AYI_RS00005 SM00382 ATPases associated with a variety of cellular activities AYI_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AYI_RS00010 SM00480 DNA polymerase III beta subunit AYI_RS00045 SM00935 Outer membrane protein (OmpH-like) AYI_RS00050 SM00450 Rhodanese Homology Domain AYI_RS00060 SM00382 ATPases associated with a variety of cellular activities AYI_RS00150 SM00851 MGS-like domain AYI_RS00150 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AYI_RS00155 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AYI_RS00225 SM00830 Chorismate mutase type II AYI_RS00230 SM00460 Transglutaminase/protease-like homologues AYI_RS00235 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AYI_RS00265 SM00640 Glycosyl hydrolases family 32 AYI_RS00430 SM00563 Phosphate acyltransferases AYI_RS00435 SM00563 Phosphate acyltransferases AYI_RS00465 SM00382 ATPases associated with a variety of cellular activities AYI_RS00465 SM01086 C-terminal, D2-small domain, of ClpB protein AYI_RS00710 SM00672 Putative lipopolysaccharide-modifying enzyme. AYI_RS00715 SM00955 AYI_RS00715 AYI_RS00760 SM00382 ATPases associated with a variety of cellular activities AYI_RS00840 SM00797 Allophanate hydrolase subunit 2 AYI_RS00850 SM00796 Allophanate hydrolase subunit 1 AYI_RS00880 SM00479 AYI_RS00880 AYI_RS00885 SM00841 Elongation factor P, C-terminal AYI_RS00885 SM01185 AYI_RS00885 AYI_RS00910 SM01234 AYI_RS00910 AYI_RS00960 SM00487 DEAD-like helicases superfamily AYI_RS00960 SM00490 helicase superfamily c-terminal domain AYI_RS00990 SM00062 Bacterial periplasmic substrate-binding proteins AYI_RS01045 SM00729 Elongator protein 3, MiaB family, Radical SAM AYI_RS01075 SM00327 von Willebrand factor (vWF) type A domain AYI_RS01080 SM00327 von Willebrand factor (vWF) type A domain AYI_RS01085 SM00028 Tetratricopeptide repeats AYI_RS01235 SM00838 Elongation factor G C-terminus AYI_RS01235 SM00889 Elongation factor G, domain IV AYI_RS01240 SM01403 AYI_RS01240 AYI_RS01260 SM01382 AYI_RS01260 AYI_RS01260 SM01383 AYI_RS01260 AYI_RS01275 SM00322 K homology RNA-binding domain AYI_RS01295 SM01374 AYI_RS01295 AYI_RS01365 SM00363 S4 RNA-binding domain AYI_RS01365 SM01390 AYI_RS01365 AYI_RS01370 SM00662 RNA polymerases D AYI_RS01445 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYI_RS01505 SM00271 DnaJ molecular chaperone homology domain AYI_RS01525 SM00954 Region found in RelA / SpoT proteins AYI_RS01575 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AYI_RS01575 SM00534 ATPase domain of DNA mismatch repair MUTS family AYI_RS01785 SM00729 Elongator protein 3, MiaB family, Radical SAM AYI_RS01945 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AYI_RS01970 SM00382 ATPases associated with a variety of cellular activities AYI_RS01990 SM00679 Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. AYI_RS02060 SM00014 Acid phosphatase homologues AYI_RS02075 SM01209 AYI_RS02075 AYI_RS02075 SM01210 AYI_RS02075 AYI_RS02085 SM01001 AIR carboxylase AYI_RS02230 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AYI_RS02230 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AYI_RS02230 SM00493 AYI_RS02230 AYI_RS02240 SM00470 ParB-like nuclease domain AYI_RS02280 SM00904 Riboflavin kinase AYI_RS02285 SM00919 Malic enzyme, NAD binding domain AYI_RS02285 SM01274 AYI_RS02285 