locus-tag class description AYI_RS00005 PF00308 Bacterial dnaA protein AYI_RS00005 PF11638 DnaA N-terminal domain AYI_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix AYI_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AYI_RS00010 PF02767 DNA polymerase III beta subunit, central domain AYI_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AYI_RS00015 PF00083 Sugar (and other) transporter AYI_RS00025 PF00999 Sodium/hydrogen exchanger family AYI_RS00030 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYI_RS00030 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYI_RS00030 PF00205 Thiamine pyrophosphate enzyme, central domain AYI_RS00040 PF01343 Peptidase family S49 AYI_RS00050 PF01206 Sulfurtransferase TusA AYI_RS00050 PF00581 Rhodanese-like domain AYI_RS00055 PF02556 Preprotein translocase subunit SecB AYI_RS00060 PF00154 recA bacterial DNA recombination protein AYI_RS00065 PF02631 RecX family AYI_RS00070 PF00436 Single-strand binding protein family AYI_RS00075 PF00871 Acetokinase family AYI_RS00080 PF01515 Phosphate acetyl/butaryl transferase AYI_RS00080 PF07085 DRTGG domain AYI_RS00090 PF13358 DDE superfamily endonuclease AYI_RS00105 PF08946 Osmosensory transporter coiled coil AYI_RS00105 PF00083 Sugar (and other) transporter AYI_RS00110 PF01336 OB-fold nucleic acid binding domain AYI_RS00110 PF00152 tRNA synthetases class II (D, K and N) AYI_RS00110 PF02938 GAD domain AYI_RS00125 PF13358 DDE superfamily endonuclease AYI_RS00145 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYI_RS00145 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYI_RS00150 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYI_RS00150 PF02142 MGS-like domain AYI_RS00150 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AYI_RS00155 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AYI_RS00155 PF00117 Glutamine amidotransferase class-I AYI_RS00165 PF05724 Thiopurine S-methyltransferase (TPMT) AYI_RS00170 PF01979 Amidohydrolase family AYI_RS00200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYI_RS00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYI_RS00210 PF03466 LysR substrate binding domain AYI_RS00220 PF01609 Transposase DDE domain AYI_RS00235 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AYI_RS00240 PF01180 Dihydroorotate dehydrogenase AYI_RS00245 PF02153 Prephenate dehydrogenase AYI_RS00245 PF01817 Chorismate mutase type II AYI_RS00250 PF01817 Chorismate mutase type II AYI_RS00250 PF02153 Prephenate dehydrogenase AYI_RS00255 PF02580 D-Tyr-tRNA(Tyr) deacylase AYI_RS00265 PF00251 Glycosyl hydrolases family 32 N-terminal domain AYI_RS00265 PF08244 Glycosyl hydrolases family 32 C terminal AYI_RS00270 PF13358 DDE superfamily endonuclease AYI_RS00290 PF00881 Nitroreductase family AYI_RS00300 PF03222 Tryptophan/tyrosine permease family AYI_RS00305 PF02527 rRNA small subunit methyltransferase G AYI_RS00310 PF01168 Alanine racemase, N-terminal domain AYI_RS00325 PF07690 Major Facilitator Superfamily AYI_RS00335 PF13580 SIS domain AYI_RS00340 PF04355 SmpA / OmlA family AYI_RS00345 PF01649 Ribosomal protein S20 AYI_RS00350 PF00679 Elongation factor G C-terminus AYI_RS00350 PF00009 Elongation factor Tu GTP binding domain AYI_RS00350 PF06421 GTP-binding protein LepA C-terminus AYI_RS00350 PF03144 Elongation factor Tu domain 2 AYI_RS00365 PF01327 Polypeptide deformylase AYI_RS00370 PF00885 6,7-dimethyl-8-ribityllumazine synthase AYI_RS00375 PF00925 GTP cyclohydrolase II AYI_RS00375 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AYI_RS00380 PF00677 Lumazine binding domain AYI_RS00385 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYI_RS00385 PF01872 RibD C-terminal domain AYI_RS00390 PF01609 Transposase DDE domain AYI_RS00395 PF13358 DDE superfamily endonuclease AYI_RS00420 PF06965 Na+/H+ antiporter 1 AYI_RS00425 PF03372 Endonuclease/Exonuclease/phosphatase family AYI_RS00430 PF01553 Acyltransferase AYI_RS00440 PF11953 Domain of unknown function (DUF3470) AYI_RS00440 PF00037 4Fe-4S binding domain AYI_RS00455 PF02222 ATP-grasp domain AYI_RS00465 PF00004 ATPase family associated with various cellular activities (AAA) AYI_RS00465 PF07724 AAA domain (Cdc48 subfamily) AYI_RS00465 PF17871 AAA lid domain AYI_RS00465 PF02861 Clp amino terminal domain, pathogenicity island component AYI_RS00465 PF10431 C-terminal, D2-small domain, of ClpB protein AYI_RS00480 PF00290 Tryptophan synthase alpha chain AYI_RS00485 PF00291 Pyridoxal-phosphate dependent enzyme AYI_RS00490 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AYI_RS00495 PF00654 Voltage gated chloride channel AYI_RS00515 PF04973 Nicotinamide mononucleotide transporter AYI_RS00525 PF13358 DDE superfamily endonuclease AYI_RS00530 PF07690 Major Facilitator Superfamily AYI_RS00545 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 AYI_RS00550 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AYI_RS00650 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYI_RS00650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYI_RS00660 PF13358 DDE superfamily endonuclease AYI_RS00670 PF01063 Amino-transferase class IV AYI_RS00675 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AYI_RS00675 PF00391 PEP-utilising enzyme, mobile domain AYI_RS00675 PF02896 PEP-utilising enzyme, TIM barrel domain AYI_RS00680 PF07670 Nucleoside recognition AYI_RS00680 PF07664 Ferrous iron transport protein B C terminus AYI_RS00680 PF17910 FeoB cytosolic helical domain AYI_RS00680 PF02421 Ferrous iron transport protein B AYI_RS00690 PF13358 DDE superfamily endonuclease AYI_RS00710 PF05686 Glycosyl transferase family 90 AYI_RS00715 PF00773 RNB domain AYI_RS00720 PF02230 Phospholipase/Carboxylesterase AYI_RS00725 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AYI_RS00725 PF03900 Porphobilinogen deaminase, C-terminal domain AYI_RS00760 PF00005 ABC transporter AYI_RS00775 PF00132 Bacterial transferase hexapeptide (six repeats) AYI_RS00780 PF03550 Outer membrane lipoprotein LolB AYI_RS00785 PF00288 GHMP kinases N terminal domain AYI_RS00805 PF13358 DDE superfamily endonuclease AYI_RS00825 PF01384 Phosphate transporter family AYI_RS00840 PF02626 Carboxyltransferase domain, subdomain A and B AYI_RS00865 PF13358 DDE superfamily endonuclease AYI_RS00880 PF00929 Exonuclease AYI_RS00885 PF01132 Elongation factor P (EF-P) OB domain AYI_RS00885 PF09285 Elongation factor P, C-terminal AYI_RS00885 PF08207 Elongation factor P (EF-P) KOW-like domain AYI_RS00895 PF03279 Bacterial lipid A biosynthesis acyltransferase AYI_RS00900 PF03279 Bacterial lipid A biosynthesis acyltransferase AYI_RS00905 PF14849 YidC periplasmic domain AYI_RS00905 PF02096 60Kd inner membrane protein AYI_RS00910 PF01809 Putative membrane protein insertion efficiency factor AYI_RS00915 PF00825 Ribonuclease P AYI_RS00920 PF00468 Ribosomal protein L34 AYI_RS00930 PF08501 Shikimate dehydrogenase substrate binding domain AYI_RS00930 PF01488 Shikimate / quinate 5-dehydrogenase AYI_RS00930 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AYI_RS00940 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYI_RS00960 PF00271 Helicase conserved C-terminal domain AYI_RS00960 PF08463 EcoEI R protein C-terminal AYI_RS00960 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AYI_RS00960 PF04851 Type III restriction enzyme, res subunit AYI_RS00965 PF00582 Universal stress protein family AYI_RS00980 PF13358 DDE superfamily endonuclease AYI_RS00985 PF07690 Major Facilitator Superfamily AYI_RS00990 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYI_RS01000 PF02322 Cytochrome bd terminal oxidase subunit II AYI_RS01005 PF01654 Cytochrome bd terminal oxidase subunit I AYI_RS01010 PF07690 Major Facilitator Superfamily AYI_RS01015 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AYI_RS01015 PF06481 COX Aromatic Rich Motif AYI_RS01020 PF00115 Cytochrome C and Quinol oxidase polypeptide I AYI_RS01025 PF00510 Cytochrome c oxidase subunit III AYI_RS01030 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AYI_RS01035 PF01040 UbiA prenyltransferase family AYI_RS01040 PF00132 Bacterial transferase hexapeptide (six repeats) AYI_RS01040 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AYI_RS01050 PF08543 Phosphomethylpyrimidine kinase AYI_RS01060 PF17863 AAA lid domain AYI_RS01060 PF07726 ATPase family associated with various cellular activities (AAA) AYI_RS01080 PF07584 Aerotolerance regulator N-terminal AYI_RS01080 PF00092 von Willebrand factor type A domain AYI_RS01095 PF01470 Pyroglutamyl peptidase AYI_RS01110 PF08264 Anticodon-binding domain of tRNA AYI_RS01110 PF00133 tRNA synthetases class I (I, L, M and V) AYI_RS01110 PF10458 Valyl tRNA synthetase tRNA binding arm AYI_RS01130 PF01070 FMN-dependent dehydrogenase AYI_RS01135 PF00881 Nitroreductase family AYI_RS01140 PF00293 NUDIX domain AYI_RS01145 PF10415 Fumarase C C-terminus AYI_RS01145 PF00206 Lyase AYI_RS01150 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYI_RS01160 PF01609 Transposase DDE domain AYI_RS01165 PF13520 Amino acid permease AYI_RS01180 PF00186 Dihydrofolate reductase AYI_RS01185 PF00318 Ribosomal protein S2 AYI_RS01190 PF00889 Elongation factor TS AYI_RS01195 PF00696 Amino acid kinase family AYI_RS01200 PF01765 Ribosome recycling factor AYI_RS01205 PF01255 Putative undecaprenyl diphosphate synthase AYI_RS01215 PF00692 dUTPase AYI_RS01220 PF01066 CDP-alcohol phosphatidyltransferase AYI_RS01225 PF00164 Ribosomal protein S12/S23 AYI_RS01230 PF00177 Ribosomal protein S7p/S5e AYI_RS01235 PF03144 Elongation factor Tu domain 2 AYI_RS01235 PF00679 Elongation factor G C-terminus AYI_RS01235 PF14492 Elongation Factor G, domain II AYI_RS01235 PF03764 Elongation factor G, domain IV AYI_RS01235 PF00009 Elongation factor Tu GTP binding domain AYI_RS01240 PF00338 Ribosomal protein S10p/S20e AYI_RS01245 PF00297 Ribosomal protein L3 AYI_RS01250 PF00573 Ribosomal protein L4/L1 family AYI_RS01255 PF00276 Ribosomal protein L23 AYI_RS01260 PF03947 Ribosomal Proteins L2, C-terminal domain AYI_RS01260 PF00181 Ribosomal Proteins L2, RNA binding domain AYI_RS01265 PF00203 Ribosomal protein S19 AYI_RS01270 PF00237 Ribosomal protein L22p/L17e AYI_RS01275 PF00189 Ribosomal protein S3, C-terminal domain AYI_RS01275 PF07650 KH domain AYI_RS01280 PF00252 Ribosomal protein L16p/L10e AYI_RS01285 PF00831 Ribosomal L29 protein AYI_RS01290 PF00366 Ribosomal protein S17 AYI_RS01295 PF00238 Ribosomal protein L14p/L23e AYI_RS01300 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AYI_RS01305 PF00673 ribosomal L5P family C-terminus AYI_RS01305 PF00281 Ribosomal protein L5 AYI_RS01310 PF00253 Ribosomal protein S14p/S29e AYI_RS01315 PF00410 Ribosomal protein S8 AYI_RS01320 PF00347 Ribosomal protein L6 AYI_RS01325 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AYI_RS01330 PF03719 Ribosomal protein S5, C-terminal domain AYI_RS01330 PF00333 Ribosomal protein S5, N-terminal domain AYI_RS01335 PF00327 Ribosomal protein L30p/L7e AYI_RS01340 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AYI_RS01345 PF00344 SecY translocase AYI_RS01350 PF00444 Ribosomal protein L36 AYI_RS01355 PF00416 Ribosomal protein