 2.8E-70 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS02385 5786a0f49c83a68ce9039d0d9c289eec 178 Gene3D G3DSA:3.90.930.12 84 178 7.2E-39 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS02385 5786a0f49c83a68ce9039d0d9c289eec 178 SUPERFAMILY SSF56053 84 178 1.03E-34 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS02385 5786a0f49c83a68ce9039d0d9c289eec 178 PIRSF PIRSF002162 1 178 8.0E-45 T 23-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS02385 5786a0f49c83a68ce9039d0d9c289eec 178 PRINTS PR00059 Ribosomal protein L6 signature 72 97 1.1E-32 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS02385 5786a0f49c83a68ce9039d0d9c289eec 178 PRINTS PR00059 Ribosomal protein L6 signature 100 116 1.1E-32 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS02385 5786a0f49c83a68ce9039d0d9c289eec 178 PRINTS PR00059 Ribosomal protein L6 signature 142 163 1.1E-32 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS02385 5786a0f49c83a68ce9039d0d9c289eec 178 SUPERFAMILY SSF56053 1 83 3.93E-20 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS02385 5786a0f49c83a68ce9039d0d9c289eec 178 Gene3D G3DSA:3.90.930.12 2 83 1.8E-25 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS02385 5786a0f49c83a68ce9039d0d9c289eec 178 PANTHER PTHR11655 1 177 2.1E-76 T 23-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS02385 5786a0f49c83a68ce9039d0d9c289eec 178 PANTHER PTHR11655:SF14 1 177 2.1E-76 T 23-04-2016 SD28_RS02385 5786a0f49c83a68ce9039d0d9c289eec 178 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 155 163 - T 23-04-2016 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02385 5786a0f49c83a68ce9039d0d9c289eec 178 Pfam PF00347 Ribosomal protein L6 91 165 1.7E-18 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS02385 5786a0f49c83a68ce9039d0d9c289eec 178 Pfam PF00347 Ribosomal protein L6 11 83 6.5E-13 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS02385 5786a0f49c83a68ce9039d0d9c289eec 178 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 177 35.994 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS06470 077c456f1220027c8ce4e043ab751a41 369 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 9 144 2.4E-36 T 23-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS06470 077c456f1220027c8ce4e043ab751a41 369 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 193 356 1.6E-36 T 23-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS06470 077c456f1220027c8ce4e043ab751a41 369 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 5 364 3.1E-101 T 23-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS06470 077c456f1220027c8ce4e043ab751a41 369 PANTHER PTHR21015 8 369 1.8E-112 T 23-04-2016 SD28_RS06470 077c456f1220027c8ce4e043ab751a41 369 PANTHER PTHR21015:SF22 8 369 1.8E-112 T 23-04-2016 SD28_RS06470 077c456f1220027c8ce4e043ab751a41 369 Gene3D G3DSA:3.40.50.2000 5 205 8.5E-65 T 23-04-2016 SD28_RS06470 077c456f1220027c8ce4e043ab751a41 369 Gene3D G3DSA:3.40.50.2000 266 338 3.4E-7 T 23-04-2016 SD28_RS06470 077c456f1220027c8ce4e043ab751a41 369 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 9 368 34.788 T 23-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS06470 077c456f1220027c8ce4e043ab751a41 369 SUPERFAMILY SSF53756 7 367 2.03E-107 T 23-04-2016 SD28_RS03620 1b3b0a196d97253292f5bb8ea9802201 254 Gene3D G3DSA:3.20.20.190 6 245 1.1E-42 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 SD28_RS03620 1b3b0a196d97253292f5bb8ea9802201 254 PANTHER PTHR23344 7 242 1.5E-32 T 23-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 SD28_RS03620 1b3b0a196d97253292f5bb8ea9802201 254 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 9 242 1.8E-28 T 23-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 SD28_RS03620 1b3b0a196d97253292f5bb8ea9802201 254 SUPERFAMILY SSF51695 6 241 4.19E-45 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 SD28_RS03620 1b3b0a196d97253292f5bb8ea9802201 254 PANTHER PTHR23344:SF20 7 242 1.5E-32 T 23-04-2016 SD28_RS00965 08fdcf89f5c2266a26f9497f8a972898 276 Gene3D G3DSA:3.40.50.620 144 274 8.7E-25 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS00965 08fdcf89f5c2266a26f9497f8a972898 276 PRINTS PR01438 Universal stress protein signature 114 136 1.2E-13 T 23-04-2016 IPR006015 Universal stress protein A SD28_RS00965 08fdcf89f5c2266a26f9497f8a972898 276 PRINTS PR01438 Universal stress protein signature 3 21 1.2E-13 T 23-04-2016 IPR006015 Universal stress protein A SD28_RS00965 08fdcf89f5c2266a26f9497f8a972898 276 PRINTS PR01438 Universal stress protein signature 97 109 1.2E-13 T 23-04-2016 IPR006015 Universal stress protein A SD28_RS00965 08fdcf89f5c2266a26f9497f8a972898 276 Gene3D G3DSA:3.40.50.620 2 136 5.0E-30 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS00965 08fdcf89f5c2266a26f9497f8a972898 276 PANTHER PTHR31964 1 160 9.7E-23 T 23-04-2016 SD28_RS00965 08fdcf89f5c2266a26f9497f8a972898 276 Pfam PF00582 Universal stress protein family 3 136 7.4E-25 T 23-04-2016 IPR006016 UspA GO:0006950 SD28_RS00965 08fdcf89f5c2266a26f9497f8a972898 276 Pfam PF00582 Universal stress protein family 148 274 8.6E-18 T 23-04-2016 IPR006016 UspA GO:0006950 SD28_RS00965 08fdcf89f5c2266a26f9497f8a972898 276 SUPERFAMILY SSF52402 148 274 5.11E-24 T 23-04-2016 SD28_RS00965 08fdcf89f5c2266a26f9497f8a972898 276 SUPERFAMILY SSF52402 3 136 4.6E-27 T 23-04-2016 SD28_RS00965 08fdcf89f5c2266a26f9497f8a972898 276 PANTHER PTHR31964:SF45 1 160 9.7E-23 T 23-04-2016 SD28_RS00895 2829e132a78bf299eef5d5fc341b2685 109 SUPERFAMILY SSF52833 8 107 1.04E-33 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS00895 2829e132a78bf299eef5d5fc341b2685 109 PIRSF PIRSF005894 3 109 3.4E-48 T 23-04-2016 IPR014434 Monothiol glutaredoxin SD28_RS00895 2829e132a78bf299eef5d5fc341b2685 109 Pfam PF00462 Glutaredoxin 22 86 3.7E-17 T 23-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 SD28_RS00895 2829e132a78bf299eef5d5fc341b2685 109 PANTHER PTHR10293 11 108 5.6E-55 T 23-04-2016 IPR004480 Monothiol glutaredoxin-related SD28_RS00895 2829e132a78bf299eef5d5fc341b2685 109 Gene3D G3DSA:3.40.30.10 12 106 6.0E-32 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS00895 2829e132a78bf299eef5d5fc341b2685 109 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 10 106 2.9E-46 T 23-04-2016 IPR004480 Monothiol glutaredoxin-related SD28_RS01060 31a627ce85532012182d7da7c6c18962 151 Gene3D G3DSA:1.10.10.10 53 94 7.8E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS01060 31a627ce85532012182d7da7c6c18962 151 Gene3D G3DSA:1.10.10.10 100 148 3.9E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS01060 31a627ce85532012182d7da7c6c18962 151 Gene3D G3DSA:1.10.10.10 7 51 5.5E-7 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS01060 31a627ce85532012182d7da7c6c18962 151 Pfam PF02631 RecX family 32 148 4.5E-24 T 23-04-2016 IPR003783 Regulatory protein RecX GO:0006282 SD28_RS01060 31a627ce85532012182d7da7c6c18962 151 Hamap MF_01114 Regulatory protein RecX [recX]. 4 150 11.995 T 23-04-2016 IPR003783 Regulatory protein RecX GO:0006282 SD28_RS01060 31a627ce85532012182d7da7c6c18962 151 PANTHER PTHR33602 13 147 2.0E-18 T 23-04-2016 SD28_RS01060 31a627ce85532012182d7da7c6c18962 151 PANTHER PTHR33602:SF1 13 147 2.0E-18 T 23-04-2016 SD28_RS02990 8a00169afea012ee663314a3b89fd5c0 407 SUPERFAMILY SSF48403 117 288 2.49E-38 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS02990 8a00169afea012ee663314a3b89fd5c0 407 Pfam PF13637 Ankyrin repeats (many copies) 135 186 4.4E-5 T 23-04-2016 SD28_RS02990 8a00169afea012ee663314a3b89fd5c0 407 PANTHER PTHR24198 22 28 6.6E-41 T 23-04-2016 SD28_RS02990 8a00169afea012ee663314a3b89fd5c0 407 PANTHER PTHR24198 133 289 6.6E-41 T 23-04-2016 SD28_RS02990 8a00169afea012ee663314a3b89fd5c0 407 Pfam PF12796 Ankyrin repeats (3 copies) 194 264 1.0E-12 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS02990 8a00169afea012ee663314a3b89fd5c0 407 SUPERFAMILY SSF48403 253 370 3.54E-5 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS02990 8a00169afea012ee663314a3b89fd5c0 407 SMART SM00248 165 195 0.25 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS02990 8a00169afea012ee663314a3b89fd5c0 407 SMART SM00248 233 263 7.7E-4 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS02990 8a00169afea012ee663314a3b89fd5c0 407 SMART SM00248 199 229 0.0048 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS02990 8a00169afea012ee663314a3b89fd5c0 407 SMART SM00248 132 162 0.43 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS02990 8a00169afea012ee663314a3b89fd5c0 407 SMART SM00248 342 371 840.0 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS02990 8a00169afea012ee663314a3b89fd5c0 407 SMART SM00248 266 296 0.064 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS02990 8a00169afea012ee663314a3b89fd5c0 407 Pfam PF00023 Ankyrin repeat 267 292 0.013 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS02990 8a00169afea012ee663314a3b89fd5c0 407 Gene3D G3DSA:1.25.40.20 135 291 5.2E-43 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS02990 8a00169afea012ee663314a3b89fd5c0 407 Gene3D G3DSA:1.25.40.20 333 365 5.2E-43 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS00415 22b65ea3508f2b4f3c43083ee07d9755 607 PANTHER PTHR24221 21 603 5.9E-201 T 23-04-2016 SD28_RS00415 22b65ea3508f2b4f3c43083ee07d9755 607 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 31 603 1.8E-198 T 23-04-2016 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 SD28_RS00415 22b65ea3508f2b4f3c43083ee07d9755 607 Gene3D G3DSA:1.20.1560.10 32 355 1.5E-63 T 23-04-2016 SD28_RS00415 22b65ea3508f2b4f3c43083ee07d9755 607 SUPERFAMILY SSF52540 362 604 1.36E-88 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00415 22b65ea3508f2b4f3c43083ee07d9755 607 Pfam PF00664 ABC transporter transmembrane region 48 318 5.4E-45 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 SD28_RS00415 22b65ea3508f2b4f3c43083ee07d9755 607 ProSitePatterns PS00211 ABC transporters family signature. 507 521 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS00415 22b65ea3508f2b4f3c43083ee07d9755 607 SUPERFAMILY SSF90123 32 355 6.15E-65 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 SD28_RS00415 22b65ea3508f2b4f3c43083ee07d9755 607 Gene3D G3DSA:3.40.50.300 370 599 6.8E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00415 22b65ea3508f2b4f3c43083ee07d9755 607 Pfam PF00005 ABC transporter 385 535 6.5E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS00415 22b65ea3508f2b4f3c43083ee07d9755 607 SMART SM00382 394 581 1.4E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS01075 e1cdac22e69e0d5851639c77992474b7 139 Gene3D G3DSA:3.40.250.10 22 136 1.1E-22 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS01075 e1cdac22e69e0d5851639c77992474b7 139 PANTHER PTHR12231:SF138 49 135 1.3E-13 T 23-04-2016 SD28_RS01075 e1cdac22e69e0d5851639c77992474b7 139 SMART SM00450 40 134 2.5E-15 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS01075 e1cdac22e69e0d5851639c77992474b7 139 PANTHER PTHR12231 49 135 1.3E-13 T 23-04-2016 SD28_RS01075 e1cdac22e69e0d5851639c77992474b7 139 SUPERFAMILY SSF52821 19 135 1.7E-24 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS01075 e1cdac22e69e0d5851639c77992474b7 139 Pfam PF00581 Rhodanese-like domain 42 130 5.6E-15 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS05015 5f403d6e089b860796596ede66298492 254 Pfam PF13462 Thioredoxin 78 223 1.0E-13 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS05015 5f403d6e089b860796596ede66298492 254 SUPERFAMILY SSF52833 68 250 8.64E-27 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS05015 5f403d6e089b860796596ede66298492 254 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 2 62 1.5E-6 T 23-04-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 SD28_RS05015 5f403d6e089b860796596ede66298492 254 PANTHER PTHR13887 49 223 1.4E-17 T 23-04-2016 SD28_RS05015 5f403d6e089b860796596ede66298492 254 Gene3D G3DSA:1.10.287.460 16 66 8.3E-8 T 23-04-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 SD28_RS05015 5f403d6e089b860796596ede66298492 254 PANTHER PTHR13887:SF25 49 223 1.4E-17 T 23-04-2016 SD28_RS05015 5f403d6e089b860796596ede66298492 254 Gene3D G3DSA:3.40.30.10 68 253 1.9E-30 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS06925 a7defa1af7124527999d1c577ceff9bd 228 PANTHER PTHR26402 1 219 5.4E-78 T 23-04-2016 SD28_RS06925 a7defa1af7124527999d1c577ceff9bd 228 Gene3D G3DSA:3.40.50.2300 1 119 1.2E-32 T 23-04-2016 SD28_RS06925 a7defa1af7124527999d1c577ceff9bd 228 SUPERFAMILY SSF52172 1 118 5.41E-35 T 23-04-2016 IPR011006 CheY-like superfamily SD28_RS06925 a7defa1af7124527999d1c577ceff9bd 228 PANTHER PTHR26402:SF518 1 219 5.4E-78 T 23-04-2016 SD28_RS06925 a7defa1af7124527999d1c577ceff9bd 228 Gene3D G3DSA:1.10.10.10 128 221 2.3E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS06925 a7defa1af7124527999d1c577ceff9bd 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 220 1.8E-22 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SD28_RS06925 a7defa1af7124527999d1c577ceff9bd 228 SMART SM00862 149 221 2.9E-21 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SD28_RS06925 a7defa1af7124527999d1c577ceff9bd 228 SMART SM00448 1 112 2.1E-34 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 SD28_RS06925 a7defa1af7124527999d1c577ceff9bd 228 SUPERFAMILY SSF46894 124 221 2.21E-25 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SD28_RS06925 a7defa1af7124527999d1c577ceff9bd 228 Pfam PF00072 Response regulator receiver domain 4 113 5.1E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 SD28_RS04015 5ef5abd04565ed1e7b12aa42c05de814 191 SUPERFAMILY SSF51064 135 190 1.24E-19 T 23-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 SD28_RS04015 5ef5abd04565ed1e7b12aa42c05de814 191 ProSitePatterns PS01071 grpE protein signature. 145 188 - T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 SD28_RS04015 5ef5abd04565ed1e7b12aa42c05de814 191 PANTHER PTHR21237 33 191 7.2E-57 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 SD28_RS04015 5ef5abd04565ed1e7b12aa42c05de814 191 Gene3D G3DSA:2.30.22.10 134 191 3.4E-26 T 23-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 SD28_RS04015 5ef5abd04565ed1e7b12aa42c05de814 191 Hamap MF_01151 Protein GrpE [grpE]. 2 190 20.97 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 SD28_RS04015 5ef5abd04565ed1e7b12aa42c05de814 191 Gene3D G3DSA:3.90.20.20 34 133 5.1E-27 T 23-04-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil SD28_RS04015 5ef5abd04565ed1e7b12aa42c05de814 191 SUPERFAMILY SSF58014 38 134 5.36E-23 T 23-04-2016 SD28_RS04015 5ef5abd04565ed1e7b12aa42c05de814 191 Pfam PF01025 GrpE 35 190 8.7E-50 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 SD28_RS04015 5ef5abd04565ed1e7b12aa42c05de814 191 PRINTS PR00773 GrpE protein signature 60 76 1.2E-28 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 SD28_RS04015 5ef5abd04565ed1e7b12aa42c05de814 191 PRINTS PR00773 GrpE protein signature 88 103 1.2E-28 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 SD28_RS04015 5ef5abd04565ed1e7b12aa42c05de814 191 PRINTS PR00773 GrpE protein signature 169 188 1.2E-28 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 SD28_RS04015 5ef5abd04565ed1e7b12aa42c05de814 191 PRINTS PR00773 GrpE protein signature 142 157 1.2E-28 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 SD28_RS02515 af67ec0d38b1dfdf52e54819ce6e159f 739 PANTHER PTHR11070:SF7 528 654 3.9E-200 T 23-04-2016 SD28_RS02515 af67ec0d38b1dfdf52e54819ce6e159f 739 PANTHER PTHR11070:SF7 7 512 3.9E-200 T 23-04-2016 SD28_RS02515 af67ec0d38b1dfdf52e54819ce6e159f 739 SUPERFAMILY SSF52540 4 653 7.48E-164 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02515 af67ec0d38b1dfdf52e54819ce6e159f 739 Gene3D G3DSA:3.40.50.300 551 653 5.3E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02515 af67ec0d38b1dfdf52e54819ce6e159f 739 Gene3D G3DSA:3.40.50.300 283 384 5.3E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02515 af67ec0d38b1dfdf52e54819ce6e159f 739 PANTHER PTHR11070 528 654 3.9E-200 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 SD28_RS02515 af67ec0d38b1dfdf52e54819ce6e159f 739 PANTHER PTHR11070 7 512 3.9E-200 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 SD28_RS02515 af67ec0d38b1dfdf52e54819ce6e159f 739 Gene3D G3DSA:3.40.50.300 4 110 2.9E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02515 af67ec0d38b1dfdf52e54819ce6e159f 739 Gene3D G3DSA:3.40.50.300 188 282 2.9E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02515 af67ec0d38b1dfdf52e54819ce6e159f 739 Pfam PF13361 UvrD-like helicase C-terminal domain 274 627 1.6E-73 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 SD28_RS02515 af67ec0d38b1dfdf52e54819ce6e159f 739 Gene3D G3DSA:1.10.10.160 114 187 1.4E-16 T 23-04-2016 IPR013986 DExx box DNA helicase domain SD28_RS02515 af67ec0d38b1dfdf52e54819ce6e159f 739 Gene3D G3DSA:1.10.486.10 385 539 1.2E-44 T 23-04-2016 SD28_RS02515 af67ec0d38b1dfdf52e54819ce6e159f 739 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 266 4.0E-73 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 SD28_RS06480 0d525a2ee9eefd5791a0859da79367fc 200 TIGRFAM TIGR00615 recR: recombination protein RecR 6 197 2.1E-69 T 23-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 SD28_RS06480 0d525a2ee9eefd5791a0859da79367fc 200 SUPERFAMILY SSF111304 6 200 2.48E-66 T 23-04-2016 IPR023627 Recombination protein RecR SD28_RS06480 0d525a2ee9eefd5791a0859da79367fc 200 PANTHER PTHR30446:SF0 4 200 1.4E-87 T 23-04-2016 SD28_RS06480 0d525a2ee9eefd5791a0859da79367fc 200 Pfam PF13662 Toprim domain 83 172 3.2E-19 T 23-04-2016 IPR006171 Toprim domain SD28_RS06480 0d525a2ee9eefd5791a0859da79367fc 200 Pfam PF02132 RecR protein 44 81 4.9E-12 T 23-04-2016 IPR023628 Recombination protein RecR, C4-type zinc finger SD28_RS06480 0d525a2ee9eefd5791a0859da79367fc 200 Hamap MF_00017 Recombination protein RecR [recR]. 1 200 78.801 T 23-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 SD28_RS06480 0d525a2ee9eefd5791a0859da79367fc 200 PANTHER PTHR30446 4 200 1.4E-87 T 23-04-2016 SD28_RS06480 0d525a2ee9eefd5791a0859da79367fc 200 SMART SM00493 83 168 3.4E-5 T 23-04-2016 IPR006171 Toprim domain SD28_RS06480 0d525a2ee9eefd5791a0859da79367fc 200 ProSitePatterns PS01300 RecR protein signature. 60 81 - T 23-04-2016 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 SD28_RS02730 d34d8a4332ec30cfb15eb3376eafa6ed 1623 SUPERFAMILY SSF54001 1424 1586 7.85E-9 T 23-04-2016 SD28_RS02730 d34d8a4332ec30cfb15eb3376eafa6ed 1623 Gene3D G3DSA:3.30.310.130 1485 1565 3.2E-7 T 23-04-2016 SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 3 119 1.9E-37 T 23-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 SUPERFAMILY SSF51735 121 277 1.74E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 254 272 4.7E-79 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 237 253 4.7E-79 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 32 54 4.7E-79 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 203 232 4.7E-79 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 4.7E-79 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 108 129 4.7E-79 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 73 100 4.7E-79 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 258 266 - T 23-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 PANTHER PTHR10025 2 283 4.3E-146 T 23-04-2016 SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 122 280 6.4E-69 T 23-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 SUPERFAMILY SSF53223 2 120 1.34E-37 T 23-04-2016 SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 Hamap MF_01576 Bifunctional protein FolD [folD]. 1 281 38.227 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 74 99 - T 23-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 Gene3D G3DSA:3.40.50.720 139 262 7.3E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS00050 cbe9ac3481733dcf65817d0de21c31b8 292 Gene3D G3DSA:3.40.192.10 6 138 1.9E-46 T 23-04-2016 SD28_RS07420 8f9ebd6a8e5912e9ff1c6928684ddeeb 272 PANTHER PTHR24322:SF363 8 132 4.2E-38 T 23-04-2016 SD28_RS07420 8f9ebd6a8e5912e9ff1c6928684ddeeb 272 PANTHER PTHR24322:SF363 148 180 4.2E-38 T 23-04-2016 SD28_RS07420 8f9ebd6a8e5912e9ff1c6928684ddeeb 272 Pfam PF00106 short chain dehydrogenase 5 191 1.8E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS07420 8f9ebd6a8e5912e9ff1c6928684ddeeb 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 3.1E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS07420 8f9ebd6a8e5912e9ff1c6928684ddeeb 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 3.1E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS07420 8f9ebd6a8e5912e9ff1c6928684ddeeb 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 3.1E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS07420 8f9ebd6a8e5912e9ff1c6928684ddeeb 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 3.1E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS07420 8f9ebd6a8e5912e9ff1c6928684ddeeb 272 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 SD28_RS07420 8f9ebd6a8e5912e9ff1c6928684ddeeb 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 5.4E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS07420 8f9ebd6a8e5912e9ff1c6928684ddeeb 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 5.4E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS07420 8f9ebd6a8e5912e9ff1c6928684ddeeb 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 5.4E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS07420 8f9ebd6a8e5912e9ff1c6928684ddeeb 272 Gene3D G3DSA:3.40.50.720 6 270 4.2E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS07420 8f9ebd6a8e5912e9ff1c6928684ddeeb 272 PANTHER PTHR24322 8 132 4.2E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS07420 8f9ebd6a8e5912e9ff1c6928684ddeeb 272 PANTHER PTHR24322 148 180 4.2E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS07420 8f9ebd6a8e5912e9ff1c6928684ddeeb 272 SUPERFAMILY SSF51735 4 251 4.62E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS03665 08f78bac246863ef82c6b463b93a9c96 201 PANTHER PTHR30309 1 201 7.8E-70 T 23-04-2016 SD28_RS03665 08f78bac246863ef82c6b463b93a9c96 201 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 185 1.8E-47 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 SD28_RS03665 08f78bac246863ef82c6b463b93a9c96 201 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 7 194 19.612 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 SD28_RS03665 08f78bac246863ef82c6b463b93a9c96 201 SMART SM01207 10 186 3.0E-74 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 SD28_RS03665 08f78bac246863ef82c6b463b93a9c96 201 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 3 195 1.5E-58 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 SD28_RS03665 08f78bac246863ef82c6b463b93a9c96 201 PANTHER PTHR30309:SF0 1 201 7.8E-70 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 SD28_RS03825 11d94675fc41324dbab961fc4f1b31b3 305 PIRSF PIRSF005651 1 298 2.3E-90 T 23-04-2016 IPR010200 HflC GO:0016021|GO:0052547 SD28_RS03825 11d94675fc41324dbab961fc4f1b31b3 305 SUPERFAMILY SSF117892 58 195 5.62E-25 T 23-04-2016 IPR001107 Band 7 domain SD28_RS03825 11d94675fc41324dbab961fc4f1b31b3 305 PANTHER PTHR10264:SF80 7 287 1.9E-73 T 23-04-2016 SD28_RS03825 11d94675fc41324dbab961fc4f1b31b3 305 PANTHER PTHR10264 7 287 1.9E-73 T 23-04-2016 IPR001972 Stomatin family GO:0016020 SD28_RS03825 11d94675fc41324dbab961fc4f1b31b3 305 Pfam PF01145 SPFH domain / Band 7 family 25 206 2.8E-29 T 23-04-2016 IPR001107 Band 7 domain SD28_RS03825 11d94675fc41324dbab961fc4f1b31b3 305 SMART SM00244 21 189 9.1E-34 T 23-04-2016 IPR001107 Band 7 domain SD28_RS07205 4b39260fd20012447d561a8051c70147 401 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 342 366 - T 23-04-2016 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 SD28_RS07205 4b39260fd20012447d561a8051c70147 401 PANTHER PTHR30474 5 386 4.4E-146 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 SD28_RS07205 4b39260fd20012447d561a8051c70147 401 PANTHER PTHR30474:SF2 5 386 4.4E-146 T 23-04-2016 SD28_RS07205 4b39260fd20012447d561a8051c70147 401 Hamap MF_00913 Putative lipid II flippase FtsW [ftsW]. 24 392 38.589 T 23-04-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 SD28_RS07205 4b39260fd20012447d561a8051c70147 401 Pfam PF01098 Cell cycle protein 29 384 2.3E-101 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 SD28_RS07205 4b39260fd20012447d561a8051c70147 401 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 27 383 2.3E-126 T 23-04-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 SD28_RS06920 1e987f5ef3104e127b7937746ca606a0 284 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 71 268 1.4E-50 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 SD28_RS06920 1e987f5ef3104e127b7937746ca606a0 284 Gene3D G3DSA:2.10.109.10 82 159 5.0E-55 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain SD28_RS06920 1e987f5ef3104e127b7937746ca606a0 284 Gene3D G3DSA:2.10.109.10 228 277 5.0E-55 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain SD28_RS06920 1e987f5ef3104e127b7937746ca606a0 284 ProSitePatterns PS00761 Signal peptidases I signature 3. 233 246 - T 23-04-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 SD28_RS06920 1e987f5ef3104e127b7937746ca606a0 284 ProSitePatterns PS00760 Signal peptidases I lysine active site. 151 163 - T 23-04-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 SD28_RS06920 1e987f5ef3104e127b7937746ca606a0 284 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 228 247 4.0E-22 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 SD28_RS06920 1e987f5ef3104e127b7937746ca606a0 284 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 85 101 4.0E-22 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 SD28_RS06920 1e987f5ef3104e127b7937746ca606a0 284 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 149 161 4.0E-22 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 SD28_RS06920 1e987f5ef3104e127b7937746ca606a0 284 Pfam PF00717 Peptidase S24-like 92 173 5.0E-20 T 23-04-2016 IPR019759 Peptidase S24/S26A/S26B SD28_RS06920 1e987f5ef3104e127b7937746ca606a0 284 SUPERFAMILY SSF51306 83 282 3.24E-66 T 23-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C SD28_RS06920 1e987f5ef3104e127b7937746ca606a0 284 PANTHER PTHR12383:SF27 7 270 2.3E-80 T 23-04-2016 SD28_RS06920 1e987f5ef3104e127b7937746ca606a0 284 PANTHER PTHR12383 7 270 2.3E-80 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 SD28_RS06920 1e987f5ef3104e127b7937746ca606a0 284 Pfam PF10502 Signal peptidase, peptidase S26 224 265 4.4E-7 T 23-04-2016 IPR019533 Peptidase S26 SD28_RS05980 b7f9169f2eb94801daf8bae741b91131 245 SUPERFAMILY SSF75217 86 244 6.54E-46 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases SD28_RS05980 b7f9169f2eb94801daf8bae741b91131 245 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 1 244 2.3E-72 T 23-04-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 SD28_RS05980 b7f9169f2eb94801daf8bae741b91131 245 Gene3D G3DSA:3.40.1280.10 94 244 2.9E-52 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal SD28_RS05980 b7f9169f2eb94801daf8bae741b91131 245 Gene3D G3DSA:3.30.1330.30 1 73 1.5E-10 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like SD28_RS05980 b7f9169f2eb94801daf8bae741b91131 245 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 4 74 1.0E-8 T 23-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 SD28_RS05980 b7f9169f2eb94801daf8bae741b91131 245 SUPERFAMILY SSF55315 2 73 1.73E-5 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like SD28_RS05980 b7f9169f2eb94801daf8bae741b91131 245 Pfam PF00588 SpoU rRNA Methylase family 98 238 1.7E-38 T 23-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 SD28_RS05980 b7f9169f2eb94801daf8bae741b91131 245 PANTHER PTHR12029 3 245 1.5E-63 T 23-04-2016 SD28_RS07200 78184d53a6e4b2414fb6f59664114939 592 SMART SM00248 533 563 1.5E-4 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS07200 78184d53a6e4b2414fb6f59664114939 592 SMART SM00248 409 438 0.34 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS07200 78184d53a6e4b2414fb6f59664114939 592 SMART SM00248 443 472 0.0049 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS07200 78184d53a6e4b2414fb6f59664114939 592 PANTHER PTHR24123 524 586 2.7E-23 T 23-04-2016 SD28_RS07200 78184d53a6e4b2414fb6f59664114939 592 PANTHER PTHR24123 414 466 2.7E-23 T 23-04-2016 SD28_RS07200 78184d53a6e4b2414fb6f59664114939 592 Pfam PF12796 Ankyrin repeats (3 copies) 409 465 1.9E-9 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS07200 78184d53a6e4b2414fb6f59664114939 592 Pfam PF12796 Ankyrin repeats (3 copies) 525 587 2.8E-10 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS07200 78184d53a6e4b2414fb6f59664114939 592 SUPERFAMILY SSF48403 399 468 1.3E-26 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS07200 78184d53a6e4b2414fb6f59664114939 592 SUPERFAMILY SSF48403 526 588 1.3E-26 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS07200 78184d53a6e4b2414fb6f59664114939 592 SUPERFAMILY SSF48403 316 338 1.3E-26 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS07200 78184d53a6e4b2414fb6f59664114939 592 Gene3D G3DSA:1.25.40.20 524 588 1.2E-27 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS07200 78184d53a6e4b2414fb6f59664114939 592 Gene3D G3DSA:1.25.40.20 409 472 1.2E-27 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 Gene3D G3DSA:3.30.540.10 2 148 3.6E-47 T 23-04-2016 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 SUPERFAMILY SSF56655 1 262 4.06E-74 T 23-04-2016 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 PANTHER PTHR20854:SF4 1 263 3.8E-80 T 23-04-2016 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 Gene3D G3DSA:3.40.190.80 149 260 3.8E-27 T 23-04-2016 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 212 226 - T 23-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 Pfam PF00459 Inositol monophosphatase family 3 262 3.3E-59 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 2.3E-45 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 2.3E-45 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 2.3E-45 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 209 233 2.3E-45 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 2.3E-45 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 2.3E-45 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 PRINTS PR01959 SuhB family inositol monophosphatase signature 156 182 3.8E-7 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 3.8E-7 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 3.8E-7 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 3.8E-7 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 PANTHER PTHR20854 1 263 3.8E-80 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 SD28_RS03585 4ce171520b1448f7ef75a2298f2c9f68 263 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 23-04-2016 IPR020583 Inositol monophosphatase, metal-binding site SD28_RS04900 381d165b4b896b124d68daa0f09dce40 399 Gene3D G3DSA:3.50.50.60 3 76 2.7E-20 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS04900 381d165b4b896b124d68daa0f09dce40 399 Gene3D G3DSA:3.50.50.60 304 393 2.7E-20 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS04900 381d165b4b896b124d68daa0f09dce40 399 Gene3D G3DSA:3.50.50.60 135 216 2.7E-20 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS04900 381d165b4b896b124d68daa0f09dce40 399 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 5 397 1.2E-86 T 23-04-2016 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 SD28_RS04900 381d165b4b896b124d68daa0f09dce40 399 SUPERFAMILY SSF51905 5 260 3.04E-20 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS04900 381d165b4b896b124d68daa0f09dce40 399 PANTHER PTHR13847 4 318 1.5E-29 T 23-04-2016 SD28_RS04900 381d165b4b896b124d68daa0f09dce40 399 PANTHER PTHR13847 336 397 1.5E-29 T 23-04-2016 SD28_RS04900 381d165b4b896b124d68daa0f09dce40 399 Pfam PF01266 FAD dependent oxidoreductase 6 368 2.1E-33 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 SD28_RS04900 381d165b4b896b124d68daa0f09dce40 399 PANTHER PTHR13847:SF182 4 318 1.5E-29 T 23-04-2016 SD28_RS04900 381d165b4b896b124d68daa0f09dce40 399 PANTHER PTHR13847:SF182 336 397 1.5E-29 T 23-04-2016 SD28_RS03115 5a8ca329c512b20e83c6cae623bc7daa 1023 SUPERFAMILY SSF52980 747 1000 1.72E-26 T 23-04-2016 IPR011335 Restriction endonuclease type II-like SD28_RS03115 5a8ca329c512b20e83c6cae623bc7daa 1023 SUPERFAMILY SSF52540 303 732 4.43E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03115 5a8ca329c512b20e83c6cae623bc7daa 1023 PIRSF PIRSF000980 2 973 1.2E-236 T 23-04-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 SD28_RS03115 5a8ca329c512b20e83c6cae623bc7daa 1023 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 4 920 2.6E-215 T 23-04-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 SD28_RS03115 5a8ca329c512b20e83c6cae623bc7daa 1023 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 2 1003 11.129 T 23-04-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 SD28_RS03115 5a8ca329c512b20e83c6cae623bc7daa 1023 PANTHER PTHR30591:SF1 1 807 6.5E-154 T 23-04-2016 SD28_RS03115 5a8ca329c512b20e83c6cae623bc7daa 1023 SUPERFAMILY SSF52540 3 309 8.85E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03115 5a8ca329c512b20e83c6cae623bc7daa 1023 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 3 729 2.4E-230 T 23-04-2016 SD28_RS03115 5a8ca329c512b20e83c6cae623bc7daa 1023 Gene3D G3DSA:1.10.10.160 87 176 3.1E-19 T 23-04-2016 IPR013986 DExx box DNA helicase domain SD28_RS03115 5a8ca329c512b20e83c6cae623bc7daa 1023 PANTHER PTHR30591 1 807 6.5E-154 T 23-04-2016 SD28_RS04865 5fa8b67e2da9b12b0dcb1049b0d4f4de 456 Pfam PF00854 POT family 59 411 9.6E-57 T 23-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS04865 5fa8b67e2da9b12b0dcb1049b0d4f4de 456 PANTHER PTHR11654:SF119 1 188 1.6E-81 T 23-04-2016 SD28_RS04865 5fa8b67e2da9b12b0dcb1049b0d4f4de 456 PANTHER PTHR11654:SF119 226 455 1.6E-81 T 23-04-2016 SD28_RS04865 5fa8b67e2da9b12b0dcb1049b0d4f4de 456 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 120 132 - T 23-04-2016 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS04865 5fa8b67e2da9b12b0dcb1049b0d4f4de 456 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 47 71 - T 23-04-2016 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS04865 5fa8b67e2da9b12b0dcb1049b0d4f4de 456 Gene3D G3DSA:1.20.1250.20 3 166 1.7E-15 T 23-04-2016 SD28_RS04865 5fa8b67e2da9b12b0dcb1049b0d4f4de 456 SUPERFAMILY SSF103473 2 177 4.97E-26 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS04865 5fa8b67e2da9b12b0dcb1049b0d4f4de 456 SUPERFAMILY SSF103473 226 453 4.97E-26 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS04865 5fa8b67e2da9b12b0dcb1049b0d4f4de 456 PANTHER PTHR11654 1 188 1.6E-81 T 23-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS04865 5fa8b67e2da9b12b0dcb1049b0d4f4de 456 PANTHER PTHR11654 226 455 1.6E-81 T 23-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS04865 5fa8b67e2da9b12b0dcb1049b0d4f4de 456 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 1 445 1.3E-76 T 23-04-2016 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 SD28_RS07745 941e37fb23a985cbcbec9c34142bf683 116 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 41 102 3.7E-10 T 23-04-2016 IPR018660 C-type lysozyme, inhibitor SD28_RS07745 941e37fb23a985cbcbec9c34142bf683 116 SUPERFAMILY SSF141488 43 99 4.18E-8 T 23-04-2016 IPR018660 C-type lysozyme, inhibitor SD28_RS01035 334a20a50ca9cfa0a8e1b39e727d2c3a 254 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 127 162 2.5E-7 T 23-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 SD28_RS01035 334a20a50ca9cfa0a8e1b39e727d2c3a 254 Gene3D G3DSA:2.130.10.30 91 241 6.4E-30 T 23-04-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II SD28_RS01035 334a20a50ca9cfa0a8e1b39e727d2c3a 254 SUPERFAMILY SSF50985 99 241 1.28E-28 T 23-04-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II SD28_RS01035 334a20a50ca9cfa0a8e1b39e727d2c3a 254 PANTHER PTHR22870 107 254 1.6E-15 T 23-04-2016 SD28_RS02675 67b41ac5cc4da91a4bba91b15fd62ab2 434 Pfam PF00474 Sodium:solute symporter family 11 377 8.0E-6 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 SD28_RS02760 fdcf2b95af1db60d6f44b5636d8d8818 486 Pfam PF00324 Amino acid permease 13 474 4.1E-123 T 23-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 SD28_RS02760 fdcf2b95af1db60d6f44b5636d8d8818 486 PANTHER PTHR11785 3 485 9.8E-174 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS02760 fdcf2b95af1db60d6f44b5636d8d8818 486 PIRSF PIRSF006060 1 479 2.6E-78 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS02760 fdcf2b95af1db60d6f44b5636d8d8818 486 PANTHER PTHR11785:SF204 3 485 9.8E-174 T 23-04-2016 SD28_RS02760 fdcf2b95af1db60d6f44b5636d8d8818 486 ProSitePatterns PS00218 Amino acid permeases signature. 38 69 - T 23-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 SD28_RS00060 25f872be7ce578f6c4934d0ac88a77b0 143 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 1.3E-8 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS00060 25f872be7ce578f6c4934d0ac88a77b0 143 Pfam PF00114 Pilin (bacterial filament) 37 139 1.9E-6 T 23-04-2016 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 SD28_RS00060 25f872be7ce578f6c4934d0ac88a77b0 143 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS00060 25f872be7ce578f6c4934d0ac88a77b0 143 Pfam PF13633 Prokaryotic N-terminal methylation site 6 31 5.3E-10 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS00060 25f872be7ce578f6c4934d0ac88a77b0 143 PANTHER PTHR30093 1 89 4.1E-15 T 23-04-2016 SD28_RS00060 25f872be7ce578f6c4934d0ac88a77b0 143 SUPERFAMILY SSF54523 8 127 1.36E-20 T 23-04-2016 SD28_RS00060 25f872be7ce578f6c4934d0ac88a77b0 143 Gene3D G3DSA:3.30.700.10 8 139 1.9E-23 T 23-04-2016 SD28_RS04155 6d34f6a0bbb3dd5fe9630a8eda92d3a0 341 PANTHER PTHR30238:SF3 220 341 6.1E-90 T 23-04-2016 SD28_RS04155 6d34f6a0bbb3dd5fe9630a8eda92d3a0 341 PANTHER PTHR30238:SF3 115 165 6.1E-90 T 23-04-2016 SD28_RS04155 6d34f6a0bbb3dd5fe9630a8eda92d3a0 341 PANTHER PTHR30238 181 198 6.1E-90 T 23-04-2016 SD28_RS04155 6d34f6a0bbb3dd5fe9630a8eda92d3a0 341 PANTHER PTHR30238 3 90 6.1E-90 T 23-04-2016 SD28_RS04155 6d34f6a0bbb3dd5fe9630a8eda92d3a0 341 PANTHER PTHR30238 115 165 6.1E-90 T 23-04-2016 SD28_RS04155 6d34f6a0bbb3dd5fe9630a8eda92d3a0 341 PANTHER PTHR30238:SF3 181 198 6.1E-90 T 23-04-2016 SD28_RS04155 6d34f6a0bbb3dd5fe9630a8eda92d3a0 341 PANTHER PTHR30238:SF3 3 90 6.1E-90 T 23-04-2016 SD28_RS04155 6d34f6a0bbb3dd5fe9630a8eda92d3a0 341 Pfam PF04332 Protein of unknown function (DUF475) 48 337 8.7E-91 T 23-04-2016 IPR007427 Protein of unknown function DUF475 SD28_RS04155 6d34f6a0bbb3dd5fe9630a8eda92d3a0 341 PANTHER PTHR30238 220 341 6.1E-90 T 23-04-2016 SD28_RS01425 910502ebe50bb48b3a8e1e6eca831817 179 Gene3D G3DSA:2.160.10.10 6 176 2.4E-43 T 23-04-2016 SD28_RS01425 910502ebe50bb48b3a8e1e6eca831817 179 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 130 2.5E-6 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS01425 910502ebe50bb48b3a8e1e6eca831817 179 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 14 47 7.0E-4 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS01425 910502ebe50bb48b3a8e1e6eca831817 179 PANTHER PTHR13061 3 179 7.6E-71 T 23-04-2016 SD28_RS01425 910502ebe50bb48b3a8e1e6eca831817 179 SUPERFAMILY SSF51161 5 176 1.8E-42 T 23-04-2016 IPR011004 Trimeric LpxA-like SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 SMART SM00387 360 470 3.9E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 367 468 3.5E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 411 4.091028E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 425 4.091028E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 454 467 4.091028E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 4.091028E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 SUPERFAMILY SSF47384 233 313 6.47E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 SMART SM00388 249 314 1.5E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 Pfam PF00512 His Kinase A (phospho-acceptor) domain 252 312 1.4E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 Gene3D G3DSA:3.30.565.10 300 468 4.7E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 Gene3D G3DSA:1.10.287.130 241 299 5.5E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 SUPERFAMILY SSF55874 303 468 5.47E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 PANTHER PTHR24423:SF474 190 469 8.1E-68 T 23-04-2016 SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 PANTHER PTHR24423:SF474 1 9 8.1E-68 T 23-04-2016 SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 PANTHER PTHR24423 190 469 8.1E-68 T 23-04-2016 SD28_RS00480 247e4c800b4fd3ecedb133a752d5e93c 474 PANTHER PTHR24423 1 9 8.1E-68 T 23-04-2016 SD28_RS03535 c62b2945c86b36185c5ff87eca2c4c61 397 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 7 397 3.3E-187 T 23-04-2016 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|UniPathway: UPA00046 SD28_RS03535 c62b2945c86b36185c5ff87eca2c4c61 397 Pfam PF00155 Aminotransferase class I and II 44 386 3.5E-72 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SD28_RS03535 c62b2945c86b36185c5ff87eca2c4c61 397 PANTHER PTHR13693 1 397 1.9E-231 T 23-04-2016 SD28_RS03535 c62b2945c86b36185c5ff87eca2c4c61 397 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 2 395 51.688 T 23-04-2016 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|UniPathway: UPA00046 SD28_RS03535 c62b2945c86b36185c5ff87eca2c4c61 397 SUPERFAMILY SSF53383 5 395 9.97E-119 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS03535 c62b2945c86b36185c5ff87eca2c4c61 397 Gene3D G3DSA:3.40.640.10 58 279 2.9E-89 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS03535 c62b2945c86b36185c5ff87eca2c4c61 397 PANTHER PTHR13693:SF60 1 397 1.9E-231 T 23-04-2016 SD28_RS03535 c62b2945c86b36185c5ff87eca2c4c61 397 Gene3D G3DSA:3.90.1150.10 280 390 3.6E-32 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS03535 c62b2945c86b36185c5ff87eca2c4c61 397 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 23-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 SD28_RS00295 bbe0b22d54dcbcfdfdee213dc892c2e0 298 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 7 297 41.678 T 23-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 SD28_RS00295 bbe0b22d54dcbcfdfdee213dc892c2e0 298 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 202 208 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 SD28_RS00295 bbe0b22d54dcbcfdfdee213dc892c2e0 298 PANTHER PTHR18895 5 297 3.2E-92 T 23-04-2016 SD28_RS00295 bbe0b22d54dcbcfdfdee213dc892c2e0 298 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 25 295 9.5E-72 T 23-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 SD28_RS00295 bbe0b22d54dcbcfdfdee213dc892c2e0 298 Gene3D G3DSA:3.40.50.150 92 295 2.8E-64 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS00295 bbe0b22d54dcbcfdfdee213dc892c2e0 298 SUPERFAMILY SSF53335 21 281 2.56E-53 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS00295 bbe0b22d54dcbcfdfdee213dc892c2e0 298 PANTHER PTHR18895:SF64 5 297 3.2E-92 T 23-04-2016 SD28_RS00295 bbe0b22d54dcbcfdfdee213dc892c2e0 298 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 29 293 8.3E-85 T 23-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 SD28_RS00295 bbe0b22d54dcbcfdfdee213dc892c2e0 298 Pfam PF13847 Methyltransferase domain 132 275 9.4E-19 T 23-04-2016 IPR025714 Methyltransferase domain SD28_RS00295 bbe0b22d54dcbcfdfdee213dc892c2e0 298 Gene3D G3DSA:1.10.8.10 6 90 1.1E-17 T 23-04-2016 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 Gene3D G3DSA:3.30.420.40 3 197 7.6E-9 T 23-04-2016 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 4 15 - T 23-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 PIRSF PIRSF000722 1 384 1.9E-142 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 196 213 - T 23-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 TIGRFAM TIGR00016 ackA: acetate kinase 2 381 4.6E-134 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 PRINTS PR00471 Acetate kinase family signature 196 217 4.0E-43 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 PRINTS PR00471 Acetate kinase family signature 314 330 4.0E-43 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 PRINTS PR00471 Acetate kinase family signature 4 15 4.0E-43 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 PRINTS PR00471 Acetate kinase family signature 292 305 4.0E-43 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 PRINTS PR00471 Acetate kinase family signature 168 181 4.0E-43 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 PRINTS PR00471 Acetate kinase family signature 365 377 4.0E-43 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 PANTHER PTHR21060 1 384 1.2E-162 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 Gene3D G3DSA:3.30.420.40 198 382 1.2E-69 T 23-04-2016 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 SUPERFAMILY SSF53067 1 191 1.39E-64 T 23-04-2016 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 Pfam PF00871 Acetokinase family 4 377 3.5E-134 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 Hamap MF_00020 Acetate kinase [ackA]. 1 384 152.283 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 SUPERFAMILY SSF53067 152 383 6.57E-78 T 23-04-2016 SD28_RS01050 ad09e3f309390b060af6fb235c26364c 384 PANTHER PTHR21060:SF11 1 384 1.2E-162 T 23-04-2016 SD28_RS06045 babc0cbd7e2fca9537564a9d443cc293 323 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 235 322 2.5E-33 T 23-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 SD28_RS06045 babc0cbd7e2fca9537564a9d443cc293 323 SUPERFAMILY SSF53901 3 322 2.31E-70 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 SD28_RS06045 babc0cbd7e2fca9537564a9d443cc293 323 Gene3D G3DSA:3.40.47.10 3 162 6.9E-66 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 SD28_RS06045 babc0cbd7e2fca9537564a9d443cc293 323 Gene3D G3DSA:3.40.47.10 163 321 6.4E-50 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 SD28_RS06045 babc0cbd7e2fca9537564a9d443cc293 323 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 108 185 8.2E-35 T 23-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 SD28_RS06045 babc0cbd7e2fca9537564a9d443cc293 323 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 2 321 1.2E-127 T 23-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 SD28_RS06045 babc0cbd7e2fca9537564a9d443cc293 323 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 323 67.558 T 23-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 SD28_RS06045 babc0cbd7e2fca9537564a9d443cc293 323 PANTHER PTHR34069 1 323 3.3E-122 T 23-04-2016 SD28_RS06045 babc0cbd7e2fca9537564a9d443cc293 323 PANTHER PTHR34069:SF2 1 323 3.3E-122 T 23-04-2016 SD28_RS04740 87d3a791abe844b5744c2215278dbfc0 248 SUPERFAMILY SSF51556 2 247 1.65E-61 T 23-04-2016 IPR032466 Metal-dependent hydrolase SD28_RS04740 87d3a791abe844b5744c2215278dbfc0 248 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 23-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 SD28_RS04740 87d3a791abe844b5744c2215278dbfc0 248 PIRSF PIRSF005902 1 248 3.2E-54 T 23-04-2016 IPR001130 TatD family GO:0016788 SD28_RS04740 87d3a791abe844b5744c2215278dbfc0 248 PANTHER PTHR10060 1 247 4.2E-52 T 23-04-2016 IPR001130 TatD family GO:0016788 SD28_RS04740 87d3a791abe844b5744c2215278dbfc0 248 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 185 201 - T 23-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 SD28_RS04740 87d3a791abe844b5744c2215278dbfc0 248 Pfam PF01026 TatD related DNase 3 246 3.6E-52 T 23-04-2016 IPR001130 TatD family GO:0016788 SD28_RS04740 87d3a791abe844b5744c2215278dbfc0 248 Gene3D G3DSA:3.20.20.140 1 246 8.9E-60 T 23-04-2016 SD28_RS00690 7c58e2388deff395e05252fc9128d351 458 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 458 8.3E-256 T 23-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00690 7c58e2388deff395e05252fc9128d351 458 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 331 340 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00690 7c58e2388deff395e05252fc9128d351 458 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 458 56.548 T 23-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00690 7c58e2388deff395e05252fc9128d351 458 Gene3D G3DSA:1.10.1140.10 343 457 3.1E-55 T 23-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00690 7c58e2388deff395e05252fc9128d351 458 Gene3D G3DSA:3.40.50.300 74 341 1.3E-108 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00690 7c58e2388deff395e05252fc9128d351 458 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 128 340 2.9E-65 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00690 7c58e2388deff395e05252fc9128d351 458 Gene3D G3DSA:2.40.10.170 1 73 7.8E-30 T 23-04-2016 SD28_RS00690 7c58e2388deff395e05252fc9128d351 458 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 71 4.2E-20 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00690 7c58e2388deff395e05252fc9128d351 458 SUPERFAMILY SSF50615 1 73 4.19E-26 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00690 7c58e2388deff395e05252fc9128d351 458 SUPERFAMILY SSF47917 343 457 5.49E-53 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS00690 7c58e2388deff395e05252fc9128d351 458 PANTHER PTHR15184:SF44 1 458 0.0 T 23-04-2016 SD28_RS00690 7c58e2388deff395e05252fc9128d351 458 PANTHER PTHR15184 1 458 0.0 T 23-04-2016 SD28_RS00690 7c58e2388deff395e05252fc9128d351 458 SUPERFAMILY SSF52540 75 346 1.69E-91 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00690 7c58e2388deff395e05252fc9128d351 458 SMART SM00382 140 325 5.0E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS02595 fd4215f027c3f81ab224b92c577e5df9 172 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 28 144 4.0E-6 T 23-04-2016 SD28_RS02595 fd4215f027c3f81ab224b92c577e5df9 172 PANTHER PTHR11560 1 164 1.1E-55 T 23-04-2016 SD28_RS02595 fd4215f027c3f81ab224b92c577e5df9 172 Pfam PF00466 Ribosomal protein L10 6 101 1.8E-26 T 23-04-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 SD28_RS02595 fd4215f027c3f81ab224b92c577e5df9 172 SUPERFAMILY SSF160369 5 171 1.57E-54 T 23-04-2016 SD28_RS02595 fd4215f027c3f81ab224b92c577e5df9 172 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 161 27.112 T 23-04-2016 IPR022973 Ribosomal protein L10 SD28_RS03095 cef54fd2dcd1dd22e72567d46f05d1b2 95 SUPERFAMILY SSF143011 1 85 4.32E-8 T 23-04-2016 SD28_RS03095 cef54fd2dcd1dd22e72567d46f05d1b2 95 Pfam PF15781 ParE-like toxin of type II bacterial toxin-antitoxin system 5 90 2.7E-34 T 23-04-2016 IPR031552 Type II bacterial toxin-antitoxin system, ParE-like toxin SD28_RS03680 d0ba1c1e73288f4cf6a48779bc9dd67c 367 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 6 366 7.1E-163 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 SD28_RS03680 d0ba1c1e73288f4cf6a48779bc9dd67c 367 PANTHER PTHR21148 1 366 1.8E-179 T 23-04-2016 SD28_RS03680 d0ba1c1e73288f4cf6a48779bc9dd67c 367 Gene3D G3DSA:3.20.20.105 2 366 1.1E-168 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 SD28_RS03680 d0ba1c1e73288f4cf6a48779bc9dd67c 367 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 6 366 1.0E-170 T 23-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 SD28_RS03680 d0ba1c1e73288f4cf6a48779bc9dd67c 367 Pfam PF01702 Queuine tRNA-ribosyltransferase 130 362 6.1E-94 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 SD28_RS03680 d0ba1c1e73288f4cf6a48779bc9dd67c 367 PANTHER PTHR21148:SF26 1 366 1.8E-179 T 23-04-2016 SD28_RS03680 d0ba1c1e73288f4cf6a48779bc9dd67c 367 SUPERFAMILY SSF51713 1 366 6.02E-160 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 SD28_RS03680 d0ba1c1e73288f4cf6a48779bc9dd67c 367 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 4 360 57.3 T 23-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 SD28_RS03360 49f3e5cb5d8d9a2117425d9f1bdb94ae 795 PANTHER PTHR12815:SF11 7 795 7.5E-163 T 23-04-2016 SD28_RS03360 49f3e5cb5d8d9a2117425d9f1bdb94ae 795 Pfam PF01103 Surface antigen 455 795 1.1E-63 T 23-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 SD28_RS03360 49f3e5cb5d8d9a2117425d9f1bdb94ae 795 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 6 795 23.12 T 23-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 SD28_RS03360 49f3e5cb5d8d9a2117425d9f1bdb94ae 795 PIRSF PIRSF006076 2 795 1.2E-212 T 23-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 SD28_RS03360 49f3e5cb5d8d9a2117425d9f1bdb94ae 795 PANTHER PTHR12815 7 795 7.5E-163 T 23-04-2016 SD28_RS03360 49f3e5cb5d8d9a2117425d9f1bdb94ae 795 Pfam PF07244 Surface antigen variable number repeat 354 428 1.5E-8 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 SD28_RS03360 49f3e5cb5d8d9a2117425d9f1bdb94ae 795 Pfam PF07244 Surface antigen variable number repeat 273 351 1.4E-11 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 SD28_RS03360 49f3e5cb5d8d9a2117425d9f1bdb94ae 795 Pfam PF07244 Surface antigen variable number repeat 97 176 4.7E-11 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 SD28_RS03360 49f3e5cb5d8d9a2117425d9f1bdb94ae 795 Pfam PF07244 Surface antigen variable number repeat 180 270 3.4E-13 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 SD28_RS03360 49f3e5cb5d8d9a2117425d9f1bdb94ae 795 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 28 795 4.5E-228 T 23-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 SD28_RS02955 8ced7a6bea08947f692b199ecf1752a9 148 PANTHER PTHR37421 1 147 7.7E-50 T 23-04-2016 SD28_RS02955 8ced7a6bea08947f692b199ecf1752a9 148 PIRSF PIRSF006173 1 148 3.9E-58 T 23-04-2016 IPR008228 Uncharacterised conserved protein UCP006173 SD28_RS02955 8ced7a6bea08947f692b199ecf1752a9 148 PANTHER PTHR37421:SF1 1 147 7.7E-50 T 23-04-2016 SD28_RS02955 8ced7a6bea08947f692b199ecf1752a9 148 Pfam PF03692 Putative zinc- or iron-chelating domain 22 92 3.2E-5 T 23-04-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein SD28_RS07010 ab845dadb311ccbfb26c4e09e14600bb 297 SUPERFAMILY SSF52540 75 295 1.27E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07010 ab845dadb311ccbfb26c4e09e14600bb 297 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 3 297 30.458 T 23-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 SD28_RS07010 ab845dadb311ccbfb26c4e09e14600bb 297 Pfam PF03193 Protein of unknown function, DUF258 58 233 2.4E-47 T 23-04-2016 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 SD28_RS07010 ab845dadb311ccbfb26c4e09e14600bb 297 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 38 291 2.5E-64 T 23-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 SD28_RS07010 ab845dadb311ccbfb26c4e09e14600bb 297 Gene3D G3DSA:3.40.50.300 72 232 4.4E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07010 ab845dadb311ccbfb26c4e09e14600bb 297 PANTHER PTHR32120 5 296 8.6E-84 T 23-04-2016 SD28_RS07010 ab845dadb311ccbfb26c4e09e14600bb 297 Gene3D G3DSA:1.10.40.50 233 296 6.3E-18 T 23-04-2016 SD28_RS04455 a478dc8fd0836fb17d92c18f504a8d07 228 PANTHER PTHR30231:SF0 3 181 1.2E-78 T 23-04-2016 SD28_RS04455 a478dc8fd0836fb17d92c18f504a8d07 228 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 3 222 9.7E-75 T 23-04-2016 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS04455 a478dc8fd0836fb17d92c18f504a8d07 228 Gene3D G3DSA:3.30.420.10 3 180 4.5E-54 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS04455 a478dc8fd0836fb17d92c18f504a8d07 228 PANTHER PTHR30231 3 181 1.2E-78 T 23-04-2016 SD28_RS04455 a478dc8fd0836fb17d92c18f504a8d07 228 Pfam PF00929 Exonuclease 5 169 1.1E-29 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III SD28_RS04455 a478dc8fd0836fb17d92c18f504a8d07 228 SMART SM00479 3 178 1.8E-35 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III SD28_RS04455 a478dc8fd0836fb17d92c18f504a8d07 228 SUPERFAMILY SSF53098 3 179 4.83E-48 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS04455 a478dc8fd0836fb17d92c18f504a8d07 228 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 6 183 5.8E-54 T 23-04-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SD28_RS05770 4d62ee7272d79e18d5161a260ecd6daf 371 Pfam PF04055 Radical SAM superfamily 109 282 3.1E-18 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 SD28_RS05770 4d62ee7272d79e18d5161a260ecd6daf 371 PANTHER PTHR30544:SF5 3 369 3.7E-166 T 23-04-2016 SD28_RS05770 4d62ee7272d79e18d5161a260ecd6daf 371 Gene3D G3DSA:3.20.20.70 106 324 1.7E-20 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS05770 4d62ee7272d79e18d5161a260ecd6daf 371 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 3 357 1.0E-132 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS05770 4d62ee7272d79e18d5161a260ecd6daf 371 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 6 353 71.792 T 23-04-2016 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS05770 4d62ee7272d79e18d5161a260ecd6daf 371 SUPERFAMILY SSF102114 102 309 9.68E-17 T 23-04-2016 SD28_RS05770 4d62ee7272d79e18d5161a260ecd6daf 371 SMART SM00729 104 325 1.6E-4 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 SD28_RS05770 4d62ee7272d79e18d5161a260ecd6daf 371 PANTHER PTHR30544 3 369 3.7E-166 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS05770 4d62ee7272d79e18d5161a260ecd6daf 371 PIRSF PIRSF006004 3 365 4.9E-142 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS07195 8718e99280d8bdce302147a19fc6ff07 221 Gene3D G3DSA:1.20.144.10 48 217 4.0E-30 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase SD28_RS07195 8718e99280d8bdce302147a19fc6ff07 221 PANTHER PTHR14969 46 219 1.3E-12 T 23-04-2016 SD28_RS07195 8718e99280d8bdce302147a19fc6ff07 221 Pfam PF01569 PAP2 superfamily 104 219 9.7E-22 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase SD28_RS07195 8718e99280d8bdce302147a19fc6ff07 221 SUPERFAMILY SSF48317 36 217 1.23E-31 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase SD28_RS07195 8718e99280d8bdce302147a19fc6ff07 221 SMART SM00014 99 214 2.9E-9 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase SD28_RS02735 549c6dff7d714ea364ead0f8a0d983f1 203 SUPERFAMILY SSF89392 25 201 6.67E-38 T 23-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX SD28_RS02735 549c6dff7d714ea364ead0f8a0d983f1 203 Gene3D G3DSA:2.50.20.10 25 202 2.0E-44 T 23-04-2016 SD28_RS02735 549c6dff7d714ea364ead0f8a0d983f1 203 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 1 201 1.6E-26 T 23-04-2016 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 SD28_RS02735 549c6dff7d714ea364ead0f8a0d983f1 203 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 32 191 2.6E-31 T 23-04-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like SD28_RS02735 549c6dff7d714ea364ead0f8a0d983f1 203 PANTHER PTHR35869 7 202 2.4E-27 T 23-04-2016 SD28_RS02735 549c6dff7d714ea364ead0f8a0d983f1 203 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 7 202 25.633 T 23-04-2016 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 SD28_RS02630 d5b9b39f4617a02ff0a617cfe48a4e9f 386 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 384 5.7E-182 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 SD28_RS02630 d5b9b39f4617a02ff0a617cfe48a4e9f 386 Pfam PF02772 S-adenosylmethionine synthetase, central domain 116 232 7.2E-42 T 23-04-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 SD28_RS02630 d5b9b39f4617a02ff0a617cfe48a4e9f 386 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 260 268 - T 23-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 SD28_RS02630 d5b9b39f4617a02ff0a617cfe48a4e9f 386 SUPERFAMILY SSF55973 112 232 1.13E-47 T 23-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 SD28_RS02630 d5b9b39f4617a02ff0a617cfe48a4e9f 386 Gene3D G3DSA:3.30.300.10 245 385 1.0E-67 T 23-04-2016 SD28_RS02630 d5b9b39f4617a02ff0a617cfe48a4e9f 386 Gene3D G3DSA:3.30.300.10 134 234 2.6E-40 T 23-04-2016 SD28_RS02630 d5b9b39f4617a02ff0a617cfe48a4e9f 386 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 234 373 4.6E-68 T 23-04-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 SD28_RS02630 d5b9b39f4617a02ff0a617cfe48a4e9f 386 PIRSF PIRSF000497 1 385 4.0E-172 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 SD28_RS02630 d5b9b39f4617a02ff0a617cfe48a4e9f 386 SUPERFAMILY SSF55973 234 385 4.71E-68 T 23-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 SD28_RS02630 d5b9b39f4617a02ff0a617cfe48a4e9f 386 SUPERFAMILY SSF55973 4 111 1.81E-46 T 23-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 SD28_RS02630 d5b9b39f4617a02ff0a617cfe48a4e9f 386 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 117 127 - T 23-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 SD28_RS02630 d5b9b39f4617a02ff0a617cfe48a4e9f 386 Gene3D G3DSA:3.30.300.10 12 133 9.9E-47 T 23-04-2016 SD28_RS02630 d5b9b39f4617a02ff0a617cfe48a4e9f 386 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 384 55.638 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 SD28_RS02630 d5b9b39f4617a02ff0a617cfe48a4e9f 386 PANTHER PTHR11964 1 379 2.7E-252 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 SD28_RS02630 d5b9b39f4617a02ff0a617cfe48a4e9f 386 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 101 4.1E-41 T 23-04-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 Gene3D G3DSA:3.40.50.1440 14 213 4.8E-90 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 SUPERFAMILY SSF55307 203 317 1.67E-42 T 23-04-2016 IPR008280 Tubulin/FtsZ, C-terminal SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 ProSitePatterns PS01134 FtsZ protein signature 1. 43 77 - T 23-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 PANTHER PTHR30314:SF3 1 379 2.6E-188 T 23-04-2016 SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 SUPERFAMILY SSF52490 13 207 1.28E-66 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 PANTHER PTHR30314 1 379 2.6E-188 T 23-04-2016 SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 PRINTS PR00423 Cell division protein FtsZ signature 125 146 9.7E-51 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 PRINTS PR00423 Cell division protein FtsZ signature 97 117 9.7E-51 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 PRINTS PR00423 Cell division protein FtsZ signature 188 210 9.7E-51 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 PRINTS PR00423 Cell division protein FtsZ signature 211 232 9.7E-51 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 362 37.769 T 23-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 10 336 8.9E-132 T 23-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 SMART SM00865 206 324 3.3E-55 T 23-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 ProSitePatterns PS01135 FtsZ protein signature 2. 96 117 - T 23-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 Pfam PF12327 FtsZ family, C-terminal domain 221 316 2.9E-37 T 23-04-2016 IPR024757 Cell division protein FtsZ, C-terminal SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 Gene3D G3DSA:3.30.1330.20 214 318 5.6E-45 T 23-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 SMART SM00864 13 204 7.0E-111 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 SD28_RS01745 3cf4444867d49d77ced2719dd9e5f364 379 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 171 1.1E-40 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 SD28_RS04200 0e7672cae34a2227e6c979869a533c8b 118 PANTHER PTHR10072 11 118 1.6E-18 T 23-04-2016 SD28_RS04200 0e7672cae34a2227e6c979869a533c8b 118 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 14 118 9.4E-22 T 23-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 SD28_RS04200 0e7672cae34a2227e6c979869a533c8b 118 PANTHER PTHR10072:SF48 11 118 1.6E-18 T 23-04-2016 IPR031108 FeS assembly protein IscA-like GO:0005198|GO:0016226|GO:0051536 SD28_RS04200 0e7672cae34a2227e6c979869a533c8b 118 SUPERFAMILY SSF89360 12 105 7.85E-18 T 23-04-2016 IPR000361 FeS cluster biogenesis SD28_RS04200 0e7672cae34a2227e6c979869a533c8b 118 Pfam PF01521 Iron-sulphur cluster biosynthesis 13 113 1.2E-14 T 23-04-2016 IPR000361 FeS cluster biogenesis SD28_RS04200 0e7672cae34a2227e6c979869a533c8b 118 Gene3D G3DSA:2.60.300.12 13 106 5.3E-19 T 23-04-2016 IPR000361 FeS cluster biogenesis SD28_RS04245 96a1c1129ea4f0c26feb803e624976d4 189 Pfam PF09335 SNARE associated Golgi protein 33 147 3.2E-20 T 23-04-2016 IPR032816 SNARE associated Golgi protein SD28_RS04245 96a1c1129ea4f0c26feb803e624976d4 189 PANTHER PTHR12677 1 189 3.8E-24 T 23-04-2016 IPR015414 Transmembrane protein TMEM64/TMEM41 GO:0016021 SD28_RS05715 32ac6a228c6bf2ba2ec32e7c2e54096e 345 Gene3D G3DSA:3.40.50.10490 179 345 1.5E-34 T 23-04-2016 SD28_RS05715 32ac6a228c6bf2ba2ec32e7c2e54096e 345 Gene3D G3DSA:3.40.50.10490 5 170 2.8E-29 T 23-04-2016 SD28_RS05715 32ac6a228c6bf2ba2ec32e7c2e54096e 345 Pfam PF01380 SIS domain 40 164 1.3E-18 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 SD28_RS05715 32ac6a228c6bf2ba2ec32e7c2e54096e 345 Pfam PF01380 SIS domain 199 282 9.2E-9 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 SD28_RS05715 32ac6a228c6bf2ba2ec32e7c2e54096e 345 SUPERFAMILY SSF53697 6 343 3.62E-69 T 23-04-2016 SD28_RS05715 32ac6a228c6bf2ba2ec32e7c2e54096e 345 PANTHER PTHR10937 1 344 1.8E-89 T 23-04-2016 SD28_RS05715 32ac6a228c6bf2ba2ec32e7c2e54096e 345 PANTHER PTHR10937:SF8 1 344 1.8E-89 T 23-04-2016 SD28_RS02020 3662b5368eb827686e6995953356bb2e 668 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 330 342 1.9E-57 T 23-04-2016 SD28_RS02020 3662b5368eb827686e6995953356bb2e 668 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 435 454 1.9E-57 T 23-04-2016 SD28_RS02020 3662b5368eb827686e6995953356bb2e 668 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 117 137 1.9E-57 T 23-04-2016 SD28_RS02020 3662b5368eb827686e6995953356bb2e 668 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 240 261 1.9E-57 T 23-04-2016 SD28_RS02020 3662b5368eb827686e6995953356bb2e 668 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 89 114 1.9E-57 T 23-04-2016 SD28_RS02020 3662b5368eb827686e6995953356bb2e 668 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 262 288 1.9E-57 T 23-04-2016 SD28_RS02020 3662b5368eb827686e6995953356bb2e 668 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 164 185 1.9E-57 T 23-04-2016 SD28_RS02020 3662b5368eb827686e6995953356bb2e 668 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 71 128 4.7E-21 T 23-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal SD28_RS02020 3662b5368eb827686e6995953356bb2e 668 PANTHER PTHR22773:SF50 2 495 1.1E-227 T 23-04-2016 SD28_RS02020 3662b5368eb827686e6995953356bb2e 668 PANTHER PTHR22773:SF50 513 618 1.1E-227 T 23-04-2016 SD28_RS02020 3662b5368eb827686e6995953356bb2e 668 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 11 664 3.8E-220 T 23-04-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 SD28_RS02020 3662b5368eb827686e6995953356bb2e 668 Pfam PF00361 Proton-conducting membrane transporter 141 423 9.1E-81 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 SD28_RS02020 3662b5368eb827686e6995953356bb2e 668 PANTHER PTHR22773 2 495 1.1E-227 T 23-04-2016 SD28_RS02020 3662b5368eb827686e6995953356bb2e 668 PANTHER PTHR22773 513 618 1.1E-227 T 23-04-2016 SD28_RS05580 c9003466abe76a09edb57c340eb533ee 197 PIRSF PIRSF035805 1 196 3.4E-55 T 23-04-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 SD28_RS05580 c9003466abe76a09edb57c340eb533ee 197 SUPERFAMILY SSF57716 142 195 1.52E-7 T 23-04-2016 SD28_RS05580 c9003466abe76a09edb57c340eb533ee 197 Hamap MF_00124 Thymidine kinase [tdk]. 