AYI_RS02430 SM00357 Cold shock protein domain AYI_RS02455 SM00434 DNA Topoisomerase IV AYI_RS02500 SM00481 DNA polymerase alpha chain like domain AYI_RS02520 SM00382 ATPases associated with a variety of cellular activities AYI_RS02555 SM00642 Alpha-amylase domain AYI_RS02560 SM00642 Alpha-amylase domain AYI_RS02735 SM00382 ATPases associated with a variety of cellular activities AYI_RS02770 SM00487 DEAD-like helicases superfamily AYI_RS02770 SM00490 helicase superfamily c-terminal domain AYI_RS02795 SM00465 GIY-YIG type nucleases (URI domain) AYI_RS02805 SM00986 Uracil DNA glycosylase superfamily AYI_RS02805 SM00987 UreE urease accessory protein, C-terminal domain AYI_RS02820 SM00434 DNA Topoisomerase IV AYI_RS02835 SM00935 Outer membrane protein (OmpH-like) AYI_RS02920 SM00448 cheY-homologous receiver domain AYI_RS02920 SM00862 Transcriptional regulatory protein, C terminal AYI_RS02930 SM00358 Double-stranded RNA binding motif AYI_RS02930 SM00535 Ribonuclease III family AYI_RS02940 SM00316 Ribosomal protein S1-like RNA-binding domain AYI_RS02940 SM00955 AYI_RS02940 AYI_RS02985 SM00387 Histidine kinase-like ATPases AYI_RS02985 SM00388 His Kinase A (phosphoacceptor) domain AYI_RS03110 SM00382 ATPases associated with a variety of cellular activities AYI_RS03110 SM00487 DEAD-like helicases superfamily AYI_RS03110 SM00490 helicase superfamily c-terminal domain AYI_RS03110 SM00847 Helicase associated domain (HA2) Add an annotation AYI_RS03140 SM00984 UDP binding domain AYI_RS03215 SM00357 Cold shock protein domain AYI_RS03215 SM00382 ATPases associated with a variety of cellular activities AYI_RS03215 SM00959 Rho termination factor, N-terminal domain AYI_RS03245 SM00662 RNA polymerases D AYI_RS03285 SM00382 ATPases associated with a variety of cellular activities AYI_RS03335 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AYI_RS03340 SM00450 Rhodanese Homology Domain AYI_RS03350 SM00849 Metallo-beta-lactamase superfamily AYI_RS03360 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AYI_RS03455 SM00849 Metallo-beta-lactamase superfamily AYI_RS03465 SM00899 AYI_RS03465 AYI_RS03530 SM00382 ATPases associated with a variety of cellular activities AYI_RS03560 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYI_RS03560 SM00292 breast cancer carboxy-terminal domain AYI_RS03560 SM00532 Ligase N family AYI_RS03585 SM00382 ATPases associated with a variety of cellular activities AYI_RS03635 SM00342 helix_turn_helix, arabinose operon control protein AYI_RS03670 SM00382 ATPases associated with a variety of cellular activities AYI_RS03680 SM00047 Lysozyme subfamily 2 AYI_RS03685 SM00363 S4 RNA-binding domain AYI_RS03750 SM00977 TilS substrate C-terminal domain AYI_RS03770 SM00316 Ribosomal protein S1-like RNA-binding domain AYI_RS03890 SM01228 AYI_RS03890 AYI_RS03910 SM00822 AYI_RS03910 AYI_RS03915 SM00479 AYI_RS03915 AYI_RS03920 SM00487 DEAD-like helicases superfamily AYI_RS03920 SM00490 helicase superfamily c-terminal domain AYI_RS04080 SM00671 Sel1-like repeats. AYI_RS04155 SM00965 Secretin and TonB N terminus short domain AYI_RS04285 SM00852 Probable molybdopterin binding domain AYI_RS04305 SM00450 Rhodanese Homology Domain AYI_RS04325 SM00382 ATPases associated with a variety of cellular activities AYI_RS04325 SM00930 AYI_RS04325 