S13/S18 AYI_RS01360 PF00411 Ribosomal protein S11 AYI_RS01365 PF00163 Ribosomal protein S4/S9 N-terminal domain AYI_RS01365 PF01479 S4 domain AYI_RS01370 PF01000 RNA polymerase Rpb3/RpoA insert domain AYI_RS01370 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AYI_RS01370 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AYI_RS01375 PF01196 Ribosomal protein L17 AYI_RS01390 PF12918 TcdB toxin N-terminal helical domain AYI_RS01390 PF12920 TcdA/TcdB pore forming domain AYI_RS01390 PF11713 Peptidase C80 family AYI_RS01390 PF12919 TcdA/TcdB catalytic glycosyltransferase domain AYI_RS01395 PF13358 DDE superfamily endonuclease AYI_RS01405 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYI_RS01405 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYI_RS01410 PF13358 DDE superfamily endonuclease AYI_RS01415 PF00183 Hsp90 protein AYI_RS01420 PF13358 DDE superfamily endonuclease AYI_RS01445 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYI_RS01445 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYI_RS01450 PF01609 Transposase DDE domain AYI_RS01460 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AYI_RS01460 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AYI_RS01465 PF13520 Amino acid permease AYI_RS01475 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYI_RS01480 PF09335 SNARE associated Golgi protein AYI_RS01485 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYI_RS01485 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYI_RS01490 PF01066 CDP-alcohol phosphatidyltransferase AYI_RS01500 PF13520 Amino acid permease AYI_RS01505 PF00226 DnaJ domain AYI_RS01505 PF01556 DnaJ C terminal domain AYI_RS01515 PF03222 Tryptophan/tyrosine permease family AYI_RS01525 PF13291 ACT domain AYI_RS01525 PF04607 Region found in RelA / SpoT proteins AYI_RS01525 PF02824 TGS domain AYI_RS01545 PF04445 Putative SAM-dependent methyltransferase AYI_RS01550 PF02899 Phage integrase, N-terminal SAM-like domain AYI_RS01550 PF00589 Phage integrase family AYI_RS01555 PF03222 Tryptophan/tyrosine permease family AYI_RS01570 PF02556 Preprotein translocase subunit SecB AYI_RS01575 PF01624 MutS domain I AYI_RS01575 PF00488 MutS domain V AYI_RS01575 PF05188 MutS domain II AYI_RS01575 PF05190 MutS family domain IV AYI_RS01575 PF05192 MutS domain III AYI_RS01580 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AYI_RS01600 PF13580 SIS domain AYI_RS01610 PF00004 ATPase family associated with various cellular activities (AAA) AYI_RS01610 PF05362 Lon protease (S16) C-terminal proteolytic domain AYI_RS01610 PF02190 ATP-dependent protease La (LON) substrate-binding domain AYI_RS01615 PF01609 Transposase DDE domain AYI_RS01625 PF00999 Sodium/hydrogen exchanger family AYI_RS01635 PF00579 tRNA synthetases class I (W and Y) AYI_RS01650 PF01121 Dephospho-CoA kinase AYI_RS01660 PF00456 Transketolase, thiamine diphosphate binding domain AYI_RS01660 PF17831 Pyruvate dehydrogenase E1 component middle domain AYI_RS01665 PF02817 e3 binding domain AYI_RS01665 PF00364 Biotin-requiring enzyme AYI_RS01665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYI_RS01670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYI_RS01670 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYI_RS01680 PF13358 DDE superfamily endonuclease AYI_RS01685 PF00293 NUDIX domain AYI_RS01705 PF00860 Permease family AYI_RS01710 PF00155 Aminotransferase class I and II AYI_RS01725 PF00691 OmpA family AYI_RS01725 PF01389 OmpA-like transmembrane domain AYI_RS01735 PF02401 LytB protein AYI_RS01740 PF07736 Chorismate mutase type I AYI_RS01745 PF01066 CDP-alcohol phosphatidyltransferase AYI_RS01755 PF01618 MotA/TolQ/ExbB proton channel family AYI_RS01760 PF02472 Biopolymer transport protein ExbD/TolR AYI_RS01770 PF07676 WD40-like Beta Propeller Repeat AYI_RS01780 PF00691 OmpA family AYI_RS01780 PF01389 OmpA-like transmembrane domain AYI_RS01785 PF00919 Uncharacterized protein family UPF0004 AYI_RS01785 PF04055 Radical SAM superfamily AYI_RS01790 PF00583 Acetyltransferase (GNAT) family AYI_RS01800 PF13358 DDE superfamily endonuclease AYI_RS01810 PF00875 DNA photolyase AYI_RS01810 PF03441 FAD binding domain of DNA photolyase AYI_RS01815 PF03441 FAD binding domain of DNA photolyase AYI_RS01815 PF00875 DNA photolyase AYI_RS01820 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AYI_RS01830 PF01758 Sodium Bile acid symporter family AYI_RS01860 PF04241 Protein of unknown function (DUF423) AYI_RS01865 PF13358 DDE superfamily endonuclease AYI_RS01880 PF01040 UbiA prenyltransferase family AYI_RS01890 PF03725 3' exoribonuclease family, domain 2 AYI_RS01890 PF01138 3' exoribonuclease family, domain 1 AYI_RS01910 PF01435 Peptidase family M48 AYI_RS01915 PF04011 LemA family AYI_RS01930 PF00403 Heavy-metal-associated domain AYI_RS01935 PF01609 Transposase DDE domain AYI_RS01960 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AYI_RS01960 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AYI_RS01970 PF18073 Rubredoxin metal binding domain AYI_RS01985 PF01264 Chorismate synthase AYI_RS01995 PF01641 SelR domain AYI_RS01995 PF01625 Peptide methionine sulfoxide reductase AYI_RS02000 PF00080 Copper/zinc superoxide dismutase (SODC) AYI_RS02010 PF00324 Amino acid permease AYI_RS02015 PF00483 Nucleotidyl transferase AYI_RS02015 PF01050 Mannose-6-phosphate isomerase AYI_RS02025 PF00155 Aminotransferase class I and II AYI_RS02035 PF02463 RecF/RecN/SMC N terminal domain AYI_RS02055 PF00114 Pilin (bacterial filament) AYI_RS02055 PF07963 Prokaryotic N-terminal methylation motif AYI_RS02060 PF01569 PAP2 superfamily AYI_RS02065 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AYI_RS02065 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AYI_RS02070 PF02769 AIR synthase related protein, C-terminal domain AYI_RS02070 PF00586 AIR synthase related protein, N-terminal domain AYI_RS02075 PF01259 SAICAR synthetase AYI_RS02080 PF00551 Formyl transferase AYI_RS02085 PF00731 AIR carboxylase AYI_RS02090 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AYI_RS02090 PF02222 ATP-grasp domain AYI_RS02095 PF01609 Transposase DDE domain AYI_RS02100 PF01300 Telomere recombination AYI_RS02105 PF04279 Intracellular septation protein A AYI_RS02115 PF02685 Glucokinase AYI_RS02120 PF01209 ubiE/COQ5 methyltransferase family AYI_RS02130 PF03109 ABC1 family AYI_RS02135 PF01230 HIT domain AYI_RS02145 PF00156 Phosphoribosyl transferase domain AYI_RS02150 PF08241 Methyltransferase domain AYI_RS02160 PF01565 FAD binding domain AYI_RS02160 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AYI_RS02165 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYI_RS02170 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AYI_RS02170 PF01926 50S ribosome-binding GTPase AYI_RS02180 PF01609 Transposase DDE domain AYI_RS02190 PF02021 Uncharacterised protein family UPF0102 AYI_RS02195 PF01432 Peptidase family M3 AYI_RS02200 PF04430 Protein of unknown function (DUF498/DUF598) AYI_RS02230 PF01751 Toprim domain AYI_RS02230 PF13368 Topoisomerase C-terminal repeat AYI_RS02230 PF01131 DNA topoisomerase AYI_RS02235 PF13614 AAA domain AYI_RS02240 PF17762 HTH domain found in ParB protein AYI_RS02240 PF02195 ParB-like nuclease domain AYI_RS02245 PF00117 Glutamine amidotransferase class-I AYI_RS02245 PF00958 GMP synthase C terminal domain AYI_RS02245 PF02540 NAD synthase AYI_RS02260 PF01728 FtsJ-like methyltransferase AYI_RS02270 PF01252 Signal peptidase (SPase) II AYI_RS02275 PF00133 tRNA synthetases class I (I, L, M and V) AYI_RS02275 PF06827 Zinc finger found in FPG and IleRS AYI_RS02275 PF08264 Anticodon-binding domain of tRNA AYI_RS02280 PF06574 FAD synthetase AYI_RS02280 PF01687 Riboflavin kinase AYI_RS02285 PF00390 Malic enzyme, N-terminal domain AYI_RS02285 PF03949 Malic enzyme, NAD binding domain AYI_RS02305 PF13358 DDE superfamily endonuclease AYI_RS02310 PF01609 Transposase DDE domain AYI_RS02320 PF01205 Uncharacterized protein family UPF0029 AYI_RS02320 PF09186 Domain of unknown function (DUF1949) AYI_RS02325 PF07690 Major Facilitator Superfamily AYI_RS02330 PF01588 Putative tRNA binding domain AYI_RS02330 PF08264 Anticodon-binding domain of tRNA AYI_RS02330 PF09334 tRNA synthetases class I (M) AYI_RS02385 PF02163 Peptidase family M50 AYI_RS02395 PF02666 Phosphatidylserine decarboxylase AYI_RS02405 PF01467 Cytidylyltransferase-like AYI_RS02405 PF00293 NUDIX domain AYI_RS02410 PF00132 Bacterial transferase hexapeptide (six repeats) AYI_RS02410 PF12804 MobA-like NTP transferase domain AYI_RS02415 PF01380 SIS domain AYI_RS02425 PF01165 Ribosomal protein S21 AYI_RS02430 PF00313 'Cold-shock' DNA-binding domain AYI_RS02440 PF00557 Metallopeptidase family M24 AYI_RS02455 PF00521 DNA gyrase/topoisomerase IV, subunit A AYI_RS02455 PF03989 DNA gyrase C-terminal domain, beta-propeller AYI_RS02460 PF01048 Phosphorylase superfamily AYI_RS02475 PF01464 Transglycosylase SLT domain AYI_RS02475 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYI_RS02480 PF01609 Transposase DDE domain AYI_RS02500 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AYI_RS02500 PF14579 Helix-hairpin-helix motif AYI_RS02500 PF01336 OB-fold nucleic acid binding domain AYI_RS02500 PF07733 Bacterial DNA polymerase III alpha NTPase domain AYI_RS02500 PF02811 PHP domain AYI_RS02505 PF01327 Polypeptide deformylase AYI_RS02515 PF02687 FtsX-like permease family AYI_RS02515 PF12704 MacB-like periplasmic core domain AYI_RS02520 PF00005 ABC transporter AYI_RS02525 PF01276 Orn/Lys/Arg decarboxylase, major domain AYI_RS02525 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AYI_RS02525 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AYI_RS02530 PF08669 Glycine cleavage T-protein C-terminal barrel domain AYI_RS02530 PF01571 Aminomethyltransferase folate-binding domain AYI_RS02535 PF01597 Glycine cleavage H-protein AYI_RS02540 PF02347 Glycine cleavage system P-protein AYI_RS02545 PF02347 Glycine cleavage system P-protein AYI_RS02550 PF08501 Shikimate dehydrogenase substrate binding domain AYI_RS02550 PF01488 Shikimate / quinate 5-dehydrogenase AYI_RS02550 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AYI_RS02555 PF03714 Bacterial pullanase-associated domain AYI_RS02555 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AYI_RS02555 PF00128 Alpha amylase, catalytic domain AYI_RS02560 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AYI_RS02560 PF02806 Alpha amylase, C-terminal all-beta domain AYI_RS02560 PF00128 Alpha amylase, catalytic domain AYI_RS02565 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYI_RS02565 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYI_RS02565 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYI_RS02565 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYI_RS02570 PF00483 Nucleotidyl transferase AYI_RS02575 PF08323 Starch synthase catalytic domain AYI_RS02575 PF00534 Glycosyl transferases group 1 AYI_RS02580 PF00343 Carbohydrate phosphorylase AYI_RS02585 PF02446 4-alpha-glucanotransferase AYI_RS02590 PF02091 Glycyl-tRNA synthetase alpha subunit AYI_RS02595 PF08245 Mur ligase middle domain AYI_RS02595 PF02875 Mur ligase