1 194 31.324 T 23-04-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 SD28_RS05580 c9003466abe76a09edb57c340eb533ee 197 Gene3D G3DSA:3.40.50.300 14 112 3.9E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05580 c9003466abe76a09edb57c340eb533ee 197 PANTHER PTHR11441 1 196 2.3E-46 T 23-04-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 SD28_RS05580 c9003466abe76a09edb57c340eb533ee 197 Gene3D G3DSA:3.30.60.20 142 193 7.7E-8 T 23-04-2016 SD28_RS05580 c9003466abe76a09edb57c340eb533ee 197 SUPERFAMILY SSF52540 1 140 9.64E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05580 c9003466abe76a09edb57c340eb533ee 197 Pfam PF00265 Thymidine kinase 3 191 7.2E-42 T 23-04-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 SD28_RS00250 2610adc3b474f507f932714441734ede 364 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 70 288 1.2E-82 T 23-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 SD28_RS00250 2610adc3b474f507f932714441734ede 364 PANTHER PTHR32039:SF8 47 362 3.0E-114 T 23-04-2016 SD28_RS00250 2610adc3b474f507f932714441734ede 364 SUPERFAMILY SSF102405 81 288 2.04E-39 T 23-04-2016 SD28_RS00250 2610adc3b474f507f932714441734ede 364 Pfam PF02481 DNA recombination-mediator protein A 74 279 2.3E-80 T 23-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 SD28_RS00250 2610adc3b474f507f932714441734ede 364 PANTHER PTHR32039 47 362 3.0E-114 T 23-04-2016 SD28_RS00250 2610adc3b474f507f932714441734ede 364 Gene3D G3DSA:3.40.50.450 115 274 1.7E-8 T 23-04-2016 SD28_RS05900 1452fc2e20ded116460f7564a9c789c6 125 SUPERFAMILY SSF55298 2 125 1.29E-44 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like SD28_RS05900 1452fc2e20ded116460f7564a9c789c6 125 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 101 119 - T 23-04-2016 IPR019897 RidA, conserved site SD28_RS05900 1452fc2e20ded116460f7564a9c789c6 125 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 4 124 4.8E-51 T 23-04-2016 IPR006056 RidA family SD28_RS05900 1452fc2e20ded116460f7564a9c789c6 125 Gene3D G3DSA:3.30.1330.40 3 125 4.0E-49 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like SD28_RS05900 1452fc2e20ded116460f7564a9c789c6 125 PANTHER PTHR11803 6 125 2.1E-52 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family SD28_RS05900 1452fc2e20ded116460f7564a9c789c6 125 Pfam PF01042 Endoribonuclease L-PSP 10 124 3.8E-42 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family SD28_RS01275 4663d3050485fd074725f44039796822 390 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 3 386 20.671 T 23-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 SD28_RS01275 4663d3050485fd074725f44039796822 390 Pfam PF06965 Na+/H+ antiporter 1 7 377 5.2E-130 T 23-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 SD28_RS01275 4663d3050485fd074725f44039796822 390 PANTHER PTHR30341:SF0 7 381 5.3E-124 T 23-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 SD28_RS01275 4663d3050485fd074725f44039796822 390 PANTHER PTHR30341 7 381 5.3E-124 T 23-04-2016 SD28_RS01275 4663d3050485fd074725f44039796822 390 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 7 377 7.1E-117 T 23-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 SD28_RS01275 4663d3050485fd074725f44039796822 390 Gene3D G3DSA:1.20.1530.10 7 381 3.8E-132 T 23-04-2016 IPR023171 Na/H antiporter domain SD28_RS03380 6924024a52a969f980529f6e3f5f71e1 259 PANTHER PTHR23416:SF8 2 251 3.2E-96 T 23-04-2016 SD28_RS03380 6924024a52a969f980529f6e3f5f71e1 259 SUPERFAMILY SSF51161 2 259 8.03E-70 T 23-04-2016 IPR011004 Trimeric LpxA-like SD28_RS03380 6924024a52a969f980529f6e3f5f71e1 259 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 11 45 2.2E-8 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS03380 6924024a52a969f980529f6e3f5f71e1 259 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 104 138 6.7E-7 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS03380 6924024a52a969f980529f6e3f5f71e1 259 PIRSF PIRSF000456 1 259 1.1E-96 T 23-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 SD28_RS03380 6924024a52a969f980529f6e3f5f71e1 259 Gene3D G3DSA:1.20.1180.10 194 259 2.8E-20 T 23-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 SD28_RS03380 6924024a52a969f980529f6e3f5f71e1 259 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 2 257 4.6E-89 T 23-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 SD28_RS03380 6924024a52a969f980529f6e3f5f71e1 259 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 14 42 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 SD28_RS03380 6924024a52a969f980529f6e3f5f71e1 259 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 175 257 7.1E-22 T 23-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 SD28_RS03380 6924024a52a969f980529f6e3f5f71e1 259 PANTHER PTHR23416 2 251 3.2E-96 T 23-04-2016 SD28_RS03380 6924024a52a969f980529f6e3f5f71e1 259 Gene3D G3DSA:2.160.10.10 2 185 5.5E-44 T 23-04-2016 SD28_RS00740 75d9cfb3784ec339d0c332407fd4f6fa 355 PANTHER PTHR12169 1 346 3.1E-112 T 23-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 SD28_RS00740 75d9cfb3784ec339d0c332407fd4f6fa 355 SUPERFAMILY SSF52540 50 209 8.25E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00740 75d9cfb3784ec339d0c332407fd4f6fa 355 Pfam PF03969 AFG1-like ATPase 1 348 4.4E-106 T 23-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 SD28_RS00740 75d9cfb3784ec339d0c332407fd4f6fa 355 PANTHER PTHR12169:SF11 1 346 3.1E-112 T 23-04-2016 SD28_RS00740 75d9cfb3784ec339d0c332407fd4f6fa 355 Gene3D G3DSA:3.40.50.300 22 165 7.6E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 256 358 5.7E-24 T 23-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 PANTHER PTHR22573 1 440 2.6E-127 T 23-04-2016 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 156 252 3.4E-16 T 23-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 Gene3D G3DSA:3.30.310.50 366 440 8.2E-14 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 134 7.4E-41 T 23-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 SUPERFAMILY SSF53738 256 358 5.49E-24 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 370 428 1.9E-12 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 5 439 1.3E-137 T 23-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 PANTHER PTHR22573:SF15 1 440 2.6E-127 T 23-04-2016 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 Gene3D G3DSA:3.40.120.10 174 248 4.5E-21 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 SUPERFAMILY SSF53738 156 253 1.41E-22 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 5.9E-11 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 172 191 5.9E-11 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 232 247 5.9E-11 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 Gene3D G3DSA:3.40.120.10 3 148 1.6E-45 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 SUPERFAMILY SSF53738 3 179 1.02E-40 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 441 39.164 T 23-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 Gene3D G3DSA:3.40.120.10 249 358 1.7E-26 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00840 21dab04ef5baff575bcd5ac2a7d8e4b3 443 SUPERFAMILY SSF55957 364 441 2.88E-17 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SD28_RS00660 a95cd5695bccbfebe7704788676a74f2 97 SUPERFAMILY SSF52091 9 95 1.51E-10 T 23-04-2016 IPR002645 STAS domain SD28_RS00660 a95cd5695bccbfebe7704788676a74f2 97 Gene3D G3DSA:3.30.750.24 9 93 2.3E-10 T 23-04-2016 IPR002645 STAS domain SD28_RS00660 a95cd5695bccbfebe7704788676a74f2 97 Pfam PF01740 STAS domain 11 89 7.4E-5 T 23-04-2016 IPR002645 STAS domain SD28_RS05425 1367365d77734ec4b42933dc4f815716 486 SUPERFAMILY SSF53613 214 484 8.51E-62 T 23-04-2016 IPR029056 Ribokinase-like SD28_RS05425 1367365d77734ec4b42933dc4f815716 486 Gene3D G3DSA:3.40.1190.20 228 485 1.4E-71 T 23-04-2016 IPR029056 Ribokinase-like SD28_RS05425 1367365d77734ec4b42933dc4f815716 486 PANTHER PTHR12592:SF0 1 479 4.6E-89 T 23-04-2016 SD28_RS05425 1367365d77734ec4b42933dc4f815716 486 Gene3D G3DSA:3.40.50.10260 1 227 1.6E-45 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 SD28_RS05425 1367365d77734ec4b42933dc4f815716 486 PIRSF PIRSF017184 1 486 4.6E-106 T 23-04-2016 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 SD28_RS05425 1367365d77734ec4b42933dc4f815716 486 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 8 195 1.8E-29 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 SD28_RS05425 1367365d77734ec4b42933dc4f815716 486 PANTHER PTHR12592 1 479 4.6E-89 T 23-04-2016 SD28_RS05425 1367365d77734ec4b42933dc4f815716 486 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 222 479 5.4E-57 T 23-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 SD28_RS05425 1367365d77734ec4b42933dc4f815716 486 Pfam PF01256 Carbohydrate kinase 239 476 4.9E-51 T 23-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 SD28_RS05425 1367365d77734ec4b42933dc4f815716 486 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 215 484 18.955 T 23-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 SD28_RS05425 1367365d77734ec4b42933dc4f815716 486 SUPERFAMILY SSF64153 1 236 7.19E-43 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 SD28_RS05425 1367365d77734ec4b42933dc4f815716 486 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 422 432 - T 23-04-2016 IPR017953 Carbohydrate kinase, predicted, conserved site SD28_RS05425 1367365d77734ec4b42933dc4f815716 486 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 5 198 18.247 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 SD28_RS05425 1367365d77734ec4b42933dc4f815716 486 Pfam PF03853 YjeF-related protein N-terminus 22 177 1.5E-35 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 SD28_RS04665 2506908941c18639f5af2822d4691da9 312 PANTHER PTHR22976:SF1 1 309 3.9E-136 T 23-04-2016 SD28_RS04665 2506908941c18639f5af2822d4691da9 312 TIGRFAM TIGR00433 bioB: biotin synthase 8 306 5.1E-117 T 23-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 SD28_RS04665 2506908941c18639f5af2822d4691da9 312 Pfam PF04055 Radical SAM superfamily 43 201 2.3E-16 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 SD28_RS04665 2506908941c18639f5af2822d4691da9 312 SMART SM00876 213 308 3.1E-36 T 23-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 SD28_RS04665 2506908941c18639f5af2822d4691da9 312 SMART SM00729 36 248 2.8E-35 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 SD28_RS04665 2506908941c18639f5af2822d4691da9 312 Gene3D G3DSA:3.20.20.70 2 308 4.6E-89 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS04665 2506908941c18639f5af2822d4691da9 312 PIRSF PIRSF001619 1 312 4.6E-124 T 23-04-2016 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 SD28_RS04665 2506908941c18639f5af2822d4691da9 312 Hamap MF_01694 Biotin synthase [bioB]. 2 309 40.818 T 23-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 SD28_RS04665 2506908941c18639f5af2822d4691da9 312 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 213 306 7.8E-20 T 23-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 SD28_RS04665 2506908941c18639f5af2822d4691da9 312 SUPERFAMILY SSF102114 2 308 2.75E-77 T 23-04-2016 SD28_RS04665 2506908941c18639f5af2822d4691da9 312 PANTHER PTHR22976 1 309 3.9E-136 T 23-04-2016 SD28_RS04010 5d8cf75f485edc759aff7789414cb3f1 385 SMART SM00925 133 283 1.1E-69 T 23-04-2016 IPR005300 Lytic transglycosylase MltA GO:0004553 SD28_RS04010 5d8cf75f485edc759aff7789414cb3f1 385 Pfam PF03562 MltA specific insert domain 55 283 6.7E-72 T 23-04-2016 IPR005300 Lytic transglycosylase MltA GO:0004553 SD28_RS04010 5d8cf75f485edc759aff7789414cb3f1 385 Gene3D G3DSA:2.40.40.10 43 189 1.1E-27 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain SD28_RS04010 5d8cf75f485edc759aff7789414cb3f1 385 Gene3D G3DSA:2.40.40.10 195 383 3.2E-51 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain SD28_RS04010 5d8cf75f485edc759aff7789414cb3f1 385 PIRSF PIRSF019422 1 385 9.1E-128 T 23-04-2016 IPR026044 Membrane-bound lytic murein transglycosylase A SD28_RS04010 5d8cf75f485edc759aff7789414cb3f1 385 PANTHER PTHR30124 72 384 1.4E-97 T 23-04-2016 SD28_RS04010 5d8cf75f485edc759aff7789414cb3f1 385 SUPERFAMILY SSF50685 44 383 2.86E-115 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain SD28_RS04010 5d8cf75f485edc759aff7789414cb3f1 385 Pfam PF06725 3D domain 303 379 8.3E-22 T 23-04-2016 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 SD28_RS04010 5d8cf75f485edc759aff7789414cb3f1 385 PANTHER PTHR30124:SF0 72 384 1.4E-97 T 23-04-2016 SD28_RS03810 dafea60ce3982f6e159d831543f9d382 109 Gene3D G3DSA:2.30.30.100 3 70 1.9E-35 T 23-04-2016 SD28_RS03810 dafea60ce3982f6e159d831543f9d382 109 PANTHER PTHR34772:SF1 1 94 2.3E-37 T 23-04-2016 SD28_RS03810 dafea60ce3982f6e159d831543f9d382 109 PANTHER PTHR34772 1 94 2.3E-37 T 23-04-2016 SD28_RS03810 dafea60ce3982f6e159d831543f9d382 109 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 26.862 T 23-04-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 SD28_RS03810 dafea60ce3982f6e159d831543f9d382 109 SUPERFAMILY SSF50182 7 69 6.31E-24 T 23-04-2016 IPR010920 LSM domain SD28_RS03810 dafea60ce3982f6e159d831543f9d382 109 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 6 64 3.8E-29 T 23-04-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 SD28_RS04230 ae50adc49e2dd161bb5c8128d2525227 174 SUPERFAMILY SSF55200 85 172 3.14E-34 T 23-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 SD28_RS04230 ae50adc49e2dd161bb5c8128d2525227 174 SUPERFAMILY SSF54364 8 80 3.79E-27 T 23-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 SD28_RS04230 ae50adc49e2dd161bb5c8128d2525227 174 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 9 172 1.8E-66 T 23-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 SD28_RS04230 ae50adc49e2dd161bb5c8128d2525227 174 Gene3D G3DSA:3.30.110.10 81 172 3.3E-40 T 23-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 SD28_RS04230 ae50adc49e2dd161bb5c8128d2525227 174 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 9 77 1.8E-29 T 23-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 SD28_RS04230 ae50adc49e2dd161bb5c8128d2525227 174 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 3 172 29.86 T 23-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 SD28_RS04230 ae50adc49e2dd161bb5c8128d2525227 174 PANTHER PTHR10938 9 174 2.5E-64 T 23-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 SD28_RS04230 ae50adc49e2dd161bb5c8128d2525227 174 Gene3D G3DSA:3.10.20.80 5 80 1.8E-32 T 23-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 SD28_RS04230 ae50adc49e2dd161bb5c8128d2525227 174 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 85 170 4.0E-38 T 23-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 SD28_RS00225 219067289f191a4df701f67634fa2145 317 PANTHER PTHR30426 1 311 3.8E-141 T 23-04-2016 SD28_RS00225 219067289f191a4df701f67634fa2145 317 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 286 35.392 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 SD28_RS00225 219067289f191a4df701f67634fa2145 317 Pfam PF02401 LytB protein 3 282 1.9E-87 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 SD28_RS00225 219067289f191a4df701f67634fa2145 317 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 285 2.1E-93 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 SD28_RS05115 4ce8384d9e8eff2e35077b2c7c493f63 204 Pfam PF01227 GTP cyclohydrolase I 41 204 6.9E-45 T 23-04-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 SD28_RS05115 4ce8384d9e8eff2e35077b2c7c493f63 204 SUPERFAMILY SSF55620 28 203 1.78E-52 T 23-04-2016 SD28_RS05115 4ce8384d9e8eff2e35077b2c7c493f63 204 Gene3D G3DSA:3.30.1130.10 92 203 1.3E-36 T 23-04-2016 SD28_RS05115 4ce8384d9e8eff2e35077b2c7c493f63 204 PANTHER PTHR11109 20 203 7.0E-34 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 SD28_RS05115 4ce8384d9e8eff2e35077b2c7c493f63 204 Gene3D G3DSA:1.10.286.10 12 83 8.5E-14 T 23-04-2016 SD28_RS05115 4ce8384d9e8eff2e35077b2c7c493f63 204 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 144 154 - T 23-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 SD28_RS07320 726a14cc8e46f4bfb0d5bfcb512e3c25 281 PANTHER PTHR10067 1 279 5.8E-79 T 23-04-2016 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 SD28_RS07320 726a14cc8e46f4bfb0d5bfcb512e3c25 281 Pfam PF02666 Phosphatidylserine decarboxylase 63 276 8.6E-57 T 23-04-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 SD28_RS07320 726a14cc8e46f4bfb0d5bfcb512e3c25 281 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 50 277 9.2E-71 T 23-04-2016 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 SD28_RS07320 726a14cc8e46f4bfb0d5bfcb512e3c25 281 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 10 280 40.242 T 23-04-2016 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 SD28_RS01040 224dd5d23d25fb3db65aa4ab89119451 915 Pfam PF00271 Helicase conserved C-terminal domain 409 505 5.9E-13 T 23-04-2016 IPR001650 Helicase, C-terminal SD28_RS01040 224dd5d23d25fb3db65aa4ab89119451 915 Pfam PF04851 Type III restriction enzyme, res subunit 188 335 1.3E-31 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 SD28_RS01040 224dd5d23d25fb3db65aa4ab89119451 915 Pfam PF11907 Domain of unknown function (DUF3427) 647 904 1.1E-39 T 23-04-2016 IPR021835 Protein of unknown function DUF3427 SD28_RS01040 224dd5d23d25fb3db65aa4ab89119451 915 PANTHER PTHR30195 14 885 1.1E-104 T 23-04-2016 SD28_RS01040 224dd5d23d25fb3db65aa4ab89119451 915 Gene3D G3DSA:3.40.50.300 184 343 4.1E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01040 224dd5d23d25fb3db65aa4ab89119451 915 SMART SM00490 426 507 2.8E-11 T 23-04-2016 IPR001650 Helicase, C-terminal SD28_RS01040 224dd5d23d25fb3db65aa4ab89119451 915 SMART SM00487 185 362 6.5E-19 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain SD28_RS01040 224dd5d23d25fb3db65aa4ab89119451 915 Pfam PF13091 PLD-like domain 25 151 1.3E-9 T 23-04-2016 IPR025202 Phospholipase D-like domain SD28_RS01040 224dd5d23d25fb3db65aa4ab89119451 915 SUPERFAMILY SSF56024 7 155 4.93E-12 T 23-04-2016 SD28_RS01040 224dd5d23d25fb3db65aa4ab89119451 915 Gene3D G3DSA:3.40.50.300 397 532 1.8E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01040 224dd5d23d25fb3db65aa4ab89119451 915 Gene3D G3DSA:3.30.870.10 8 157 1.7E-11 T 23-04-2016 SD28_RS01040 224dd5d23d25fb3db65aa4ab89119451 915 SUPERFAMILY SSF52540 234 528 2.84E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01040 224dd5d23d25fb3db65aa4ab89119451 915 PANTHER PTHR30195:SF16 14 885 1.1E-104 T 23-04-2016 SD28_RS04235 1e50c09c49013edc8508abd50ea00b6c 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 23-04-2016 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS04235 1e50c09c49013edc8508abd50ea00b6c 65 PANTHER PTHR33343 1 65 2.3E-25 T 23-04-2016 SD28_RS04235 1e50c09c49013edc8508abd50ea00b6c 65 SUPERFAMILY SSF143034 2 64 3.01E-21 T 23-04-2016 SD28_RS04235 1e50c09c49013edc8508abd50ea00b6c 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 16.492 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 SD28_RS04235 1e50c09c49013edc8508abd50ea00b6c 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.0E-16 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 SD28_RS04235 1e50c09c49013edc8508abd50ea00b6c 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.0E-16 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 SD28_RS04235 1e50c09c49013edc8508abd50ea00b6c 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.0E-16 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 SD28_RS04235 1e50c09c49013edc8508abd50ea00b6c 65 Pfam PF01632 Ribosomal protein L35 2 58 1.5E-21 T 23-04-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS04235 1e50c09c49013edc8508abd50ea00b6c 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 3.2E-22 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 SD28_RS06360 46bed9bf4a0314e36ce0877004c2d391 481 PANTHER PTHR11773 24 479 2.5E-215 T 23-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 SD28_RS06360 46bed9bf4a0314e36ce0877004c2d391 481 Gene3D G3DSA:3.40.640.10 82 301 3.0E-33 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS06360 46bed9bf4a0314e36ce0877004c2d391 481 Hamap MF_00713 Probable glycine dehydrogenase (decarboxylating) subunit 2 [gcvPB]. 1 480 53.798 T 23-04-2016 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 GO:0004375|GO:0019464 KEGG: 00260+1.4.4.2 SD28_RS06360 46bed9bf4a0314e36ce0877004c2d391 481 SUPERFAMILY SSF53383 9 478 2.02E-108 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS06360 46bed9bf4a0314e36ce0877004c2d391 481 Pfam PF02347 Glycine cleavage system P-protein 25 300 1.9E-12 T 23-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 SD28_RS06545 8dc2fd5a1b55e51b57c8374499c1493e 219 SUPERFAMILY SSF52317 1 216 8.37E-49 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS06545 8dc2fd5a1b55e51b57c8374499c1493e 219 PANTHER PTHR10224 1 216 4.8E-80 T 23-04-2016 SD28_RS06545 8dc2fd5a1b55e51b57c8374499c1493e 219 PANTHER PTHR10224:SF10 1 216 4.8E-80 T 23-04-2016 SD28_RS06545 8dc2fd5a1b55e51b57c8374499c1493e 219 Gene3D G3DSA:3.40.50.880 1 218 2.0E-83 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS06545 8dc2fd5a1b55e51b57c8374499c1493e 219 Pfam PF01965 DJ-1/PfpI family 15 169 2.7E-7 T 23-04-2016 IPR002818 DJ-1/PfpI SD28_RS06545 8dc2fd5a1b55e51b57c8374499c1493e 219 PIRSF PIRSF006320 1 219 1.5E-93 T 23-04-2016 IPR026041 Enhancing lycopene biosynthesis protein 2 SD28_RS02520 dc6aec5e555448f6d01d6755d31b6d64 400 PANTHER PTHR23512:SF1 5 358 1.1E-46 T 23-04-2016 SD28_RS02520 dc6aec5e555448f6d01d6755d31b6d64 400 PANTHER PTHR23512 5 358 1.1E-46 T 23-04-2016 SD28_RS02520 dc6aec5e555448f6d01d6755d31b6d64 400 Gene3D G3DSA:1.20.1250.20 209 388 1.7E-9 T 23-04-2016 SD28_RS02520 dc6aec5e555448f6d01d6755d31b6d64 400 Gene3D G3DSA:1.20.1250.20 3 189 1.1E-20 T 23-04-2016 SD28_RS02520 dc6aec5e555448f6d01d6755d31b6d64 400 Pfam PF07690 Major Facilitator Superfamily 18 348 3.0E-28 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS02520 dc6aec5e555448f6d01d6755d31b6d64 400 SUPERFAMILY SSF103473 6 388 6.28E-43 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS00240 ae1949ab5bc3b08d2e63b62f7531c3b9 153 Pfam PF03703 Bacterial PH domain 68 138 8.7E-10 T 23-04-2016 IPR005182 Domain of unknown function DUF304 SD28_RS06700 abd8c548e86e21fe63187a658957bc09 263 SUPERFAMILY SSF53448 8 234 1.37E-58 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS06700 abd8c548e86e21fe63187a658957bc09 263 PANTHER PTHR22916 8 263 1.7E-50 T 23-04-2016 SD28_RS06700 abd8c548e86e21fe63187a658957bc09 263 Gene3D G3DSA:3.90.550.10 8 228 1.6E-53 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS06700 abd8c548e86e21fe63187a658957bc09 263 Pfam PF00535 Glycosyl transferase family 2 10 161 7.9E-39 T 23-04-2016 IPR001173 Glycosyltransferase 2-like SD28_RS05675 0662879ccc85797d6f898f62a2444b20 595 Pfam PF16188 C-terminal region of peptidase_M24 534 594 5.0E-13 T 23-04-2016 IPR032416 Peptidase M24, C-terminal domain SD28_RS05675 0662879ccc85797d6f898f62a2444b20 595 Pfam PF01321 Creatinase/Prolidase N-terminal domain 5 140 2.7E-9 T 23-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 SD28_RS05675 0662879ccc85797d6f898f62a2444b20 595 SUPERFAMILY SSF53092 8 115 3.31E-8 T 23-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal SD28_RS05675 0662879ccc85797d6f898f62a2444b20 595 Gene3D G3DSA:3.90.230.10 301 560 9.1E-60 T 23-04-2016 IPR000994 Peptidase M24, structural domain SD28_RS05675 0662879ccc85797d6f898f62a2444b20 595 Pfam PF00557 Metallopeptidase family M24 312 521 2.1E-46 T 23-04-2016 IPR000994 Peptidase M24, structural domain SD28_RS05675 0662879ccc85797d6f898f62a2444b20 595 SUPERFAMILY SSF55920 304 559 3.14E-55 T 23-04-2016 IPR000994 Peptidase M24, structural domain SD28_RS05675 0662879ccc85797d6f898f62a2444b20 595 PANTHER PTHR10804 1 181 1.9E-177 T 23-04-2016 SD28_RS05675 0662879ccc85797d6f898f62a2444b20 595 PANTHER PTHR10804 283 592 1.9E-177 T 23-04-2016 SD28_RS05675 0662879ccc85797d6f898f62a2444b20 595 Gene3D G3DSA:3.40.350.10 1 123 2.5E-13 T 23-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal SD28_RS05675 0662879ccc85797d6f898f62a2444b20 595 Gene3D G3DSA:3.40.350.10 172 284 2.7E-8 T 23-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal SD28_RS05675 0662879ccc85797d6f898f62a2444b20 595 Pfam PF16189 Creatinase/Prolidase N-terminal domain 153 307 1.3E-43 T 23-04-2016 SD28_RS05675 0662879ccc85797d6f898f62a2444b20 595 PANTHER PTHR10804:SF87 1 181 1.9E-177 T 23-04-2016 SD28_RS05675 0662879ccc85797d6f898f62a2444b20 595 PANTHER PTHR10804:SF87 283 592 1.9E-177 T 23-04-2016 SD28_RS00500 7141a88e697733342dc3765ef1436a0e 342 PANTHER PTHR30486:SF6 2 342 2.4E-147 T 23-04-2016 SD28_RS00500 7141a88e697733342dc3765ef1436a0e 342 Gene3D G3DSA:3.30.450.90 2 100 2.6E-7 T 23-04-2016 SD28_RS00500 7141a88e697733342dc3765ef1436a0e 342 Gene3D G3DSA:3.40.50.300 103 339 5.2E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00500 7141a88e697733342dc3765ef1436a0e 342 PANTHER PTHR30486 2 342 2.4E-147 T 23-04-2016 SD28_RS00500 7141a88e697733342dc3765ef1436a0e 342 SUPERFAMILY SSF52540 2 338 3.52E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00500 7141a88e697733342dc3765ef1436a0e 342 Pfam PF00437 Type II/IV secretion system protein 11 266 1.7E-41 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 SD28_RS00500 7141a88e697733342dc3765ef1436a0e 342 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 2 338 7.4E-135 T 23-04-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 SD28_RS00500 7141a88e697733342dc3765ef1436a0e 342 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 194 208 - T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 SD28_RS01615 046830dbcc31664af0cf99ac4e9f5bdd 115 SUPERFAMILY SSF54211 11 110 3.79E-15 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS01615 046830dbcc31664af0cf99ac4e9f5bdd 115 Gene3D G3DSA:3.30.230.10 9 110 3.5E-18 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SD28_RS01615 046830dbcc31664af0cf99ac4e9f5bdd 115 Pfam PF00825 Ribonuclease P 9 110 1.3E-18 T 23-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 SD28_RS01615 046830dbcc31664af0cf99ac4e9f5bdd 115 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 10 109 3.0E-15 T 23-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 SD28_RS01615 046830dbcc31664af0cf99ac4e9f5bdd 115 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 28 107 5.0E-8 T 23-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 SD28_RS01005 961c4053ae3b2c7ce0484610b0a09ca5 353 PIRSF PIRSF006769 1 348 7.2E-111 T 23-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 SD28_RS01005 961c4053ae3b2c7ce0484610b0a09ca5 353 PANTHER PTHR11079 1 225 4.1E-60 T 23-04-2016 SD28_RS01005 961c4053ae3b2c7ce0484610b0a09ca5 353 Pfam PF01872 RibD C-terminal domain 149 323 1.0E-32 T 23-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 SD28_RS01005 961c4053ae3b2c7ce0484610b0a09ca5 353 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 52 90 - T 23-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 SD28_RS01005 961c4053ae3b2c7ce0484610b0a09ca5 353 Gene3D G3DSA:3.40.430.10 131 328 5.4E-49 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain SD28_RS01005 961c4053ae3b2c7ce0484610b0a09ca5 353 Gene3D G3DSA:3.40.140.10 4 130 1.1E-34 T 23-04-2016 SD28_RS01005 961c4053ae3b2c7ce0484610b0a09ca5 353 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 4 101 9.8E-21 T 23-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 SD28_RS01005 961c4053ae3b2c7ce0484610b0a09ca5 353 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 9 331 1.4E-95 T 23-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 SD28_RS01005 961c4053ae3b2c7ce0484610b0a09ca5 353 SUPERFAMILY SSF53597 149 340 3.03E-39 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain SD28_RS01005 961c4053ae3b2c7ce0484610b0a09ca5 353 SUPERFAMILY SSF53927 5 145 8.7E-45 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 SD28_RS01005 961c4053ae3b2c7ce0484610b0a09ca5 353 PANTHER PTHR11079:SF10 1 225 4.1E-60 T 23-04-2016 SD28_RS07680 c55b1d19ec6bddc3a9ee1a338dffcc01 304 SMART SM00470 47 137 1.7E-25 T 23-04-2016 IPR003115 ParB/Sulfiredoxin SD28_RS07680 c55b1d19ec6bddc3a9ee1a338dffcc01 304 Gene3D G3DSA:3.90.1530.10 42 142 5.4E-27 T 23-04-2016 SD28_RS07680 c55b1d19ec6bddc3a9ee1a338dffcc01 304 Pfam PF08535 KorB domain 159 249 3.3E-24 T 23-04-2016 IPR013741 Transcriptional repressor protein KorB SD28_RS07680 c55b1d19ec6bddc3a9ee1a338dffcc01 304 SUPERFAMILY SSF110849 46 178 9.77E-27 T 23-04-2016 IPR003115 ParB/Sulfiredoxin SD28_RS07680 c55b1d19ec6bddc3a9ee1a338dffcc01 304 PANTHER PTHR33375 4 249 3.2E-42 T 23-04-2016 SD28_RS07680 c55b1d19ec6bddc3a9ee1a338dffcc01 304 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 46 198 4.8E-33 T 23-04-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 SD28_RS07680 c55b1d19ec6bddc3a9ee1a338dffcc01 304 Pfam PF02195 ParB-like nuclease domain 48 136 1.5E-21 T 23-04-2016 IPR003115 ParB/Sulfiredoxin SD28_RS00995 0ca4ad026358f909dadfd7fa05069e38 403 PIRSF PIRSF001259 4 402 7.2E-134 T 23-04-2016 SD28_RS00995 0ca4ad026358f909dadfd7fa05069e38 403 Gene3D G3DSA:3.90.870.10 7 215 1.9E-86 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain SD28_RS00995 0ca4ad026358f909dadfd7fa05069e38 403 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 11 203 9.4E-77 T 23-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 SD28_RS00995 0ca4ad026358f909dadfd7fa05069e38 403 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 7 204 8.1E-72 T 23-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 SD28_RS00995 0ca4ad026358f909dadfd7fa05069e38 403 SUPERFAMILY SSF142695 211 370 1.2E-44 T 23-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 SD28_RS00995 0ca4ad026358f909dadfd7fa05069e38 403 SUPERFAMILY SSF55821 3 207 2.04E-76 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain SD28_RS00995 0ca4ad026358f909dadfd7fa05069e38 403 PANTHER PTHR21327 7 400 1.4E-172 T 23-04-2016 SD28_RS00995 0ca4ad026358f909dadfd7fa05069e38 403 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 4 208 36.813 T 23-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 SD28_RS00995 0ca4ad026358f909dadfd7fa05069e38 403 Pfam PF00925 GTP cyclohydrolase II 218 370 6.3E-51 T 23-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 SD28_RS03505 e84086e87acf586b79943356d1b524fd 411 PANTHER PTHR23521:SF2 4 381 5.4E-75 T 23-04-2016 SD28_RS03505 e84086e87acf586b79943356d1b524fd 411 Pfam PF07690 Major Facilitator Superfamily 15 229 1.6E-9 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS03505 e84086e87acf586b79943356d1b524fd 411 Pfam PF07690 Major Facilitator Superfamily 233 382 2.2E-18 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS03505 e84086e87acf586b79943356d1b524fd 411 PANTHER PTHR23521 4 381 5.4E-75 T 23-04-2016 SD28_RS03505 e84086e87acf586b79943356d1b524fd 411 Gene3D G3DSA:1.20.1250.20 13 180 1.8E-10 T 23-04-2016 SD28_RS03505 e84086e87acf586b79943356d1b524fd 411 Gene3D G3DSA:1.20.1250.20 201 374 3.5E-22 T 23-04-2016 SD28_RS03505 e84086e87acf586b79943356d1b524fd 411 SUPERFAMILY SSF103473 14 379 3.53E-37 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS03295 3a9bbf3959961e40ce6e3a1eca940a77 328 SUPERFAMILY SSF51569 5 264 3.11E-49 T 23-04-2016 SD28_RS03295 3a9bbf3959961e40ce6e3a1eca940a77 328 Pfam PF00682 HMGL-like 7 246 9.6E-32 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 SD28_RS03295 3a9bbf3959961e40ce6e3a1eca940a77 328 PANTHER PTHR10277:SF3 5 318 3.5E-36 T 23-04-2016 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 SD28_RS03295 3a9bbf3959961e40ce6e3a1eca940a77 328 PANTHER PTHR10277 5 318 3.5E-36 T 23-04-2016 SD28_RS03295 3a9bbf3959961e40ce6e3a1eca940a77 328 Gene3D G3DSA:3.20.20.70 5 264 2.6E-43 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS05965 bd869a8b75201a09fb4fb9988e5f4010 617 Gene3D G3DSA:3.40.50.300 311 546 9.0E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05965 bd869a8b75201a09fb4fb9988e5f4010 617 SUPERFAMILY SSF52540 301 518 5.33E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05965 bd869a8b75201a09fb4fb9988e5f4010 617 SUPERFAMILY SSF52540 3 237 5.49E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05965 bd869a8b75201a09fb4fb9988e5f4010 617 PANTHER PTHR19211:SF45 1 559 9.1E-203 T 23-04-2016 SD28_RS05965 bd869a8b75201a09fb4fb9988e5f4010 617 Gene3D G3DSA:3.40.50.300 4 276 9.8E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05965 bd869a8b75201a09fb4fb9988e5f4010 617 Pfam PF12848 ABC transporter 218 290 9.7E-13 T 23-04-2016 IPR032781 ABC-transporter extension domain SD28_RS05965 bd869a8b75201a09fb4fb9988e5f4010 617 Pfam PF00005 ABC transporter 330 463 1.4E-21 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS05965 bd869a8b75201a09fb4fb9988e5f4010 617 Pfam PF00005 ABC transporter 19 179 1.4E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS05965 bd869a8b75201a09fb4fb9988e5f4010 617 SMART SM00382 338 508 4.0E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS05965 bd869a8b75201a09fb4fb9988e5f4010 617 SMART SM00382 28 224 1.8E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS05965 bd869a8b75201a09fb4fb9988e5f4010 617 Pfam PF16326 ABC transporter C-terminal domain 546 613 5.4E-16 T 23-04-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 SD28_RS05965 bd869a8b75201a09fb4fb9988e5f4010 617 PANTHER PTHR19211 1 559 9.1E-203 T 23-04-2016 SD28_RS05965 bd869a8b75201a09fb4fb9988e5f4010 617 ProSitePatterns PS00211 ABC transporters family signature. 435 449 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS05965 bd869a8b75201a09fb4fb9988e5f4010 617 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS02195 bd4bff2983d48374ea3f8a5381b6509b 189 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 5 185 2.3E-18 T 23-04-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 SD28_RS02195 bd4bff2983d48374ea3f8a5381b6509b 189 PANTHER PTHR36122 1 185 3.1E-15 T 23-04-2016 SD28_RS02195 bd4bff2983d48374ea3f8a5381b6509b 189 Pfam PF04973 Nicotinamide mononucleotide transporter 5 181 1.8E-28 T 23-04-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 SD28_RS04215 c7cc1974b5989b2082d980280d7e2d53 81 Gene3D G3DSA:3.30.70.20 4 76 4.8E-17 T 23-04-2016 SD28_RS04215 c7cc1974b5989b2082d980280d7e2d53 81 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SD28_RS04215 c7cc1974b5989b2082d980280d7e2d53 81 PANTHER PTHR24960:SF38 1 77 7.0E-25 T 23-04-2016 SD28_RS04215 c7cc1974b5989b2082d980280d7e2d53 81 PANTHER PTHR24960 1 77 7.0E-25 T 23-04-2016 SD28_RS04215 c7cc1974b5989b2082d980280d7e2d53 81 Pfam PF00037 4Fe-4S binding domain 5 25 4.7E-6 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SD28_RS04215 c7cc1974b5989b2082d980280d7e2d53 81 SUPERFAMILY SSF54862 5 74 1.43E-17 T 23-04-2016 SD28_RS00410 afcc0e269b12e02309ba952ea8d5884c 328 PANTHER PTHR30160:SF13 1 321 7.7E-81 T 23-04-2016 SD28_RS00410 afcc0e269b12e02309ba952ea8d5884c 328 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 325 35.973 T 23-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 SD28_RS00410 afcc0e269b12e02309ba952ea8d5884c 328 Gene3D G3DSA:3.40.50.300 42 117 6.2E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00410 afcc0e269b12e02309ba952ea8d5884c 328 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 15 321 1.9E-83 T 23-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 SD28_RS00410 afcc0e269b12e02309ba952ea8d5884c 328 PANTHER PTHR30160 1 321 7.7E-81 T 23-04-2016 SD28_RS00410 afcc0e269b12e02309ba952ea8d5884c 328 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 15 322 1.0E-96 T 23-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 SD28_RS00410 afcc0e269b12e02309ba952ea8d5884c 328 SUPERFAMILY SSF52540 45 165 1.08E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06635 e08ef8e636677c31c20a3ce531844c29 316 PANTHER PTHR10366 10 312 1.7E-72 T 23-04-2016 SD28_RS06635 e08ef8e636677c31c20a3ce531844c29 316 PANTHER PTHR10366:SF259 10 312 1.7E-72 T 23-04-2016 SD28_RS06635 e08ef8e636677c31c20a3ce531844c29 316 SUPERFAMILY SSF51735 8 312 3.43E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06635 e08ef8e636677c31c20a3ce531844c29 316 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 8 311 41.81 T 23-04-2016 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00010+1.1.1.27|KEGG: 00051+1.1.1.271|KEGG: 00270+1.1.1.27|KEGG: 00520+1.1.1.271|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-66|MetaCyc: PWY-6901|UniPathway: UPA00128 SD28_RS06635 e08ef8e636677c31c20a3ce531844c29 316 Gene3D G3DSA:3.90.25.10 178 214 2.3E-27 T 23-04-2016 SD28_RS06635 e08ef8e636677c31c20a3ce531844c29 316 Gene3D G3DSA:3.90.25.10 256 302 2.3E-27 T 23-04-2016 SD28_RS06635 e08ef8e636677c31c20a3ce531844c29 316 Pfam PF01370 NAD dependent epimerase/dehydratase family 11 243 2.9E-60 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 SD28_RS06635 e08ef8e636677c31c20a3ce531844c29 316 Gene3D G3DSA:3.40.50.720 215 255 8.2E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06635 e08ef8e636677c31c20a3ce531844c29 316 Gene3D G3DSA:3.40.50.720 4 177 8.2E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05670 14d44f7a4c7b81a99b9464f9cc10d7cd 335 SUPERFAMILY SSF54060 99 317 5.59E-64 T 23-04-2016 SD28_RS05670 14d44f7a4c7b81a99b9464f9cc10d7cd 335 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 184 192 - T 23-04-2016 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 SD28_RS05670 14d44f7a4c7b81a99b9464f9cc10d7cd 335 PANTHER PTHR13966 122 318 4.1E-50 T 23-04-2016 SD28_RS05670 14d44f7a4c7b81a99b9464f9cc10d7cd 335 SMART SM00477 125 319 2.6E-46 T 23-04-2016 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 SD28_RS05670 14d44f7a4c7b81a99b9464f9cc10d7cd 335 Pfam PF01223 DNA/RNA non-specific endonuclease 110 315 2.6E-51 T 23-04-2016 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 SD28_RS05670 14d44f7a4c7b81a99b9464f9cc10d7cd 335 Gene3D G3DSA:3.40.570.10 103 318 1.2E-65 T 23-04-2016 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 SD28_RS05670 14d44f7a4c7b81a99b9464f9cc10d7cd 335 SMART SM00892 124 319 1.9E-57 T 23-04-2016 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 SD28_RS06185 92ae99eae3d4e92d30dc45164bb8c050 216 SMART SM00983 143 201 7.1E-12 T 23-04-2016 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|UniPathway: UPA00060 SD28_RS06185 92ae99eae3d4e92d30dc45164bb8c050 216 SUPERFAMILY SSF63999 4 128 2.75E-22 T 23-04-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356 SD28_RS06185 92ae99eae3d4e92d30dc45164bb8c050 216 Gene3D G3DSA:3.40.50.10240 2 122 1.0E-18 T 23-04-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356 SD28_RS06185 92ae99eae3d4e92d30dc45164bb8c050 216 TIGRFAM TIGR01378 thi_PPkinase: thiamine pyrophosphokinase 6 201 1.8E-28 T 23-04-2016 IPR006282 Thiamin pyrophosphokinase GO:0004788|GO:0006772 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|UniPathway: UPA00060 SD28_RS06185 92ae99eae3d4e92d30dc45164bb8c050 216 Pfam PF04263 Thiamin pyrophosphokinase, catalytic domain 30 120 1.9E-13 T 23-04-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356 SD28_RS06185 92ae99eae3d4e92d30dc45164bb8c050 216 Gene3D G3DSA:2.60.120.320 125 199 3.2E-7 T 23-04-2016 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|UniPathway: UPA00060 SD28_RS06185 92ae99eae3d4e92d30dc45164bb8c050 216 Pfam PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain 145 198 8.4E-8 T 23-04-2016 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|UniPathway: UPA00060 SD28_RS06185 92ae99eae3d4e92d30dc45164bb8c050 216 SUPERFAMILY SSF63862 132 204 1.83E-8 T 23-04-2016 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|UniPathway: UPA00060 SD28_RS06185 92ae99eae3d4e92d30dc45164bb8c050 216 PANTHER PTHR13622 4 214 8.3E-13 T 23-04-2016 SD28_RS06150 a6c0f15f3a9c3f18bf073c4c6d13ab67 239 Gene3D G3DSA:3.40.50.1580 12 236 4.7E-65 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 SD28_RS06150 a6c0f15f3a9c3f18bf073c4c6d13ab67 239 Pfam PF01048 Phosphorylase superfamily 18 227 6.2E-35 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 SD28_RS06150 a6c0f15f3a9c3f18bf073c4c6d13ab67 239 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 6 235 4.5E-76 T 23-04-2016 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 SD28_RS06150 a6c0f15f3a9c3f18bf073c4c6d13ab67 239 PANTHER PTHR21234 4 233 2.5E-48 T 23-04-2016 IPR018017 Nucleoside phosphorylase SD28_RS06150 a6c0f15f3a9c3f18bf073c4c6d13ab67 239 SUPERFAMILY SSF53167 4 236 1.96E-71 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 SD28_RS06150 a6c0f15f3a9c3f18bf073c4c6d13ab67 239 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 64 79 - T 23-04-2016 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 SD28_RS06810 c00359abb7c19ee47da8cceb9904f3a3 738 PIRSF PIRSF009407 1 738 0.0 T 23-04-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 SD28_RS06810 c00359abb7c19ee47da8cceb9904f3a3 738 PANTHER PTHR36999 1 738 0.0 T 23-04-2016 SD28_RS06810 c00359abb7c19ee47da8cceb9904f3a3 738 SUPERFAMILY SSF53659 2 737 0.0 T 23-04-2016 SD28_RS06810 c00359abb7c19ee47da8cceb9904f3a3 738 Gene3D G3DSA:3.40.718.10 170 285 1.3E-33 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 SD28_RS06810 c00359abb7c19ee47da8cceb9904f3a3 738 Gene3D G3DSA:3.40.718.10 337 360 1.3E-33 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 SD28_RS06810 c00359abb7c19ee47da8cceb9904f3a3 738 Gene3D G3DSA:3.40.718.10 536 642 1.3E-33 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 SD28_RS06810 c00359abb7c19ee47da8cceb9904f3a3 738 Pfam PF03971 Monomeric isocitrate dehydrogenase 3 735 0.0 T 23-04-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 SD28_RS06810 c00359abb7c19ee47da8cceb9904f3a3 738 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 2 737 0.0 T 23-04-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 SD28_RS01030 e43e5ae603ec8a620eae905b8948be50 187 Pfam PF09419 Mitochondrial PGP phosphatase 26 161 1.9E-11 T 23-04-2016 IPR027706 Mitochondrial PGP phosphatase KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 SD28_RS01030 e43e5ae603ec8a620eae905b8948be50 187 PANTHER PTHR19288:SF25 29 176 3.7E-17 T 23-04-2016 SD28_RS01030 e43e5ae603ec8a620eae905b8948be50 187 SUPERFAMILY SSF56784 44 162 6.74E-14 T 23-04-2016 IPR023214 HAD-like domain SD28_RS01030 e43e5ae603ec8a620eae905b8948be50 187 Gene3D G3DSA:3.40.50.1000 30 161 6.7E-12 T 23-04-2016 IPR023214 HAD-like domain SD28_RS01030 e43e5ae603ec8a620eae905b8948be50 187 PANTHER PTHR19288 29 176 3.7E-17 T 23-04-2016 SD28_RS03625 24822342286f9aaa11e812c60038ffbf 245 PANTHER PTHR13939 3 220 2.8E-49 T 23-04-2016 SD28_RS03625 24822342286f9aaa11e812c60038ffbf 245 Pfam PF00994 Probable molybdopterin binding domain 6 166 2.3E-25 T 23-04-2016 IPR001453 MoaB/Mog domain SD28_RS03625 24822342286f9aaa11e812c60038ffbf 245 SMART SM00852 6 174 6.2E-25 T 23-04-2016 IPR001453 MoaB/Mog domain SD28_RS03625 24822342286f9aaa11e812c60038ffbf 245 PANTHER PTHR13939:SF0 3 220 2.8E-49 T 23-04-2016 SD28_RS03625 24822342286f9aaa11e812c60038ffbf 245 Gene3D G3DSA:3.40.980.10 4 203 5.3E-25 T 23-04-2016 IPR001453 MoaB/Mog domain SD28_RS03625 24822342286f9aaa11e812c60038ffbf 245 SUPERFAMILY SSF53218 5 193 5.23E-29 T 23-04-2016 IPR001453 MoaB/Mog domain SD28_RS06710 13105701aaaed60cb9b0551520fff4de 416 TIGRFAM TIGR04370 glyco_rpt_poly: oligosaccharide repeat unit polymerase 4 402 1.4E-14 T 23-04-2016 SD28_RS06040 9a4422bab059249866498aeccbe13268 308 Pfam PF00698 Acyl transferase domain 8 284 1.9E-32 T 23-04-2016 IPR014043 Acyl transferase SD28_RS06040 9a4422bab059249866498aeccbe13268 308 Gene3D G3DSA:3.40.366.10 3 123 3.9E-66 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 SD28_RS06040 9a4422bab059249866498aeccbe13268 308 Gene3D G3DSA:3.40.366.10 198 300 3.9E-66 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 SD28_RS06040 9a4422bab059249866498aeccbe13268 308 PANTHER PTHR10982 3 307 6.8E-121 T 23-04-2016 SD28_RS06040 9a4422bab059249866498aeccbe13268 308 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 4 292 4.3E-100 T 23-04-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 SD28_RS06040 9a4422bab059249866498aeccbe13268 308 Gene3D G3DSA:3.30.70.250 128 197 3.7E-26 T 23-04-2016 SD28_RS06040 9a4422bab059249866498aeccbe13268 308 SUPERFAMILY SSF52151 5 123 5.23E-69 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 SD28_RS06040 9a4422bab059249866498aeccbe13268 308 SUPERFAMILY SSF52151 191 306 5.23E-69 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 SD28_RS06040 9a4422bab059249866498aeccbe13268 308 SUPERFAMILY SSF55048 132 198 3.4E-15 T 23-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 SD28_RS06040 9a4422bab059249866498aeccbe13268 308 PIRSF PIRSF000446 1 308 2.7E-103 T 23-04-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388|UniPathway: UPA00094 SD28_RS06040 9a4422bab059249866498aeccbe13268 308 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 8 306 3.1E-24 T 23-04-2016 IPR020801 Polyketide synthase, acyl transferase domain SD28_RS05505 02100515c7f0e1692213764005e7be37 581 PRINTS PR00811 Bacterial general secretion pathway protein D signature 540 558 5.9E-17 T 23-04-2016 IPR001775 GspD/PilQ family SD28_RS05505 02100515c7f0e1692213764005e7be37 581 PRINTS PR00811 Bacterial general secretion pathway protein D signature 346 356 5.9E-17 T 23-04-2016 IPR001775 GspD/PilQ family SD28_RS05505 02100515c7f0e1692213764005e7be37 581 PRINTS PR00811 Bacterial general secretion pathway protein D signature 410 434 5.9E-17 T 23-04-2016 IPR001775 GspD/PilQ family SD28_RS05505 02100515c7f0e1692213764005e7be37 581 PRINTS PR00811 Bacterial general secretion pathway protein D signature 563 577 5.9E-17 T 23-04-2016 IPR001775 GspD/PilQ family SD28_RS05505 02100515c7f0e1692213764005e7be37 581 Pfam PF03958 Bacterial type II/III secretion system short domain 279 346 4.1E-14 T 23-04-2016 IPR005644 NolW-like SD28_RS05505 02100515c7f0e1692213764005e7be37 581 Pfam PF00263 Bacterial type II and III secretion system protein 414 575 5.6E-47 T 23-04-2016 IPR004846 Type II/III secretion system GO:0009306 SD28_RS05505 02100515c7f0e1692213764005e7be37 581 PANTHER PTHR30604 112 581 6.0E-84 T 23-04-2016 SD28_RS05505 02100515c7f0e1692213764005e7be37 581 SMART SM00965 205 253 1.2E-4 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 SD28_RS05505 02100515c7f0e1692213764005e7be37 581 PRINTS PR01032 Gene IV protein signature 435 458 4.3E-8 T 23-04-2016 SD28_RS05505 02100515c7f0e1692213764005e7be37 581 PRINTS PR01032 Gene IV protein signature 394 417 4.3E-8 T 23-04-2016 SD28_RS05505 02100515c7f0e1692213764005e7be37 581 PRINTS PR01032 Gene IV protein signature 503 531 4.3E-8 T 23-04-2016 SD28_RS05505 02100515c7f0e1692213764005e7be37 581 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 521 554 - T 23-04-2016 IPR004845 Type II secretion system GspD, conserved site GO:0008565 SD28_RS01290 d6218e10fecf50a3a6bee90da3ea2e6d 328 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 193 215 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site SD28_RS01290 d6218e10fecf50a3a6bee90da3ea2e6d 328 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 296 1.8E-51 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 SD28_RS01290 d6218e10fecf50a3a6bee90da3ea2e6d 328 PANTHER PTHR10996:SF161 1 325 1.5E-141 T 23-04-2016 SD28_RS01290 d6218e10fecf50a3a6bee90da3ea2e6d 328 SUPERFAMILY SSF52283 2 133 1.32E-40 T 23-04-2016 SD28_RS01290 d6218e10fecf50a3a6bee90da3ea2e6d 328 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 145 172 - T 23-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 SD28_RS01290 d6218e10fecf50a3a6bee90da3ea2e6d 328 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 315 5.8E-27 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 SD28_RS01290 d6218e10fecf50a3a6bee90da3ea2e6d 328 PANTHER PTHR10996 1 325 1.5E-141 T 23-04-2016 SD28_RS01290 d6218e10fecf50a3a6bee90da3ea2e6d 328 Gene3D G3DSA:3.40.50.720 3 116 4.5E-30 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS01290 d6218e10fecf50a3a6bee90da3ea2e6d 328 SUPERFAMILY SSF51735 100 297 4.89E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS01290 d6218e10fecf50a3a6bee90da3ea2e6d 328 Gene3D G3DSA:3.40.50.720 117 299 1.7E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 259 285 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 Gene3D G3DSA:1.10.601.10 22 128 4.0E-33 T 23-04-2016 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 85 98 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 23 290 3.5E-109 T 23-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 SUPERFAMILY SSF88946 19 130 4.71E-38 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 10 291 49.8 T 23-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 Pfam PF04542 Sigma-70 region 2 61 130 2.0E-17 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 PRINTS PR00046 Major sigma-70 factor signature 240 252 4.4E-16 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 PRINTS PR00046 Major sigma-70 factor signature 259 274 4.4E-16 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 PRINTS PR00046 Major sigma-70 factor signature 274 285 4.4E-16 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 PRINTS PR00046 Major sigma-70 factor signature 85 98 4.4E-16 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 PANTHER PTHR30376 10 289 6.4E-95 T 23-04-2016 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 56 288 3.6E-26 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 Pfam PF04545 Sigma-70, region 4 237 287 5.5E-12 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 SUPERFAMILY SSF88659 198 291 1.31E-13 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 PIRSF PIRSF000770 4 291 4.2E-32 T 23-04-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 SD28_RS03725 ea3521c1bcd973812aadd75edbe79de1 293 Gene3D G3DSA:1.10.10.10 233 290 1.2E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS02815 8c9c350250b82a8bb96324420802c2be 314 Gene3D G3DSA:3.40.50.150 109 288 1.6E-51 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS02815 8c9c350250b82a8bb96324420802c2be 314 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 16 305 1.6E-78 T 23-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 SD28_RS02815 8c9c350250b82a8bb96324420802c2be 314 PANTHER PTHR18895:SF66 9 301 3.5E-123 T 23-04-2016 SD28_RS02815 8c9c350250b82a8bb96324420802c2be 314 SUPERFAMILY SSF53335 29 275 8.01E-47 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS02815 8c9c350250b82a8bb96324420802c2be 314 PIRSF PIRSF037167 1 310 5.1E-133 T 23-04-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 SD28_RS02815 8c9c350250b82a8bb96324420802c2be 314 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 7 303 49.904 T 23-04-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 SD28_RS02815 8c9c350250b82a8bb96324420802c2be 314 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 207 213 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 SD28_RS02815 8c9c350250b82a8bb96324420802c2be 314 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 14 297 5.8E-123 T 23-04-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 SD28_RS02815 8c9c350250b82a8bb96324420802c2be 314 Pfam PF05175 Methyltransferase small domain 136 218 1.5E-18 T 23-04-2016 IPR007848 Methyltransferase small domain GO:0008168 SD28_RS02815 8c9c350250b82a8bb96324420802c2be 314 PANTHER PTHR18895 9 301 3.5E-123 T 23-04-2016 SD28_RS02355 c9522164744efb8a92940c5e063565f3 83 Pfam PF00366 Ribosomal protein S17 10 76 1.5E-29 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02355 c9522164744efb8a92940c5e063565f3 83 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 6 76 6.0E-33 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02355 c9522164744efb8a92940c5e063565f3 83 PANTHER PTHR10744:SF1 1 82 1.7E-28 T 23-04-2016 SD28_RS02355 c9522164744efb8a92940c5e063565f3 83 PANTHER PTHR10744 1 82 1.7E-28 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02355 c9522164744efb8a92940c5e063565f3 83 SUPERFAMILY SSF50249 6 81 1.07E-29 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS02355 c9522164744efb8a92940c5e063565f3 83 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 4.3E-34 T 23-04-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02355 c9522164744efb8a92940c5e063565f3 83 Gene3D G3DSA:2.40.50.140 6 81 2.3E-31 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS02355 c9522164744efb8a92940c5e063565f3 83 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 1.8E-11 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02355 c9522164744efb8a92940c5e063565f3 83 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 1.8E-11 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02355 c9522164744efb8a92940c5e063565f3 83 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 1.8E-11 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02355 c9522164744efb8a92940c5e063565f3 83 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 3 81 23.909 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS01880 721ddc2188b6284139b73687c2678ee8 504 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 305 326 - T 23-04-2016 IPR021115 Pyridoxal-phosphate binding site GO:0016831 SD28_RS01880 721ddc2188b6284139b73687c2678ee8 504 PANTHER PTHR11999:SF106 14 498 7.4E-167 T 23-04-2016 SD28_RS01880 721ddc2188b6284139b73687c2678ee8 504 SUPERFAMILY SSF53383 41 488 9.89E-99 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS01880 721ddc2188b6284139b73687c2678ee8 504 Gene3D G3DSA:3.40.640.10 95 373 2.9E-89 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS01880 721ddc2188b6284139b73687c2678ee8 504 Gene3D G3DSA:3.90.1150.10 374 491 9.8E-25 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS01880 721ddc2188b6284139b73687c2678ee8 504 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 63 416 8.0E-57 T 23-04-2016 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 SD28_RS01880 721ddc2188b6284139b73687c2678ee8 504 PANTHER PTHR11999 14 498 7.4E-167 T 23-04-2016 SD28_RS01270 759687e13da5ae3cf3cc17abadf9da9a 239 SUPERFAMILY SSF56219 11 236 1.2E-27 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase SD28_RS01270 759687e13da5ae3cf3cc17abadf9da9a 239 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 17 229 1.2E-14 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase SD28_RS01270 759687e13da5ae3cf3cc17abadf9da9a 239 Gene3D G3DSA:3.60.10.10 11 205 3.3E-15 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase SD28_RS03530 315b87f209e0be842e17194231cff396 352 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 SD28_RS03530 315b87f209e0be842e17194231cff396 352 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 1 349 57.339 T 23-04-2016 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00260+1.1.1.103|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7378|UniPathway: UPA00046 SD28_RS03530 315b87f209e0be842e17194231cff396 352 SMART SM00829 12 347 0.0024 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 SD28_RS03530 315b87f209e0be842e17194231cff396 352 PANTHER PTHR11695:SF285 13 351 4.6E-130 T 23-04-2016 SD28_RS03530 315b87f209e0be842e17194231cff396 352 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 3 349 7.7E-151 T 23-04-2016 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00260+1.1.1.103|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7378|UniPathway: UPA00046 SD28_RS03530 315b87f209e0be842e17194231cff396 352 Gene3D G3DSA:3.40.50.720 174 296 1.9E-30 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS03530 315b87f209e0be842e17194231cff396 352 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 136 2.0E-32 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 SD28_RS03530 315b87f209e0be842e17194231cff396 352 PANTHER PTHR11695 13 351 4.6E-130 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 SD28_RS03530 315b87f209e0be842e17194231cff396 352 Pfam PF00107 Zinc-binding dehydrogenase 175 309 4.4E-23 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 SD28_RS03530 315b87f209e0be842e17194231cff396 352 SUPERFAMILY SSF50129 2 174 1.29E-51 T 23-04-2016 IPR011032 GroES-like SD28_RS03530 315b87f209e0be842e17194231cff396 352 SUPERFAMILY SSF51735 142 314 2.22E-31 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS03530 315b87f209e0be842e17194231cff396 352 Gene3D G3DSA:3.90.180.10 1 173 1.4E-48 T 23-04-2016 IPR011032 GroES-like SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 PRINTS PR00662 Glucose-6-phosphate isomerase signature 472 486 6.1E-54 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 PRINTS PR00662 Glucose-6-phosphate isomerase signature 250 268 6.1E-54 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 PRINTS PR00662 Glucose-6-phosphate isomerase signature 454 472 6.1E-54 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 PRINTS PR00662 Glucose-6-phosphate isomerase signature 486 499 6.1E-54 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 PRINTS PR00662 Glucose-6-phosphate isomerase signature 327 348 6.1E-54 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 PRINTS PR00662 Glucose-6-phosphate isomerase signature 138 157 6.1E-54 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 34 513 39.441 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 SUPERFAMILY SSF53697 11 533 1.58E-192 T 23-04-2016 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 486 503 - T 23-04-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 PANTHER PTHR11469:SF4 8 533 1.1E-252 T 23-04-2016 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 254 267 - T 23-04-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 Gene3D G3DSA:3.40.50.10490 135 173 5.7E-147 T 23-04-2016 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 Gene3D G3DSA:3.40.50.10490 252 490 5.7E-147 T 23-04-2016 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 Gene3D G3DSA:3.40.50.10490 10 90 5.7E-147 T 23-04-2016 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 Pfam PF00342 Phosphoglucose isomerase 40 532 4.0E-198 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 PANTHER PTHR11469 8 533 1.1E-252 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 SD28_RS06180 f035c1eeebfb33ca875bbdd8d794bcb5 537 Gene3D G3DSA:1.10.1390.10 491 535 1.9E-14 T 23-04-2016 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 SD28_RS03815 63184200dbc5f2e5195062b8d2b5ace0 434 Pfam PF01926 50S ribosome-binding GTPase 204 322 3.7E-21 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS03815 63184200dbc5f2e5195062b8d2b5ace0 434 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 12 366 3.1E-144 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 SD28_RS03815 63184200dbc5f2e5195062b8d2b5ace0 434 SUPERFAMILY SSF52540 201 373 8.09E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03815 63184200dbc5f2e5195062b8d2b5ace0 434 Hamap MF_00900 GTPase HflX [hflX]. 30 397 44.744 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 SD28_RS03815 63184200dbc5f2e5195062b8d2b5ace0 434 Pfam PF13167 GTP-binding GTPase N-terminal 30 114 1.7E-24 T 23-04-2016 IPR025121 GTPase HflX, N-terminal SD28_RS03815 63184200dbc5f2e5195062b8d2b5ace0 434 PANTHER PTHR10229:SF0 1 432 1.8E-156 T 23-04-2016 SD28_RS03815 63184200dbc5f2e5195062b8d2b5ace0 434 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 204 224 1.1E-8 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS03815 63184200dbc5f2e5195062b8d2b5ace0 434 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 225 243 1.1E-8 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS03815 63184200dbc5f2e5195062b8d2b5ace0 434 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 271 289 1.1E-8 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS03815 63184200dbc5f2e5195062b8d2b5ace0 434 PIRSF PIRSF006809 5 427 1.3E-143 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 SD28_RS03815 63184200dbc5f2e5195062b8d2b5ace0 434 Gene3D G3DSA:3.40.50.300 200 369 6.1E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03815 63184200dbc5f2e5195062b8d2b5ace0 434 Pfam PF16360 GTP-binding GTPase Middle Region 117 196 4.1E-31 T 23-04-2016 IPR032305 GTP-binding protein, middle domain SD28_RS03815 63184200dbc5f2e5195062b8d2b5ace0 434 PANTHER PTHR10229 1 432 1.8E-156 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 SD28_RS06430 c11090ef53ea74f4008913135819511b 658 Gene3D G3DSA:1.25.20.10 26 385 1.3E-67 T 23-04-2016 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 SD28_RS06430 c11090ef53ea74f4008913135819511b 658 SUPERFAMILY SSF48435 25 480 7.32E-88 T 23-04-2016 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 SD28_RS06430 c11090ef53ea74f4008913135819511b 658 Gene3D G3DSA:1.10.530.10 479 635 1.2E-38 T 23-04-2016 SD28_RS06430 c11090ef53ea74f4008913135819511b 658 PANTHER PTHR21666 466 632 3.8E-37 T 23-04-2016 SD28_RS06430 c11090ef53ea74f4008913135819511b 658 Pfam PF01464 Transglycosylase SLT domain 487 601 1.2E-21 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 SD28_RS06430 c11090ef53ea74f4008913135819511b 658 SUPERFAMILY SSF53955 483 634 8.44E-34 T 23-04-2016 IPR023346 Lysozyme-like domain SD28_RS00255 2daee235953cfb8506ae2d9447f904fc 368 PANTHER PTHR30035 9 235 2.9E-32 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 SD28_RS00255 2daee235953cfb8506ae2d9447f904fc 368 Pfam PF04333 MlaA lipoprotein 30 234 6.5E-56 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 SD28_RS00255 2daee235953cfb8506ae2d9447f904fc 368 PANTHER PTHR30035:SF3 9 235 2.9E-32 T 23-04-2016 SD28_RS00255 2daee235953cfb8506ae2d9447f904fc 368 PRINTS PR01805 VacJ lipoprotein signature 31 44 8.6E-9 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 SD28_RS00255 2daee235953cfb8506ae2d9447f904fc 368 PRINTS PR01805 VacJ lipoprotein signature 98 115 8.6E-9 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 SD28_RS05120 db568e2eb4439134ae2e40834b229662 439 Gene3D G3DSA:3.40.50.300 3 212 1.9E-79 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05120 db568e2eb4439134ae2e40834b229662 439 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 23-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site SD28_RS05120 db568e2eb4439134ae2e40834b229662 439 Pfam PF00270 DEAD/DEAH box helicase 27 197 7.4E-50 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SD28_RS05120 db568e2eb4439134ae2e40834b229662 439 PANTHER PTHR24031 2 365 2.8E-175 T 23-04-2016 SD28_RS05120 db568e2eb4439134ae2e40834b229662 439 PANTHER PTHR24031:SF0 2 365 2.8E-175 T 23-04-2016 SD28_RS05120 db568e2eb4439134ae2e40834b229662 439 Gene3D G3DSA:3.40.50.300 213 374 2.7E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05120 db568e2eb4439134ae2e40834b229662 439 SMART SM00490 259 340 1.3E-29 T 23-04-2016 IPR001650 Helicase, C-terminal SD28_RS05120 db568e2eb4439134ae2e40834b229662 439 SMART SM00487 22 223 8.3E-63 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain SD28_RS05120 db568e2eb4439134ae2e40834b229662 439 Pfam PF00271 Helicase conserved C-terminal domain 232 340 1.4E-26 T 23-04-2016 IPR001650 Helicase, C-terminal SD28_RS05120 db568e2eb4439134ae2e40834b229662 439 SUPERFAMILY SSF52540 76 360 1.43E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01975 49832cdfe4e5405746be54656ce83334 215 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 9 190 31.11 T 23-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 SD28_RS01975 49832cdfe4e5405746be54656ce83334 215 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 143 164 - T 23-04-2016 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 SD28_RS01975 49832cdfe4e5405746be54656ce83334 215 PANTHER PTHR10884 40 66 5.6E-59 T 23-04-2016 SD28_RS01975 49832cdfe4e5405746be54656ce83334 215 PANTHER PTHR10884 96 202 5.6E-59 T 23-04-2016 SD28_RS01975 49832cdfe4e5405746be54656ce83334 215 PANTHER PTHR10884:SF10 40 66 5.6E-59 T 23-04-2016 SD28_RS01975 49832cdfe4e5405746be54656ce83334 215 PANTHER PTHR10884:SF10 96 202 5.6E-59 T 23-04-2016 SD28_RS01975 49832cdfe4e5405746be54656ce83334 215 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 109 170 2.0E-29 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 SD28_RS01975 49832cdfe4e5405746be54656ce83334 215 SUPERFAMILY SSF143243 9 206 1.57E-50 T 23-04-2016 SD28_RS01975 49832cdfe4e5405746be54656ce83334 215 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 37 183 9.3E-41 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 SD28_RS06695 c36d99dafc25088c294bfcc4b837cc51 287 PANTHER PTHR10366:SF466 3 271 3.6E-44 T 23-04-2016 SD28_RS06695 c36d99dafc25088c294bfcc4b837cc51 287 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 225 5.1E-42 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 SD28_RS06695 c36d99dafc25088c294bfcc4b837cc51 287 PANTHER PTHR10366 3 271 3.6E-44 T 23-04-2016 SD28_RS06695 c36d99dafc25088c294bfcc4b837cc51 287 Gene3D G3DSA:3.40.50.720 2 161 2.5E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06695 c36d99dafc25088c294bfcc4b837cc51 287 Gene3D G3DSA:3.40.50.720 205 239 2.5E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06695 c36d99dafc25088c294bfcc4b837cc51 287 Gene3D G3DSA:3.90.25.10 251 282 3.2E-12 T 23-04-2016 SD28_RS06695 c36d99dafc25088c294bfcc4b837cc51 287 Gene3D G3DSA:3.90.25.10 162 204 3.2E-12 T 23-04-2016 SD28_RS06695 c36d99dafc25088c294bfcc4b837cc51 287 SUPERFAMILY SSF51735 2 281 8.24E-57 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06415 938ec0ed19ee9b98cc8583690f844b59 170 SUPERFAMILY SSF46689 27 139 9.5E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 SD28_RS06415 938ec0ed19ee9b98cc8583690f844b59 170 Pfam PF13384 Homeodomain-like domain 27 73 9.5E-6 T 23-04-2016 SD28_RS06415 938ec0ed19ee9b98cc8583690f844b59 170 Pfam PF13592 Winged helix-turn helix 110 163 3.5E-11 T 23-04-2016 IPR025959 Winged helix-turn helix domain SD28_RS05885 251101d92789ecd983c82986b48c0af7 594 PANTHER PTHR24221:SF261 8 586 2.0E-191 T 23-04-2016 SD28_RS05885 251101d92789ecd983c82986b48c0af7 594 Gene3D G3DSA:1.20.1560.10 16 340 6.2E-39 T 23-04-2016 SD28_RS05885 251101d92789ecd983c82986b48c0af7 594 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 26 562 1.4E-170 T 23-04-2016 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 SD28_RS05885 251101d92789ecd983c82986b48c0af7 594 SMART SM00382 380 566 4.1E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS05885 251101d92789ecd983c82986b48c0af7 594 SUPERFAMILY SSF52540 349 589 1.78E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05885 251101d92789ecd983c82986b48c0af7 594 Pfam PF00005 ABC transporter 372 520 7.7E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS05885 251101d92789ecd983c82986b48c0af7 594 Gene3D G3DSA:3.40.50.300 356 590 6.9E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05885 251101d92789ecd983c82986b48c0af7 594 SUPERFAMILY SSF90123 12 340 1.02E-44 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 SD28_RS05885 251101d92789ecd983c82986b48c0af7 594 PANTHER PTHR24221 8 586 2.0E-191 T 23-04-2016 SD28_RS05885 251101d92789ecd983c82986b48c0af7 594 Pfam PF00664 ABC transporter transmembrane region 32 282 1.8E-26 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 SD28_RS05885 251101d92789ecd983c82986b48c0af7 594 ProSitePatterns PS00211 ABC transporters family signature. 492 506 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 Gene3D G3DSA:1.10.3370.10 2 436 1.6E-153 T 23-04-2016 IPR023201 SecY subunit domain SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 ProSitePatterns PS00756 Protein secY signature 2. 168 185 - T 23-04-2016 IPR030659 SecY conserved site SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 PANTHER PTHR10906 11 437 1.2E-196 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 SUPERFAMILY SSF103491 4 423 2.22E-124 T 23-04-2016 IPR023201 SecY subunit domain SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 Pfam PF00344 SecY translocase 73 416 2.1E-112 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 Hamap MF_01465 Protein translocase subunit SecY [secY]. 4 432 28.358 T 23-04-2016 IPR026593 Protein translocase subunit SecY SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 269 288 3.5E-96 T 23-04-2016 SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 312 334 3.5E-96 T 23-04-2016 SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 367 385 3.5E-96 T 23-04-2016 SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 175 198 3.5E-96 T 23-04-2016 SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 149 174 3.5E-96 T 23-04-2016 SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 401 419 3.5E-96 T 23-04-2016 SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 113 136 3.5E-96 T 23-04-2016 SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 72 92 3.5E-96 T 23-04-2016 SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 17 35 3.5E-96 T 23-04-2016 SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 14 428 2.8E-129 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 ProSitePatterns PS00755 Protein secY signature 1. 