AYI_RS04330 SM01207 AYI_RS04330 AYI_RS04375 SM01323 AYI_RS04375 AYI_RS04415 SM00870 AYI_RS04415 AYI_RS04420 SM00947 Carbonic anhydrase AYI_RS04530 SM00477 DNA/RNA non-specific endonuclease AYI_RS04530 SM00892 DNA/RNA non-specific endonuclease AYI_RS04555 SM01091 Transporter associated domain AYI_RS04570 SM00729 Elongator protein 3, MiaB family, Radical SAM AYI_RS04605 SM00382 ATPases associated with a variety of cellular activities AYI_RS04605 SM00994 ClpX C4-type zinc finger AYI_RS04605 SM01086 C-terminal, D2-small domain, of ClpB protein AYI_RS04610 SM00382 ATPases associated with a variety of cellular activities AYI_RS04610 SM00464 Found in ATP-dependent protease La (LON) AYI_RS04615 SM00411 bacterial (prokaryotic) histone like domain AYI_RS04645 SM00244 prohibitin homologues AYI_RS04650 SM00244 prohibitin homologues AYI_RS04655 SM00226 Low molecular weight phosphatase family AYI_RS04705 SM00487 DEAD-like helicases superfamily AYI_RS04705 SM00490 helicase superfamily c-terminal domain AYI_RS04705 SM00982 AYI_RS04705 AYI_RS04705 SM01058 CarD-like/TRCF domain AYI_RS04725 SM00478 endonuclease III AYI_RS04725 SM00525 AYI_RS04725 AYI_RS04750 SM00729 Elongator protein 3, MiaB family, Radical SAM AYI_RS04775 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYI_RS04810 SM01007 Class II Aldolase and Adducin N-terminal domain AYI_RS04865 SM01400 AYI_RS04865 AYI_RS04875 SM01091 Transporter associated domain AYI_RS04930 SM00382 ATPases associated with a variety of cellular activities AYI_RS04930 SM01086 C-terminal, D2-small domain, of ClpB protein AYI_RS04950 SM00363 S4 RNA-binding domain AYI_RS05035 SM00382 ATPases associated with a variety of cellular activities AYI_RS05140 SM00479 AYI_RS05140 AYI_RS05255 SM00729 Elongator protein 3, MiaB family, Radical SAM AYI_RS05265 SM00363 S4 RNA-binding domain AYI_RS05280 SM01126 AYI_RS05280 AYI_RS05315 SM00679 Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. AYI_RS05365 SM00400 zinc finger AYI_RS05365 SM00493 AYI_RS05365 AYI_RS05400 SM00936 Penicillin-binding protein 5, C-terminal domain AYI_RS05425 SM00382 ATPases associated with a variety of cellular activities AYI_RS05455 SM00861 Transketolase, pyrimidine binding domain AYI_RS05480 SM00382 ATPases associated with a variety of cellular activities AYI_RS05495 SM00530 Helix-turn-helix XRE-family like proteins AYI_RS05540 SM00967 RNA 2'-O ribose methyltransferase substrate binding AYI_RS05610 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AYI_RS05665 SM00316 Ribosomal protein S1-like RNA-binding domain AYI_RS05670 SM00450 Rhodanese Homology Domain AYI_RS05715 SM00530 Helix-turn-helix XRE-family like proteins AYI_RS05775 SM00825 Beta-ketoacyl synthase AYI_RS05785 SM00822 AYI_RS05785 AYI_RS05790 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AYI_RS05815 SM00861 Transketolase, pyrimidine binding domain AYI_RS05820 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYI_RS06065 SM00925 MltA specific insert domain AYI_RS06080 SM00271 DnaJ molecular chaperone homology domain AYI_RS06115 SM00873 B3/4 domain AYI_RS06115 SM00874 tRNA synthetase B5 domain AYI_RS06115 SM00896 Ferredoxin-fold anticodon binding domain AYI_RS06125 SM00833 Cobalamin synthesis protein cobW C-terminal domain AYI_RS06140 SM00155 Phospholipase D. Active site motifs. AYI_RS06145 