family, glutamate ligase domain AYI_RS02595 PF01225 Mur ligase family, catalytic domain AYI_RS02605 PF08245 Mur ligase middle domain AYI_RS02605 PF01225 Mur ligase family, catalytic domain AYI_RS02605 PF02875 Mur ligase family, glutamate ligase domain AYI_RS02625 PF08544 GHMP kinases C terminal AYI_RS02625 PF00288 GHMP kinases N terminal domain AYI_RS02630 PF14821 Threonine synthase N terminus AYI_RS02630 PF00291 Pyridoxal-phosphate dependent enzyme AYI_RS02635 PF02675 S-adenosylmethionine decarboxylase AYI_RS02640 PF17284 Spermidine synthase tetramerisation domain AYI_RS02660 PF13358 DDE superfamily endonuclease AYI_RS02675 PF00149 Calcineurin-like phosphoesterase AYI_RS02680 PF00156 Phosphoribosyl transferase domain AYI_RS02685 PF08245 Mur ligase middle domain AYI_RS02685 PF02875 Mur ligase family, glutamate ligase domain AYI_RS02685 PF01225 Mur ligase family, catalytic domain AYI_RS02690 PF00588 SpoU rRNA Methylase family AYI_RS02690 PF08032 RNA 2'-O ribose methyltransferase substrate binding AYI_RS02695 PF13358 DDE superfamily endonuclease AYI_RS02725 PF02470 MlaD protein AYI_RS02730 PF02405 Permease MlaE AYI_RS02735 PF00005 ABC transporter AYI_RS02740 PF03776 Septum formation topological specificity factor MinE AYI_RS02745 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AYI_RS02750 PF03775 Septum formation inhibitor MinC, C-terminal domain AYI_RS02750 PF05209 Septum formation inhibitor MinC, N-terminal domain AYI_RS02755 PF00471 Ribosomal protein L33 AYI_RS02760 PF00830 Ribosomal L28 family AYI_RS02765 PF13627 Prokaryotic lipoprotein-attachment site AYI_RS02770 PF00270 DEAD/DEAH box helicase AYI_RS02770 PF00271 Helicase conserved C-terminal domain AYI_RS02770 PF17191 RecG wedge domain AYI_RS02780 PF05683 Fumarase C-terminus AYI_RS02800 PF08774 VRR-NUC domain AYI_RS02800 PF04851 Type III restriction enzyme, res subunit AYI_RS02805 PF03167 Uracil DNA glycosylase superfamily AYI_RS02820 PF00521 DNA gyrase/topoisomerase IV, subunit A AYI_RS02820 PF03989 DNA gyrase C-terminal domain, beta-propeller AYI_RS02825 PF13288 DXP reductoisomerase C-terminal domain AYI_RS02825 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AYI_RS02825 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AYI_RS02830 PF01103 Surface antigen AYI_RS02830 PF07244 Surface antigen variable number repeat AYI_RS02840 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AYI_RS02840 PF00132 Bacterial transferase hexapeptide (six repeats) AYI_RS02845 PF07977 FabA-like domain AYI_RS02850 PF00132 Bacterial transferase hexapeptide (six repeats) AYI_RS02850 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AYI_RS02855 PF02684 Lipid-A-disaccharide synthetase AYI_RS02870 PF00933 Glycosyl hydrolase family 3 N terminal domain AYI_RS02870 PF01915 Glycosyl hydrolase family 3 C-terminal domain AYI_RS02880 PF03976 Polyphosphate kinase 2 (PPK2) AYI_RS02885 PF01066 CDP-alcohol phosphatidyltransferase AYI_RS02890 PF00348 Polyprenyl synthetase AYI_RS02895 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AYI_RS02900 PF01725 Ham1 family AYI_RS02905 PF14748 Pyrroline-5-carboxylate reductase dimerisation AYI_RS02905 PF03807 NADP oxidoreductase coenzyme F420-dependent AYI_RS02910 PF04303 PrpF protein AYI_RS02915 PF04303 PrpF protein AYI_RS02920 PF00072 Response regulator receiver domain AYI_RS02920 PF00486 Transcriptional regulatory protein, C terminal AYI_RS02925 PF10502 Signal peptidase, peptidase S26 AYI_RS02930 PF14622 Ribonuclease-III-like AYI_RS02930 PF00035 Double-stranded RNA binding motif AYI_RS02935 PF01509 TruB family pseudouridylate synthase (N terminal domain) AYI_RS02935 PF16198 tRNA pseudouridylate synthase B C-terminal domain AYI_RS02940 PF00773 RNB domain AYI_RS02940 PF08206 Ribonuclease B OB domain AYI_RS02940 PF00575 S1 RNA binding domain AYI_RS02940 PF08461 Ribonuclease R winged-helix domain AYI_RS02940 PF17876 Cold shock domain AYI_RS02985 PF16736 Single Cache-like AYI_RS02985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYI_RS02985 PF00512 His Kinase A (phospho-acceptor) domain AYI_RS02985 PF00989 PAS fold AYI_RS03000 PF01609 Transposase DDE domain AYI_RS03035 PF01609 Transposase DDE domain AYI_RS03050 PF02423 Ornithine cyclodeaminase/mu-crystallin family AYI_RS03055 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AYI_RS03065 PF00083 Sugar (and other) transporter AYI_RS03075 PF02803 Thiolase, C-terminal domain AYI_RS03075 PF00108 Thiolase, N-terminal domain AYI_RS03080 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYI_RS03080 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYI_RS03080 PF00378 Enoyl-CoA hydratase/isomerase AYI_RS03085 PF02770 Acyl-CoA dehydrogenase, middle domain AYI_RS03085 PF09317 Domain of unknown function (DUF1974) AYI_RS03085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYI_RS03085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYI_RS03090 PF13193 AMP-binding enzyme C-terminal domain AYI_RS03090 PF00501 AMP-binding enzyme AYI_RS03095 PF03960 ArsC family AYI_RS03100 PF03971 Monomeric isocitrate dehydrogenase AYI_RS03110 PF04408 Helicase associated domain (HA2) AYI_RS03110 PF00270 DEAD/DEAH box helicase AYI_RS03110 PF11898 Domain of unknown function (DUF3418) AYI_RS03110 PF00271 Helicase conserved C-terminal domain AYI_RS03110 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AYI_RS03115 PF01609 Transposase DDE domain AYI_RS03120 PF02719 Polysaccharide biosynthesis protein AYI_RS03125 PF02397 Bacterial sugar transferase AYI_RS03135 PF13477 Glycosyl transferase 4-like AYI_RS03135 PF00534 Glycosyl transferases group 1 AYI_RS03140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYI_RS03140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYI_RS03140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYI_RS03145 PF01370 NAD dependent epimerase/dehydratase family AYI_RS03160 PF13537 Glutamine amidotransferase domain AYI_RS03160 PF00733 Asparagine synthase AYI_RS03165 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AYI_RS03170 PF18216 N-formyltransferase dimerization C-terminal domain AYI_RS03170 PF00551 Formyl transferase AYI_RS03180 PF00535 Glycosyl transferase family 2 AYI_RS03185 PF00483 Nucleotidyl transferase AYI_RS03200 PF13358 DDE superfamily endonuclease AYI_RS03205 PF00483 Nucleotidyl transferase AYI_RS03205 PF01050 Mannose-6-phosphate isomerase AYI_RS03210 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYI_RS03210 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYI_RS03210 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYI_RS03210 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYI_RS03215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYI_RS03215 PF07497 Rho termination factor, RNA-binding domain AYI_RS03215 PF07498 Rho termination factor, N-terminal domain AYI_RS03220 PF00085 Thioredoxin AYI_RS03225 PF02541 Ppx/GppA phosphatase family AYI_RS03230 PF01609 Transposase DDE domain AYI_RS03240 PF12002 MgsA AAA+ ATPase C terminal AYI_RS03240 PF16193 AAA C-terminal domain AYI_RS03240 PF00004 ATPase family associated with various cellular activities (AAA) AYI_RS03245 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AYI_RS03245 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AYI_RS03265 PF01026 TatD related DNase AYI_RS03275 PF01925 Sulfite exporter TauE/SafE AYI_RS03280 PF01609 Transposase DDE domain AYI_RS03285 PF00005 ABC transporter AYI_RS03290 PF01061 ABC-2 type transporter AYI_RS03295 PF00535 Glycosyl transferase family 2 AYI_RS03300 PF01513 ATP-NAD kinase AYI_RS03305 PF01810 LysE type translocator AYI_RS03310 PF02390 Putative methyltransferase AYI_RS03325 PF13358 DDE superfamily endonuclease AYI_RS03340 PF11127 Protein of unknown function (DUF2892) AYI_RS03340 PF00581 Rhodanese-like domain AYI_RS03350 PF00753 Metallo-beta-lactamase superfamily AYI_RS03355 PF01925 Sulfite exporter TauE/SafE AYI_RS03365 PF03692 Putative zinc- or iron-chelating domain AYI_RS03380 PF01029 NusB family AYI_RS03385 PF00795 Carbon-nitrogen hydrolase AYI_RS03410 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYI_RS03410 PF03129 Anticodon binding domain AYI_RS03410 PF04073 Aminoacyl-tRNA editing domain AYI_RS03435 PF02657 Fe-S metabolism associated domain AYI_RS03455 PF16123 Hydroxyacylglutathione hydrolase C-terminus AYI_RS03455 PF00753 Metallo-beta-lactamase superfamily AYI_RS03500 PF00892 EamA-like transporter family AYI_RS03505 PF01645 Conserved region in glutamate synthase AYI_RS03510 PF17946 RecC C-terminal domain AYI_RS03520 PF00270 DEAD/DEAH box helicase AYI_RS03520 PF17191 RecG wedge domain AYI_RS03520 PF13749 Putative ATP-dependent DNA helicase recG C-terminal AYI_RS03525 PF12705 PD-(D/E)XK nuclease superfamily AYI_RS03525 PF00580 UvrD/REP helicase N-terminal domain AYI_RS03525 PF13361 UvrD-like helicase C-terminal domain AYI_RS03530 PF13538 UvrD-like helicase C-terminal domain AYI_RS03535 PF03309 Type III pantothenate kinase AYI_RS03540 PF02261 Aspartate decarboxylase AYI_RS03545 PF02569 Pantoate-beta-alanine ligase AYI_RS03550 PF02548 Ketopantoate hydroxymethyltransferase AYI_RS03560 PF00533 BRCA1 C Terminus (BRCT) domain AYI_RS03560 PF01653 NAD-dependent DNA ligase adenylation domain AYI_RS03560 PF03120 NAD-dependent DNA ligase OB-fold domain AYI_RS03560 PF12826 Helix-hairpin-helix motif AYI_RS03560 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AYI_RS03575 PF00528 Binding-protein-dependent transport system inner membrane component AYI_RS03580 PF00528 Binding-protein-dependent transport system inner membrane component AYI_RS03585 PF08402 TOBE domain AYI_RS03585 PF00005 ABC transporter AYI_RS03590 PF13358 DDE superfamily endonuclease AYI_RS03605 PF03358 NADPH-dependent FMN reductase AYI_RS03615 PF02540 NAD synthase AYI_RS03620 PF02321 Outer membrane efflux protein AYI_RS03625 PF13533 Biotin-lipoyl like AYI_RS03630 PF07690 Major Facilitator Superfamily AYI_RS03640 PF13193 AMP-binding enzyme C-terminal domain AYI_RS03640 PF00501 AMP-binding enzyme AYI_RS03645 PF00854 POT family AYI_RS03650 PF04452 RNA methyltransferase AYI_RS03670 PF00005 ABC transporter AYI_RS03675 PF02405 Permease MlaE AYI_RS03680 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AYI_RS03685 PF00849 RNA pseudouridylate synthase AYI_RS03685 PF01479 S4 domain AYI_RS03690 PF13525 Outer membrane lipoprotein AYI_RS03705 PF00464 Serine hydroxymethyltransferase AYI_RS03710 PF04751 Protein of unknown function (DUF615) AYI_RS03735 PF00534 Glycosyl transferases group 1 AYI_RS03740 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family AYI_RS03750 PF01171 PP-loop family AYI_RS03750 PF11734 TilS substrate C-terminal domain AYI_RS03750 PF09179 TilS substrate binding domain AYI_RS03755 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYI_RS03755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYI_RS03760 PF00303 Thymidylate synthase AYI_RS03765 PF01790 Prolipoprotein diacylglyceryl transferase AYI_RS03770 PF12111 Polyribonucleotide phosphorylase C terminal AYI_RS03770 PF00575 S1 RNA binding domain AYI_RS03770 PF10150 Ribonuclease E/G family AYI_RS03775 PF00266 Aminotransferase class-V AYI_RS03785 PF11967 