73 92 - T 23-04-2016 IPR030659 SecY conserved site SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 PIRSF PIRSF004557 1 439 1.4E-123 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 SD28_RS02410 4bfc4978f9f5efa1de34551a7dff87b4 442 PANTHER PTHR10906:SF2 11 437 1.2E-196 T 23-04-2016 SD28_RS04005 253b5faa2168928c83b395d108226a29 404 SUPERFAMILY SSF51905 366 397 1.04E-21 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS04005 253b5faa2168928c83b395d108226a29 404 SUPERFAMILY SSF51905 14 275 1.04E-21 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS04005 253b5faa2168928c83b395d108226a29 404 PANTHER PTHR10742 14 244 4.9E-14 T 23-04-2016 SD28_RS04005 253b5faa2168928c83b395d108226a29 404 Gene3D G3DSA:3.50.50.60 180 263 8.0E-24 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS04005 253b5faa2168928c83b395d108226a29 404 Gene3D G3DSA:3.50.50.60 10 113 8.0E-24 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS04005 253b5faa2168928c83b395d108226a29 404 Pfam PF13450 NAD(P)-binding Rossmann-like domain 17 73 3.9E-9 T 23-04-2016 SD28_RS02600 b367299eda506fe0520a5434ac00e314 125 Gene3D G3DSA:1.20.5.710 2 52 9.9E-23 T 23-04-2016 SD28_RS02600 b367299eda506fe0520a5434ac00e314 125 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 125 24.387 T 23-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02600 b367299eda506fe0520a5434ac00e314 125 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 60 99 1.0E-15 T 23-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 SD28_RS02600 b367299eda506fe0520a5434ac00e314 125 SUPERFAMILY SSF48300 3 61 1.31E-16 T 23-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02600 b367299eda506fe0520a5434ac00e314 125 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 52 3.2E-17 T 23-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02600 b367299eda506fe0520a5434ac00e314 125 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 59 125 3.7E-29 T 23-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 SD28_RS02600 b367299eda506fe0520a5434ac00e314 125 SUPERFAMILY SSF54736 54 125 2.44E-24 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like SD28_RS02600 b367299eda506fe0520a5434ac00e314 125 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 125 3.9E-46 T 23-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02600 b367299eda506fe0520a5434ac00e314 125 Gene3D G3DSA:3.30.1390.10 53 125 7.0E-32 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like SD28_RS03130 5bfe31930c51f3bc806434fe2a07fc72 238 PANTHER PTHR36112:SF1 82 236 1.8E-34 T 23-04-2016 SD28_RS03130 5bfe31930c51f3bc806434fe2a07fc72 238 PANTHER PTHR36112 82 236 1.8E-34 T 23-04-2016 SD28_RS03130 5bfe31930c51f3bc806434fe2a07fc72 238 Gene3D G3DSA:3.40.50.150 49 237 8.2E-54 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS03130 5bfe31930c51f3bc806434fe2a07fc72 238 SUPERFAMILY SSF53335 27 236 1.58E-40 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS03130 5bfe31930c51f3bc806434fe2a07fc72 238 Pfam PF04445 Putative SAM-dependent methyltransferase 26 237 2.9E-54 T 23-04-2016 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 SD28_RS03130 5bfe31930c51f3bc806434fe2a07fc72 238 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 1 238 24.333 T 23-04-2016 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 SD28_RS05610 0ce8d601b65641c110a15edc0945a64f 290 Pfam PF00571 CBS domain 66 124 1.2E-6 T 23-04-2016 IPR000644 CBS domain SD28_RS05610 0ce8d601b65641c110a15edc0945a64f 290 Pfam PF00571 CBS domain 145 195 3.6E-5 T 23-04-2016 IPR000644 CBS domain SD28_RS05610 0ce8d601b65641c110a15edc0945a64f 290 SUPERFAMILY SSF54631 63 213 1.16E-29 T 23-04-2016 SD28_RS05610 0ce8d601b65641c110a15edc0945a64f 290 Pfam PF03471 Transporter associated domain 211 287 3.9E-23 T 23-04-2016 IPR005170 Transporter-associated domain SD28_RS05610 0ce8d601b65641c110a15edc0945a64f 290 SUPERFAMILY SSF56176 208 288 4.36E-23 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 SD28_RS05610 0ce8d601b65641c110a15edc0945a64f 290 Gene3D G3DSA:3.30.465.10 203 288 2.4E-28 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 SD28_RS05610 0ce8d601b65641c110a15edc0945a64f 290 PANTHER PTHR22777 28 289 3.8E-86 T 23-04-2016 SD28_RS05610 0ce8d601b65641c110a15edc0945a64f 290 Gene3D G3DSA:3.10.580.10 57 202 1.8E-19 T 23-04-2016 SD28_RS05610 0ce8d601b65641c110a15edc0945a64f 290 SMART SM01091 210 289 1.0E-29 T 23-04-2016 IPR005170 Transporter-associated domain SD28_RS02765 adff53e309f24182c49d50b163adfd85 211 PANTHER PTHR12277 1 206 6.7E-43 T 23-04-2016 SD28_RS02765 adff53e309f24182c49d50b163adfd85 211 SUPERFAMILY SSF53474 3 203 3.78E-33 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS02765 adff53e309f24182c49d50b163adfd85 211 Gene3D G3DSA:3.40.50.1820 3 204 9.0E-36 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS02765 adff53e309f24182c49d50b163adfd85 211 PANTHER PTHR12277:SF79 1 206 6.7E-43 T 23-04-2016 SD28_RS02765 adff53e309f24182c49d50b163adfd85 211 Pfam PF12146 Serine aminopeptidase, S33 43 135 1.1E-8 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 SD28_RS05355 7048e06f26f4c00823fab649ec8d4312 381 SUPERFAMILY SSF101960 5 373 8.89E-68 T 23-04-2016 SD28_RS05355 7048e06f26f4c00823fab649ec8d4312 381 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 90 360 2.3E-69 T 23-04-2016 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 SD28_RS05355 7048e06f26f4c00823fab649ec8d4312 381 Pfam PF01458 Uncharacterized protein family (UPF0051) 152 349 1.7E-51 T 23-04-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 SD28_RS05355 7048e06f26f4c00823fab649ec8d4312 381 PANTHER PTHR30508:SF0 154 350 5.8E-47 T 23-04-2016 SD28_RS05355 7048e06f26f4c00823fab649ec8d4312 381 PANTHER PTHR30508 154 350 5.8E-47 T 23-04-2016 SD28_RS07215 a8cddc10ae909ac700c36be434a994c5 365 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 26 363 23.622 T 23-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS07215 a8cddc10ae909ac700c36be434a994c5 365 ProSitePatterns PS01348 MraY family signature 2. 191 202 - T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS07215 a8cddc10ae909ac700c36be434a994c5 365 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 69 81 1.6E-5 T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS07215 a8cddc10ae909ac700c36be434a994c5 365 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 365 6.3E-119 T 23-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS07215 a8cddc10ae909ac700c36be434a994c5 365 Pfam PF00953 Glycosyl transferase family 4 100 288 5.3E-35 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS07215 a8cddc10ae909ac700c36be434a994c5 365 ProSitePatterns PS01347 MraY family signature 1. 69 81 - T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS07215 a8cddc10ae909ac700c36be434a994c5 365 PANTHER PTHR22926 2 222 6.3E-154 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS07215 a8cddc10ae909ac700c36be434a994c5 365 PANTHER PTHR22926 238 365 6.3E-154 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS07215 a8cddc10ae909ac700c36be434a994c5 365 PANTHER PTHR22926:SF5 2 222 6.3E-154 T 23-04-2016 SD28_RS07215 a8cddc10ae909ac700c36be434a994c5 365 PANTHER PTHR22926:SF5 238 365 6.3E-154 T 23-04-2016 SD28_RS00915 7b0b473864e8999c226b986f087547bc 223 SUPERFAMILY SSF55469 1 218 1.16E-42 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 SD28_RS00915 7b0b473864e8999c226b986f087547bc 223 PANTHER PTHR23026 1 222 1.2E-38 T 23-04-2016 SD28_RS00915 7b0b473864e8999c226b986f087547bc 223 PANTHER PTHR23026:SF90 1 222 1.2E-38 T 23-04-2016 SD28_RS00915 7b0b473864e8999c226b986f087547bc 223 Pfam PF00881 Nitroreductase family 7 195 3.9E-31 T 23-04-2016 IPR029479 Nitroreductase SD28_RS00915 7b0b473864e8999c226b986f087547bc 223 Gene3D G3DSA:3.40.109.10 1 81 6.4E-46 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 SD28_RS00915 7b0b473864e8999c226b986f087547bc 223 Gene3D G3DSA:3.40.109.10 122 219 6.4E-46 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 SD28_RS07425 e15a091da0d4b0856e3b3346308eebe7 423 Gene3D G3DSA:3.50.50.60 1 103 8.3E-29 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS07425 e15a091da0d4b0856e3b3346308eebe7 423 Gene3D G3DSA:3.50.50.60 261 329 8.3E-29 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS07425 e15a091da0d4b0856e3b3346308eebe7 423 Gene3D G3DSA:3.50.50.60 104 257 6.2E-16 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS07425 e15a091da0d4b0856e3b3346308eebe7 423 SUPERFAMILY SSF51905 154 329 1.04E-12 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS07425 e15a091da0d4b0856e3b3346308eebe7 423 SUPERFAMILY SSF51905 1 206 3.5E-30 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS07425 e15a091da0d4b0856e3b3346308eebe7 423 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 317 7.2E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS07425 e15a091da0d4b0856e3b3346308eebe7 423 PANTHER PTHR10632 1 110 9.7E-20 T 23-04-2016 SD28_RS06440 76ae9f0b14acda799df3d7b9b5105804 358 SUPERFAMILY SSF51735 170 294 4.69E-13 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06440 76ae9f0b14acda799df3d7b9b5105804 358 Pfam PF02254 TrkA-N domain 180 248 1.2E-8 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 SD28_RS06440 76ae9f0b14acda799df3d7b9b5105804 358 Gene3D G3DSA:3.40.50.720 192 250 2.9E-11 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06440 76ae9f0b14acda799df3d7b9b5105804 358 Gene3D G3DSA:3.40.50.1480 16 191 8.7E-23 T 23-04-2016 SD28_RS06440 76ae9f0b14acda799df3d7b9b5105804 358 SMART SM00997 155 301 7.5E-5 T 23-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 SD28_RS06440 76ae9f0b14acda799df3d7b9b5105804 358 SUPERFAMILY SSF52283 14 155 5.21E-18 T 23-04-2016 SD28_RS06440 76ae9f0b14acda799df3d7b9b5105804 358 SUPERFAMILY SSF52283 302 343 5.21E-18 T 23-04-2016 SD28_RS03145 40f5c527521cc8dd066d82e7625baf3a 146 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 122 140 2.7E-28 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS03145 40f5c527521cc8dd066d82e7625baf3a 146 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 12 29 2.7E-28 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS03145 40f5c527521cc8dd066d82e7625baf3a 146 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 72 92 2.7E-28 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS03145 40f5c527521cc8dd066d82e7625baf3a 146 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 96 118 2.7E-28 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS03145 40f5c527521cc8dd066d82e7625baf3a 146 Pfam PF02556 Preprotein translocase subunit SecB 4 143 1.8E-48 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS03145 40f5c527521cc8dd066d82e7625baf3a 146 PANTHER PTHR36918:SF1 3 143 2.0E-45 T 23-04-2016 SD28_RS03145 40f5c527521cc8dd066d82e7625baf3a 146 Hamap MF_00821 Protein-export protein SecB [secB]. 1 144 28.926 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS03145 40f5c527521cc8dd066d82e7625baf3a 146 SUPERFAMILY SSF54611 1 139 1.26E-44 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS03145 40f5c527521cc8dd066d82e7625baf3a 146 Gene3D G3DSA:3.10.420.10 2 144 7.5E-50 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS03145 40f5c527521cc8dd066d82e7625baf3a 146 PANTHER PTHR36918 3 143 2.0E-45 T 23-04-2016 SD28_RS03145 40f5c527521cc8dd066d82e7625baf3a 146 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 5 141 2.4E-44 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 SD28_RS01970 d116ae1f9b7fc6f7f73391e1df2a7c81 158 Gene3D G3DSA:3.40.50.700 21 148 1.4E-32 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 SD28_RS01970 d116ae1f9b7fc6f7f73391e1df2a7c81 158 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 1 150 40.582 T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 SD28_RS01970 d116ae1f9b7fc6f7f73391e1df2a7c81 158 SUPERFAMILY SSF56770 8 152 1.09E-65 T 23-04-2016 SD28_RS01970 d116ae1f9b7fc6f7f73391e1df2a7c81 158 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 117 133 - T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 SD28_RS01970 d116ae1f9b7fc6f7f73391e1df2a7c81 158 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 36 144 3.4E-23 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 SD28_RS01970 d116ae1f9b7fc6f7f73391e1df2a7c81 158 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 10 150 9.5E-75 T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 SD28_RS01970 d116ae1f9b7fc6f7f73391e1df2a7c81 158 PANTHER PTHR11995 10 155 9.5E-116 T 23-04-2016 SD28_RS01970 d116ae1f9b7fc6f7f73391e1df2a7c81 158 PANTHER PTHR11995:SF19 10 155 9.5E-116 T 23-04-2016 SD28_RS06285 3eba83a822e8396e37cc384b9bfaf26c 298 SUPERFAMILY SSF53067 1 296 1.04E-45 T 23-04-2016 SD28_RS06285 3eba83a822e8396e37cc384b9bfaf26c 298 ProSitePatterns PS01125 ROK family signature. 134 159 - T 23-04-2016 IPR000600 ROK family SD28_RS06285 3eba83a822e8396e37cc384b9bfaf26c 298 Pfam PF00480 ROK family 4 291 1.2E-66 T 23-04-2016 IPR000600 ROK family SD28_RS06285 3eba83a822e8396e37cc384b9bfaf26c 298 PANTHER PTHR18964:SF10 1 293 1.6E-74 T 23-04-2016 SD28_RS06285 3eba83a822e8396e37cc384b9bfaf26c 298 PANTHER PTHR18964 1 293 1.6E-74 T 23-04-2016 SD28_RS06285 3eba83a822e8396e37cc384b9bfaf26c 298 Gene3D G3DSA:3.30.420.40 1 104 1.7E-30 T 23-04-2016 SD28_RS06285 3eba83a822e8396e37cc384b9bfaf26c 298 Gene3D G3DSA:3.30.420.40 108 295 8.8E-65 T 23-04-2016 SD28_RS03635 eff749f492d458dcd6dcf72fc0d06fdd 562 PANTHER PTHR23135 172 488 2.4E-49 T 23-04-2016 SD28_RS03635 eff749f492d458dcd6dcf72fc0d06fdd 562 Gene3D G3DSA:3.90.190.20 414 506 8.4E-9 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS03635 eff749f492d458dcd6dcf72fc0d06fdd 562 PANTHER PTHR23135:SF18 172 488 2.4E-49 T 23-04-2016 SD28_RS03635 eff749f492d458dcd6dcf72fc0d06fdd 562 Gene3D G3DSA:3.40.1190.10 173 407 1.2E-31 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS03635 eff749f492d458dcd6dcf72fc0d06fdd 562 SUPERFAMILY SSF53244 413 541 2.2E-10 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS03635 eff749f492d458dcd6dcf72fc0d06fdd 562 SUPERFAMILY SSF53623 165 425 1.7E-32 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS03635 eff749f492d458dcd6dcf72fc0d06fdd 562 Pfam PF08245 Mur ligase middle domain 177 388 1.8E-22 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS03650 0c24d19df259be066fe887ad22149523 250 ProSitePatterns PS00380 Rhodanese signature 1. 173 184 - T 23-04-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 SD28_RS03650 0c24d19df259be066fe887ad22149523 250 PANTHER PTHR12231 145 247 6.3E-17 T 23-04-2016 SD28_RS03650 0c24d19df259be066fe887ad22149523 250 SMART SM00450 22 120 8.5E-14 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS03650 0c24d19df259be066fe887ad22149523 250 SMART SM00450 148 245 5.5E-17 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS03650 0c24d19df259be066fe887ad22149523 250 SUPERFAMILY SSF52821 8 124 2.62E-29 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS03650 0c24d19df259be066fe887ad22149523 250 Pfam PF00581 Rhodanese-like domain 24 116 1.4E-16 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS03650 0c24d19df259be066fe887ad22149523 250 Pfam PF00581 Rhodanese-like domain 150 241 9.5E-16 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS03650 0c24d19df259be066fe887ad22149523 250 SUPERFAMILY SSF52821 133 248 2.62E-32 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS03650 0c24d19df259be066fe887ad22149523 250 Gene3D G3DSA:3.40.250.10 9 123 6.7E-29 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS03650 0c24d19df259be066fe887ad22149523 250 Gene3D G3DSA:3.40.250.10 135 248 1.1E-31 T 23-04-2016 IPR001763 Rhodanese-like domain SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 SUPERFAMILY SSF51230 115 208 1.44E-22 T 23-04-2016 IPR011053 Single hybrid motif SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 Gene3D G3DSA:2.40.50.100 114 208 2.8E-20 T 23-04-2016 SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 SUPERFAMILY SSF52777 297 533 6.23E-82 T 23-04-2016 SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 PANTHER PTHR23151 24 534 3.5E-217 T 23-04-2016 SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 105 534 3.9E-181 T 23-04-2016 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 Gene3D G3DSA:3.30.559.10 299 533 1.1E-82 T 23-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 305 533 1.0E-77 T 23-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 Pfam PF00364 Biotin-requiring enzyme 5 75 1.4E-19 T 23-04-2016 IPR000089 Biotin/lipoyl attachment SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 Pfam PF00364 Biotin-requiring enzyme 117 187 4.8E-20 T 23-04-2016 IPR000089 Biotin/lipoyl attachment SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 Gene3D G3DSA:2.40.50.100 6 81 1.5E-20 T 23-04-2016 SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 SUPERFAMILY SSF47005 229 273 3.14E-12 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 139 168 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 PANTHER PTHR23151:SF68 24 534 3.5E-217 T 23-04-2016 SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 SUPERFAMILY SSF51230 2 92 2.22E-22 T 23-04-2016 IPR011053 Single hybrid motif SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 Pfam PF02817 e3 binding domain 234 266 3.4E-14 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 SD28_RS03230 24efa27938c95083a00bc227bcbe9dee 534 Gene3D G3DSA:4.10.320.10 229 277 1.9E-19 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 SD28_RS05985 fc8f9773ab778c19eba83579cbf2850a 455 SUPERFAMILY SSF53244 312 453 8.09E-27 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS05985 fc8f9773ab778c19eba83579cbf2850a 455 SUPERFAMILY SSF53623 96 311 1.19E-50 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS05985 fc8f9773ab778c19eba83579cbf2850a 455 Pfam PF08245 Mur ligase middle domain 110 293 4.4E-24 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS05985 fc8f9773ab778c19eba83579cbf2850a 455 PANTHER PTHR23135 1 446 1.2E-175 T 23-04-2016 SD28_RS05985 fc8f9773ab778c19eba83579cbf2850a 455 Pfam PF02875 Mur ligase family, glutamate ligase domain 313 385 2.9E-10 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS05985 fc8f9773ab778c19eba83579cbf2850a 455 Gene3D G3DSA:3.90.190.20 315 454 8.2E-24 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 SD28_RS05985 fc8f9773ab778c19eba83579cbf2850a 455 Pfam PF01225 Mur ligase family, catalytic domain 4 99 3.5E-13 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS05985 fc8f9773ab778c19eba83579cbf2850a 455 PANTHER PTHR23135:SF17 1 446 1.2E-175 T 23-04-2016 SD28_RS05985 fc8f9773ab778c19eba83579cbf2850a 455 SUPERFAMILY SSF51984 3 91 1.57E-19 T 23-04-2016 SD28_RS05985 fc8f9773ab778c19eba83579cbf2850a 455 Gene3D G3DSA:3.40.1190.10 94 314 2.3E-73 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 SD28_RS05985 fc8f9773ab778c19eba83579cbf2850a 455 Gene3D G3DSA:3.40.50.720 2 92 9.0E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05985 fc8f9773ab778c19eba83579cbf2850a 455 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 4 453 9.4E-168 T 23-04-2016 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 UniPathway: UPA00544 SD28_RS05365 ecaa1e04801743a2688e3406253c3846 482 Pfam PF01458 Uncharacterized protein family (UPF0051) 220 453 1.2E-66 T 23-04-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 SD28_RS05365 ecaa1e04801743a2688e3406253c3846 482 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 12 473 9.5E-195 T 23-04-2016 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 SD28_RS05365 ecaa1e04801743a2688e3406253c3846 482 PANTHER PTHR30508 2 482 0.0 T 23-04-2016 SD28_RS05365 ecaa1e04801743a2688e3406253c3846 482 SUPERFAMILY SSF101960 105 479 1.31E-138 T 23-04-2016 SD28_RS05365 ecaa1e04801743a2688e3406253c3846 482 SUPERFAMILY SSF101960 33 78 1.31E-138 T 23-04-2016 SD28_RS05365 ecaa1e04801743a2688e3406253c3846 482 PANTHER PTHR30508:SF1 2 482 0.0 T 23-04-2016 SD28_RS02305 22de09f3459d1acd8c9f36f22b1b7d1f 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.7E-17 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 SD28_RS02305 22de09f3459d1acd8c9f36f22b1b7d1f 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.7E-17 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 SD28_RS02305 22de09f3459d1acd8c9f36f22b1b7d1f 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.7E-17 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 SD28_RS02305 22de09f3459d1acd8c9f36f22b1b7d1f 103 SUPERFAMILY SSF54999 5 101 1.31E-36 T 23-04-2016 IPR027486 Ribosomal protein S10 domain SD28_RS02305 22de09f3459d1acd8c9f36f22b1b7d1f 103 PANTHER PTHR11700 3 103 5.9E-51 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 SD28_RS02305 22de09f3459d1acd8c9f36f22b1b7d1f 103 Gene3D G3DSA:3.30.70.600 3 102 4.8E-43 T 23-04-2016 IPR027486 Ribosomal protein S10 domain SD28_RS02305 22de09f3459d1acd8c9f36f22b1b7d1f 103 SMART SM01403 7 101 1.3E-53 T 23-04-2016 IPR027486 Ribosomal protein S10 domain SD28_RS02305 22de09f3459d1acd8c9f36f22b1b7d1f 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 6.5E-45 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 SD28_RS02305 22de09f3459d1acd8c9f36f22b1b7d1f 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 1.4E-34 T 23-04-2016 IPR027486 Ribosomal protein S10 domain SD28_RS02305 22de09f3459d1acd8c9f36f22b1b7d1f 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 26.235 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 SD28_RS03540 74bea76d3bea082084a16e4d82c79da9 854 Pfam PF02839 Carbohydrate binding domain 175 216 2.1E-15 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS03540 74bea76d3bea082084a16e4d82c79da9 854 SUPERFAMILY SSF51445 501 829 3.6E-33 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily SD28_RS03540 74bea76d3bea082084a16e4d82c79da9 854 SUPERFAMILY SSF51055 163 220 1.44E-16 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS03540 74bea76d3bea082084a16e4d82c79da9 854 Pfam PF00704 Glycosyl hydrolases family 18 506 825 3.8E-19 T 23-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 SD28_RS03540 74bea76d3bea082084a16e4d82c79da9 854 SMART SM00495 174 219 1.9E-18 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS03540 74bea76d3bea082084a16e4d82c79da9 854 SMART SM00495 23 77 3.7 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS03540 74bea76d3bea082084a16e4d82c79da9 854 Gene3D G3DSA:3.20.20.80 502 826 2.0E-31 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 SD28_RS03540 74bea76d3bea082084a16e4d82c79da9 854 SMART SM00636 505 826 7.6E-5 T 23-04-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 SD28_RS03540 74bea76d3bea082084a16e4d82c79da9 854 Gene3D G3DSA:2.10.10.20 173 217 1.7E-19 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS03670 46d604ddeb03e258472390e348816fb2 291 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 239 249 - T 23-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site SD28_RS03670 46d604ddeb03e258472390e348816fb2 291 Gene3D G3DSA:3.40.50.200 16 280 2.1E-47 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 SD28_RS03670 46d604ddeb03e258472390e348816fb2 291 PRINTS PR00723 Subtilisin serine protease family (S8) signature 238 254 8.8E-10 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related SD28_RS03670 46d604ddeb03e258472390e348816fb2 291 PRINTS PR00723 Subtilisin serine protease family (S8) signature 31 44 8.8E-10 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related SD28_RS03670 46d604ddeb03e258472390e348816fb2 291 PANTHER PTHR10795 35 271 3.8E-28 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related SD28_RS03670 46d604ddeb03e258472390e348816fb2 291 PANTHER PTHR10795:SF419 35 271 3.8E-28 T 23-04-2016 SD28_RS03670 46d604ddeb03e258472390e348816fb2 291 SUPERFAMILY SSF52743 17 277 1.57E-47 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 SD28_RS03670 46d604ddeb03e258472390e348816fb2 291 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 35 45 - T 23-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site SD28_RS03670 46d604ddeb03e258472390e348816fb2 291 Pfam PF00082 Subtilase family 3 281 1.9E-36 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 SD28_RS04640 359f99539b0b6fc9828171df501e366b 190 Gene3D G3DSA:3.30.63.10 48 87 2.3E-24 T 23-04-2016 SD28_RS04640 359f99539b0b6fc9828171df501e366b 190 PANTHER PTHR23117 1 186 2.2E-74 T 23-04-2016 SD28_RS04640 359f99539b0b6fc9828171df501e366b 190 SMART SM00072 2 188 6.9E-46 T 23-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit SD28_RS04640 359f99539b0b6fc9828171df501e366b 190 Gene3D G3DSA:3.40.50.300 88 187 1.2E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04640 359f99539b0b6fc9828171df501e366b 190 Gene3D G3DSA:3.40.50.300 5 16 1.2E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04640 359f99539b0b6fc9828171df501e366b 190 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 23-04-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 SD28_RS04640 359f99539b0b6fc9828171df501e366b 190 Gene3D G3DSA:3.40.50.300 17 47 2.3E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04640 359f99539b0b6fc9828171df501e366b 190 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 5 184 1.7E-66 T 23-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 SD28_RS04640 359f99539b0b6fc9828171df501e366b 190 Pfam PF00625 Guanylate kinase 6 185 5.0E-50 T 23-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit SD28_RS04640 359f99539b0b6fc9828171df501e366b 190 SUPERFAMILY SSF52540 2 185 7.81E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04640 359f99539b0b6fc9828171df501e366b 190 Hamap MF_00328 Guanylate kinase [gmk]. 1 188 33.663 T 23-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 SD28_RS00835 0ba5e0bae4783f519d12d4e479cee5f0 253 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 1 247 37.873 T 23-04-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 SD28_RS00835 0ba5e0bae4783f519d12d4e479cee5f0 253 Pfam PF00121 Triosephosphate isomerase 3 244 7.7E-85 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 SD28_RS00835 0ba5e0bae4783f519d12d4e479cee5f0 253 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 4 237 4.3E-60 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 SD28_RS00835 0ba5e0bae4783f519d12d4e479cee5f0 253 ProSitePatterns PS00171 Triosephosphate isomerase active site. 163 173 - T 23-04-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 SD28_RS00835 0ba5e0bae4783f519d12d4e479cee5f0 253 Gene3D G3DSA:3.20.20.70 2 250 1.5E-94 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS00835 0ba5e0bae4783f519d12d4e479cee5f0 253 PANTHER PTHR21139 2 244 1.7E-103 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 SD28_RS00835 0ba5e0bae4783f519d12d4e479cee5f0 253 SUPERFAMILY SSF51351 2 249 9.69E-84 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 SD28_RS05400 16e50e12dd502b2fe77d48f50105e4f4 460 Pfam PF02321 Outer membrane efflux protein 31 220 1.9E-18 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 SD28_RS05400 16e50e12dd502b2fe77d48f50105e4f4 460 Pfam PF02321 Outer membrane efflux protein 243 428 6.7E-25 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 SD28_RS05400 16e50e12dd502b2fe77d48f50105e4f4 460 Gene3D G3DSA:1.20.1600.10 29 441 1.9E-48 T 23-04-2016 SD28_RS05400 16e50e12dd502b2fe77d48f50105e4f4 460 PANTHER PTHR30026 34 460 1.8E-39 T 23-04-2016 SD28_RS05400 16e50e12dd502b2fe77d48f50105e4f4 460 SUPERFAMILY SSF56954 31 453 2.22E-67 T 23-04-2016 SD28_RS05400 16e50e12dd502b2fe77d48f50105e4f4 460 PANTHER PTHR30026:SF3 34 460 1.8E-39 T 23-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 SD28_RS00120 a14ea5fa24772e10e93f86cdb5bee306 191 PANTHER PTHR34478 1 185 1.1E-54 T 23-04-2016 SD28_RS00120 a14ea5fa24772e10e93f86cdb5bee306 191 SUPERFAMILY SSF140478 29 165 1.44E-37 T 23-04-2016 IPR023353 LemA-like domain SD28_RS00120 a14ea5fa24772e10e93f86cdb5bee306 191 Pfam PF04011 LemA family 7 182 2.0E-45 T 23-04-2016 IPR007156 LemA SD28_RS00120 a14ea5fa24772e10e93f86cdb5bee306 191 Gene3D G3DSA:1.20.1440.20 14 183 6.1E-45 T 23-04-2016 IPR023353 LemA-like domain SD28_RS06825 dc5a90aace3448cbe1ae8d67d17b27cc 747 PANTHER PTHR10909:SF283 24 467 3.5E-209 T 23-04-2016 SD28_RS06825 dc5a90aace3448cbe1ae8d67d17b27cc 747 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 58 165 7.7E-15 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 SD28_RS06825 dc5a90aace3448cbe1ae8d67d17b27cc 747 SUPERFAMILY SSF47203 294 449 1.13E-23 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 SD28_RS06825 dc5a90aace3448cbe1ae8d67d17b27cc 747 Pfam PF09317 Domain of unknown function (DUF1974) 448 730 2.8E-98 T 23-04-2016 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.-|UniPathway: UPA00659 SD28_RS06825 dc5a90aace3448cbe1ae8d67d17b27cc 747 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 294 435 6.3E-13 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 SD28_RS06825 dc5a90aace3448cbe1ae8d67d17b27cc 747 Gene3D G3DSA:1.10.540.10 29 167 4.5E-27 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 SD28_RS06825 dc5a90aace3448cbe1ae8d67d17b27cc 747 SUPERFAMILY SSF56645 53 289 3.8E-39 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 SD28_RS06825 dc5a90aace3448cbe1ae8d67d17b27cc 747 Gene3D G3DSA:2.40.110.10 170 281 1.6E-12 T 23-04-2016 SD28_RS06825 dc5a90aace3448cbe1ae8d67d17b27cc 747 Gene3D G3DSA:1.20.140.10 282 441 6.8E-23 T 23-04-2016 SD28_RS06825 dc5a90aace3448cbe1ae8d67d17b27cc 747 PANTHER PTHR10909 24 467 3.5E-209 T 23-04-2016 SD28_RS03190 6a5882dd0de3ae36fb84e01c3c6408e1 241 SUPERFAMILY SSF52402 16 165 3.1E-6 T 23-04-2016 SD28_RS03190 6a5882dd0de3ae36fb84e01c3c6408e1 241 Gene3D G3DSA:3.40.50.620 13 161 9.6E-4 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS02060 47cb1f6e4c8554e4c5c5626165d0cceb 136 Pfam PF12092 Protein of unknown function (DUF3568) 5 130 1.7E-20 T 23-04-2016 IPR021952 Protein of unknown function DUF3568 SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 Pfam PF03461 TRCF domain 601 693 1.9E-22 T 23-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 SUPERFAMILY SSF52540 373 581 8.1E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 SMART SM01058 70 167 8.6E-39 T 23-04-2016 IPR003711 CarD-like/TRCF domain SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 SUPERFAMILY SSF141259 65 139 1.57E-19 T 23-04-2016 IPR003711 CarD-like/TRCF domain SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 SMART SM00487 191 381 6.1E-38 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 Gene3D G3DSA:3.40.50.300 184 377 1.3E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 SUPERFAMILY SSF143517 590 736 1.14E-36 T 23-04-2016 SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 12 673 3.0E-276 T 23-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 Pfam PF00270 DEAD/DEAH box helicase 196 355 1.5E-21 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 PANTHER PTHR14025:SF21 13 733 0.0 T 23-04-2016 SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 SUPERFAMILY SSF52540 115 374 3.09E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 SMART SM00982 600 699 5.9E-38 T 23-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 13 698 23.88 T 23-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 SMART SM00490 417 501 2.9E-21 T 23-04-2016 IPR001650 Helicase, C-terminal SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 Pfam PF00271 Helicase conserved C-terminal domain 398 500 3.5E-19 T 23-04-2016 IPR001650 Helicase, C-terminal SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 Gene3D G3DSA:3.40.50.300 385 547 6.5E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 Pfam PF02559 CarD-like/TRCF domain 71 166 3.3E-21 T 23-04-2016 IPR003711 CarD-like/TRCF domain SD28_RS06560 96801fb0ec276024ad1972dcd395a072 739 PANTHER PTHR14025 13 733 0.0 T 23-04-2016 SD28_RS06475 0f5824fd2ba7b93c9b6fc619ddb84d13 109 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 4 93 7.2E-30 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family SD28_RS06475 0f5824fd2ba7b93c9b6fc619ddb84d13 109 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 3 96 21.959 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family SD28_RS06475 0f5824fd2ba7b93c9b6fc619ddb84d13 109 Gene3D G3DSA:3.30.1310.10 1 109 5.8E-44 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family SD28_RS06475 0f5824fd2ba7b93c9b6fc619ddb84d13 109 PIRSF PIRSF004555 1 109 6.6E-34 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family SD28_RS06475 0f5824fd2ba7b93c9b6fc619ddb84d13 109 PANTHER PTHR33449 4 109 7.3E-37 T 23-04-2016 SD28_RS06475 0f5824fd2ba7b93c9b6fc619ddb84d13 109 SUPERFAMILY SSF82607 5 94 1.57E-30 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family SD28_RS06475 0f5824fd2ba7b93c9b6fc619ddb84d13 109 Pfam PF02575 YbaB/EbfC DNA-binding family 9 95 1.6E-30 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family SD28_RS06475 0f5824fd2ba7b93c9b6fc619ddb84d13 109 PANTHER PTHR33449:SF1 4 109 7.3E-37 T 23-04-2016 SD28_RS01455 7e441099156dbce3c4ad2e2421df7311 88 Hamap MF_00634 UPF0235 protein YggU [yggU]. 1 86 16.719 T 23-04-2016 IPR003746 Protein of unknown function DUF167 SD28_RS01455 7e441099156dbce3c4ad2e2421df7311 88 SUPERFAMILY SSF69786 4 78 1.19E-23 T 23-04-2016 IPR003746 Protein of unknown function DUF167 SD28_RS01455 7e441099156dbce3c4ad2e2421df7311 88 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 4 73 7.5E-18 T 23-04-2016 IPR005228 Conserved hypothetical protein CHP00251 SD28_RS01455 7e441099156dbce3c4ad2e2421df7311 88 PANTHER PTHR13420 4 82 3.2E-16 T 23-04-2016 SD28_RS01455 7e441099156dbce3c4ad2e2421df7311 88 Gene3D G3DSA:3.30.1200.10 3 78 8.8E-24 T 23-04-2016 IPR003746 Protein of unknown function DUF167 SD28_RS01455 7e441099156dbce3c4ad2e2421df7311 88 SMART SM01152 1 74 1.4E-24 T 23-04-2016 IPR003746 Protein of unknown function DUF167 SD28_RS01455 7e441099156dbce3c4ad2e2421df7311 88 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 3 72 2.3E-24 T 23-04-2016 IPR003746 Protein of unknown function DUF167 SD28_RS05220 e2cb3feae018fc0487f0191cbf8808c4 303 PANTHER PTHR10584 1 288 5.0E-87 T 23-04-2016 SD28_RS05220 e2cb3feae018fc0487f0191cbf8808c4 303 PANTHER PTHR10584:SF57 1 288 5.0E-87 T 23-04-2016 SD28_RS05220 e2cb3feae018fc0487f0191cbf8808c4 303 SUPERFAMILY SSF53613 6 288 2.81E-64 T 23-04-2016 IPR029056 Ribokinase-like SD28_RS05220 e2cb3feae018fc0487f0191cbf8808c4 303 Gene3D G3DSA:3.40.1190.20 8 287 2.8E-60 T 23-04-2016 IPR029056 Ribokinase-like SD28_RS05220 e2cb3feae018fc0487f0191cbf8808c4 303 Pfam PF00294 pfkB family carbohydrate kinase 9 289 3.2E-53 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB SD28_RS05220 e2cb3feae018fc0487f0191cbf8808c4 303 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 244 257 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 SD28_RS06280 eedf3e0910164970db8317c154872986 398 Gene3D G3DSA:3.90.1150.10 271 393 8.6E-26 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS06280 eedf3e0910164970db8317c154872986 398 SUPERFAMILY SSF53383 1 391 5.19E-92 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS06280 eedf3e0910164970db8317c154872986 398 Pfam PF00155 Aminotransferase class I and II 31 384 5.1E-45 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SD28_RS06280 eedf3e0910164970db8317c154872986 398 Gene3D G3DSA:3.40.640.10 56 270 1.2E-62 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS06280 eedf3e0910164970db8317c154872986 398 PANTHER PTHR11751 10 391 1.2E-140 T 23-04-2016 SD28_RS06280 eedf3e0910164970db8317c154872986 398 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 232 245 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 SD28_RS06280 eedf3e0910164970db8317c154872986 398 PANTHER PTHR11751:SF404 10 391 1.2E-140 T 23-04-2016 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 SMART SM00919 279 560 1.8E-102 T 23-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 PANTHER PTHR23406 18 299 6.2E-222 T 23-04-2016 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 PANTHER PTHR23406 315 600 6.2E-222 T 23-04-2016 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 Pfam PF00390 Malic enzyme, N-terminal domain 92 269 2.5E-66 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 SUPERFAMILY SSF51735 279 582 7.32E-72 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 Pfam PF03949 Malic enzyme, NAD binding domain 279 560 3.1E-80 T 23-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 Gene3D G3DSA:3.40.50.10380 24 276 9.2E-98 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 Gene3D G3DSA:3.40.50.720 277 581 8.6E-95 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 SMART SM01274 89 269 1.3E-83 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 PRINTS PR00072 Malic enzyme signature 95 119 3.7E-57 T 23-04-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 PRINTS PR00072 Malic enzyme signature 250 268 3.7E-57 T 23-04-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 PRINTS PR00072 Malic enzyme signature 275 291 3.7E-57 T 23-04-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 PRINTS PR00072 Malic enzyme signature 191 213 3.7E-57 T 23-04-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 PRINTS PR00072 Malic enzyme signature 435 451 3.7E-57 T 23-04-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 PRINTS PR00072 Malic enzyme signature 155 184 3.7E-57 T 23-04-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 PIRSF PIRSF000106 1 602 2.8E-219 T 23-04-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 SUPERFAMILY SSF53223 19 278 1.01E-95 T 23-04-2016 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 PANTHER PTHR23406:SF34 18 299 6.2E-222 T 23-04-2016 SD28_RS07640 cf2f94e95699a182f98c7aa2379aa843 602 PANTHER PTHR23406:SF34 315 600 6.2E-222 T 23-04-2016 SD28_RS06235 2768a72994709db004029fe98af392cd 266 Pfam PF01048 Phosphorylase superfamily 32 239 1.1E-37 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 SD28_RS06235 2768a72994709db004029fe98af392cd 266 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 78 93 - T 23-04-2016 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 SD28_RS06235 2768a72994709db004029fe98af392cd 266 PANTHER PTHR21234 11 236 5.9E-92 T 23-04-2016 IPR018017 Nucleoside phosphorylase SD28_RS06235 2768a72994709db004029fe98af392cd 266 PANTHER PTHR21234:SF22 11 236 5.9E-92 T 23-04-2016 SD28_RS06235 2768a72994709db004029fe98af392cd 266 Gene3D G3DSA:3.40.50.1580 14 262 1.1E-74 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 SD28_RS06235 2768a72994709db004029fe98af392cd 266 SUPERFAMILY SSF53167 18 261 4.58E-69 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 SD28_RS01025 f8014602a24ae3f8140533a1e3bf18a0 288 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 88 99 - T 23-04-2016 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS01025 f8014602a24ae3f8140533a1e3bf18a0 288 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 8 230 35.621 T 23-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS01025 f8014602a24ae3f8140533a1e3bf18a0 288 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 8 280 2.2E-81 T 23-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS01025 f8014602a24ae3f8140533a1e3bf18a0 288 Gene3D G3DSA:3.30.950.10 119 230 4.8E-36 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 SD28_RS01025 f8014602a24ae3f8140533a1e3bf18a0 288 PIRSF PIRSF005917 2 285 1.3E-98 T 23-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS01025 f8014602a24ae3f8140533a1e3bf18a0 288 Gene3D G3DSA:3.40.1010.10 7 118 2.6E-17 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 SD28_RS01025 f8014602a24ae3f8140533a1e3bf18a0 288 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 9 209 1.3E-29 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 SD28_RS01025 f8014602a24ae3f8140533a1e3bf18a0 288 PANTHER PTHR21091 5 226 1.1E-75 T 23-04-2016 SD28_RS01025 f8014602a24ae3f8140533a1e3bf18a0 288 PANTHER PTHR21091:SF18 5 226 1.1E-75 T 23-04-2016 SD28_RS01025 f8014602a24ae3f8140533a1e3bf18a0 288 SUPERFAMILY SSF53790 6 228 3.4E-73 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 SD28_RS07520 d7dd55f270a82b226b49441f80a36d65 437 PANTHER PTHR31299:SF0 29 436 4.1E-107 T 23-04-2016 SD28_RS07520 d7dd55f270a82b226b49441f80a36d65 437 PIRSF PIRSF036794 6 437 7.4E-102 T 23-04-2016 IPR014622 Uncharacterised conserved protein UCP036794, erythromycin esterase-type SD28_RS07520 d7dd55f270a82b226b49441f80a36d65 437 SUPERFAMILY SSF159501 11 433 2.59E-113 T 23-04-2016 SD28_RS07520 d7dd55f270a82b226b49441f80a36d65 437 Gene3D G3DSA:3.40.1660.10 292 435 3.5E-67 T 23-04-2016 SD28_RS07520 d7dd55f270a82b226b49441f80a36d65 437 Gene3D G3DSA:3.40.1660.10 9 69 3.5E-67 T 23-04-2016 SD28_RS07520 d7dd55f270a82b226b49441f80a36d65 437 Pfam PF05139 Erythromycin esterase 68 429 3.8E-99 T 23-04-2016 IPR007815 Erythromycin esterase GO:0046677 SD28_RS07520 d7dd55f270a82b226b49441f80a36d65 437 PANTHER PTHR31299 29 436 4.1E-107 T 23-04-2016 SD28_RS07520 d7dd55f270a82b226b49441f80a36d65 437 Gene3D G3DSA:3.30.1870.10 70 150 7.1E-19 T 23-04-2016 SD28_RS06270 e3a9c3ccc3a72e31343de0e9a2ea321a 549 PIRSF PIRSF003128 1 549 3.5E-139 T 23-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 SD28_RS06270 e3a9c3ccc3a72e31343de0e9a2ea321a 549 SUPERFAMILY SSF52540 2 50 9.02E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06270 e3a9c3ccc3a72e31343de0e9a2ea321a 549 SUPERFAMILY SSF52540 341 503 9.02E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06270 e3a9c3ccc3a72e31343de0e9a2ea321a 549 Gene3D G3DSA:3.40.50.300 427 502 8.6E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06270 e3a9c3ccc3a72e31343de0e9a2ea321a 549 Gene3D G3DSA:3.40.50.300 374 382 8.6E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06270 e3a9c3ccc3a72e31343de0e9a2ea321a 549 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 547 1.2E-140 T 23-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 SD28_RS06270 e3a9c3ccc3a72e31343de0e9a2ea321a 549 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 503 3.9E-22 T 23-04-2016 IPR003395 RecF/RecN/SMC, N-terminal SD28_RS06270 e3a9c3ccc3a72e31343de0e9a2ea321a 549 SUPERFAMILY SSF52540 1 215 3.32E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06270 e3a9c3ccc3a72e31343de0e9a2ea321a 549 Gene3D G3DSA:3.40.50.300 1 206 5.7E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06270 e3a9c3ccc3a72e31343de0e9a2ea321a 549 PANTHER PTHR11059 2 547 1.0E-125 T 23-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 SD28_RS07360 884d46876f56d62e3a3a541077b14e75 643 SMART SM00954 252 362 5.0E-52 T 23-04-2016 IPR007685 RelA/SpoT GO:0015969 SD28_RS07360 884d46876f56d62e3a3a541077b14e75 643 SUPERFAMILY SSF109604 24 207 3.45E-39 T 23-04-2016 SD28_RS07360 884d46876f56d62e3a3a541077b14e75 643 Pfam PF04607 Region found in RelA / SpoT proteins 252 361 3.4E-33 T 23-04-2016 IPR007685 RelA/SpoT GO:0015969 SD28_RS07360 884d46876f56d62e3a3a541077b14e75 643 Gene3D G3DSA:3.10.20.30 400 461 5.5E-19 T 23-04-2016 IPR012675 Beta-grasp domain SD28_RS07360 884d46876f56d62e3a3a541077b14e75 643 Pfam PF13328 HD domain 46 192 1.4E-34 T 23-04-2016 IPR003607 HD/PDEase domain SD28_RS07360 884d46876f56d62e3a3a541077b14e75 643 PANTHER PTHR21262 62 642 1.5E-201 T 23-04-2016 SD28_RS07360 884d46876f56d62e3a3a541077b14e75 643 PANTHER PTHR21262:SF5 62 642 1.5E-201 T 23-04-2016 SD28_RS07360 884d46876f56d62e3a3a541077b14e75 643 Pfam PF02824 TGS domain 400 459 2.5E-17 T 23-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 SD28_RS07360 884d46876f56d62e3a3a541077b14e75 643 SUPERFAMILY SSF81271 396 459 1.31E-15 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 SD28_RS07360 884d46876f56d62e3a3a541077b14e75 643 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 62 643 4.4E-155 T 23-04-2016 IPR004811 RelA/SpoT family GO:0015969 SD28_RS07360 884d46876f56d62e3a3a541077b14e75 643 SUPERFAMILY SSF81301 209 381 1.31E-53 T 23-04-2016 SD28_RS07360 884d46876f56d62e3a3a541077b14e75 643 Gene3D G3DSA:3.30.460.10 194 341 3.2E-42 T 23-04-2016 SD28_RS03610 6735b1afcd12b5001b241956b03f966b 409 PANTHER PTHR30012 15 409 1.4E-131 T 23-04-2016 SD28_RS03610 6735b1afcd12b5001b241956b03f966b 409 Pfam PF00482 Type II secretion system (T2SS), protein F 75 198 1.2E-26 T 23-04-2016 IPR018076 Type II secretion system F domain SD28_RS03610 6735b1afcd12b5001b241956b03f966b 409 Pfam PF00482 Type II secretion system (T2SS), protein F 279 401 2.9E-27 T 23-04-2016 IPR018076 Type II secretion system F domain SD28_RS03610 6735b1afcd12b5001b241956b03f966b 409 PANTHER PTHR30012:SF0 15 409 1.4E-131 T 23-04-2016 SD28_RS03610 6735b1afcd12b5001b241956b03f966b 409 PRINTS PR00812 Bacterial general secretion pathway protein F signature 390 409 1.1E-20 T 23-04-2016 IPR003004 GspF/PilC family SD28_RS03610 6735b1afcd12b5001b241956b03f966b 409 PRINTS PR00812 Bacterial general secretion pathway protein F signature 170 198 1.1E-20 T 23-04-2016 IPR003004 GspF/PilC family SD28_RS03610 6735b1afcd12b5001b241956b03f966b 409 PRINTS PR00812 Bacterial general secretion pathway protein F signature 374 388 1.1E-20 T 23-04-2016 IPR003004 GspF/PilC family SD28_RS03610 6735b1afcd12b5001b241956b03f966b 409 PRINTS PR00812 Bacterial general secretion pathway protein F signature 70 82 1.1E-20 T 23-04-2016 IPR003004 GspF/PilC family SD28_RS00990 ff07b746197f4cc97a3cb262f68b2438 147 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 1 142 26.307 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 SD28_RS00990 ff07b746197f4cc97a3cb262f68b2438 147 Gene3D G3DSA:3.40.50.960 3 142 4.8E-55 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 SD28_RS00990 ff07b746197f4cc97a3cb262f68b2438 147 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 3 137 3.6E-46 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 SD28_RS00990 ff07b746197f4cc97a3cb262f68b2438 147 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 3 139 2.9E-50 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 SD28_RS00990 ff07b746197f4cc97a3cb262f68b2438 147 PANTHER PTHR21058 3 143 2.2E-60 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 SD28_RS00990 ff07b746197f4cc97a3cb262f68b2438 147 SUPERFAMILY SSF52121 3 143 3.4E-53 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 SD28_RS02030 6bcd9ad0c77939bc51f1a987e3feba81 482 PANTHER PTHR22773:SF41 2 482 1.1E-139 T 23-04-2016 SD28_RS02030 6bcd9ad0c77939bc51f1a987e3feba81 482 PANTHER PTHR22773 2 482 1.1E-139 T 23-04-2016 SD28_RS02030 6bcd9ad0c77939bc51f1a987e3feba81 482 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 415 434 7.0E-7 T 23-04-2016 SD28_RS02030 6bcd9ad0c77939bc51f1a987e3feba81 482 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 71 96 7.0E-7 T 23-04-2016 SD28_RS02030 6bcd9ad0c77939bc51f1a987e3feba81 482 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 309 321 7.0E-7 T 23-04-2016 SD28_RS02030 6bcd9ad0c77939bc51f1a987e3feba81 482 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 217 238 7.0E-7 T 23-04-2016 SD28_RS02030 6bcd9ad0c77939bc51f1a987e3feba81 482 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 3 472 17.002 T 23-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 SD28_RS02030 6bcd9ad0c77939bc51f1a987e3feba81 482 Pfam PF00361 Proton-conducting membrane transporter 123 421 2.7E-70 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 SD28_RS02030 6bcd9ad0c77939bc51f1a987e3feba81 482 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 6 471 6.1E-126 T 23-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 SD28_RS05340 ca94d1714d5df4c36255bd0ebb15ceb9 136 Pfam PF11697 Protein of unknown function (DUF3293) 32 105 1.6E-14 T 23-04-2016 IPR021710 Protein of unknown function DUF3293 SD28_RS01380 d33c6ded5e03b66ea33b14d5f93038a6 619 PANTHER PTHR23355 179 619 3.9E-73 T 23-04-2016 SD28_RS01380 d33c6ded5e03b66ea33b14d5f93038a6 619 Pfam PF00773 RNB domain 232 510 3.0E-51 T 23-04-2016 SD28_RS01380 d33c6ded5e03b66ea33b14d5f93038a6 619 SMART SM00955 232 511 6.7E-58 T 23-04-2016 SD28_RS01380 d33c6ded5e03b66ea33b14d5f93038a6 619 Gene3D G3DSA:1.10.10.10 153 218 1.6E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS01380 d33c6ded5e03b66ea33b14d5f93038a6 619 PANTHER PTHR23355:SF5 179 619 3.9E-73 T 23-04-2016 SD28_RS01380 d33c6ded5e03b66ea33b14d5f93038a6 619 SUPERFAMILY SSF50249 179 553 3.77E-76 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01380 d33c6ded5e03b66ea33b14d5f93038a6 619 Gene3D G3DSA:2.40.50.140 557 616 1.5E-6 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS07810 595bde37f8ef831f61499b9b7263d086 530 Gene3D G3DSA:1.25.40.20 398 525 1.0E-41 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS07810 595bde37f8ef831f61499b9b7263d086 530 Pfam PF12796 Ankyrin repeats (3 copies) 391 466 6.7E-15 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS07810 595bde37f8ef831f61499b9b7263d086 530 Pfam PF12796 Ankyrin repeats (3 copies) 470 523 6.4E-13 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS07810 595bde37f8ef831f61499b9b7263d086 530 PRINTS PR01415 Ankyrin repeat signature 438 453 2.7E-8 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS07810 595bde37f8ef831f61499b9b7263d086 530 PRINTS PR01415 Ankyrin repeat signature 486 500 2.7E-8 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS07810 595bde37f8ef831f61499b9b7263d086 530 SMART SM00248 470 499 4.8E-7 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS07810 595bde37f8ef831f61499b9b7263d086 530 SMART SM00248 402 432 0.0093 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS07810 595bde37f8ef831f61499b9b7263d086 530 SMART SM00248 437 466 5.1E-7 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 SD28_RS07810 595bde37f8ef831f61499b9b7263d086 530 PANTHER PTHR24188 76 84 2.7E-39 T 23-04-2016 SD28_RS07810 595bde37f8ef831f61499b9b7263d086 530 PANTHER PTHR24188 394 525 2.7E-39 T 23-04-2016 SD28_RS07810 595bde37f8ef831f61499b9b7263d086 530 SUPERFAMILY SSF48403 397 526 3.73E-38 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS07675 a04ae0cacd489e0ea94ad125ea2a1e58 235 PANTHER PTHR11922:SF42 41 186 2.8E-41 T 23-04-2016 SD28_RS07675 a04ae0cacd489e0ea94ad125ea2a1e58 235 Gene3D G3DSA:3.40.50.880 37 214 5.8E-43 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS07675 a04ae0cacd489e0ea94ad125ea2a1e58 235 Pfam PF00117 Glutamine amidotransferase class-I 79 188 1.6E-12 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 SD28_RS07675 a04ae0cacd489e0ea94ad125ea2a1e58 235 PANTHER PTHR11922 41 186 2.8E-41 T 23-04-2016 SD28_RS07675 a04ae0cacd489e0ea94ad125ea2a1e58 235 SUPERFAMILY SSF52317 22 206 1.83E-36 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like SD28_RS02440 59fa1af362af67781fee6b1d9faac67f 145 Pfam PF01196 Ribosomal protein L17 20 133 2.6E-32 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02440 59fa1af362af67781fee6b1d9faac67f 145 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 133 2.3E-39 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02440 59fa1af362af67781fee6b1d9faac67f 145 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02440 59fa1af362af67781fee6b1d9faac67f 145 PANTHER PTHR14413:SF5 76 135 3.3E-57 T 23-04-2016 SD28_RS02440 59fa1af362af67781fee6b1d9faac67f 145 PANTHER PTHR14413:SF5 1 58 3.3E-57 T 23-04-2016 SD28_RS02440 59fa1af362af67781fee6b1d9faac67f 145 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 133 25.674 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02440 59fa1af362af67781fee6b1d9faac67f 145 Gene3D G3DSA:3.90.1030.10 1 133 9.4E-47 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02440 59fa1af362af67781fee6b1d9faac67f 145 SUPERFAMILY SSF64263 1 136 5.89E-45 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02440 59fa1af362af67781fee6b1d9faac67f 145 PANTHER PTHR14413 76 135 3.3E-57 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02440 59fa1af362af67781fee6b1d9faac67f 145 PANTHER PTHR14413 1 58 3.3E-57 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06850 7967cf8915464a1279267b0fb1de2c69 288 SUPERFAMILY SSF52768 4 274 8.1E-57 T 23-04-2016 SD28_RS06850 7967cf8915464a1279267b0fb1de2c69 288 Gene3D G3DSA:3.40.800.10 20 276 8.1E-57 T 23-04-2016 IPR023696 Ureohydrolase domain SD28_RS06850 7967cf8915464a1279267b0fb1de2c69 288 Pfam PF00491 Arginase family 16 266 1.5E-46 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 SD28_RS06850 7967cf8915464a1279267b0fb1de2c69 288 PANTHER PTHR11358 59 263 7.9E-54 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 SD28_RS06850 7967cf8915464a1279267b0fb1de2c69 288 PRINTS PR00116 Arginase signature 158 176 1.2E-26 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 SD28_RS06850 7967cf8915464a1279267b0fb1de2c69 288 PRINTS PR00116 Arginase signature 104 131 1.2E-26 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 SD28_RS06850 7967cf8915464a1279267b0fb1de2c69 288 PRINTS PR00116 Arginase signature 208 237 1.2E-26 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 SD28_RS06850 7967cf8915464a1279267b0fb1de2c69 288 PRINTS PR00116 Arginase signature 77 92 1.2E-26 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 SD28_RS06850 7967cf8915464a1279267b0fb1de2c69 288 PANTHER PTHR11358:SF2 59 263 7.9E-54 T 23-04-2016 SD28_RS02075 4b2be1d8b26de9bde2a5a1959851a1b1 158 Pfam PF14316 Domain of unknown function (DUF4381) 8 155 8.4E-34 T 23-04-2016 IPR025489 Protein of unknown function (DUF4381 SD28_RS06640 95a430522b751433bda3b2635073bf82 382 Pfam PF16363 GDP-mannose 4,6 dehydratase 9 356 1.6E-155 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06640 95a430522b751433bda3b2635073bf82 382 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 6 363 2.0E-182 T 23-04-2016 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|UniPathway: UPA00128 SD28_RS06640 95a430522b751433bda3b2635073bf82 382 SUPERFAMILY SSF51735 6 362 7.87E-84 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06640 95a430522b751433bda3b2635073bf82 382 PANTHER PTHR10366 7 285 2.0E-206 T 23-04-2016 SD28_RS06640 95a430522b751433bda3b2635073bf82 382 PANTHER PTHR10366 320 367 2.0E-206 T 23-04-2016 SD28_RS06640 95a430522b751433bda3b2635073bf82 382 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 6 366 55.733 T 23-04-2016 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|UniPathway: UPA00128 SD28_RS06640 95a430522b751433bda3b2635073bf82 382 PANTHER PTHR10366:SF32 7 285 2.0E-206 T 23-04-2016 SD28_RS06640 95a430522b751433bda3b2635073bf82 382 PANTHER PTHR10366:SF32 320 367 2.0E-206 T 23-04-2016 SD28_RS06640 95a430522b751433bda3b2635073bf82 382 Gene3D G3DSA:3.90.25.10 314 372 7.3E-50 T 23-04-2016 SD28_RS06640 95a430522b751433bda3b2635073bf82 382 Gene3D G3DSA:3.90.25.10 196 250 7.3E-50 T 23-04-2016 SD28_RS06640 95a430522b751433bda3b2635073bf82 382 Gene3D G3DSA:3.40.50.720 3 193 2.3E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS04470 4dc73f619963b1184bdd63f9644fe409 370 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 4 102 2.1E-12 T 23-04-2016 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 SD28_RS04470 4dc73f619963b1184bdd63f9644fe409 370 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 126 352 1.8E-13 T 23-04-2016 IPR032095 Saccharopine dehydrogenase, C-terminal SD28_RS04470 4dc73f619963b1184bdd63f9644fe409 370 Gene3D G3DSA:3.40.50.720 1 173 2.7E-25 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS04470 4dc73f619963b1184bdd63f9644fe409 370 SUPERFAMILY SSF55347 127 362 5.17E-44 T 23-04-2016 SD28_RS04470 4dc73f619963b1184bdd63f9644fe409 370 SUPERFAMILY SSF51735 1 177 5.62E-17 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS04790 fe1d2147d8f7c1b727d76a8c442e2f29 249 PANTHER PTHR22602:SF0 8 247 2.6E-28 T 23-04-2016 SD28_RS04790 fe1d2147d8f7c1b727d76a8c442e2f29 249 SUPERFAMILY SSF103025 6 181 4.87E-36 T 23-04-2016 SD28_RS04790 fe1d2147d8f7c1b727d76a8c442e2f29 249 PANTHER PTHR22602 8 247 2.6E-28 T 23-04-2016 SD28_RS04790 fe1d2147d8f7c1b727d76a8c442e2f29 249 Pfam PF01571 Aminomethyltransferase folate-binding domain 9 100 2.8E-7 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal SD28_RS04790 fe1d2147d8f7c1b727d76a8c442e2f29 249 Gene3D G3DSA:3.30.70.1400 10 95 3.0E-21 T 23-04-2016 SD28_RS04790 fe1d2147d8f7c1b727d76a8c442e2f29 249 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 129 192 1.4E-20 T 23-04-2016 IPR017703 YgfZ/GcvT conserved site SD28_RS05845 7d1944928db235a5ecb70af5166ac833 265 Pfam PF01171 PP-loop family 34 197 2.1E-16 T 23-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal SD28_RS05845 7d1944928db235a5ecb70af5166ac833 265 PANTHER PTHR11807:SF16 1 263 4.5E-103 T 23-04-2016 SD28_RS05845 7d1944928db235a5ecb70af5166ac833 265 Hamap MF_01850 tRNA 2-thiocytidine biosynthesis protein TtcA [ttcA]. 3 264 53.656 T 23-04-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 SD28_RS05845 7d1944928db235a5ecb70af5166ac833 265 PANTHER PTHR11807 1 263 4.5E-103 T 23-04-2016 SD28_RS05845 7d1944928db235a5ecb70af5166ac833 265 SUPERFAMILY SSF52402 11 226 2.56E-53 T 23-04-2016 SD28_RS05845 7d1944928db235a5ecb70af5166ac833 265 Gene3D G3DSA:3.40.50.620 17 200 3.0E-21 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS05845 7d1944928db235a5ecb70af5166ac833 265 PIRSF PIRSF004976 1 262 1.1E-68 T 23-04-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 SD28_RS04450 3f4b99676fec46a5055b1ede595b7f48 354 Gene3D G3DSA:3.20.20.100 1 352 1.4E-92 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain SD28_RS04450 3f4b99676fec46a5055b1ede595b7f48 354 PRINTS PR00069 Aldo-keto reductase signature 113 131 2.3E-7 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 SD28_RS04450 3f4b99676fec46a5055b1ede595b7f48 354 PRINTS PR00069 Aldo-keto reductase signature 168 185 2.3E-7 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 SD28_RS04450 3f4b99676fec46a5055b1ede595b7f48 354 SUPERFAMILY SSF51430 1 353 7.99E-94 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain SD28_RS04450 3f4b99676fec46a5055b1ede595b7f48 354 PANTHER PTHR11732 1 131 3.4E-122 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta SD28_RS04450 3f4b99676fec46a5055b1ede595b7f48 354 PANTHER PTHR11732 285 353 3.4E-122 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta SD28_RS04450 3f4b99676fec46a5055b1ede595b7f48 354 PANTHER PTHR11732 156 269 3.4E-122 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta SD28_RS04450 3f4b99676fec46a5055b1ede595b7f48 354 Pfam PF00248 Aldo/keto reductase family 15 346 1.0E-66 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain SD28_RS04450 3f4b99676fec46a5055b1ede595b7f48 354 PANTHER PTHR11732:SF112 1 131 3.4E-122 T 23-04-2016 SD28_RS04450 3f4b99676fec46a5055b1ede595b7f48 354 PANTHER PTHR11732:SF112 285 353 3.4E-122 T 23-04-2016 SD28_RS04450 3f4b99676fec46a5055b1ede595b7f48 354 PANTHER PTHR11732:SF112 156 269 3.4E-122 T 23-04-2016 SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 SUPERFAMILY SSF54980 302 387 1.15E-15 T 23-04-2016 IPR009022 Elongation factor G, III-V domain SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 SUPERFAMILY SSF52540 3 220 4.06E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 Gene3D G3DSA:2.40.50.250 483 577 6.8E-42 T 23-04-2016 SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 Pfam PF03144 Elongation factor Tu domain 2 219 289 1.5E-7 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 Pfam PF00009 Elongation factor Tu GTP binding domain 3 192 1.2E-54 T 23-04-2016 SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 1.5E-289 T 23-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 Gene3D G3DSA:3.30.70.870 304 398 1.0E-38 T 23-04-2016 SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 SUPERFAMILY SSF50447 181 300 3.76E-27 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 PANTHER PTHR23115:SF14 4 593 9.8E-294 T 23-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 Gene3D G3DSA:3.30.70.240 399 478 1.8E-30 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 Pfam PF00679 Elongation factor G C-terminus 397 481 1.5E-21 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 PANTHER PTHR23115 4 593 9.8E-294 T 23-04-2016 SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 Gene3D G3DSA:3.40.50.300 3 205 2.9E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 PRINTS PR00315 GTP-binding elongation factor signature 123 132 2.3E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 PRINTS PR00315 GTP-binding elongation factor signature 87 98 2.3E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 PRINTS PR00315 GTP-binding elongation factor signature 7 20 2.3E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 PRINTS PR00315 GTP-binding elongation factor signature 51 59 2.3E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 PRINTS PR00315 GTP-binding elongation factor signature 71 81 2.3E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 SUPERFAMILY SSF54980 398 512 1.82E-26 T 23-04-2016 IPR009022 Elongation factor G, III-V domain SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 134 9.0E-26 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 SD28_RS04910 14ed0653a80b72298ce81cbc34c1b865 605 Gene3D G3DSA:2.40.30.10 206 303 1.9E-25 T 23-04-2016 SD28_RS02130 6ef1bb959bed0f15a2b39bd714128fd0 515 Pfam PF01808 AICARFT/IMPCHase bienzyme 136 447 4.5E-120 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 SD28_RS02130 6ef1bb959bed0f15a2b39bd714128fd0 515 SMART SM00798 135 448 1.4E-204 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 SD28_RS02130 6ef1bb959bed0f15a2b39bd714128fd0 515 Pfam PF02142 MGS-like domain 16 129 5.4E-25 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain SD28_RS02130 6ef1bb959bed0f15a2b39bd714128fd0 515 PANTHER PTHR11692 2 515 3.8E-291 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 SD28_RS02130 6ef1bb959bed0f15a2b39bd714128fd0 515 Gene3D G3DSA:3.40.140.20 366 505 1.1E-54 T 23-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 SD28_RS02130 6ef1bb959bed0f15a2b39bd714128fd0 515 Gene3D G3DSA:3.40.140.20 240 355 3.4E-49 T 23-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 SD28_RS02130 6ef1bb959bed0f15a2b39bd714128fd0 515 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5 515 2.0E-204 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 SD28_RS02130 6ef1bb959bed0f15a2b39bd714128fd0 515 SUPERFAMILY SSF53927 210 515 5.31E-127 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 SD28_RS02130 6ef1bb959bed0f15a2b39bd714128fd0 515 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 4 515 43.267 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 SD28_RS02130 6ef1bb959bed0f15a2b39bd714128fd0 515 Gene3D G3DSA:3.40.50.1380 2 188 4.3E-82 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain SD28_RS02130 6ef1bb959bed0f15a2b39bd714128fd0 515 PANTHER PTHR11692:SF2 2 515 3.8E-291 T 23-04-2016 SD28_RS02130 6ef1bb959bed0f15a2b39bd714128fd0 515 PIRSF PIRSF000414 1 515 2.8E-217 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 SD28_RS02130 6ef1bb959bed0f15a2b39bd714128fd0 515 SUPERFAMILY SSF52335 4 195 6.87E-70 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain SD28_RS02130 6ef1bb959bed0f15a2b39bd714128fd0 515 SMART SM00851 16 130 4.4E-51 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain SD28_RS00730 d0c572de06a65c95733c12ee2fa7bc07 434 Pfam PF07690 Major Facilitator Superfamily 28 358 1.2E-30 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS00730 d0c572de06a65c95733c12ee2fa7bc07 434 PANTHER PTHR23512:SF6 11 434 1.1E-80 T 23-04-2016 SD28_RS00730 d0c572de06a65c95733c12ee2fa7bc07 434 SUPERFAMILY SSF103473 8 377 2.62E-50 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS00730 d0c572de06a65c95733c12ee2fa7bc07 434 SUPERFAMILY SSF103473 406 430 2.62E-50 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS00730 d0c572de06a65c95733c12ee2fa7bc07 434 PANTHER PTHR23512 11 434 1.1E-80 T 23-04-2016 SD28_RS00730 d0c572de06a65c95733c12ee2fa7bc07 434 Gene3D G3DSA:1.20.1250.20 12 205 1.7E-22 T 23-04-2016 SD28_RS00730 d0c572de06a65c95733c12ee2fa7bc07 434 Gene3D G3DSA:1.20.1250.20 218 424 2.5E-14 T 23-04-2016 SD28_RS06365 0aa28b4f5fc7c891d2dbd893e0bfd456 455 PANTHER PTHR11773:SF2 1 439 4.8E-192 T 23-04-2016 SD28_RS06365 0aa28b4f5fc7c891d2dbd893e0bfd456 455 PANTHER PTHR11773 1 439 4.8E-192 T 23-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 SD28_RS06365 0aa28b4f5fc7c891d2dbd893e0bfd456 455 Pfam PF02347 Glycine cleavage system P-protein 2 440 2.1E-126 T 23-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 SD28_RS06365 0aa28b4f5fc7c891d2dbd893e0bfd456 455 Gene3D G3DSA:3.40.640.10 89 338 3.8E-22 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS06365 0aa28b4f5fc7c891d2dbd893e0bfd456 455 Hamap MF_00712 Probable glycine dehydrogenase (decarboxylating) subunit 1 [gcvPA]. 