SM00155 Phospholipase D. Active site motifs. AYI_RS06180 SM00460 Transglutaminase/protease-like homologues AYI_RS06185 SM00671 Sel1-like repeats. AYI_RS06190 SM00732 Likely ribonuclease with RNase H fold. AYI_RS06260 SM00382 ATPases associated with a variety of cellular activities AYI_RS06295 SM00316 Ribosomal protein S1-like RNA-binding domain AYI_RS06310 SM00382 ATPases associated with a variety of cellular activities AYI_RS06310 SM00962 SRP54-type protein, GTPase domain AYI_RS06310 SM00963 SRP54-type protein, helical bundle domain AYI_RS06380 SM00487 DEAD-like helicases superfamily AYI_RS06380 SM00490 helicase superfamily c-terminal domain AYI_RS06440 SM00905 Dihydroneopterin aldolase AYI_RS06470 SM00729 Elongator protein 3, MiaB family, Radical SAM AYI_RS06470 SM00876 Biotin and Thiamin Synthesis associated domain AYI_RS06545 SM00981 AYI_RS06545 AYI_RS06665 SM00562 AYI_RS06665 AYI_RS06800 SM01005 Alanine racemase, C-terminal domain AYI_RS06930 SM00357 Cold shock protein domain AYI_RS06945 SM00346 helix_turn_helix isocitrate lyase regulation AYI_RS07020 SM00363 S4 RNA-binding domain AYI_RS07065 SM00830 Chorismate mutase type II AYI_RS07105 SM00072 Guanylate kinase homologues. AYI_RS07110 SM00487 DEAD-like helicases superfamily AYI_RS07110 SM00490 helicase superfamily c-terminal domain AYI_RS07195 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AYI_RS07225 SM00493 AYI_RS07225 AYI_RS07230 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYI_RS07230 SM00954 Region found in RelA / SpoT proteins AYI_RS07330 SM00382 ATPases associated with a variety of cellular activities AYI_RS07355 SM00116 Domain in cystathionine beta-synthase and other proteins. AYI_RS07420 SM00465 GIY-YIG type nucleases (URI domain) AYI_RS07425 SM00474 3'-5' exonuclease AYI_RS07460 SM00957 SecA DEAD-like domain AYI_RS07460 SM00958 SecA preprotein cross-linking domain AYI_RS07495 SM00382 ATPases associated with a variety of cellular activities AYI_RS07535 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain AYI_RS07540 SM00116 Domain in cystathionine beta-synthase and other proteins. AYI_RS07540 SM01240 AYI_RS07540 AYI_RS07635 SM00382 ATPases associated with a variety of cellular activities AYI_RS07640 SM00382 ATPases associated with a variety of cellular activities AYI_RS07670 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYI_RS07715 SM00382 ATPases associated with a variety of cellular activities AYI_RS07745 SM00060 Fibronectin type 3 domain AYI_RS07745 SM00495 Chitin-binding domain type 3 AYI_RS07745 SM00636 AYI_RS07745 AYI_RS07775 SM01192 AYI_RS07775 AYI_RS07775 SM01193 AYI_RS07775 AYI_RS07810 SM01409 AYI_RS07810 AYI_RS07830 SM00316 Ribosomal protein S1-like RNA-binding domain AYI_RS07830 SM00322 K homology RNA-binding domain AYI_RS07835 SM01387 AYI_RS07835 AYI_RS07860 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AYI_RS07860 SM01232 AYI_RS07860 AYI_RS07885 SM00387 Histidine kinase-like ATPases AYI_RS07885 SM00433 TopoisomeraseII AYI_RS07925 SM00881 CoA binding domain AYI_RS08010 SM00853 MutL C terminal dimerisation domain AYI_RS08010 SM01340 AYI_RS08010 AYI_RS08080 SM00878 Biotin carboxylase C-terminal domain AYI_RS08100 SM00650 Ribosomal RNA adenine dimethylases AYI_RS08115 SM00836 DALR anticodon binding domain AYI_RS08115 SM01016 