Recombination protein O N terminal AYI_RS03785 PF02565 Recombination protein O C terminal AYI_RS03790 PF09335 SNARE associated Golgi protein AYI_RS03795 PF09335 SNARE associated Golgi protein AYI_RS03810 PF03695 Uncharacterised protein family (UPF0149) AYI_RS03815 PF01494 FAD binding domain AYI_RS03820 PF01494 FAD binding domain AYI_RS03830 PF02547 Queuosine biosynthesis protein AYI_RS03840 PF02592 Putative vitamin uptake transporter AYI_RS03845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYI_RS03860 PF13358 DDE superfamily endonuclease AYI_RS03865 PF01431 Peptidase family M13 AYI_RS03865 PF05649 Peptidase family M13 AYI_RS03875 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AYI_RS03890 PF13932 GidA associated domain AYI_RS03890 PF01134 Glucose inhibited division protein A AYI_RS03910 PF00106 short chain dehydrogenase AYI_RS03915 PF00929 Exonuclease AYI_RS03915 PF08411 Exonuclease C-terminal AYI_RS03920 PF00271 Helicase conserved C-terminal domain AYI_RS03920 PF17757 UvrB interaction domain AYI_RS03920 PF04851 Type III restriction enzyme, res subunit AYI_RS03920 PF12344 Ultra-violet resistance protein B AYI_RS03920 PF02151 UvrB/uvrC motif AYI_RS03930 PF01177 Asp/Glu/Hydantoin racemase AYI_RS03935 PF07690 Major Facilitator Superfamily AYI_RS03940 PF01609 Transposase DDE domain AYI_RS03960 PF07687 Peptidase dimerisation domain AYI_RS03960 PF01546 Peptidase family M20/M25/M40 AYI_RS03965 PF13742 OB-fold nucleic acid binding domain AYI_RS03965 PF02601 Exonuclease VII, large subunit AYI_RS03985 PF01171 PP-loop family AYI_RS03990 PF01668 SmpB protein AYI_RS03995 PF03364 Polyketide cyclase / dehydrase and lipid transport AYI_RS04000 PF03658 RnfH family Ubiquitin AYI_RS04005 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AYI_RS04005 PF01266 FAD dependent oxidoreductase AYI_RS04025 PF03144 Elongation factor Tu domain 2 AYI_RS04025 PF00009 Elongation factor Tu GTP binding domain AYI_RS04025 PF00679 Elongation factor G C-terminus AYI_RS04085 PF01926 50S ribosome-binding GTPase AYI_RS04090 PF01979 Amidohydrolase family AYI_RS04095 PF00814 Glycoprotease family AYI_RS04105 PF00155 Aminotransferase class I and II AYI_RS04110 PF07650 KH domain AYI_RS04110 PF01926 50S ribosome-binding GTPase AYI_RS04130 PF05191 Adenylate kinase, active site lid AYI_RS04155 PF00263 Bacterial type II and III secretion system protein AYI_RS04155 PF11741 AMIN domain AYI_RS04155 PF03958 Bacterial type II/III secretion system short domain AYI_RS04155 PF07660 Secretin and TonB N terminus short domain AYI_RS04160 PF01202 Shikimate kinase AYI_RS04165 PF01761 3-dehydroquinate synthase AYI_RS04180 PF03937 Flavinator of succinate dehydrogenase AYI_RS04185 PF14850 DNA-binding domain of Proline dehydrogenase AYI_RS04185 PF00171 Aldehyde dehydrogenase family AYI_RS04185 PF01619 Proline dehydrogenase AYI_RS04185 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AYI_RS04190 PF13520 Amino acid permease AYI_RS04195 PF07690 Major Facilitator Superfamily AYI_RS04200 PF04127 DNA / pantothenate metabolism flavoprotein AYI_RS04200 PF02441 Flavoprotein AYI_RS04245 PF01609 Transposase DDE domain AYI_RS04250 PF00762 Ferrochelatase AYI_RS04270 PF00482 Type II secretion system (T2SS), protein F AYI_RS04275 PF00437 Type II/IV secretion system protein AYI_RS04275 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AYI_RS04285 PF18146 Damage-inducible protein CinA KH domain AYI_RS04285 PF02464 Competence-damaged protein AYI_RS04285 PF00994 Probable molybdopterin binding domain AYI_RS04290 PF08443 RimK-like ATP-grasp domain AYI_RS04290 PF02875 Mur ligase family, glutamate ligase domain AYI_RS04290 PF08245 Mur ligase middle domain AYI_RS04295 PF02875 Mur ligase family, glutamate ligase domain AYI_RS04295 PF08245 Mur ligase middle domain AYI_RS04295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYI_RS04300 PF02542 YgbB family AYI_RS04305 PF00581 Rhodanese-like domain AYI_RS04315 PF03222 Tryptophan/tyrosine permease family AYI_RS04320 PF03180 NLPA lipoprotein AYI_RS04325 PF00005 ABC transporter AYI_RS04325 PF09383 NIL domain AYI_RS04330 PF02660 Glycerol-3-phosphate acyltransferase AYI_RS04335 PF11685 Protein of unknown function (DUF3281) AYI_RS04340 PF11685 Protein of unknown function (DUF3281) AYI_RS04350 PF01702 Queuine tRNA-ribosyltransferase AYI_RS04355 PF03466 LysR substrate binding domain AYI_RS04355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYI_RS04365 PF00857 Isochorismatase family AYI_RS04375 PF02699 Preprotein translocase subunit AYI_RS04380 PF13721 SecD export protein N-terminal TM region AYI_RS04380 PF02355 Protein export membrane protein AYI_RS04380 PF07549 SecD/SecF GG Motif AYI_RS04385 PF07549 SecD/SecF GG Motif AYI_RS04385 PF02355 Protein export membrane protein AYI_RS04395 PF04542 Sigma-70 region 2 AYI_RS04395 PF00140 Sigma-70 factor, region 1.2 AYI_RS04395 PF04545 Sigma-70, region 4 AYI_RS04400 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYI_RS04410 PF00075 RNase H AYI_RS04415 PF00710 Asparaginase, N-terminal AYI_RS04415 PF17763 Glutaminase/Asparaginase C-terminal domain AYI_RS04420 PF00484 Carbonic anhydrase AYI_RS04430 PF00291 Pyridoxal-phosphate dependent enzyme AYI_RS04435 PF00301 Rubredoxin AYI_RS04445 PF01609 Transposase DDE domain AYI_RS04450 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AYI_RS04455 PF00375 Sodium:dicarboxylate symporter family AYI_RS04460 PF01380 SIS domain AYI_RS04465 PF00083 Sugar (and other) transporter AYI_RS04485 PF01609 Transposase DDE domain AYI_RS04490 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AYI_RS04490 PF00728 Glycosyl hydrolase family 20, catalytic domain AYI_RS04490 PF03173 Putative carbohydrate binding domain AYI_RS04490 PF02838 Glycosyl hydrolase family 20, domain 2 AYI_RS04515 PF04551 GcpE protein AYI_RS04520 PF02578 Multi-copper polyphenol oxidoreductase laccase AYI_RS04525 PF00557 Metallopeptidase family M24 AYI_RS04525 PF01321 Creatinase/Prolidase N-terminal domain AYI_RS04530 PF01223 DNA/RNA non-specific endonuclease AYI_RS04550 PF00795 Carbon-nitrogen hydrolase AYI_RS04555 PF00571 CBS domain AYI_RS04555 PF03471 Transporter associated domain AYI_RS04560 PF02130 Uncharacterized protein family UPF0054 AYI_RS04565 PF02562 PhoH-like protein AYI_RS04570 PF00919 Uncharacterized protein family UPF0004 AYI_RS04570 PF01938 TRAM domain AYI_RS04570 PF04055 Radical SAM superfamily AYI_RS04575 PF01596 O-methyltransferase AYI_RS04585 PF00265 Thymidine kinase AYI_RS04595 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYI_RS04595 PF05698 Bacterial trigger factor protein (TF) C-terminus AYI_RS04595 PF05697 Bacterial trigger factor protein (TF) AYI_RS04600 PF00574 Clp protease AYI_RS04605 PF07724 AAA domain (Cdc48 subfamily) AYI_RS04605 PF10431 C-terminal, D2-small domain, of ClpB protein AYI_RS04605 PF06689 ClpX C4-type zinc finger AYI_RS04610 PF00004 ATPase family associated with various cellular activities (AAA) AYI_RS04610 PF02190 ATP-dependent protease La (LON) substrate-binding domain AYI_RS04610 PF05362 Lon protease (S16) C-terminal proteolytic domain AYI_RS04615 PF00216 Bacterial DNA-binding protein AYI_RS04630 PF17209 Hfq protein AYI_RS04635 PF16360 GTP-binding GTPase Middle Region AYI_RS04635 PF13167 GTP-binding GTPase N-terminal AYI_RS04635 PF01926 50S ribosome-binding GTPase AYI_RS04645 PF01145 SPFH domain / Band 7 family AYI_RS04645 PF12221 Bacterial membrane protein N terminal AYI_RS04650 PF01145 SPFH domain / Band 7 family AYI_RS04655 PF01451 Low molecular weight phosphotyrosine protein phosphatase AYI_RS04660 PF01926 50S ribosome-binding GTPase AYI_RS04670 PF00291 Pyridoxal-phosphate dependent enzyme AYI_RS04680 PF00682 HMGL-like AYI_RS04680 PF08502 LeuA allosteric (dimerisation) domain AYI_RS04700 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AYI_RS04700 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AYI_RS04705 PF02559 CarD-like/TRCF domain AYI_RS04705 PF00270 DEAD/DEAH box helicase AYI_RS04705 PF00271 Helicase conserved C-terminal domain AYI_RS04705 PF03461 TRCF domain AYI_RS04705 PF17757 UvrB interaction domain AYI_RS04710 PF01027 Inhibitor of apoptosis-promoting Bax1 AYI_RS04725 PF00633 Helix-hairpin-helix motif AYI_RS04725 PF10576 Iron-sulfur binding domain of endonuclease III AYI_RS04725 PF00730 HhH-GPD superfamily base excision DNA repair protein AYI_RS04730 PF04060 Putative Fe-S cluster AYI_RS04735 PF13417 Glutathione S-transferase, N-terminal domain AYI_RS04735 PF04399 Glutaredoxin 2, C terminal domain AYI_RS04745 PF00210 Ferritin-like domain AYI_RS04750 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AYI_RS04750 PF04055 Radical SAM superfamily AYI_RS04760 PF01709 Transcriptional regulator AYI_RS04765 PF02075 Crossover junction endodeoxyribonuclease RuvC AYI_RS04770 PF07690 Major Facilitator Superfamily AYI_RS04775 PF07499 RuvA, C-terminal domain AYI_RS04775 PF01330 RuvA N terminal domain AYI_RS04780 PF02646 RmuC family AYI_RS04805 PF00282 Pyridoxal-dependent decarboxylase conserved domain AYI_RS04810 PF00596 Class II Aldolase and Adducin N-terminal domain AYI_RS04815 PF02245 Methylpurine-DNA glycosylase (MPG) AYI_RS04830 PF00999 Sodium/hydrogen exchanger family AYI_RS04865 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AYI_RS04865 PF14572 Phosphoribosyl synthetase-associated domain AYI_RS04870 PF01386 Ribosomal L25p family AYI_RS04875 PF00571 CBS domain AYI_RS04875 PF01595 Cyclin M transmembrane N-terminal domain AYI_RS04875 PF03471 Transporter associated domain AYI_RS04890 PF06071 Protein of unknown function (DUF933) AYI_RS04890 PF01926 50S ribosome-binding GTPase AYI_RS04895 PF01195 Peptidyl-tRNA hydrolase AYI_RS04910 PF06750 Bacterial Peptidase A24 N-terminal domain AYI_RS04910 PF01478 Type IV leader peptidase family AYI_RS04915 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYI_RS04915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYI_RS04925 PF00854 POT family AYI_RS04930 PF10431 C-terminal, D2-small domain, of ClpB protein AYI_RS04930 PF07724 AAA domain (Cdc48 subfamily) AYI_RS04930 PF00004 ATPase family associated with various cellular activities (AAA) AYI_RS04935 PF00227 Proteasome subunit AYI_RS04945 PF10437 Bacterial lipoate protein ligase C-terminus AYI_RS04945 PF03099 Biotin/lipoate A/B protein ligase family AYI_RS04950 PF00579 tRNA synthetases class I (W and Y) AYI_RS04950 PF01479 S4 domain AYI_RS04960 PF13358 DDE superfamily endonuclease AYI_RS04970 PF01070 FMN-dependent dehydrogenase AYI_RS04975 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYI_RS04975 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYI_RS04975 PF00205 Thiamine pyrophosphate enzyme, central domain AYI_RS04980 PF02913 FAD linked oxidases, C-terminal domain AYI_RS04980 PF01565 FAD binding domain AYI_RS04990 PF00465 Iron-containing alcohol dehydrogenase AYI_RS05000 PF01207 Dihydrouridine synthase (Dus) AYI_RS05005 PF12161 HsdM N-terminal domain AYI_RS05005 PF02384 N-6 DNA Methylase AYI_RS05010 PF04480 Protein of unknown function (DUF559) AYI_RS05025 PF00817 impB/mucB/samB family AYI_RS05025 PF11799 impB/mucB/samB family C-terminal domain AYI_RS05025 