1 449 43.944 T 23-04-2016 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 SD28_RS06365 0aa28b4f5fc7c891d2dbd893e0bfd456 455 PIRSF PIRSF006815 1 450 1.1E-165 T 23-04-2016 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 SD28_RS06365 0aa28b4f5fc7c891d2dbd893e0bfd456 455 SUPERFAMILY SSF53383 1 450 1.57E-110 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS01660 0c6c50b40f29d1da9273d76df6165acb 396 PANTHER PTHR10314 6 395 2.2E-227 T 23-04-2016 SD28_RS01660 0c6c50b40f29d1da9273d76df6165acb 396 PIRSF PIRSF001413 1 396 5.1E-171 T 23-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 SD28_RS01660 0c6c50b40f29d1da9273d76df6165acb 396 SUPERFAMILY SSF53686 4 389 5.76E-141 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme SD28_RS01660 0c6c50b40f29d1da9273d76df6165acb 396 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 1 390 50.048 T 23-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 SD28_RS01660 0c6c50b40f29d1da9273d76df6165acb 396 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 7 388 4.0E-193 T 23-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 SD28_RS01660 0c6c50b40f29d1da9273d76df6165acb 396 PANTHER PTHR10314:SF3 6 395 2.2E-227 T 23-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 SD28_RS01660 0c6c50b40f29d1da9273d76df6165acb 396 Gene3D G3DSA:3.40.50.1100 176 392 2.4E-94 T 23-04-2016 SD28_RS01660 0c6c50b40f29d1da9273d76df6165acb 396 Gene3D G3DSA:3.40.50.1100 96 175 7.6E-22 T 23-04-2016 SD28_RS01660 0c6c50b40f29d1da9273d76df6165acb 396 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 79 93 - T 23-04-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 SD28_RS01660 0c6c50b40f29d1da9273d76df6165acb 396 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 51 373 1.0E-49 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme SD28_RS05930 238daabbdd3dca815cc6f2cea538ad4c 440 Gene3D G3DSA:1.10.3210.10 13 219 3.1E-60 T 23-04-2016 IPR006674 HD domain SD28_RS05930 238daabbdd3dca815cc6f2cea538ad4c 440 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 25 428 1.0E-104 T 23-04-2016 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 SD28_RS05930 238daabbdd3dca815cc6f2cea538ad4c 440 Gene3D G3DSA:1.10.3550.10 344 425 5.3E-5 T 23-04-2016 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal domain SD28_RS05930 238daabbdd3dca815cc6f2cea538ad4c 440 PANTHER PTHR11373 24 163 3.8E-41 T 23-04-2016 SD28_RS05930 238daabbdd3dca815cc6f2cea538ad4c 440 Pfam PF01966 HD domain 61 142 1.9E-15 T 23-04-2016 IPR006674 HD domain SD28_RS05930 238daabbdd3dca815cc6f2cea538ad4c 440 Pfam PF13286 Phosphohydrolase-associated domain 334 425 9.2E-19 T 23-04-2016 IPR026875 Phosphohydrolase-associated domain SD28_RS05930 238daabbdd3dca815cc6f2cea538ad4c 440 SUPERFAMILY SSF109604 201 430 2.51E-67 T 23-04-2016 SD28_RS05930 238daabbdd3dca815cc6f2cea538ad4c 440 SUPERFAMILY SSF109604 24 166 2.51E-67 T 23-04-2016 SD28_RS05930 238daabbdd3dca815cc6f2cea538ad4c 440 SMART SM00471 57 233 5.7E-14 T 23-04-2016 IPR003607 HD/PDEase domain SD28_RS05930 238daabbdd3dca815cc6f2cea538ad4c 440 Gene3D G3DSA:1.10.3410.10 220 343 5.3E-14 T 23-04-2016 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain SD28_RS04505 3f6b8bbe1e24c1c801f329a3dda188a1 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 8 417 52.035 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 SD28_RS04505 3f6b8bbe1e24c1c801f329a3dda188a1 417 Pfam PF00464 Serine hydroxymethyltransferase 9 385 2.5E-173 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 SD28_RS04505 3f6b8bbe1e24c1c801f329a3dda188a1 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 222 238 - T 23-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 SD28_RS04505 3f6b8bbe1e24c1c801f329a3dda188a1 417 PANTHER PTHR11680:SF9 1 416 6.5E-263 T 23-04-2016 SD28_RS04505 3f6b8bbe1e24c1c801f329a3dda188a1 417 Gene3D G3DSA:3.90.1150.10 286 417 9.5E-51 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS04505 3f6b8bbe1e24c1c801f329a3dda188a1 417 PANTHER PTHR11680 1 416 6.5E-263 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 SD28_RS04505 3f6b8bbe1e24c1c801f329a3dda188a1 417 Gene3D G3DSA:3.40.640.10 38 285 1.8E-103 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS04505 3f6b8bbe1e24c1c801f329a3dda188a1 417 PIRSF PIRSF000412 1 416 1.1E-162 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 SD28_RS04505 3f6b8bbe1e24c1c801f329a3dda188a1 417 SUPERFAMILY SSF53383 7 416 2.55E-177 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS03830 66a597714cafadc7add5fac637e85f2b 161 SUPERFAMILY SSF52788 2 155 2.62E-41 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily SD28_RS03830 66a597714cafadc7add5fac637e85f2b 161 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 6 23 1.7E-15 T 23-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 SD28_RS03830 66a597714cafadc7add5fac637e85f2b 161 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 86 101 1.7E-15 T 23-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 SD28_RS03830 66a597714cafadc7add5fac637e85f2b 161 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 128 143 1.7E-15 T 23-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 SD28_RS03830 66a597714cafadc7add5fac637e85f2b 161 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 52 68 1.7E-15 T 23-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 SD28_RS03830 66a597714cafadc7add5fac637e85f2b 161 Gene3D G3DSA:3.40.50.270 4 158 1.0E-45 T 23-04-2016 SD28_RS03830 66a597714cafadc7add5fac637e85f2b 161 SMART SM00226 4 154 6.7E-33 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily SD28_RS03830 66a597714cafadc7add5fac637e85f2b 161 PANTHER PTHR11717 4 158 9.9E-41 T 23-04-2016 SD28_RS03830 66a597714cafadc7add5fac637e85f2b 161 PANTHER PTHR11717:SF7 4 158 9.9E-41 T 23-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 SD28_RS03830 66a597714cafadc7add5fac637e85f2b 161 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 6 152 5.2E-33 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily SD28_RS03465 41aac1a2f8b76a12f2bf6087b74b0117 116 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 97 114 - T 23-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site SD28_RS03465 41aac1a2f8b76a12f2bf6087b74b0117 116 Pfam PF01521 Iron-sulphur cluster biosynthesis 11 111 5.3E-19 T 23-04-2016 IPR000361 FeS cluster biogenesis SD28_RS03465 41aac1a2f8b76a12f2bf6087b74b0117 116 Gene3D G3DSA:2.60.300.12 10 105 2.1E-30 T 23-04-2016 IPR000361 FeS cluster biogenesis SD28_RS03465 41aac1a2f8b76a12f2bf6087b74b0117 116 PANTHER PTHR10072 11 116 3.3E-44 T 23-04-2016 SD28_RS03465 41aac1a2f8b76a12f2bf6087b74b0117 116 SUPERFAMILY SSF89360 11 105 7.85E-30 T 23-04-2016 IPR000361 FeS cluster biogenesis SD28_RS03465 41aac1a2f8b76a12f2bf6087b74b0117 116 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 11 116 2.4E-38 T 23-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 SD28_RS03465 41aac1a2f8b76a12f2bf6087b74b0117 116 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 116 35.273 T 23-04-2016 IPR023063 FeS cluster insertion protein ErpA GO:0016226 SD28_RS07550 10cbf8d96966051f999aced727322d1e 208 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 16 201 1.7E-52 T 23-04-2016 IPR006070 YrdC-like domain GO:0003725 SD28_RS07550 10cbf8d96966051f999aced727322d1e 208 Gene3D G3DSA:3.90.870.10 7 203 8.2E-53 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain SD28_RS07550 10cbf8d96966051f999aced727322d1e 208 PANTHER PTHR17490 1 203 6.7E-60 T 23-04-2016 SD28_RS07550 10cbf8d96966051f999aced727322d1e 208 Pfam PF01300 Telomere recombination 23 198 7.1E-42 T 23-04-2016 IPR006070 YrdC-like domain GO:0003725 SD28_RS07550 10cbf8d96966051f999aced727322d1e 208 PANTHER PTHR17490:SF7 1 203 6.7E-60 T 23-04-2016 SD28_RS07550 10cbf8d96966051f999aced727322d1e 208 SUPERFAMILY SSF55821 2 203 2.53E-52 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain SD28_RS06315 5d032825fbfb95af1bc8102947e4d877 382 Gene3D G3DSA:3.60.60.10 25 364 2.5E-87 T 23-04-2016 IPR003199 Choloylglycine hydrolase/Peptidase C59 family GO:0016811 SD28_RS06315 5d032825fbfb95af1bc8102947e4d877 382 SUPERFAMILY SSF56235 25 363 7.72E-80 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal SD28_RS06315 5d032825fbfb95af1bc8102947e4d877 382 PANTHER PTHR35527:SF1 1 369 1.8E-67 T 23-04-2016 SD28_RS06315 5d032825fbfb95af1bc8102947e4d877 382 PANTHER PTHR35527 1 369 1.8E-67 T 23-04-2016 SD28_RS06315 5d032825fbfb95af1bc8102947e4d877 382 Pfam PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family 25 358 3.4E-58 T 23-04-2016 IPR029132 Choloylglycine hydrolase/NAAA C-terminal SD28_RS04240 78006e6a0160d85e1ce90aba4ca26dec 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 2.9E-49 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 SD28_RS04240 78006e6a0160d85e1ce90aba4ca26dec 118 PANTHER PTHR10986:SF12 2 117 7.4E-64 T 23-04-2016 SD28_RS04240 78006e6a0160d85e1ce90aba4ca26dec 118 Gene3D G3DSA:1.10.1900.20 55 117 2.1E-29 T 23-04-2016 SD28_RS04240 78006e6a0160d85e1ce90aba4ca26dec 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 29.918 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 SD28_RS04240 78006e6a0160d85e1ce90aba4ca26dec 118 SUPERFAMILY SSF74731 3 117 6.8E-50 T 23-04-2016 SD28_RS04240 78006e6a0160d85e1ce90aba4ca26dec 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 SD28_RS04240 78006e6a0160d85e1ce90aba4ca26dec 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 3.1E-39 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 SD28_RS04240 78006e6a0160d85e1ce90aba4ca26dec 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 3.1E-39 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 SD28_RS04240 78006e6a0160d85e1ce90aba4ca26dec 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 3.1E-39 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 SD28_RS04240 78006e6a0160d85e1ce90aba4ca26dec 118 PANTHER PTHR10986 2 117 7.4E-64 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 SD28_RS04240 78006e6a0160d85e1ce90aba4ca26dec 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 1.0E-21 T 23-04-2016 SD28_RS04240 78006e6a0160d85e1ce90aba4ca26dec 118 Pfam PF00453 Ribosomal protein L20 3 108 6.1E-49 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 SD28_RS00465 1320518bd2546b6554adcd937fe124d9 314 Pfam PF08349 Protein of unknown function (DUF1722) 191 308 5.2E-25 T 23-04-2016 IPR013560 Domain of unknown function DUF1722 SD28_RS00465 1320518bd2546b6554adcd937fe124d9 314 Pfam PF04463 Protein of unknown function (DUF523) 6 147 2.8E-29 T 23-04-2016 IPR007553 Domain of unknown function DUF523 SD28_RS00465 1320518bd2546b6554adcd937fe124d9 314 PANTHER PTHR30087:SF0 1 314 3.0E-84 T 23-04-2016 SD28_RS00465 1320518bd2546b6554adcd937fe124d9 314 PANTHER PTHR30087 1 314 3.0E-84 T 23-04-2016 SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 450 469 4.9E-49 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 254 268 4.9E-49 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 222 236 4.9E-49 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 288 315 4.9E-49 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 190 210 4.9E-49 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 SMART SM00760 400 469 4.0E-41 T 23-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 Pfam PF11638 DnaA N-terminal domain 1 61 3.8E-12 T 23-04-2016 IPR024633 DnaA N-terminal domain SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 SUPERFAMILY SSF52540 156 368 1.32E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 Gene3D G3DSA:1.10.8.60 323 390 3.9E-26 T 23-04-2016 SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 PANTHER PTHR30050:SF2 155 492 2.0E-184 T 23-04-2016 SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 PANTHER PTHR30050:SF2 1 99 2.0E-184 T 23-04-2016 SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 401 469 2.5E-30 T 23-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 Pfam PF00308 Bacterial dnaA protein 157 373 1.6E-87 T 23-04-2016 IPR013317 Chromosomal replication initiator protein DnaA SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 Gene3D G3DSA:3.40.50.300 147 319 3.7E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 SMART SM00382 189 315 4.7E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 1 491 31.947 T 23-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 4 490 7.9E-163 T 23-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 Gene3D G3DSA:1.10.1750.10 391 491 3.2E-39 T 23-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 PANTHER PTHR30050 155 492 2.0E-184 T 23-04-2016 SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 PANTHER PTHR30050 1 99 2.0E-184 T 23-04-2016 SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 SUPERFAMILY SSF48295 388 491 9.94E-36 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 SD28_RS01335 eb268b4f56db5550391e1cc9b050932d 492 ProSitePatterns PS01008 DnaA protein signature. 450 469 - T 23-04-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 SD28_RS06690 eabfe36a59e39e13f91828a694d01003 342 PANTHER PTHR10366 2 342 1.3E-154 T 23-04-2016 SD28_RS06690 eabfe36a59e39e13f91828a694d01003 342 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 325 2.7E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06690 eabfe36a59e39e13f91828a694d01003 342 PANTHER PTHR10366:SF39 2 342 1.3E-154 T 23-04-2016 SD28_RS06690 eabfe36a59e39e13f91828a694d01003 342 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 336 1.0E-139 T 23-04-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|UniPathway: UPA00214 SD28_RS06690 eabfe36a59e39e13f91828a694d01003 342 SUPERFAMILY SSF51735 3 337 4.96E-93 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06690 eabfe36a59e39e13f91828a694d01003 342 Gene3D G3DSA:3.40.50.720 2 179 3.6E-57 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06690 eabfe36a59e39e13f91828a694d01003 342 Gene3D G3DSA:3.90.25.10 265 339 2.7E-53 T 23-04-2016 SD28_RS06690 eabfe36a59e39e13f91828a694d01003 342 Gene3D G3DSA:3.90.25.10 180 231 2.7E-53 T 23-04-2016 SD28_RS02335 f78048806f48967012bb96e3d1cee1b4 111 PANTHER PTHR13501 1 109 1.7E-49 T 23-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 SD28_RS02335 f78048806f48967012bb96e3d1cee1b4 111 Pfam PF00237 Ribosomal protein L22p/L17e 9 107 4.2E-32 T 23-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 SD28_RS02335 f78048806f48967012bb96e3d1cee1b4 111 Gene3D G3DSA:3.90.470.10 1 110 3.8E-43 T 23-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 SD28_RS02335 f78048806f48967012bb96e3d1cee1b4 111 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 23-04-2016 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02335 f78048806f48967012bb96e3d1cee1b4 111 SUPERFAMILY SSF54843 1 110 3.27E-43 T 23-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 SD28_RS02335 f78048806f48967012bb96e3d1cee1b4 111 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 28.194 T 23-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 SD28_RS02335 f78048806f48967012bb96e3d1cee1b4 111 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 2.0E-46 T 23-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 SD28_RS02530 57316a710b72a8853b357d2ac1189f92 510 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 400 487 9.2E-21 T 23-04-2016 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 SD28_RS02530 57316a710b72a8853b357d2ac1189f92 510 Gene3D G3DSA:3.50.50.60 304 305 8.2E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS02530 57316a710b72a8853b357d2ac1189f92 510 Gene3D G3DSA:3.50.50.60 2 270 8.2E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS02530 57316a710b72a8853b357d2ac1189f92 510 PANTHER PTHR11985:SF1 1 498 8.4E-175 T 23-04-2016 SD28_RS02530 57316a710b72a8853b357d2ac1189f92 510 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 321 327 3.0E-24 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 SD28_RS02530 57316a710b72a8853b357d2ac1189f92 510 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 34 46 3.0E-24 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 SD28_RS02530 57316a710b72a8853b357d2ac1189f92 510 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 79 91 3.0E-24 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 SD28_RS02530 57316a710b72a8853b357d2ac1189f92 510 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 18 28 3.0E-24 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 SD28_RS02530 57316a710b72a8853b357d2ac1189f92 510 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 352 364 3.0E-24 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 SD28_RS02530 57316a710b72a8853b357d2ac1189f92 510 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 5 17 3.0E-24 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 SD28_RS02530 57316a710b72a8853b357d2ac1189f92 510 PANTHER PTHR11985 1 498 8.4E-175 T 23-04-2016 SD28_RS02530 57316a710b72a8853b357d2ac1189f92 510 SUPERFAMILY SSF51905 4 330 4.07E-28 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS02530 57316a710b72a8853b357d2ac1189f92 510 Pfam PF01266 FAD dependent oxidoreductase 6 330 1.8E-41 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 SD28_RS00630 016769633f83cc0cf573c9f4edbebe46 172 SUPERFAMILY SSF50814 14 172 7.79E-50 T 23-04-2016 IPR011038 Calycin-like SD28_RS00630 016769633f83cc0cf573c9f4edbebe46 172 ProSitePatterns PS00213 Lipocalin signature. 31 44 - T 23-04-2016 IPR022272 Lipocalin family conserved site SD28_RS00630 016769633f83cc0cf573c9f4edbebe46 172 PANTHER PTHR10612 6 172 1.9E-46 T 23-04-2016 SD28_RS00630 016769633f83cc0cf573c9f4edbebe46 172 Pfam PF08212 Lipocalin-like domain 34 172 1.0E-42 T 23-04-2016 IPR000566 Lipocalin/cytosolic fatty-acid binding domain SD28_RS00630 016769633f83cc0cf573c9f4edbebe46 172 PIRSF PIRSF036893 1 172 9.3E-45 T 23-04-2016 IPR022271 Lipocalin, ApoD type SD28_RS00630 016769633f83cc0cf573c9f4edbebe46 172 PRINTS PR01171 Bacterial lipocalin signature 49 65 3.6E-31 T 23-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 SD28_RS00630 016769633f83cc0cf573c9f4edbebe46 172 PRINTS PR01171 Bacterial lipocalin signature 102 116 3.6E-31 T 23-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 SD28_RS00630 016769633f83cc0cf573c9f4edbebe46 172 PRINTS PR01171 Bacterial lipocalin signature 119 127 3.6E-31 T 23-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 SD28_RS00630 016769633f83cc0cf573c9f4edbebe46 172 PRINTS PR01171 Bacterial lipocalin signature 161 171 3.6E-31 T 23-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 SD28_RS00630 016769633f83cc0cf573c9f4edbebe46 172 PRINTS PR01171 Bacterial lipocalin signature 68 77 3.6E-31 T 23-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 SD28_RS00630 016769633f83cc0cf573c9f4edbebe46 172 PRINTS PR01171 Bacterial lipocalin signature 32 46 3.6E-31 T 23-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 SD28_RS00630 016769633f83cc0cf573c9f4edbebe46 172 PRINTS PR01171 Bacterial lipocalin signature 134 145 3.6E-31 T 23-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 SD28_RS00630 016769633f83cc0cf573c9f4edbebe46 172 Gene3D G3DSA:2.40.128.20 5 172 1.5E-55 T 23-04-2016 IPR012674 Calycin SD28_RS06130 62be76582c4429a659dc82579f2d26bf 84 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 84 26.947 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06130 62be76582c4429a659dc82579f2d26bf 84 SUPERFAMILY SSF110324 2 80 3.49E-34 T 23-04-2016 SD28_RS06130 62be76582c4429a659dc82579f2d26bf 84 PRINTS PR00063 Ribosomal protein L27 signature 54 78 6.4E-38 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06130 62be76582c4429a659dc82579f2d26bf 84 PRINTS PR00063 Ribosomal protein L27 signature 4 28 6.4E-38 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06130 62be76582c4429a659dc82579f2d26bf 84 PRINTS PR00063 Ribosomal protein L27 signature 29 53 6.4E-38 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06130 62be76582c4429a659dc82579f2d26bf 84 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 70 1.0E-16 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06130 62be76582c4429a659dc82579f2d26bf 84 PANTHER PTHR15893 1 83 1.2E-48 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06130 62be76582c4429a659dc82579f2d26bf 84 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 7.8E-40 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06130 62be76582c4429a659dc82579f2d26bf 84 Gene3D G3DSA:2.40.50.100 20 82 1.6E-30 T 23-04-2016 SD28_RS06130 62be76582c4429a659dc82579f2d26bf 84 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 23-04-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06130 62be76582c4429a659dc82579f2d26bf 84 Pfam PF01016 Ribosomal L27 protein 2 82 4.7E-39 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06525 0cf27e7c1fb92a116b216122bcd393ab 217 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 213 30.322 T 23-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 SD28_RS06525 0cf27e7c1fb92a116b216122bcd393ab 217 Pfam PF14520 Helix-hairpin-helix domain 72 128 3.2E-13 T 23-04-2016 SD28_RS06525 0cf27e7c1fb92a116b216122bcd393ab 217 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 212 6.1E-54 T 23-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 SD28_RS06525 0cf27e7c1fb92a116b216122bcd393ab 217 PANTHER PTHR33796 2 215 3.7E-70 T 23-04-2016 SD28_RS06525 0cf27e7c1fb92a116b216122bcd393ab 217 Pfam PF01330 RuvA N terminal domain 1 62 8.5E-24 T 23-04-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 SD28_RS06525 0cf27e7c1fb92a116b216122bcd393ab 217 Pfam PF07499 RuvA, C-terminal domain 170 210 1.9E-11 T 23-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 SD28_RS06525 0cf27e7c1fb92a116b216122bcd393ab 217 SUPERFAMILY SSF50249 1 63 5.25E-19 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS06525 0cf27e7c1fb92a116b216122bcd393ab 217 SUPERFAMILY SSF46929 167 211 1.02E-8 T 23-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 SD28_RS06525 0cf27e7c1fb92a116b216122bcd393ab 217 Gene3D G3DSA:1.10.150.20 68 137 2.5E-26 T 23-04-2016 SD28_RS06525 0cf27e7c1fb92a116b216122bcd393ab 217 Gene3D G3DSA:1.10.8.10 167 210 1.4E-13 T 23-04-2016 SD28_RS06525 0cf27e7c1fb92a116b216122bcd393ab 217 SMART SM00278 108 127 0.13 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 SD28_RS06525 0cf27e7c1fb92a116b216122bcd393ab 217 SMART SM00278 73 92 1.4 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 SD28_RS06525 0cf27e7c1fb92a116b216122bcd393ab 217 Gene3D G3DSA:2.40.50.140 1 66 8.8E-28 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS06525 0cf27e7c1fb92a116b216122bcd393ab 217 SUPERFAMILY SSF47781 67 137 3.34E-20 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 SD28_RS02775 ec60e461f57e7795df5734ac10c49554 488 PANTHER PTHR11819:SF148 4 486 4.1E-149 T 23-04-2016 SD28_RS02775 ec60e461f57e7795df5734ac10c49554 488 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 8 486 1.0E-176 T 23-04-2016 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 SD28_RS02775 ec60e461f57e7795df5734ac10c49554 488 Pfam PF00474 Sodium:solute symporter family 35 430 7.0E-94 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 SD28_RS02775 ec60e461f57e7795df5734ac10c49554 488 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 430 6.4E-86 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 SD28_RS02775 ec60e461f57e7795df5734ac10c49554 488 PANTHER PTHR11819 4 486 4.1E-149 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 SD28_RS02775 ec60e461f57e7795df5734ac10c49554 488 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 23-04-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 SD28_RS00985 935e12b54102c001e968442e1849f0d0 172 Hamap MF_00163 Peptide deformylase [def]. 1 165 28.368 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 SD28_RS00985 935e12b54102c001e968442e1849f0d0 172 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 3 162 3.9E-48 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 SD28_RS00985 935e12b54102c001e968442e1849f0d0 172 Gene3D G3DSA:3.90.45.10 4 169 1.9E-57 T 23-04-2016 IPR023635 Peptide deformylase SD28_RS00985 935e12b54102c001e968442e1849f0d0 172 PANTHER PTHR10458 1 165 2.8E-58 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 SD28_RS00985 935e12b54102c001e968442e1849f0d0 172 PIRSF PIRSF004749 1 172 2.1E-50 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 SD28_RS00985 935e12b54102c001e968442e1849f0d0 172 Pfam PF01327 Polypeptide deformylase 3 155 7.6E-48 T 23-04-2016 IPR023635 Peptide deformylase SD28_RS00985 935e12b54102c001e968442e1849f0d0 172 SUPERFAMILY SSF56420 1 166 2.62E-52 T 23-04-2016 IPR023635 Peptide deformylase SD28_RS00985 935e12b54102c001e968442e1849f0d0 172 PRINTS PR01576 Peptide deformylase signature 34 63 2.3E-30 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 SD28_RS00985 935e12b54102c001e968442e1849f0d0 172 PRINTS PR01576 Peptide deformylase signature 104 122 2.3E-30 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 SD28_RS00985 935e12b54102c001e968442e1849f0d0 172 PRINTS PR01576 Peptide deformylase signature 92 103 2.3E-30 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 SD28_RS00985 935e12b54102c001e968442e1849f0d0 172 PRINTS PR01576 Peptide deformylase signature 123 152 2.3E-30 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 SD28_RS06570 9efe53fb03ee99f4db451dccbaf83fb4 405 SUPERFAMILY SSF52540 11 337 7.97E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06570 9efe53fb03ee99f4db451dccbaf83fb4 405 Gene3D G3DSA:3.30.2060.10 129 202 4.1E-9 T 23-04-2016 SD28_RS00565 ee3f396e19452e04d2cce0d6a9050ea2 106 Pfam PF13627 Prokaryotic lipoprotein-attachment site 4 26 6.5E-8 T 23-04-2016 IPR032831 Prokaryotic lipoprotein-attachment site SD28_RS00590 ec069b77f894263a2a618a885ac59fdb 90 Gene3D G3DSA:3.30.1070.10 38 89 1.6E-9 T 23-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 SD28_RS00590 ec069b77f894263a2a618a885ac59fdb 90 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 6 88 4.6E-17 T 23-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 SD28_RS00590 ec069b77f894263a2a618a885ac59fdb 90 SUPERFAMILY SSF55229 39 88 6.02E-8 T 23-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 SD28_RS00590 ec069b77f894263a2a618a885ac59fdb 90 Pfam PF03776 Septum formation topological specificity factor MinE 14 89 2.9E-19 T 23-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 SD28_RS00590 ec069b77f894263a2a618a885ac59fdb 90 Hamap MF_00262 Cell division topological specificity factor [minE]. 1 90 17.374 T 23-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 SD28_RS00340 09b435712af61886cdc1e3e0349e1b83 213 PANTHER PTHR14969 28 200 1.1E-14 T 23-04-2016 SD28_RS00340 09b435712af61886cdc1e3e0349e1b83 213 SMART SM00014 88 203 2.9E-10 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase SD28_RS00340 09b435712af61886cdc1e3e0349e1b83 213 SUPERFAMILY SSF48317 15 206 1.83E-31 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase SD28_RS00340 09b435712af61886cdc1e3e0349e1b83 213 Pfam PF01569 PAP2 superfamily 91 207 2.1E-22 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase SD28_RS00340 09b435712af61886cdc1e3e0349e1b83 213 Gene3D G3DSA:1.20.144.10 60 201 2.7E-24 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase SD28_RS04970 2772d78c978f3741c57c4cfef80bb08b 240 Pfam PF13545 Crp-like helix-turn-helix domain 150 222 1.3E-7 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 SD28_RS04970 2772d78c978f3741c57c4cfef80bb08b 240 PANTHER PTHR24567 5 228 2.1E-20 T 23-04-2016 SD28_RS04970 2772d78c978f3741c57c4cfef80bb08b 240 Gene3D G3DSA:2.60.120.10 6 145 4.1E-20 T 23-04-2016 IPR014710 RmlC-like jelly roll fold SD28_RS04970 2772d78c978f3741c57c4cfef80bb08b 240 Gene3D G3DSA:1.10.10.10 149 224 8.5E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS04970 2772d78c978f3741c57c4cfef80bb08b 240 SUPERFAMILY SSF46785 148 224 5.75E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS04970 2772d78c978f3741c57c4cfef80bb08b 240 Pfam PF00027 Cyclic nucleotide-binding domain 32 115 3.8E-7 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain SD28_RS04970 2772d78c978f3741c57c4cfef80bb08b 240 SUPERFAMILY SSF51206 5 144 2.36E-21 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like SD28_RS04970 2772d78c978f3741c57c4cfef80bb08b 240 SMART SM00100 11 130 8.3E-10 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain SD28_RS04775 7ef06ae811406668bec1af696eaa94da 191 SUPERFAMILY SSF52499 2 190 3.27E-49 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 SD28_RS04775 7ef06ae811406668bec1af696eaa94da 191 PANTHER PTHR11080 3 190 2.1E-36 T 23-04-2016 SD28_RS04775 7ef06ae811406668bec1af696eaa94da 191 Gene3D G3DSA:3.40.50.850 1 190 2.2E-49 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 SD28_RS04775 7ef06ae811406668bec1af696eaa94da 191 Pfam PF00857 Isochorismatase family 5 186 3.8E-39 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 SD28_RS00335 f273ebeed143b51b16980bf1b1705f79 174 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 26 164 4.0E-20 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 SD28_RS00335 f273ebeed143b51b16980bf1b1705f79 174 Gene3D G3DSA:3.40.80.10 2 172 1.9E-64 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 SD28_RS00335 f273ebeed143b51b16980bf1b1705f79 174 PANTHER PTHR30417:SF4 1 170 5.5E-69 T 23-04-2016 SD28_RS00335 f273ebeed143b51b16980bf1b1705f79 174 SUPERFAMILY SSF55846 2 171 2.09E-61 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 SD28_RS00335 f273ebeed143b51b16980bf1b1705f79 174 SMART SM00644 15 164 2.8E-39 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 SD28_RS00335 f273ebeed143b51b16980bf1b1705f79 174 PANTHER PTHR30417 1 170 5.5E-69 T 23-04-2016 SD28_RS07455 d517ea85cf83556bfaf9f9ca6ccd9f35 67 Pfam PF13359 DDE superfamily endonuclease 15 62 2.9E-6 T 23-04-2016 IPR027806 Harbinger transposase-derived nuclease domain SD28_RS07700 44a7c7a408d4246f53aab3d03668d213 476 Pfam PF04932 O-Antigen ligase 235 370 2.2E-11 T 23-04-2016 IPR007016 O-antigen ligase-related SD28_RS00750 b5009731ef1606b95444533ede830bd0 427 PANTHER PTHR11476:SF9 1 427 4.1E-183 T 23-04-2016 SD28_RS00750 b5009731ef1606b95444533ede830bd0 427 Gene3D G3DSA:3.30.930.10 5 185 1.4E-90 T 23-04-2016 SD28_RS00750 b5009731ef1606b95444533ede830bd0 427 Gene3D G3DSA:3.30.930.10 221 323 1.4E-90 T 23-04-2016 SD28_RS00750 b5009731ef1606b95444533ede830bd0 427 PANTHER PTHR11476 1 427 4.1E-183 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 SD28_RS00750 b5009731ef1606b95444533ede830bd0 427 Pfam PF03129 Anticodon binding domain 351 421 3.5E-8 T 23-04-2016 IPR004154 Anticodon-binding SD28_RS00750 b5009731ef1606b95444533ede830bd0 427 SUPERFAMILY SSF52954 334 421 1.8E-15 T 23-04-2016 IPR004154 Anticodon-binding SD28_RS00750 b5009731ef1606b95444533ede830bd0 427 Gene3D G3DSA:3.40.50.800 331 421 2.4E-19 T 23-04-2016 IPR004154 Anticodon-binding SD28_RS00750 b5009731ef1606b95444533ede830bd0 427 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 2 421 31.708 T 23-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 SD28_RS00750 b5009731ef1606b95444533ede830bd0 427 SUPERFAMILY SSF55681 6 319 5.18E-96 T 23-04-2016 SD28_RS00750 b5009731ef1606b95444533ede830bd0 427 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 7 408 8.9E-144 T 23-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 SD28_RS00750 b5009731ef1606b95444533ede830bd0 427 PIRSF PIRSF001549 1 422 1.5E-118 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 SD28_RS00750 b5009731ef1606b95444533ede830bd0 427 Pfam PF13393 Histidyl-tRNA synthetase 9 312 1.4E-48 T 23-04-2016 SD28_RS06870 837dd0334936324039f87453221d9a9c 346 SUPERFAMILY SSF47384 115 194 7.06E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SD28_RS06870 837dd0334936324039f87453221d9a9c 346 Gene3D G3DSA:3.30.565.10 196 345 6.1E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS06870 837dd0334936324039f87453221d9a9c 346 PRINTS PR00344 Bacterial sensor protein C-terminal signature 331 344 1.9E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 SD28_RS06870 837dd0334936324039f87453221d9a9c 346 PRINTS PR00344 Bacterial sensor protein C-terminal signature 274 288 1.9E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 SD28_RS06870 837dd0334936324039f87453221d9a9c 346 PRINTS PR00344 Bacterial sensor protein C-terminal signature 307 325 1.9E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 SD28_RS06870 837dd0334936324039f87453221d9a9c 346 PRINTS PR00344 Bacterial sensor protein C-terminal signature 292 302 1.9E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 SD28_RS06870 837dd0334936324039f87453221d9a9c 346 SMART SM00388 132 193 1.2E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SD28_RS06870 837dd0334936324039f87453221d9a9c 346 PANTHER PTHR24423 6 17 8.4E-53 T 23-04-2016 SD28_RS06870 837dd0334936324039f87453221d9a9c 346 PANTHER PTHR24423 71 346 8.4E-53 T 23-04-2016 SD28_RS06870 837dd0334936324039f87453221d9a9c 346 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 240 345 1.2E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS06870 837dd0334936324039f87453221d9a9c 346 Gene3D G3DSA:1.10.287.130 124 189 5.6E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SD28_RS06870 837dd0334936324039f87453221d9a9c 346 Pfam PF00512 His Kinase A (phospho-acceptor) domain 138 193 3.1E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SD28_RS06870 837dd0334936324039f87453221d9a9c 346 SMART SM00387 237 346 5.3E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS06870 837dd0334936324039f87453221d9a9c 346 SUPERFAMILY SSF55874 182 345 4.45E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS04840 b5fa7ca04896686fc03d56f0bc6ff0f2 91 Gene3D G3DSA:3.30.70.1460 4 91 1.7E-27 T 23-04-2016 IPR027471 YbeD-like domain SD28_RS04840 b5fa7ca04896686fc03d56f0bc6ff0f2 91 PANTHER PTHR38036:SF1 1 91 1.9E-14 T 23-04-2016 SD28_RS04840 b5fa7ca04896686fc03d56f0bc6ff0f2 91 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 3 91 18.921 T 23-04-2016 IPR007454 Uncharacterised protein family UPF0250 SD28_RS04840 b5fa7ca04896686fc03d56f0bc6ff0f2 91 SUPERFAMILY SSF117991 4 91 6.67E-24 T 23-04-2016 IPR027471 YbeD-like domain SD28_RS04840 b5fa7ca04896686fc03d56f0bc6ff0f2 91 Pfam PF04359 Protein of unknown function (DUF493) 9 91 2.5E-23 T 23-04-2016 IPR007454 Uncharacterised protein family UPF0250 SD28_RS04840 b5fa7ca04896686fc03d56f0bc6ff0f2 91 PANTHER PTHR38036 1 91 1.9E-14 T 23-04-2016 SD28_RS05005 87705b0ea206a2d2cbeab79ef962a3bb 284 Pfam PF01641 SelR domain 5 119 2.7E-40 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 SD28_RS05005 87705b0ea206a2d2cbeab79ef962a3bb 284 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 4 121 2.7E-35 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 SD28_RS05005 87705b0ea206a2d2cbeab79ef962a3bb 284 Gene3D G3DSA:3.30.1060.10 125 280 9.7E-52 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 SD28_RS05005 87705b0ea206a2d2cbeab79ef962a3bb 284 PANTHER PTHR10173 73 279 1.2E-68 T 23-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 SD28_RS05005 87705b0ea206a2d2cbeab79ef962a3bb 284 Pfam PF01625 Peptide methionine sulfoxide reductase 129 278 1.0E-51 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 SD28_RS05005 87705b0ea206a2d2cbeab79ef962a3bb 284 PANTHER PTHR10173:SF6 73 279 1.2E-68 T 23-04-2016 SD28_RS05005 87705b0ea206a2d2cbeab79ef962a3bb 284 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 126 282 29.92 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 SD28_RS05005 87705b0ea206a2d2cbeab79ef962a3bb 284 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 128 271 1.8E-44 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 SD28_RS05005 87705b0ea206a2d2cbeab79ef962a3bb 284 SUPERFAMILY SSF55068 87 280 1.7E-59 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 SD28_RS05005 87705b0ea206a2d2cbeab79ef962a3bb 284 Gene3D G3DSA:2.170.150.20 5 119 1.2E-44 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 SD28_RS05005 87705b0ea206a2d2cbeab79ef962a3bb 284 SUPERFAMILY SSF51316 5 120 1.26E-43 T 23-04-2016 IPR011057 Mss4-like SD28_RS04635 2c0e5de82f413b8af6e3e085d20c9f86 396 PANTHER PTHR23502:SF19 10 393 3.3E-45 T 23-04-2016 SD28_RS04635 2c0e5de82f413b8af6e3e085d20c9f86 396 Pfam PF07690 Major Facilitator Superfamily 17 353 1.1E-36 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS04635 2c0e5de82f413b8af6e3e085d20c9f86 396 Gene3D G3DSA:1.20.1250.20 13 190 1.7E-28 T 23-04-2016 SD28_RS04635 2c0e5de82f413b8af6e3e085d20c9f86 396 PANTHER PTHR23502 10 393 3.3E-45 T 23-04-2016 SD28_RS04635 2c0e5de82f413b8af6e3e085d20c9f86 396 SUPERFAMILY SSF103473 12 390 8.89E-46 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS00145 1e676dd372e67640af3dafb55ad6c994 284 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 2 284 25.442 T 23-04-2016 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 UniPathway: UPA00232 SD28_RS00145 1e676dd372e67640af3dafb55ad6c994 284 Pfam PF01040 UbiA prenyltransferase family 26 268 5.6E-52 T 23-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 SD28_RS00145 1e676dd372e67640af3dafb55ad6c994 284 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 64 86 - T 23-04-2016 IPR030470 UbiA prenyltransferase conserved site SD28_RS00145 1e676dd372e67640af3dafb55ad6c994 284 PANTHER PTHR11048:SF7 4 284 5.1E-73 T 23-04-2016 SD28_RS00145 1e676dd372e67640af3dafb55ad6c994 284 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 8 282 8.6E-91 T 23-04-2016 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 UniPathway: UPA00232 SD28_RS00145 1e676dd372e67640af3dafb55ad6c994 284 PANTHER PTHR11048 4 284 5.1E-73 T 23-04-2016 SD28_RS07595 b8a19a103358324201f42f42ae09e526 261 Pfam PF13489 Methyltransferase domain 46 131 8.2E-7 T 23-04-2016 SD28_RS07595 b8a19a103358324201f42f42ae09e526 261 Gene3D G3DSA:3.40.50.150 65 212 1.3E-10 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS07595 b8a19a103358324201f42f42ae09e526 261 SUPERFAMILY SSF53335 65 162 1.03E-9 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 4 801 101.02 T 23-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 7 801 0.0 T 23-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 SUPERFAMILY SSF55874 7 219 1.31E-72 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 SMART SM00433 37 794 8.5E-272 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 Pfam PF00204 DNA gyrase B 222 391 1.7E-60 T 23-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 Gene3D G3DSA:3.30.230.10 221 393 4.6E-75 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 Gene3D G3DSA:3.30.565.10 17 217 1.7E-88 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 729 790 1.8E-30 T 23-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 SUPERFAMILY SSF56719 395 561 6.8E-87 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 SUPERFAMILY SSF56719 727 794 6.8E-87 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR01159 DNA gyrase subunit B signature 182 197 1.2E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR01159 DNA gyrase subunit B signature 471 480 1.2E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR01159 DNA gyrase subunit B signature 361 375 1.2E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR01159 DNA gyrase subunit B signature 770 786 1.2E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR01159 DNA gyrase subunit B signature 7 17 1.2E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR01159 DNA gyrase subunit B signature 313 329 1.2E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR01159 DNA gyrase subunit B signature 754 766 1.2E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR01159 DNA gyrase subunit B signature 197 210 1.2E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR01159 DNA gyrase subunit B signature 221 243 1.2E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR01159 DNA gyrase subunit B signature 375 395 1.2E-73 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 SUPERFAMILY SSF54211 222 393 5.12E-60 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 Pfam PF01751 Toprim domain 420 530 7.3E-18 T 23-04-2016 IPR006171 Toprim domain SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 Gene3D G3DSA:3.40.50.670 405 551 2.0E-98 T 23-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 Gene3D G3DSA:3.40.50.670 715 783 2.0E-98 T 23-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR00418 DNA topoisomerase II family signature 421 435 2.1E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR00418 DNA topoisomerase II family signature 37 52 2.1E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR00418 DNA topoisomerase II family signature 72 85 2.1E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR00418 DNA topoisomerase II family signature 269 282 2.1E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR00418 DNA topoisomerase II family signature 526 538 2.1E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR00418 DNA topoisomerase II family signature 115 129 2.1E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR00418 DNA topoisomerase II family signature 733 749 2.1E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR00418 DNA topoisomerase II family signature 488 504 2.1E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PRINTS PR00418 DNA topoisomerase II family signature 506 523 2.1E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PANTHER PTHR10169 4 554 0.0 T 23-04-2016 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 PANTHER PTHR10169 721 801 0.0 T 23-04-2016 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 ProSitePatterns PS00177 DNA topoisomerase II signature. 423 431 - T 23-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 34 176 3.4E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS03425 d35638ac938b5564443205165cf3db5a 801 SMART SM00387 33 177 2.9E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS06685 2a6239abcb7a3568970fc726957a5d49 79 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 8 61 7.9E-10 T 23-04-2016 IPR025161 Putative transposase IS4/IS5 family SD28_RS03010 b0673c8cd020a265d6ac167c199dc317 245 Gene3D G3DSA:3.40.50.10090 32 146 1.7E-11 T 23-04-2016 SD28_RS03010 b0673c8cd020a265d6ac167c199dc317 245 Pfam PF02602 Uroporphyrinogen-III synthase HemD 13 198 2.3E-18 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS03010 b0673c8cd020a265d6ac167c199dc317 245 SUPERFAMILY SSF69618 2 234 3.53E-27 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 SD28_RS06625 80fa7bba1fb484b53290f31544b8760e 186 PANTHER PTHR23416:SF69 30 170 2.5E-32 T 23-04-2016 SD28_RS06625 80fa7bba1fb484b53290f31544b8760e 186 PANTHER PTHR23416 30 170 2.5E-32 T 23-04-2016 SD28_RS06625 80fa7bba1fb484b53290f31544b8760e 186 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 109 137 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 SD28_RS06625 80fa7bba1fb484b53290f31544b8760e 186 SUPERFAMILY SSF51161 16 176 1.37E-41 T 23-04-2016 IPR011004 Trimeric LpxA-like SD28_RS06625 80fa7bba1fb484b53290f31544b8760e 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 100 135 3.0E-9 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS06625 80fa7bba1fb484b53290f31544b8760e 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 25 57 8.3E-4 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS06625 80fa7bba1fb484b53290f31544b8760e 186 Gene3D G3DSA:2.160.10.10 18 185 8.3E-47 T 23-04-2016 SD28_RS04555 618f205eb464414a2770069b8bb6da0c 645 Gene3D G3DSA:3.30.300.30 514 640 9.2E-27 T 23-04-2016 SD28_RS04555 618f205eb464414a2770069b8bb6da0c 645 PANTHER PTHR24095:SF116 23 644 0.0 T 23-04-2016 SD28_RS04555 618f205eb464414a2770069b8bb6da0c 645 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 21 643 7.9E-285 T 23-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 SD28_RS04555 618f205eb464414a2770069b8bb6da0c 645 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 23 78 3.0E-21 T 23-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 SD28_RS04555 618f205eb464414a2770069b8bb6da0c 645 PANTHER PTHR24095 23 644 0.0 T 23-04-2016 SD28_RS04555 618f205eb464414a2770069b8bb6da0c 645 Gene3D G3DSA:2.30.38.10 435 512 9.0E-10 T 23-04-2016 SD28_RS04555 618f205eb464414a2770069b8bb6da0c 645 Gene3D G3DSA:3.40.50.980 75 262 3.3E-37 T 23-04-2016 SD28_RS04555 618f205eb464414a2770069b8bb6da0c 645 Gene3D G3DSA:3.40.50.980 263 420 2.9E-24 T 23-04-2016 SD28_RS04555 618f205eb464414a2770069b8bb6da0c 645 SUPERFAMILY SSF56801 23 640 1.31E-165 T 23-04-2016 SD28_RS04555 618f205eb464414a2770069b8bb6da0c 645 Pfam PF13193 AMP-binding enzyme C-terminal domain 527 609 3.0E-24 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain SD28_RS04555 618f205eb464414a2770069b8bb6da0c 645 Pfam PF00501 AMP-binding enzyme 81 518 8.3E-90 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 SD28_RS04555 618f205eb464414a2770069b8bb6da0c 645 ProSitePatterns PS00455 Putative AMP-binding domain signature. 257 268 - T 23-04-2016 IPR020845 AMP-binding, conserved site SD28_RS02415 4200ec2ab633fdfed1ef5374e6c70c1f 37 SUPERFAMILY SSF57840 1 37 4.58E-16 T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02415 4200ec2ab633fdfed1ef5374e6c70c1f 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02415 4200ec2ab633fdfed1ef5374e6c70c1f 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 6.9E-22 T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02415 4200ec2ab633fdfed1ef5374e6c70c1f 37 Pfam PF00444 Ribosomal protein L36 1 37 1.7E-18 T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02415 4200ec2ab633fdfed1ef5374e6c70c1f 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 16.842 T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02415 4200ec2ab633fdfed1ef5374e6c70c1f 37 PANTHER PTHR18804 1 37 1.4E-16 T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 PANTHER PTHR32282 1 939 0.0 T 23-04-2016 SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 SUPERFAMILY SSF52540 6 205 3.85E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 SUPERFAMILY SSF52540 436 570 3.85E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 Gene3D G3DSA:3.30.1490.20 201 249 8.4E-24 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 Gene3D G3DSA:3.30.1490.20 130 153 8.4E-24 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 Gene3D G3DSA:1.10.8.280 287 407 9.1E-40 T 23-04-2016 SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 PANTHER PTHR32282:SF2 1 939 0.0 T 23-04-2016 SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 SUPERFAMILY SSF52540 622 908 1.66E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 3 924 0.0 T 23-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 Gene3D G3DSA:1.20.1580.10 693 819 9.5E-53 T 23-04-2016 SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 Gene3D G3DSA:3.40.50.300 479 598 3.5E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 Gene3D G3DSA:3.40.50.300 2 89 3.5E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 Gene3D G3DSA:3.40.50.300 607 667 4.8E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 Gene3D G3DSA:3.40.50.300 820 937 4.8E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 ProSitePatterns PS00211 ABC transporters family signature. 829 843 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 939 22.052 T 23-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 Pfam PF00005 ABC transporter 805 859 4.5E-5 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 Gene3D G3DSA:1.20.1580.10 408 478 8.1E-50 T 23-04-2016 SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 Gene3D G3DSA:1.20.1580.10 252 285 8.1E-50 T 23-04-2016 SD28_RS06165 ad51262796c90603ceaafee0f54a8f48 939 Gene3D G3DSA:1.20.1580.10 91 129 8.1E-50 T 23-04-2016 SD28_RS02005 74575b6f9e00034e65a81c66365f70e7 162 Pfam PF12838 4Fe-4S dicluster domain 62 115 2.4E-11 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SD28_RS02005 74575b6f9e00034e65a81c66365f70e7 162 Gene3D G3DSA:1.10.1060.10 15 128 1.4E-21 T 23-04-2016 SD28_RS02005 74575b6f9e00034e65a81c66365f70e7 162 PANTHER PTHR10849:SF20 4 162 1.0E-78 T 23-04-2016 SD28_RS02005 74575b6f9e00034e65a81c66365f70e7 162 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 63 74 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SD28_RS02005 74575b6f9e00034e65a81c66365f70e7 162 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 102 113 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SD28_RS02005 74575b6f9e00034e65a81c66365f70e7 162 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 19 139 1.6E-44 T 23-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 SD28_RS02005 74575b6f9e00034e65a81c66365f70e7 162 SUPERFAMILY SSF54862 36 145 1.88E-24 T 23-04-2016 SD28_RS02005 74575b6f9e00034e65a81c66365f70e7 162 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 10 159 27.034 T 23-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 SD28_RS02005 74575b6f9e00034e65a81c66365f70e7 162 PANTHER PTHR10849 4 162 1.0E-78 T 23-04-2016 SD28_RS00035 05fd5ff4407b90b802b9edb622bf4619 196 SUPERFAMILY SSF53328 4 193 1.57E-51 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SD28_RS00035 05fd5ff4407b90b802b9edb622bf4619 196 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 5 192 2.9E-56 T 23-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 SD28_RS00035 05fd5ff4407b90b802b9edb622bf4619 196 Gene3D G3DSA:3.40.50.170 4 191 9.6E-56 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SD28_RS00035 05fd5ff4407b90b802b9edb622bf4619 196 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 138 161 - T 23-04-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SD28_RS00035 05fd5ff4407b90b802b9edb622bf4619 196 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 5 192 26.631 T 23-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 SD28_RS00035 05fd5ff4407b90b802b9edb622bf4619 196 PANTHER PTHR10520 3 187 8.3E-58 T 23-04-2016 SD28_RS00035 05fd5ff4407b90b802b9edb622bf4619 196 PANTHER PTHR10520:SF9 3 187 8.3E-58 T 23-04-2016 SD28_RS00035 05fd5ff4407b90b802b9edb622bf4619 196 Pfam PF00551 Formyl transferase 5 186 1.5E-51 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 Gene3D G3DSA:3.40.50.970 329 488 7.3E-34 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 Pfam PF02779 Transketolase, pyrimidine binding domain 312 472 2.4E-38 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 Gene3D G3DSA:3.40.50.970 238 328 6.3E-68 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 Gene3D G3DSA:3.40.50.970 21 197 6.3E-68 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 ProSitePatterns PS00801 Transketolase signature 1. 32 51 - T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 SUPERFAMILY SSF52922 484 615 1.27E-26 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 PANTHER PTHR11624:SF20 20 214 2.6E-284 T 23-04-2016 SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 PANTHER PTHR11624:SF20 237 615 2.6E-284 T 23-04-2016 SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 6 615 43.846 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 9 614 1.8E-258 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 PANTHER PTHR11624 20 214 2.6E-284 T 23-04-2016 IPR033247 Transketolase family SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 PANTHER PTHR11624 237 615 2.6E-284 T 23-04-2016 IPR033247 Transketolase family SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 SUPERFAMILY SSF52518 239 375 2.18E-72 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 SUPERFAMILY SSF52518 3 195 2.18E-72 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 Pfam PF02780 Transketolase, C-terminal domain 488 606 1.1E-21 T 23-04-2016 IPR033248 Transketolase, C-terminal domain SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 SUPERFAMILY SSF52518 311 496 9.42E-55 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 Gene3D G3DSA:3.40.50.920 489 614 2.2E-29 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 ProSitePatterns PS00802 Transketolase signature 2. 419 435 - T 23-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 7 278 2.6E-119 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 SD28_RS05175 671349e4131613c0bad878f1a3073b83 616 SMART SM00861 313 477 1.1E-61 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain SD28_RS02025 523dcd7911523ae810afad2f8fa6c4e5 529 Pfam PF00361 Proton-conducting membrane transporter 137 460 1.1E-67 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 SD28_RS02025 523dcd7911523ae810afad2f8fa6c4e5 529 PANTHER PTHR22773:SF40 1 208 2.5E-174 T 23-04-2016 SD28_RS02025 523dcd7911523ae810afad2f8fa6c4e5 529 PANTHER PTHR22773:SF40 227 526 2.5E-174 T 23-04-2016 SD28_RS02025 523dcd7911523ae810afad2f8fa6c4e5 529 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 8 524 4.9E-165 T 23-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 SD28_RS02025 523dcd7911523ae810afad2f8fa6c4e5 529 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 264 288 1.7E-27 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 SD28_RS02025 523dcd7911523ae810afad2f8fa6c4e5 529 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 418 444 1.7E-27 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 SD28_RS02025 523dcd7911523ae810afad2f8fa6c4e5 529 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 143 162 1.7E-27 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 SD28_RS02025 523dcd7911523ae810afad2f8fa6c4e5 529 PANTHER PTHR22773 1 208 2.5E-174 T 23-04-2016 SD28_RS02025 523dcd7911523ae810afad2f8fa6c4e5 529 PANTHER PTHR22773 227 526 2.5E-174 T 23-04-2016 SD28_RS01330 d9b360a4938eacd36b836dac23e33b90 498 SUPERFAMILY SSF50249 41 132 2.61E-18 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01330 d9b360a4938eacd36b836dac23e33b90 498 Pfam PF00575 S1 RNA binding domain 40 124 6.3E-7 T 23-04-2016 IPR003029 S1 domain GO:0003676 SD28_RS01330 d9b360a4938eacd36b836dac23e33b90 498 Pfam PF10150 Ribonuclease E/G family 130 400 5.2E-97 T 23-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 SD28_RS01330 d9b360a4938eacd36b836dac23e33b90 498 Gene3D G3DSA:2.40.50.140 32 134 6.1E-32 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS01330 d9b360a4938eacd36b836dac23e33b90 498 PANTHER PTHR30001 2 497 2.4E-177 T 23-04-2016 SD28_RS01330 d9b360a4938eacd36b836dac23e33b90 498 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 16 433 3.7E-142 T 23-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 SD28_RS01330 d9b360a4938eacd36b836dac23e33b90 498 SMART SM00316 39 128 7.7E-11 T 23-04-2016 IPR022967 RNA-binding domain, S1 SD28_RS01795 78956cef1e8462233fa4e3aba1efb72f 206 SUPERFAMILY SSF53335 1 177 2.81E-12 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS01795 78956cef1e8462233fa4e3aba1efb72f 206 Gene3D G3DSA:3.40.50.150 10 203 4.1E-19 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS01795 78956cef1e8462233fa4e3aba1efb72f 206 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 21 196 3.4E-15 T 23-04-2016 SD28_RS06630 25d57f49b68ef94e0cffd9163974c828 389 PANTHER PTHR30244:SF16 237 333 4.6E-60 T 23-04-2016 SD28_RS06630 25d57f49b68ef94e0cffd9163974c828 389 PANTHER PTHR30244:SF16 6 218 4.6E-60 T 23-04-2016 SD28_RS06630 25d57f49b68ef94e0cffd9163974c828 389 Gene3D G3DSA:3.40.640.10 4 264 5.4E-71 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS06630 25d57f49b68ef94e0cffd9163974c828 389 Gene3D G3DSA:3.90.1150.10 265 386 7.7E-37 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS06630 25d57f49b68ef94e0cffd9163974c828 389 SUPERFAMILY SSF53383 6 386 4.4E-92 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS06630 25d57f49b68ef94e0cffd9163974c828 389 PIRSF PIRSF000390 1 389 5.5E-102 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase SD28_RS06630 25d57f49b68ef94e0cffd9163974c828 389 PANTHER PTHR30244 237 333 4.6E-60 T 23-04-2016 SD28_RS06630 25d57f49b68ef94e0cffd9163974c828 389 PANTHER PTHR30244 6 218 4.6E-60 T 23-04-2016 SD28_RS06630 25d57f49b68ef94e0cffd9163974c828 389 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 366 1.3E-77 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase SD28_RS04655 b8843c9b1b3fcb18558898a56fc29c78 245 SUPERFAMILY SSF53335 83 184 1.37E-10 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS04655 b8843c9b1b3fcb18558898a56fc29c78 245 Gene3D G3DSA:3.40.50.150 84 244 2.4E-13 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS02660 759b21f137a622593ba61eec781356a8 281 PANTHER PTHR10209 14 277 2.2E-41 T 23-04-2016 SD28_RS02660 759b21f137a622593ba61eec781356a8 281 Gene3D G3DSA:2.60.120.330 13 263 3.3E-51 T 23-04-2016 IPR027443 Isopenicillin N synthase-like SD28_RS02660 759b21f137a622593ba61eec781356a8 281 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 153 254 8.4E-14 T 23-04-2016 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 SD28_RS02660 759b21f137a622593ba61eec781356a8 281 SUPERFAMILY SSF51197 11 275 1.99E-50 T 23-04-2016 SD28_RS02660 759b21f137a622593ba61eec781356a8 281 PANTHER PTHR10209:SF146 14 277 2.2E-41 T 23-04-2016 SD28_RS03735 f25cd82b567383456126c19d852ff4d6 195 Gene3D G3DSA:3.40.50.150 56 172 8.9E-5 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS03735 f25cd82b567383456126c19d852ff4d6 195 SUPERFAMILY SSF53335 56 122 9.63E-7 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS04585 f9ec1992841288056d7a1fdb18a8d1da 132 Gene3D G3DSA:3.30.428.10 7 131 1.0E-28 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 SD28_RS04585 f9ec1992841288056d7a1fdb18a8d1da 132 PIRSF PIRSF000714 1 132 1.4E-43 T 23-04-2016 IPR026026 Histidine triad hydrolase, Hint-type SD28_RS04585 f9ec1992841288056d7a1fdb18a8d1da 132 SUPERFAMILY SSF54197 7 131 2.13E-26 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 SD28_RS04585 f9ec1992841288056d7a1fdb18a8d1da 132 Pfam PF01230 HIT domain 8 96 4.1E-9 T 23-04-2016 IPR001310 Histidine triad (HIT) protein SD28_RS07005 86dd0866c1b584efc7345d854e1701a0 242 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 98 191 2.9E-9 T 23-04-2016 IPR019223 Domain of unknown function DUF2147 SD28_RS06200 d79b7f56c49c492c36a5e809d25dbb26 357 PANTHER PTHR33529 2 351 4.6E-47 T 23-04-2016 SD28_RS06200 d79b7f56c49c492c36a5e809d25dbb26 357 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 347 2.2E-79 T 23-04-2016 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 SD28_RS06200 d79b7f56c49c492c36a5e809d25dbb26 357 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 347 2.3E-54 T 23-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 SD28_RS06200 d79b7f56c49c492c36a5e809d25dbb26 357 PANTHER PTHR33529:SF2 2 351 4.6E-47 T 23-04-2016 SD28_RS05615 d47d16c92715538a79c967e4d8643830 499 Pfam PF00795 Carbon-nitrogen hydrolase 224 460 1.2E-29 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 SD28_RS05615 d47d16c92715538a79c967e4d8643830 499 SUPERFAMILY SSF56317 220 469 7.85E-39 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 SD28_RS05615 d47d16c92715538a79c967e4d8643830 499 PANTHER PTHR38686 1 496 4.7E-75 T 23-04-2016 SD28_RS05615 d47d16c92715538a79c967e4d8643830 499 Gene3D G3DSA:3.60.110.10 215 464 2.1E-28 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 SD28_RS05615 d47d16c92715538a79c967e4d8643830 499 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 4 477 19.124 T 23-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 SD28_RS05615 d47d16c92715538a79c967e4d8643830 499 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 58 439 5.3E-82 T 23-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 SD28_RS01705 f45097f030ee32fcc83fa075a02f8f17 302 SUPERFAMILY SSF69593 10 295 3.14E-24 T 23-04-2016 SD28_RS01705 f45097f030ee32fcc83fa075a02f8f17 302 Pfam PF01553 Acyltransferase 75 213 1.7E-14 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 SD28_RS01705 f45097f030ee32fcc83fa075a02f8f17 302 Gene3D G3DSA:3.40.1130.10 67 185 1.7E-5 T 23-04-2016 SD28_RS01705 f45097f030ee32fcc83fa075a02f8f17 302 SMART SM00563 89 217 8.9E-14 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 SD28_RS00940 066abdd4bee6b71984ef793265c2c008 218 PANTHER PTHR37298 4 218 8.4E-12 T 23-04-2016 SD28_RS00940 066abdd4bee6b71984ef793265c2c008 218 Gene3D G3DSA:1.10.10.10 26 62 5.7E-4 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS00940 066abdd4bee6b71984ef793265c2c008 218 Pfam PF01865 Protein of unknown function DUF47 15 214 9.8E-5 T 23-04-2016 IPR018445 Putative phosphate transport regulator SD28_RS05830 bde53c7203587816e884d83cd2061da8 462 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 281 303 5.3E-19 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 SD28_RS05830 bde53c7203587816e884d83cd2061da8 462 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 354 368 5.3E-19 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 SD28_RS05830 bde53c7203587816e884d83cd2061da8 462 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 415 428 5.3E-19 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 SD28_RS05830 bde53c7203587816e884d83cd2061da8 462 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 60 79 5.3E-19 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 SD28_RS05830 bde53c7203587816e884d83cd2061da8 462 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 339 353 5.3E-19 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 SD28_RS05830 bde53c7203587816e884d83cd2061da8 462 PANTHER PTHR30023:SF0 14 462 3.7E-68 T 23-04-2016 SD28_RS05830 bde53c7203587816e884d83cd2061da8 462 Gene3D G3DSA:3.40.710.10 23 96 2.6E-4 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like SD28_RS05830 bde53c7203587816e884d83cd2061da8 462 SUPERFAMILY SSF56601 27 461 2.11E-65 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like SD28_RS05830 bde53c7203587816e884d83cd2061da8 462 Gene3D G3DSA:3.40.710.10 233 461 8.3E-51 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like SD28_RS05830 bde53c7203587816e884d83cd2061da8 462 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 26 449 2.5E-83 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 SD28_RS05830 bde53c7203587816e884d83cd2061da8 462 PANTHER PTHR30023 14 462 3.7E-68 T 23-04-2016 SD28_RS05830 bde53c7203587816e884d83cd2061da8 462 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 48 438 1.1E-72 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 SD28_RS02225 451bc2eeab3404a6f2150d4595dd22e9 397 PANTHER PTHR30365:SF6 1 397 2.3E-108 T 23-04-2016 SD28_RS02225 451bc2eeab3404a6f2150d4595dd22e9 397 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 4 397 4.6E-100 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 SD28_RS02225 451bc2eeab3404a6f2150d4595dd22e9 397 PIRSF PIRSF000267 1 396 8.0E-122 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 SD28_RS02225 451bc2eeab3404a6f2150d4595dd22e9 397 PANTHER PTHR30365 1 397 2.3E-108 T 23-04-2016 SD28_RS02225 451bc2eeab3404a6f2150d4595dd22e9 397 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 6 377 6.7E-89 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 SD28_RS05690 ddca015430f2ca450ccd3f453023089c 248 Gene3D G3DSA:3.40.1390.30 109 215 1.5E-20 T 23-04-2016 SD28_RS05690 ddca015430f2ca450ccd3f453023089c 248 Gene3D G3DSA:3.40.1390.30 1 108 5.4E-37 T 23-04-2016 SD28_RS05690 ddca015430f2ca450ccd3f453023089c 248 SUPERFAMILY SSF102705 1 247 5.76E-75 T 23-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 SD28_RS05690 ddca015430f2ca450ccd3f453023089c 248 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 1 247 1.5E-63 T 23-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 SD28_RS05690 ddca015430f2ca450ccd3f453023089c 248 PANTHER PTHR13799 1 244 1.9E-63 T 23-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 SD28_RS05690 ddca015430f2ca450ccd3f453023089c 248 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 236 1.5E-56 T 23-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 SD28_RS02390 3f8915e09d9236dd108f159f51a6ec73 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 26.036 T 23-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02390 3f8915e09d9236dd108f159f51a6ec73 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 2.4E-40 T 23-04-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02390 3f8915e09d9236dd108f159f51a6ec73 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 4.6E-41 T 23-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02390 3f8915e09d9236dd108f159f51a6ec73 117 PANTHER PTHR12899 1 117 7.6E-45 T 23-04-2016 SD28_RS02390 3f8915e09d9236dd108f159f51a6ec73 117 Gene3D G3DSA:3.30.420.100 23 117 7.9E-37 T 23-04-2016 SD28_RS02390 3f8915e09d9236dd108f159f51a6ec73 117 SUPERFAMILY SSF53137 3 115 1.22E-52 T 23-04-2016 SD28_RS02545 2f0768229f863d17883623309dea36b5 161 PANTHER PTHR30221:SF7 11 161 6.4E-23 T 23-04-2016 SD28_RS02545 2f0768229f863d17883623309dea36b5 161 SUPERFAMILY SSF50182 98 158 1.11E-12 T 23-04-2016 IPR010920 LSM domain SD28_RS02545 2f0768229f863d17883623309dea36b5 161 Gene3D G3DSA:2.30.30.60 109 156 1.9E-12 T 23-04-2016 SD28_RS02545 2f0768229f863d17883623309dea36b5 161 Pfam PF00924 Mechanosensitive ion channel 52 156 4.7E-17 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 SD28_RS02545 2f0768229f863d17883623309dea36b5 161 PANTHER PTHR30221 11 161 6.4E-23 T 23-04-2016 SD28_RS02545 2f0768229f863d17883623309dea36b5 161 SUPERFAMILY SSF82861 10 86 7.06E-7 T 23-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 SD28_RS05810 10977f5420bb2ff8db7d571cd138254c 222 PANTHER PTHR21299 6 220 8.8E-66 T 23-04-2016 SD28_RS05810 10977f5420bb2ff8db7d571cd138254c 222 Hamap MF_00238 Cytidylate kinase [cmk]. 5 222 32.218 T 23-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 SD28_RS05810 10977f5420bb2ff8db7d571cd138254c 222 SUPERFAMILY SSF52540 4 221 1.13E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05810 10977f5420bb2ff8db7d571cd138254c 222 TIGRFAM TIGR00017 cmk: cytidylate kinase 5 218 1.2E-77 T 23-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 SD28_RS05810 10977f5420bb2ff8db7d571cd138254c 222 Gene3D G3DSA:3.40.50.300 5 220 3.9E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05810 10977f5420bb2ff8db7d571cd138254c 222 Pfam PF02224 Cytidylate kinase 7 220 8.6E-71 T 23-04-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 SD28_RS01080 6496d916d31f550ce2652985e0e3d662 179 Gene3D G3DSA:3.30.910.20 13 59 2.9E-8 T 23-04-2016 SD28_RS01080 6496d916d31f550ce2652985e0e3d662 179 Gene3D G3DSA:3.30.910.20 111 178 2.9E-8 T 23-04-2016 SD28_RS01080 6496d916d31f550ce2652985e0e3d662 179 SMART SM00935 12 179 4.4E-16 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 SD28_RS01080 6496d916d31f550ce2652985e0e3d662 179 Pfam PF03938 Outer membrane protein (OmpH-like) 11 178 2.3E-17 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 SD28_RS01080 6496d916d31f550ce2652985e0e3d662 179 SUPERFAMILY SSF111384 22 178 3.14E-16 T 23-04-2016 IPR024930 Skp domain SD28_RS05330 e71c536903305f73557878545f3e6b14 134 SUPERFAMILY SSF55811 3 131 4.74E-26 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 SD28_RS05330 e71c536903305f73557878545f3e6b14 134 TIGRFAM TIGR00586 mutt: mutator mutT protein 1 129 3.5E-30 T 23-04-2016 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 SD28_RS05330 e71c536903305f73557878545f3e6b14 134 PRINTS PR00502 NUDIX hydrolase family signature 34 48 1.7E-5 T 23-04-2016 IPR020476 NUDIX hydrolase SD28_RS05330 e71c536903305f73557878545f3e6b14 134 PRINTS PR00502 NUDIX hydrolase family signature 48 63 1.7E-5 T 23-04-2016 IPR020476 NUDIX hydrolase SD28_RS05330 e71c536903305f73557878545f3e6b14 134 PANTHER PTHR22769:SF36 1 128 6.1E-23 T 23-04-2016 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 SD28_RS05330 e71c536903305f73557878545f3e6b14 134 PANTHER PTHR22769 1 128 6.1E-23 T 23-04-2016 SD28_RS05330 e71c536903305f73557878545f3e6b14 134 Gene3D G3DSA:3.90.79.10 3 129 1.7E-25 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 SD28_RS05330 e71c536903305f73557878545f3e6b14 134 ProSitePatterns PS00893 Nudix box signature. 