Arginyl tRNA synthetase N terminal dom AYI_RS08125 SM00870 AYI_RS08125 AYI_RS08135 SM01004 Delta-aminolevulinic acid dehydratase AYI_RS08140 SM01103 AYI_RS08140 AYI_RS08230 SM00382 ATPases associated with a variety of cellular activities AYI_RS08305 SM00495 Chitin-binding domain type 3 AYI_RS08380 SM00382 ATPases associated with a variety of cellular activities AYI_RS08415 SM00382 ATPases associated with a variety of cellular activities AYI_RS08415 SM00962 SRP54-type protein, GTPase domain AYI_RS08415 SM00963 SRP54-type protein, helical bundle domain AYI_RS08420 SM00257 Lysin motif AYI_RS08445 SM01133 AYI_RS08445 AYI_RS08460 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AYI_RS08460 SM00474 3'-5' exonuclease AYI_RS08460 SM00475 5'-3' exonuclease AYI_RS08460 SM00482 DNA polymerase A domain AYI_RS08470 SM00382 ATPases associated with a variety of cellular activities AYI_RS08515 SM01126 AYI_RS08515 AYI_RS08540 SM00840 AYI_RS08540 AYI_RS08645 SM00843 AYI_RS08645 AYI_RS08670 SM00945 ProQ/FINO family AYI_RS08705 SM00883 Chaperonin 10 Kd subunit AYI_RS08745 SM00937 AYI_RS08745 AYI_RS08760 SM00564 beta-propeller repeat AYI_RS08770 SM00387 Histidine kinase-like ATPases AYI_RS08770 SM00433 TopoisomeraseII AYI_RS08775 SM00644 AYI_RS08775 AYI_RS08780 SM00014 Acid phosphatase homologues AYI_RS08855 SM00663 RNA polymerase I subunit A N-terminus AYI_RS08880 SM00649 Ribosomal protein L11/L12 AYI_RS08885 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AYI_RS08885 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AYI_RS08970 SM00387 Histidine kinase-like ATPases AYI_RS08970 SM00388 His Kinase A (phosphoacceptor) domain AYI_RS09035 SM00729 Elongator protein 3, MiaB family, Radical SAM AYI_RS09085 SM00861 Transketolase, pyrimidine binding domain AYI_RS09145 SM00382 ATPases associated with a variety of cellular activities AYI_RS09190 SM00363 S4 RNA-binding domain AYI_RS09220 SM00316 Ribosomal protein S1-like RNA-binding domain AYI_RS09220 SM00322 K homology RNA-binding domain AYI_RS09240 SM00382 ATPases associated with a variety of cellular activities AYI_RS09295 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AYI_RS09300 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AYI_RS09375 SM00845 GatB domain AYI_RS09455 SM01211 AYI_RS09455 AYI_RS09535 SM00862 Transcriptional regulatory protein, C terminal AYI_RS09635 SM01230 AYI_RS09635 AYI_RS09640 SM00248 ankyrin repeats AYI_RS09660 SM00937 AYI_RS09660 AYI_RS09665 SM00382 ATPases associated with a variety of cellular activities AYI_RS09675 SM00864 Tubulin/FtsZ family, GTPase domain AYI_RS09675 SM00865 Tubulin/FtsZ family, C-terminal domain AYI_RS09680 SM00842 Cell division protein FtsA AYI_RS09700 SM00316 Ribosomal protein S1-like RNA-binding domain AYI_RS09715 SM00563 Phosphate acyltransferases AYI_RS09745 SM00382 ATPases associated with a variety of cellular activities AYI_RS09785 SM00798 AICARFT/IMPCHase bienzyme AYI_RS09785 SM00851 MGS-like domain AYI_RS09790 SM00788 Adenylosuccinate synthetase AYI_RS09810 SM00382 ATPases associated with a variety of cellular activities AYI_RS09845 SM00487 DEAD-like helicases superfamily AYI_RS09865 SM00382 ATPases associated with a variety of cellular activities AYI_RS09905 SM01126 AYI_RS09905 AYI_RS09980 SM00316 Ribosomal protein S1-like RNA-binding domain