PF11798 IMS family HHH motif AYI_RS05030 PF01965 DJ-1/PfpI family AYI_RS05035 PF12848 ABC transporter AYI_RS05035 PF00005 ABC transporter AYI_RS05040 PF00268 Ribonucleotide reductase, small chain AYI_RS05045 PF00462 Glutaredoxin AYI_RS05050 PF03477 ATP cone domain AYI_RS05050 PF00317 Ribonucleotide reductase, all-alpha domain AYI_RS05050 PF02867 Ribonucleotide reductase, barrel domain AYI_RS05055 PF00056 lactate/malate dehydrogenase, NAD binding domain AYI_RS05055 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AYI_RS05065 PF03232 Ubiquinone biosynthesis protein COQ7 AYI_RS05075 PF00899 ThiF family AYI_RS05085 PF13358 DDE superfamily endonuclease AYI_RS05090 PF00899 ThiF family AYI_RS05105 PF10417 C-terminal domain of 1-Cys peroxiredoxin AYI_RS05105 PF00578 AhpC/TSA family AYI_RS05140 PF00929 Exonuclease AYI_RS05145 PF02557 D-alanyl-D-alanine carboxypeptidase AYI_RS05160 PF00171 Aldehyde dehydrogenase family AYI_RS05170 PF02583 Metal-sensitive transcriptional repressor AYI_RS05175 PF00462 Glutaredoxin AYI_RS05180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYI_RS05180 PF03466 LysR substrate binding domain AYI_RS05185 PF08534 Redoxin AYI_RS05195 PF02224 Cytidylate kinase AYI_RS05200 PF00266 Aminotransferase class-V AYI_RS05205 PF02590 Predicted SPOUT methyltransferase AYI_RS05215 PF13358 DDE superfamily endonuclease AYI_RS05225 PF01218 Coproporphyrinogen III oxidase AYI_RS05230 PF01609 Transposase DDE domain AYI_RS05235 PF01250 Ribosomal protein S6 AYI_RS05240 PF01084 Ribosomal protein S18 AYI_RS05245 PF03948 Ribosomal protein L9, C-terminal domain AYI_RS05245 PF01281 Ribosomal protein L9, N-terminal domain AYI_RS05250 PF03796 DnaB-like helicase C terminal domain AYI_RS05250 PF00772 DnaB-like helicase N terminal domain AYI_RS05255 PF04055 Radical SAM superfamily AYI_RS05265 PF00849 RNA pseudouridylate synthase AYI_RS05265 PF01479 S4 domain AYI_RS05325 PF00348 Polyprenyl synthetase AYI_RS05335 PF01171 PP-loop family AYI_RS05350 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AYI_RS05355 PF01165 Ribosomal protein S21 AYI_RS05360 PF09424 Yqey-like protein AYI_RS05365 PF01807 CHC2 zinc finger AYI_RS05365 PF10410 DnaB-helicase binding domain of primase AYI_RS05365 PF08278 DNA primase DnaG DnaB-binding AYI_RS05365 PF13662 Toprim domain AYI_RS05365 PF08275 DNA primase catalytic core, N-terminal domain AYI_RS05370 PF04546 Sigma-70, non-essential region AYI_RS05370 PF04545 Sigma-70, region 4 AYI_RS05370 PF03979 Sigma-70 factor, region 1.1 AYI_RS05370 PF04539 Sigma-70 region 3 AYI_RS05370 PF04542 Sigma-70 region 2 AYI_RS05370 PF00140 Sigma-70 factor, region 1.2 AYI_RS05375 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYI_RS05390 PF03099 Biotin/lipoate A/B protein ligase family AYI_RS05395 PF04359 Protein of unknown function (DUF493) AYI_RS05400 PF07943 Penicillin-binding protein 5, C-terminal domain AYI_RS05400 PF00768 D-alanyl-D-alanine carboxypeptidase AYI_RS05405 PF00719 Inorganic pyrophosphatase AYI_RS05425 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYI_RS05425 PF00005 ABC transporter AYI_RS05430 PF01557 Fumarylacetoacetate (FAA) hydrolase family AYI_RS05435 PF01048 Phosphorylase superfamily AYI_RS05440 PF01416 tRNA pseudouridine synthase AYI_RS05450 PF00117 Glutamine amidotransferase class-I AYI_RS05450 PF00958 GMP synthase C terminal domain AYI_RS05450 PF02540 NAD synthase AYI_RS05455 PF02779 Transketolase, pyrimidine binding domain AYI_RS05455 PF02780 Transketolase, C-terminal domain AYI_RS05455 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AYI_RS05480 PF05496 Holliday junction DNA helicase RuvB P-loop domain AYI_RS05480 PF17864 RuvB AAA lid domain AYI_RS05480 PF05491 RuvB C-terminal winged helix domain AYI_RS05495 PF13443 Cro/C1-type HTH DNA-binding domain AYI_RS05525 PF01609 Transposase DDE domain AYI_RS05540 PF08032 RNA 2'-O ribose methyltransferase substrate binding AYI_RS05540 PF00588 SpoU rRNA Methylase family AYI_RS05550 PF03073 TspO/MBR family AYI_RS05555 PF01625 Peptide methionine sulfoxide reductase AYI_RS05575 PF08331 Domain of unknown function (DUF1730) AYI_RS05580 PF08331 Domain of unknown function (DUF1730) AYI_RS05610 PF02272 DHHA1 domain AYI_RS05610 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYI_RS05610 PF01411 tRNA synthetases class II (A) AYI_RS05620 PF00883 Cytosol aminopeptidase family, catalytic domain AYI_RS05620 PF02789 Cytosol aminopeptidase family, N-terminal domain AYI_RS05625 PF00923 Transaldolase/Fructose-6-phosphate aldolase AYI_RS05640 PF01609 Transposase DDE domain AYI_RS05655 PF01571 Aminomethyltransferase folate-binding domain AYI_RS05660 PF13361 UvrD-like helicase C-terminal domain AYI_RS05660 PF00580 UvrD/REP helicase N-terminal domain AYI_RS05665 PF13509 S1 domain AYI_RS05665 PF17783 CvfB-like winged helix domain AYI_RS05670 PF17773 UPF0176 acylphosphatase like domain AYI_RS05670 PF00581 Rhodanese-like domain AYI_RS05675 PF04381 Putative exonuclease, RdgC AYI_RS05690 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AYI_RS05690 PF06594 Haemolysin-type calcium binding protein related domain AYI_RS05700 PF06594 Haemolysin-type calcium binding protein related domain AYI_RS05700 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AYI_RS05710 PF07804 HipA-like C-terminal domain AYI_RS05710 PF13657 HipA N-terminal domain AYI_RS05715 PF01381 Helix-turn-helix AYI_RS05725 PF13358 DDE superfamily endonuclease AYI_RS05735 PF02590 Predicted SPOUT methyltransferase AYI_RS05750 PF00459 Inositol monophosphatase family AYI_RS05755 PF03601 Conserved hypothetical protein 698 AYI_RS05765 PF01266 FAD dependent oxidoreductase AYI_RS05765 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AYI_RS05775 PF00109 Beta-ketoacyl synthase, N-terminal domain AYI_RS05775 PF02801 Beta-ketoacyl synthase, C-terminal domain AYI_RS05780 PF00550 Phosphopantetheine attachment site AYI_RS05790 PF00698 Acyl transferase domain AYI_RS05795 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AYI_RS05795 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AYI_RS05800 PF02504 Fatty acid synthesis protein AYI_RS05805 PF01783 Ribosomal L32p protein family AYI_RS05815 PF02780 Transketolase, C-terminal domain AYI_RS05815 PF00456 Transketolase, thiamine diphosphate binding domain AYI_RS05815 PF02779 Transketolase, pyrimidine binding domain AYI_RS05820 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYI_RS05820 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYI_RS05825 PF00162 Phosphoglycerate kinase AYI_RS05830 PF02887 Pyruvate kinase, alpha/beta domain AYI_RS05830 PF00224 Pyruvate kinase, barrel domain AYI_RS05835 PF01116 Fructose-bisphosphate aldolase class-II AYI_RS05840 PF01204 Trehalase AYI_RS05855 PF07690 Major Facilitator Superfamily AYI_RS05870 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 AYI_RS05875 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AYI_RS05975 PF02600 Disulfide bond formation protein DsbB AYI_RS05980 PF00291 Pyridoxal-phosphate dependent enzyme AYI_RS05990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYI_RS05990 PF03466 LysR substrate binding domain AYI_RS06005 PF01926 50S ribosome-binding GTPase AYI_RS06005 PF12631 MnmE helical domain AYI_RS06005 PF10396 GTP-binding protein TrmE N-terminus AYI_RS06015 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AYI_RS06025 PF00588 SpoU rRNA Methylase family AYI_RS06030 PF01351 Ribonuclease HII AYI_RS06050 PF00380 Ribosomal protein S9/S16 AYI_RS06055 PF00572 Ribosomal protein L13 AYI_RS06060 PF01266 FAD dependent oxidoreductase AYI_RS06065 PF03562 MltA specific insert domain AYI_RS06065 PF06725 3D domain AYI_RS06070 PF01025 GrpE AYI_RS06075 PF00012 Hsp70 protein AYI_RS06080 PF00226 DnaJ domain AYI_RS06080 PF01556 DnaJ C terminal domain AYI_RS06080 PF00684 DnaJ central domain AYI_RS06085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYI_RS06085 PF03466 LysR substrate binding domain AYI_RS06100 PF13358 DDE superfamily endonuclease AYI_RS06105 PF00892 EamA-like transporter family AYI_RS06110 PF01409 tRNA synthetases class II core domain (F) AYI_RS06110 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AYI_RS06115 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AYI_RS06115 PF01588 Putative tRNA binding domain AYI_RS06115 PF03484 tRNA synthetase B5 domain AYI_RS06115 PF03483 B3/4 domain AYI_RS06115 PF03147 Ferredoxin-fold anticodon binding domain AYI_RS06120 PF01475 Ferric uptake regulator family AYI_RS06125 PF07683 Cobalamin synthesis protein cobW C-terminal domain AYI_RS06125 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYI_RS06140 PF13396 Phospholipase_D-nuclease N-terminal AYI_RS06140 PF13091 PLD-like domain AYI_RS06145 PF13396 Phospholipase_D-nuclease N-terminal AYI_RS06145 PF13091 PLD-like domain AYI_RS06155 PF10609 NUBPL iron-transfer P-loop NTPase AYI_RS06160 PF00692 dUTPase AYI_RS06175 PF13603 Leucyl-tRNA synthetase, Domain 2 AYI_RS06175 PF08264 Anticodon-binding domain of tRNA AYI_RS06175 PF00133 tRNA synthetases class I (I, L, M and V) AYI_RS06190 PF03652 Holliday junction resolvase AYI_RS06195 PF02622 Uncharacterized ACR, COG1678 AYI_RS06215 PF03744 6-carboxyhexanoate--CoA ligase AYI_RS06215 PF00155 Aminotransferase class I and II AYI_RS06220 PF00324 Amino acid permease AYI_RS06240 PF00085 Thioredoxin AYI_RS06255 PF01458 Uncharacterized protein family (UPF0051) AYI_RS06260 PF00005 ABC transporter AYI_RS06265 PF01458 Uncharacterized protein family (UPF0051) AYI_RS06270 PF02082 Transcriptional regulator AYI_RS06275 PF02080 TrkA-C domain AYI_RS06275 PF02254 TrkA-N domain AYI_RS06280 PF13520 Amino acid permease AYI_RS06295 PF01176 Translation initiation factor 1A / IF-1 AYI_RS06310 PF02978 Signal peptide binding domain AYI_RS06310 PF02881 SRP54-type protein, helical bundle domain AYI_RS06310 PF00448 SRP54-type protein, GTPase domain AYI_RS06315 PF00793 DAHP synthetase I family AYI_RS06320 PF13358 DDE superfamily endonuclease AYI_RS06340 PF03372 Endonuclease/Exonuclease/phosphatase family AYI_RS06360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYI_RS06360 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYI_RS06365 PF01906 Putative heavy-metal-binding AYI_RS06370 PF01609 Transposase DDE domain AYI_RS06375 PF00854 POT family AYI_RS06380 PF00270 DEAD/DEAH box helicase AYI_RS06380 PF00271 Helicase conserved C-terminal domain AYI_RS06385 PF01227 GTP cyclohydrolase I AYI_RS06410 PF00248 Aldo/keto reductase family AYI_RS06415 PF07690 Major Facilitator Superfamily AYI_RS06425 PF00117 Glutamine amidotransferase class-I AYI_RS06425 PF00591 Glycosyl transferase family, a/b domain AYI_RS06425 PF02885 Glycosyl transferase family, helical bundle domain AYI_RS06430 PF00117 Glutamine amidotransferase class-I AYI_RS06430 PF04715 Anthranilate synthase component I, N terminal region AYI_RS06430 PF00425 chorismate binding enzyme AYI_RS06435 PF13193 AMP-binding enzyme C-terminal domain AYI_RS06435 PF00501 AMP-binding enzyme AYI_RS06440 PF02152 Dihydroneopterin aldolase AYI_RS06445 PF00809 Pterin binding enzyme AYI_RS06445 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AYI_RS06450 PF07859 alpha/beta