39 60 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 SD28_RS05330 e71c536903305f73557878545f3e6b14 134 Pfam PF00293 NUDIX domain 5 127 2.2E-16 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 SD28_RS07590 5fd37f697ccf90196c91ee39e44a83d1 217 Gene3D G3DSA:3.40.50.2020 80 215 7.6E-20 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS07590 5fd37f697ccf90196c91ee39e44a83d1 217 PANTHER PTHR11907 51 215 1.3E-31 T 23-04-2016 SD28_RS07590 5fd37f697ccf90196c91ee39e44a83d1 217 Pfam PF00156 Phosphoribosyl transferase domain 124 215 1.9E-7 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 SD28_RS07590 5fd37f697ccf90196c91ee39e44a83d1 217 SUPERFAMILY SSF53271 53 214 5.4E-21 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS07590 5fd37f697ccf90196c91ee39e44a83d1 217 PANTHER PTHR11907:SF9 51 215 1.3E-31 T 23-04-2016 SD28_RS04310 dfe703647ddfbc53dca5f635a5148128 483 PANTHER PTHR11046 237 274 6.5E-43 T 23-04-2016 SD28_RS04310 dfe703647ddfbc53dca5f635a5148128 483 PANTHER PTHR11046 6 216 6.5E-43 T 23-04-2016 SD28_RS04310 dfe703647ddfbc53dca5f635a5148128 483 Gene3D G3DSA:3.30.420.10 2 199 1.4E-56 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS04310 dfe703647ddfbc53dca5f635a5148128 483 Pfam PF00929 Exonuclease 9 193 9.5E-16 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III SD28_RS04310 dfe703647ddfbc53dca5f635a5148128 483 SMART SM00479 6 203 4.3E-6 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III SD28_RS04310 dfe703647ddfbc53dca5f635a5148128 483 PANTHER PTHR11046:SF2 237 274 6.5E-43 T 23-04-2016 IPR023607 Exodeoxyribonuclease I GO:0004529 SD28_RS04310 dfe703647ddfbc53dca5f635a5148128 483 PANTHER PTHR11046:SF2 6 216 6.5E-43 T 23-04-2016 IPR023607 Exodeoxyribonuclease I GO:0004529 SD28_RS04310 dfe703647ddfbc53dca5f635a5148128 483 Pfam PF08411 Exonuclease C-terminal 326 482 2.7E-5 T 23-04-2016 IPR013620 Exonuclease C-terminal GO:0006281|GO:0008852 SD28_RS04310 dfe703647ddfbc53dca5f635a5148128 483 SUPERFAMILY SSF53098 6 482 6.25E-71 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS01450 82fe3cc27fbc8a060e23b833cd275a77 187 Pfam PF02325 YGGT family 110 178 3.5E-15 T 23-04-2016 IPR003425 CCB3/YggT GO:0016020 SD28_RS01450 82fe3cc27fbc8a060e23b833cd275a77 187 Pfam PF02325 YGGT family 14 84 4.6E-17 T 23-04-2016 IPR003425 CCB3/YggT GO:0016020 SD28_RS01450 82fe3cc27fbc8a060e23b833cd275a77 187 PANTHER PTHR33219 1 185 3.8E-37 T 23-04-2016 SD28_RS01450 82fe3cc27fbc8a060e23b833cd275a77 187 PANTHER PTHR33219:SF5 1 185 3.8E-37 T 23-04-2016 SD28_RS06240 04b05caa1b5ef66f3295e0671a2042d5 130 TIGRFAM TIGR01354 cyt_deam_tetra: cytidine deaminase 5 128 3.6E-43 T 23-04-2016 IPR006262 Cytidine deaminase, homotetrameric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 SD28_RS06240 04b05caa1b5ef66f3295e0671a2042d5 130 Gene3D G3DSA:3.40.140.10 2 128 6.2E-46 T 23-04-2016 SD28_RS06240 04b05caa1b5ef66f3295e0671a2042d5 130 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 3 98 1.7E-15 T 23-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 SD28_RS06240 04b05caa1b5ef66f3295e0671a2042d5 130 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 95 - T 23-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 SD28_RS06240 04b05caa1b5ef66f3295e0671a2042d5 130 SUPERFAMILY SSF53927 2 126 3.35E-42 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 SD28_RS06240 04b05caa1b5ef66f3295e0671a2042d5 130 PANTHER PTHR11644 5 128 2.5E-48 T 23-04-2016 SD28_RS00625 d56812cc8676ecf2ddb771a46e6cd694 326 Gene3D G3DSA:1.20.272.20 217 324 2.7E-24 T 23-04-2016 SD28_RS00625 d56812cc8676ecf2ddb771a46e6cd694 326 PANTHER PTHR34388 1 322 5.6E-25 T 23-04-2016 SD28_RS00625 d56812cc8676ecf2ddb771a46e6cd694 326 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 19 320 3.2E-45 T 23-04-2016 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 SD28_RS00625 d56812cc8676ecf2ddb771a46e6cd694 326 SUPERFAMILY SSF48019 206 322 7.65E-24 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 SD28_RS00625 d56812cc8676ecf2ddb771a46e6cd694 326 SUPERFAMILY SSF52540 17 185 1.69E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00625 d56812cc8676ecf2ddb771a46e6cd694 326 Pfam PF06144 DNA polymerase III, delta subunit 21 184 3.8E-18 T 23-04-2016 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 SD28_RS00625 d56812cc8676ecf2ddb771a46e6cd694 326 Gene3D G3DSA:1.10.8.60 144 216 1.8E-13 T 23-04-2016 SD28_RS00625 d56812cc8676ecf2ddb771a46e6cd694 326 Gene3D G3DSA:3.40.50.300 18 134 3.1E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05485 25aa94b45a978ae99659a8dd4a5f41ca 95 PANTHER PTHR39585 8 95 1.8E-13 T 23-04-2016 SD28_RS05485 25aa94b45a978ae99659a8dd4a5f41ca 95 SUPERFAMILY SSF109910 14 81 4.18E-17 T 23-04-2016 IPR005631 Flavinator of succinate dehydrogenase SD28_RS05485 25aa94b45a978ae99659a8dd4a5f41ca 95 Pfam PF03937 Flavinator of succinate dehydrogenase 14 82 9.7E-18 T 23-04-2016 IPR005631 Flavinator of succinate dehydrogenase SD28_RS05485 25aa94b45a978ae99659a8dd4a5f41ca 95 PANTHER PTHR39585:SF1 8 95 1.8E-13 T 23-04-2016 SD28_RS05485 25aa94b45a978ae99659a8dd4a5f41ca 95 Gene3D G3DSA:1.10.150.250 12 87 4.0E-21 T 23-04-2016 IPR005631 Flavinator of succinate dehydrogenase SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 Gene3D G3DSA:3.40.710.10 46 223 6.1E-89 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 Gene3D G3DSA:3.40.710.10 275 345 6.1E-89 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 PANTHER PTHR21581:SF3 25 223 1.7E-75 T 23-04-2016 SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 PANTHER PTHR21581:SF3 261 445 1.7E-75 T 23-04-2016 SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 Gene3D G3DSA:2.60.410.10 346 441 1.6E-12 T 23-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 270 326 1.3E-10 T 23-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 52 227 5.2E-54 T 23-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 SMART SM00936 346 441 7.4E-16 T 23-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 SUPERFAMILY SSF69189 346 443 5.1E-12 T 23-04-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 PANTHER PTHR21581 25 223 1.7E-75 T 23-04-2016 SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 PANTHER PTHR21581 261 445 1.7E-75 T 23-04-2016 SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 SUPERFAMILY SSF56601 3 226 3.54E-70 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 SUPERFAMILY SSF56601 279 345 3.54E-70 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 161 174 4.9E-16 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 134 151 4.9E-16 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 81 92 4.9E-16 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 SD28_RS04845 30da48a45fe04f63f29f19fc1aec17ce 445 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 346 441 1.2E-11 T 23-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 SD28_RS00305 fb1bba58d22730edd0b0d5dc65e46bda 414 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 171 298 1.0E-29 T 23-04-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase SD28_RS00305 fb1bba58d22730edd0b0d5dc65e46bda 414 SUPERFAMILY SSF69075 312 411 3.66E-20 T 23-04-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 SD28_RS00305 fb1bba58d22730edd0b0d5dc65e46bda 414 SUPERFAMILY SSF69742 1 157 1.83E-41 T 23-04-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 SD28_RS00305 fb1bba58d22730edd0b0d5dc65e46bda 414 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 411 25.093 T 23-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 SD28_RS00305 fb1bba58d22730edd0b0d5dc65e46bda 414 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 98 121 - T 23-04-2016 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 SD28_RS00305 fb1bba58d22730edd0b0d5dc65e46bda 414 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 7 155 9.4E-44 T 23-04-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 SD28_RS00305 fb1bba58d22730edd0b0d5dc65e46bda 414 SUPERFAMILY SSF51735 162 307 1.06E-25 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS00305 fb1bba58d22730edd0b0d5dc65e46bda 414 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 410 4.1E-100 T 23-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 SD28_RS00305 fb1bba58d22730edd0b0d5dc65e46bda 414 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 313 410 4.8E-15 T 23-04-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 SD28_RS00305 fb1bba58d22730edd0b0d5dc65e46bda 414 PANTHER PTHR21089:SF3 1 352 4.0E-75 T 23-04-2016 SD28_RS00305 fb1bba58d22730edd0b0d5dc65e46bda 414 PANTHER PTHR21089 1 352 4.0E-75 T 23-04-2016 SD28_RS00305 fb1bba58d22730edd0b0d5dc65e46bda 414 PIRSF PIRSF000445 1 414 1.4E-115 T 23-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 SD28_RS00305 fb1bba58d22730edd0b0d5dc65e46bda 414 Gene3D G3DSA:3.40.50.720 163 303 2.8E-24 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06510 f2c863017fd9024f33e357381aa62c80 290 PANTHER PTHR22911 49 279 3.8E-22 T 23-04-2016 SD28_RS06510 f2c863017fd9024f33e357381aa62c80 290 SUPERFAMILY SSF103481 46 128 1.57E-11 T 23-04-2016 SD28_RS06510 f2c863017fd9024f33e357381aa62c80 290 SUPERFAMILY SSF103481 185 278 1.14E-8 T 23-04-2016 SD28_RS06510 f2c863017fd9024f33e357381aa62c80 290 Pfam PF00892 EamA-like transporter family 137 278 1.0E-8 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 SD28_RS06510 f2c863017fd9024f33e357381aa62c80 290 Pfam PF00892 EamA-like transporter family 19 124 5.0E-10 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 SD28_RS03475 56b8c71a57164d6d9dcf2c168deb1348 212 PRINTS PR00988 Uridine kinase signature 38 49 1.8E-32 T 23-04-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|UniPathway: UPA00574|UniPathway: UPA00579 SD28_RS03475 56b8c71a57164d6d9dcf2c168deb1348 212 PRINTS PR00988 Uridine kinase signature 84 99 1.8E-32 T 23-04-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|UniPathway: UPA00574|UniPathway: UPA00579 SD28_RS03475 56b8c71a57164d6d9dcf2c168deb1348 212 PRINTS PR00988 Uridine kinase signature 5 22 1.8E-32 T 23-04-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|UniPathway: UPA00574|UniPathway: UPA00579 SD28_RS03475 56b8c71a57164d6d9dcf2c168deb1348 212 PRINTS PR00988 Uridine kinase signature 142 152 1.8E-32 T 23-04-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|UniPathway: UPA00574|UniPathway: UPA00579 SD28_RS03475 56b8c71a57164d6d9dcf2c168deb1348 212 PRINTS PR00988 Uridine kinase signature 156 167 1.8E-32 T 23-04-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|UniPathway: UPA00574|UniPathway: UPA00579 SD28_RS03475 56b8c71a57164d6d9dcf2c168deb1348 212 PRINTS PR00988 Uridine kinase signature 178 191 1.8E-32 T 23-04-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|UniPathway: UPA00574|UniPathway: UPA00579 SD28_RS03475 56b8c71a57164d6d9dcf2c168deb1348 212 SUPERFAMILY SSF52540 3 203 1.31E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03475 56b8c71a57164d6d9dcf2c168deb1348 212 Gene3D G3DSA:3.40.50.300 5 211 4.8E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03475 56b8c71a57164d6d9dcf2c168deb1348 212 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 198 4.5E-41 T 23-04-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 SD28_RS03475 56b8c71a57164d6d9dcf2c168deb1348 212 PANTHER PTHR10285 2 211 5.4E-70 T 23-04-2016 SD28_RS03475 56b8c71a57164d6d9dcf2c168deb1348 212 TIGRFAM TIGR00235 udk: uridine kinase 3 212 2.9E-68 T 23-04-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|UniPathway: UPA00574|UniPathway: UPA00579 SD28_RS00455 cc48d2db423c04e367a7e6fbbc3a990b 294 Pfam PF00892 EamA-like transporter family 10 133 5.9E-15 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 SD28_RS00455 cc48d2db423c04e367a7e6fbbc3a990b 294 Pfam PF00892 EamA-like transporter family 144 281 1.2E-14 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 SD28_RS00455 cc48d2db423c04e367a7e6fbbc3a990b 294 SUPERFAMILY SSF103481 202 284 1.07E-11 T 23-04-2016 SD28_RS00455 cc48d2db423c04e367a7e6fbbc3a990b 294 SUPERFAMILY SSF103481 38 136 3.66E-11 T 23-04-2016 SD28_RS00455 cc48d2db423c04e367a7e6fbbc3a990b 294 PANTHER PTHR32322:SF9 1 282 3.9E-49 T 23-04-2016 SD28_RS00455 cc48d2db423c04e367a7e6fbbc3a990b 294 PANTHER PTHR32322 1 282 3.9E-49 T 23-04-2016 SD28_RS01260 a7a94565a8727699bad2d2651c00096d 250 Pfam PF01553 Acyltransferase 71 196 8.5E-24 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 SD28_RS01260 a7a94565a8727699bad2d2651c00096d 250 Gene3D G3DSA:3.40.1130.10 70 232 8.2E-19 T 23-04-2016 SD28_RS01260 a7a94565a8727699bad2d2651c00096d 250 PANTHER PTHR10434 8 249 7.4E-46 T 23-04-2016 SD28_RS01260 a7a94565a8727699bad2d2651c00096d 250 SMART SM00563 85 199 2.1E-26 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 SD28_RS01260 a7a94565a8727699bad2d2651c00096d 250 SUPERFAMILY SSF69593 4 249 1.7E-51 T 23-04-2016 SD28_RS06110 325aa6f2ea528360ebd488bdb6dff344 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 287 2.2E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 SD28_RS06110 325aa6f2ea528360ebd488bdb6dff344 293 SUPERFAMILY SSF161098 7 286 1.4E-49 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 SD28_RS06110 325aa6f2ea528360ebd488bdb6dff344 293 PANTHER PTHR30193 1 290 3.9E-91 T 23-04-2016 SD28_RS06110 325aa6f2ea528360ebd488bdb6dff344 293 PANTHER PTHR30193:SF5 1 290 3.9E-91 T 23-04-2016 SD28_RS06110 325aa6f2ea528360ebd488bdb6dff344 293 Gene3D G3DSA:1.10.3720.10 3 285 3.4E-47 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 SD28_RS00390 ad392912e1e17c9db8f9e18f7c6e9270 1498 SUPERFAMILY SSF53474 88 274 1.72E-15 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS00390 ad392912e1e17c9db8f9e18f7c6e9270 1498 PANTHER PTHR39431 478 621 1.1E-23 T 23-04-2016 SD28_RS00390 ad392912e1e17c9db8f9e18f7c6e9270 1498 SUPERFAMILY SSF51120 1068 1189 3.79E-7 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal SD28_RS00390 ad392912e1e17c9db8f9e18f7c6e9270 1498 SUPERFAMILY SSF51120 1213 1325 4.32E-7 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal SD28_RS00390 ad392912e1e17c9db8f9e18f7c6e9270 1498 Gene3D G3DSA:3.40.50.1820 114 276 1.5E-15 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS00390 ad392912e1e17c9db8f9e18f7c6e9270 1498 Pfam PF06594 Haemolysin-type calcium binding protein related domain 1025 1069 6.8E-5 T 23-04-2016 IPR010566 Haemolysin-type calcium binding-related SD28_RS00390 ad392912e1e17c9db8f9e18f7c6e9270 1498 PANTHER PTHR39431:SF1 478 621 1.1E-23 T 23-04-2016 SD28_RS00390 ad392912e1e17c9db8f9e18f7c6e9270 1498 Pfam PF01764 Lipase (class 3) 167 255 1.1E-7 T 23-04-2016 IPR002921 Fungal lipase-like domain GO:0006629 Reactome: REACT_14797|Reactome: REACT_604 SD28_RS00390 ad392912e1e17c9db8f9e18f7c6e9270 1498 Gene3D G3DSA:2.150.10.10 1077 1208 1.2E-8 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal SD28_RS00390 ad392912e1e17c9db8f9e18f7c6e9270 1498 Gene3D G3DSA:2.150.10.10 1218 1432 6.6E-8 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal SD28_RS04855 e2d1517374c5525865c7b8120e122d78 461 PANTHER PTHR30008:SF0 1 456 9.1E-76 T 23-04-2016 SD28_RS04855 e2d1517374c5525865c7b8120e122d78 461 Pfam PF13742 OB-fold nucleic acid binding domain 6 112 8.2E-12 T 23-04-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 SD28_RS04855 e2d1517374c5525865c7b8120e122d78 461 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 7 455 1.8E-73 T 23-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 SD28_RS04855 e2d1517374c5525865c7b8120e122d78 461 Pfam PF02601 Exonuclease VII, large subunit 138 452 1.0E-59 T 23-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 SD28_RS04855 e2d1517374c5525865c7b8120e122d78 461 PANTHER PTHR30008 1 456 9.1E-76 T 23-04-2016 SD28_RS00820 a7f2007a4261781aff85138211b90279 298 PANTHER PTHR22888 7 264 4.2E-122 T 23-04-2016 SD28_RS00820 a7f2007a4261781aff85138211b90279 298 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 145 215 8.9E-5 T 23-04-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 SD28_RS00820 a7f2007a4261781aff85138211b90279 298 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 12 234 2.6E-99 T 23-04-2016 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 SD28_RS00820 a7f2007a4261781aff85138211b90279 298 PIRSF PIRSF000292 1 298 4.3E-122 T 23-04-2016 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 SD28_RS00820 a7f2007a4261781aff85138211b90279 298 Pfam PF06481 COX Aromatic Rich Motif 239 281 1.2E-13 T 23-04-2016 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 SD28_RS00820 a7f2007a4261781aff85138211b90279 298 Gene3D G3DSA:1.10.287.90 27 108 2.7E-30 T 23-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 SD28_RS00820 a7f2007a4261781aff85138211b90279 298 Gene3D G3DSA:2.60.40.420 111 276 3.7E-38 T 23-04-2016 IPR008972 Cupredoxin SD28_RS00820 a7f2007a4261781aff85138211b90279 298 SUPERFAMILY SSF49503 115 278 1.01E-46 T 23-04-2016 IPR008972 Cupredoxin SD28_RS00820 a7f2007a4261781aff85138211b90279 298 PANTHER PTHR22888:SF13 7 264 4.2E-122 T 23-04-2016 SD28_RS00820 a7f2007a4261781aff85138211b90279 298 SUPERFAMILY SSF81464 16 112 1.36E-21 T 23-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 SD28_RS04430 2996a65c3c601c3bc036acb6953babe6 464 Pfam PF13193 AMP-binding enzyme C-terminal domain 378 451 1.8E-9 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain SD28_RS04430 2996a65c3c601c3bc036acb6953babe6 464 SUPERFAMILY SSF56801 2 463 2.22E-68 T 23-04-2016 SD28_RS04430 2996a65c3c601c3bc036acb6953babe6 464 Gene3D G3DSA:3.40.50.980 3 154 3.2E-6 T 23-04-2016 SD28_RS04430 2996a65c3c601c3bc036acb6953babe6 464 Gene3D G3DSA:3.40.50.980 155 289 2.3E-25 T 23-04-2016 SD28_RS04430 2996a65c3c601c3bc036acb6953babe6 464 Gene3D G3DSA:3.30.300.30 365 462 5.1E-22 T 23-04-2016 SD28_RS04430 2996a65c3c601c3bc036acb6953babe6 464 Pfam PF00501 AMP-binding enzyme 18 368 7.9E-26 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 SD28_RS04430 2996a65c3c601c3bc036acb6953babe6 464 PANTHER PTHR24095 149 463 3.0E-50 T 23-04-2016 SD28_RS07175 8f0760def5da3d94dc4a0152a968062b 209 PANTHER PTHR11260:SF44 2 189 2.1E-24 T 23-04-2016 SD28_RS07175 8f0760def5da3d94dc4a0152a968062b 209 SUPERFAMILY SSF52833 1 102 1.21E-17 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS07175 8f0760def5da3d94dc4a0152a968062b 209 Pfam PF00043 Glutathione S-transferase, C-terminal domain 108 185 3.6E-8 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal SD28_RS07175 8f0760def5da3d94dc4a0152a968062b 209 SUPERFAMILY SSF47616 73 191 3.27E-19 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like SD28_RS07175 8f0760def5da3d94dc4a0152a968062b 209 Gene3D G3DSA:3.40.30.10 2 94 3.3E-17 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS07175 8f0760def5da3d94dc4a0152a968062b 209 Gene3D G3DSA:1.20.1050.10 95 195 3.9E-11 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like SD28_RS07175 8f0760def5da3d94dc4a0152a968062b 209 PANTHER PTHR11260 2 189 2.1E-24 T 23-04-2016 SD28_RS07175 8f0760def5da3d94dc4a0152a968062b 209 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 77 1.4E-9 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 SD28_RS04620 64c1a4326f378c7c15dc2d5de097f645 95 SUPERFAMILY SSF47323 4 67 6.32E-6 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS04620 64c1a4326f378c7c15dc2d5de097f645 95 Gene3D G3DSA:1.10.730.10 21 64 2.4E-4 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS04220 bfc3eb456ec66937d015f16c389a5b97 394 Gene3D G3DSA:2.30.130.10 230 285 7.1E-4 T 23-04-2016 IPR015947 PUA-like domain SD28_RS04220 bfc3eb456ec66937d015f16c389a5b97 394 PANTHER PTHR30128 287 367 8.0E-17 T 23-04-2016 SD28_RS04220 bfc3eb456ec66937d015f16c389a5b97 394 SUPERFAMILY SSF56925 69 215 8.63E-13 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 SD28_RS04220 bfc3eb456ec66937d015f16c389a5b97 394 SUPERFAMILY SSF103088 274 388 6.28E-19 T 23-04-2016 IPR006665 OmpA-like domain SD28_RS04220 bfc3eb456ec66937d015f16c389a5b97 394 PRINTS PR01021 OMPA domain signature 287 309 6.9E-6 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 SD28_RS04220 bfc3eb456ec66937d015f16c389a5b97 394 PRINTS PR01021 OMPA domain signature 336 352 6.9E-6 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 SD28_RS04220 bfc3eb456ec66937d015f16c389a5b97 394 Gene3D G3DSA:3.30.1330.60 286 386 4.4E-20 T 23-04-2016 IPR006665 OmpA-like domain SD28_RS04220 bfc3eb456ec66937d015f16c389a5b97 394 Gene3D G3DSA:2.40.160.20 69 220 2.6E-5 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 SD28_RS04220 bfc3eb456ec66937d015f16c389a5b97 394 Pfam PF00691 OmpA family 287 373 4.5E-15 T 23-04-2016 IPR006665 OmpA-like domain SD28_RS06895 d122ecada883118825cb10bcf735aad4 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.0E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06895 d122ecada883118825cb10bcf735aad4 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 1.0E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06895 d122ecada883118825cb10bcf735aad4 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.0E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06895 d122ecada883118825cb10bcf735aad4 247 SUPERFAMILY SSF51735 1 243 1.52E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06895 d122ecada883118825cb10bcf735aad4 247 PANTHER PTHR24322 151 181 4.6E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06895 d122ecada883118825cb10bcf735aad4 247 PANTHER PTHR24322 11 127 4.6E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06895 d122ecada883118825cb10bcf735aad4 247 Pfam PF00106 short chain dehydrogenase 7 191 2.2E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS06895 d122ecada883118825cb10bcf735aad4 247 Gene3D G3DSA:3.40.50.720 1 214 3.5E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS04960 f10252caaadae8cec10bf2558bc87626 166 SUPERFAMILY SSF49764 35 162 2.09E-35 T 23-04-2016 IPR008978 HSP20-like chaperone SD28_RS04960 f10252caaadae8cec10bf2558bc87626 166 Pfam PF00011 Hsp20/alpha crystallin family 61 162 4.1E-23 T 23-04-2016 IPR002068 Alpha crystallin/Hsp20 domain SD28_RS04960 f10252caaadae8cec10bf2558bc87626 166 PANTHER PTHR11527:SF118 28 163 1.5E-32 T 23-04-2016 SD28_RS04960 f10252caaadae8cec10bf2558bc87626 166 Gene3D G3DSA:2.60.40.790 25 163 1.1E-37 T 23-04-2016 IPR008978 HSP20-like chaperone SD28_RS04960 f10252caaadae8cec10bf2558bc87626 166 PANTHER PTHR11527 28 163 1.5E-32 T 23-04-2016 IPR031107 Small heat shock protein HSP20 SD28_RS06405 8438e24d3dd76ed5ef31ab073fdc90a8 522 Pfam PF04488 Glycosyltransferase sugar-binding region containing DXD motif 101 135 4.3E-6 T 23-04-2016 IPR007577 Glycosyltransferase, DXD sugar-binding motif SD28_RS06405 8438e24d3dd76ed5ef31ab073fdc90a8 522 SUPERFAMILY SSF53448 19 135 1.29E-10 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS06405 8438e24d3dd76ed5ef31ab073fdc90a8 522 SUPERFAMILY SSF53448 213 368 1.29E-10 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS04315 e8d0595692439931b22dfb840c3a2508 325 PANTHER PTHR34631:SF2 16 325 1.6E-46 T 23-04-2016 SD28_RS04315 e8d0595692439931b22dfb840c3a2508 325 PANTHER PTHR34631 16 325 1.6E-46 T 23-04-2016 SD28_RS04315 e8d0595692439931b22dfb840c3a2508 325 Pfam PF13737 Transposase DDE domain 32 147 7.3E-31 T 23-04-2016 IPR025668 Transposase DDE domain SD28_RS04290 e8d0595692439931b22dfb840c3a2508 325 PANTHER PTHR34631:SF2 16 325 1.6E-46 T 23-04-2016 SD28_RS04290 e8d0595692439931b22dfb840c3a2508 325 PANTHER PTHR34631 16 325 1.6E-46 T 23-04-2016 SD28_RS04290 e8d0595692439931b22dfb840c3a2508 325 Pfam PF13737 Transposase DDE domain 32 147 7.3E-31 T 23-04-2016 IPR025668 Transposase DDE domain SD28_RS04050 04e7d411bfdd67d1677ab80657e8c799 365 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 61 114 7.6E-5 T 23-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 SD28_RS04050 04e7d411bfdd67d1677ab80657e8c799 365 Gene3D G3DSA:3.90.1170.20 23 121 2.3E-18 T 23-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 SD28_RS04050 04e7d411bfdd67d1677ab80657e8c799 365 SUPERFAMILY SSF54675 20 130 7.46E-23 T 23-04-2016 SD28_RS04050 04e7d411bfdd67d1677ab80657e8c799 365 Gene3D G3DSA:3.20.20.70 124 332 3.2E-45 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS04050 04e7d411bfdd67d1677ab80657e8c799 365 SUPERFAMILY SSF51690 128 354 3.24E-42 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 SD28_RS04050 04e7d411bfdd67d1677ab80657e8c799 365 PIRSF PIRSF000484 18 358 1.4E-52 T 23-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 SD28_RS02365 c8e2d11346a1ca2ae0c2970d0fef2c40 105 PANTHER PTHR12903 3 104 1.0E-37 T 23-04-2016 SD28_RS02365 c8e2d11346a1ca2ae0c2970d0fef2c40 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 101 1.1E-23 T 23-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02365 c8e2d11346a1ca2ae0c2970d0fef2c40 105 Gene3D G3DSA:2.30.30.30 4 92 7.4E-20 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 SD28_RS02365 c8e2d11346a1ca2ae0c2970d0fef2c40 105 SUPERFAMILY SSF50104 3 101 2.26E-30 T 23-04-2016 IPR008991 Translation protein SH3-like domain SD28_RS02365 c8e2d11346a1ca2ae0c2970d0fef2c40 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 2 102 2.2E-36 T 23-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02365 c8e2d11346a1ca2ae0c2970d0fef2c40 105 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 23-04-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02365 c8e2d11346a1ca2ae0c2970d0fef2c40 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 97 19.285 T 23-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS04570 6631dbb1601c5b04a0de0290e23de34f 72 SUPERFAMILY SSF64307 1 69 1.19E-20 T 23-04-2016 IPR001455 TusA-like domain SD28_RS04570 6631dbb1601c5b04a0de0290e23de34f 72 Pfam PF01206 Sulfurtransferase TusA 2 70 3.3E-21 T 23-04-2016 IPR001455 TusA-like domain SD28_RS04570 6631dbb1601c5b04a0de0290e23de34f 72 PANTHER PTHR33279 1 69 1.5E-15 T 23-04-2016 SD28_RS04570 6631dbb1601c5b04a0de0290e23de34f 72 Gene3D G3DSA:3.30.110.40 1 69 4.5E-23 T 23-04-2016 IPR001455 TusA-like domain SD28_RS01565 fab3945dbfb3fcc5c42c0ed21493fd17 524 PANTHER PTHR31352 40 285 6.6E-29 T 23-04-2016 SD28_RS01565 fab3945dbfb3fcc5c42c0ed21493fd17 524 ProSitePatterns PS00506 Beta-amylase active site 1. 91 99 - T 23-04-2016 IPR018238 Glycoside hydrolase, family 14, conserved site GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 SD28_RS01565 fab3945dbfb3fcc5c42c0ed21493fd17 524 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 57 75 4.9E-14 T 23-04-2016 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 SD28_RS01565 fab3945dbfb3fcc5c42c0ed21493fd17 524 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 274 290 4.9E-14 T 23-04-2016 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 SD28_RS01565 fab3945dbfb3fcc5c42c0ed21493fd17 524 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 36 50 4.9E-14 T 23-04-2016 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 SD28_RS01565 fab3945dbfb3fcc5c42c0ed21493fd17 524 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 176 198 4.9E-14 T 23-04-2016 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 SD28_RS01565 fab3945dbfb3fcc5c42c0ed21493fd17 524 ProSitePatterns PS00679 Beta-amylase active site 2. 176 186 - T 23-04-2016 IPR018238 Glycoside hydrolase, family 14, conserved site GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 SD28_RS01565 fab3945dbfb3fcc5c42c0ed21493fd17 524 SUPERFAMILY SSF51445 5 308 2.58E-51 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily SD28_RS01565 fab3945dbfb3fcc5c42c0ed21493fd17 524 Gene3D G3DSA:3.20.20.80 385 395 7.6E-61 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 SD28_RS01565 fab3945dbfb3fcc5c42c0ed21493fd17 524 Gene3D G3DSA:3.20.20.80 2 334 7.6E-61 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 SD28_RS01565 fab3945dbfb3fcc5c42c0ed21493fd17 524 PANTHER PTHR31352:SF1 40 285 6.6E-29 T 23-04-2016 SD28_RS01565 fab3945dbfb3fcc5c42c0ed21493fd17 524 Pfam PF01373 Glycosyl hydrolase family 14 5 327 2.3E-43 T 23-04-2016 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 SD28_RS03450 73d3d50f5da8b7b37b1e3412fddcd807 564 PANTHER PTHR30627 1 562 1.8E-178 T 23-04-2016 SD28_RS03450 73d3d50f5da8b7b37b1e3412fddcd807 564 SUPERFAMILY SSF56519 50 221 4.45E-42 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 SD28_RS03450 73d3d50f5da8b7b37b1e3412fddcd807 564 Gene3D G3DSA:3.40.710.10 229 553 6.4E-89 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like SD28_RS03450 73d3d50f5da8b7b37b1e3412fddcd807 564 SUPERFAMILY SSF56601 223 560 1.62E-87 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like SD28_RS03450 73d3d50f5da8b7b37b1e3412fddcd807 564 Pfam PF00905 Penicillin binding protein transpeptidase domain 247 547 5.9E-66 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 SD28_RS03450 73d3d50f5da8b7b37b1e3412fddcd807 564 Gene3D G3DSA:3.90.1310.10 128 228 2.0E-30 T 23-04-2016 SD28_RS03450 73d3d50f5da8b7b37b1e3412fddcd807 564 PANTHER PTHR30627:SF1 1 562 1.8E-178 T 23-04-2016 SD28_RS03450 73d3d50f5da8b7b37b1e3412fddcd807 564 Pfam PF03717 Penicillin-binding Protein dimerisation domain 53 205 2.4E-17 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 SD28_RS05325 a02b0b43e3462f1a9dfedf5ae30e740a 193 Gene3D G3DSA:3.30.70.1300 44 132 6.1E-18 T 23-04-2016 SD28_RS05325 a02b0b43e3462f1a9dfedf5ae30e740a 193 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 3 193 26.629 T 23-04-2016 IPR003774 Protein of unknown function UPF0301 SD28_RS05325 a02b0b43e3462f1a9dfedf5ae30e740a 193 PANTHER PTHR30327 1 183 3.8E-41 T 23-04-2016 SD28_RS05325 a02b0b43e3462f1a9dfedf5ae30e740a 193 SUPERFAMILY SSF143456 2 185 2.75E-47 T 23-04-2016 SD28_RS05325 a02b0b43e3462f1a9dfedf5ae30e740a 193 Pfam PF02622 Uncharacterized ACR, COG1678 19 177 2.1E-38 T 23-04-2016 IPR003774 Protein of unknown function UPF0301 SD28_RS05325 a02b0b43e3462f1a9dfedf5ae30e740a 193 Gene3D G3DSA:3.40.1740.10 3 43 8.1E-24 T 23-04-2016 SD28_RS05325 a02b0b43e3462f1a9dfedf5ae30e740a 193 Gene3D G3DSA:3.40.1740.10 133 180 8.1E-24 T 23-04-2016 SD28_RS05325 a02b0b43e3462f1a9dfedf5ae30e740a 193 PANTHER PTHR30327:SF1 1 183 3.8E-41 T 23-04-2016 SD28_RS03780 e61c557f42129695f9522027f166abd2 90 Gene3D G3DSA:4.10.520.10 1 90 1.0E-36 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 SD28_RS03780 e61c557f42129695f9522027f166abd2 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.8E-20 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 SD28_RS03780 e61c557f42129695f9522027f166abd2 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.8E-20 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 SD28_RS03780 e61c557f42129695f9522027f166abd2 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.8E-20 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 SD28_RS03780 e61c557f42129695f9522027f166abd2 90 SMART SM00411 1 90 4.2E-41 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 SD28_RS03780 e61c557f42129695f9522027f166abd2 90 PANTHER PTHR33175 1 90 2.1E-41 T 23-04-2016 SD28_RS03780 e61c557f42129695f9522027f166abd2 90 SUPERFAMILY SSF47729 1 90 1.38E-31 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 SD28_RS03780 e61c557f42129695f9522027f166abd2 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 7.8E-33 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 SD28_RS03780 e61c557f42129695f9522027f166abd2 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 23-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 SD28_RS07035 4f5dff68d0267cd4c059f18a35938f3a 275 PANTHER PTHR24032 1 264 5.0E-87 T 23-04-2016 SD28_RS07035 4f5dff68d0267cd4c059f18a35938f3a 275 PIRSF PIRSF000903 1 274 7.5E-89 T 23-04-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 SD28_RS07035 4f5dff68d0267cd4c059f18a35938f3a 275 Gene3D G3DSA:3.60.21.10 168 268 3.7E-48 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like SD28_RS07035 4f5dff68d0267cd4c059f18a35938f3a 275 Gene3D G3DSA:3.60.21.10 1 130 3.7E-48 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like SD28_RS07035 4f5dff68d0267cd4c059f18a35938f3a 275 PANTHER PTHR24032:SF27 1 264 5.0E-87 T 23-04-2016 SD28_RS07035 4f5dff68d0267cd4c059f18a35938f3a 275 Pfam PF00149 Calcineurin-like phosphoesterase 3 147 2.2E-13 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 SD28_RS07035 4f5dff68d0267cd4c059f18a35938f3a 275 SUPERFAMILY SSF56300 1 258 2.13E-50 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like SD28_RS07035 4f5dff68d0267cd4c059f18a35938f3a 275 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 270 1.6E-70 T 23-04-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 SD28_RS06395 ae22a3eaba21e767930a8a6245a25193 420 PANTHER PTHR30489:SF8 1 420 8.8E-108 T 23-04-2016 SD28_RS06395 ae22a3eaba21e767930a8a6245a25193 420 Pfam PF12704 MacB-like periplasmic core domain 27 217 8.1E-18 T 23-04-2016 IPR025857 MacB-like periplasmic core domain SD28_RS06395 ae22a3eaba21e767930a8a6245a25193 420 Pfam PF02687 FtsX-like permease family 280 413 2.9E-18 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 SD28_RS06395 ae22a3eaba21e767930a8a6245a25193 420 PANTHER PTHR30489 1 420 8.8E-108 T 23-04-2016 SD28_RS06395 ae22a3eaba21e767930a8a6245a25193 420 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 5 420 8.3E-146 T 23-04-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 SD28_RS04550 979281da0b66b125f2df8f75310881dd 287 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 3 264 1.0E-101 T 23-04-2016 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 SD28_RS04550 979281da0b66b125f2df8f75310881dd 287 Gene3D G3DSA:3.90.550.10 3 279 4.4E-64 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS04550 979281da0b66b125f2df8f75310881dd 287 Pfam PF00483 Nucleotidyl transferase 10 266 2.1E-31 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 SD28_RS04550 979281da0b66b125f2df8f75310881dd 287 PANTHER PTHR22572:SF14 5 283 1.2E-95 T 23-04-2016 SD28_RS04550 979281da0b66b125f2df8f75310881dd 287 SUPERFAMILY SSF53448 1 279 2.14E-61 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS04550 979281da0b66b125f2df8f75310881dd 287 PANTHER PTHR22572 5 283 1.2E-95 T 23-04-2016 SD28_RS04360 820d172eb9d4a09df83fcac061a56bf1 184 Pfam PF00227 Proteasome subunit 5 176 4.5E-24 T 23-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 SD28_RS04360 820d172eb9d4a09df83fcac061a56bf1 184 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 7 178 9.5E-77 T 23-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 SD28_RS04360 820d172eb9d4a09df83fcac061a56bf1 184 SUPERFAMILY SSF56235 3 178 1.69E-53 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal SD28_RS04360 820d172eb9d4a09df83fcac061a56bf1 184 PANTHER PTHR32194 4 183 3.2E-101 T 23-04-2016 SD28_RS04360 820d172eb9d4a09df83fcac061a56bf1 184 Gene3D G3DSA:3.60.20.10 7 179 2.8E-77 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal SD28_RS04360 820d172eb9d4a09df83fcac061a56bf1 184 PIRSF PIRSF039093 1 181 1.4E-84 T 23-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 SD28_RS01790 327807a61f0c14e6c59c7d49259dd963 439 ProSitePatterns PS01276 Peptidase family U32 signature. 163 181 - T 23-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- SD28_RS01790 327807a61f0c14e6c59c7d49259dd963 439 PANTHER PTHR30217:SF6 1 207 3.2E-190 T 23-04-2016 SD28_RS01790 327807a61f0c14e6c59c7d49259dd963 439 PANTHER PTHR30217:SF6 240 430 3.2E-190 T 23-04-2016 SD28_RS01790 327807a61f0c14e6c59c7d49259dd963 439 Pfam PF16325 Peptidase family U32 C-terminal domain 353 428 3.3E-16 T 23-04-2016 IPR032525 Peptidase family U32, C-terminal KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- SD28_RS01790 327807a61f0c14e6c59c7d49259dd963 439 PANTHER PTHR30217 1 207 3.2E-190 T 23-04-2016 SD28_RS01790 327807a61f0c14e6c59c7d49259dd963 439 PANTHER PTHR30217 240 430 3.2E-190 T 23-04-2016 SD28_RS01790 327807a61f0c14e6c59c7d49259dd963 439 Pfam PF01136 Peptidase family U32 77 336 1.1E-95 T 23-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- SD28_RS00955 311a2ed4c272d49e0689084980f003c1 206 Pfam PF02682 Allophanate hydrolase subunit 1 1 192 5.3E-38 T 23-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D SD28_RS00955 311a2ed4c272d49e0689084980f003c1 206 SMART SM00796 1 200 9.4E-22 T 23-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D SD28_RS00955 311a2ed4c272d49e0689084980f003c1 206 SUPERFAMILY SSF50891 93 205 1.18E-24 T 23-04-2016 IPR029000 Cyclophilin-like domain SD28_RS00955 311a2ed4c272d49e0689084980f003c1 206 PANTHER PTHR34698 1 192 1.0E-37 T 23-04-2016 SD28_RS00955 311a2ed4c272d49e0689084980f003c1 206 PANTHER PTHR34698:SF2 1 192 1.0E-37 T 23-04-2016 SD28_RS00955 311a2ed4c272d49e0689084980f003c1 206 Gene3D G3DSA:2.40.100.10 93 189 1.8E-25 T 23-04-2016 IPR029000 Cyclophilin-like domain SD28_RS02750 927adc88783344149935905db4000ab2 368 PIRSF PIRSF000148 3 368 3.3E-73 T 23-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 SD28_RS02750 927adc88783344149935905db4000ab2 368 SUPERFAMILY SSF55347 135 351 4.37E-65 T 23-04-2016 SD28_RS02750 927adc88783344149935905db4000ab2 368 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 148 350 6.5E-46 T 23-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 SD28_RS02750 927adc88783344149935905db4000ab2 368 PANTHER PTHR10174:SF116 104 180 7.3E-96 T 23-04-2016 SD28_RS02750 927adc88783344149935905db4000ab2 368 PANTHER PTHR10174:SF116 198 362 7.3E-96 T 23-04-2016 SD28_RS02750 927adc88783344149935905db4000ab2 368 SMART SM00859 5 123 1.2E-17 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 SD28_RS02750 927adc88783344149935905db4000ab2 368 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 123 1.7E-20 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 SD28_RS02750 927adc88783344149935905db4000ab2 368 SUPERFAMILY SSF51735 6 148 1.05E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS02750 927adc88783344149935905db4000ab2 368 Gene3D G3DSA:3.30.360.10 144 347 1.8E-65 T 23-04-2016 SD28_RS02750 927adc88783344149935905db4000ab2 368 Gene3D G3DSA:3.40.50.720 5 143 1.9E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS02750 927adc88783344149935905db4000ab2 368 PANTHER PTHR10174 104 180 7.3E-96 T 23-04-2016 SD28_RS02750 927adc88783344149935905db4000ab2 368 PANTHER PTHR10174 198 362 7.3E-96 T 23-04-2016 SD28_RS02750 927adc88783344149935905db4000ab2 368 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 4 363 2.5E-147 T 23-04-2016 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 SD28_RS03870 8f81f4ea651f53ba3dd44cef3c0081eb 322 Gene3D G3DSA:3.40.50.10490 6 193 2.2E-51 T 23-04-2016 SD28_RS03870 8f81f4ea651f53ba3dd44cef3c0081eb 322 SMART SM00116 209 256 1.2E-5 T 23-04-2016 IPR000644 CBS domain SD28_RS03870 8f81f4ea651f53ba3dd44cef3c0081eb 322 SMART SM00116 273 321 2.5 T 23-04-2016 IPR000644 CBS domain SD28_RS03870 8f81f4ea651f53ba3dd44cef3c0081eb 322 Gene3D G3DSA:3.10.580.10 194 318 4.1E-39 T 23-04-2016 SD28_RS03870 8f81f4ea651f53ba3dd44cef3c0081eb 322 SUPERFAMILY SSF53697 5 318 7.12E-66 T 23-04-2016 SD28_RS03870 8f81f4ea651f53ba3dd44cef3c0081eb 322 Pfam PF01380 SIS domain 39 171 6.5E-29 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 SD28_RS03870 8f81f4ea651f53ba3dd44cef3c0081eb 322 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 44 312 1.7E-107 T 23-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 SD28_RS03870 8f81f4ea651f53ba3dd44cef3c0081eb 322 PANTHER PTHR11911 86 314 5.9E-45 T 23-04-2016 SD28_RS03870 8f81f4ea651f53ba3dd44cef3c0081eb 322 PANTHER PTHR11911:SF62 86 314 5.9E-45 T 23-04-2016 SD28_RS03870 8f81f4ea651f53ba3dd44cef3c0081eb 322 Pfam PF00571 CBS domain 200 253 4.3E-9 T 23-04-2016 IPR000644 CBS domain SD28_RS03870 8f81f4ea651f53ba3dd44cef3c0081eb 322 Pfam PF00571 CBS domain 268 319 7.1E-8 T 23-04-2016 IPR000644 CBS domain SD28_RS03870 8f81f4ea651f53ba3dd44cef3c0081eb 322 PIRSF PIRSF004692 1 322 5.7E-131 T 23-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 SD28_RS06840 289d77ff7ae288d9640998a0b365e705 165 Gene3D G3DSA:3.10.129.10 15 142 8.6E-30 T 23-04-2016 IPR029069 HotDog domain SD28_RS06840 289d77ff7ae288d9640998a0b365e705 165 SUPERFAMILY SSF54637 13 134 1.14E-25 T 23-04-2016 IPR029069 HotDog domain SD28_RS06840 289d77ff7ae288d9640998a0b365e705 165 PANTHER PTHR12418 48 151 2.0E-15 T 23-04-2016 SD28_RS06840 289d77ff7ae288d9640998a0b365e705 165 Pfam PF03061 Thioesterase superfamily 55 129 1.4E-9 T 23-04-2016 IPR006683 Thioesterase domain SD28_RS04475 3cfeed5000418eefb3af82dfcbc4c05c 498 Pfam PF00171 Aldehyde dehydrogenase family 18 477 7.7E-139 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 SD28_RS04475 3cfeed5000418eefb3af82dfcbc4c05c 498 Gene3D G3DSA:3.40.309.10 268 443 1.3E-56 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 SD28_RS04475 3cfeed5000418eefb3af82dfcbc4c05c 498 PANTHER PTHR11699:SF144 21 495 2.6E-279 T 23-04-2016 SD28_RS04475 3cfeed5000418eefb3af82dfcbc4c05c 498 PANTHER PTHR11699 21 495 2.6E-279 T 23-04-2016 SD28_RS04475 3cfeed5000418eefb3af82dfcbc4c05c 498 Gene3D G3DSA:3.40.605.10 15 267 4.3E-75 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 SD28_RS04475 3cfeed5000418eefb3af82dfcbc4c05c 498 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 252 259 - T 23-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 SD28_RS04475 3cfeed5000418eefb3af82dfcbc4c05c 498 SUPERFAMILY SSF53720 13 482 4.58E-137 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 SD28_RS01770 ea9ce29c9c8aaf916b597b9396359cef 473 PANTHER PTHR10283:SF91 6 472 2.1E-134 T 23-04-2016 SD28_RS01770 ea9ce29c9c8aaf916b597b9396359cef 473 PANTHER PTHR10283 6 472 2.1E-134 T 23-04-2016 SD28_RS01770 ea9ce29c9c8aaf916b597b9396359cef 473 Pfam PF03600 Citrate transporter 50 421 1.3E-53 T 23-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 SD28_RS06305 316e605227b9e93965db2f156161b1e0 56 SUPERFAMILY SSF57802 2 55 3.2E-23 T 23-04-2016 SD28_RS06305 316e605227b9e93965db2f156161b1e0 56 ProSitePatterns PS00202 Rubredoxin signature. 35 45 - T 23-04-2016 IPR018527 Rubredoxin, iron-binding site GO:0046872 SD28_RS06305 316e605227b9e93965db2f156161b1e0 56 PRINTS PR00163 Rubredoxin signature 5 21 2.0E-10 T 23-04-2016 IPR024935 Rubredoxin domain GO:0005506 SD28_RS06305 316e605227b9e93965db2f156161b1e0 56 PRINTS PR00163 Rubredoxin signature 35 51 2.0E-10 T 23-04-2016 IPR024935 Rubredoxin domain GO:0005506 SD28_RS06305 316e605227b9e93965db2f156161b1e0 56 Pfam PF00301 Rubredoxin 5 51 3.5E-24 T 23-04-2016 IPR024935 Rubredoxin domain GO:0005506 SD28_RS06305 316e605227b9e93965db2f156161b1e0 56 Gene3D G3DSA:2.20.28.10 2 55 1.9E-26 T 23-04-2016 IPR004039 Rubredoxin-type fold SD28_RS06305 316e605227b9e93965db2f156161b1e0 56 PIRSF PIRSF000071 1 56 5.2E-25 T 23-04-2016 IPR024922 Rubredoxin GO:0005506|GO:0009055 SD28_RS07390 bf8b1005a8a520174b4580efa44f9578 346 Pfam PF03318 Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2 208 337 1.4E-5 T 23-04-2016 IPR004991 Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2 SD28_RS07390 bf8b1005a8a520174b4580efa44f9578 346 SUPERFAMILY SSF56973 301 322 1.1E-7 T 23-04-2016 SD28_RS07390 bf8b1005a8a520174b4580efa44f9578 346 SUPERFAMILY SSF56973 63 273 1.1E-7 T 23-04-2016 SD28_RS07390 bf8b1005a8a520174b4580efa44f9578 346 Gene3D G3DSA:2.170.15.10 199 241 2.9E-4 T 23-04-2016 IPR023307 Aerolysin-like toxin, beta complex domain SD28_RS07185 484129e52d8aa1d37518ec37f6ebbe7d 78 Gene3D G3DSA:1.10.3880.10 3 77 4.5E-30 T 23-04-2016 SD28_RS07185 484129e52d8aa1d37518ec37f6ebbe7d 78 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 78 20.629 T 23-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 SD28_RS07185 484129e52d8aa1d37518ec37f6ebbe7d 78 PIRSF PIRSF029827 1 78 6.3E-30 T 23-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 SD28_RS07185 484129e52d8aa1d37518ec37f6ebbe7d 78 PANTHER PTHR36965:SF1 1 78 2.0E-29 T 23-04-2016 SD28_RS07185 484129e52d8aa1d37518ec37f6ebbe7d 78 SUPERFAMILY SSF111148 3 77 1.05E-29 T 23-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 SD28_RS07185 484129e52d8aa1d37518ec37f6ebbe7d 78 PANTHER PTHR36965 1 78 2.0E-29 T 23-04-2016 SD28_RS07185 484129e52d8aa1d37518ec37f6ebbe7d 78 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 4 75 3.0E-30 T 23-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 SD28_RS07185 484129e52d8aa1d37518ec37f6ebbe7d 78 Pfam PF04362 Bacterial Fe(2+) trafficking 3 77 2.1E-31 T 23-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 SD28_RS02105 d8f53f9840005b023ef6b0bce8813ca5 144 Pfam PF04364 DNA polymerase III chi subunit, HolC 2 139 1.3E-19 T 23-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 SD28_RS02105 d8f53f9840005b023ef6b0bce8813ca5 144 SUPERFAMILY SSF102400 1 143 3.01E-22 T 23-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 SD28_RS02105 d8f53f9840005b023ef6b0bce8813ca5 144 Gene3D G3DSA:3.40.50.10110 1 143 3.9E-19 T 23-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 SD28_RS02375 c7a50b7fb785c3ec2018ebdbe227cbd4 101 PANTHER PTHR19836 1 101 1.7E-57 T 23-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02375 c7a50b7fb785c3ec2018ebdbe227cbd4 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 62 85 - T 23-04-2016 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 SD28_RS02375 c7a50b7fb785c3ec2018ebdbe227cbd4 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.692 T 23-04-2016 IPR023036 Ribosomal protein S14, bacterial/plastid SD28_RS02375 c7a50b7fb785c3ec2018ebdbe227cbd4 101 Gene3D G3DSA:4.10.830.10 41 101 3.7E-29 T 23-04-2016 SD28_RS02375 c7a50b7fb785c3ec2018ebdbe227cbd4 101 SUPERFAMILY SSF57716 2 101 2.92E-37 T 23-04-2016 SD28_RS02375 c7a50b7fb785c3ec2018ebdbe227cbd4 101 Pfam PF00253 Ribosomal protein S14p/S29e 48 100 1.8E-24 T 23-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05430 cfbfbe6599bcefd1bb1c5aab2c2f6869 157 PRINTS PR01011 Glutathione peroxidase family signature 119 128 3.1E-8 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 SD28_RS05430 cfbfbe6599bcefd1bb1c5aab2c2f6869 157 PRINTS PR01011 Glutathione peroxidase family signature 20 37 3.1E-8 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 SD28_RS05430 cfbfbe6599bcefd1bb1c5aab2c2f6869 157 Pfam PF00255 Glutathione peroxidase 4 107 2.5E-35 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 SD28_RS05430 cfbfbe6599bcefd1bb1c5aab2c2f6869 157 SUPERFAMILY SSF52833 3 155 1.99E-47 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS05430 cfbfbe6599bcefd1bb1c5aab2c2f6869 157 PIRSF PIRSF000303 1 157 3.7E-57 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 SD28_RS05430 cfbfbe6599bcefd1bb1c5aab2c2f6869 157 Gene3D G3DSA:3.40.30.10 3 156 1.5E-59 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS05430 cfbfbe6599bcefd1bb1c5aab2c2f6869 157 PANTHER PTHR11592 1 157 4.3E-67 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 SD28_RS05430 cfbfbe6599bcefd1bb1c5aab2c2f6869 157 ProSitePatterns PS00460 Glutathione peroxidases active site. 22 37 - T 23-04-2016 IPR029759 Glutathione peroxidase active site SD28_RS05725 8c1f5ed30102569d3ee5bad29ec099b9 338 PIRSF PIRSF001439 25 325 2.5E-56 T 23-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin SD28_RS05725 8c1f5ed30102569d3ee5bad29ec099b9 338 SUPERFAMILY SSF51735 1 337 8.2E-94 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05725 8c1f5ed30102569d3ee5bad29ec099b9 338 PANTHER PTHR13812 50 327 7.6E-63 T 23-04-2016 SD28_RS05725 8c1f5ed30102569d3ee5bad29ec099b9 338 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 20 314 2.8E-94 T 23-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin SD28_RS05725 8c1f5ed30102569d3ee5bad29ec099b9 338 Gene3D G3DSA:3.40.50.720 139 297 4.2E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05725 8c1f5ed30102569d3ee5bad29ec099b9 338 Gene3D G3DSA:3.30.1780.10 1 138 1.3E-39 T 23-04-2016 IPR023401 Ornithine cyclodeaminase, N-terminal SD28_RS05725 8c1f5ed30102569d3ee5bad29ec099b9 338 PANTHER PTHR13812:SF19 50 327 7.6E-63 T 23-04-2016 SD28_RS00270 827b94b55658420c23a92c81767c7e9a 115 Pfam PF13359 DDE superfamily endonuclease 8 100 7.0E-13 T 23-04-2016 IPR027806 Harbinger transposase-derived nuclease domain SD28_RS05940 5295bf0aa8e62de6af28eebccb57f2a8 115 Gene3D G3DSA:3.30.429.10 1 112 1.2E-15 T 23-04-2016 SD28_RS05940 5295bf0aa8e62de6af28eebccb57f2a8 115 SUPERFAMILY SSF55331 2 113 7.32E-16 T 23-04-2016 IPR014347 Tautomerase/MIF superfamily SD28_RS04150 b13198a214103c2d620b6bb12e1ce933 221 Pfam PF12710 haloacid dehalogenase-like hydrolase 8 180 5.2E-13 T 23-04-2016 SD28_RS04150 b13198a214103c2d620b6bb12e1ce933 221 Gene3D G3DSA:1.10.150.210 38 82 1.2E-9 T 23-04-2016 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|UniPathway: UPA00135 SD28_RS04150 b13198a214103c2d620b6bb12e1ce933 221 PANTHER PTHR10000:SF7 8 221 4.8E-23 T 23-04-2016 SD28_RS04150 b13198a214103c2d620b6bb12e1ce933 221 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 8 180 7.2E-19 T 23-04-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 SD28_RS04150 b13198a214103c2d620b6bb12e1ce933 221 PANTHER PTHR10000 8 221 4.8E-23 T 23-04-2016 SD28_RS04150 b13198a214103c2d620b6bb12e1ce933 221 SUPERFAMILY SSF56784 4 219 1.6E-30 T 23-04-2016 IPR023214 HAD-like domain SD28_RS04150 b13198a214103c2d620b6bb12e1ce933 221 Gene3D G3DSA:3.40.50.1000 5 23 6.5E-17 T 23-04-2016 IPR023214 HAD-like domain SD28_RS04150 b13198a214103c2d620b6bb12e1ce933 221 Gene3D G3DSA:3.40.50.1000 83 219 6.5E-17 T 23-04-2016 IPR023214 HAD-like domain SD28_RS01280 35b1387e51b6ae16365d86ba3277662e 426 SUPERFAMILY SSF103473 9 420 4.19E-60 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS01280 35b1387e51b6ae16365d86ba3277662e 426 Pfam PF07690 Major Facilitator Superfamily 251 415 1.3E-10 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS01280 35b1387e51b6ae16365d86ba3277662e 426 Pfam PF00083 Sugar (and other) transporter 15 230 6.4E-23 T 23-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 SD28_RS01280 35b1387e51b6ae16365d86ba3277662e 426 PANTHER PTHR23508 9 421 3.8E-107 T 23-04-2016 SD28_RS01280 35b1387e51b6ae16365d86ba3277662e 426 Gene3D G3DSA:1.20.1250.20 10 219 4.9E-24 T 23-04-2016 SD28_RS01280 35b1387e51b6ae16365d86ba3277662e 426 Gene3D G3DSA:1.20.1250.20 238 420 4.1E-19 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 337 447 7.0E-28 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PIRSF PIRSF000350 1 460 5.9E-64 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 317 2.4E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 Gene3D G3DSA:3.50.50.60 4 130 3.1E-30 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 167 192 1.0E-49 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 398 413 1.0E-49 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 304 1.0E-49 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 333 354 1.0E-49 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.0E-49 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 253 267 1.0E-49 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 130 139 1.0E-49 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 1.0E-49 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 1.0E-49 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 Gene3D G3DSA:3.50.50.60 131 325 4.6E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 SUPERFAMILY SSF51905 3 55 5.87E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 SUPERFAMILY SSF51905 214 356 5.87E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 SUPERFAMILY SSF51905 91 184 5.87E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 SUPERFAMILY SSF55424 336 456 6.19E-30 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PANTHER PTHR22912 2 452 2.7E-198 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 Gene3D G3DSA:3.30.390.30 336 449 2.5E-31 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PANTHER PTHR22912:SF93 2 452 2.7E-198 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.0E-30 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 127 145 1.0E-30 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 167 185 1.0E-30 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 1.0E-30 T 23-04-2016 SD28_RS06320 cc62de153a7382680e1715677aa41a9c 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 252 268 1.0E-30 T 23-04-2016 SD28_RS04510 b7bdc6bf5fe8e683afdd6350c89dfcfe 187 Gene3D G3DSA:1.10.60.30 113 185 1.1E-25 T 23-04-2016 IPR023153 PSPTO4464-like domain SD28_RS04510 b7bdc6bf5fe8e683afdd6350c89dfcfe 187 PANTHER PTHR38101:SF1 2 182 1.3E-42 T 23-04-2016 SD28_RS04510 b7bdc6bf5fe8e683afdd6350c89dfcfe 187 Gene3D G3DSA:1.10.60.30 35 110 8.4E-23 T 23-04-2016 IPR023153 PSPTO4464-like domain SD28_RS04510 b7bdc6bf5fe8e683afdd6350c89dfcfe 187 PANTHER PTHR38101 2 182 1.3E-42 T 23-04-2016 SD28_RS04510 b7bdc6bf5fe8e683afdd6350c89dfcfe 187 Pfam PF04751 Protein of unknown function (DUF615) 26 180 7.4E-44 T 23-04-2016 IPR006839 Ribosome-associated, YjgA SD28_RS04510 b7bdc6bf5fe8e683afdd6350c89dfcfe 187 PIRSF PIRSF016183 8 187 1.4E-55 T 23-04-2016 IPR006839 Ribosome-associated, YjgA SD28_RS04510 b7bdc6bf5fe8e683afdd6350c89dfcfe 187 SUPERFAMILY SSF158710 35 183 3.14E-42 T 23-04-2016 SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 SUPERFAMILY SSF68912 1 45 1.37E-9 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 416 1.4E-202 T 23-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 Gene3D G3DSA:1.10.720.10 1 46 6.8E-16 T 23-04-2016 SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 Gene3D G3DSA:3.40.50.300 131 416 2.8E-104 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 PANTHER PTHR15184:SF34 1 50 1.7E-181 T 23-04-2016 SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 PANTHER PTHR15184:SF34 101 402 1.7E-181 T 23-04-2016 SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 SMART SM00382 169 355 3.9E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 SMART SM00357 51 117 3.1E-13 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 159 362 2.3E-24 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 SUPERFAMILY SSF52540 89 370 4.95E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 418 231.895 T 23-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 SUPERFAMILY SSF50249 47 124 2.4E-25 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 Pfam PF07497 Rho termination factor, RNA-binding domain 51 124 4.4E-29 T 23-04-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 PANTHER PTHR15184 1 50 1.7E-181 T 23-04-2016 SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 PANTHER PTHR15184 101 402 1.7E-181 T 23-04-2016 SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 Pfam PF07498 Rho termination factor, N-terminal domain 5 46 5.7E-13 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 Gene3D G3DSA:2.40.50.140 48 115 3.1E-31 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS07480 dffb15800ccec8b5522cc5289a8e291a 420 SMART SM00959 5 46 4.1E-12 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 SD28_RS01700 329faa1aaf22d9c6813b14409cc329b2 363 PANTHER PTHR30344:SF1 25 363 3.2E-54 T 23-04-2016 SD28_RS01700 329faa1aaf22d9c6813b14409cc329b2 363 PANTHER PTHR30344 25 363 3.2E-54 T 23-04-2016 SD28_RS01700 329faa1aaf22d9c6813b14409cc329b2 363 Gene3D G3DSA:2.130.10.10 25 357 2.0E-60 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 SD28_RS01700 329faa1aaf22d9c6813b14409cc329b2 363 Pfam PF10282 Lactonase, 7-bladed beta-propeller 25 357 5.1E-68 T 23-04-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 SD28_RS01700 329faa1aaf22d9c6813b14409cc329b2 363 SUPERFAMILY SSF75011 51 355 2.88E-28 T 23-04-2016 SD28_RS03845 431d8eeccb8e4d3d4633540851386c88 129 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 128 2.6E-60 T 23-04-2016 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 SD28_RS03845 431d8eeccb8e4d3d4633540851386c88 129 PANTHER PTHR10374 1 125 6.0E-53 T 23-04-2016 SD28_RS03845 431d8eeccb8e4d3d4633540851386c88 129 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 4.3E-24 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain SD28_RS03845 431d8eeccb8e4d3d4633540851386c88 129 SUPERFAMILY SSF54593 1 127 9.67E-35 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase SD28_RS03845 431d8eeccb8e4d3d4633540851386c88 129 Gene3D G3DSA:3.10.180.10 1 128 6.7E-45 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase SD28_RS03845 431d8eeccb8e4d3d4633540851386c88 129 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 23-04-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 SD28_RS01715 2f0cf41a96f1268cf6bff54ef34b22a6 181 PANTHER PTHR17490 3 178 4.7E-34 T 23-04-2016 SD28_RS01715 2f0cf41a96f1268cf6bff54ef34b22a6 181 SUPERFAMILY SSF55821 3 179 1.19E-33 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain SD28_RS01715 2f0cf41a96f1268cf6bff54ef34b22a6 181 Pfam PF01300 Telomere recombination 13 178 6.5E-31 T 23-04-2016 IPR006070 YrdC-like domain GO:0003725 SD28_RS01715 2f0cf41a96f1268cf6bff54ef34b22a6 181 Gene3D G3DSA:3.90.870.10 4 179 9.9E-35 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain SD28_RS01715 2f0cf41a96f1268cf6bff54ef34b22a6 181 PANTHER PTHR17490:SF8 3 178 4.7E-34 T 23-04-2016 SD28_RS04935 3d0b9fcf4985077f5b2f51e09700c494 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 5.0E-28 T 23-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 SD28_RS04935 3d0b9fcf4985077f5b2f51e09700c494 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 2.3E-37 T 23-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 SD28_RS04935 3d0b9fcf4985077f5b2f51e09700c494 72 SUPERFAMILY SSF50249 1 70 1.56E-28 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS04935 3d0b9fcf4985077f5b2f51e09700c494 72 SMART SM00316 4 72 2.7E-6 T 23-04-2016 IPR022967 RNA-binding domain, S1 SD28_RS04935 3d0b9fcf4985077f5b2f51e09700c494 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.034 T 23-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 SD28_RS04935 3d0b9fcf4985077f5b2f51e09700c494 72 PANTHER PTHR33370 1 72 2.2E-47 T 23-04-2016 SD28_RS04935 3d0b9fcf4985077f5b2f51e09700c494 72 Gene3D G3DSA:2.40.50.140 1 72 8.8E-39 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS06290 410a4847870842819cbf028da1b16af3 466 PANTHER PTHR32057 3 466 2.6E-127 T 23-04-2016 SD28_RS06290 410a4847870842819cbf028da1b16af3 466 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 9 435 3.9E-102 T 23-04-2016 IPR003846 Uncharacterised protein family UPF0061 SD28_RS02695 d169ca5b7b02c3cb3863547927c955c7 230 Pfam PF09335 SNARE associated Golgi protein 69 184 1.5E-24 T 23-04-2016 IPR032816 SNARE associated Golgi protein SD28_RS02695 d169ca5b7b02c3cb3863547927c955c7 230 PANTHER PTHR12677 1 230 4.0E-37 T 23-04-2016 IPR015414 Transmembrane protein TMEM64/TMEM41 GO:0016021 SD28_RS03030 35631c0778a38045f9711193c4decb43 220 Pfam PF05036 Sporulation related domain 127 191 3.1E-8 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 SD28_RS03030 35631c0778a38045f9711193c4decb43 220 Gene3D G3DSA:3.30.70.1070 125 192 6.0E-8 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 SD28_RS03030 35631c0778a38045f9711193c4decb43 220 SUPERFAMILY SSF110997 126 194 1.2E-10 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 SD28_RS06865 2e77bfcec3c9e531f4fa82653fc0ab18 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 226 2.6E-25 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SD28_RS06865 2e77bfcec3c9e531f4fa82653fc0ab18 231 PANTHER PTHR26402:SF578 5 230 9.6E-78 T 23-04-2016 SD28_RS06865 2e77bfcec3c9e531f4fa82653fc0ab18 231 SUPERFAMILY SSF52172 5 187 3.92E-37 T 23-04-2016 IPR011006 CheY-like superfamily SD28_RS06865 2e77bfcec3c9e531f4fa82653fc0ab18 231 Gene3D G3DSA:3.40.50.2300 4 126 3.2E-34 T 23-04-2016 SD28_RS06865 2e77bfcec3c9e531f4fa82653fc0ab18 231 SMART SM00448 5 116 8.4E-37 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 SD28_RS06865 2e77bfcec3c9e531f4fa82653fc0ab18 231 Pfam PF00072 Response regulator receiver domain 7 116 3.0E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 SD28_RS06865 2e77bfcec3c9e531f4fa82653fc0ab18 231 SMART SM00862 152 227 3.9E-23 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SD28_RS06865 2e77bfcec3c9e531f4fa82653fc0ab18 231 Gene3D G3DSA:1.10.10.10 131 229 1.5E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS06865 2e77bfcec3c9e531f4fa82653fc0ab18 231 PANTHER PTHR26402 5 230 9.6E-78 T 23-04-2016 SD28_RS05435 a0cc6f0c9a75c3e7c6201ab83d593acf 93 SUPERFAMILY SSF48600 7 88 1.98E-23 T 23-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 SD28_RS05435 a0cc6f0c9a75c3e7c6201ab83d593acf 93 SMART SM00830 13 93 2.5E-23 T 23-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 SD28_RS05435 a0cc6f0c9a75c3e7c6201ab83d593acf 93 Pfam PF01817 Chorismate mutase type II 13 90 1.9E-21 T 23-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 SD28_RS05435 a0cc6f0c9a75c3e7c6201ab83d593acf 93 Gene3D G3DSA:1.20.59.10 5 90 2.1E-22 T 23-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 SD28_RS03975 118536d73f86bcc0da68978c922fa74f 244 PANTHER PTHR12029 3 185 4.1E-29 T 23-04-2016 SD28_RS03975 118536d73f86bcc0da68978c922fa74f 244 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 240 1.8E-71 T 23-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 SD28_RS03975 118536d73f86bcc0da68978c922fa74f 244 Pfam PF00588 SpoU rRNA Methylase family 5 156 2.8E-30 T 23-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 SD28_RS03975 118536d73f86bcc0da68978c922fa74f 244 PIRSF PIRSF004808 1 243 1.5E-77 T 23-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 SD28_RS03975 118536d73f86bcc0da68978c922fa74f 244 SUPERFAMILY SSF75217 4 163 5.69E-33 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases SD28_RS03975 118536d73f86bcc0da68978c922fa74f 244 Gene3D G3DSA:3.40.1280.10 3 162 8.6E-31 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal SD28_RS05570 efe55405b22a17cafeb5c245bd261dbf 282 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 159 174 2.8E-5 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS05570 efe55405b22a17cafeb5c245bd261dbf 282 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 113 133 2.8E-5 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS05570 efe55405b22a17cafeb5c245bd261dbf 282 PANTHER PTHR11089 4 269 7.0E-58 T 23-04-2016 SD28_RS05570 efe55405b22a17cafeb5c245bd261dbf 282 TIGRFAM TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 3 261 7.0E-84 T 23-04-2016 IPR019991 GTP-binding protein, ribosome biogenesis SD28_RS05570 efe55405b22a17cafeb5c245bd261dbf 282 Gene3D G3DSA:1.10.1580.10 171 254 1.7E-14 T 23-04-2016 IPR023179 GTP-binding protein, orthogonal bundle domain SD28_RS05570 efe55405b22a17cafeb5c245bd261dbf 282 SUPERFAMILY SSF52540 8 178 5.46E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05570 efe55405b22a17cafeb5c245bd261dbf 282 PIRSF PIRSF006230 1 266 3.6E-88 T 23-04-2016 IPR016478 GTPase, MTG1 SD28_RS05570 efe55405b22a17cafeb5c245bd261dbf 282 Gene3D G3DSA:3.40.50.300 14 168 1.5E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS05570 efe55405b22a17cafeb5c245bd261dbf 282 Pfam PF01926 50S ribosome-binding GTPase 113 172 3.8E-14 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS04040 219cfef7c5a07a5eaa2f71cf3b703848 673 Pfam PF04488 Glycosyltransferase sugar-binding region containing DXD motif 160 223 2.1E-4 T 23-04-2016 IPR007577 Glycosyltransferase, DXD sugar-binding motif SD28_RS04885 608c5f4d6172c60759c54e207461beb7 143 PANTHER PTHR12901 1 142 2.0E-45 T 23-04-2016 SD28_RS04885 608c5f4d6172c60759c54e207461beb7 143 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 134 1.1E-25 T 23-04-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain SD28_RS04885 608c5f4d6172c60759c54e207461beb7 143 SUPERFAMILY SSF55961 1 142 4.87E-30 T 23-04-2016 SD28_RS04885 608c5f4d6172c60759c54e207461beb7 143 PANTHER PTHR12901:SF7 1 142 2.0E-45 T 23-04-2016 SD28_RS04885 608c5f4d6172c60759c54e207461beb7 143 Gene3D G3DSA:3.30.530.20 1 142 7.1E-39 T 23-04-2016 IPR023393 START-like domain SD28_RS04055 6c0cc1257500d4c3bdce5336d39dcf55 490 Gene3D G3DSA:1.20.1600.10 57 474 1.1E-72 T 23-04-2016 SD28_RS04055 6c0cc1257500d4c3bdce5336d39dcf55 490 PANTHER PTHR30203 4 489 2.1E-59 T 23-04-2016 SD28_RS04055 6c0cc1257500d4c3bdce5336d39dcf55 490 Pfam PF02321 Outer membrane efflux protein 68 263 2.2E-20 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 SD28_RS04055 6c0cc1257500d4c3bdce5336d39dcf55 490 Pfam PF02321 Outer membrane efflux protein 289 470 1.0E-19 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 SD28_RS04055 6c0cc1257500d4c3bdce5336d39dcf55 490 PANTHER PTHR30203:SF15 4 489 2.1E-59 T 23-04-2016 SD28_RS04055 6c0cc1257500d4c3bdce5336d39dcf55 490 SUPERFAMILY SSF56954 5 473 4.19E-74 T 23-04-2016 SD28_RS04055 6c0cc1257500d4c3bdce5336d39dcf55 490 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 13 472 1.7E-66 T 23-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 SD28_RS07340 5eb97058cb6090a734540ca4e482a6f6 218 Pfam PF02163 Peptidase family M50 129 186 5.1E-7 T 23-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 SD28_RS07340 5eb97058cb6090a734540ca4e482a6f6 218 PANTHER PTHR22939 1 202 1.8E-39 T 23-04-2016 SD28_RS07340 5eb97058cb6090a734540ca4e482a6f6 218 PANTHER PTHR22939:SF104 1 202 1.8E-39 T 23-04-2016 SD28_RS04995 0343d6be5854f14ec384b1569914eb91 314 Pfam PF00665 Integrase core domain 163 263 5.6E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 SD28_RS04995 0343d6be5854f14ec384b1569914eb91 314 PANTHER PTHR10948 1 311 2.0E-68 T 23-04-2016 SD28_RS04995 0343d6be5854f14ec384b1569914eb91 314 Gene3D G3DSA:3.30.420.10 175 309 2.1E-16 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS04995 0343d6be5854f14ec384b1569914eb91 314 SUPERFAMILY SSF53098 163 309 1.52E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS04995 0343d6be5854f14ec384b1569914eb91 314 Pfam PF13936 Helix-turn-helix domain 4 45 3.1E-10 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain SD28_RS04995 0343d6be5854f14ec384b1569914eb91 314 SUPERFAMILY SSF46689 3 116 2.69E-5 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 SD28_RS04800 aba972c2f033fe6b90929258f47f0caa 467 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 10 451 2.2E-101 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS04800 aba972c2f033fe6b90929258f47f0caa 467 Gene3D G3DSA:1.20.1250.20 255 452 8.7E-21 T 23-04-2016 SD28_RS04800 aba972c2f033fe6b90929258f47f0caa 467 Gene3D G3DSA:1.20.1250.20 18 216 5.3E-18 T 23-04-2016 SD28_RS04800 aba972c2f033fe6b90929258f47f0caa 467 PRINTS PR00171 Sugar transporter signature 354 375 1.2E-23 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS04800 aba972c2f033fe6b90929258f47f0caa 467 PRINTS PR00171 Sugar transporter signature 107 126 1.2E-23 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS04800 aba972c2f033fe6b90929258f47f0caa 467 PRINTS PR00171 Sugar transporter signature 22 32 1.2E-23 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS04800 aba972c2f033fe6b90929258f47f0caa 467 PRINTS PR00171 Sugar transporter signature 264 274 1.2E-23 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS04800 aba972c2f033fe6b90929258f47f0caa 467 PRINTS PR00171 Sugar transporter signature 377 389 1.2E-23 T 23-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 SD28_RS04800 aba972c2f033fe6b90929258f47f0caa 467 Pfam PF00083 Sugar (and other) transporter 14 453 3.9E-105 T 23-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 SD28_RS04800 aba972c2f033fe6b90929258f47f0caa 467 SUPERFAMILY SSF103473 4 452 3.53E-59 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS04800 aba972c2f033fe6b90929258f47f0caa 467 ProSitePatterns PS00216 Sugar transport proteins signature 1. 