hydrolase fold AYI_RS06465 PF00202 Aminotransferase class-III AYI_RS06470 PF04055 Radical SAM superfamily AYI_RS06470 PF06968 Biotin and Thiamin Synthesis associated domain AYI_RS06475 PF00155 Aminotransferase class I and II AYI_RS06480 PF13847 Methyltransferase domain AYI_RS06490 PF08279 HTH domain AYI_RS06490 PF02237 Biotin protein ligase C terminal domain AYI_RS06490 PF03099 Biotin/lipoate A/B protein ligase family AYI_RS06495 PF00480 ROK family AYI_RS06520 PF01915 Glycosyl hydrolase family 3 C-terminal domain AYI_RS06520 PF00933 Glycosyl hydrolase family 3 N terminal domain AYI_RS06525 PF00202 Aminotransferase class-III AYI_RS06530 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AYI_RS06530 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AYI_RS06535 PF00551 Formyl transferase AYI_RS06535 PF02911 Formyl transferase, C-terminal domain AYI_RS06545 PF02926 THUMP domain AYI_RS06545 PF01170 Putative RNA methylase family UPF0020 AYI_RS06545 PF10672 S-adenosylmethionine-dependent methyltransferase AYI_RS06565 PF13358 DDE superfamily endonuclease AYI_RS06585 PF00106 short chain dehydrogenase AYI_RS06605 PF13358 DDE superfamily endonuclease AYI_RS06620 PF01609 Transposase DDE domain AYI_RS06630 PF01197 Ribosomal protein L31 AYI_RS06635 PF04262 Glutamate-cysteine ligase AYI_RS06640 PF03023 Lipid II flippase MurJ AYI_RS06650 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AYI_RS06655 PF08245 Mur ligase middle domain AYI_RS06660 PF17848 Acetyl-coA carboxylase zinc finger domain AYI_RS06660 PF01039 Carboxyl transferase domain AYI_RS06665 PF00334 Nucleoside diphosphate kinase AYI_RS06670 PF00117 Glutamine amidotransferase class-I AYI_RS06670 PF06418 CTP synthase N-terminus AYI_RS06675 PF03606 C4-dicarboxylate anaerobic carrier AYI_RS06680 PF03606 C4-dicarboxylate anaerobic carrier AYI_RS06700 PF13358 DDE superfamily endonuclease AYI_RS06705 PF12919 TcdA/TcdB catalytic glycosyltransferase domain AYI_RS06705 PF12918 TcdB toxin N-terminal helical domain AYI_RS06705 PF11713 Peptidase C80 family AYI_RS06705 PF12920 TcdA/TcdB pore forming domain AYI_RS06715 PF01930 Domain of unknown function DUF83 AYI_RS06720 PF09827 CRISPR associated protein Cas2 AYI_RS06725 PF01867 CRISPR associated protein Cas1 AYI_RS06730 PF01867 CRISPR associated protein Cas1 AYI_RS06750 PF00691 OmpA family AYI_RS06750 PF05736 OprF membrane domain AYI_RS06755 PF00037 4Fe-4S binding domain AYI_RS06760 PF01467 Cytidylyltransferase-like AYI_RS06765 PF01883 Iron-sulfur cluster assembly protein AYI_RS06770 PF01521 Iron-sulphur cluster biosynthesis AYI_RS06775 PF00266 Aminotransferase class-V AYI_RS06780 PF03313 Serine dehydratase alpha chain AYI_RS06780 PF03315 Serine dehydratase beta chain AYI_RS06790 PF00800 Prephenate dehydratase AYI_RS06790 PF01817 Chorismate mutase type II AYI_RS06790 PF01842 ACT domain AYI_RS06800 PF01168 Alanine racemase, N-terminal domain AYI_RS06800 PF00842 Alanine racemase, C-terminal domain AYI_RS06810 PF00854 POT family AYI_RS06845 PF01609 Transposase DDE domain AYI_RS06855 PF02092 Glycyl-tRNA synthetase beta subunit AYI_RS06855 PF05746 DALR anticodon binding domain AYI_RS06860 PF01026 TatD related DNase AYI_RS06865 PF02463 RecF/RecN/SMC N terminal domain AYI_RS06885 PF16177 Acetyl-coenzyme A synthetase N-terminus AYI_RS06885 PF00501 AMP-binding enzyme AYI_RS06885 PF13193 AMP-binding enzyme C-terminal domain AYI_RS06890 PF13193 AMP-binding enzyme C-terminal domain AYI_RS06890 PF16177 Acetyl-coenzyme A synthetase N-terminus AYI_RS06890 PF00501 AMP-binding enzyme AYI_RS06895 PF00483 Nucleotidyl transferase AYI_RS06900 PF01545 Cation efflux family AYI_RS06900 PF16916 Dimerisation domain of Zinc Transporter AYI_RS06920 PF01165 Ribosomal protein S21 AYI_RS06930 PF00313 'Cold-shock' DNA-binding domain AYI_RS06935 PF04055 Radical SAM superfamily AYI_RS06940 PF07859 alpha/beta hydrolase fold AYI_RS06945 PF01614 Bacterial transcriptional regulator AYI_RS06945 PF09339 IclR helix-turn-helix domain AYI_RS06975 PF13358 DDE superfamily endonuclease AYI_RS07015 PF03968 OstA-like protein AYI_RS07015 PF04453 LPS transport system D AYI_RS07020 PF01479 S4 domain AYI_RS07025 PF01256 Carbohydrate kinase AYI_RS07025 PF03853 YjeF-related protein N-terminus AYI_RS07040 PF13378 Enolase C-terminal domain-like AYI_RS07040 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AYI_RS07060 PF00255 Glutathione peroxidase AYI_RS07075 PF01609 Transposase DDE domain AYI_RS07085 PF00962 Adenosine/AMP deaminase AYI_RS07090 PF02910 Fumarate reductase flavoprotein C-term AYI_RS07090 PF00890 FAD binding domain AYI_RS07095 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AYI_RS07095 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AYI_RS07100 PF02445 Quinolinate synthetase A protein AYI_RS07105 PF00625 Guanylate kinase AYI_RS07110 PF00271 Helicase conserved C-terminal domain AYI_RS07110 PF00270 DEAD/DEAH box helicase AYI_RS07110 PF03880 DbpA RNA binding domain AYI_RS07120 PF00083 Sugar (and other) transporter AYI_RS07125 PF00083 Sugar (and other) transporter AYI_RS07130 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AYI_RS07130 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AYI_RS07135 PF10509 Galactokinase galactose-binding signature AYI_RS07135 PF00288 GHMP kinases N terminal domain AYI_RS07135 PF08544 GHMP kinases C terminal AYI_RS07145 PF02348 Cytidylyltransferase AYI_RS07150 PF03966 Trm112p-like protein AYI_RS07160 PF13358 DDE superfamily endonuclease AYI_RS07180 PF00453 Ribosomal protein L20 AYI_RS07185 PF01632 Ribosomal protein L35 AYI_RS07190 PF00707 Translation initiation factor IF-3, C-terminal domain AYI_RS07190 PF05198 Translation initiation factor IF-3, N-terminal domain AYI_RS07195 PF03129 Anticodon binding domain AYI_RS07195 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYI_RS07195 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYI_RS07195 PF02824 TGS domain AYI_RS07200 PF18416 N-acetylglucosamine binding protein domain 2 AYI_RS07200 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AYI_RS07210 PF01597 Glycine cleavage H-protein AYI_RS07215 PF04101 Glycosyltransferase family 28 C-terminal domain AYI_RS07215 PF03033 Glycosyltransferase family 28 N-terminal domain AYI_RS07220 PF02575 YbaB/EbfC DNA-binding family AYI_RS07225 PF13662 Toprim domain AYI_RS07225 PF02132 RecR protein AYI_RS07230 PF02824 TGS domain AYI_RS07230 PF04607 Region found in RelA / SpoT proteins AYI_RS07230 PF13291 ACT domain AYI_RS07240 PF14102 Capsule biosynthesis CapC AYI_RS07245 PF08245 Mur ligase middle domain AYI_RS07250 PF00083 Sugar (and other) transporter AYI_RS07250 PF08946 Osmosensory transporter coiled coil AYI_RS07280 PF01112 Asparaginase AYI_RS07285 PF03575 Peptidase family S51 AYI_RS07300 PF00534 Glycosyl transferases group 1 AYI_RS07300 PF13439 Glycosyltransferase Family 4 AYI_RS07305 PF00535 Glycosyl transferase family 2 AYI_RS07305 PF01501 Glycosyl transferase family 8 AYI_RS07310 PF00535 Glycosyl transferase family 2 AYI_RS07310 PF01501 Glycosyl transferase family 8 AYI_RS07315 PF04991 LicD family AYI_RS07325 PF00690 Cation transporter/ATPase, N-terminus AYI_RS07325 PF00689 Cation transporting ATPase, C-terminus AYI_RS07330 PF00664 ABC transporter transmembrane region AYI_RS07330 PF00005 ABC transporter AYI_RS07340 PF16363 GDP-mannose 4,6 dehydratase AYI_RS07345 PF02397 Bacterial sugar transferase AYI_RS07350 PF00834 Ribulose-phosphate 3 epimerase family AYI_RS07355 PF01380 SIS domain AYI_RS07355 PF00571 CBS domain AYI_RS07385 PF01609 Transposase DDE domain AYI_RS07395 PF03641 Possible lysine decarboxylase AYI_RS07405 PF01609 Transposase DDE domain AYI_RS07420 PF01541 GIY-YIG catalytic domain AYI_RS07420 PF02151 UvrB/uvrC motif AYI_RS07420 PF08459 UvrC Helix-hairpin-helix N-terminal AYI_RS07425 PF00570 HRDC domain AYI_RS07425 PF01612 3'-5' exonuclease AYI_RS07430 PF07690 Major Facilitator Superfamily AYI_RS07440 PF01016 Ribosomal L27 protein AYI_RS07445 PF00829 Ribosomal prokaryotic L21 protein AYI_RS07460 PF02810 SEC-C motif AYI_RS07460 PF07516 SecA Wing and Scaffold domain AYI_RS07460 PF07517 SecA DEAD-like domain AYI_RS07460 PF01043 SecA preprotein cross-linking domain AYI_RS07475 PF01048 Phosphorylase superfamily AYI_RS07480 PF13358 DDE superfamily endonuclease AYI_RS07490 PF01609 Transposase DDE domain AYI_RS07495 PF00004 ATPase family associated with various cellular activities (AAA) AYI_RS07495 PF17862 AAA+ lid domain AYI_RS07495 PF06480 FtsH Extracellular AYI_RS07495 PF01434 Peptidase family M41 AYI_RS07505 PF01609 Transposase DDE domain AYI_RS07515 PF17760 UvrA interaction domain AYI_RS07515 PF17755 UvrA DNA-binding domain AYI_RS07520 PF01272 Transcription elongation factor, GreA/GreB, C-term AYI_RS07520 PF03449 Transcription elongation factor, N-terminal AYI_RS07530 PF00342 Phosphoglucose isomerase AYI_RS07540 PF00478 IMP dehydrogenase / GMP reductase domain AYI_RS07540 PF00571 CBS domain AYI_RS07545 PF02789 Cytosol aminopeptidase family, N-terminal domain AYI_RS07545 PF00883 Cytosol aminopeptidase family, catalytic domain AYI_RS07550 PF03739 Lipopolysaccharide export system permease LptF/LptG AYI_RS07555 PF03739 Lipopolysaccharide export system permease LptF/LptG AYI_RS07575 PF03458 UPF0126 domain AYI_RS07580 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AYI_RS07585 PF01048 Phosphorylase superfamily AYI_RS07590 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYI_RS07600 PF13183 4Fe-4S dicluster domain AYI_RS07600 PF01565 FAD binding domain AYI_RS07600 PF02913 FAD linked oxidases, C-terminal domain AYI_RS07605 PF01676 Metalloenzyme superfamily AYI_RS07605 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AYI_RS07610 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYI_RS07610 PF02403 Seryl-tRNA synthetase N-terminal domain AYI_RS07615 PF00480 ROK family AYI_RS07635 PF00005 ABC transporter AYI_RS07635 PF00664 ABC transporter transmembrane region AYI_RS07640 PF00664 ABC transporter transmembrane region AYI_RS07640 PF00005 ABC transporter AYI_RS07645 PF00375 Sodium:dicarboxylate symporter family AYI_RS07650 PF01042 Endoribonuclease L-PSP AYI_RS07655 PF01740 STAS domain AYI_RS07655 PF00916 Sulfate permease family AYI_RS07660 PF01609 Transposase DDE domain AYI_RS07670 PF01966 HD domain AYI_RS07670 PF13286 Phosphohydrolase-associated domain AYI_RS07675 PF00141 Peroxidase AYI_RS07680 PF13358 DDE superfamily endonuclease AYI_RS07700 PF07690 Major Facilitator Superfamily AYI_RS07705 PF03009 Glycerophosphoryl diester phosphodiesterase family AYI_RS07715 PF00005 ABC transporter AYI_RS07725 PF01609 Transposase DDE domain AYI_RS07745 PF00041 Fibronectin type III domain AYI_RS07745 PF00704 Glycosyl hydrolases family 18 AYI_RS07750 PF00155 Aminotransferase class I and II AYI_RS07755 PF00107 Zinc-binding dehydrogenase AYI_RS07755 PF08240 Alcohol dehydrogenase GroES-like domain AYI_RS07765 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AYI_RS07770 PF04977 Septum formation initiator AYI_RS07775 PF03952 Enolase, N-terminal domain AYI_RS07775 PF00113 Enolase, C-terminal TIM barrel domain AYI_RS07785 PF04973 Nicotinamide mononucleotide transporter