305 322 - T 23-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 SD28_RS04800 aba972c2f033fe6b90929258f47f0caa 467 PANTHER PTHR23500 11 452 3.9E-137 T 23-04-2016 SD28_RS01375 64c46e36f189ffd2f66e44065be1b2fd 489 Gene3D G3DSA:3.40.50.1110 444 483 4.2E-48 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain SD28_RS01375 64c46e36f189ffd2f66e44065be1b2fd 489 Gene3D G3DSA:3.40.50.1110 159 397 4.2E-48 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain SD28_RS01375 64c46e36f189ffd2f66e44065be1b2fd 489 SUPERFAMILY SSF52266 165 368 7.33E-17 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain SD28_RS01375 64c46e36f189ffd2f66e44065be1b2fd 489 SUPERFAMILY SSF52266 457 485 7.33E-17 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain SD28_RS01375 64c46e36f189ffd2f66e44065be1b2fd 489 PANTHER PTHR22835 162 383 1.8E-15 T 23-04-2016 SD28_RS01375 64c46e36f189ffd2f66e44065be1b2fd 489 PANTHER PTHR22835 445 481 1.8E-15 T 23-04-2016 SD28_RS01375 64c46e36f189ffd2f66e44065be1b2fd 489 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 166 481 3.8E-11 T 23-04-2016 IPR001087 GDSL lipase/esterase GO:0016788 SD28_RS01375 64c46e36f189ffd2f66e44065be1b2fd 489 PANTHER PTHR22835:SF222 162 383 1.8E-15 T 23-04-2016 SD28_RS01375 64c46e36f189ffd2f66e44065be1b2fd 489 PANTHER PTHR22835:SF222 445 481 1.8E-15 T 23-04-2016 SD28_RS02635 f49064d2f674a9fe96f3f25e048315b6 82 SUPERFAMILY SSF54565 1 78 1.31E-29 T 23-04-2016 IPR023803 Ribosomal protein S16 domain SD28_RS02635 f49064d2f674a9fe96f3f25e048315b6 82 Pfam PF00886 Ribosomal protein S16 8 68 2.0E-26 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02635 f49064d2f674a9fe96f3f25e048315b6 82 Gene3D G3DSA:3.30.1320.10 1 79 6.6E-34 T 23-04-2016 IPR023803 Ribosomal protein S16 domain SD28_RS02635 f49064d2f674a9fe96f3f25e048315b6 82 PANTHER PTHR12919 1 78 7.3E-41 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02635 f49064d2f674a9fe96f3f25e048315b6 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 1.5E-31 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02635 f49064d2f674a9fe96f3f25e048315b6 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 25.155 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05895 f146eab3fd5684d93a719e6524dad834 416 PANTHER PTHR11958:SF49 1 414 3.4E-192 T 23-04-2016 SD28_RS05895 f146eab3fd5684d93a719e6524dad834 416 Gene3D G3DSA:1.10.3860.10 5 406 3.3E-108 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05895 f146eab3fd5684d93a719e6524dad834 416 PANTHER PTHR11958 1 414 3.4E-192 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05895 f146eab3fd5684d93a719e6524dad834 416 SUPERFAMILY SSF118215 7 400 2.62E-109 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05895 f146eab3fd5684d93a719e6524dad834 416 Pfam PF00375 Sodium:dicarboxylate symporter family 7 400 5.7E-108 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05895 f146eab3fd5684d93a719e6524dad834 416 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 295 318 - T 23-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05895 f146eab3fd5684d93a719e6524dad834 416 PRINTS PR00173 Glutamate-aspartate symporter signature 327 346 8.3E-31 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05895 f146eab3fd5684d93a719e6524dad834 416 PRINTS PR00173 Glutamate-aspartate symporter signature 72 97 8.3E-31 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05895 f146eab3fd5684d93a719e6524dad834 416 PRINTS PR00173 Glutamate-aspartate symporter signature 191 210 8.3E-31 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05895 f146eab3fd5684d93a719e6524dad834 416 PRINTS PR00173 Glutamate-aspartate symporter signature 1 21 8.3E-31 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05895 f146eab3fd5684d93a719e6524dad834 416 PRINTS PR00173 Glutamate-aspartate symporter signature 292 318 8.3E-31 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS05895 f146eab3fd5684d93a719e6524dad834 416 PRINTS PR00173 Glutamate-aspartate symporter signature 42 62 8.3E-31 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 SD28_RS04820 0f174f7a9d09180870d21e8c7615184d 518 SUPERFAMILY SSF52091 415 497 1.65E-7 T 23-04-2016 IPR002645 STAS domain SD28_RS04820 0f174f7a9d09180870d21e8c7615184d 518 Pfam PF00916 Sulfate permease family 9 373 2.3E-51 T 23-04-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 SD28_RS04820 0f174f7a9d09180870d21e8c7615184d 518 PANTHER PTHR11814 6 492 1.2E-145 T 23-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 SD28_RS04820 0f174f7a9d09180870d21e8c7615184d 518 Gene3D G3DSA:3.30.750.24 420 496 1.3E-4 T 23-04-2016 IPR002645 STAS domain SD28_RS04820 0f174f7a9d09180870d21e8c7615184d 518 PANTHER PTHR11814:SF76 6 492 1.2E-145 T 23-04-2016 SD28_RS04130 b4d81bb40846efc00251f442e474c2f8 470 Pfam PF04488 Glycosyltransferase sugar-binding region containing DXD motif 40 83 4.2E-5 T 23-04-2016 IPR007577 Glycosyltransferase, DXD sugar-binding motif SD28_RS04130 b4d81bb40846efc00251f442e474c2f8 470 SUPERFAMILY SSF53448 354 431 2.06E-6 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS04130 b4d81bb40846efc00251f442e474c2f8 470 SUPERFAMILY SSF53448 4 206 2.06E-6 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS02960 dbcd42ad011a8280e239a654958d461e 141 Gene3D G3DSA:1.10.940.10 7 140 3.1E-28 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 SD28_RS02960 dbcd42ad011a8280e239a654958d461e 141 Pfam PF01029 NusB family 10 135 2.1E-23 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 SD28_RS02960 dbcd42ad011a8280e239a654958d461e 141 PANTHER PTHR11078 7 141 6.8E-20 T 23-04-2016 IPR011605 NusB antitermination factor GO:0006353 SD28_RS02960 dbcd42ad011a8280e239a654958d461e 141 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 8 136 1.4E-30 T 23-04-2016 IPR011605 NusB antitermination factor GO:0006353 SD28_RS02960 dbcd42ad011a8280e239a654958d461e 141 SUPERFAMILY SSF48013 7 138 3.14E-27 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 SD28_RS04370 5f0c1eb4eefdb022a9357a66be8cba64 300 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 3 271 6.2E-70 T 23-04-2016 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 UniPathway: UPA00537|UniPathway: UPA00537 SD28_RS04370 5f0c1eb4eefdb022a9357a66be8cba64 300 SUPERFAMILY SSF55681 1 241 4.56E-65 T 23-04-2016 SD28_RS04370 5f0c1eb4eefdb022a9357a66be8cba64 300 PANTHER PTHR12561 1 273 6.5E-87 T 23-04-2016 SD28_RS04370 5f0c1eb4eefdb022a9357a66be8cba64 300 Pfam PF03099 Biotin/lipoate A/B protein ligase family 56 155 1.2E-6 T 23-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 SD28_RS04370 5f0c1eb4eefdb022a9357a66be8cba64 300 Gene3D G3DSA:3.90.1550.10 1 241 1.9E-75 T 23-04-2016 SD28_RS04370 5f0c1eb4eefdb022a9357a66be8cba64 300 PANTHER PTHR12561:SF3 1 273 6.5E-87 T 23-04-2016 SD28_RS07790 f669e60dd4c6b77600930cd9d128bfd7 132 Pfam PF13356 Domain of unknown function (DUF4102) 16 99 7.5E-14 T 23-04-2016 IPR025166 Domain of unknown function DUF4102 SD28_RS07790 f669e60dd4c6b77600930cd9d128bfd7 132 PANTHER PTHR30629 10 104 1.8E-19 T 23-04-2016 SD28_RS02090 b4b29795e508fccbc595bb7a23e00b5f 288 SUPERFAMILY SSF48452 49 121 6.59E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS02090 b4b29795e508fccbc595bb7a23e00b5f 288 SMART SM00028 78 111 1.3E-8 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 SD28_RS02090 b4b29795e508fccbc595bb7a23e00b5f 288 Gene3D G3DSA:1.25.40.10 31 125 3.3E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS02090 b4b29795e508fccbc595bb7a23e00b5f 288 Pfam PF00515 Tetratricopeptide repeat 79 111 8.4E-11 T 23-04-2016 IPR001440 Tetratricopeptide repeat 1 GO:0005515 SD28_RS03210 5f47920052cb350cd4343aa8183690db 203 Pfam PF01121 Dephospho-CoA kinase 9 182 6.3E-46 T 23-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 SD28_RS03210 5f47920052cb350cd4343aa8183690db 203 Gene3D G3DSA:3.40.50.300 6 199 1.8E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03210 5f47920052cb350cd4343aa8183690db 203 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 9 185 1.5E-43 T 23-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 SD28_RS03210 5f47920052cb350cd4343aa8183690db 203 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 6 202 23.322 T 23-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 SD28_RS03210 5f47920052cb350cd4343aa8183690db 203 SUPERFAMILY SSF52540 9 197 1.38E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03210 5f47920052cb350cd4343aa8183690db 203 PANTHER PTHR10695 6 199 4.8E-41 T 23-04-2016 SD28_RS06650 dcdb110b2f5f40cb77127c036fdf1854 99 Pfam PF05598 Transposase domain (DUF772) 47 97 2.6E-14 T 23-04-2016 IPR008490 Transposase InsH, N-terminal SD28_RS00515 904b81706b87261fb7d98b8407e892fd 125 Pfam PF04138 GtrA-like protein 9 123 1.9E-20 T 23-04-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 SD28_RS04255 0e9a22682135d4c2caab70983857bd77 453 SUPERFAMILY SSF161070 25 435 4.71E-7 T 23-04-2016 SD28_RS00545 fabd880e0a6acca5ed0f4a1908428707 270 PANTHER PTHR30269 15 270 6.3E-23 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 SD28_RS00545 fabd880e0a6acca5ed0f4a1908428707 270 PANTHER PTHR30269:SF15 15 270 6.3E-23 T 23-04-2016 SD28_RS04615 f9c424b027dc8505c77346cfe1aa4036 532 SUPERFAMILY SSF51182 18 79 1.46E-6 T 23-04-2016 IPR011051 RmlC-like cupin domain SD28_RS04615 f9c424b027dc8505c77346cfe1aa4036 532 Gene3D G3DSA:2.60.120.10 18 81 5.2E-7 T 23-04-2016 IPR014710 RmlC-like jelly roll fold SD28_RS04615 f9c424b027dc8505c77346cfe1aa4036 532 Pfam PF09334 tRNA synthetases class I (M) 107 449 4.4E-36 T 23-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS04615 f9c424b027dc8505c77346cfe1aa4036 532 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 113 124 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS04615 f9c424b027dc8505c77346cfe1aa4036 532 Gene3D G3DSA:3.40.50.620 312 329 8.5E-21 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS04615 f9c424b027dc8505c77346cfe1aa4036 532 Gene3D G3DSA:3.40.50.620 364 450 8.5E-21 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS04615 f9c424b027dc8505c77346cfe1aa4036 532 Gene3D G3DSA:3.40.50.620 103 212 8.5E-21 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS04615 f9c424b027dc8505c77346cfe1aa4036 532 Gene3D G3DSA:2.170.220.10 213 311 1.7E-8 T 23-04-2016 SD28_RS04615 f9c424b027dc8505c77346cfe1aa4036 532 SUPERFAMILY SSF52374 273 462 2.22E-33 T 23-04-2016 SD28_RS04615 f9c424b027dc8505c77346cfe1aa4036 532 SUPERFAMILY SSF52374 104 239 2.22E-33 T 23-04-2016 SD28_RS00175 f3138cde0776aabb0b8ba3b605d9adc7 439 SMART SM00729 136 361 1.7E-50 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 SD28_RS00175 f3138cde0776aabb0b8ba3b605d9adc7 439 Pfam PF01938 TRAM domain 373 439 9.4E-6 T 23-04-2016 IPR002792 TRAM domain SD28_RS00175 f3138cde0776aabb0b8ba3b605d9adc7 439 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 5 439 60.475 T 23-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 SD28_RS00175 f3138cde0776aabb0b8ba3b605d9adc7 439 SUPERFAMILY SSF102114 124 366 2.88E-46 T 23-04-2016 SD28_RS00175 f3138cde0776aabb0b8ba3b605d9adc7 439 PANTHER PTHR11918:SF57 5 439 1.1E-208 T 23-04-2016 SD28_RS00175 f3138cde0776aabb0b8ba3b605d9adc7 439 PANTHER PTHR11918 5 439 1.1E-208 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein SD28_RS00175 f3138cde0776aabb0b8ba3b605d9adc7 439 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 6 437 1.5E-171 T 23-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 SD28_RS00175 f3138cde0776aabb0b8ba3b605d9adc7 439 Gene3D G3DSA:2.40.50.140 376 438 1.6E-20 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS00175 f3138cde0776aabb0b8ba3b605d9adc7 439 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 6 438 2.3E-104 T 23-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 SD28_RS00175 f3138cde0776aabb0b8ba3b605d9adc7 439 Pfam PF00919 Uncharacterized protein family UPF0004 6 92 6.8E-20 T 23-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 SD28_RS00175 f3138cde0776aabb0b8ba3b605d9adc7 439 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 140 160 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 SD28_RS00175 f3138cde0776aabb0b8ba3b605d9adc7 439 Pfam PF04055 Radical SAM superfamily 142 319 5.4E-28 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 SD28_RS00175 f3138cde0776aabb0b8ba3b605d9adc7 439 Gene3D G3DSA:3.80.30.20 134 373 5.0E-68 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe SD28_RS02720 517e0563abfec9ef173af8fb8eaa7f3a 484 PANTHER PTHR32024 1 484 3.1E-171 T 23-04-2016 SD28_RS02720 517e0563abfec9ef173af8fb8eaa7f3a 484 PIRSF PIRSF006247 1 484 2.5E-172 T 23-04-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 SD28_RS02720 517e0563abfec9ef173af8fb8eaa7f3a 484 Pfam PF02386 Cation transport protein 38 478 2.8E-64 T 23-04-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 SD28_RS02720 517e0563abfec9ef173af8fb8eaa7f3a 484 PANTHER PTHR32024:SF2 1 484 3.1E-171 T 23-04-2016 SD28_RS00535 27e495a4fbd9bbd12dc5d59a9e713004 200 Gene3D G3DSA:3.90.79.10 61 195 1.6E-26 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 SD28_RS00535 27e495a4fbd9bbd12dc5d59a9e713004 200 Pfam PF00293 NUDIX domain 66 178 2.1E-13 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 SD28_RS00535 27e495a4fbd9bbd12dc5d59a9e713004 200 SUPERFAMILY SSF55811 56 187 4.2E-28 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 SD28_RS00535 27e495a4fbd9bbd12dc5d59a9e713004 200 Pfam PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal 4 51 3.5E-8 T 23-04-2016 SD28_RS00535 27e495a4fbd9bbd12dc5d59a9e713004 200 PANTHER PTHR22769 9 192 6.1E-37 T 23-04-2016 SD28_RS00535 27e495a4fbd9bbd12dc5d59a9e713004 200 PANTHER PTHR22769:SF32 9 192 6.1E-37 T 23-04-2016 SD28_RS02780 2591bb7a905ecfc0c2887c4b84cf389c 561 Gene3D G3DSA:3.90.550.10 131 336 1.3E-12 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS02780 2591bb7a905ecfc0c2887c4b84cf389c 561 Pfam PF13641 Glycosyltransferase like family 2 130 338 2.9E-10 T 23-04-2016 SD28_RS02780 2591bb7a905ecfc0c2887c4b84cf389c 561 PANTHER PTHR10587 35 287 7.5E-14 T 23-04-2016 SD28_RS02780 2591bb7a905ecfc0c2887c4b84cf389c 561 SUPERFAMILY SSF53448 131 470 6.82E-28 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS07760 39949190435f5310a10747e286b7aa34 202 Gene3D G3DSA:2.60.450.10 168 191 2.4E-7 T 23-04-2016 SD28_RS07760 39949190435f5310a10747e286b7aa34 202 Gene3D G3DSA:2.60.450.10 97 127 2.4E-7 T 23-04-2016 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 PIRSF PIRSF001529 1 426 1.9E-176 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 PRINTS PR00981 Seryl-tRNA synthetase signature 318 331 9.3E-33 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 PRINTS PR00981 Seryl-tRNA synthetase signature 353 369 9.3E-33 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 PRINTS PR00981 Seryl-tRNA synthetase signature 335 351 9.3E-33 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 PRINTS PR00981 Seryl-tRNA synthetase signature 278 291 9.3E-33 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 PRINTS PR00981 Seryl-tRNA synthetase signature 266 278 9.3E-33 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 Gene3D G3DSA:3.30.930.10 105 422 1.4E-135 T 23-04-2016 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 SUPERFAMILY SSF46589 1 112 6.28E-28 T 23-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 PANTHER PTHR11778:SF0 1 426 7.2E-199 T 23-04-2016 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 SUPERFAMILY SSF55681 116 422 1.87E-95 T 23-04-2016 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 PANTHER PTHR11778 1 426 7.2E-199 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 2.7E-26 T 23-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 419 3.8E-168 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 Gene3D G3DSA:1.10.287.40 1 104 2.6E-23 T 23-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 424 40.025 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 SD28_RS06265 9f37f7ec8d7a7180235de6d5632576dc 426 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 222 402 9.3E-34 T 23-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS05565 17e43f158f6f996a06f9430502e172dd 377 SUPERFAMILY SSF51556 57 352 3.93E-95 T 23-04-2016 IPR032466 Metal-dependent hydrolase SD28_RS05565 17e43f158f6f996a06f9430502e172dd 377 PIRSF PIRSF038994 1 377 4.4E-124 T 23-04-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395 SD28_RS05565 17e43f158f6f996a06f9430502e172dd 377 PANTHER PTHR11113 2 377 7.8E-132 T 23-04-2016 SD28_RS05565 17e43f158f6f996a06f9430502e172dd 377 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 4 376 1.3E-102 T 23-04-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395 SD28_RS05565 17e43f158f6f996a06f9430502e172dd 377 Gene3D G3DSA:3.20.20.140 63 352 1.4E-106 T 23-04-2016 SD28_RS05565 17e43f158f6f996a06f9430502e172dd 377 PANTHER PTHR11113:SF7 2 377 7.8E-132 T 23-04-2016 SD28_RS05565 17e43f158f6f996a06f9430502e172dd 377 Gene3D G3DSA:2.30.40.10 4 62 1.8E-8 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 SD28_RS05565 17e43f158f6f996a06f9430502e172dd 377 SUPERFAMILY SSF51338 2 57 1.09E-7 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 SD28_RS05565 17e43f158f6f996a06f9430502e172dd 377 SUPERFAMILY SSF51338 353 370 1.09E-7 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 SD28_RS05565 17e43f158f6f996a06f9430502e172dd 377 Pfam PF01979 Amidohydrolase family 53 371 7.4E-25 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 SD28_RS00950 f56526ed96f32c04651253813806d1d6 232 PANTHER PTHR30292 1 230 7.7E-41 T 23-04-2016 SD28_RS00950 f56526ed96f32c04651253813806d1d6 232 SUPERFAMILY SSF88713 3 229 7.26E-51 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 SD28_RS00950 f56526ed96f32c04651253813806d1d6 232 Pfam PF03746 LamB/YcsF family 4 228 6.7E-53 T 23-04-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF SD28_RS00950 f56526ed96f32c04651253813806d1d6 232 PANTHER PTHR30292:SF0 1 230 7.7E-41 T 23-04-2016 SD28_RS03885 cba9af0339cc9363d0f60954e8515b21 221 Gene3D G3DSA:3.40.50.1000 1 211 9.5E-24 T 23-04-2016 IPR023214 HAD-like domain SD28_RS03885 cba9af0339cc9363d0f60954e8515b21 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 4 183 4.3E-13 T 23-04-2016 IPR023214 HAD-like domain SD28_RS03885 cba9af0339cc9363d0f60954e8515b21 221 SUPERFAMILY SSF56784 1 211 5.02E-27 T 23-04-2016 IPR023214 HAD-like domain SD28_RS03885 cba9af0339cc9363d0f60954e8515b21 221 PANTHER PTHR12725:SF79 1 213 8.6E-28 T 23-04-2016 SD28_RS03885 cba9af0339cc9363d0f60954e8515b21 221 PANTHER PTHR12725 1 213 8.6E-28 T 23-04-2016 SD28_RS03885 cba9af0339cc9363d0f60954e8515b21 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 74 184 9.5E-9 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 SD28_RS00215 30b16f9879889e86c0539908cd5cc8c9 266 Pfam PF01066 CDP-alcohol phosphatidyltransferase 15 79 7.8E-13 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 SD28_RS00215 30b16f9879889e86c0539908cd5cc8c9 266 PANTHER PTHR15362 15 152 2.3E-21 T 23-04-2016 SD28_RS00215 30b16f9879889e86c0539908cd5cc8c9 266 PANTHER PTHR15362:SF2 15 152 2.3E-21 T 23-04-2016 SD28_RS00215 30b16f9879889e86c0539908cd5cc8c9 266 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 57 79 - T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 SD28_RS02265 21d809441b4c1e14f94ed204ae979854 185 Gene3D G3DSA:1.10.132.20 67 184 6.2E-42 T 23-04-2016 IPR023584 Ribosome recycling factor domain SD28_RS02265 21d809441b4c1e14f94ed204ae979854 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 26.408 T 23-04-2016 IPR002661 Ribosome recycling factor GO:0006412 SD28_RS02265 21d809441b4c1e14f94ed204ae979854 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 184 2.6E-65 T 23-04-2016 IPR002661 Ribosome recycling factor GO:0006412 SD28_RS02265 21d809441b4c1e14f94ed204ae979854 185 PANTHER PTHR20982 1 185 6.8E-69 T 23-04-2016 IPR002661 Ribosome recycling factor GO:0006412 SD28_RS02265 21d809441b4c1e14f94ed204ae979854 185 SUPERFAMILY SSF55194 1 184 1.7E-65 T 23-04-2016 IPR023584 Ribosome recycling factor domain SD28_RS02265 21d809441b4c1e14f94ed204ae979854 185 Pfam PF01765 Ribosome recycling factor 20 183 2.0E-57 T 23-04-2016 IPR023584 Ribosome recycling factor domain SD28_RS00425 1b816aede14e8aec2a19f3c7ca43cb3b 168 Pfam PF02600 Disulfide bond formation protein DsbB 12 152 4.2E-20 T 23-04-2016 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 SD28_RS00425 1b816aede14e8aec2a19f3c7ca43cb3b 168 SUPERFAMILY SSF158442 13 153 2.35E-17 T 23-04-2016 SD28_RS00425 1b816aede14e8aec2a19f3c7ca43cb3b 168 Gene3D G3DSA:1.20.1550.10 14 164 8.1E-19 T 23-04-2016 IPR023380 Disulphide bond formation protein DsbB-like domain SD28_RS01825 2cadece7bab1b099d311ae481a8c7d0b 513 SUPERFAMILY SSF90123 16 316 2.88E-21 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 SD28_RS01825 2cadece7bab1b099d311ae481a8c7d0b 513 Gene3D G3DSA:1.20.1560.10 14 313 1.0E-15 T 23-04-2016 SD28_RS00745 828b647125731a3627bf98db2ec968de 432 Gene3D G3DSA:1.20.1250.20 11 199 1.2E-22 T 23-04-2016 SD28_RS00745 828b647125731a3627bf98db2ec968de 432 SUPERFAMILY SSF103473 403 427 1.83E-50 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS00745 828b647125731a3627bf98db2ec968de 432 SUPERFAMILY SSF103473 7 376 1.83E-50 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS00745 828b647125731a3627bf98db2ec968de 432 Gene3D G3DSA:1.20.1250.20 215 428 5.2E-13 T 23-04-2016 SD28_RS00745 828b647125731a3627bf98db2ec968de 432 Pfam PF07690 Major Facilitator Superfamily 28 364 4.8E-32 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS00745 828b647125731a3627bf98db2ec968de 432 PANTHER PTHR23512:SF6 9 379 4.8E-70 T 23-04-2016 SD28_RS00745 828b647125731a3627bf98db2ec968de 432 PANTHER PTHR23512:SF6 397 432 4.8E-70 T 23-04-2016 SD28_RS00745 828b647125731a3627bf98db2ec968de 432 PANTHER PTHR23512 9 379 4.8E-70 T 23-04-2016 SD28_RS00745 828b647125731a3627bf98db2ec968de 432 PANTHER PTHR23512 397 432 4.8E-70 T 23-04-2016 SD28_RS02835 e825937f68f28102b8d1c0f967377466 254 PANTHER PTHR30283:SF3 2 254 1.4E-87 T 23-04-2016 SD28_RS02835 e825937f68f28102b8d1c0f967377466 254 Pfam PF03883 Protein of unknown function (DUF328) 1 243 3.3E-82 T 23-04-2016 IPR005583 Peroxide stress protein YaaA SD28_RS02835 e825937f68f28102b8d1c0f967377466 254 PANTHER PTHR30283 2 254 1.4E-87 T 23-04-2016 SD28_RS02835 e825937f68f28102b8d1c0f967377466 254 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 254 30.785 T 23-04-2016 IPR005583 Peroxide stress protein YaaA SD28_RS03595 8a49b8826f337d16d1ac37e8acc1c417 365 Gene3D G3DSA:1.20.1250.20 177 359 5.9E-5 T 23-04-2016 SD28_RS03595 8a49b8826f337d16d1ac37e8acc1c417 365 Pfam PF07690 Major Facilitator Superfamily 5 291 3.6E-17 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS03595 8a49b8826f337d16d1ac37e8acc1c417 365 Gene3D G3DSA:1.20.1250.20 10 153 3.7E-12 T 23-04-2016 SD28_RS03595 8a49b8826f337d16d1ac37e8acc1c417 365 SUPERFAMILY SSF103473 9 357 1.7E-28 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS05335 213f204da30a325e0776a864d726f173 95 SUPERFAMILY SSF46785 3 90 2.5E-13 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS05335 213f204da30a325e0776a864d726f173 95 PANTHER PTHR37318 1 94 3.5E-18 T 23-04-2016 SD28_RS05335 213f204da30a325e0776a864d726f173 95 Pfam PF13601 Winged helix DNA-binding domain 10 88 2.8E-27 T 23-04-2016 IPR027395 Winged helix DNA-binding domain SD28_RS05335 213f204da30a325e0776a864d726f173 95 Gene3D G3DSA:1.10.10.10 2 89 4.6E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS01085 e5dc402ad91895576d42cd353114638c 307 Gene3D G3DSA:3.90.226.10 34 160 2.7E-37 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS01085 e5dc402ad91895576d42cd353114638c 307 Gene3D G3DSA:3.90.226.10 198 272 2.7E-37 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS01085 e5dc402ad91895576d42cd353114638c 307 PANTHER PTHR30341:SF1 1 301 2.1E-78 T 23-04-2016 SD28_RS01085 e5dc402ad91895576d42cd353114638c 307 PANTHER PTHR30341 1 301 2.1E-78 T 23-04-2016 SD28_RS01085 e5dc402ad91895576d42cd353114638c 307 SUPERFAMILY SSF52096 36 168 9.74E-36 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS01085 e5dc402ad91895576d42cd353114638c 307 SUPERFAMILY SSF52096 197 259 9.74E-36 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS01085 e5dc402ad91895576d42cd353114638c 307 Pfam PF01343 Peptidase family S49 123 264 9.3E-30 T 23-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 SD28_RS05145 0993005a862f213e87e7617de27487f4 260 Pfam PF00106 short chain dehydrogenase 6 199 5.4E-52 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05145 0993005a862f213e87e7617de27487f4 260 Gene3D G3DSA:3.40.50.720 2 258 1.6E-70 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05145 0993005a862f213e87e7617de27487f4 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.8E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05145 0993005a862f213e87e7617de27487f4 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.8E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05145 0993005a862f213e87e7617de27487f4 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.8E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05145 0993005a862f213e87e7617de27487f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.7E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05145 0993005a862f213e87e7617de27487f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 1.7E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05145 0993005a862f213e87e7617de27487f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.7E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05145 0993005a862f213e87e7617de27487f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.7E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05145 0993005a862f213e87e7617de27487f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.7E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05145 0993005a862f213e87e7617de27487f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.7E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05145 0993005a862f213e87e7617de27487f4 260 SUPERFAMILY SSF51735 4 258 4.14E-70 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05145 0993005a862f213e87e7617de27487f4 260 PANTHER PTHR24322 156 188 5.9E-50 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05145 0993005a862f213e87e7617de27487f4 260 PANTHER PTHR24322 10 140 5.9E-50 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR SD28_RS05320 78a909684f8f1f4295791c338a7615df 136 SUPERFAMILY SSF53098 2 134 3.19E-30 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS05320 78a909684f8f1f4295791c338a7615df 136 Pfam PF03652 Holliday junction resolvase 4 134 1.1E-33 T 23-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 SD28_RS05320 78a909684f8f1f4295791c338a7615df 136 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 6 133 4.0E-28 T 23-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 SD28_RS05320 78a909684f8f1f4295791c338a7615df 136 Gene3D G3DSA:3.30.420.140 3 135 2.8E-35 T 23-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 SD28_RS05320 78a909684f8f1f4295791c338a7615df 136 SMART SM00732 3 103 1.1E-22 T 23-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 SD28_RS05320 78a909684f8f1f4295791c338a7615df 136 PANTHER PTHR33317 1 135 9.6E-28 T 23-04-2016 SD28_RS05320 78a909684f8f1f4295791c338a7615df 136 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 3 136 17.0 T 23-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 SD28_RS00880 942c843aebb20d41d3200e2347456ec0 419 Pfam PF00285 Citrate synthase, C-terminal domain 46 408 3.0E-126 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 SD28_RS00880 942c843aebb20d41d3200e2347456ec0 419 Gene3D G3DSA:1.10.580.10 52 276 4.6E-87 T 23-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 SD28_RS00880 942c843aebb20d41d3200e2347456ec0 419 PRINTS PR00143 Citrate synthase signature 356 372 3.2E-51 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 SD28_RS00880 942c843aebb20d41d3200e2347456ec0 419 PRINTS PR00143 Citrate synthase signature 376 390 3.2E-51 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 SD28_RS00880 942c843aebb20d41d3200e2347456ec0 419 PRINTS PR00143 Citrate synthase signature 162 175 3.2E-51 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 SD28_RS00880 942c843aebb20d41d3200e2347456ec0 419 PRINTS PR00143 Citrate synthase signature 237 265 3.2E-51 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 SD28_RS00880 942c843aebb20d41d3200e2347456ec0 419 PRINTS PR00143 Citrate synthase signature 292 312 3.2E-51 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 SD28_RS00880 942c843aebb20d41d3200e2347456ec0 419 PRINTS PR00143 Citrate synthase signature 215 230 3.2E-51 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 SD28_RS00880 942c843aebb20d41d3200e2347456ec0 419 SUPERFAMILY SSF48256 10 417 6.28E-142 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 SD28_RS00880 942c843aebb20d41d3200e2347456ec0 419 PIRSF PIRSF001369 38 419 1.4E-148 T 23-04-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 SD28_RS00880 942c843aebb20d41d3200e2347456ec0 419 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 15 418 1.0E-175 T 23-04-2016 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 UniPathway: UPA00223 SD28_RS00880 942c843aebb20d41d3200e2347456ec0 419 ProSitePatterns PS00480 Citrate synthase signature. 299 311 - T 23-04-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 SD28_RS00880 942c843aebb20d41d3200e2347456ec0 419 Gene3D G3DSA:1.10.230.10 277 370 2.8E-39 T 23-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain SD28_RS00880 942c843aebb20d41d3200e2347456ec0 419 PANTHER PTHR11739 39 417 2.1E-173 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 SD28_RS05735 6ba47e75eb86c24a70a0f81a3d694ee2 96 Pfam PF01386 Ribosomal L25p family 6 93 2.4E-27 T 23-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 SD28_RS05735 6ba47e75eb86c24a70a0f81a3d694ee2 96 Gene3D G3DSA:2.40.240.10 4 96 3.3E-34 T 23-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 SD28_RS05735 6ba47e75eb86c24a70a0f81a3d694ee2 96 SUPERFAMILY SSF50715 4 96 2.09E-30 T 23-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 SD28_RS05735 6ba47e75eb86c24a70a0f81a3d694ee2 96 PANTHER PTHR33284 1 96 2.1E-30 T 23-04-2016 SD28_RS05735 6ba47e75eb86c24a70a0f81a3d694ee2 96 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 4 96 26.705 T 23-04-2016 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 SD28_RS05735 6ba47e75eb86c24a70a0f81a3d694ee2 96 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 7 96 4.0E-42 T 23-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 SD28_RS05735 6ba47e75eb86c24a70a0f81a3d694ee2 96 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 6 96 3.4E-22 T 23-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 SD28_RS04955 b2d8dc7169b2ec01b7de19433d59d061 252 Gene3D G3DSA:3.30.1330.30 4 91 1.3E-10 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like SD28_RS04955 b2d8dc7169b2ec01b7de19433d59d061 252 Gene3D G3DSA:3.40.1280.10 102 248 8.7E-36 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal SD28_RS04955 b2d8dc7169b2ec01b7de19433d59d061 252 SUPERFAMILY SSF55315 9 94 1.12E-9 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like SD28_RS04955 b2d8dc7169b2ec01b7de19433d59d061 252 Pfam PF00588 SpoU rRNA Methylase family 104 241 1.0E-28 T 23-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 SD28_RS04955 b2d8dc7169b2ec01b7de19433d59d061 252 SUPERFAMILY SSF75217 101 247 5.69E-33 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases SD28_RS04955 b2d8dc7169b2ec01b7de19433d59d061 252 PANTHER PTHR12029 8 249 7.9E-40 T 23-04-2016 SD28_RS04955 b2d8dc7169b2ec01b7de19433d59d061 252 SMART SM00967 28 96 0.0062 T 23-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 SD28_RS00070 6980321ff23992e302807db256e19072 195 PANTHER PTHR10003:SF40 60 195 2.5E-34 T 23-04-2016 SD28_RS00070 6980321ff23992e302807db256e19072 195 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 182 193 - T 23-04-2016 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854 SD28_RS00070 6980321ff23992e302807db256e19072 195 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 57 193 6.6E-27 T 23-04-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 SD28_RS00070 6980321ff23992e302807db256e19072 195 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 93 103 - T 23-04-2016 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854 SD28_RS00070 6980321ff23992e302807db256e19072 195 PANTHER PTHR10003 60 195 2.5E-34 T 23-04-2016 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone MetaCyc: PWY-6854 SD28_RS00070 6980321ff23992e302807db256e19072 195 Gene3D G3DSA:2.60.40.200 51 193 4.3E-36 T 23-04-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 SD28_RS00070 6980321ff23992e302807db256e19072 195 SUPERFAMILY SSF49329 52 193 4.19E-38 T 23-04-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 SD28_RS05750 1f7578defa0c1f6eb55e887961480eaa 145 PANTHER PTHR23091 1 145 7.4E-18 T 23-04-2016 SD28_RS05750 1f7578defa0c1f6eb55e887961480eaa 145 SUPERFAMILY SSF55729 1 143 1.61E-24 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase SD28_RS05750 1f7578defa0c1f6eb55e887961480eaa 145 Gene3D G3DSA:3.40.630.30 11 144 1.0E-24 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase SD28_RS05750 1f7578defa0c1f6eb55e887961480eaa 145 Pfam PF00583 Acetyltransferase (GNAT) family 59 121 6.0E-10 T 23-04-2016 IPR000182 GNAT domain GO:0008080 SD28_RS00720 e9317b84996d069badcdade72f53702b 269 Hamap MF_01393 ATP synthase subunit a [atpB]. 15 269 15.245 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 SD28_RS00720 e9317b84996d069badcdade72f53702b 269 PRINTS PR00123 ATP synthase A subunit signature 196 218 1.1E-14 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 SD28_RS00720 e9317b84996d069badcdade72f53702b 269 PRINTS PR00123 ATP synthase A subunit signature 97 113 1.1E-14 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 SD28_RS00720 e9317b84996d069badcdade72f53702b 269 PRINTS PR00123 ATP synthase A subunit signature 249 264 1.1E-14 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 SD28_RS00720 e9317b84996d069badcdade72f53702b 269 ProSitePatterns PS00449 ATP synthase a subunit signature. 199 208 - T 23-04-2016 IPR023011 ATPase, F0 complex, subunit A, active site SD28_RS00720 e9317b84996d069badcdade72f53702b 269 SUPERFAMILY SSF81336 90 263 2.09E-39 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 SD28_RS00720 e9317b84996d069badcdade72f53702b 269 PANTHER PTHR11410:SF7 133 269 1.3E-77 T 23-04-2016 SD28_RS00720 e9317b84996d069badcdade72f53702b 269 PANTHER PTHR11410:SF7 9 115 1.3E-77 T 23-04-2016 SD28_RS00720 e9317b84996d069badcdade72f53702b 269 PANTHER PTHR11410 133 269 1.3E-77 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 SD28_RS00720 e9317b84996d069badcdade72f53702b 269 PANTHER PTHR11410 9 115 1.3E-77 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 SD28_RS00720 e9317b84996d069badcdade72f53702b 269 Pfam PF00119 ATP synthase A chain 40 262 9.6E-54 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 SD28_RS00720 e9317b84996d069badcdade72f53702b 269 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 35 264 1.3E-44 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 SD28_RS00720 e9317b84996d069badcdade72f53702b 269 Gene3D G3DSA:1.20.120.220 90 269 1.9E-48 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 SD28_RS04780 5e2c427df3e72aeb2888428cd5232f66 390 Pfam PF00999 Sodium/hydrogen exchanger family 11 376 1.8E-59 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 SD28_RS04780 5e2c427df3e72aeb2888428cd5232f66 390 PANTHER PTHR16254:SF14 6 387 2.8E-85 T 23-04-2016 SD28_RS04780 5e2c427df3e72aeb2888428cd5232f66 390 PANTHER PTHR16254 6 387 2.8E-85 T 23-04-2016 SD28_RS04765 cdbc81a735cb09b1a74586f42ce7a4d2 465 PANTHER PTHR30563 1 465 4.8E-96 T 23-04-2016 SD28_RS04765 cdbc81a735cb09b1a74586f42ce7a4d2 465 Pfam PF02646 RmuC family 154 444 1.1E-99 T 23-04-2016 IPR003798 DNA recombination RmuC SD28_RS07300 0199b327ecf6526e57812f4ef2b2a3a7 611 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 611 6.1E-240 T 23-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 SD28_RS07300 0199b327ecf6526e57812f4ef2b2a3a7 611 Pfam PF01380 SIS domain 463 593 1.3E-23 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 SD28_RS07300 0199b327ecf6526e57812f4ef2b2a3a7 611 Pfam PF01380 SIS domain 290 417 2.2E-28 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 SD28_RS07300 0199b327ecf6526e57812f4ef2b2a3a7 611 SUPERFAMILY SSF56235 2 230 2.32E-70 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal SD28_RS07300 0199b327ecf6526e57812f4ef2b2a3a7 611 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 611 38.586 T 23-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 SD28_RS07300 0199b327ecf6526e57812f4ef2b2a3a7 611 PANTHER PTHR10937:SF0 1 611 5.5E-302 T 23-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 SD28_RS07300 0199b327ecf6526e57812f4ef2b2a3a7 611 Pfam PF13522 Glutamine amidotransferase domain 63 181 3.5E-21 T 23-04-2016 SD28_RS07300 0199b327ecf6526e57812f4ef2b2a3a7 611 PANTHER PTHR10937 1 611 5.5E-302 T 23-04-2016 SD28_RS07300 0199b327ecf6526e57812f4ef2b2a3a7 611 Gene3D G3DSA:3.40.50.10490 446 611 1.4E-60 T 23-04-2016 SD28_RS07300 0199b327ecf6526e57812f4ef2b2a3a7 611 Gene3D G3DSA:3.60.20.10 2 229 1.3E-76 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal SD28_RS07300 0199b327ecf6526e57812f4ef2b2a3a7 611 Gene3D G3DSA:3.40.50.10490 243 445 8.2E-71 T 23-04-2016 SD28_RS07300 0199b327ecf6526e57812f4ef2b2a3a7 611 SUPERFAMILY SSF53697 245 611 1.95E-104 T 23-04-2016 SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 44.929 T 23-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.6E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.6E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.6E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.6E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 SUPERFAMILY SSF52540 3 301 7.09E-86 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 PANTHER PTHR23305 1 363 7.0E-207 T 23-04-2016 SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 Gene3D G3DSA:3.40.50.300 4 130 2.1E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 Gene3D G3DSA:3.40.50.300 201 266 2.1E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 2.3E-39 T 23-04-2016 IPR013029 Domain of unknown function DUF933 SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 1.7E-158 T 23-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 PIRSF PIRSF006641 1 363 2.4E-159 T 23-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 Pfam PF01926 50S ribosome-binding GTPase 5 124 2.4E-23 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 SUPERFAMILY SSF81271 279 360 2.18E-36 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 Gene3D G3DSA:3.10.20.30 267 363 2.1E-49 T 23-04-2016 IPR012675 Beta-grasp domain SD28_RS06345 83e8dd6b5aa3e8065a7017093ee9a433 363 Gene3D G3DSA:1.10.150.300 131 200 1.0E-26 T 23-04-2016 IPR023192 TGS-like domain SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 Gene3D G3DSA:1.10.1160.10 232 312 1.5E-37 T 23-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 463 5.6E-182 T 23-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 194 202 6.5E-27 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 19 30 6.5E-27 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 178 188 6.5E-27 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 5 17 6.5E-27 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 34 47 6.5E-27 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 Gene3D G3DSA:1.10.10.350 362 463 3.9E-23 T 23-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 Gene3D G3DSA:3.40.50.620 180 229 2.2E-51 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 Gene3D G3DSA:3.40.50.620 2 66 2.2E-51 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 SUPERFAMILY SSF48163 298 463 7.85E-37 T 23-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 Gene3D G3DSA:3.90.800.10 67 179 1.6E-32 T 23-04-2016 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 SUPERFAMILY SSF52374 2 297 2.17E-109 T 23-04-2016 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 2 463 33.412 T 23-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 304 4.7E-110 T 23-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 PANTHER PTHR11451:SF41 399 414 5.2E-97 T 23-04-2016 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 PANTHER PTHR11451:SF41 3 337 5.2E-97 T 23-04-2016 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 8 19 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 PANTHER PTHR11451 399 414 5.2E-97 T 23-04-2016 SD28_RS00675 7c5f46edafd9fc6d49b81499f17f9b74 467 PANTHER PTHR11451 3 337 5.2E-97 T 23-04-2016 SD28_RS00200 46f23c528fe1d4dcd955b2c9cad79cf2 146 PANTHER PTHR30558:SF7 10 145 4.3E-46 T 23-04-2016 SD28_RS00200 46f23c528fe1d4dcd955b2c9cad79cf2 146 TIGRFAM TIGR02801 tolR: protein TolR 15 142 1.2E-45 T 23-04-2016 IPR014168 Biopolymer transport, TolR GO:0015031|GO:0016021 SD28_RS00200 46f23c528fe1d4dcd955b2c9cad79cf2 146 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 143 1.0E-29 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 SD28_RS00200 46f23c528fe1d4dcd955b2c9cad79cf2 146 PANTHER PTHR30558 10 145 4.3E-46 T 23-04-2016 SD28_RS03290 b26a097c9c8ecf21d9c9a056f9249c80 398 PANTHER PTHR11751 22 395 8.7E-63 T 23-04-2016 SD28_RS03290 b26a097c9c8ecf21d9c9a056f9249c80 398 SUPERFAMILY SSF53383 12 393 2.2E-66 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS03290 b26a097c9c8ecf21d9c9a056f9249c80 398 Gene3D G3DSA:3.40.640.10 66 278 9.5E-50 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS03290 b26a097c9c8ecf21d9c9a056f9249c80 398 Pfam PF00155 Aminotransferase class I and II 41 385 8.5E-44 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SD28_RS03290 b26a097c9c8ecf21d9c9a056f9249c80 398 Gene3D G3DSA:3.90.1150.10 279 393 1.8E-12 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS02615 69809a58741a84892a6fbb966093c660 75 Pfam PF06305 Protein of unknown function (DUF1049) 25 61 2.6E-9 T 23-04-2016 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 SD28_RS06225 77dc41aef24ac5963b6324bd44526f0f 202 PANTHER PTHR30506:SF2 1 201 7.1E-51 T 23-04-2016 SD28_RS06225 77dc41aef24ac5963b6324bd44526f0f 202 Pfam PF03458 UPF0126 domain 3 74 1.3E-17 T 23-04-2016 IPR005115 Uncharacterised domain UPF0126 SD28_RS06225 77dc41aef24ac5963b6324bd44526f0f 202 Pfam PF03458 UPF0126 domain 86 167 1.5E-16 T 23-04-2016 IPR005115 Uncharacterised domain UPF0126 SD28_RS06225 77dc41aef24ac5963b6324bd44526f0f 202 PANTHER PTHR30506 1 201 7.1E-51 T 23-04-2016 SD28_RS02890 3919835ed8b3f98d3d663f5b2c3008e9 259 PANTHER PTHR30413 1 258 2.3E-99 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 SD28_RS02890 3919835ed8b3f98d3d663f5b2c3008e9 259 PANTHER PTHR30413:SF2 1 258 2.3E-99 T 23-04-2016 SD28_RS02890 3919835ed8b3f98d3d663f5b2c3008e9 259 PIRSF PIRSF006648 3 256 2.9E-23 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 SD28_RS02890 3919835ed8b3f98d3d663f5b2c3008e9 259 Pfam PF01061 ABC-2 type transporter 11 221 1.1E-31 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 SD28_RS01625 0d3bec7b57d79c24fe4ba464eefc3fed 403 PRINTS PR00166 Aromatic amino acid permease signature 83 103 3.0E-66 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01625 0d3bec7b57d79c24fe4ba464eefc3fed 403 PRINTS PR00166 Aromatic amino acid permease signature 221 240 3.0E-66 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01625 0d3bec7b57d79c24fe4ba464eefc3fed 403 PRINTS PR00166 Aromatic amino acid permease signature 282 301 3.0E-66 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01625 0d3bec7b57d79c24fe4ba464eefc3fed 403 PRINTS PR00166 Aromatic amino acid permease signature 317 335 3.0E-66 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01625 0d3bec7b57d79c24fe4ba464eefc3fed 403 PRINTS PR00166 Aromatic amino acid permease signature 38 57 3.0E-66 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01625 0d3bec7b57d79c24fe4ba464eefc3fed 403 PRINTS PR00166 Aromatic amino acid permease signature 148 168 3.0E-66 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01625 0d3bec7b57d79c24fe4ba464eefc3fed 403 PRINTS PR00166 Aromatic amino acid permease signature 11 34 3.0E-66 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01625 0d3bec7b57d79c24fe4ba464eefc3fed 403 PRINTS PR00166 Aromatic amino acid permease signature 338 357 3.0E-66 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01625 0d3bec7b57d79c24fe4ba464eefc3fed 403 PRINTS PR00166 Aromatic amino acid permease signature 182 204 3.0E-66 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01625 0d3bec7b57d79c24fe4ba464eefc3fed 403 Pfam PF03222 Tryptophan/tyrosine permease family 7 386 7.4E-91 T 23-04-2016 IPR018227 Tryptophan/tyrosine permease GO:0003333 SD28_RS01625 0d3bec7b57d79c24fe4ba464eefc3fed 403 PANTHER PTHR32195 1 397 7.0E-96 T 23-04-2016 SD28_RS01625 0d3bec7b57d79c24fe4ba464eefc3fed 403 PANTHER PTHR32195:SF17 1 397 7.0E-96 T 23-04-2016 SD28_RS05040 7f79d5953ec30d59481ccf5d0032c787 362 Gene3D G3DSA:3.30.70.20 198 271 2.0E-8 T 23-04-2016 SD28_RS05040 7f79d5953ec30d59481ccf5d0032c787 362 PANTHER PTHR30002:SF4 2 358 4.0E-123 T 23-04-2016 SD28_RS05040 7f79d5953ec30d59481ccf5d0032c787 362 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 19 357 4.9E-119 T 23-04-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 SD28_RS05040 7f79d5953ec30d59481ccf5d0032c787 362 PANTHER PTHR30002 2 358 4.0E-123 T 23-04-2016 SD28_RS05040 7f79d5953ec30d59481ccf5d0032c787 362 Pfam PF13484 4Fe-4S double cluster binding domain 200 263 1.0E-19 T 23-04-2016 SD28_RS05040 7f79d5953ec30d59481ccf5d0032c787 362 Pfam PF08331 Domain of unknown function (DUF1730) 62 144 2.2E-18 T 23-04-2016 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700|UniPathway: UPA00392 SD28_RS05040 7f79d5953ec30d59481ccf5d0032c787 362 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 200 211 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SD28_RS05040 7f79d5953ec30d59481ccf5d0032c787 362 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 6 322 45.066 T 23-04-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 SD28_RS05040 7f79d5953ec30d59481ccf5d0032c787 362 SUPERFAMILY SSF54862 197 293 2.51E-16 T 23-04-2016 SD28_RS00160 9b1a74c97809a244126bd68e72e2b724 252 PANTHER PTHR30269 1 252 3.3E-24 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 SD28_RS00160 9b1a74c97809a244126bd68e72e2b724 252 Pfam PF01925 Sulfite exporter TauE/SafE 7 250 1.6E-35 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 SD28_RS00540 92976d54a49a7fc15cf4d7fb3af86864 508 PANTHER PTHR30389:SF1 1 508 5.2E-282 T 23-04-2016 SD28_RS00540 92976d54a49a7fc15cf4d7fb3af86864 508 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 325 487 5.1E-50 T 23-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 SD28_RS00540 92976d54a49a7fc15cf4d7fb3af86864 508 SUPERFAMILY SSF117457 315 487 1.44E-62 T 23-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 SD28_RS00540 92976d54a49a7fc15cf4d7fb3af86864 508 Pfam PF05681 Fumarate hydratase (Fumerase) 11 285 2.4E-95 T 23-04-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 SD28_RS00540 92976d54a49a7fc15cf4d7fb3af86864 508 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 11 285 2.7E-61 T 23-04-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 SD28_RS00540 92976d54a49a7fc15cf4d7fb3af86864 508 Gene3D G3DSA:3.20.130.10 303 489 9.4E-72 T 23-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 SD28_RS00540 92976d54a49a7fc15cf4d7fb3af86864 508 PANTHER PTHR30389 1 508 5.2E-282 T 23-04-2016 SD28_RS00540 92976d54a49a7fc15cf4d7fb3af86864 508 PIRSF PIRSF001394 1 506 2.1E-199 T 23-04-2016 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 SD28_RS00540 92976d54a49a7fc15cf4d7fb3af86864 508 Pfam PF05683 Fumarase C-terminus 289 489 8.7E-77 T 23-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 SD28_RS03240 f7b4c666c3271c846c5040b6eba51c83 265 SUPERFAMILY SSF46894 195 257 1.02E-12 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SD28_RS03240 f7b4c666c3271c846c5040b6eba51c83 265 Gene3D G3DSA:1.10.10.10 201 260 1.6E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS03240 f7b4c666c3271c846c5040b6eba51c83 265 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 231 243 4.2E-6 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 SD28_RS03240 f7b4c666c3271c846c5040b6eba51c83 265 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 201 215 4.2E-6 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 SD28_RS03240 f7b4c666c3271c846c5040b6eba51c83 265 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 215 231 4.2E-6 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 SD28_RS03240 f7b4c666c3271c846c5040b6eba51c83 265 Pfam PF00196 Bacterial regulatory proteins, luxR family 201 253 1.2E-9 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 SD28_RS03240 f7b4c666c3271c846c5040b6eba51c83 265 SMART SM00421 198 255 1.5E-6 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 SD28_RS00900 76c572dc23a84910170f11e704cfbac7 894 Gene3D G3DSA:3.20.20.80 303 634 2.3E-26 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 SD28_RS00900 76c572dc23a84910170f11e704cfbac7 894 Gene3D G3DSA:3.20.20.80 4 268 1.8E-16 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 SD28_RS00900 76c572dc23a84910170f11e704cfbac7 894 SUPERFAMILY SSF51445 302 634 6.75E-27 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily SD28_RS00900 76c572dc23a84910170f11e704cfbac7 894 SUPERFAMILY SSF51445 5 268 2.76E-19 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily SD28_RS00900 76c572dc23a84910170f11e704cfbac7 894 Pfam PF00704 Glycosyl hydrolases family 18 7 180 1.3E-7 T 23-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 SD28_RS01830 2d17f67fe86047a9d970b08f929863ea 349 Pfam PF13437 HlyD family secretion protein 177 265 1.6E-8 T 23-04-2016 SD28_RS01830 2d17f67fe86047a9d970b08f929863ea 349 Gene3D G3DSA:2.40.50.100 169 206 4.3E-10 T 23-04-2016 SD28_RS01830 2d17f67fe86047a9d970b08f929863ea 349 Gene3D G3DSA:2.40.50.100 53 88 4.3E-10 T 23-04-2016 SD28_RS01830 2d17f67fe86047a9d970b08f929863ea 349 Pfam PF13533 Biotin-lipoyl like 57 87 9.9E-7 T 23-04-2016 SD28_RS01830 2d17f67fe86047a9d970b08f929863ea 349 SUPERFAMILY SSF111369 107 221 4.97E-6 T 23-04-2016 SD28_RS01830 2d17f67fe86047a9d970b08f929863ea 349 PANTHER PTHR30386 1 329 9.3E-29 T 23-04-2016 SD28_RS01830 2d17f67fe86047a9d970b08f929863ea 349 PANTHER PTHR30386:SF8 1 329 9.3E-29 T 23-04-2016 SD28_RS01940 86ba1a0e2486c411cda44798d57b3814 84 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 5 84 2.3E-33 T 23-04-2016 IPR009614 Toxin YoeB GO:0004519|GO:0006401 SD28_RS01940 86ba1a0e2486c411cda44798d57b3814 84 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 5 84 1.6E-37 T 23-04-2016 IPR009614 Toxin YoeB GO:0004519|GO:0006401 SD28_RS01940 86ba1a0e2486c411cda44798d57b3814 84 PANTHER PTHR38039 1 84 2.8E-32 T 23-04-2016 SD28_RS01940 86ba1a0e2486c411cda44798d57b3814 84 PANTHER PTHR38039:SF1 1 84 2.8E-32 T 23-04-2016 SD28_RS01940 86ba1a0e2486c411cda44798d57b3814 84 SUPERFAMILY SSF143011 1 83 6.8E-28 T 23-04-2016 SD28_RS00735 55af18260456d4a23a1947ba574bf566 309 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 14 308 8.0E-72 T 23-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS00735 55af18260456d4a23a1947ba574bf566 309 Pfam PF00849 RNA pseudouridylate synthase 96 246 1.4E-33 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS00735 55af18260456d4a23a1947ba574bf566 309 Gene3D G3DSA:3.10.290.10 14 79 9.8E-5 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 SD28_RS00735 55af18260456d4a23a1947ba574bf566 309 SUPERFAMILY SSF55174 12 111 3.14E-7 T 23-04-2016 SD28_RS00735 55af18260456d4a23a1947ba574bf566 309 SMART SM00363 16 74 8.6E-5 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 SD28_RS00735 55af18260456d4a23a1947ba574bf566 309 PANTHER PTHR11079:SF84 1 72 3.5E-90 T 23-04-2016 SD28_RS00735 55af18260456d4a23a1947ba574bf566 309 PANTHER PTHR11079:SF84 89 309 3.5E-90 T 23-04-2016 SD28_RS00735 55af18260456d4a23a1947ba574bf566 309 PANTHER PTHR11079 1 72 3.5E-90 T 23-04-2016 SD28_RS00735 55af18260456d4a23a1947ba574bf566 309 PANTHER PTHR11079 89 309 3.5E-90 T 23-04-2016 SD28_RS00735 55af18260456d4a23a1947ba574bf566 309 SUPERFAMILY SSF55120 86 307 1.34E-59 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS00735 55af18260456d4a23a1947ba574bf566 309 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 23-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 SD28_RS00375 83789efc46d2897bf6e7841a4b98e935 414 PIRSF PIRSF001491 3 413 8.8E-149 T 23-04-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 SD28_RS00375 83789efc46d2897bf6e7841a4b98e935 414 Gene3D G3DSA:3.30.70.1250 114 238 4.2E-42 T 23-04-2016 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 SD28_RS00375 83789efc46d2897bf6e7841a4b98e935 414 SUPERFAMILY SSF143856 123 238 2.75E-39 T 23-04-2016 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 SD28_RS00375 83789efc46d2897bf6e7841a4b98e935 414 SUPERFAMILY SSF53649 4 114 6.54E-66 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 SD28_RS00375 83789efc46d2897bf6e7841a4b98e935 414 SUPERFAMILY SSF53649 239 410 6.54E-66 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 SD28_RS00375 83789efc46d2897bf6e7841a4b98e935 414 TIGRFAM TIGR01696 deoB: phosphopentomutase 7 407 1.4E-135 T 23-04-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 SD28_RS00375 83789efc46d2897bf6e7841a4b98e935 414 Gene3D G3DSA:3.40.720.10 242 410 7.3E-65 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 SD28_RS00375 83789efc46d2897bf6e7841a4b98e935 414 Gene3D G3DSA:3.40.720.10 4 113 7.3E-65 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 SD28_RS00375 83789efc46d2897bf6e7841a4b98e935 414 Hamap MF_00740 Phosphopentomutase [deoB]. 4 409 46.888 T 23-04-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 SD28_RS00375 83789efc46d2897bf6e7841a4b98e935 414 PANTHER PTHR21110 5 414 1.8E-121 T 23-04-2016 SD28_RS00375 83789efc46d2897bf6e7841a4b98e935 414 PANTHER PTHR21110:SF0 5 414 1.8E-121 T 23-04-2016 SD28_RS00375 83789efc46d2897bf6e7841a4b98e935 414 Pfam PF01676 Metalloenzyme superfamily 5 401 3.2E-33 T 23-04-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 SD28_RS00530 70aba28ab92f8919f4f7d2c470b21586 117 Gene3D G3DSA:3.40.30.10 2 114 4.9E-24 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS00530 70aba28ab92f8919f4f7d2c470b21586 117 SUPERFAMILY SSF52833 2 116 1.45E-25 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS00530 70aba28ab92f8919f4f7d2c470b21586 117 PANTHER PTHR30041:SF3 2 116 2.7E-16 T 23-04-2016 SD28_RS00530 70aba28ab92f8919f4f7d2c470b21586 117 PANTHER PTHR30041 2 116 2.7E-16 T 23-04-2016 SD28_RS00530 70aba28ab92f8919f4f7d2c470b21586 117 Pfam PF03960 ArsC family 43 114 4.1E-10 T 23-04-2016 IPR006660 Arsenate reductase-like SD28_RS02000 1b8d0b6ccb1131faf5ff8842c7853736 336 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 208 221 - T 23-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 SD28_RS02000 1b8d0b6ccb1131faf5ff8842c7853736 336 Pfam PF00146 NADH dehydrogenase 12 324 3.4E-126 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 SD28_RS02000 1b8d0b6ccb1131faf5ff8842c7853736 336 PANTHER PTHR11432:SF3 5 334 1.6E-168 T 23-04-2016 SD28_RS02000 1b8d0b6ccb1131faf5ff8842c7853736 336 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 50 65 - T 23-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 SD28_RS02000 1b8d0b6ccb1131faf5ff8842c7853736 336 PANTHER PTHR11432 5 334 1.6E-168 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 SD28_RS02000 1b8d0b6ccb1131faf5ff8842c7853736 336 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 4 331 25.065 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 Pfam PF00842 Alanine racemase, C-terminal domain 238 365 2.8E-28 T 23-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 SUPERFAMILY SSF50621 235 365 3.28E-33 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 Pfam PF01168 Alanine racemase, N-terminal domain 9 224 2.6E-45 T 23-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 PANTHER PTHR30511:SF0 1 364 2.7E-91 T 23-04-2016 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 Gene3D G3DSA:2.40.37.10 218 365 8.5E-43 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 SMART SM01005 238 367 2.0E-35 T 23-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 30 40 - T 23-04-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 Gene3D G3DSA:3.20.20.10 11 217 3.6E-51 T 23-04-2016 IPR029066 PLP-binding barrel SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 PANTHER PTHR30511 1 364 2.7E-91 T 23-04-2016 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 PRINTS PR00992 Alanine racemase signature 292 309 4.3E-44 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 PRINTS PR00992 Alanine racemase signature 349 362 4.3E-44 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 PRINTS PR00992 Alanine racemase signature 25 41 4.3E-44 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 PRINTS PR00992 Alanine racemase signature 197 224 4.3E-44 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 PRINTS PR00992 Alanine racemase signature 155 166 4.3E-44 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 PRINTS PR00992 Alanine racemase signature 121 133 4.3E-44 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 PRINTS PR00992 Alanine racemase signature 254 269 4.3E-44 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 PRINTS PR00992 Alanine racemase signature 60 78 4.3E-44 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 PRINTS PR00992 Alanine racemase signature 271 286 4.3E-44 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 Hamap MF_01201 Alanine racemase. 1 367 26.404 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 TIGRFAM TIGR00492 alr: alanine racemase 5 364 3.7E-82 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 SD28_RS04170 a68cee38682e32ad240b248a58299ad0 368 SUPERFAMILY SSF51419 8 236 2.49E-49 T 23-04-2016 IPR029066 PLP-binding barrel SD28_RS07775 6f27d694da705b2491e26dd3cda1066e 186 SUPERFAMILY SSF53098 21 183 8.34E-11 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS07775 6f27d694da705b2491e26dd3cda1066e 186 Pfam PF13546 DDE superfamily endonuclease 6 179 9.5E-16 T 23-04-2016 SD28_RS06765 1f7c6bc223ccfe2a530050e28f37514b 330 SUPERFAMILY SSF51735 1 267 5.69E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06765 1f7c6bc223ccfe2a530050e28f37514b 330 PANTHER PTHR10366 6 263 1.8E-120 T 23-04-2016 SD28_RS06765 1f7c6bc223ccfe2a530050e28f37514b 330 Gene3D G3DSA:3.40.50.720 6 222 2.0E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS06765 1f7c6bc223ccfe2a530050e28f37514b 330 PANTHER PTHR10366:SF360 6 263 1.8E-120 T 23-04-2016 SD28_RS06765 1f7c6bc223ccfe2a530050e28f37514b 330 Pfam PF02719 Polysaccharide biosynthesis protein 7 279 1.0E-103 T 23-04-2016 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain SD28_RS06765 1f7c6bc223ccfe2a530050e28f37514b 330 TIGRFAM TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 1 326 6.3E-166 T 23-04-2016 IPR020025 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) KEGG: 00010+4.2.1.11|KEGG: 00520+4.2.1.115|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6143|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|MetaCyc: PWY-7330|MetaCyc: PWY-7331|MetaCyc: PWY-7332|MetaCyc: PWY-7719 SD28_RS05640 df6de3e12b4e1981b647e1025714098c 338 Pfam PF02547 Queuosine biosynthesis protein 4 337 1.3E-132 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 SD28_RS05640 df6de3e12b4e1981b647e1025714098c 338 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 338 1.1E-141 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 SD28_RS05640 df6de3e12b4e1981b647e1025714098c 338 PANTHER PTHR30307:SF0 2 338 2.4E-164 T 23-04-2016 SD28_RS05640 df6de3e12b4e1981b647e1025714098c 338 SUPERFAMILY SSF111337 4 337 7.59E-130 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 SD28_RS05640 df6de3e12b4e1981b647e1025714098c 338 PANTHER PTHR30307 2 338 2.4E-164 T 23-04-2016 SD28_RS05640 df6de3e12b4e1981b647e1025714098c 338 Gene3D G3DSA:2.40.10.240 66 139 6.8E-10 T 23-04-2016 SD28_RS05640 df6de3e12b4e1981b647e1025714098c 338 Gene3D G3DSA:3.40.1780.10 176 337 1.2E-102 T 23-04-2016 SD28_RS05640 df6de3e12b4e1981b647e1025714098c 338 Gene3D G3DSA:3.40.1780.10 1 62 1.2E-102 T 23-04-2016 SD28_RS05640 df6de3e12b4e1981b647e1025714098c 338 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 338 46.273 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 SD28_RS06875 3cccb2989c0f8a8174a43b017465a673 418 Pfam PF13450 NAD(P)-binding Rossmann-like domain 6 72 8.2E-13 T 23-04-2016 SD28_RS06875 3cccb2989c0f8a8174a43b017465a673 418 SUPERFAMILY SSF51905 3 299 1.88E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06875 3cccb2989c0f8a8174a43b017465a673 418 SUPERFAMILY SSF51905 381 412 1.88E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06875 3cccb2989c0f8a8174a43b017465a673 418 PANTHER PTHR10742 1 412 1.1E-122 T 23-04-2016 SD28_RS06875 3cccb2989c0f8a8174a43b017465a673 418 Gene3D G3DSA:3.50.50.60 160 161 1.2E-22 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06875 3cccb2989c0f8a8174a43b017465a673 418 Gene3D G3DSA:3.50.50.60 199 281 1.2E-22 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06875 3cccb2989c0f8a8174a43b017465a673 418 Gene3D G3DSA:3.50.50.60 3 91 1.2E-22 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS06875 3cccb2989c0f8a8174a43b017465a673 418 PANTHER PTHR10742:SF299 1 412 1.1E-122 T 23-04-2016 SD28_RS01760 b4db3bbc07a397c81f15ab701a75bfb6 362 Gene3D G3DSA:3.20.20.80 32 339 3.1E-16 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 SD28_RS01760 b4db3bbc07a397c81f15ab701a75bfb6 362 SUPERFAMILY SSF51445 29 340 2.88E-16 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily SD28_RS01315 18245701aae8c6f940cd7bb9d2c083ae 516 PANTHER PTHR11236 14 510 1.1E-208 T 23-04-2016 SD28_RS01315 18245701aae8c6f940cd7bb9d2c083ae 516 SUPERFAMILY SSF56322 11 508 3.14E-143 T 23-04-2016 IPR005801 ADC synthase GO:0009058 SD28_RS01315 18245701aae8c6f940cd7bb9d2c083ae 516 Gene3D G3DSA:3.60.120.10 16 509 3.0E-141 T 23-04-2016 IPR005801 ADC synthase GO:0009058 SD28_RS01315 18245701aae8c6f940cd7bb9d2c083ae 516 Pfam PF00425 chorismate binding enzyme 240 499 1.4E-80 T 23-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal SD28_RS01315 18245701aae8c6f940cd7bb9d2c083ae 516 PRINTS PR00095 Anthranilate synthase component I signature 347 360 3.2E-21 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 SD28_RS01315 18245701aae8c6f940cd7bb9d2c083ae 516 PRINTS PR00095 Anthranilate synthase component I signature 456 470 3.2E-21 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 SD28_RS01315 18245701aae8c6f940cd7bb9d2c083ae 516 PRINTS PR00095 Anthranilate synthase component I signature 441 455 3.2E-21 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 SD28_RS01315 18245701aae8c6f940cd7bb9d2c083ae 516 PRINTS PR00095 Anthranilate synthase component I signature 361 374 3.2E-21 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 SD28_RS01315 18245701aae8c6f940cd7bb9d2c083ae 516 Pfam PF04715 Anthranilate synthase component I, N terminal region 31 192 7.0E-16 T 23-04-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 SD28_RS01315 18245701aae8c6f940cd7bb9d2c083ae 516 PIRSF PIRSF001373 4 516 1.8E-236 T 23-04-2016 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 SD28_RS01315 18245701aae8c6f940cd7bb9d2c083ae 516 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 18 511 9.8E-206 T 23-04-2016 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 SD28_RS01315 18245701aae8c6f940cd7bb9d2c083ae 516 PANTHER PTHR11236:SF22 14 510 1.1E-208 T 23-04-2016 SD28_RS04660 26619274e79e3b65a56cf2ad5798d561 370 PANTHER PTHR13693 13 366 1.5E-110 T 23-04-2016 SD28_RS04660 26619274e79e3b65a56cf2ad5798d561 370 Gene3D G3DSA:3.40.640.10 48 253 4.7E-63 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS04660 26619274e79e3b65a56cf2ad5798d561 370 SUPERFAMILY SSF53383 16 366 1.92E-79 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS04660 26619274e79e3b65a56cf2ad5798d561 370 Pfam PF00155 Aminotransferase class I and II 28 362 8.8E-38 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SD28_RS04660 26619274e79e3b65a56cf2ad5798d561 370 Gene3D G3DSA:3.90.1150.10 254 362 1.9E-18 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS04660 26619274e79e3b65a56cf2ad5798d561 370 PANTHER PTHR13693:SF53 13 366 1.5E-110 T 23-04-2016 SD28_RS05935 a5cb14f2fa49cef8bca3528f40aa9ec1 407 PANTHER PTHR23508 10 399 1.6E-61 T 23-04-2016 SD28_RS05935 a5cb14f2fa49cef8bca3528f40aa9ec1 407 SUPERFAMILY SSF103473 5 404 6.67E-40 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS05935 a5cb14f2fa49cef8bca3528f40aa9ec1 407 Gene3D G3DSA:1.20.1250.20 225 398 1.0E-7 T 23-04-2016 SD28_RS05935 a5cb14f2fa49cef8bca3528f40aa9ec1 407 Gene3D G3DSA:1.20.1250.20 5 197 9.9E-15 T 23-04-2016 SD28_RS05935 a5cb14f2fa49cef8bca3528f40aa9ec1 407 Pfam PF07690 Major Facilitator Superfamily 19 364 7.0E-23 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS03395 3ddf0227fb1f13fb288fd24cadaa2be8 238 SUPERFAMILY SSF110395 3 206 1.83E-60 T 23-04-2016 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 SD28_RS03395 3ddf0227fb1f13fb288fd24cadaa2be8 238 Gene3D G3DSA:3.20.20.380 1 235 3.0E-77 T 23-04-2016 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 SD28_RS03395 3ddf0227fb1f13fb288fd24cadaa2be8 238 PANTHER PTHR12598 1 204 1.4E-71 T 23-04-2016 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 SD28_RS03395 3ddf0227fb1f13fb288fd24cadaa2be8 238 Pfam PF03932 CutC family 3 204 2.0E-62 T 23-04-2016 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 SD28_RS03395 3ddf0227fb1f13fb288fd24cadaa2be8 238 PANTHER PTHR12598:SF0 1 204 1.4E-71 T 23-04-2016 SD28_RS01945 c7b1ed483c578d4a5c6bc41b88e5610d 85 PANTHER PTHR33713:SF6 1 84 6.8E-18 T 23-04-2016 SD28_RS01945 c7b1ed483c578d4a5c6bc41b88e5610d 85 PANTHER PTHR33713 1 84 6.8E-18 T 23-04-2016 SD28_RS01945 c7b1ed483c578d4a5c6bc41b88e5610d 85 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 5 53 1.1E-8 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM SD28_RS01945 c7b1ed483c578d4a5c6bc41b88e5610d 85 SUPERFAMILY SSF143120 1 82 4.8E-21 T 23-04-2016 SD28_RS01945 c7b1ed483c578d4a5c6bc41b88e5610d 85 Gene3D G3DSA:3.40.1620.10 1 52 4.0E-6 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM SD28_RS01945 c7b1ed483c578d4a5c6bc41b88e5610d 85 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 74 4.0E-17 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM SD28_RS06575 72a82f099fcf27ec76c739bba6a94bac 227 PANTHER PTHR23291:SF37 1 225 3.5E-63 T 23-04-2016 SD28_RS06575 72a82f099fcf27ec76c739bba6a94bac 227 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 22 219 4.7E-37 T 23-04-2016 SD28_RS06575 72a82f099fcf27ec76c739bba6a94bac 227 PANTHER PTHR23291 1 225 3.5E-63 T 23-04-2016 IPR006214 Bax inhibitor 1-related SD28_RS03390 5cbc51f02bdd8ec81a50b0eaa09aa099 193 Gene3D G3DSA:3.30.1400.10 77 190 1.0E-5 T 23-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 SD28_RS03390 5cbc51f02bdd8ec81a50b0eaa09aa099 193 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 78 187 1.2E-6 T 23-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 SD28_RS03390 5cbc51f02bdd8ec81a50b0eaa09aa099 193 SUPERFAMILY SSF64383 79 190 1.09E-5 T 23-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 SD28_RS06255 c846209e1d044e882c509467315d220f 1006 PANTHER PTHR11748:SF35 252 583 3.4E-122 T 23-04-2016 SD28_RS06255 c846209e1d044e882c509467315d220f 1006 PANTHER PTHR11748:SF35 18 199 3.4E-122 T 23-04-2016 SD28_RS06255 c846209e1d044e882c509467315d220f 1006 Gene3D G3DSA:1.10.1060.10 512 684 1.6E-14 T 23-04-2016 SD28_RS06255 c846209e1d044e882c509467315d220f 1006 Pfam PF13183 4Fe-4S dicluster domain 571 668 4.9E-9 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SD28_RS06255 c846209e1d044e882c509467315d220f 1006 Pfam PF02913 FAD linked oxidases, C-terminal domain 284 535 5.0E-50 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 SD28_RS06255 c846209e1d044e882c509467315d220f 1006 SUPERFAMILY SSF56176 18 196 6.91E-46 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 SD28_RS06255 c846209e1d044e882c509467315d220f 1006 SUPERFAMILY SSF56176 243 285 6.91E-46 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 SD28_RS06255 c846209e1d044e882c509467315d220f 1006 Gene3D G3DSA:3.30.465.10 113 285 1.8E-35 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 SD28_RS06255 c846209e1d044e882c509467315d220f 1006 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 654 665 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SD28_RS06255 c846209e1d044e882c509467315d220f 1006 Pfam PF01565 FAD binding domain 56 196 9.0E-30 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 SD28_RS06255 c846209e1d044e882c509467315d220f 1006 SUPERFAMILY SSF55103 288 537 2.13E-47 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 SD28_RS06255 c846209e1d044e882c509467315d220f 1006 SUPERFAMILY SSF46548 558 671 1.2E-7 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 SD28_RS06255 c846209e1d044e882c509467315d220f 1006 Gene3D G3DSA:3.30.43.10 16 112 1.1E-16 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 SD28_RS06255 c846209e1d044e882c509467315d220f 1006 PANTHER PTHR11748 252 583 3.4E-122 T 23-04-2016 SD28_RS06255 c846209e1d044e882c509467315d220f 1006 PANTHER PTHR11748 18 199 3.4E-122 T 23-04-2016 SD28_RS07025 0acd4f3ada6d2b8f89d025615d4d5718 474 Gene3D G3DSA:3.10.50.40 320 438 1.1E-8 T 23-04-2016 SD28_RS07025 0acd4f3ada6d2b8f89d025615d4d5718 474 Gene3D G3DSA:3.10.50.40 213 307 4.0E-8 T 23-04-2016 SD28_RS07025 0acd4f3ada6d2b8f89d025615d4d5718 474 SUPERFAMILY SSF54534 320 424 2.22E-8 T 23-04-2016 SD28_RS07025 0acd4f3ada6d2b8f89d025615d4d5718 474 PANTHER PTHR10657:SF16 59 467 1.9E-19 T 23-04-2016 SD28_RS07025 0acd4f3ada6d2b8f89d025615d4d5718 474 PANTHER PTHR10657 59 467 1.9E-19 T 23-04-2016 SD28_RS07025 0acd4f3ada6d2b8f89d025615d4d5718 474 SUPERFAMILY SSF54534 212 307 5.95E-9 T 23-04-2016 SD28_RS07025 0acd4f3ada6d2b8f89d025615d4d5718 474 Pfam PF09312 SurA N-terminal domain 55 172 4.3E-22 T 23-04-2016 IPR015391 SurA N-terminal SD28_RS07025 0acd4f3ada6d2b8f89d025615d4d5718 474 SUPERFAMILY SSF109998 55 218 3.14E-33 T 23-04-2016 IPR027304 Trigger factor/SurA domain SD28_RS07025 0acd4f3ada6d2b8f89d025615d4d5718 474 Pfam PF00639 PPIC-type PPIASE domain 215 304 2.8E-6 T 23-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 SD28_RS04700 d2b7c6624101cacdbeeb464996f1ada5 390 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site SD28_RS04700 d2b7c6624101cacdbeeb464996f1ada5 390 PIRSF PIRSF005572 1 384 2.5E-113 T 23-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 SD28_RS04700 d2b7c6624101cacdbeeb464996f1ada5 390 PANTHER PTHR11601:SF45 4 386 3.1E-145 T 23-04-2016 SD28_RS04700 d2b7c6624101cacdbeeb464996f1ada5 390 Pfam PF00266 Aminotransferase class-V 4 367 7.0E-75 T 23-04-2016 IPR000192 Aminotransferase class V domain SD28_RS04700 d2b7c6624101cacdbeeb464996f1ada5 390 PANTHER PTHR11601 4 386 3.1E-145 T 23-04-2016 SD28_RS04700 d2b7c6624101cacdbeeb464996f1ada5 390 Gene3D G3DSA:3.90.1150.10 254 376 7.5E-38 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS04700 d2b7c6624101cacdbeeb464996f1ada5 390 Gene3D G3DSA:3.40.640.10 32 253 1.7E-75 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS04700 d2b7c6624101cacdbeeb464996f1ada5 390 SUPERFAMILY SSF53383 3 377 7.07E-95 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS02700 4178badd8d8ea7e19ef4e91d8a653419 787 SUPERFAMILY SSF51445 522 775 2.46E-34 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily SD28_RS02700 4178badd8d8ea7e19ef4e91d8a653419 787 Gene3D G3DSA:2.10.10.20 173 217 1.6E-19 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS02700 4178badd8d8ea7e19ef4e91d8a653419 787 SMART SM00636 503 769 0.0088 T 23-04-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 SD28_RS02700 4178badd8d8ea7e19ef4e91d8a653419 787 Pfam PF00704 Glycosyl hydrolases family 18 529 769 4.6E-17 T 23-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 SD28_RS02700 4178badd8d8ea7e19ef4e91d8a653419 787 SUPERFAMILY SSF51055 163 220 1.31E-16 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS02700 4178badd8d8ea7e19ef4e91d8a653419 787 SMART SM00495 174 219 1.9E-18 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS02700 4178badd8d8ea7e19ef4e91d8a653419 787 SMART SM00495 23 77 3.7 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS02700 4178badd8d8ea7e19ef4e91d8a653419 787 Pfam PF02839 Carbohydrate binding domain 175 216 1.9E-15 T 23-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 SD28_RS02700 4178badd8d8ea7e19ef4e91d8a653419 787 Gene3D G3DSA:3.20.20.80 502 776 1.1E-32 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 SD28_RS05010 24c47e380572890762c88e07d7afca9d 397 PANTHER PTHR23502:SF19 358 389 1.5E-61 T 23-04-2016 SD28_RS05010 24c47e380572890762c88e07d7afca9d 397 PANTHER PTHR23502:SF19 10 281 1.5E-61 T 23-04-2016 SD28_RS05010 24c47e380572890762c88e07d7afca9d 397 SUPERFAMILY SSF103473 4 388 2.35E-49 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS05010 24c47e380572890762c88e07d7afca9d 397 Gene3D G3DSA:1.20.1250.20 10 193 8.5E-29 T 23-04-2016 SD28_RS05010 24c47e380572890762c88e07d7afca9d 397 Pfam PF07690 Major Facilitator Superfamily 20 338 1.1E-38 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS05010 24c47e380572890762c88e07d7afca9d 397 PANTHER PTHR23502 358 389 1.5E-61 T 23-04-2016 SD28_RS05010 24c47e380572890762c88e07d7afca9d 397 PANTHER PTHR23502 10 281 1.5E-61 T 23-04-2016 SD28_RS05010 24c47e380572890762c88e07d7afca9d 397 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 7 363 1.8E-63 T 23-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 SD28_RS07355 9d2b85de31c04647b39a20083b0c8d0f 473 SUPERFAMILY SSF55486 239 263 3.25E-7 T 23-04-2016 SD28_RS07355 9d2b85de31c04647b39a20083b0c8d0f 473 SUPERFAMILY SSF55486 141 203 3.25E-7 T 23-04-2016 SD28_RS07355 9d2b85de31c04647b39a20083b0c8d0f 473 Gene3D G3DSA:3.40.390.10 196 290 1.5E-6 T 23-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 SD28_RS06945 2563c77a0d7ca7761f4e7bc158a42403 293 PANTHER PTHR12001:SF23 14 253 1.8E-83 T 23-04-2016 SD28_RS06945 2563c77a0d7ca7761f4e7bc158a42403 293 PANTHER PTHR12001 14 253 1.8E-83 T 23-04-2016 IPR017446 Polyprenyl synthetase-related SD28_RS06945 2563c77a0d7ca7761f4e7bc158a42403 293 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 77 93 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 SD28_RS06945 2563c77a0d7ca7761f4e7bc158a42403 293 Pfam PF00348 Polyprenyl synthetase 27 269 7.3E-51 T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 SD28_RS06945 2563c77a0d7ca7761f4e7bc158a42403 293 Gene3D G3DSA:1.10.600.10 20 286 3.5E-75 T 23-04-2016 IPR008949 Isoprenoid synthase domain SD28_RS06945 2563c77a0d7ca7761f4e7bc158a42403 293 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 209 221 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 SD28_RS06945 2563c77a0d7ca7761f4e7bc158a42403 293 SUPERFAMILY SSF48576 9 288 2.33E-74 T 23-04-2016 IPR008949 Isoprenoid synthase domain SD28_RS01870 e7b799bb06d7edac71e58bc2ac5f737a 438 Gene3D G3DSA:3.50.50.60 273 302 1.0E-7 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS01870 e7b799bb06d7edac71e58bc2ac5f737a 438 Gene3D G3DSA:3.50.50.60 161 228 1.0E-7 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS01870 e7b799bb06d7edac71e58bc2ac5f737a 438 PANTHER PTHR23024 44 107 1.3E-33 T 23-04-2016 SD28_RS01870 e7b799bb06d7edac71e58bc2ac5f737a 438 Gene3D G3DSA:3.50.50.60 76 160 4.3E-9 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS01870 e7b799bb06d7edac71e58bc2ac5f737a 438 Gene3D G3DSA:3.50.50.60 332 338 4.3E-9 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS01870 e7b799bb06d7edac71e58bc2ac5f737a 438 SUPERFAMILY SSF51905 1 265 4.14E-18 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS01870 e7b799bb06d7edac71e58bc2ac5f737a 438 PANTHER PTHR23024:SF215 44 107 1.3E-33 T 23-04-2016 SD28_RS01870 e7b799bb06d7edac71e58bc2ac5f737a 438 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 2 335 8.9E-120 T 23-04-2016 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase SD28_RS02175 96ebd97c09ed3e2d8db5f1995791e0d3 407 PANTHER PTHR23512:SF1 4 404 7.3E-44 T 23-04-2016 SD28_RS02175 96ebd97c09ed3e2d8db5f1995791e0d3 407 Pfam PF07690 Major Facilitator Superfamily 15 249 2.7E-23 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS02175 96ebd97c09ed3e2d8db5f1995791e0d3 407 Gene3D G3DSA:1.20.1250.20 14 197 9.6E-22 T 23-04-2016 SD28_RS02175 96ebd97c09ed3e2d8db5f1995791e0d3 407 Gene3D G3DSA:1.20.1250.20 216 405 3.1E-14 T 23-04-2016 SD28_RS02175 96ebd97c09ed3e2d8db5f1995791e0d3 407 SUPERFAMILY SSF103473 9 402 8.24E-52 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS02175 96ebd97c09ed3e2d8db5f1995791e0d3 407 PANTHER PTHR23512 4 404 7.3E-44 T 23-04-2016 SD28_RS04880 17514bca0b7ef476437f13ba3b5ebfac 157 Hamap MF_00023 SsrA-binding protein [smpB]. 1 157 69.311 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 SD28_RS04880 17514bca0b7ef476437f13ba3b5ebfac 157 Gene3D G3DSA:2.40.280.10 10 130 2.6E-48 T 23-04-2016 IPR023620 Small protein B SD28_RS04880 17514bca0b7ef476437f13ba3b5ebfac 157 ProSitePatterns PS01317 SsrA-binding protein. 29 41 - T 23-04-2016 IPR020081 SsrA-binding protein, conserved site SD28_RS04880 17514bca0b7ef476437f13ba3b5ebfac 157 PANTHER PTHR30308 1 157 1.4E-71 T 23-04-2016 SD28_RS04880 17514bca0b7ef476437f13ba3b5ebfac 157 TIGRFAM TIGR00086 smpB: SsrA-binding protein 11 153 1.6E-52 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 SD28_RS04880 17514bca0b7ef476437f13ba3b5ebfac 157 SUPERFAMILY SSF74982 5 135 1.96E-49 T 23-04-2016 IPR023620 Small protein B SD28_RS04880 17514bca0b7ef476437f13ba3b5ebfac 157 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 11 135 1.0E-60 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 SD28_RS04880 17514bca0b7ef476437f13ba3b5ebfac 157 PANTHER PTHR30308:SF2 1 157 1.4E-71 T 23-04-2016 SD28_RS04880 17514bca0b7ef476437f13ba3b5ebfac 157 Pfam PF01668 SmpB protein 10 72 1.8E-28 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 SD28_RS01185 7d208d3fb4b59bcce08ed5bad3d4c29b 184 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 3 159 4.1E-43 T 23-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 SD28_RS01185 7d208d3fb4b59bcce08ed5bad3d4c29b 184 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 5 158 5.2E-39 T 23-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 SD28_RS01185 7d208d3fb4b59bcce08ed5bad3d4c29b 184 PANTHER PTHR35850 5 171 1.4E-29 T 23-04-2016 SD28_RS03270 1bb88cf50678bd88e969673a37fad402 421 Gene3D G3DSA:3.30.470.20 111 295 2.9E-12 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS03270 1bb88cf50678bd88e969673a37fad402 421 SUPERFAMILY SSF56059 110 302 9.55E-20 T 23-04-2016 SD28_RS03270 1bb88cf50678bd88e969673a37fad402 421 Pfam PF13535 ATP-grasp domain 152 295 1.8E-10 T 23-04-2016 SD28_RS05680 3e8064360d62da6e29f7ca9c41fe6123 235 PANTHER PTHR30616 23 235 1.5E-63 T 23-04-2016 SD28_RS05680 3e8064360d62da6e29f7ca9c41fe6123 235 SUPERFAMILY SSF64438 5 235 1.83E-65 T 23-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic SD28_RS05680 3e8064360d62da6e29f7ca9c41fe6123 235 Gene3D G3DSA:3.60.140.10 10 234 5.0E-70 T 23-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase SD28_RS05680 3e8064360d62da6e29f7ca9c41fe6123 235 PANTHER PTHR30616:SF3 23 235 1.5E-63 T 23-04-2016 SD28_RS05680 3e8064360d62da6e29f7ca9c41fe6123 235 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 25 234 7.6E-49 T 23-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase SD28_RS05680 3e8064360d62da6e29f7ca9c41fe6123 235 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 19 233 7.2E-58 T 23-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase SD28_RS05820 f332a7a3672fd64912cb1b933932cfef 174 Gene3D G3DSA:3.40.30.10 4 171 1.5E-53 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS05820 f332a7a3672fd64912cb1b933932cfef 174 Pfam PF08534 Redoxin 29 154 5.6E-26 T 23-04-2016 IPR013740 Redoxin GO:0016491 SD28_RS05820 f332a7a3672fd64912cb1b933932cfef 174 PANTHER PTHR10430:SF19 3 152 1.9E-66 T 23-04-2016 SD28_RS05820 f332a7a3672fd64912cb1b933932cfef 174 SUPERFAMILY SSF52833 4 173 4.16E-35 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS05820 f332a7a3672fd64912cb1b933932cfef 174 PANTHER PTHR10430 3 152 1.9E-66 T 23-04-2016 SD28_RS07715 68afd1e7e1b2385070c1e776ad5b69bf 123 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 16 123 1.2E-21 T 23-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein SD28_RS07715 68afd1e7e1b2385070c1e776ad5b69bf 123 Gene3D G3DSA:3.40.1230.10 2 123 1.0E-27 T 23-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein SD28_RS07715 68afd1e7e1b2385070c1e776ad5b69bf 123 SUPERFAMILY SSF64076 2 123 7.19E-24 T 23-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein SD28_RS00510 04ee1cbf4daed70f426aa9be5b7e43d4 293 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 46 282 4.4E-38 T 23-04-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 KEGG: 00480+1.11.1.- SD28_RS00510 04ee1cbf4daed70f426aa9be5b7e43d4 293 Pfam PF04261 Dyp-type peroxidase family 43 279 1.6E-27 T 23-04-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 KEGG: 00480+1.11.1.- SD28_RS00510 04ee1cbf4daed70f426aa9be5b7e43d4 293 PANTHER PTHR30521:SF0 66 280 2.1E-29 T 23-04-2016 SD28_RS00510 04ee1cbf4daed70f426aa9be5b7e43d4 293 PANTHER PTHR30521 66 280 2.1E-29 T 23-04-2016 SD28_RS00510 04ee1cbf4daed70f426aa9be5b7e43d4 293 SUPERFAMILY SSF54909 5 284 3.4E-61 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel SD28_RS04925 8d1fa21bf4ecbfb2d239b2363f22aa63 100 Pfam PF07843 Protein of unknown function (DUF1634) 14 99 5.2E-11 T 23-04-2016 IPR012861 Protein of unknown function DUF1634 SD28_RS00595 fb9b834de0e93833e0023a21939d9cea 267 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SD28_RS00595 fb9b834de0e93833e0023a21939d9cea 267 SUPERFAMILY SSF52540 4 233 1.13E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00595 fb9b834de0e93833e0023a21939d9cea 267 Gene3D G3DSA:3.40.50.300 3 243 4.1E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00595 fb9b834de0e93833e0023a21939d9cea 267 PANTHER PTHR24220:SF368 5 244 8.7E-109 T 23-04-2016 SD28_RS00595 fb9b834de0e93833e0023a21939d9cea 267 PANTHER PTHR24220 5 244 8.7E-109 T 23-04-2016 SD28_RS00595 fb9b834de0e93833e0023a21939d9cea 267 SMART SM00382 28 217 1.2E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS00595 fb9b834de0e93833e0023a21939d9cea 267 Pfam PF00005 ABC transporter 19 168 1.7E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS02160 41fe379764ad69aa9e547ad12f20f363 287 Pfam PF00950 ABC 3 transport family 28 282 1.8E-51 T 23-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 SD28_RS02160 41fe379764ad69aa9e547ad12f20f363 287 PANTHER PTHR30477 19 286 4.8E-52 T 23-04-2016 SD28_RS02160 41fe379764ad69aa9e547ad12f20f363 287 PANTHER PTHR30477:SF0 19 286 4.8E-52 T 23-04-2016 SD28_RS02160 41fe379764ad69aa9e547ad12f20f363 287 SUPERFAMILY SSF81345 10 283 1.83E-31 T 23-04-2016 IPR029022 ABC transporter, BtuC-like SD28_RS03480 0a3b7ca21193246615b3014e3632fce6 71 SMART SM01409 8 61 7.4E-11 T 23-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS03480 0a3b7ca21193246615b3014e3632fce6 71 SUPERFAMILY SSF63562 1 66 4.19E-16 T 23-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS03480 0a3b7ca21193246615b3014e3632fce6 71 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 14.71 T 23-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS03480 0a3b7ca21193246615b3014e3632fce6 71 Gene3D G3DSA:3.90.940.10 1 67 4.2E-10 T 23-04-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS03480 0a3b7ca21193246615b3014e3632fce6 71 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 1.9E-15 T 23-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS03480 0a3b7ca21193246615b3014e3632fce6 71 Pfam PF01192 RNA polymerase Rpb6 8 60 8.8E-12 T 23-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SD28_RS00945 3c728d431e3d7bc43aec28ee6c69520d 269 Pfam PF02626 Allophanate hydrolase subunit 2 27 250 5.4E-39 T 23-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B SD28_RS00945 3c728d431e3d7bc43aec28ee6c69520d 269 Gene3D G3DSA:2.40.100.10 187 264 3.2E-5 T 23-04-2016 IPR029000 Cyclophilin-like domain SD28_RS00945 3c728d431e3d7bc43aec28ee6c69520d 269 SMART SM00797 25 267 1.6E-42 T 23-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B SD28_RS00945 3c728d431e3d7bc43aec28ee6c69520d 269 SUPERFAMILY SSF50891 148 257 8.34E-8 T 23-04-2016 IPR029000 Cyclophilin-like domain SD28_RS00945 3c728d431e3d7bc43aec28ee6c69520d 269 PANTHER PTHR18866 117 269 2.2E-19 T 23-04-2016 SD28_RS00945 3c728d431e3d7bc43aec28ee6c69520d 269 PANTHER PTHR18866:SF74 117 269 2.2E-19 T 23-04-2016 SD28_RS00380 6b01b7d9a7c76d07b453ba3b3b8a9adf 258 Pfam PF03309 Type III pantothenate kinase 2 205 3.2E-58 T 23-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 SD28_RS00380 6b01b7d9a7c76d07b453ba3b3b8a9adf 258 SUPERFAMILY SSF53067 1 123 1.81E-26 T 23-04-2016 SD28_RS00380 6b01b7d9a7c76d07b453ba3b3b8a9adf 258 SUPERFAMILY SSF53067 126 251 5.18E-29 T 23-04-2016 SD28_RS00380 6b01b7d9a7c76d07b453ba3b3b8a9adf 258 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 256 29.776 T 23-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 SD28_RS00380 6b01b7d9a7c76d07b453ba3b3b8a9adf 258 Gene3D G3DSA:3.30.420.40 101 257 3.1E-40 T 23-04-2016 SD28_RS00380 6b01b7d9a7c76d07b453ba3b3b8a9adf 258 PANTHER PTHR34265 1 257 5.2E-50 T 23-04-2016 SD28_RS00380 6b01b7d9a7c76d07b453ba3b3b8a9adf 258 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 2 252 2.7E-51 T 23-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 SD28_RS03185 353f5d5bc5d31d4867d69ee267b18a8f 435 Pfam PF00999 Sodium/hydrogen exchanger family 10 414 2.6E-53 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 SD28_RS03185 353f5d5bc5d31d4867d69ee267b18a8f 435 PANTHER PTHR10110 3 415 1.8E-64 T 23-04-2016 IPR018422 Cation/H+ exchanger, CPA1 family GO:0006812|GO:0015299|GO:0016021 Reactome: REACT_15518 SD28_RS03185 353f5d5bc5d31d4867d69ee267b18a8f 435 PANTHER PTHR10110:SF86 3 415 1.8E-64 T 23-04-2016 SD28_RS01750 f792987a0d26bd5d75af3095de1178d4 285 Gene3D G3DSA:3.30.1700.10 131 283 4.7E-52 T 23-04-2016 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 SD28_RS01750 f792987a0d26bd5d75af3095de1178d4 285 SUPERFAMILY SSF54211 135 278 2.28E-44 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS01750 f792987a0d26bd5d75af3095de1178d4 285 Hamap MF_00388 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [lpxC]. 1 281 40.985 T 23-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 SD28_RS01750 f792987a0d26bd5d75af3095de1178d4 285 PANTHER PTHR33694:SF1 1 285 1.3E-101 T 23-04-2016 SD28_RS01750 f792987a0d26bd5d75af3095de1178d4 285 Gene3D G3DSA:3.30.230.20 1 127 3.0E-40 T 23-04-2016 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 SD28_RS01750 f792987a0d26bd5d75af3095de1178d4 285 SUPERFAMILY SSF54211 1 126 6.14E-35 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS01750 f792987a0d26bd5d75af3095de1178d4 285 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1 285 1.9E-99 T 23-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 SD28_RS01750 f792987a0d26bd5d75af3095de1178d4 285 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 3 276 1.1E-94 T 23-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 SD28_RS01750 f792987a0d26bd5d75af3095de1178d4 285 PANTHER PTHR33694 1 285 1.3E-101 T 23-04-2016 SD28_RS02490 20bf2538c235e50e40f711fa5b2f0339 71 PANTHER PTHR33280 1 70 5.9E-41 T 23-04-2016 SD28_RS02490 20bf2538c235e50e40f711fa5b2f0339 71 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 67 2.1E-38 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02490 20bf2538c235e50e40f711fa5b2f0339 71 SUPERFAMILY SSF143800 1 68 6.67E-29 T 23-04-2016 SD28_RS02490 20bf2538c235e50e40f711fa5b2f0339 71 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.4E-23 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02490 20bf2538c235e50e40f711fa5b2f0339 71 PRINTS PR01249 Ribosomal protein L31 signature 32 47 1.4E-23 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02490 20bf2538c235e50e40f711fa5b2f0339 71 PRINTS PR01249 Ribosomal protein L31 signature 47 65 1.4E-23 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02490 20bf2538c235e50e40f711fa5b2f0339 71 PANTHER PTHR33280:SF2 1 70 5.9E-41 T 23-04-2016 SD28_RS02490 20bf2538c235e50e40f711fa5b2f0339 71 Pfam PF01197 Ribosomal protein L31 1 66 3.3E-35 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02490 20bf2538c235e50e40f711fa5b2f0339 71 ProSitePatterns PS01143 Ribosomal protein L31 signature. 36 57 - T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02490 20bf2538c235e50e40f711fa5b2f0339 71 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 69 33.285 T 23-04-2016 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS05560 b5336d8a0e0113988ef86ec7766eeef3 211 Gene3D G3DSA:3.30.420.40 1 116 3.5E-29 T 23-04-2016 SD28_RS05560 b5336d8a0e0113988ef86ec7766eeef3 211 Gene3D G3DSA:3.30.420.40 117 162 4.2E-5 T 23-04-2016 SD28_RS05560 b5336d8a0e0113988ef86ec7766eeef3 211 SUPERFAMILY SSF53067 3 102 1.34E-24 T 23-04-2016 SD28_RS05560 b5336d8a0e0113988ef86ec7766eeef3 211 PANTHER PTHR11735:SF11 1 133 1.4E-35 T 23-04-2016 SD28_RS05560 b5336d8a0e0113988ef86ec7766eeef3 211 PANTHER PTHR11735 1 133 1.4E-35 T 23-04-2016 SD28_RS05560 b5336d8a0e0113988ef86ec7766eeef3 211 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 4 204 4.0E-40 T 23-04-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 SD28_RS05560 b5336d8a0e0113988ef86ec7766eeef3 211 Pfam PF00814 Glycoprotease family 32 169 1.3E-24 T 23-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 SD28_RS07555 65f707722afbeb9d11147eb4bc76a427 176 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 2 176 15.404 T 23-04-2016 IPR006008 Intracellular septation protein A GO:0016021 SD28_RS07555 65f707722afbeb9d11147eb4bc76a427 176 PANTHER PTHR36917 1 174 1.3E-46 T 23-04-2016 SD28_RS07555 65f707722afbeb9d11147eb4bc76a427 176 PANTHER PTHR36917:SF1 1 174 1.3E-46 T 23-04-2016 SD28_RS07555 65f707722afbeb9d11147eb4bc76a427 176 Pfam PF04279 Intracellular septation protein A 3 176 2.5E-52 T 23-04-2016 IPR006008 Intracellular septation protein A GO:0016021 SD28_RS01155 b88023ad5bdc974fed8ad762d87375dc 246 SUPERFAMILY SSF51395 27 239 1.61E-26 T 23-04-2016 SD28_RS01155 b88023ad5bdc974fed8ad762d87375dc 246 Pfam PF01180 Dihydroorotate dehydrogenase 29 239 8.3E-13 T 23-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 SD28_RS01155 b88023ad5bdc974fed8ad762d87375dc 246 Gene3D G3DSA:3.20.20.70 34 235 4.7E-22 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS01155 b88023ad5bdc974fed8ad762d87375dc 246 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 198 218 - T 23-04-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 SD28_RS05620 f232e47b48ba8d029d2274cce2987c17 663 Gene3D G3DSA:1.10.3290.10 232 303 3.3E-5 T 23-04-2016 IPR003812 Fido domain SD28_RS03875 a81d0a812f896ffe0c8c2d7f4a255e2b 225 Gene3D G3DSA:3.20.20.70 1 217 2.8E-85 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 SD28_RS03875 a81d0a812f896ffe0c8c2d7f4a255e2b 225 SUPERFAMILY SSF51366 4 218 2.26E-70 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 SD28_RS03875 a81d0a812f896ffe0c8c2d7f4a255e2b 225 PANTHER PTHR11749 2 224 1.9E-118 T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 SD28_RS03875 a81d0a812f896ffe0c8c2d7f4a255e2b 225 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 6 216 9.9E-90 T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 SD28_RS03875 a81d0a812f896ffe0c8c2d7f4a255e2b 225 PANTHER PTHR11749:SF7 2 224 1.9E-118 T 23-04-2016 SD28_RS03875 a81d0a812f896ffe0c8c2d7f4a255e2b 225 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 SD28_RS03875 a81d0a812f896ffe0c8c2d7f4a255e2b 225 PIRSF PIRSF001461 1 225 8.2E-94 T 23-04-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 SD28_RS03875 a81d0a812f896ffe0c8c2d7f4a255e2b 225 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 1.2E-79 T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 SD28_RS02665 5d6df9610166d1c985fa006040997e48 158 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.6E-5 T 23-04-2016 IPR020476 NUDIX hydrolase SD28_RS02665 5d6df9610166d1c985fa006040997e48 158 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.6E-5 T 23-04-2016 IPR020476 NUDIX hydrolase SD28_RS02665 5d6df9610166d1c985fa006040997e48 158 Pfam PF00293 NUDIX domain 7 128 2.8E-26 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 SD28_RS02665 5d6df9610166d1c985fa006040997e48 158 Gene3D G3DSA:3.90.79.10 7 151 5.7E-30 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 SD28_RS02665 5d6df9610166d1c985fa006040997e48 158 PANTHER PTHR23114 1 151 2.9E-40 T 23-04-2016 SD28_RS02665 5d6df9610166d1c985fa006040997e48 158 SUPERFAMILY SSF55811 6 151 6.63E-30 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 SD28_RS02665 5d6df9610166d1c985fa006040997e48 158 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 SD28_RS02665 5d6df9610166d1c985fa006040997e48 158 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 155 36.148 T 23-04-2016 IPR022927 RNA pyrophosphohydrolase RppH SD28_RS00420 a52fbaf2340735eb4b86f5fd00d8dd8f 373 SUPERFAMILY SSF81301 1 119 4.03E-30 T 23-04-2016 SD28_RS00420 a52fbaf2340735eb4b86f5fd00d8dd8f 373 Gene3D G3DSA:1.10.3090.10 121 303 3.5E-23 T 23-04-2016 SD28_RS00420 a52fbaf2340735eb4b86f5fd00d8dd8f 373 SUPERFAMILY SSF81891 120 280 2.88E-25 T 23-04-2016 SD28_RS00420 a52fbaf2340735eb4b86f5fd00d8dd8f 373 Pfam PF01743 Poly A polymerase head domain 3 122 6.5E-21 T 23-04-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 SD28_RS00420 a52fbaf2340735eb4b86f5fd00d8dd8f 373 Gene3D G3DSA:3.30.460.10 1 120 1.9E-30 T 23-04-2016 SD28_RS00420 a52fbaf2340735eb4b86f5fd00d8dd8f 373 PANTHER PTHR13734 4 273 1.7E-54 T 23-04-2016 SD28_RS00420 a52fbaf2340735eb4b86f5fd00d8dd8f 373 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 210 3.9E-8 T 23-04-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain SD28_RS04730 9b1b2fd39f5e32a169695b48f877ff7a 181 SUPERFAMILY SSF100950 1 180 4.33E-39 T 23-04-2016 SD28_RS04730 9b1b2fd39f5e32a169695b48f877ff7a 181 Gene3D G3DSA:3.40.50.10420 1 180 1.3E-37 T 23-04-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain SD28_RS04730 9b1b2fd39f5e32a169695b48f877ff7a 181 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 3 177 2.4E-37 T 23-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase SD28_RS04730 9b1b2fd39f5e32a169695b48f877ff7a 181 PIRSF PIRSF006806 1 180 2.9E-33 T 23-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase SD28_RS04730 9b1b2fd39f5e32a169695b48f877ff7a 181 PANTHER PTHR23407 1 181 1.5E-34 T 23-04-2016 SD28_RS04730 9b1b2fd39f5e32a169695b48f877ff7a 181 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 3 177 2.0E-27 T 23-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase SD28_RS04730 9b1b2fd39f5e32a169695b48f877ff7a 181 PANTHER PTHR23407:SF1 1 181 1.5E-34 T 23-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase SD28_RS01535 82a5ffc6f973348c55a171efefc95c30 402 PANTHER PTHR32195 1 358 3.9E-60 T 23-04-2016 SD28_RS01535 82a5ffc6f973348c55a171efefc95c30 402 PANTHER PTHR32195:SF17 1 358 3.9E-60 T 23-04-2016 SD28_RS01535 82a5ffc6f973348c55a171efefc95c30 402 Pfam PF03222 Tryptophan/tyrosine permease family 5 385 1.3E-77 T 23-04-2016 IPR018227 Tryptophan/tyrosine permease GO:0003333 SD28_RS01535 82a5ffc6f973348c55a171efefc95c30 402 PRINTS PR00166 Aromatic amino acid permease signature 181 203 4.5E-52 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01535 82a5ffc6f973348c55a171efefc95c30 402 PRINTS PR00166 Aromatic amino acid permease signature 82 102 4.5E-52 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01535 82a5ffc6f973348c55a171efefc95c30 402 PRINTS PR00166 Aromatic amino acid permease signature 147 167 4.5E-52 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01535 82a5ffc6f973348c55a171efefc95c30 402 PRINTS PR00166 Aromatic amino acid permease signature 220 239 4.5E-52 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01535 82a5ffc6f973348c55a171efefc95c30 402 PRINTS PR00166 Aromatic amino acid permease signature 10 33 4.5E-52 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01535 82a5ffc6f973348c55a171efefc95c30 402 PRINTS PR00166 Aromatic amino acid permease signature 340 359 4.5E-52 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01535 82a5ffc6f973348c55a171efefc95c30 402 PRINTS PR00166 Aromatic amino acid permease signature 37 56 4.5E-52 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01535 82a5ffc6f973348c55a171efefc95c30 402 PRINTS PR00166 Aromatic amino acid permease signature 319 337 4.5E-52 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS01535 82a5ffc6f973348c55a171efefc95c30 402 PRINTS PR00166 Aromatic amino acid permease signature 285 304 4.5E-52 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS05470 e364f71debb1a1b04c31294d79f5eb4e 393 Pfam PF07690 Major Facilitator Superfamily 12 333 5.1E-14 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS05470 e364f71debb1a1b04c31294d79f5eb4e 393 PANTHER PTHR24064 14 387 4.4E-13 T 23-04-2016 SD28_RS05470 e364f71debb1a1b04c31294d79f5eb4e 393 SUPERFAMILY SSF103473 3 391 2.75E-41 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS05470 e364f71debb1a1b04c31294d79f5eb4e 393 Gene3D G3DSA:1.20.1250.20 212 390 2.9E-5 T 23-04-2016 SD28_RS05470 e364f71debb1a1b04c31294d79f5eb4e 393 Gene3D G3DSA:1.20.1250.20 6 179 6.2E-19 T 23-04-2016 SD28_RS01900 bd08c1f734297bca3d53530f7866224a 650 PANTHER PTHR32305 362 593 8.3E-14 T 23-04-2016 SD28_RS01900 bd08c1f734297bca3d53530f7866224a 650 PANTHER PTHR32305:SF6 362 593 8.3E-14 T 23-04-2016 SD28_RS01900 bd08c1f734297bca3d53530f7866224a 650 Pfam PF05593 RHS Repeat 519 554 9.5E-5 T 23-04-2016 IPR031325 RHS repeat SD28_RS01900 bd08c1f734297bca3d53530f7866224a 650 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 457 496 7.4E-6 T 23-04-2016 IPR006530 YD repeat SD28_RS01900 bd08c1f734297bca3d53530f7866224a 650 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 519 552 1.0E-4 T 23-04-2016 IPR006530 YD repeat SD28_RS02505 e2d973c37e38be1916300ab0e075408d 296 PANTHER PTHR10264 1 296 2.6E-108 T 23-04-2016 IPR001972 Stomatin family GO:0016020 SD28_RS02505 e2d973c37e38be1916300ab0e075408d 296 Pfam PF01145 SPFH domain / Band 7 family 22 193 6.0E-28 T 23-04-2016 IPR001107 Band 7 domain SD28_RS02505 e2d973c37e38be1916300ab0e075408d 296 PANTHER PTHR10264:SF84 1 296 2.6E-108 T 23-04-2016 SD28_RS02505 e2d973c37e38be1916300ab0e075408d 296 SMART SM00244 17 176 6.9E-30 T 23-04-2016 IPR001107 Band 7 domain SD28_RS02505 e2d973c37e38be1916300ab0e075408d 296 SUPERFAMILY SSF117892 48 181 1.09E-23 T 23-04-2016 IPR001107 Band 7 domain SD28_RS05795 e672926dbbfb5611652b6efba0167402 308 Gene3D G3DSA:3.40.1500.10 3 307 4.0E-130 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS05795 e672926dbbfb5611652b6efba0167402 308 SUPERFAMILY SSF102886 3 307 3.27E-127 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS05795 e672926dbbfb5611652b6efba0167402 308 PANTHER PTHR10755 3 308 8.0E-171 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS05795 e672926dbbfb5611652b6efba0167402 308 PRINTS PR00073 Coprogen oxidase signature 268 294 1.7E-66 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS05795 e672926dbbfb5611652b6efba0167402 308 PRINTS PR00073 Coprogen oxidase signature 168 197 1.7E-66 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS05795 e672926dbbfb5611652b6efba0167402 308 PRINTS PR00073 Coprogen oxidase signature 31 47 1.7E-66 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS05795 e672926dbbfb5611652b6efba0167402 308 PRINTS PR00073 Coprogen oxidase signature 240 267 1.7E-66 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS05795 e672926dbbfb5611652b6efba0167402 308 PRINTS PR00073 Coprogen oxidase signature 96 120 1.7E-66 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS05795 e672926dbbfb5611652b6efba0167402 308 PRINTS PR00073 Coprogen oxidase signature 131 153 1.7E-66 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS05795 e672926dbbfb5611652b6efba0167402 308 PIRSF PIRSF000166 1 308 3.8E-130 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS05795 e672926dbbfb5611652b6efba0167402 308 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 172 196 - T 23-04-2016 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS05795 e672926dbbfb5611652b6efba0167402 308 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 2 283 50.48 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS05795 e672926dbbfb5611652b6efba0167402 308 Pfam PF01218 Coproporphyrinogen III oxidase 8 307 5.3E-126 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 SD28_RS04630 273c44c993760e050c9f367c4e9c6c6b 130 Gene3D G3DSA:3.40.630.30 1 116 2.0E-22 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase SD28_RS04630 273c44c993760e050c9f367c4e9c6c6b 130 PANTHER PTHR13355 10 129 2.0E-12 T 23-04-2016 SD28_RS04630 273c44c993760e050c9f367c4e9c6c6b 130 Pfam PF13673 Acetyltransferase (GNAT) domain 31 116 4.3E-13 T 23-04-2016 IPR000182 GNAT domain GO:0008080 SD28_RS04630 273c44c993760e050c9f367c4e9c6c6b 130 SUPERFAMILY SSF55729 1 115 1.25E-18 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase SD28_RS04630 273c44c993760e050c9f367c4e9c6c6b 130 PANTHER PTHR13355:SF5 10 129 2.0E-12 T 23-04-2016 SD28_RS00245 519884fa70adb9973053aa1d0ab18a68 414 Gene3D G3DSA:3.30.1330.60 61 176 7.1E-23 T 23-04-2016 IPR006665 OmpA-like domain SD28_RS00245 519884fa70adb9973053aa1d0ab18a68 414 PANTHER PTHR30128 64 176 7.1E-18 T 23-04-2016 SD28_RS00245 519884fa70adb9973053aa1d0ab18a68 414 Pfam PF00691 OmpA family 67 169 5.3E-15 T 23-04-2016 IPR006665 OmpA-like domain SD28_RS00245 519884fa70adb9973053aa1d0ab18a68 414 SUPERFAMILY SSF103088 62 176 5.23E-24 T 23-04-2016 IPR006665 OmpA-like domain SD28_RS02475 e940d3520498259146615d398bd0ec95 356 Gene3D G3DSA:1.25.40.10 193 275 1.2E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS02475 e940d3520498259146615d398bd0ec95 356 SUPERFAMILY SSF81901 33 272 8.72E-20 T 23-04-2016 SD28_RS02475 e940d3520498259146615d398bd0ec95 356 Pfam PF08238 Sel1 repeat 196 229 2.3E-5 T 23-04-2016 IPR006597 Sel1-like repeat SD28_RS02475 e940d3520498259146615d398bd0ec95 356 Pfam PF08238 Sel1 repeat 135 169 0.0024 T 23-04-2016 IPR006597 Sel1-like repeat SD28_RS02475 e940d3520498259146615d398bd0ec95 356 Pfam PF08238 Sel1 repeat 99 132 2.5E-4 T 23-04-2016 IPR006597 Sel1-like repeat SD28_RS02475 e940d3520498259146615d398bd0ec95 356 SMART SM00671 193 229 3.4E-6 T 23-04-2016 IPR006597 Sel1-like repeat SD28_RS02475 e940d3520498259146615d398bd0ec95 356 SMART SM00671 96 132 3.3E-4 T 23-04-2016 IPR006597 Sel1-like repeat SD28_RS02475 e940d3520498259146615d398bd0ec95 356 SMART SM00671 133 169 1.5E-4 T 23-04-2016 IPR006597 Sel1-like repeat SD28_RS02475 e940d3520498259146615d398bd0ec95 356 PANTHER PTHR11102 197 230 5.6E-17 T 23-04-2016 SD28_RS02475 e940d3520498259146615d398bd0ec95 356 PANTHER PTHR11102 45 173 5.6E-17 T 23-04-2016 SD28_RS02475 e940d3520498259146615d398bd0ec95 356 Gene3D G3DSA:1.25.40.10 29 173 1.3E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS06330 90875a74590cf99beab9c647f7eee8da 281 Gene3D G3DSA:3.40.30.10 133 242 3.2E-9 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS06330 90875a74590cf99beab9c647f7eee8da 281 SUPERFAMILY SSF52833 129 251 6.07E-8 T 23-04-2016 IPR012336 Thioredoxin-like fold SD28_RS04085 f390e8e6ed643656519e949c990f165e 244 PANTHER PTHR30027 1 239 3.7E-63 T 23-04-2016 SD28_RS04085 f390e8e6ed643656519e949c990f165e 244 Gene3D G3DSA:3.40.1280.10 16 240 6.9E-61 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal SD28_RS04085 f390e8e6ed643656519e949c990f165e 244 PIRSF PIRSF015601 3 244 2.6E-63 T 23-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS04085 f390e8e6ed643656519e949c990f165e 244 SUPERFAMILY SSF75217 75 240 3.79E-47 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases SD28_RS04085 f390e8e6ed643656519e949c990f165e 244 SUPERFAMILY SSF88697 4 72 5.47E-8 T 23-04-2016 IPR015947 PUA-like domain SD28_RS04085 f390e8e6ed643656519e949c990f165e 244 Pfam PF04452 RNA methyltransferase 19 238 5.2E-62 T 23-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS04085 f390e8e6ed643656519e949c990f165e 244 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 18 239 7.5E-61 T 23-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 SD28_RS04085 f390e8e6ed643656519e949c990f165e 244 PANTHER PTHR30027:SF3 1 239 3.7E-63 T 23-04-2016 SD28_RS04035 1ecf01544206ca17842cc71b60669190 389 Gene3D G3DSA:3.90.1150.10 264 383 3.0E-20 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS04035 1ecf01544206ca17842cc71b60669190 389 PANTHER PTHR13693 145 389 4.9E-32 T 23-04-2016 SD28_RS04035 1ecf01544206ca17842cc71b60669190 389 Pfam PF00155 Aminotransferase class I and II 144 381 1.8E-15 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SD28_RS04035 1ecf01544206ca17842cc71b60669190 389 PANTHER PTHR13693:SF53 145 389 4.9E-32 T 23-04-2016 SD28_RS04035 1ecf01544206ca17842cc71b60669190 389 SUPERFAMILY SSF53383 14 388 3.99E-43 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS04035 1ecf01544206ca17842cc71b60669190 389 Gene3D G3DSA:3.40.640.10 58 263 1.8E-26 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS03940 623fa2661d68992e1b82fca720e8d18a 190 Gene3D G3DSA:1.20.1550.10 19 92 2.2E-10 T 23-04-2016 IPR023380 Disulphide bond formation protein DsbB-like domain SD28_RS03940 623fa2661d68992e1b82fca720e8d18a 190 SUPERFAMILY SSF158442 20 125 1.7E-19 T 23-04-2016 SD28_RS03940 623fa2661d68992e1b82fca720e8d18a 190 Pfam PF02600 Disulfide bond formation protein DsbB 18 92 3.1E-12 T 23-04-2016 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 SD28_RS00280 48657852a25e3b143a33a4dc39ebb4dd 266 Pfam PF11685 Protein of unknown function (DUF3281) 2 206 9.8E-23 T 23-04-2016 IPR021699 Protein of unknown function DUF3281 SD28_RS03790 cefac5279ef348074fad6ff2c3cfa631 308 Gene3D G3DSA:1.10.287.890 201 283 1.7E-32 T 23-04-2016 SD28_RS03790 cefac5279ef348074fad6ff2c3cfa631 308 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 5 303 28.703 T 23-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 SD28_RS03790 cefac5279ef348074fad6ff2c3cfa631 308 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 8 290 1.1E-93 T 23-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 SD28_RS03790 cefac5279ef348074fad6ff2c3cfa631 308 SUPERFAMILY SSF52540 7 154 1.92E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03790 cefac5279ef348074fad6ff2c3cfa631 308 Gene3D G3DSA:3.40.50.300 2 171 2.3E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS03790 cefac5279ef348074fad6ff2c3cfa631 308 Pfam PF01715 IPP transferase 39 285 1.9E-78 T 23-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 SD28_RS03790 cefac5279ef348074fad6ff2c3cfa631 308 PANTHER PTHR11088 8 296 2.4E-91 T 23-04-2016 SD28_RS04625 c25da4e9d325b41dbc45e87082561307 383 SUPERFAMILY SSF69572 4 103 7.59E-5 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 SD28_RS04625 c25da4e9d325b41dbc45e87082561307 383 SUPERFAMILY SSF55347 129 280 4.45E-13 T 23-04-2016 SD28_RS04625 c25da4e9d325b41dbc45e87082561307 383 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 128 369 6.6E-11 T 23-04-2016 IPR032095 Saccharopine dehydrogenase, C-terminal SD28_RS05905 f78eb851518cb2372e4631cb09ec84d4 437 PIRSF PIRSF002808 5 436 9.6E-123 T 23-04-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 SD28_RS05905 f78eb851518cb2372e4631cb09ec84d4 437 SUPERFAMILY SSF103473 18 428 1.57E-65 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS05905 f78eb851518cb2372e4631cb09ec84d4 437 PANTHER PTHR11662 1 429 4.1E-152 T 23-04-2016 SD28_RS05905 f78eb851518cb2372e4631cb09ec84d4 437 PANTHER PTHR11662:SF141 1 429 4.1E-152 T 23-04-2016 SD28_RS05905 f78eb851518cb2372e4631cb09ec84d4 437 Gene3D G3DSA:1.20.1250.20 24 210 2.2E-38 T 23-04-2016 SD28_RS05905 f78eb851518cb2372e4631cb09ec84d4 437 Gene3D G3DSA:1.20.1250.20 241 426 2.5E-38 T 23-04-2016 SD28_RS05905 f78eb851518cb2372e4631cb09ec84d4 437 Pfam PF07690 Major Facilitator Superfamily 34 392 2.2E-39 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS00810 82872f0774714dd28d560c17a9461390 203 Gene3D G3DSA:1.20.120.80 23 201 1.9E-46 T 23-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 SD28_RS00810 82872f0774714dd28d560c17a9461390 203 SUPERFAMILY SSF81452 10 201 1.44E-55 T 23-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 SD28_RS00810 82872f0774714dd28d560c17a9461390 203 PANTHER PTHR11403 6 203 2.5E-90 T 23-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 SD28_RS00810 82872f0774714dd28d560c17a9461390 203 PANTHER PTHR11403:SF2 6 203 2.5E-90 T 23-04-2016 SD28_RS00810 82872f0774714dd28d560c17a9461390 203 Pfam PF00510 Cytochrome c oxidase subunit III 10 201 1.4E-13 T 23-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 SD28_RS00810 82872f0774714dd28d560c17a9461390 203 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 24 203 2.1E-80 T 23-04-2016 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 SD28_RS02685 1ab53fa40ccaaa036a213bacf34101de 195 Pfam PF01066 CDP-alcohol phosphatidyltransferase 28 90 2.0E-11 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 SD28_RS02685 1ab53fa40ccaaa036a213bacf34101de 195 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 68 90 - T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 SD28_RS07045 fc780a443e1f8afcd4c02f9daf1992b3 160 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 4 160 7.3E-46 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 SD28_RS07045 fc780a443e1f8afcd4c02f9daf1992b3 160 PANTHER PTHR23151 12 160 1.2E-34 T 23-04-2016 SD28_RS07045 fc780a443e1f8afcd4c02f9daf1992b3 160 Gene3D G3DSA:2.40.50.100 84 160 1.2E-32 T 23-04-2016 SD28_RS07045 fc780a443e1f8afcd4c02f9daf1992b3 160 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 121 134 3.2E-17 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 SD28_RS07045 fc780a443e1f8afcd4c02f9daf1992b3 160 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 89 102 3.2E-17 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 SD28_RS07045 fc780a443e1f8afcd4c02f9daf1992b3 160 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 106 120 3.2E-17 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 SD28_RS07045 fc780a443e1f8afcd4c02f9daf1992b3 160 SUPERFAMILY SSF51230 85 160 2.09E-25 T 23-04-2016 IPR011053 Single hybrid motif SD28_RS07045 fc780a443e1f8afcd4c02f9daf1992b3 160 Pfam PF00364 Biotin-requiring enzyme 86 159 2.5E-25 T 23-04-2016 IPR000089 Biotin/lipoyl attachment SD28_RS00920 f014c4538ad9b83125cbecb59a0111c2 331 Gene3D G3DSA:1.10.10.10 12 89 2.6E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS00920 f014c4538ad9b83125cbecb59a0111c2 331 SUPERFAMILY SSF46785 14 92 3.95E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS02850 eaaf5c3984679b19c539e896a7c50139 264 Pfam PF04116 Fatty acid hydroxylase superfamily 89 225 2.8E-26 T 23-04-2016 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 SD28_RS02850 eaaf5c3984679b19c539e896a7c50139 264 PANTHER PTHR11863 6 263 1.1E-30 T 23-04-2016 SD28_RS02850 eaaf5c3984679b19c539e896a7c50139 264 PANTHER PTHR11863:SF2 6 263 1.1E-30 T 23-04-2016 SD28_RS04480 40ebf21ba5b66a76c48506c8258db756 266 SMART SM01150 4 263 1.8E-85 T 23-04-2016 IPR009770 Domain of unknown function DUF1338 SD28_RS04480 40ebf21ba5b66a76c48506c8258db756 266 PANTHER PTHR31136:SF2 5 263 7.8E-80 T 23-04-2016 SD28_RS04480 40ebf21ba5b66a76c48506c8258db756 266 Pfam PF07063 Domain of unknown function (DUF1338) 5 262 4.5E-40 T 23-04-2016 IPR009770 Domain of unknown function DUF1338 SD28_RS04480 40ebf21ba5b66a76c48506c8258db756 266 PANTHER PTHR31136 5 263 7.8E-80 T 23-04-2016 SD28_RS03110 303db92dd1b223c6b1e9540aa6352416 182 Gene3D G3DSA:2.30.30.330 6 176 7.1E-20 T 23-04-2016 SD28_RS03110 303db92dd1b223c6b1e9540aa6352416 182 Pfam PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family 7 138 1.1E-10 T 23-04-2016 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SD28_RS03110 303db92dd1b223c6b1e9540aa6352416 182 SUPERFAMILY SSF54001 7 179 1.57E-24 T 23-04-2016 SD28_RS05605 bce74ba99f5c39f5abb39fb5ac1a25f2 157 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 39 147 4.1E-34 T 23-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 SD28_RS05605 bce74ba99f5c39f5abb39fb5ac1a25f2 157 PANTHER PTHR22881 11 157 4.8E-36 T 23-04-2016 SD28_RS05605 bce74ba99f5c39f5abb39fb5ac1a25f2 157 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 3 151 22.192 T 23-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 SD28_RS05605 bce74ba99f5c39f5abb39fb5ac1a25f2 157 Pfam PF02130 Uncharacterized protein family UPF0054 21 147 7.8E-35 T 23-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 SD28_RS05605 bce74ba99f5c39f5abb39fb5ac1a25f2 157 Gene3D G3DSA:3.40.390.30 8 156 2.0E-44 T 23-04-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 SD28_RS05605 bce74ba99f5c39f5abb39fb5ac1a25f2 157 SUPERFAMILY SSF55486 8 154 5.62E-42 T 23-04-2016 SD28_RS04340 2ad197f14915335c86c29141d48c538d 199 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 11 186 2.1E-23 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 SD28_RS04340 2ad197f14915335c86c29141d48c538d 199 Gene3D G3DSA:3.90.850.10 8 187 4.4E-43 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 SD28_RS04340 2ad197f14915335c86c29141d48c538d 199 PANTHER PTHR11820 10 189 7.7E-49 T 23-04-2016 SD28_RS04340 2ad197f14915335c86c29141d48c538d 199 SUPERFAMILY SSF56529 8 187 1.44E-41 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 SD28_RS06950 442f1c5d4fda44e556e1d8947c3759bf 253 PIRSF PIRSF000851 1 253 2.9E-73 T 23-04-2016 IPR026027 Phosphatidylcholine synthase Pcs KEGG: 00564+2.7.8.24|MetaCyc: PWY-6826 SD28_RS00115 10999ee54f9202cfbfa2573cef5cdf26 295 PANTHER PTHR30126:SF11 3 293 4.9E-83 T 23-04-2016 SD28_RS00115 10999ee54f9202cfbfa2573cef5cdf26 295 SUPERFAMILY SSF46785 1 112 4.52E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS00115 10999ee54f9202cfbfa2573cef5cdf26 295 Pfam PF03466 LysR substrate binding domain 89 292 2.5E-36 T 23-04-2016 IPR005119 LysR, substrate-binding SD28_RS00115 10999ee54f9202cfbfa2573cef5cdf26 295 Gene3D G3DSA:3.40.190.10 89 229 5.3E-30 T 23-04-2016 SD28_RS00115 10999ee54f9202cfbfa2573cef5cdf26 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 3.0E-15 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SD28_RS00115 10999ee54f9202cfbfa2573cef5cdf26 295 PANTHER PTHR30126 3 293 4.9E-83 T 23-04-2016 SD28_RS00115 10999ee54f9202cfbfa2573cef5cdf26 295 SUPERFAMILY SSF53850 89 292 3.36E-34 T 23-04-2016 SD28_RS00115 10999ee54f9202cfbfa2573cef5cdf26 295 Gene3D G3DSA:1.10.10.10 2 81 1.8E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS02165 60ae00a5cf1ccfcb2e1e37fc2ef090e7 226 SMART SM00382 26 217 1.1E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain SD28_RS02165 60ae00a5cf1ccfcb2e1e37fc2ef090e7 226 PANTHER PTHR24220 3 196 1.2E-45 T 23-04-2016 SD28_RS02165 60ae00a5cf1ccfcb2e1e37fc2ef090e7 226 Pfam PF00005 ABC transporter 19 160 5.1E-24 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SD28_RS02165 60ae00a5cf1ccfcb2e1e37fc2ef090e7 226 Gene3D G3DSA:3.40.50.300 1 214 2.4E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02165 60ae00a5cf1ccfcb2e1e37fc2ef090e7 226 SUPERFAMILY SSF52540 2 216 1.17E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00065 f36b13328cab3d67c374b06ec526cb9c 121 PANTHER PTHR12526:SF387 14 120 6.0E-26 T 23-04-2016 SD28_RS00065 f36b13328cab3d67c374b06ec526cb9c 121 PANTHER PTHR12526 14 120 6.0E-26 T 23-04-2016 SD28_RS00065 f36b13328cab3d67c374b06ec526cb9c 121 Pfam PF01050 Mannose-6-phosphate isomerase 10 116 4.9E-40 T 23-04-2016 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 SD28_RS00065 f36b13328cab3d67c374b06ec526cb9c 121 SUPERFAMILY SSF51182 6 120 6.01E-30 T 23-04-2016 IPR011051 RmlC-like cupin domain SD28_RS00065 f36b13328cab3d67c374b06ec526cb9c 121 Gene3D G3DSA:2.60.120.10 11 120 5.5E-29 T 23-04-2016 IPR014710 RmlC-like jelly roll fold SD28_RS07800 52d63f9e73a24bbd00e9f96092ad3950 92 Pfam PF13358 DDE superfamily endonuclease 2 60 1.8E-13 T 23-04-2016 SD28_RS03500 78ce2f21769a423e05b36d90a5460466 255 PANTHER PTHR36122 39 250 7.0E-28 T 23-04-2016 SD28_RS03500 78ce2f21769a423e05b36d90a5460466 255 Pfam PF04973 Nicotinamide mononucleotide transporter 60 249 2.5E-39 T 23-04-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 SD28_RS03500 78ce2f21769a423e05b36d90a5460466 255 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 61 250 2.2E-38 T 23-04-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 SD28_RS03500 78ce2f21769a423e05b36d90a5460466 255 PANTHER PTHR36122:SF2 39 250 7.0E-28 T 23-04-2016 SD28_RS01470 df7453c1adcce8215aad765af72dcff5 673 PANTHER PTHR30619 68 533 1.6E-58 T 23-04-2016 SD28_RS01470 df7453c1adcce8215aad765af72dcff5 673 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 180 360 1.8E-27 T 23-04-2016 IPR004477 ComEC/Rec2-related protein SD28_RS01470 df7453c1adcce8215aad765af72dcff5 673 PANTHER PTHR30619:SF2 68 533 1.6E-58 T 23-04-2016 SD28_RS01470 df7453c1adcce8215aad765af72dcff5 673 Pfam PF13567 Domain of unknown function (DUF4131) 13 116 4.4E-11 T 23-04-2016 IPR025405 Domain of unknown function DUF4131 SD28_RS01470 df7453c1adcce8215aad765af72dcff5 673 Pfam PF03772 Competence protein 161 424 6.0E-50 T 23-04-2016 IPR004477 ComEC/Rec2-related protein SD28_RS02860 a2147a26d82d56aee2369806347dd7f3 255 SUPERFAMILY SSF51556 2 254 2.43E-86 T 23-04-2016 IPR032466 Metal-dependent hydrolase SD28_RS02860 a2147a26d82d56aee2369806347dd7f3 255 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 23-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 SD28_RS02860 a2147a26d82d56aee2369806347dd7f3 255 Pfam PF01026 TatD related DNase 3 254 1.5E-82 T 23-04-2016 IPR001130 TatD family GO:0016788 SD28_RS02860 a2147a26d82d56aee2369806347dd7f3 255 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 254 8.9E-90 T 23-04-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 SD28_RS02860 a2147a26d82d56aee2369806347dd7f3 255 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 190 206 - T 23-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 SD28_RS02860 a2147a26d82d56aee2369806347dd7f3 255 PIRSF PIRSF005902 1 255 1.1E-83 T 23-04-2016 IPR001130 TatD family GO:0016788 SD28_RS02860 a2147a26d82d56aee2369806347dd7f3 255 PANTHER PTHR10060:SF20 1 254 5.9E-116 T 23-04-2016 SD28_RS02860 a2147a26d82d56aee2369806347dd7f3 255 Gene3D G3DSA:3.20.20.140 1 254 3.8E-88 T 23-04-2016 SD28_RS02860 a2147a26d82d56aee2369806347dd7f3 255 PANTHER PTHR10060 1 254 5.9E-116 T 23-04-2016 IPR001130 TatD family GO:0016788 SD28_RS01765 f6b45d078b3fa918f228104779ac5949 518 Gene3D G3DSA:3.30.20.10 254 298 2.4E-9 T 23-04-2016 SD28_RS01765 f6b45d078b3fa918f228104779ac5949 518 SUPERFAMILY SSF53955 165 300 9.84E-19 T 23-04-2016 IPR023346 Lysozyme-like domain SD28_RS01765 f6b45d078b3fa918f228104779ac5949 518 Pfam PF00182 Chitinase class I 170 298 1.3E-8 T 23-04-2016 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 SD28_RS01765 f6b45d078b3fa918f228104779ac5949 518 Pfam PF00182 Chitinase class I 386 421 1.1E-5 T 23-04-2016 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 SD28_RS01765 f6b45d078b3fa918f228104779ac5949 518 PANTHER PTHR22595 184 209 1.9E-14 T 23-04-2016 SD28_RS01765 f6b45d078b3fa918f228104779ac5949 518 PANTHER PTHR22595 386 427 1.9E-14 T 23-04-2016 SD28_RS01765 f6b45d078b3fa918f228104779ac5949 518 PANTHER PTHR22595 240 306 1.9E-14 T 23-04-2016 SD28_RS01765 f6b45d078b3fa918f228104779ac5949 518 Gene3D G3DSA:1.10.530.10 163 212 8.2E-19 T 23-04-2016 SD28_RS01765 f6b45d078b3fa918f228104779ac5949 518 Gene3D G3DSA:1.10.530.10 338 431 8.2E-19 T 23-04-2016 SD28_RS02710 105c4a632deb34f5c34ffdd801a8b5d5 233 Pfam PF04352 ProQ/FINO family 105 208 6.0E-21 T 23-04-2016 IPR016103 ProQ/FinO domain SD28_RS02710 105c4a632deb34f5c34ffdd801a8b5d5 233 SMART SM00945 99 214 1.5E-34 T 23-04-2016 IPR016103 ProQ/FinO domain SD28_RS02710 105c4a632deb34f5c34ffdd801a8b5d5 233 SUPERFAMILY SSF48657 101 204 2.49E-23 T 23-04-2016 IPR016103 ProQ/FinO domain SD28_RS02710 105c4a632deb34f5c34ffdd801a8b5d5 233 Gene3D G3DSA:1.10.1710.10 97 210 2.4E-23 T 23-04-2016 IPR016103 ProQ/FinO domain SD28_RS00640 ec111e9ae3a8ba2ff7ab55c9b84eac85 221 PANTHER PTHR24006 61 217 2.2E-15 T 23-04-2016 SD28_RS00640 ec111e9ae3a8ba2ff7ab55c9b84eac85 221 Gene3D G3DSA:3.80.10.10 61 217 4.2E-26 T 23-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like SD28_RS00640 ec111e9ae3a8ba2ff7ab55c9b84eac85 221 Pfam PF13855 Leucine rich repeat 106 165 4.0E-7 T 23-04-2016 IPR001611 Leucine-rich repeat GO:0005515 SD28_RS00640 ec111e9ae3a8ba2ff7ab55c9b84eac85 221 SUPERFAMILY SSF52047 61 212 6.67E-24 T 23-04-2016 SD28_RS00640 ec111e9ae3a8ba2ff7ab55c9b84eac85 221 Pfam PF13516 Leucine Rich repeat 62 78 0.016 T 23-04-2016 IPR001611 Leucine-rich repeat GO:0005515 SD28_RS00640 ec111e9ae3a8ba2ff7ab55c9b84eac85 221 Pfam PF13516 Leucine Rich repeat 82 102 0.25 T 23-04-2016 IPR001611 Leucine-rich repeat GO:0005515 SD28_RS01875 5e1d596dff5b6fbfb474f911695a6aea 572 Pfam PF04183 IucA / IucC family 133 359 1.7E-41 T 23-04-2016 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0015343|GO:0019290 SD28_RS01875 5e1d596dff5b6fbfb474f911695a6aea 572 PANTHER PTHR34384 5 571 3.3E-108 T 23-04-2016 SD28_RS01875 5e1d596dff5b6fbfb474f911695a6aea 572 Pfam PF06276 Ferric iron reductase FhuF-like transporter 392 549 4.6E-26 T 23-04-2016 IPR022770 Ferric iron reductase FhuF domain SD28_RS01875 5e1d596dff5b6fbfb474f911695a6aea 572 PANTHER PTHR34384:SF4 5 571 3.3E-108 T 23-04-2016 SD28_RS05305 fdf57d6290d4493c75771b260e5038cb 397 Gene3D G3DSA:2.30.30.60 207 257 1.3E-9 T 23-04-2016 SD28_RS05305 fdf57d6290d4493c75771b260e5038cb 397 PANTHER PTHR30414:SF0 1 390 3.0E-127 T 23-04-2016 IPR030192 Miniconductance mechanosensitive channel YbdG GO:0008381|GO:0016021|GO:0071470 SD28_RS05305 fdf57d6290d4493c75771b260e5038cb 397 SUPERFAMILY SSF50182 190 257 1.28E-10 T 23-04-2016 IPR010920 LSM domain SD28_RS05305 fdf57d6290d4493c75771b260e5038cb 397 Pfam PF00924 Mechanosensitive ion channel 147 375 4.3E-45 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 SD28_RS05305 fdf57d6290d4493c75771b260e5038cb 397 PANTHER PTHR30414 1 390 3.0E-127 T 23-04-2016 SD28_RS06740 5655d403bb0881ce0100361ac89a023f 435 PANTHER PTHR11986 37 306 9.7E-90 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SD28_RS06740 5655d403bb0881ce0100361ac89a023f 435 Gene3D G3DSA:3.40.640.10 76 314 2.5E-44 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 SD28_RS06740 5655d403bb0881ce0100361ac89a023f 435 PANTHER PTHR11986:SF83 37 306 9.7E-90 T 23-04-2016 SD28_RS06740 5655d403bb0881ce0100361ac89a023f 435 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 228 264 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SD28_RS06740 5655d403bb0881ce0100361ac89a023f 435 Pfam PF00202 Aminotransferase class-III 39 347 1.4E-41 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SD28_RS06740 5655d403bb0881ce0100361ac89a023f 435 Gene3D G3DSA:3.90.1150.10 319 408 2.3E-18 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS06740 5655d403bb0881ce0100361ac89a023f 435 Gene3D G3DSA:3.90.1150.10 4 74 2.3E-18 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 SD28_RS06740 5655d403bb0881ce0100361ac89a023f 435 SUPERFAMILY SSF53383 5 408 2.6E-74 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase SD28_RS06880 7aceafe72e766add2d948e6822aede63 259 Pfam PF07103 Protein of unknown function (DUF1365) 8 244 4.2E-63 T 23-04-2016 IPR010775 Protein of unknown function DUF1365 SD28_RS06880 7aceafe72e766add2d948e6822aede63 259 PANTHER PTHR33973 11 257 1.1E-36 T 23-04-2016 SD28_RS05790 8d000f609278cbccbcfe0f5288425bd0 111 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 5.1E-29 T 23-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS05790 8d000f609278cbccbcfe0f5288425bd0 111 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 20.721 T 23-04-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS05790 8d000f609278cbccbcfe0f5288425bd0 111 SUPERFAMILY SSF54995 1 103 4.58E-34 T 23-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS05790 8d000f609278cbccbcfe0f5288425bd0 111 PANTHER PTHR21011 1 109 1.2E-29 T 23-04-2016 SD28_RS05790 8d000f609278cbccbcfe0f5288425bd0 111 PANTHER PTHR21011:SF1 1 109 1.2E-29 T 23-04-2016 SD28_RS05790 8d000f609278cbccbcfe0f5288425bd0 111 Gene3D G3DSA:3.30.70.60 1 104 5.4E-38 T 23-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 SD28_RS05790 8d000f609278cbccbcfe0f5288425bd0 111 Pfam PF01250 Ribosomal protein S6 3 90 5.0E-26 T 23-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 SD28_RS00655 0f4b42967ae253ba165227e9edd886b4 77 Gene3D G3DSA:3.30.300.90 1 76 3.4E-18 T 23-04-2016 IPR002634 BolA protein SD28_RS00655 0f4b42967ae253ba165227e9edd886b4 77 PIRSF PIRSF003113 1 77 5.0E-17 T 23-04-2016 IPR002634 BolA protein SD28_RS00655 0f4b42967ae253ba165227e9edd886b4 77 Pfam PF01722 BolA-like protein 8 76 7.8E-11 T 23-04-2016 IPR002634 BolA protein SD28_RS00655 0f4b42967ae253ba165227e9edd886b4 77 SUPERFAMILY SSF82657 1 76 1.02E-17 T 23-04-2016 IPR002634 BolA protein SD28_RS05140 850f20a62d3d5e09d18cb4bda9b11e45 551 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 3 334 5.9E-81 T 23-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 SD28_RS05140 850f20a62d3d5e09d18cb4bda9b11e45 551 PANTHER PTHR30480:SF5 1 517 8.7E-107 T 23-04-2016 SD28_RS05140 850f20a62d3d5e09d18cb4bda9b11e45 551 SUPERFAMILY SSF51445 30 350 1.16E-76 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily SD28_RS05140 850f20a62d3d5e09d18cb4bda9b11e45 551 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 261 278 - T 23-04-2016 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 SD28_RS05140 850f20a62d3d5e09d18cb4bda9b11e45 551 Gene3D G3DSA:3.20.20.300 8 351 1.2E-90 T 23-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 SD28_RS05140 850f20a62d3d5e09d18cb4bda9b11e45 551 PANTHER PTHR30480 1 517 8.7E-107 T 23-04-2016 SD28_RS04575 cf6bda8c87625ec111b53cc8f5591f9f 62 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 25.598 T 23-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 SD28_RS04575 cf6bda8c87625ec111b53cc8f5591f9f 62 PANTHER PTHR33505 1 61 5.7E-19 T 23-04-2016 SD28_RS04575 cf6bda8c87625ec111b53cc8f5591f9f 62 SUPERFAMILY SSF158997 2 57 5.76E-20 T 23-04-2016 SD28_RS04575 cf6bda8c87625ec111b53cc8f5591f9f 62 Gene3D G3DSA:2.20.25.10 8 60 7.7E-25 T 23-04-2016 SD28_RS04575 cf6bda8c87625ec111b53cc8f5591f9f 62 PANTHER PTHR33505:SF2 1 61 5.7E-19 T 23-04-2016 SD28_RS04575 cf6bda8c87625ec111b53cc8f5591f9f 62 Pfam PF03966 Trm112p-like protein 3 40 3.6E-9 T 23-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 SD28_RS05765 ff385f9dd4678ea95294cca43e4ad0bf 298 Pfam PF12895 Anaphase-promoting complex, cyclosome, subunit 3 157 237 6.5E-8 T 23-04-2016 SD28_RS05765 ff385f9dd4678ea95294cca43e4ad0bf 298 Gene3D G3DSA:1.25.40.10 67 238 2.5E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS05765 ff385f9dd4678ea95294cca43e4ad0bf 298 SUPERFAMILY SSF48452 112 237 6.07E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS06715 2ceb1c5197b8c2f79ef40f9ed3f6e936 206 Gene3D G3DSA:2.160.10.10 53 204 7.3E-41 T 23-04-2016 SD28_RS06715 2ceb1c5197b8c2f79ef40f9ed3f6e936 206 PANTHER PTHR23416 47 206 5.6E-33 T 23-04-2016 SD28_RS06715 2ceb1c5197b8c2f79ef40f9ed3f6e936 206 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 153 187 2.7E-11 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS06715 2ceb1c5197b8c2f79ef40f9ed3f6e936 206 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 87 118 9.6E-7 T 23-04-2016 IPR001451 Hexapeptide repeat SD28_RS06715 2ceb1c5197b8c2f79ef40f9ed3f6e936 206 SUPERFAMILY SSF51161 42 203 2.09E-36 T 23-04-2016 IPR011004 Trimeric LpxA-like SD28_RS00490 dede662b0af3ef76d99449ef64d9a1f2 458 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 434 5.6E-151 T 23-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 SD28_RS00490 dede662b0af3ef76d99449ef64d9a1f2 458 PIRSF PIRSF006446 4 456 7.3E-160 T 23-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 SD28_RS00490 dede662b0af3ef76d99449ef64d9a1f2 458 PANTHER PTHR30365:SF8 1 453 2.9E-192 T 23-04-2016 SD28_RS00490 dede662b0af3ef76d99449ef64d9a1f2 458 PANTHER PTHR30365 1 453 2.9E-192 T 23-04-2016 SD28_RS02315 a2a29f6dfa02f2596ac307fab61cba12 207 Pfam PF00573 Ribosomal protein L4/L1 family 16 205 2.8E-63 T 23-04-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 SD28_RS02315 a2a29f6dfa02f2596ac307fab61cba12 207 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 204 2.2E-74 T 23-04-2016 IPR013005 50S ribosomal protein uL4 SD28_RS02315 a2a29f6dfa02f2596ac307fab61cba12 207 SUPERFAMILY SSF52166 2 206 2.75E-71 T 23-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 SD28_RS02315 a2a29f6dfa02f2596ac307fab61cba12 207 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 9 207 33.225 T 23-04-2016 IPR013005 50S ribosomal protein uL4 SD28_RS02315 a2a29f6dfa02f2596ac307fab61cba12 207 Gene3D G3DSA:3.40.1370.10 57 206 2.0E-54 T 23-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 SD28_RS02315 a2a29f6dfa02f2596ac307fab61cba12 207 PANTHER PTHR10746 1 207 2.2E-84 T 23-04-2016 IPR013005 50S ribosomal protein uL4 SD28_RS02095 5687066db3e3dbea6ceab26c5ced2ea3 544 PANTHER PTHR40940 1 424 4.0E-45 T 23-04-2016 SD28_RS02095 5687066db3e3dbea6ceab26c5ced2ea3 544 PANTHER PTHR40940:SF1 1 424 4.0E-45 T 23-04-2016 SD28_RS02095 5687066db3e3dbea6ceab26c5ced2ea3 544 Pfam PF13584 Oxygen tolerance 21 460 8.1E-84 T 23-04-2016 IPR025738 Aerotolerance-related protein BatD SD28_RS02655 3982097d5d105f6209276c9317edede4 292 Gene3D G3DSA:1.10.443.10 109 285 1.3E-57 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 SD28_RS02655 3982097d5d105f6209276c9317edede4 292 PANTHER PTHR30349 5 291 7.1E-108 T 23-04-2016 SD28_RS02655 3982097d5d105f6209276c9317edede4 292 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 1 292 55.016 T 23-04-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 SD28_RS02655 3982097d5d105f6209276c9317edede4 292 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 5 82 4.5E-19 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 SD28_RS02655 3982097d5d105f6209276c9317edede4 292 PANTHER PTHR30349:SF5 5 291 7.1E-108 T 23-04-2016 SD28_RS02655 3982097d5d105f6209276c9317edede4 292 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 1 292 32.409 T 23-04-2016 IPR023009 Tyrosine recombinase XerC/XerD SD28_RS02655 3982097d5d105f6209276c9317edede4 292 SUPERFAMILY SSF56349 5 285 5.89E-61 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 SD28_RS02655 3982097d5d105f6209276c9317edede4 292 Pfam PF00589 Phage integrase family 108 277 1.1E-51 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 SD28_RS02655 3982097d5d105f6209276c9317edede4 292 Gene3D G3DSA:1.10.150.130 4 94 2.5E-21 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal SD28_RS02655 3982097d5d105f6209276c9317edede4 292 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 7 291 3.4E-113 T 23-04-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 SD28_RS06460 d5322dcaebe161d19a33b987fa663848 109 Gene3D G3DSA:1.10.287.1080 1 85 2.2E-15 T 23-04-2016 SD28_RS06460 d5322dcaebe161d19a33b987fa663848 109 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 27 91 1.2E-8 T 23-04-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core SD28_RS06460 d5322dcaebe161d19a33b987fa663848 109 SUPERFAMILY SSF101386 4 92 2.4E-15 T 23-04-2016 SD28_RS01485 964be08dfcfd24c0fe57344a585882ab 447 Gene3D G3DSA:1.10.3080.10 12 430 1.6E-94 T 23-04-2016 IPR014743 Chloride channel, core GO:0005216|GO:0055085 SD28_RS01485 964be08dfcfd24c0fe57344a585882ab 447 Pfam PF00654 Voltage gated chloride channel 74 414 1.7E-89 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 SD28_RS01485 964be08dfcfd24c0fe57344a585882ab 447 PRINTS PR00762 Chloride channel signature 384 403 2.28E-22 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 SD28_RS01485 964be08dfcfd24c0fe57344a585882ab 447 PRINTS PR00762 Chloride channel signature 165 184 2.28E-22 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 SD28_RS01485 964be08dfcfd24c0fe57344a585882ab 447 PRINTS PR00762 Chloride channel signature 86 103 2.28E-22 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 SD28_RS01485 964be08dfcfd24c0fe57344a585882ab 447 PRINTS PR00762 Chloride channel signature 331 351 2.28E-22 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 SD28_RS01485 964be08dfcfd24c0fe57344a585882ab 447 PRINTS PR00762 Chloride channel signature 366 382 2.28E-22 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 SD28_RS01485 964be08dfcfd24c0fe57344a585882ab 447 PANTHER PTHR11689:SF96 25 436 1.5E-112 T 23-04-2016 SD28_RS01485 964be08dfcfd24c0fe57344a585882ab 447 SUPERFAMILY SSF81340 7 430 8.37E-104 T 23-04-2016 IPR014743 Chloride channel, core GO:0005216|GO:0055085 SD28_RS01485 964be08dfcfd24c0fe57344a585882ab 447 PANTHER PTHR11689 25 436 1.5E-112 T 23-04-2016 SD28_RS06995 9b4b8b356e6f9632a49020c201a1b9b6 449 Gene3D G3DSA:3.60.110.10 213 274 1.4E-5 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 SD28_RS06995 9b4b8b356e6f9632a49020c201a1b9b6 449 Gene3D G3DSA:3.60.110.10 23 107 1.4E-5 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 SD28_RS02915 59a87c65c6e18a754defe55e2c64216e 229 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 16 229 30.145 T 23-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 SD28_RS02915 59a87c65c6e18a754defe55e2c64216e 229 PANTHER PTHR23417:SF14 2 229 5.1E-68 T 23-04-2016 SD28_RS02915 59a87c65c6e18a754defe55e2c64216e 229 SUPERFAMILY SSF53335 42 227 1.44E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS02915 59a87c65c6e18a754defe55e2c64216e 229 Pfam PF02390 Putative methyltransferase 57 222 5.4E-56 T 23-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 SD28_RS02915 59a87c65c6e18a754defe55e2c64216e 229 Gene3D G3DSA:3.40.50.150 25 200 4.2E-13 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS02915 59a87c65c6e18a754defe55e2c64216e 229 PANTHER PTHR23417 2 229 5.1E-68 T 23-04-2016 SD28_RS02915 59a87c65c6e18a754defe55e2c64216e 229 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 44 229 7.8E-59 T 23-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 SD28_RS02200 53d48fd20e923025eeb091685c4d61a7 717 Hamap MF_00983 Probable primosomal protein N' [priA]. 5 716 21.191 T 23-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 SD28_RS02200 53d48fd20e923025eeb091685c4d61a7 717 PANTHER PTHR30580 2 717 2.1E-197 T 23-04-2016 SD28_RS02200 53d48fd20e923025eeb091685c4d61a7 717 SMART SM00487 183 378 1.8E-20 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain SD28_RS02200 53d48fd20e923025eeb091685c4d61a7 717 Gene3D G3DSA:3.40.50.300 175 369 1.7E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02200 53d48fd20e923025eeb091685c4d61a7 717 Gene3D G3DSA:3.40.50.300 482 621 9.8E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02200 53d48fd20e923025eeb091685c4d61a7 717 Gene3D G3DSA:3.40.50.300 396 417 9.8E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02200 53d48fd20e923025eeb091685c4d61a7 717 TIGRFAM TIGR00595 priA: primosomal protein N' 208 714 3.5E-159 T 23-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 SD28_RS02200 53d48fd20e923025eeb091685c4d61a7 717 SUPERFAMILY SSF52540 184 367 3.86E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02200 53d48fd20e923025eeb091685c4d61a7 717 SUPERFAMILY SSF52540 450 605 5.09E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS02200 53d48fd20e923025eeb091685c4d61a7 717 Pfam PF00271 Helicase conserved C-terminal domain 516 577 2.4E-4 T 23-04-2016 IPR001650 Helicase, C-terminal SD28_RS02200 53d48fd20e923025eeb091685c4d61a7 717 Pfam PF00270 DEAD/DEAH box helicase 191 351 7.0E-17 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SD28_RS05835 c98ec797d5f2969cae79c97cc4d1a7c6 203 SUPERFAMILY SSF53955 13 186 2.44E-23 T 23-04-2016 IPR023346 Lysozyme-like domain SD28_RS05835 c98ec797d5f2969cae79c97cc4d1a7c6 203 Pfam PF01464 Transglycosylase SLT domain 50 168 5.3E-6 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 SD28_RS05835 c98ec797d5f2969cae79c97cc4d1a7c6 203 Gene3D G3DSA:1.10.530.10 42 189 2.1E-11 T 23-04-2016 SD28_RS00830 3f5d8ff096bf1566e29330723e027fa5 114 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 74 1.0E-23 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 SD28_RS00830 3f5d8ff096bf1566e29330723e027fa5 114 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 9.6E-31 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 SD28_RS00830 3f5d8ff096bf1566e29330723e027fa5 114 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 9.6E-31 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 SD28_RS00830 3f5d8ff096bf1566e29330723e027fa5 114 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 9.6E-31 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 SD28_RS00830 3f5d8ff096bf1566e29330723e027fa5 114 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 9.6E-31 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 SD28_RS00830 3f5d8ff096bf1566e29330723e027fa5 114 PANTHER PTHR34182 2 104 1.1E-21 T 23-04-2016 SD28_RS00830 3f5d8ff096bf1566e29330723e027fa5 114 Pfam PF03840 Preprotein translocase SecG subunit 4 73 7.3E-20 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 SD28_RS07625 0b1fa76fa56f954b4d770314fff61dd9 432 SUPERFAMILY SSF53474 70 181 4.51E-5 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS07625 0b1fa76fa56f954b4d770314fff61dd9 432 SUPERFAMILY SSF53474 3 13 4.51E-5 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS05515 651d9ddeeb1b2f66793d3c5bb92b61ec 198 Pfam PF04350 Pilus assembly protein, PilO 58 192 7.2E-9 T 23-04-2016 IPR007445 Pilus assembly protein, PilO SD28_RS05515 651d9ddeeb1b2f66793d3c5bb92b61ec 198 Gene3D G3DSA:3.30.70.60 98 193 3.1E-10 T 23-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 SD28_RS00080 a970a649e11b79445a28ccc924bfd482 199 Pfam PF09335 SNARE associated Golgi protein 26 145 1.8E-14 T 23-04-2016 IPR032816 SNARE associated Golgi protein SD28_RS00080 a970a649e11b79445a28ccc924bfd482 199 PANTHER PTHR30353 5 198 5.0E-21 T 23-04-2016 IPR032818 DedA family SD28_RS04185 83abccf0032b683db5a912c95bf83497 221 Pfam PF01863 Protein of unknown function DUF45 12 221 1.4E-49 T 23-04-2016 IPR002725 Protein of unknown function DUF45 SD28_RS04185 83abccf0032b683db5a912c95bf83497 221 PANTHER PTHR30399 3 221 6.4E-30 T 23-04-2016 SD28_RS01735 a1c17c890f03fe2832af14d946dadb8f 229 Pfam PF08478 POTRA domain, FtsQ-type 36 99 4.6E-5 T 23-04-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type SD28_RS01735 a1c17c890f03fe2832af14d946dadb8f 229 PANTHER PTHR35851 1 227 6.7E-19 T 23-04-2016 SD28_RS01735 a1c17c890f03fe2832af14d946dadb8f 229 PANTHER PTHR35851:SF1 1 227 6.7E-19 T 23-04-2016 SD28_RS01735 a1c17c890f03fe2832af14d946dadb8f 229 Pfam PF03799 Cell division protein FtsQ 105 216 1.1E-7 T 23-04-2016 IPR005548 Cell division protein FtsQ/DivIB SD28_RS06785 447626b31228c418fc3bd1367b48b832 204 PANTHER PTHR30576 1 193 5.5E-81 T 23-04-2016 SD28_RS06785 447626b31228c418fc3bd1367b48b832 204 Pfam PF02397 Bacterial sugar transferase 7 185 1.9E-55 T 23-04-2016 IPR003362 Bacterial sugar transferase SD28_RS03135 ef13f6c871a7488546b663f024c4498c 295 Gene3D G3DSA:1.10.443.10 112 284 5.9E-46 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 SD28_RS03135 ef13f6c871a7488546b663f024c4498c 295 Pfam PF00589 Phage integrase family 114 278 1.3E-38 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 SD28_RS03135 ef13f6c871a7488546b663f024c4498c 295 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 10 88 2.5E-16 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 SD28_RS03135 ef13f6c871a7488546b663f024c4498c 295 PANTHER PTHR30349:SF17 10 295 1.3E-103 T 23-04-2016 SD28_RS03135 ef13f6c871a7488546b663f024c4498c 295 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 6 292 30.867 T 23-04-2016 IPR023009 Tyrosine recombinase XerC/XerD SD28_RS03135 ef13f6c871a7488546b663f024c4498c 295 PANTHER PTHR30349 10 295 1.3E-103 T 23-04-2016 SD28_RS03135 ef13f6c871a7488546b663f024c4498c 295 Gene3D G3DSA:1.10.150.130 9 99 5.5E-22 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal SD28_RS03135 ef13f6c871a7488546b663f024c4498c 295 SUPERFAMILY SSF56349 11 282 2.91E-54 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 SD28_RS05590 2cf23e3e2d6b8f1a14beb555cc635fc5 210 Pfam PF01596 O-methyltransferase 22 210 4.4E-30 T 23-04-2016 IPR002935 O-methyltransferase, family 3 GO:0008171 SD28_RS05590 2cf23e3e2d6b8f1a14beb555cc635fc5 210 PANTHER PTHR10509 8 210 2.0E-42 T 23-04-2016 SD28_RS05590 2cf23e3e2d6b8f1a14beb555cc635fc5 210 SUPERFAMILY SSF53335 7 209 5.95E-34 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS05590 2cf23e3e2d6b8f1a14beb555cc635fc5 210 Gene3D G3DSA:3.40.50.150 4 209 1.9E-51 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS05590 2cf23e3e2d6b8f1a14beb555cc635fc5 210 PANTHER PTHR10509:SF14 8 210 2.0E-42 T 23-04-2016 SD28_RS07770 8be7cefa5bf6ff30a53e132ad59ea176 155 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 18 5.8E-4 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS07770 8be7cefa5bf6ff30a53e132ad59ea176 155 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site SD28_RS04940 c57ba7c581a0b358273206399f8cb228 422 Pfam PF07690 Major Facilitator Superfamily 20 363 7.1E-37 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS04940 c57ba7c581a0b358273206399f8cb228 422 PANTHER PTHR23512 4 417 3.1E-49 T 23-04-2016 SD28_RS04940 c57ba7c581a0b358273206399f8cb228 422 SUPERFAMILY SSF103473 8 415 1.07E-57 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS04940 c57ba7c581a0b358273206399f8cb228 422 Gene3D G3DSA:1.20.1250.20 215 410 4.5E-18 T 23-04-2016 SD28_RS04940 c57ba7c581a0b358273206399f8cb228 422 Gene3D G3DSA:1.20.1250.20 11 197 2.0E-24 T 23-04-2016 SD28_RS04940 c57ba7c581a0b358273206399f8cb228 422 PANTHER PTHR23512:SF1 4 417 3.1E-49 T 23-04-2016 SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 SUPERFAMILY SSF110942 513 627 5.1E-32 T 23-04-2016 SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 169 2.2E-15 T 23-04-2016 SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 PIRSF PIRSF002583 1 628 5.0E-214 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 Gene3D G3DSA:3.30.565.10 4 239 4.1E-78 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 24 33 - T 23-04-2016 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 PRINTS PR00775 90kDa heat shock protein signature 119 141 1.6E-60 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 PRINTS PR00775 90kDa heat shock protein signature 189 207 1.6E-60 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 PRINTS PR00775 90kDa heat shock protein signature 171 188 1.6E-60 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 PRINTS PR00775 90kDa heat shock protein signature 25 47 1.6E-60 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 PRINTS PR00775 90kDa heat shock protein signature 92 109 1.6E-60 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 PRINTS PR00775 90kDa heat shock protein signature 74 91 1.6E-60 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 PRINTS PR00775 90kDa heat shock protein signature 4 24 1.6E-60 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 PANTHER PTHR11528:SF44 2 625 8.9E-297 T 23-04-2016 SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 SMART SM00387 26 183 5.0E-7 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 SUPERFAMILY SSF55874 4 210 1.27E-62 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 Hamap MF_00505 Chaperone protein HtpG [htpG]. 