AYI_RS07790 PF00480 ROK family AYI_RS07795 PF05958 tRNA (Uracil-5-)-methyltransferase AYI_RS07810 PF01192 RNA polymerase Rpb6 AYI_RS07815 PF00485 Phosphoribulokinase / Uridine kinase family AYI_RS07820 PF00793 DAHP synthetase I family AYI_RS07825 PF01521 Iron-sulphur cluster biosynthesis AYI_RS07830 PF00575 S1 RNA binding domain AYI_RS07830 PF03725 3' exoribonuclease family, domain 2 AYI_RS07830 PF01138 3' exoribonuclease family, domain 1 AYI_RS07830 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AYI_RS07830 PF00013 KH domain AYI_RS07835 PF00312 Ribosomal protein S15 AYI_RS07840 PF00905 Penicillin binding protein transpeptidase domain AYI_RS07840 PF03717 Penicillin-binding Protein dimerisation domain AYI_RS07845 PF04999 Cell division protein FtsL AYI_RS07850 PF01795 MraW methylase family AYI_RS07855 PF01553 Acyltransferase AYI_RS07855 PF00501 AMP-binding enzyme AYI_RS07855 PF13193 AMP-binding enzyme C-terminal domain AYI_RS07860 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AYI_RS07860 PF06827 Zinc finger found in FPG and IleRS AYI_RS07860 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AYI_RS07870 PF13358 DDE superfamily endonuclease AYI_RS07875 PF01174 SNO glutamine amidotransferase family AYI_RS07880 PF01680 SOR/SNZ family AYI_RS07885 PF00204 DNA gyrase B AYI_RS07885 PF01751 Toprim domain AYI_RS07885 PF00986 DNA gyrase B subunit, carboxyl terminus AYI_RS07885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYI_RS07885 PF18053 DNA gyrase B subunit insert domain AYI_RS07895 PF01207 Dihydrouridine synthase (Dus) AYI_RS07920 PF00549 CoA-ligase AYI_RS07920 PF08442 ATP-grasp domain AYI_RS07925 PF02629 CoA binding domain AYI_RS07925 PF00549 CoA-ligase AYI_RS07935 PF01594 AI-2E family transporter AYI_RS07950 PF01112 Asparaginase AYI_RS07965 PF03932 CutC family AYI_RS07970 PF07690 Major Facilitator Superfamily AYI_RS07975 PF03466 LysR substrate binding domain AYI_RS07975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYI_RS07980 PF13419 Haloacid dehalogenase-like hydrolase AYI_RS07990 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYI_RS07995 PF01609 Transposase DDE domain AYI_RS08010 PF01119 DNA mismatch repair protein, C-terminal domain AYI_RS08010 PF08676 MutL C terminal dimerisation domain AYI_RS08025 PF03193 RsgA GTPase AYI_RS08030 PF11685 Protein of unknown function (DUF3281) AYI_RS08035 PF13416 Bacterial extracellular solute-binding protein AYI_RS08040 PF13520 Amino acid permease AYI_RS08045 PF01594 AI-2E family transporter AYI_RS08050 PF01368 DHH family AYI_RS08050 PF02272 DHHA1 domain AYI_RS08050 PF17768 RecJ OB domain AYI_RS08055 PF08279 HTH domain AYI_RS08055 PF03099 Biotin/lipoate A/B protein ligase family AYI_RS08055 PF02237 Biotin protein ligase C terminal domain AYI_RS08060 PF00152 tRNA synthetases class II (D, K and N) AYI_RS08070 PF01609 Transposase DDE domain AYI_RS08080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYI_RS08080 PF00289 Biotin carboxylase, N-terminal domain AYI_RS08080 PF02785 Biotin carboxylase C-terminal domain AYI_RS08085 PF00364 Biotin-requiring enzyme AYI_RS08090 PF01220 Dehydroquinase class II AYI_RS08095 PF00149 Calcineurin-like phosphoesterase AYI_RS08100 PF00398 Ribosomal RNA adenine dimethylase AYI_RS08105 PF09312 SurA N-terminal domain AYI_RS08105 PF00639 PPIC-type PPIASE domain AYI_RS08110 PF03968 OstA-like protein AYI_RS08110 PF04453 LPS transport system D AYI_RS08115 PF00750 tRNA synthetases class I (R) AYI_RS08115 PF03485 Arginyl tRNA synthetase N terminal domain AYI_RS08115 PF05746 DALR anticodon binding domain AYI_RS08125 PF00710 Asparaginase, N-terminal AYI_RS08125 PF17763 Glutaminase/Asparaginase C-terminal domain AYI_RS08130 PF00588 SpoU rRNA Methylase family AYI_RS08135 PF00490 Delta-aminolevulinic acid dehydratase AYI_RS08140 PF01985 CRS1 / YhbY (CRM) domain AYI_RS08145 PF09115 DNA polymerase III, delta subunit, C terminal AYI_RS08150 PF01343 Peptidase family S49 AYI_RS08150 PF08496 Peptidase family S49 N-terminal AYI_RS08155 PF00043 Glutathione S-transferase, C-terminal domain AYI_RS08155 PF02798 Glutathione S-transferase, N-terminal domain AYI_RS08160 PF04358 DsrC like protein AYI_RS08165 PF04362 Bacterial Fe(2+) trafficking AYI_RS08170 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AYI_RS08175 PF13358 DDE superfamily endonuclease AYI_RS08185 PF00535 Glycosyl transferase family 2 AYI_RS08190 PF04794 YdjC-like protein AYI_RS08195 PF01098 Cell cycle protein AYI_RS08200 PF08245 Mur ligase middle domain AYI_RS08200 PF02875 Mur ligase family, glutamate ligase domain AYI_RS08205 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AYI_RS08205 PF00953 Glycosyl transferase family 4 AYI_RS08210 PF01293 Phosphoenolpyruvate carboxykinase AYI_RS08215 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AYI_RS08215 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYI_RS08225 PF00854 POT family AYI_RS08230 PF00005 ABC transporter AYI_RS08230 PF12848 ABC transporter AYI_RS08230 PF16326 ABC transporter C-terminal domain AYI_RS08235 PF07690 Major Facilitator Superfamily AYI_RS08245 PF07690 Major Facilitator Superfamily AYI_RS08255 PF00588 SpoU rRNA Methylase family AYI_RS08255 PF08032 RNA 2'-O ribose methyltransferase substrate binding AYI_RS08265 PF13358 DDE superfamily endonuclease AYI_RS08275 PF13358 DDE superfamily endonuclease AYI_RS08355 PF13358 DDE superfamily endonuclease AYI_RS08360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AYI_RS08360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AYI_RS08375 PF07690 Major Facilitator Superfamily AYI_RS08380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYI_RS08380 PF00005 ABC transporter AYI_RS08395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYI_RS08400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYI_RS08405 PF01609 Transposase DDE domain AYI_RS08410 PF00580 UvrD/REP helicase N-terminal domain AYI_RS08410 PF13361 UvrD-like helicase C-terminal domain AYI_RS08415 PF00448 SRP54-type protein, GTPase domain AYI_RS08415 PF02881 SRP54-type protein, helical bundle domain AYI_RS08425 PF16658 Class II release factor RF3, C-terminal domain AYI_RS08425 PF03144 Elongation factor Tu domain 2 AYI_RS08425 PF00009 Elongation factor Tu GTP binding domain AYI_RS08430 PF02223 Thymidylate kinase AYI_RS08435 PF07670 Nucleoside recognition AYI_RS08435 PF01773 Na+ dependent nucleoside transporter N-terminus AYI_RS08435 PF07662 Na+ dependent nucleoside transporter C-terminus AYI_RS08440 PF01773 Na+ dependent nucleoside transporter N-terminus AYI_RS08440 PF07662 Na+ dependent nucleoside transporter C-terminus AYI_RS08445 PF01791 DeoC/LacD family aldolase AYI_RS08450 PF01676 Metalloenzyme superfamily AYI_RS08455 PF03309 Type III pantothenate kinase AYI_RS08460 PF01367 5'-3' exonuclease, C-terminal SAM fold AYI_RS08460 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AYI_RS08460 PF00476 DNA polymerase family A AYI_RS08460 PF01612 3'-5' exonuclease AYI_RS08465 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AYI_RS08470 PF00664 ABC transporter transmembrane region AYI_RS08470 PF00005 ABC transporter AYI_RS08475 PF01743 Poly A polymerase head domain AYI_RS08475 PF12627 Probable RNA and SrmB- binding site of polymerase A AYI_RS08485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYI_RS08490 PF00873 AcrB/AcrD/AcrF family AYI_RS08510 PF02016 LD-carboxypeptidase N-terminal domain AYI_RS08510 PF17676 LD-carboxypeptidase C-terminal domain AYI_RS08520 PF01609 Transposase DDE domain AYI_RS08530 PF13358 DDE superfamily endonuclease AYI_RS08540 PF09190 DALR domain AYI_RS08540 PF01406 tRNA synthetases class I (C) catalytic domain AYI_RS08545 PF05175 Methyltransferase small domain AYI_RS08550 PF07690 Major Facilitator Superfamily AYI_RS08555 PF00583 Acetyltransferase (GNAT) family AYI_RS08565 PF13358 DDE superfamily endonuclease AYI_RS08615 PF00535 Glycosyl transferase family 2 AYI_RS08620 PF00474 Sodium:solute symporter family AYI_RS08625 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AYI_RS08630 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AYI_RS08635 PF00324 Amino acid permease AYI_RS08640 PF01569 PAP2 superfamily AYI_RS08645 PF09397 Ftsk gamma domain AYI_RS08645 PF01580 FtsK/SpoIIIE family AYI_RS08645 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AYI_RS08645 PF17854 FtsK alpha domain AYI_RS08650 PF03548 Outer membrane lipoprotein carrier protein LolA AYI_RS08660 PF02386 Cation transport protein AYI_RS08685 PF18766 SWI2/SNF2 ATPase AYI_RS08685 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AYI_RS08685 PF11867 Domain of unknown function (DUF3387) AYI_RS08695 PF13358 DDE superfamily endonuclease AYI_RS08700 PF00118 TCP-1/cpn60 chaperonin family AYI_RS08705 PF00166 Chaperonin 10 Kd subunit AYI_RS08720 PF03883 Peroxide stress protein YaaA AYI_RS08725 PF13358 DDE superfamily endonuclease AYI_RS08735 PF02590 Predicted SPOUT methyltransferase AYI_RS08740 PF13847 Methyltransferase domain AYI_RS08740 PF17827 PrmC N-terminal domain AYI_RS08745 PF03462 PCRF domain AYI_RS08745 PF00472 RF-1 domain AYI_RS08750 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AYI_RS08750 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AYI_RS08750 PF01488 Shikimate / quinate 5-dehydrogenase AYI_RS08760 PF13360 PQQ-like domain AYI_RS08765 PF07690 Major Facilitator Superfamily AYI_RS08770 PF01751 Toprim domain AYI_RS08770 PF00986 DNA gyrase B subunit, carboxyl terminus AYI_RS08770 PF00204 DNA gyrase B AYI_RS08770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYI_RS08775 PF01510 N-acetylmuramoyl-L-alanine amidase AYI_RS08785 PF00293 NUDIX domain AYI_RS08805 PF14226 non-haem dioxygenase in morphine synthesis N-terminal AYI_RS08805 PF03171 2OG-Fe(II) oxygenase superfamily AYI_RS08810 PF00589 Phage integrase family AYI_RS08810 PF02899 Phage integrase, N-terminal SAM-like domain AYI_RS08815 PF01245 Ribosomal protein L19 AYI_RS08820 PF01746 tRNA (Guanine-1)-methyltransferase AYI_RS08825 PF01782 RimM N-terminal domain AYI_RS08825 PF05239 PRC-barrel domain AYI_RS08830 PF00886 Ribosomal protein S16 AYI_RS08835 PF02773 S-adenosylmethionine synthetase, C-terminal domain AYI_RS08835 PF00438 S-adenosylmethionine synthetase, N-terminal domain AYI_RS08835 PF02772 S-adenosylmethionine synthetase, central domain AYI_RS08845 PF00814 Glycoprotease family AYI_RS08855 PF04998 RNA polymerase Rpb1, domain 5 AYI_RS08855 PF05000 RNA polymerase Rpb1, domain 4 AYI_RS08855 PF04983 RNA polymerase Rpb1, domain 3 AYI_RS08855 PF00623 RNA polymerase Rpb1, domain 2 AYI_RS08855 PF04997 RNA polymerase Rpb1, domain 1 AYI_RS08860 PF04563 RNA polymerase beta subunit AYI_RS08860 PF04561 RNA polymerase Rpb2, domain 2 AYI_RS08860 PF04565 RNA polymerase Rpb2, domain 3 AYI_RS08860 PF10385 RNA polymerase beta subunit external 1 domain AYI_RS08860 PF00562 RNA polymerase Rpb2, domain 6 AYI_RS08860 PF04560 RNA polymerase Rpb2, domain 7 AYI_RS08865 PF16320 Ribosomal protein L7/L12 dimerisation domain AYI_RS08865 PF00542 Ribosomal protein L7/L12 C-terminal domain AYI_RS08870 PF00466 Ribosomal protein L10 AYI_RS08875 PF00687 Ribosomal protein L1p/L10e