1 628 31.527 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 SUPERFAMILY SSF54211 232 484 3.64E-95 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 Pfam PF00183 Hsp90 protein 222 628 1.6E-127 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 SD28_RS02445 2e29ab38f1a85cc9c8a307d2fabaa832 628 PANTHER PTHR11528 2 625 8.9E-297 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 SD28_RS00495 3dadeb793283a069581e371fa0e83b86 321 PANTHER PTHR30365:SF4 1 321 7.5E-66 T 23-04-2016 SD28_RS00495 3dadeb793283a069581e371fa0e83b86 321 PANTHER PTHR30365 1 321 7.5E-66 T 23-04-2016 SD28_RS00495 3dadeb793283a069581e371fa0e83b86 321 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 4 311 1.4E-64 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 SD28_RS06115 bf98bb45ba1c25042ca00ee3d2b25bbf 268 SUPERFAMILY SSF161098 11 250 3.27E-55 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 SD28_RS06115 bf98bb45ba1c25042ca00ee3d2b25bbf 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 265 1.2E-23 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 SD28_RS06115 bf98bb45ba1c25042ca00ee3d2b25bbf 268 PANTHER PTHR30222 4 247 2.3E-55 T 23-04-2016 SD28_RS06115 bf98bb45ba1c25042ca00ee3d2b25bbf 268 PANTHER PTHR30222:SF6 4 247 2.3E-55 T 23-04-2016 SD28_RS06115 bf98bb45ba1c25042ca00ee3d2b25bbf 268 Gene3D G3DSA:1.10.3720.10 3 266 6.7E-61 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 SD28_RS06755 e25cd3726707fb1cf96051d893eebea3 297 PANTHER PTHR11732:SF14 1 287 6.1E-29 T 23-04-2016 SD28_RS06755 e25cd3726707fb1cf96051d893eebea3 297 Pfam PF00248 Aldo/keto reductase family 14 267 3.5E-28 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain SD28_RS06755 e25cd3726707fb1cf96051d893eebea3 297 SUPERFAMILY SSF51430 1 286 9.69E-45 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain SD28_RS06755 e25cd3726707fb1cf96051d893eebea3 297 PANTHER PTHR11732 1 287 6.1E-29 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta SD28_RS06755 e25cd3726707fb1cf96051d893eebea3 297 Gene3D G3DSA:3.20.20.100 1 282 3.7E-36 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain SD28_RS01500 3ae9a228b6ac23839151f86a3a4e3e0c 131 Pfam PF12092 Protein of unknown function (DUF3568) 13 129 1.5E-30 T 23-04-2016 IPR021952 Protein of unknown function DUF3568 SD28_RS01500 3ae9a228b6ac23839151f86a3a4e3e0c 131 ProSitePatterns PS00318 Hydroxymethylglutaryl-coenzyme A reductases signature 2. 26 33 - T 23-04-2016 IPR023076 Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|UniPathway: UPA00058 SD28_RS00320 1ca194834f95c28973f9904b3c2fe714 393 Pfam PF07690 Major Facilitator Superfamily 13 348 3.1E-36 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS00320 1ca194834f95c28973f9904b3c2fe714 393 Gene3D G3DSA:1.20.1250.20 202 384 3.6E-5 T 23-04-2016 SD28_RS00320 1ca194834f95c28973f9904b3c2fe714 393 SUPERFAMILY SSF103473 6 384 2.22E-52 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS00320 1ca194834f95c28973f9904b3c2fe714 393 Gene3D G3DSA:1.20.1250.20 6 188 4.5E-28 T 23-04-2016 SD28_RS00320 1ca194834f95c28973f9904b3c2fe714 393 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 5 383 3.1E-68 T 23-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 SD28_RS00320 1ca194834f95c28973f9904b3c2fe714 393 PANTHER PTHR23502:SF19 9 384 1.9E-63 T 23-04-2016 SD28_RS00320 1ca194834f95c28973f9904b3c2fe714 393 PANTHER PTHR23502 9 384 1.9E-63 T 23-04-2016 SD28_RS00845 29148c61644e4b51c8d22c1b8dc2d6ce 176 PANTHER PTHR32315 3 175 1.4E-74 T 23-04-2016 SD28_RS00845 29148c61644e4b51c8d22c1b8dc2d6ce 176 SUPERFAMILY SSF53271 3 169 1.01E-48 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS00845 29148c61644e4b51c8d22c1b8dc2d6ce 176 Pfam PF00156 Phosphoribosyl transferase domain 34 153 3.3E-14 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 SD28_RS00845 29148c61644e4b51c8d22c1b8dc2d6ce 176 Gene3D G3DSA:3.40.50.2020 3 175 5.8E-63 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS00845 29148c61644e4b51c8d22c1b8dc2d6ce 176 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 6 174 1.2E-64 T 23-04-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 SD28_RS00845 29148c61644e4b51c8d22c1b8dc2d6ce 176 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 6 175 35.617 T 23-04-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 SD28_RS02500 f27a4bf64f08dc3c391099286c7b9480 134 SUPERFAMILY SSF141066 40 130 1.96E-5 T 23-04-2016 IPR018990 Proteinase inhibitor I42, chagasin SD28_RS00960 1eeaa5261554f90a84e1604289820fcb 329 Gene3D G3DSA:1.20.1250.20 139 321 3.5E-15 T 23-04-2016 SD28_RS00960 1eeaa5261554f90a84e1604289820fcb 329 Pfam PF07690 Major Facilitator Superfamily 20 283 1.4E-10 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS00960 1eeaa5261554f90a84e1604289820fcb 329 PANTHER PTHR23508 1 321 9.1E-47 T 23-04-2016 SD28_RS00960 1eeaa5261554f90a84e1604289820fcb 329 SUPERFAMILY SSF103473 1 322 1.7E-29 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS02745 204be1191c94f9c5283e964e99fe4d18 222 SUPERFAMILY SSF48317 11 217 1.29E-16 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase SD28_RS02745 204be1191c94f9c5283e964e99fe4d18 222 Gene3D G3DSA:1.20.144.10 62 217 2.6E-15 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase SD28_RS02745 204be1191c94f9c5283e964e99fe4d18 222 Pfam PF01569 PAP2 superfamily 92 219 7.3E-18 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase SD28_RS00665 143c5b0952e93781d73568be2dd867b0 222 Gene3D G3DSA:1.10.10.640 175 187 1.3E-7 T 23-04-2016 IPR023094 Toluene tolerance protein, alpha-helical SD28_RS00665 143c5b0952e93781d73568be2dd867b0 222 Gene3D G3DSA:1.10.10.640 72 111 1.3E-7 T 23-04-2016 IPR023094 Toluene tolerance protein, alpha-helical SD28_RS00665 143c5b0952e93781d73568be2dd867b0 222 Gene3D G3DSA:3.10.450.50 25 69 6.6E-8 T 23-04-2016 IPR032710 NTF2-like domain SD28_RS00665 143c5b0952e93781d73568be2dd867b0 222 Gene3D G3DSA:3.10.450.50 114 174 6.6E-8 T 23-04-2016 IPR032710 NTF2-like domain SD28_RS00665 143c5b0952e93781d73568be2dd867b0 222 PANTHER PTHR36573 1 214 1.9E-13 T 23-04-2016 SD28_RS00665 143c5b0952e93781d73568be2dd867b0 222 Pfam PF05494 MlaC protein 36 186 9.0E-22 T 23-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC SD28_RS00020 a4fb6953a2a433338b3cc304a34d185b 779 SUPERFAMILY SSF48403 443 651 4.71E-14 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS00020 a4fb6953a2a433338b3cc304a34d185b 779 Gene3D G3DSA:1.25.40.20 445 652 1.5E-15 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS02950 e63bd561508391a6cb24663acfbb38e3 202 Gene3D G3DSA:2.60.120.620 6 59 2.0E-4 T 23-04-2016 SD28_RS02950 e63bd561508391a6cb24663acfbb38e3 202 PANTHER PTHR12907 12 199 5.9E-31 T 23-04-2016 SD28_RS02950 e63bd561508391a6cb24663acfbb38e3 202 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 110 199 1.8E-19 T 23-04-2016 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 SD28_RS02950 e63bd561508391a6cb24663acfbb38e3 202 SMART SM00702 21 200 5.4E-12 T 23-04-2016 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 SD28_RS02950 e63bd561508391a6cb24663acfbb38e3 202 PANTHER PTHR12907:SF14 12 199 5.9E-31 T 23-04-2016 SD28_RS02950 e63bd561508391a6cb24663acfbb38e3 202 SUPERFAMILY SSF51197 10 148 9.48E-6 T 23-04-2016 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 161 175 - T 23-04-2016 IPR019775 WD40 repeat, conserved site SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 241 255 - T 23-04-2016 IPR019775 WD40 repeat, conserved site SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 Gene3D G3DSA:2.130.10.10 57 337 1.9E-57 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 PRINTS PR00320 G protein beta WD-40 repeat signature 161 175 3.8E-11 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 PRINTS PR00320 G protein beta WD-40 repeat signature 282 296 3.8E-11 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 PRINTS PR00320 G protein beta WD-40 repeat signature 241 255 3.8E-11 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 PANTHER PTHR22844 60 337 1.0E-43 T 23-04-2016 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 SMART SM00320 216 254 8.8E-8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 SMART SM00320 299 337 4.6 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 SMART SM00320 260 295 5.8E-4 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 SMART SM00320 136 174 2.7E-8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 SMART SM00320 97 133 1.2 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 SMART SM00320 53 90 1.4E-5 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 SMART SM00320 180 213 1.8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 SUPERFAMILY SSF50978 55 337 4.45E-58 T 23-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 Pfam PF00400 WD domain, G-beta repeat 256 295 2.8E-4 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 Pfam PF00400 WD domain, G-beta repeat 223 254 5.5E-8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 Pfam PF00400 WD domain, G-beta repeat 142 174 1.2E-7 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 Pfam PF00400 WD domain, G-beta repeat 114 133 0.19 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 Pfam PF00400 WD domain, G-beta repeat 305 337 0.02 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 Pfam PF00400 WD domain, G-beta repeat 59 90 0.0055 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS06090 30d6b7489f2a23f00fb417cd2f2ad7af 337 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 282 296 - T 23-04-2016 IPR019775 WD40 repeat, conserved site SD28_RS01250 b6f5558c0a74a0e8eb101d9d90b2e2d7 216 Pfam PF10277 Frag1/DRAM/Sfk1 family 11 209 3.6E-7 T 23-04-2016 IPR019402 Frag1/DRAM/Sfk1 SD28_RS01125 41322a2f37bd5bc0f2e3f1f5cb94ca19 1603 SUPERFAMILY SSF54001 1473 1571 3.34E-11 T 23-04-2016 SD28_RS01125 41322a2f37bd5bc0f2e3f1f5cb94ca19 1603 Gene3D G3DSA:3.30.310.130 1473 1549 7.8E-6 T 23-04-2016 SD28_RS06750 9ce88f02595bcdb07c9a07cccde69d69 253 PANTHER PTHR21485:SF16 3 144 1.2E-26 T 23-04-2016 SD28_RS06750 9ce88f02595bcdb07c9a07cccde69d69 253 PANTHER PTHR21485 3 144 1.2E-26 T 23-04-2016 SD28_RS06750 9ce88f02595bcdb07c9a07cccde69d69 253 Gene3D G3DSA:3.90.550.10 4 210 7.3E-31 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS06750 9ce88f02595bcdb07c9a07cccde69d69 253 Pfam PF02348 Cytidylyltransferase 6 174 1.3E-29 T 23-04-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 SD28_RS06750 9ce88f02595bcdb07c9a07cccde69d69 253 SUPERFAMILY SSF53448 3 208 4.55E-29 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases SD28_RS05265 f4a8d116e58f39b08dd01baa4a7e3dba 92 Pfam PF13358 DDE superfamily endonuclease 2 60 1.8E-13 T 23-04-2016 SD28_RS05925 9bd6776a6ffaeedae60cf890cce09194 112 Pfam PF05239 PRC-barrel domain 7 81 1.2E-18 T 23-04-2016 IPR027275 PRC-barrel domain SD28_RS05925 9bd6776a6ffaeedae60cf890cce09194 112 PANTHER PTHR36505 6 112 7.1E-28 T 23-04-2016 SD28_RS05925 9bd6776a6ffaeedae60cf890cce09194 112 SUPERFAMILY SSF50346 8 97 2.2E-20 T 23-04-2016 IPR011033 PRC-barrel-like SD28_RS05925 9bd6776a6ffaeedae60cf890cce09194 112 PANTHER PTHR36505:SF1 6 112 7.1E-28 T 23-04-2016 SD28_RS05925 9bd6776a6ffaeedae60cf890cce09194 112 Gene3D G3DSA:2.30.30.240 7 63 1.9E-19 T 23-04-2016 SD28_RS07020 9dc246aa42c74542eaaac0e037727563 870 Pfam PF04453 Organic solvent tolerance protein 365 774 8.8E-85 T 23-04-2016 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 SD28_RS07020 9dc246aa42c74542eaaac0e037727563 870 Pfam PF03968 OstA-like protein 152 259 2.9E-5 T 23-04-2016 IPR005653 Organic solvent tolerance-like, N-terminal SD28_RS07020 9dc246aa42c74542eaaac0e037727563 870 Gene3D G3DSA:2.60.450.10 106 165 8.0E-12 T 23-04-2016 SD28_RS07020 9dc246aa42c74542eaaac0e037727563 870 Gene3D G3DSA:2.60.450.10 204 273 8.0E-12 T 23-04-2016 SD28_RS07020 9dc246aa42c74542eaaac0e037727563 870 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 14 843 18.036 T 23-04-2016 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 SD28_RS07020 9dc246aa42c74542eaaac0e037727563 870 PANTHER PTHR30189 110 861 2.6E-52 T 23-04-2016 SD28_RS01350 82dda9381544edfa560f2f41fe962667 125 Pfam PF13698 Domain of unknown function (DUF4156) 22 120 1.1E-24 T 23-04-2016 IPR025294 Protein of unknown function DUF4156 SD28_RS07820 9d7e8383c2c8b2a09437372529f5dd93 89 Pfam PF13808 DDE_Tnp_1-associated 9 64 3.2E-13 T 23-04-2016 IPR032806 H repeat-associated protein, N-terminal SD28_RS00885 5dad091b797e05d61cfac531134655e4 463 SUPERFAMILY SSF103473 21 177 1.26E-30 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS00885 5dad091b797e05d61cfac531134655e4 463 SUPERFAMILY SSF103473 222 457 1.26E-30 T 23-04-2016 IPR020846 Major facilitator superfamily domain SD28_RS00885 5dad091b797e05d61cfac531134655e4 463 Pfam PF07690 Major Facilitator Superfamily 43 361 3.4E-14 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SD28_RS00885 5dad091b797e05d61cfac531134655e4 463 PANTHER PTHR12778 209 450 2.0E-62 T 23-04-2016 SD28_RS00885 5dad091b797e05d61cfac531134655e4 463 PANTHER PTHR12778 24 182 2.0E-62 T 23-04-2016 SD28_RS00885 5dad091b797e05d61cfac531134655e4 463 Gene3D G3DSA:1.20.1250.20 276 455 3.4E-14 T 23-04-2016 SD28_RS00885 5dad091b797e05d61cfac531134655e4 463 Gene3D G3DSA:1.20.1250.20 18 176 2.0E-12 T 23-04-2016 SD28_RS00885 5dad091b797e05d61cfac531134655e4 463 Gene3D G3DSA:1.20.1250.20 221 248 2.0E-12 T 23-04-2016 SD28_RS04330 63c2272a1232e9ddcb0a0fe42e9129d0 275 Gene3D G3DSA:2.60.450.10 142 256 9.9E-21 T 23-04-2016 SD28_RS04330 63c2272a1232e9ddcb0a0fe42e9129d0 275 Gene3D G3DSA:2.60.450.10 66 93 9.9E-21 T 23-04-2016 SD28_RS04330 63c2272a1232e9ddcb0a0fe42e9129d0 275 Pfam PF03968 OstA-like protein 183 240 3.4E-6 T 23-04-2016 IPR005653 Organic solvent tolerance-like, N-terminal SD28_RS00525 8ee86635a2ed05c1c9474358d8065820 433 PANTHER PTHR11119 4 402 1.4E-102 T 23-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 SD28_RS00525 8ee86635a2ed05c1c9474358d8065820 433 PANTHER PTHR11119:SF9 4 402 1.4E-102 T 23-04-2016 IPR029940 AzgA purine transporter GO:0005345|GO:0006863 SD28_RS00525 8ee86635a2ed05c1c9474358d8065820 433 Pfam PF00860 Permease family 16 392 4.8E-36 T 23-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 SD28_RS00605 ac3b1ced78a2fc80050614ad875c3f89 174 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 2 166 1.8E-47 T 23-04-2016 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 SD28_RS00605 ac3b1ced78a2fc80050614ad875c3f89 174 Pfam PF02470 MlaD protein 40 118 8.6E-19 T 23-04-2016 IPR003399 Mce/MlaD SD28_RS00605 ac3b1ced78a2fc80050614ad875c3f89 174 PANTHER PTHR33371 1 165 1.3E-31 T 23-04-2016 SD28_RS03155 9bb63c8adf69039ed913dc490967641d 314 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 3 143 1.1E-57 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS03155 9bb63c8adf69039ed913dc490967641d 314 SUPERFAMILY SSF52096 3 311 1.24E-94 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS03155 9bb63c8adf69039ed913dc490967641d 314 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 192 201 4.5E-45 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS03155 9bb63c8adf69039ed913dc490967641d 314 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 148 161 4.5E-45 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS03155 9bb63c8adf69039ed913dc490967641d 314 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 108 126 4.5E-45 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS03155 9bb63c8adf69039ed913dc490967641d 314 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 83 94 4.5E-45 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS03155 9bb63c8adf69039ed913dc490967641d 314 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 129 145 4.5E-45 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS03155 9bb63c8adf69039ed913dc490967641d 314 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 164 177 4.5E-45 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS03155 9bb63c8adf69039ed913dc490967641d 314 Gene3D G3DSA:3.90.226.10 51 267 9.3E-47 T 23-04-2016 IPR029045 ClpP/crotonase-like domain SD28_RS03155 9bb63c8adf69039ed913dc490967641d 314 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 3 311 46.935 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS03155 9bb63c8adf69039ed913dc490967641d 314 PANTHER PTHR22855:SF42 1 313 1.9E-115 T 23-04-2016 SD28_RS03155 9bb63c8adf69039ed913dc490967641d 314 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 313 1.2E-139 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 SD28_RS03155 9bb63c8adf69039ed913dc490967641d 314 PANTHER PTHR22855 1 313 1.9E-115 T 23-04-2016 SD28_RS04425 64959b8c1835c7dc22a2f7b6a471ceec 117 SMART SM00905 5 117 3.8E-22 T 23-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 SD28_RS04425 64959b8c1835c7dc22a2f7b6a471ceec 117 SUPERFAMILY SSF55620 2 114 2.61E-22 T 23-04-2016 SD28_RS04425 64959b8c1835c7dc22a2f7b6a471ceec 117 Pfam PF02152 Dihydroneopterin aldolase 5 114 9.5E-18 T 23-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 SD28_RS04425 64959b8c1835c7dc22a2f7b6a471ceec 117 Gene3D G3DSA:3.30.1130.10 3 115 3.3E-22 T 23-04-2016 SD28_RS04425 64959b8c1835c7dc22a2f7b6a471ceec 117 TIGRFAM TIGR00526 folB_dom: FolB domain 4 116 3.5E-19 T 23-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 SD28_RS05915 57db609e1c929dbf8c3a3f60521739b1 76 Pfam PF06150 ChaB 9 76 1.0E-23 T 23-04-2016 IPR009317 ChaB SD28_RS05915 57db609e1c929dbf8c3a3f60521739b1 76 SUPERFAMILY SSF140376 2 69 2.35E-25 T 23-04-2016 SD28_RS01550 dbbc8911469fb18a3680fb43a411fcbf 624 PANTHER PTHR11785:SF125 17 487 3.1E-122 T 23-04-2016 SD28_RS01550 dbbc8911469fb18a3680fb43a411fcbf 624 Pfam PF13520 Amino acid permease 22 442 1.2E-29 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS01550 dbbc8911469fb18a3680fb43a411fcbf 624 PANTHER PTHR11785 17 487 3.1E-122 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS02455 48a73ed1e27ec1c3e8eceb61b69ec511 140 Gene3D G3DSA:3.30.70.141 1 138 1.1E-57 T 23-04-2016 SD28_RS02455 48a73ed1e27ec1c3e8eceb61b69ec511 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 5.2E-39 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SD28_RS02455 48a73ed1e27ec1c3e8eceb61b69ec511 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 5.2E-39 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SD28_RS02455 48a73ed1e27ec1c3e8eceb61b69ec511 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 5.2E-39 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SD28_RS02455 48a73ed1e27ec1c3e8eceb61b69ec511 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 5.2E-39 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SD28_RS02455 48a73ed1e27ec1c3e8eceb61b69ec511 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 5.2E-39 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SD28_RS02455 48a73ed1e27ec1c3e8eceb61b69ec511 140 Pfam PF00334 Nucleoside diphosphate kinase 4 138 1.8E-55 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SD28_RS02455 48a73ed1e27ec1c3e8eceb61b69ec511 140 SUPERFAMILY SSF54919 1 139 9.04E-57 T 23-04-2016 SD28_RS02455 48a73ed1e27ec1c3e8eceb61b69ec511 140 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 35.138 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SD28_RS02455 48a73ed1e27ec1c3e8eceb61b69ec511 140 PANTHER PTHR11349 1 139 2.7E-66 T 23-04-2016 SD28_RS02455 48a73ed1e27ec1c3e8eceb61b69ec511 140 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 23-04-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SD28_RS02455 48a73ed1e27ec1c3e8eceb61b69ec511 140 SMART SM00562 3 140 1.7E-85 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SD28_RS01405 1428e50975c36251ecf7dd06e87624c9 598 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 408 577 3.4E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 SD28_RS01405 1428e50975c36251ecf7dd06e87624c9 598 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 263 1.8E-12 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 SD28_RS01405 1428e50975c36251ecf7dd06e87624c9 598 SUPERFAMILY SSF161098 66 267 1.14E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 SD28_RS01405 1428e50975c36251ecf7dd06e87624c9 598 PANTHER PTHR30151 385 594 5.9E-135 T 23-04-2016 SD28_RS01405 1428e50975c36251ecf7dd06e87624c9 598 PANTHER PTHR30151 71 234 5.9E-135 T 23-04-2016 SD28_RS01405 1428e50975c36251ecf7dd06e87624c9 598 PANTHER PTHR30151:SF10 385 594 5.9E-135 T 23-04-2016 SD28_RS01405 1428e50975c36251ecf7dd06e87624c9 598 PANTHER PTHR30151:SF10 71 234 5.9E-135 T 23-04-2016 SD28_RS01405 1428e50975c36251ecf7dd06e87624c9 598 Gene3D G3DSA:1.10.3720.10 351 578 2.4E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 SD28_RS01405 1428e50975c36251ecf7dd06e87624c9 598 Gene3D G3DSA:1.10.3720.10 21 264 5.8E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 SD28_RS01405 1428e50975c36251ecf7dd06e87624c9 598 SUPERFAMILY SSF161098 392 581 1.96E-14 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 SD28_RS06890 704bb88ffb70472c40214ca39bb4e8fc 180 Pfam PF12915 Protein of unknown function (DUF3833) 15 175 5.8E-61 T 23-04-2016 IPR024409 Protein of unknown function DUF3833 SD28_RS01905 a97c228ab9fc3da29a6b171a526cbc60 774 PANTHER PTHR11219:SF46 199 309 2.0E-16 T 23-04-2016 SD28_RS01905 a97c228ab9fc3da29a6b171a526cbc60 774 PANTHER PTHR11219:SF46 459 601 2.0E-16 T 23-04-2016 SD28_RS01905 a97c228ab9fc3da29a6b171a526cbc60 774 PANTHER PTHR11219:SF46 325 442 2.0E-16 T 23-04-2016 SD28_RS01905 a97c228ab9fc3da29a6b171a526cbc60 774 PANTHER PTHR11219:SF46 132 178 2.0E-16 T 23-04-2016 SD28_RS01905 a97c228ab9fc3da29a6b171a526cbc60 774 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 512 592 9.6E-20 T 23-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 SD28_RS01905 a97c228ab9fc3da29a6b171a526cbc60 774 PANTHER PTHR11219 199 309 2.0E-16 T 23-04-2016 SD28_RS01905 a97c228ab9fc3da29a6b171a526cbc60 774 PANTHER PTHR11219 459 601 2.0E-16 T 23-04-2016 SD28_RS01905 a97c228ab9fc3da29a6b171a526cbc60 774 PANTHER PTHR11219 325 442 2.0E-16 T 23-04-2016 SD28_RS01905 a97c228ab9fc3da29a6b171a526cbc60 774 PANTHER PTHR11219 132 178 2.0E-16 T 23-04-2016 SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 PANTHER PTHR22844 211 467 3.6E-31 T 23-04-2016 SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 291 305 - T 23-04-2016 IPR019775 WD40 repeat, conserved site SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 414 428 - T 23-04-2016 IPR019775 WD40 repeat, conserved site SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 SMART SM00320 222 260 3.1 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 SMART SM00320 389 427 1.8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 SMART SM00320 430 468 0.003 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 SMART SM00320 177 215 86.0 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 SMART SM00320 264 304 0.0089 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 SMART SM00320 308 346 1.6 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 SMART SM00320 347 386 7.8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 Pfam PF00400 WD domain, G-beta repeat 279 304 0.057 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 Pfam PF00400 WD domain, G-beta repeat 436 467 0.0013 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 PRINTS PR00320 G protein beta WD-40 repeat signature 455 469 3.1E-6 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 PRINTS PR00320 G protein beta WD-40 repeat signature 291 305 3.1E-6 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 PRINTS PR00320 G protein beta WD-40 repeat signature 414 428 3.1E-6 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 Gene3D G3DSA:2.130.10.10 187 468 3.0E-40 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 SD28_RS00680 17e7023574a6bbd02f9850eaa175e657 604 SUPERFAMILY SSF50978 186 479 1.51E-47 T 23-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 SD28_RS03900 4e1a249bc4045addc5c4b774a2405394 283 PANTHER PTHR10188 4 259 1.6E-67 T 23-04-2016 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 SD28_RS03900 4e1a249bc4045addc5c4b774a2405394 283 PANTHER PTHR10188:SF24 4 259 1.6E-67 T 23-04-2016 SD28_RS03900 4e1a249bc4045addc5c4b774a2405394 283 Pfam PF01112 Asparaginase 3 280 2.0E-71 T 23-04-2016 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 SD28_RS03900 4e1a249bc4045addc5c4b774a2405394 283 SUPERFAMILY SSF56235 2 267 3.38E-69 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal SD28_RS00195 10a18bc8d2e36a7a605cab5ceaa31ddd 283 TIGRFAM TIGR02794 tolA_full: protein TolA 93 280 9.7E-24 T 23-04-2016 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 SD28_RS03140 ccbd63bcaf6edeccc4140706757f068d 405 PANTHER PTHR32195 10 405 1.0E-70 T 23-04-2016 SD28_RS03140 ccbd63bcaf6edeccc4140706757f068d 405 PRINTS PR00166 Aromatic amino acid permease signature 328 346 3.75E-38 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS03140 ccbd63bcaf6edeccc4140706757f068d 405 PRINTS PR00166 Aromatic amino acid permease signature 88 108 3.75E-38 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS03140 ccbd63bcaf6edeccc4140706757f068d 405 PRINTS PR00166 Aromatic amino acid permease signature 349 368 3.75E-38 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS03140 ccbd63bcaf6edeccc4140706757f068d 405 PRINTS PR00166 Aromatic amino acid permease signature 184 206 3.75E-38 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS03140 ccbd63bcaf6edeccc4140706757f068d 405 PRINTS PR00166 Aromatic amino acid permease signature 16 39 3.75E-38 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS03140 ccbd63bcaf6edeccc4140706757f068d 405 PRINTS PR00166 Aromatic amino acid permease signature 43 62 3.75E-38 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS03140 ccbd63bcaf6edeccc4140706757f068d 405 PRINTS PR00166 Aromatic amino acid permease signature 292 311 3.75E-38 T 23-04-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 SD28_RS03140 ccbd63bcaf6edeccc4140706757f068d 405 Pfam PF03222 Tryptophan/tyrosine permease family 10 402 7.1E-79 T 23-04-2016 IPR018227 Tryptophan/tyrosine permease GO:0003333 SD28_RS01835 f437b9b104eadeee29cbb062f98d46a7 93 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 17 88 3.3E-11 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 SD28_RS01835 f437b9b104eadeee29cbb062f98d46a7 93 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 2 92 1.9E-21 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 SD28_RS01835 f437b9b104eadeee29cbb062f98d46a7 93 SUPERFAMILY SSF141000 1 91 2.09E-21 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 SD28_RS01835 f437b9b104eadeee29cbb062f98d46a7 93 PANTHER PTHR15004 2 92 3.7E-14 T 23-04-2016 SD28_RS04690 64ffe6505a9d5af43d8679d387d7b55a 266 PANTHER PTHR30589 1 254 1.6E-97 T 23-04-2016 SD28_RS04690 64ffe6505a9d5af43d8679d387d7b55a 266 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 254 5.3E-79 T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 SD28_RS04690 64ffe6505a9d5af43d8679d387d7b55a 266 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 139 151 - T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 SD28_RS04690 64ffe6505a9d5af43d8679d387d7b55a 266 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 260 8.3E-74 T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 SD28_RS04690 64ffe6505a9d5af43d8679d387d7b55a 266 PANTHER PTHR30589:SF0 1 254 1.6E-97 T 23-04-2016 SD28_RS04690 64ffe6505a9d5af43d8679d387d7b55a 266 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 260 19.382 T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 SD28_RS05020 a13fdc4037bc1984f37fef6b0d4828e7 92 Gene3D G3DSA:1.10.287.460 19 91 6.7E-17 T 23-04-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 SD28_RS05020 a13fdc4037bc1984f37fef6b0d4828e7 92 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 21 91 4.5E-15 T 23-04-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 SD28_RS06620 3dc8258b350856da792e80fc1d3b5b06 332 Pfam PF00852 Glycosyltransferase family 10 (fucosyltransferase) C-term 213 305 2.0E-12 T 23-04-2016 IPR001503 Glycosyl transferase family 10 GO:0006486|GO:0008417|GO:0016020 UniPathway: UPA00378 SD28_RS06620 3dc8258b350856da792e80fc1d3b5b06 332 SUPERFAMILY SSF53756 50 319 4.08E-34 T 23-04-2016 SD28_RS06620 3dc8258b350856da792e80fc1d3b5b06 332 PANTHER PTHR11929 215 304 1.1E-14 T 23-04-2016 IPR001503 Glycosyl transferase family 10 GO:0006486|GO:0008417|GO:0016020 UniPathway: UPA00378 SD28_RS06620 3dc8258b350856da792e80fc1d3b5b06 332 PANTHER PTHR11929:SF131 215 304 1.1E-14 T 23-04-2016 SD28_RS02290 9b21b3633ce3bdb9de7a6832a94634bb 124 Pfam PF00164 Ribosomal protein S12/S23 11 123 4.3E-42 T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02290 9b21b3633ce3bdb9de7a6832a94634bb 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02290 9b21b3633ce3bdb9de7a6832a94634bb 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 2.3E-68 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 SD28_RS02290 9b21b3633ce3bdb9de7a6832a94634bb 124 SUPERFAMILY SSF50249 3 123 6.43E-51 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS02290 9b21b3633ce3bdb9de7a6832a94634bb 124 PIRSF PIRSF002133 1 124 3.8E-53 T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02290 9b21b3633ce3bdb9de7a6832a94634bb 124 Gene3D G3DSA:2.40.50.140 1 123 5.9E-64 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold SD28_RS02290 9b21b3633ce3bdb9de7a6832a94634bb 124 PANTHER PTHR11652 1 116 2.4E-72 T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SD28_RS02290 9b21b3633ce3bdb9de7a6832a94634bb 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 2.8E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 SD28_RS02290 9b21b3633ce3bdb9de7a6832a94634bb 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 2.8E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 SD28_RS02290 9b21b3633ce3bdb9de7a6832a94634bb 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 2.8E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 SD28_RS02290 9b21b3633ce3bdb9de7a6832a94634bb 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 2.8E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 SD28_RS02290 9b21b3633ce3bdb9de7a6832a94634bb 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 2.8E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 SD28_RS02290 9b21b3633ce3bdb9de7a6832a94634bb 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 2.8E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 SD28_RS02290 9b21b3633ce3bdb9de7a6832a94634bb 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.451 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 SD28_RS06220 7ce9a1abfaa1bc6c9f272f378ff6cff9 184 Pfam PF03602 Conserved hypothetical protein 95 6 175 4.5E-49 T 23-04-2016 SD28_RS06220 7ce9a1abfaa1bc6c9f272f378ff6cff9 184 PANTHER PTHR18895 2 157 3.1E-29 T 23-04-2016 SD28_RS06220 7ce9a1abfaa1bc6c9f272f378ff6cff9 184 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 4 174 4.1E-48 T 23-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS06220 7ce9a1abfaa1bc6c9f272f378ff6cff9 184 Gene3D G3DSA:3.40.50.150 3 175 8.5E-50 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS06220 7ce9a1abfaa1bc6c9f272f378ff6cff9 184 SUPERFAMILY SSF53335 6 160 4.63E-39 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS06220 7ce9a1abfaa1bc6c9f272f378ff6cff9 184 PIRSF PIRSF004553 5 183 3.4E-44 T 23-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 SD28_RS06220 7ce9a1abfaa1bc6c9f272f378ff6cff9 184 PANTHER PTHR18895:SF60 2 157 3.1E-29 T 23-04-2016 SD28_RS04785 88f6a6c13e55894d16f83efb74547a2c 308 PANTHER PTHR12715:SF11 15 308 3.6E-44 T 23-04-2016 SD28_RS04785 88f6a6c13e55894d16f83efb74547a2c 308 SUPERFAMILY SSF103481 46 152 5.89E-15 T 23-04-2016 SD28_RS04785 88f6a6c13e55894d16f83efb74547a2c 308 Pfam PF00892 EamA-like transporter family 14 150 1.4E-21 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 SD28_RS04785 88f6a6c13e55894d16f83efb74547a2c 308 Pfam PF00892 EamA-like transporter family 166 300 5.5E-17 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 SD28_RS04785 88f6a6c13e55894d16f83efb74547a2c 308 PANTHER PTHR12715 15 308 3.6E-44 T 23-04-2016 SD28_RS04785 88f6a6c13e55894d16f83efb74547a2c 308 SUPERFAMILY SSF103481 209 301 2.62E-14 T 23-04-2016 SD28_RS04325 2810cd79065113287dbb374d93de2bcd 217 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 17 215 5.5E-30 T 23-04-2016 IPR010664 Lipopolysaccharide assembly, LptC-related SD28_RS04325 2810cd79065113287dbb374d93de2bcd 217 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 12 133 5.3E-11 T 23-04-2016 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 SD28_RS02190 4833b64021fd35ac4a6253a2637b93fc 399 PANTHER PTHR30213 12 272 3.2E-49 T 23-04-2016 SD28_RS02190 4833b64021fd35ac4a6253a2637b93fc 399 Pfam PF03631 Virulence factor BrkB 28 274 3.1E-43 T 23-04-2016 IPR017039 Virulence factor BrkB SD28_RS02190 4833b64021fd35ac4a6253a2637b93fc 399 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 21 273 7.1E-48 T 23-04-2016 IPR017039 Virulence factor BrkB SD28_RS02190 4833b64021fd35ac4a6253a2637b93fc 399 PANTHER PTHR30213:SF0 12 272 3.2E-49 T 23-04-2016 SD28_RS07235 0c98b51c2b27fc857e126f7a80bb975d 177 PANTHER PTHR35850 7 171 1.4E-32 T 23-04-2016 SD28_RS07235 0c98b51c2b27fc857e126f7a80bb975d 177 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 6 158 1.5E-43 T 23-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 SD28_RS07235 0c98b51c2b27fc857e126f7a80bb975d 177 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 3 159 9.7E-45 T 23-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 SD28_RS06540 57180c1445e1629caa2979d1fb17e8d3 248 Pfam PF01709 Transcriptional regulator 5 237 3.3E-96 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like SD28_RS06540 57180c1445e1629caa2979d1fb17e8d3 248 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 7.8E-102 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like SD28_RS06540 57180c1445e1629caa2979d1fb17e8d3 248 SUPERFAMILY SSF75625 3 246 2.75E-97 T 23-04-2016 IPR029072 YebC-like SD28_RS06540 57180c1445e1629caa2979d1fb17e8d3 248 Gene3D G3DSA:3.30.70.980 135 204 5.2E-26 T 23-04-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 SD28_RS06540 57180c1445e1629caa2979d1fb17e8d3 248 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 36.256 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like SD28_RS06540 57180c1445e1629caa2979d1fb17e8d3 248 PANTHER PTHR12532 1 241 2.0E-113 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like SD28_RS06540 57180c1445e1629caa2979d1fb17e8d3 248 Gene3D G3DSA:1.10.10.200 1 79 6.6E-36 T 23-04-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like SD28_RS06540 57180c1445e1629caa2979d1fb17e8d3 248 Gene3D G3DSA:3.30.1270.10 212 247 2.1E-42 T 23-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 SD28_RS06540 57180c1445e1629caa2979d1fb17e8d3 248 Gene3D G3DSA:3.30.1270.10 83 134 2.1E-42 T 23-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 SD28_RS01605 cec807fa48ac09ed49774cd31663db3d 299 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 3 290 3.0E-60 T 23-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 SD28_RS01605 cec807fa48ac09ed49774cd31663db3d 299 PIRSF PIRSF026649 1 299 1.8E-86 T 23-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 SD28_RS01605 cec807fa48ac09ed49774cd31663db3d 299 PANTHER PTHR30606 4 299 2.0E-80 T 23-04-2016 SD28_RS01605 cec807fa48ac09ed49774cd31663db3d 299 PANTHER PTHR30606:SF5 4 299 2.0E-80 T 23-04-2016 SD28_RS01800 e24831a8c73c57dcca58ab07cbc09d0f 512 SUPERFAMILY SSF56954 86 497 2.49E-67 T 23-04-2016 SD28_RS01800 e24831a8c73c57dcca58ab07cbc09d0f 512 PANTHER PTHR30026 86 512 1.3E-57 T 23-04-2016 SD28_RS01800 e24831a8c73c57dcca58ab07cbc09d0f 512 Pfam PF02321 Outer membrane efflux protein 89 271 2.4E-17 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 SD28_RS01800 e24831a8c73c57dcca58ab07cbc09d0f 512 Pfam PF02321 Outer membrane efflux protein 297 484 5.0E-20 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 SD28_RS01800 e24831a8c73c57dcca58ab07cbc09d0f 512 PANTHER PTHR30026:SF3 86 512 1.3E-57 T 23-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 SD28_RS01800 e24831a8c73c57dcca58ab07cbc09d0f 512 Gene3D G3DSA:1.20.1600.10 85 488 5.2E-54 T 23-04-2016 SD28_RS06735 2cced74f9e80845d7a701f3e01aa10a6 301 SUPERFAMILY SSF53756 53 264 2.2E-6 T 23-04-2016 SD28_RS06735 2cced74f9e80845d7a701f3e01aa10a6 301 Gene3D G3DSA:3.40.50.2000 160 278 3.0E-9 T 23-04-2016 SD28_RS06735 2cced74f9e80845d7a701f3e01aa10a6 301 TIGRFAM TIGR03590 PseG: UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase 1 269 5.7E-72 T 23-04-2016 IPR020023 UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase SD28_RS01495 9bae13fc9557802b8ec6f1ea194d99fd 137 Pfam PF12092 Protein of unknown function (DUF3568) 10 131 5.8E-33 T 23-04-2016 IPR021952 Protein of unknown function DUF3568 SD28_RS07530 5b01e9456f370732e8fb035388828d68 142 Pfam PF10116 Protein required for attachment to host cells 7 132 2.4E-25 T 23-04-2016 IPR019291 Host attachment protein SD28_RS03820 37218fbb0f6ea560abc7e192c9e08d47 355 TIGRFAM TIGR01933 hflK: HflK protein 80 334 2.3E-87 T 23-04-2016 IPR010201 HflK GO:0016021 SD28_RS03820 37218fbb0f6ea560abc7e192c9e08d47 355 PANTHER PTHR10264:SF51 14 336 3.7E-100 T 23-04-2016 IPR010201 HflK GO:0016021 SD28_RS03820 37218fbb0f6ea560abc7e192c9e08d47 355 PANTHER PTHR10264 14 336 3.7E-100 T 23-04-2016 IPR001972 Stomatin family GO:0016020 SD28_RS03820 37218fbb0f6ea560abc7e192c9e08d47 355 SUPERFAMILY SSF117892 113 242 2.75E-18 T 23-04-2016 IPR001107 Band 7 domain SD28_RS03820 37218fbb0f6ea560abc7e192c9e08d47 355 SMART SM00244 78 238 2.5E-27 T 23-04-2016 IPR001107 Band 7 domain SD28_RS03820 37218fbb0f6ea560abc7e192c9e08d47 355 Pfam PF01145 SPFH domain / Band 7 family 82 252 4.4E-21 T 23-04-2016 IPR001107 Band 7 domain SD28_RS02110 22d1e3bfdc8093679d7d7774936c6b70 317 PANTHER PTHR40400 1 315 3.1E-61 T 23-04-2016 IPR010293 Na+-dependent bicarbonate transporter superfamily SD28_RS02110 22d1e3bfdc8093679d7d7774936c6b70 317 Pfam PF05982 Na+-dependent bicarbonate transporter superfamily 7 315 2.0E-89 T 23-04-2016 IPR010293 Na+-dependent bicarbonate transporter superfamily SD28_RS04100 2cfb8314092acd0e78a9345a27d01226 239 PANTHER PTHR36698 3 221 3.7E-28 T 23-04-2016 SD28_RS04100 2cfb8314092acd0e78a9345a27d01226 239 PANTHER PTHR36698:SF2 3 221 3.7E-28 T 23-04-2016 SD28_RS04100 2cfb8314092acd0e78a9345a27d01226 239 Pfam PF02470 MlaD protein 38 115 6.7E-12 T 23-04-2016 IPR003399 Mce/MlaD SD28_RS06615 e3a832c321bcece2fbd51a9d308d29d8 285 PANTHER PTHR11927:SF9 111 253 1.3E-32 T 23-04-2016 SD28_RS06615 e3a832c321bcece2fbd51a9d308d29d8 285 Pfam PF01531 Glycosyl transferase family 11 91 284 4.1E-35 T 23-04-2016 IPR002516 Glycosyl transferase, family 11 GO:0005975|GO:0008107|GO:0016020 KEGG: 00601+2.4.1.69|KEGG: 00603+2.4.1.69|UniPathway: UPA00378 SD28_RS06615 e3a832c321bcece2fbd51a9d308d29d8 285 PANTHER PTHR11927 111 253 1.3E-32 T 23-04-2016 IPR002516 Glycosyl transferase, family 11 GO:0005975|GO:0008107|GO:0016020 KEGG: 00601+2.4.1.69|KEGG: 00603+2.4.1.69|UniPathway: UPA00378 SD28_RS01385 df257f52b59daf8db339dbedd464b465 222 PANTHER PTHR10655:SF17 6 219 5.3E-68 T 23-04-2016 SD28_RS01385 df257f52b59daf8db339dbedd464b465 222 SUPERFAMILY SSF53474 11 220 4.05E-43 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS01385 df257f52b59daf8db339dbedd464b465 222 PANTHER PTHR10655 6 219 5.3E-68 T 23-04-2016 SD28_RS01385 df257f52b59daf8db339dbedd464b465 222 Gene3D G3DSA:3.40.50.1820 5 219 2.4E-59 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS01385 df257f52b59daf8db339dbedd464b465 222 Pfam PF02230 Phospholipase/Carboxylesterase 5 218 1.4E-56 T 23-04-2016 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 SD28_RS03215 034109ce263c7dd22f8f5c38f8905af2 378 PANTHER PTHR12049:SF5 2 355 4.0E-51 T 23-04-2016 SD28_RS03215 034109ce263c7dd22f8f5c38f8905af2 378 SUPERFAMILY SSF53335 6 359 9.26E-79 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SD28_RS03215 034109ce263c7dd22f8f5c38f8905af2 378 PANTHER PTHR12049 2 355 4.0E-51 T 23-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA SD28_RS03215 034109ce263c7dd22f8f5c38f8905af2 378 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 66 304 1.0E-46 T 23-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA SD28_RS07785 994d327aaac91ed5d7b54f5f66a21cc6 133 SUPERFAMILY SSF88723 6 129 3.08E-17 T 23-04-2016 IPR029060 PIN domain-like SD28_RS07785 994d327aaac91ed5d7b54f5f66a21cc6 133 SMART SM00670 4 126 0.0059 T 23-04-2016 IPR002716 PIN domain SD28_RS07785 994d327aaac91ed5d7b54f5f66a21cc6 133 Pfam PF01850 PIN domain 6 125 1.6E-12 T 23-04-2016 IPR002716 PIN domain SD28_RS07785 994d327aaac91ed5d7b54f5f66a21cc6 133 Gene3D G3DSA:3.40.50.1010 4 123 2.8E-10 T 23-04-2016 IPR029060 PIN domain-like SD28_RS00470 ce5bbb76bb1680f1ca991873197aedfd 425 SUPERFAMILY SSF56059 145 332 5.82E-12 T 23-04-2016 SD28_RS00470 ce5bbb76bb1680f1ca991873197aedfd 425 Pfam PF02655 ATP-grasp domain 149 333 1.4E-9 T 23-04-2016 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 SD28_RS00470 ce5bbb76bb1680f1ca991873197aedfd 425 Gene3D G3DSA:3.30.470.20 146 331 3.2E-5 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 SD28_RS06205 fb8d44142a0b54904c9efe5e0e21f261 354 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 6 350 1.9E-79 T 23-04-2016 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 SD28_RS06205 fb8d44142a0b54904c9efe5e0e21f261 354 PANTHER PTHR33529:SF1 1 353 5.7E-57 T 23-04-2016 SD28_RS06205 fb8d44142a0b54904c9efe5e0e21f261 354 PANTHER PTHR33529 1 353 5.7E-57 T 23-04-2016 SD28_RS06205 fb8d44142a0b54904c9efe5e0e21f261 354 Pfam PF03739 Predicted permease YjgP/YjgQ family 8 350 1.1E-45 T 23-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 SD28_RS02230 5f82e951869beb4a695d9fe43ad7221f 584 PANTHER PTHR30365:SF0 439 584 1.1E-208 T 23-04-2016 SD28_RS02230 5f82e951869beb4a695d9fe43ad7221f 584 PANTHER PTHR30365:SF0 1 313 1.1E-208 T 23-04-2016 SD28_RS02230 5f82e951869beb4a695d9fe43ad7221f 584 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 10 567 6.9E-164 T 23-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 SD28_RS02230 5f82e951869beb4a695d9fe43ad7221f 584 PANTHER PTHR30365 439 584 1.1E-208 T 23-04-2016 SD28_RS02230 5f82e951869beb4a695d9fe43ad7221f 584 PANTHER PTHR30365 1 313 1.1E-208 T 23-04-2016 SD28_RS04980 5e9af1b276c15b6de82c37c4fafb8ca9 1003 Pfam PF13700 Domain of unknown function (DUF4158) 5 166 3.1E-24 T 23-04-2016 IPR025296 Domain of unknown function DUF4158 SD28_RS04980 5e9af1b276c15b6de82c37c4fafb8ca9 1003 Pfam PF01526 Tn3 transposase DDE domain 594 982 3.8E-122 T 23-04-2016 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 SD28_RS02820 f24e44476f516d3aae837c709d008e80 528 PANTHER PTHR22595 176 477 3.0E-120 T 23-04-2016 SD28_RS02820 f24e44476f516d3aae837c709d008e80 528 PANTHER PTHR22595 5 82 3.0E-120 T 23-04-2016 SD28_RS02820 f24e44476f516d3aae837c709d008e80 528 PANTHER PTHR22595:SF49 176 477 3.0E-120 T 23-04-2016 SD28_RS02820 f24e44476f516d3aae837c709d008e80 528 PANTHER PTHR22595:SF49 5 82 3.0E-120 T 23-04-2016 SD28_RS02820 f24e44476f516d3aae837c709d008e80 528 Gene3D G3DSA:1.10.530.10 332 469 3.9E-60 T 23-04-2016 SD28_RS02820 f24e44476f516d3aae837c709d008e80 528 Gene3D G3DSA:1.10.530.10 208 276 3.9E-60 T 23-04-2016 SD28_RS02820 f24e44476f516d3aae837c709d008e80 528 Pfam PF00182 Chitinase class I 229 454 3.0E-40 T 23-04-2016 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 SD28_RS02820 f24e44476f516d3aae837c709d008e80 528 SUPERFAMILY SSF53955 209 469 5.34E-59 T 23-04-2016 IPR023346 Lysozyme-like domain SD28_RS00095 a9247000be16b57519d9f97e5e0e8e1d 178 Pfam PF02674 Colicin V production protein 10 151 7.2E-15 T 23-04-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 SD28_RS05955 e38babb3e5928a76ab3bd19aa5f4ec85 209 PANTHER PTHR10285 1 198 1.3E-77 T 23-04-2016 SD28_RS05955 e38babb3e5928a76ab3bd19aa5f4ec85 209 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 2 209 3.6E-82 T 23-04-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 SD28_RS05955 e38babb3e5928a76ab3bd19aa5f4ec85 209 SUPERFAMILY SSF53271 3 207 3.54E-61 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS05955 e38babb3e5928a76ab3bd19aa5f4ec85 209 Gene3D G3DSA:3.40.50.2020 2 209 4.4E-67 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS05955 e38babb3e5928a76ab3bd19aa5f4ec85 209 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 209 41.599 T 23-04-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 SD28_RS05955 e38babb3e5928a76ab3bd19aa5f4ec85 209 Pfam PF14681 Uracil phosphoribosyltransferase 7 208 1.3E-60 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like SD28_RS02825 c02ee710f5bc39c604b8057e5ced8191 607 PANTHER PTHR22595 180 555 4.3E-137 T 23-04-2016 SD28_RS02825 c02ee710f5bc39c604b8057e5ced8191 607 Pfam PF00182 Chitinase class I 307 532 3.4E-39 T 23-04-2016 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 SD28_RS02825 c02ee710f5bc39c604b8057e5ced8191 607 PANTHER PTHR22595:SF49 180 555 4.3E-137 T 23-04-2016 SD28_RS02825 c02ee710f5bc39c604b8057e5ced8191 607 Gene3D G3DSA:1.10.530.10 410 546 1.3E-62 T 23-04-2016 SD28_RS02825 c02ee710f5bc39c604b8057e5ced8191 607 Gene3D G3DSA:1.10.530.10 286 354 1.3E-62 T 23-04-2016 SD28_RS02825 c02ee710f5bc39c604b8057e5ced8191 607 Gene3D G3DSA:2.60.40.290 29 108 7.6E-5 T 23-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 SD28_RS02825 c02ee710f5bc39c604b8057e5ced8191 607 SUPERFAMILY SSF53955 287 547 3.94E-64 T 23-04-2016 IPR023346 Lysozyme-like domain SD28_RS04860 d6949863d4a3fc01c98e9f26b7fcadd4 65 Pfam PF02609 Exonuclease VII small subunit 8 59 3.2E-5 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 SD28_RS04860 d6949863d4a3fc01c98e9f26b7fcadd4 65 Gene3D G3DSA:1.10.287.1040 3 62 4.4E-4 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 SD28_RS03965 f169100ea1262713a65b0b9a3b6eb9ee 98 Gene3D G3DSA:3.30.160.100 1 93 9.1E-34 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 SD28_RS03965 f169100ea1262713a65b0b9a3b6eb9ee 98 SUPERFAMILY SSF69754 1 97 1.7E-32 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 SD28_RS03965 f169100ea1262713a65b0b9a3b6eb9ee 98 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 93 8.4E-24 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 SD28_RS03965 f169100ea1262713a65b0b9a3b6eb9ee 98 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 96 1.2E-28 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 SD28_RS03965 f169100ea1262713a65b0b9a3b6eb9ee 98 PANTHER PTHR33231 1 92 6.0E-26 T 23-04-2016 SD28_RS00600 83b368beb05b85e42a93e4976c7cf181 254 PANTHER PTHR30188:SF4 25 252 6.0E-87 T 23-04-2016 SD28_RS00600 83b368beb05b85e42a93e4976c7cf181 254 Pfam PF02405 Permease MlaE 39 248 3.6E-70 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 SD28_RS00600 83b368beb05b85e42a93e4976c7cf181 254 PANTHER PTHR30188 25 252 6.0E-87 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 SD28_RS00600 83b368beb05b85e42a93e4976c7cf181 254 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 21 251 1.7E-76 T 23-04-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria SD28_RS05180 9643574313a6b8a8be7f43fafdea01d3 195 Gene3D G3DSA:3.10.580.10 41 171 1.2E-6 T 23-04-2016 SD28_RS05180 9643574313a6b8a8be7f43fafdea01d3 195 Pfam PF00571 CBS domain 124 175 9.1E-4 T 23-04-2016 IPR000644 CBS domain SD28_RS05180 9643574313a6b8a8be7f43fafdea01d3 195 SUPERFAMILY SSF54631 42 168 1.46E-9 T 23-04-2016 SD28_RS05150 d5034be60199aa936d0ab21e3c9927d4 246 Pfam PF06314 Acetoacetate decarboxylase (ADC) 12 245 6.9E-70 T 23-04-2016 IPR010451 Acetoacetate decarboxylase GO:0016829 KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 SD28_RS05150 d5034be60199aa936d0ab21e3c9927d4 246 SUPERFAMILY SSF160104 1 246 7.06E-71 T 23-04-2016 SD28_RS05150 d5034be60199aa936d0ab21e3c9927d4 246 Gene3D G3DSA:2.40.400.10 14 245 1.2E-77 T 23-04-2016 IPR023375 Acetoacetate decarboxylase beta barrel domain KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 SD28_RS05815 9b7989f583eddc657b20ec7d9ecaa583 204 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 36 191 1.2E-11 T 23-04-2016 SD28_RS05815 9b7989f583eddc657b20ec7d9ecaa583 204 Gene3D G3DSA:3.40.50.720 3 202 1.1E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS05815 9b7989f583eddc657b20ec7d9ecaa583 204 SUPERFAMILY SSF51735 3 200 4.13E-24 T 23-04-2016 IPR016040 NAD(P)-binding domain SD28_RS04930 c212bd9b82d9c0e8e1b8e62b711bc445 277 Pfam PF01925 Sulfite exporter TauE/SafE 11 270 6.7E-42 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 SD28_RS04930 c212bd9b82d9c0e8e1b8e62b711bc445 277 PANTHER PTHR30269:SF23 4 275 5.9E-69 T 23-04-2016 SD28_RS04930 c212bd9b82d9c0e8e1b8e62b711bc445 277 PANTHER PTHR30269 4 275 5.9E-69 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 SD28_RS00360 7d06f66edabd0a5c21e924a05ee7a92c 205 Hamap MF_00165 Thymidylate kinase [tmk]. 4 205 27.387 T 23-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 SD28_RS00360 7d06f66edabd0a5c21e924a05ee7a92c 205 ProSitePatterns PS01331 Thymidylate kinase signature. 94 106 - T 23-04-2016 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 SD28_RS00360 7d06f66edabd0a5c21e924a05ee7a92c 205 SUPERFAMILY SSF52540 1 204 7.16E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00360 7d06f66edabd0a5c21e924a05ee7a92c 205 PANTHER PTHR10344 1 205 3.1E-59 T 23-04-2016 SD28_RS00360 7d06f66edabd0a5c21e924a05ee7a92c 205 Gene3D G3DSA:3.40.50.300 2 204 1.4E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase SD28_RS00360 7d06f66edabd0a5c21e924a05ee7a92c 205 Pfam PF02223 Thymidylate kinase 8 197 1.3E-50 T 23-04-2016 SD28_RS00360 7d06f66edabd0a5c21e924a05ee7a92c 205 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 197 1.0E-57 T 23-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 SD28_RS03100 8e7e06d6a370b62210b5325822a5535e 73 Pfam PF11903 ParD-like antitoxin of type II bacterial toxin-antitoxin system 4 62 4.0E-19 T 23-04-2016 IPR021831 ParD-like antitoxin of type II bacterial toxin-antitoxin system SD28_RS05490 afe9bed409d4d26429ebcdf51dc333ef 127 Gene3D G3DSA:3.40.190.10 60 122 0.001 T 23-04-2016 SD28_RS00140 f74c4179bad5d398be5508eae71501ca 170 SUPERFAMILY SSF64288 9 162 2.12E-23 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain SD28_RS00140 f74c4179bad5d398be5508eae71501ca 170 Gene3D G3DSA:3.40.1410.10 9 162 6.9E-28 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain SD28_RS00140 f74c4179bad5d398be5508eae71501ca 170 Pfam PF04345 Chorismate lyase 6 168 4.0E-18 T 23-04-2016 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|UniPathway: UPA00232 SD28_RS01445 ab38a96a881cb3a0d61fce0cc7e5b4d6 302 SUPERFAMILY SSF53187 30 182 1.72E-30 T 23-04-2016 SD28_RS01445 ab38a96a881cb3a0d61fce0cc7e5b4d6 302 Gene3D G3DSA:3.40.630.10 10 210 8.2E-57 T 23-04-2016 SD28_RS01445 ab38a96a881cb3a0d61fce0cc7e5b4d6 302 Gene3D G3DSA:3.40.630.10 247 301 8.2E-57 T 23-04-2016 SD28_RS01445 ab38a96a881cb3a0d61fce0cc7e5b4d6 302 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 77 176 1.2E-6 T 23-04-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 SD28_RS02875 53283fedafc7424ddb773236d2413b2e 103 SUPERFAMILY SSF51182 41 99 3.86E-17 T 23-04-2016 IPR011051 RmlC-like cupin domain SD28_RS02875 53283fedafc7424ddb773236d2413b2e 103 Pfam PF07883 Cupin domain 47 99 1.4E-10 T 23-04-2016 IPR013096 Cupin 2, conserved barrel SD28_RS02875 53283fedafc7424ddb773236d2413b2e 103 Gene3D G3DSA:2.60.120.10 16 101 3.6E-29 T 23-04-2016 IPR014710 RmlC-like jelly roll fold SD28_RS02510 07ad35924a7724fdff359067dd01031f 785 Gene3D G3DSA:2.60.40.670 162 230 1.5E-5 T 23-04-2016 IPR000601 PKD domain SD28_RS04825 07ad35924a7724fdff359067dd01031f 785 Gene3D G3DSA:2.60.40.670 162 230 1.5E-5 T 23-04-2016 IPR000601 PKD domain SD28_RS03980 9e2a758f0d889242d428d78d8a5d9a73 189 SUPERFAMILY SSF53098 2 186 3.79E-63 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS03980 9e2a758f0d889242d428d78d8a5d9a73 189 Pfam PF01351 Ribonuclease HII 4 179 9.3E-38 T 23-04-2016 IPR024567 Ribonuclease HII/HIII domain SD28_RS03980 9e2a758f0d889242d428d78d8a5d9a73 189 Hamap MF_00052_B Ribonuclease HII [rnhB]. 2 181 34.476 T 23-04-2016 IPR022898 Ribonuclease HII GO:0004523 SD28_RS03980 9e2a758f0d889242d428d78d8a5d9a73 189 Gene3D G3DSA:3.30.420.10 2 138 1.3E-39 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 SD28_RS03980 9e2a758f0d889242d428d78d8a5d9a73 189 PANTHER PTHR10954 1 187 3.8E-64 T 23-04-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 SD28_RS01225 a1065d1ee27f0c55251d013f6b3a470a 126 Pfam PF14107 Domain of unknown function (DUF4280) 5 120 1.9E-27 T 23-04-2016 IPR025460 Protein of unknown function DUF4280 SD28_RS07055 5d4a369e2c3a4101a201d0060de4aae8 198 Pfam PF13413 Helix-turn-helix domain 8 68 3.6E-9 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 SD28_RS07055 5d4a369e2c3a4101a201d0060de4aae8 198 SUPERFAMILY SSF47413 2 42 3.1E-5 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 SD28_RS07055 5d4a369e2c3a4101a201d0060de4aae8 198 Gene3D G3DSA:1.10.260.40 5 70 8.8E-6 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 SD28_RS05520 fd586837e752a774f977aa8c36037118 186 Pfam PF05137 Fimbrial assembly protein (PilN) 101 172 3.5E-5 T 23-04-2016 IPR007813 Fimbrial assembly PilN SD28_RS07350 b2d1727f14ff7ed764f3bf96ee8f6767 204 Pfam PF13511 Domain of unknown function (DUF4124) 21 67 1.2E-5 T 23-04-2016 IPR025392 Domain of unknown function DUF4124 SD28_RS03890 fc947eb23b82f54ff687645af25f618c 370 Gene3D G3DSA:3.40.1190.20 5 360 6.4E-61 T 23-04-2016 IPR029056 Ribokinase-like SD28_RS03890 fc947eb23b82f54ff687645af25f618c 370 Pfam PF00294 pfkB family carbohydrate kinase 38 343 4.0E-36 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB SD28_RS03890 fc947eb23b82f54ff687645af25f618c 370 SUPERFAMILY SSF53613 4 343 1.09E-55 T 23-04-2016 IPR029056 Ribokinase-like SD28_RS03890 fc947eb23b82f54ff687645af25f618c 370 PANTHER PTHR10584 234 353 1.3E-49 T 23-04-2016 SD28_RS03890 fc947eb23b82f54ff687645af25f618c 370 PANTHER PTHR10584 39 215 1.3E-49 T 23-04-2016 SD28_RS04720 6131ce1eb7365737eb23c4e900b5470f 208 PANTHER PTHR30353:SF0 1 207 3.7E-52 T 23-04-2016 SD28_RS04720 6131ce1eb7365737eb23c4e900b5470f 208 PANTHER PTHR30353 1 207 3.7E-52 T 23-04-2016 IPR032818 DedA family SD28_RS04720 6131ce1eb7365737eb23c4e900b5470f 208 Pfam PF09335 SNARE associated Golgi protein 43 167 3.5E-18 T 23-04-2016 IPR032816 SNARE associated Golgi protein SD28_RS07535 785d108af1730e8a8f8f891c774601b3 115 Gene3D G3DSA:3.40.50.1820 1 64 9.1E-6 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold SD28_RS07805 aaa8783c776eba24dd58305abe4c8653 119 Gene3D G3DSA:1.10.287.770 42 93 4.6E-4 T 23-04-2016 SD28_RS00725 ac3e51bf63ec44bbadd803e4cb5b21f4 123 Pfam PF03899 ATP synthase I chain 12 105 1.7E-7 T 23-04-2016 IPR005598 ATP synthase protein I SD28_RS06980 7c44e0857656ba58e16aac7049dd4761 253 SUPERFAMILY SSF57850 5 68 7.32E-16 T 23-04-2016 SD28_RS06980 7c44e0857656ba58e16aac7049dd4761 253 Pfam PF13639 Ring finger domain 19 61 3.7E-10 T 23-04-2016 IPR001841 Zinc finger, RING-type GO:0005515|GO:0008270 SD28_RS06980 7c44e0857656ba58e16aac7049dd4761 253 SMART SM00184 20 60 1.6E-4 T 23-04-2016 IPR001841 Zinc finger, RING-type GO:0005515|GO:0008270 SD28_RS06980 7c44e0857656ba58e16aac7049dd4761 253 Gene3D G3DSA:3.30.40.10 16 61 1.2E-12 T 23-04-2016 IPR013083 Zinc finger, RING/FYVE/PHD-type SD28_RS07575 277e280702745f16437716ff90f6ddec 195 PANTHER PTHR38693:SF1 1 195 9.8E-16 T 23-04-2016 SD28_RS07575 277e280702745f16437716ff90f6ddec 195 PANTHER PTHR38693 1 195 9.8E-16 T 23-04-2016 SD28_RS02905 f9f8f8a15068b9ba82e59b8522709590 277 PIRSF PIRSF012524 1 277 4.9E-67 T 23-04-2016 IPR014464 Conserved virulence factor B SD28_RS02905 f9f8f8a15068b9ba82e59b8522709590 277 SMART SM00316 144 206 4.4 T 23-04-2016 IPR022967 RNA-binding domain, S1 SD28_RS02905 f9f8f8a15068b9ba82e59b8522709590 277 SMART SM00316 68 130 2.4 T 23-04-2016 IPR022967 RNA-binding domain, S1 SD28_RS02905 f9f8f8a15068b9ba82e59b8522709590 277 Pfam PF13509 S1 domain 4 64 1.2E-11 T 23-04-2016 SD28_RS02905 f9f8f8a15068b9ba82e59b8522709590 277 PANTHER PTHR37296 1 277 5.1E-80 T 23-04-2016 SD28_RS02965 d117eb4b9aed60f730063a871f403e0f 256 Gene3D G3DSA:3.60.110.10 1 248 7.6E-53 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 SD28_RS02965 d117eb4b9aed60f730063a871f403e0f 256 PANTHER PTHR23088:SF28 1 243 2.3E-64 T 23-04-2016 SD28_RS02965 d117eb4b9aed60f730063a871f403e0f 256 PANTHER PTHR23088 1 243 2.3E-64 T 23-04-2016 SD28_RS02965 d117eb4b9aed60f730063a871f403e0f 256 Pfam PF00795 Carbon-nitrogen hydrolase 5 235 7.5E-31 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 SD28_RS02965 d117eb4b9aed60f730063a871f403e0f 256 SUPERFAMILY SSF56317 1 246 6.54E-56 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 SD28_RS03860 fe468eefe11fb2e74515c1e0f011f484 237 PANTHER PTHR31223 25 229 1.1E-81 T 23-04-2016 SD28_RS03860 fe468eefe11fb2e74515c1e0f011f484 237 PANTHER PTHR31223:SF1 25 229 1.1E-81 T 23-04-2016 SD28_RS03860 fe468eefe11fb2e74515c1e0f011f484 237 SUPERFAMILY SSF102405 23 220 5.49E-56 T 23-04-2016 SD28_RS03860 fe468eefe11fb2e74515c1e0f011f484 237 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 47 221 6.3E-41 T 23-04-2016 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG SD28_RS03860 fe468eefe11fb2e74515c1e0f011f484 237 Pfam PF03641 Possible lysine decarboxylase 89 218 5.7E-31 T 23-04-2016 IPR031100 LOG family SD28_RS03860 fe468eefe11fb2e74515c1e0f011f484 237 Gene3D G3DSA:3.40.50.450 28 229 1.5E-58 T 23-04-2016 SD28_RS02910 456924298ff910692fd59d470633f92a 211 PANTHER PTHR30086 1 210 1.3E-26 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 SD28_RS02910 456924298ff910692fd59d470633f92a 211 Pfam PF01810 LysE type translocator 13 202 1.5E-28 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 SD28_RS06585 09f3dc44a0739af2879a415b808e6872 143 Pfam PF08897 Domain of unknown function (DUF1841) 6 138 3.9E-48 T 23-04-2016 IPR014993 Protein of unknown function DUF1841 SD28_RS01130 ef8887805847d8588ec71bdfd8854c5d 257 Gene3D G3DSA:3.30.40.10 168 249 1.4E-8 T 23-04-2016 IPR013083 Zinc finger, RING/FYVE/PHD-type SD28_RS01130 ef8887805847d8588ec71bdfd8854c5d 257 Pfam PF01363 FYVE zinc finger 172 248 1.1E-8 T 23-04-2016 IPR000306 FYVE zinc finger GO:0046872 SD28_RS01130 ef8887805847d8588ec71bdfd8854c5d 257 SUPERFAMILY SSF57903 172 252 1.25E-8 T 23-04-2016 IPR011011 Zinc finger, FYVE/PHD-type SD28_RS01130 ef8887805847d8588ec71bdfd8854c5d 257 SMART SM00064 167 251 0.0089 T 23-04-2016 IPR000306 FYVE zinc finger GO:0046872 SD28_RS05135 de179d8344c1d73df4ec9b8c1ae5c41a 471 SUPERFAMILY SSF51695 155 470 7.85E-36 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 SD28_RS05135 de179d8344c1d73df4ec9b8c1ae5c41a 471 SMART SM00148 166 345 0.0033 T 23-04-2016 IPR000909 Phosphatidylinositol-specific phospholipase C, X domain SD28_RS05135 de179d8344c1d73df4ec9b8c1ae5c41a 471 PANTHER PTHR13593 155 468 1.9E-15 T 23-04-2016 SD28_RS05135 de179d8344c1d73df4ec9b8c1ae5c41a 471 Gene3D G3DSA:3.20.20.190 155 470 7.6E-40 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 SD28_RS07765 793f8a58f6bb72e9218f25223c6ae28a 602 Gene3D G3DSA:1.25.40.20 368 489 9.4E-5 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain SD28_RS02010 810ae9c86d2c9832a27221d7e85bed3a 200 PANTHER PTHR33269:SF1 6 192 8.8E-33 T 23-04-2016 SD28_RS02010 810ae9c86d2c9832a27221d7e85bed3a 200 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 18 160 4.9E-23 T 23-04-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 SD28_RS02010 810ae9c86d2c9832a27221d7e85bed3a 200 PANTHER PTHR33269 6 192 8.8E-33 T 23-04-2016 SD28_RS04605 8eeb56f6a90634db8a2f0b64dd42f353 314 Gene3D G3DSA:3.50.50.60 7 107 8.2E-9 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS04605 8eeb56f6a90634db8a2f0b64dd42f353 314 SUPERFAMILY SSF51905 189 259 9.55E-10 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS04605 8eeb56f6a90634db8a2f0b64dd42f353 314 SUPERFAMILY SSF51905 19 147 9.55E-10 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SD28_RS04605 8eeb56f6a90634db8a2f0b64dd42f353 314 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 2 236 1.5E-40 T 23-04-2016 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase SD28_RS00310 dd743145b013414add10277ae9fc3f43 211 PANTHER PTHR38035 14 211 2.5E-12 T 23-04-2016 SD28_RS00310 dd743145b013414add10277ae9fc3f43 211 Gene3D G3DSA:1.25.40.10 106 193 1.1E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS00310 dd743145b013414add10277ae9fc3f43 211 Pfam PF09976 Tetratricopeptide repeat-like domain 14 196 2.4E-19 T 23-04-2016 IPR018704 Tetratricopeptide repeat-like domain SD28_RS00310 dd743145b013414add10277ae9fc3f43 211 SUPERFAMILY SSF48452 107 192 3.41E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS00310 dd743145b013414add10277ae9fc3f43 211 SUPERFAMILY SSF48452 37 78 3.41E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 SD28_RS07780 601fb95100cc3c7443bcce0fa7d3aa8b 131 Pfam PF04883 Bacteriophage HK97-gp10, putative tail-component 8 105 2.3E-5 T 23-04-2016 IPR010064 Bacteriophage HK97-gp10, putative tail-component SD28_RS07430 dfe02e4a85ccc70a41f33e3bf3bcd9e0 450 Pfam PF13520 Amino acid permease 12 424 1.2E-47 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS07430 dfe02e4a85ccc70a41f33e3bf3bcd9e0 450 PANTHER PTHR11785 17 412 3.7E-44 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS07430 dfe02e4a85ccc70a41f33e3bf3bcd9e0 450 PIRSF PIRSF006060 6 450 2.3E-41 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 SD28_RS07430 dfe02e4a85ccc70a41f33e3bf3bcd9e0 450 PANTHER PTHR11785:SF216 17 412 3.7E-44 T 23-04-2016 SD28_RS04300 1f893b0468f95096efd06a564fa9c617 265 Pfam PF08378 Nuclease-related domain 88 210 5.6E-20 T 23-04-2016 IPR011528 Nuclease-related domain, NERD SD28_RS06725 e27ac0abe6c5f4c0b531795c9052df8a 308 SUPERFAMILY SSF51197 129 292 9.48E-11 T 23-04-2016 SD28_RS02245 bcb463e7261af77768ee5d0a7eb4746c 304 SUPERFAMILY SSF117289 42 294 1.96E-7 T 23-04-2016 SD28_RS06845 6b09a45ed9c7817a08ef8107bd2eee61 472 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 175 456 1.2E-53 T 23-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 SD28_RS06845 6b09a45ed9c7817a08ef8107bd2eee61 472 PIRSF PIRSF005943 1 472 1.4E-170 T 23-04-2016 IPR016471 Nicotinamide phosphoribosyl transferase SD28_RS06845 6b09a45ed9c7817a08ef8107bd2eee61 472 PANTHER PTHR11098:SF2 6 470 1.2E-179 T 23-04-2016 SD28_RS06845 6b09a45ed9c7817a08ef8107bd2eee61 472 PANTHER PTHR11098 6 470 1.2E-179 T 23-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 SD28_RS06845 6b09a45ed9c7817a08ef8107bd2eee61 472 SUPERFAMILY SSF51690 144 469 2.16E-40 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 SD28_RS07240 bc194ba59c666916c6e1661ba819c310 493 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 68 492 4.6E-138 T 23-04-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath SD28_RS07240 bc194ba59c666916c6e1661ba819c310 493 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 56 491 2.0E-133 T 23-04-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath SD28_RS07240 bc194ba59c666916c6e1661ba819c310 493 PANTHER PTHR35565 1 493 4.7E-130 T 23-04-2016 SD28_RS00285 2ac4d3e3b7167e06f9dee309b79905df 536 Pfam PF11685 Protein of unknown function (DUF3281) 2 137 8.4E-18 T 23-04-2016 IPR021699 Protein of unknown function DUF3281 SD28_RS00275 f4bd5308aaf924837aea4f54cac93d3d 132 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 47 97 2.4E-17 T 23-04-2016 IPR027805 Transposase, Helix-turn-helix domain SD28_RS06495 5f238ce5ad43c5a03609ef1a4c6271c6 398 TIGRFAM TIGR04332 gamma_Glu_sys: poly-gamma-glutamate system protein 16 281 8.0E-70 T 23-04-2016 IPR027602 Poly-gamma-glutamate system protein SD28_RS00205 a37ee7df73eb425ca8134cee6c651b79 239 PANTHER PTHR30625:SF3 3 228 2.9E-56 T 23-04-2016 SD28_RS00205 a37ee7df73eb425ca8134cee6c651b79 239 Pfam PF01618 MotA/TolQ/ExbB proton channel family 84 209 8.4E-37 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 SD28_RS00205 a37ee7df73eb425ca8134cee6c651b79 239 PANTHER PTHR30625 3 228 2.9E-56 T 23-04-2016 SD28_RS00205 a37ee7df73eb425ca8134cee6c651b79 239 TIGRFAM TIGR02796 tolQ: protein TolQ 7 219 3.4E-80 T 23-04-2016 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 SD28_RS00170 9522b6d4874a2c0f8eb06b219c93872d 140 Pfam PF12092 Protein of unknown function (DUF3568) 7 133 7.6E-6 T 23-04-2016 IPR021952 Protein of unknown function DUF3568 SD28_RS04275 99611c58105455cc9e8a261f0e6457e6 302 Pfam PF13515 Fusaric acid resistance protein-like 37 170 3.8E-8 T 23-04-2016 SD28_RS01920 17ccdb761954f5fb67ac0417febc0a41 117 Pfam PF15569 Immunity protein 40 20 109 1.1E-20 T 23-04-2016 IPR029080 Immunity protein 40 SD28_RS07285 e9c908df3e03f37cc6b558ab111163af 195 Pfam PF09850 Type VI secretion system protein DotU 28 194 2.8E-14 T 23-04-2016 IPR017732 Type IV / VI secretion system, DotU SD28_RS00795 a59f24933d7b93aaaa7bc4895e2321a5 138 PANTHER PTHR42641:SF2 6 130 1.4E-32 T 23-04-2016 SD28_RS00795 a59f24933d7b93aaaa7bc4895e2321a5 138 Pfam PF05232 Chlorhexidine efflux transporter 2 61 6.6E-18 T 23-04-2016 IPR007896 Chlorhexidine efflux transporter SD28_RS00795 a59f24933d7b93aaaa7bc4895e2321a5 138 Pfam PF05232 Chlorhexidine efflux transporter 74 132 1.2E-19 T 23-04-2016 IPR007896 Chlorhexidine efflux transporter SD28_RS00795 a59f24933d7b93aaaa7bc4895e2321a5 138 PANTHER PTHR42641 6 130 1.4E-32 T 23-04-2016 SD28_RS03410 55274c83a303184ba1ca51ab21991d4a 620 TIGRFAM TIGR03546 TIGR03546: TIGR03546 family protein 2 146 6.5E-32 T 23-04-2016 IPR019935 Conserved hypothetical protein CHP03546 SD28_RS07295 551397ef903d3e367cc76c0e9e5350b9 712 Pfam PF14107 Domain of unknown function (DUF4280) 593 706 4.1E-12 T 23-04-2016 IPR025460 Protein of unknown function DUF4280 SD28_RS03315 f15d5838eba04d6dbe1eaa1047100d64 283 PIRSF PIRSF021898 2 283 7.1E-97 T 23-04-2016 IPR016797 Uncharacterised conserved protein UCP021898 SD28_RS00150 d6f7707547716d4fbbbe82553283e624 129 Pfam PF04241 Protein of unknown function (DUF423) 16 106 1.1E-17 T 23-04-2016 IPR006696 Protein of unknown function DUF423 SD28_RS00290 8c49ae64c9eedccd64def51ad00e7fc6 498 SUPERFAMILY SSF55909 114 329 5.56E-7 T 23-04-2016 SD28_RS00935 dd5d3838f5685998e246f1039866c941 331 PANTHER PTHR11101 6 331 7.0E-91 T 23-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 SD28_RS00935 dd5d3838f5685998e246f1039866c941 331 Pfam PF01384 Phosphate transporter family 20 161 6.0E-36 T 23-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 SD28_RS00935 dd5d3838f5685998e246f1039866c941 331 Pfam PF01384 Phosphate transporter family 150 316 1.1E-46 T 23-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 SD28_RS06680 37c03a598578f10c51ed6e86d754a80b 132 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 47 97 2.4E-17 T 23-04-2016 IPR027805 Transposase, Helix-turn-helix domain SD28_RS05195 df8ca8ea41b78b65762f8746d3be03c8 270 Pfam PF01925 Sulfite exporter TauE/SafE 13 234 2.4E-12 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 SD28_RS07415 d7d81996f6e308871886105144f15b9d 141 Gene3D G3DSA:1.10.10.10 15 62 5.3E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain SD28_RS01245 dbb6802b0622671b575fde1827096982 483 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 56 214 2.3E-16 T 23-04-2016 SD28_RS06675 7399268884747ae2652d88b7dfe7f95f 115 Pfam PF13359 DDE superfamily endonuclease 8 100 2.3E-11 T 23-04-2016 IPR027806 Harbinger transposase-derived nuclease domain SD28_RS06655 ba398377af036122833146228d2602a5 174 Pfam PF01609 Transposase DDE domain 65 131 1.4E-11 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 SD28_RS06060 14ffb60a87d8ff2ab728f75c1e024ca9 166 Pfam PF02620 Uncharacterized ACR, COG1399 60 166 2.6E-12 T 23-04-2016 IPR003772 Protein of unknown function DUF177 SD28_RS04160 8c9a71477fdbaaef27de6b56d05cb23b 129 Pfam PF11743 Protein of unknown function (DUF3301) 5 97 1.2E-18 T 23-04-2016 IPR021732 Protein of unknown function DUF3301 SD28_RS04380 9ff37f488102be4bde9ff09da1b2f8fe 270 Pfam PF10977 Protein of unknown function (DUF2797) 34 266 9.1E-88 T 23-04-2016 IPR021246 Protein of unknown function DUF2797 SD28_RS04095 6e79f5c11777ec4ccab59960794f58de 223 Gene3D G3DSA:3.40.50.10610 46 129 8.8E-4 T 23-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component SD28_RS01415 d33004a75ea7c531764535fbcab801d8 551 Pfam PF12097 Protein of unknown function (DUF3573) 58 415 1.7E-141 T 23-04-2016 IPR021956 Protein of unknown function DUF3573 SD28_RS07635 b44830aadbc5cbca4b98c39826937ff9 550 Pfam PF12097 Protein of unknown function (DUF3573) 7 415 2.7E-163 T 23-04-2016 IPR021956 Protein of unknown function DUF3573 SD28_RS07630 d9b9f7f09b9907936b73769c5b6edec1 467 Pfam PF12097 Protein of unknown function (DUF3573) 89 321 3.2E-77 T 23-04-2016 IPR021956 Protein of unknown function DUF3573