family AYI_RS08880 PF00298 Ribosomal protein L11, RNA binding domain AYI_RS08880 PF03946 Ribosomal protein L11, N-terminal domain AYI_RS08885 PF00467 KOW motif AYI_RS08885 PF02357 Transcription termination factor nusG AYI_RS08900 PF03144 Elongation factor Tu domain 2 AYI_RS08900 PF00009 Elongation factor Tu GTP binding domain AYI_RS08900 PF03143 Elongation factor Tu C-terminal domain AYI_RS08920 PF13538 UvrD-like helicase C-terminal domain AYI_RS08925 PF00924 Mechanosensitive ion channel AYI_RS08925 PF05552 Conserved TM helix AYI_RS08935 PF00230 Major intrinsic protein AYI_RS08940 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AYI_RS08940 PF01266 FAD dependent oxidoreductase AYI_RS08950 PF13358 DDE superfamily endonuclease AYI_RS08970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYI_RS08970 PF00512 His Kinase A (phospho-acceptor) domain AYI_RS08975 PF08338 Domain of unknown function (DUF1731) AYI_RS08975 PF01370 NAD dependent epimerase/dehydratase family AYI_RS08990 PF02322 Cytochrome bd terminal oxidase subunit II AYI_RS09000 PF01593 Flavin containing amine oxidoreductase AYI_RS09010 PF00437 Type II/IV secretion system protein AYI_RS09020 PF00694 Aconitase C-terminal domain AYI_RS09020 PF00330 Aconitase family (aconitate hydratase) AYI_RS09035 PF06969 HemN C-terminal domain AYI_RS09035 PF04055 Radical SAM superfamily AYI_RS09060 PF03840 Preprotein translocase SecG subunit AYI_RS09065 PF00121 Triosephosphate isomerase AYI_RS09070 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYI_RS09070 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYI_RS09070 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYI_RS09070 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYI_RS09075 PF00156 Phosphoribosyl transferase domain AYI_RS09080 PF00364 Biotin-requiring enzyme AYI_RS09080 PF02817 e3 binding domain AYI_RS09080 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYI_RS09085 PF02779 Transketolase, pyrimidine binding domain AYI_RS09085 PF00676 Dehydrogenase E1 component AYI_RS09085 PF16870 2-oxoglutarate dehydrogenase C-terminal AYI_RS09085 PF16078 2-oxoglutarate dehydrogenase N-terminus AYI_RS09090 PF13085 2Fe-2S iron-sulfur cluster binding domain AYI_RS09095 PF00890 FAD binding domain AYI_RS09095 PF02910 Fumarate reductase flavoprotein C-term AYI_RS09100 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AYI_RS09105 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AYI_RS09110 PF00285 Citrate synthase, C-terminal domain AYI_RS09115 PF07690 Major Facilitator Superfamily AYI_RS09125 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AYI_RS09125 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AYI_RS09130 PF00462 Glutaredoxin AYI_RS09135 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AYI_RS09135 PF18416 N-acetylglucosamine binding protein domain 2 AYI_RS09140 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AYI_RS09145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYI_RS09145 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYI_RS09150 PF00231 ATP synthase AYI_RS09155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYI_RS09155 PF00306 ATP synthase alpha/beta chain, C terminal domain AYI_RS09155 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYI_RS09160 PF00213 ATP synthase delta (OSCP) subunit AYI_RS09165 PF00430 ATP synthase B/B' CF(0) AYI_RS09170 PF00137 ATP synthase subunit C AYI_RS09175 PF00119 ATP synthase A chain AYI_RS09190 PF00849 RNA pseudouridylate synthase AYI_RS09190 PF01479 S4 domain AYI_RS09195 PF03969 AFG1-like ATPase AYI_RS09205 PF13393 Histidyl-tRNA synthetase AYI_RS09205 PF03129 Anticodon binding domain AYI_RS09210 PF02033 Ribosome-binding factor A AYI_RS09215 PF11987 Translation-initiation factor 2 AYI_RS09215 PF04760 Translation initiation factor IF-2, N-terminal region AYI_RS09215 PF00009 Elongation factor Tu GTP binding domain AYI_RS09220 PF08529 NusA N-terminal domain AYI_RS09220 PF13184 NusA-like KH domain AYI_RS09225 PF17384 RimP C-terminal SH3 domain AYI_RS09225 PF02576 RimP N-terminal domain AYI_RS09235 PF01208 Uroporphyrinogen decarboxylase (URO-D) AYI_RS09240 PF01078 Magnesium chelatase, subunit ChlI AYI_RS09240 PF13335 Magnesium chelatase, subunit ChlI C-terminal AYI_RS09245 PF13358 DDE superfamily endonuclease AYI_RS09255 PF04380 Membrane fusogenic activity AYI_RS09260 PF00361 Proton-conducting membrane transporter AYI_RS09265 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AYI_RS09265 PF00361 Proton-conducting membrane transporter AYI_RS09270 PF00361 Proton-conducting membrane transporter AYI_RS09270 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYI_RS09275 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AYI_RS09280 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AYI_RS09285 PF12838 4Fe-4S dicluster domain AYI_RS09290 PF00146 NADH dehydrogenase AYI_RS09295 PF00384 Molybdopterin oxidoreductase AYI_RS09295 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AYI_RS09295 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AYI_RS09300 PF10531 SLBB domain AYI_RS09300 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AYI_RS09300 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AYI_RS09310 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AYI_RS09315 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AYI_RS09320 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AYI_RS09325 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AYI_RS09330 PF01475 Ferric uptake regulator family AYI_RS09335 PF04183 IucA / IucC family AYI_RS09335 PF06276 Ferric iron reductase FhuF-like transporter AYI_RS09340 PF07690 Major Facilitator Superfamily AYI_RS09345 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AYI_RS09345 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AYI_RS09350 PF07690 Major Facilitator Superfamily AYI_RS09365 PF06767 Sif protein AYI_RS09365 PF00657 GDSL-like Lipase/Acylhydrolase AYI_RS09375 PF02934 GatB/GatE catalytic domain AYI_RS09375 PF02637 GatB domain AYI_RS09380 PF01425 Amidase AYI_RS09385 PF02686 Glu-tRNAGln amidotransferase C subunit AYI_RS09405 PF00206 Lyase AYI_RS09405 PF10397 Adenylosuccinate lyase C-terminus AYI_RS09410 PF01609 Transposase DDE domain AYI_RS09430 PF09521 NgoPII restriction endonuclease AYI_RS09440 PF00145 C-5 cytosine-specific DNA methylase AYI_RS09445 PF00145 C-5 cytosine-specific DNA methylase AYI_RS09450 PF00145 C-5 cytosine-specific DNA methylase AYI_RS09455 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AYI_RS09455 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AYI_RS09455 PF02769 AIR synthase related protein, C-terminal domain AYI_RS09460 PF00156 Phosphoribosyl transferase domain AYI_RS09475 PF02321 Outer membrane efflux protein AYI_RS09485 PF16325 Peptidase family U32 C-terminal domain AYI_RS09485 PF01136 Peptidase family U32 AYI_RS09490 PF07690 Major Facilitator Superfamily AYI_RS09495 PF03600 Citrate transporter AYI_RS09505 PF13520 Amino acid permease AYI_RS09510 PF01018 GTP1/OBG AYI_RS09510 PF01926 50S ribosome-binding GTPase AYI_RS09515 PF03222 Tryptophan/tyrosine permease family AYI_RS09545 PF02669 K+-transporting ATPase, c chain AYI_RS09555 PF03814 Potassium-transporting ATPase A subunit AYI_RS09560 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYI_RS09560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYI_RS09565 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYI_RS09565 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYI_RS09570 PF01609 Transposase DDE domain AYI_RS09575 PF13358 DDE superfamily endonuclease AYI_RS09590 PF00694 Aconitase C-terminal domain AYI_RS09595 PF00330 Aconitase family (aconitate hydratase) AYI_RS09605 PF13358 DDE superfamily endonuclease AYI_RS09610 PF11713 Peptidase C80 family AYI_RS09610 PF12920 TcdA/TcdB pore forming domain AYI_RS09610 PF12918 TcdB toxin N-terminal helical domain AYI_RS09610 PF12919 TcdA/TcdB catalytic glycosyltransferase domain AYI_RS09625 PF08212 Lipocalin-like domain AYI_RS09635 PF03951 Glutamine synthetase, beta-Grasp domain AYI_RS09635 PF00120 Glutamine synthetase, catalytic domain AYI_RS09640 PF04960 Glutaminase AYI_RS09650 PF03350 Uncharacterized protein family, UPF0114 AYI_RS09655 PF01336 OB-fold nucleic acid binding domain AYI_RS09655 PF00152 tRNA synthetases class II (D, K and N) AYI_RS09660 PF00472 RF-1 domain AYI_RS09660 PF03462 PCRF domain AYI_RS09665 PF12169 DNA polymerase III subunits gamma and tau domain III AYI_RS09665 PF12170 DNA polymerase III tau subunit V interacting with alpha AYI_RS09670 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AYI_RS09675 PF12327 FtsZ family, C-terminal domain AYI_RS09675 PF00091 Tubulin/FtsZ family, GTPase domain AYI_RS09680 PF02491 SHS2 domain inserted in FTSA AYI_RS09685 PF08478 POTRA domain, FtsQ-type AYI_RS09685 PF03799 Cell division protein FtsQ AYI_RS09690 PF07478 D-ala D-ala ligase C-terminus AYI_RS09695 PF14437 MafB19-like deaminase AYI_RS09700 PF00575 S1 RNA binding domain AYI_RS09705 PF01300 Telomere recombination AYI_RS09715 PF01553 Acyltransferase AYI_RS09730 PF01820 D-ala D-ala ligase N-terminus AYI_RS09730 PF07478 D-ala D-ala ligase C-terminus AYI_RS09745 PF00005 ABC transporter AYI_RS09750 PF02325 YGGT family AYI_RS09765 PF13358 DDE superfamily endonuclease AYI_RS09775 PF13340 Putative transposase of IS4/5 family (DUF4096) AYI_RS09785 PF02142 MGS-like domain AYI_RS09785 PF01808 AICARFT/IMPCHase bienzyme AYI_RS09790 PF00709 Adenylosuccinate synthetase AYI_RS09795 PF00156 Phosphoribosyl transferase domain AYI_RS09810 PF00005 ABC transporter AYI_RS09830 PF03358 NADPH-dependent FMN reductase AYI_RS09835 PF03631 Virulence factor BrkB AYI_RS09845 PF00271 Helicase conserved C-terminal domain AYI_RS09845 PF17764 3′ DNA-binding domain (3′BD) AYI_RS09845 PF00270 DEAD/DEAH box helicase AYI_RS09845 PF18074 Primosomal protein N C-terminal domain AYI_RS09845 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AYI_RS09855 PF13358 DDE superfamily endonuclease AYI_RS09865 PF12848 ABC transporter AYI_RS09865 PF00005 ABC transporter AYI_RS09870 PF07690 Major Facilitator Superfamily AYI_RS09885 PF12706 Beta-lactamase superfamily domain AYI_RS09910 PF11940 Domain of unknown function (DUF3458) Ig-like fold AYI_RS09910 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AYI_RS09910 PF01433 Peptidase family M1 domain AYI_RS09915 PF00011 Hsp20/alpha crystallin family AYI_RS09920 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AYI_RS09920 PF00218 Indole-3-glycerol phosphate synthase AYI_RS09930 PF01625 Peptide methionine sulfoxide reductase AYI_RS09935 PF02979 Nitrile hydratase, alpha chain AYI_RS09950 PF02885 Glycosyl transferase family, helical bundle domain AYI_RS09950 PF00591 Glycosyl transferase family, a/b domain AYI_RS09955 PF00117 Glutamine amidotransferase class-I AYI_RS09960 PF00425 chorismate binding enzyme AYI_RS09960 PF04715 Anthranilate synthase component I, N terminal region AYI_RS09980 PF00575 S1 RNA binding domain AYI_RS09980 PF10150 Ribonuclease E/G family AYI_RS09995 PF13358 DDE superfamily endonuclease AYI_RS10015 PF13358 DDE superfamily endonuclease