locus-tag class description RN87_RS00015 PF15526 Novel toxin 21 RN87_RS00015 PF13332 Hemagglutinin repeat RN87_RS00015 PF05594 Haemagluttinin repeat RN87_RS00015 PF04829 Pre-toxin domain with VENN motif RN87_RS00015 PF15526 Novel toxin 21 RN87_RS00015 PF04829 Pre-toxin domain with VENN motif RN87_RS00015 PF05860 haemagglutination activity domain RN87_RS00015 PF13332 Hemagglutinin repeat RN87_RS00015 PF05594 Haemagluttinin repeat RN87_RS00015 PF05860 haemagglutination activity domain RN87_RS00020 PF08479 POTRA domain, ShlB-type RN87_RS00020 PF17287 POTRA domain RN87_RS00020 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RN87_RS00025 PF00664 ABC transporter transmembrane region RN87_RS00025 PF00005 ABC transporter RN87_RS00030 PF00005 ABC transporter RN87_RS00030 PF00664 ABC transporter transmembrane region RN87_RS00045 PF00571 CBS domain RN87_RS00045 PF01368 DHH family RN87_RS00045 PF02833 DHHA2 domain RN87_RS00045 PF07085 DRTGG domain RN87_RS00060 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) RN87_RS00075 PF16325 Peptidase family U32 C-terminal domain RN87_RS00075 PF01136 Peptidase family U32 RN87_RS00080 PF00772 DnaB-like helicase N terminal domain RN87_RS00080 PF03796 DnaB-like helicase C terminal domain RN87_RS00085 PF01281 Ribosomal protein L9, N-terminal domain RN87_RS00085 PF03948 Ribosomal protein L9, C-terminal domain RN87_RS00095 PF12169 DNA polymerase III subunits gamma and tau domain III RN87_RS00100 PF00072 Response regulator receiver domain RN87_RS00100 PF02954 Bacterial regulatory protein, Fis family RN87_RS00100 PF00158 Sigma-54 interaction domain RN87_RS00110 PF02472 Biopolymer transport protein ExbD/TolR RN87_RS00115 PF01618 MotA/TolQ/ExbB proton channel family RN87_RS00140 PF00691 OmpA family RN87_RS00140 PF13488 Glycine zipper RN87_RS00170 PF00486 Transcriptional regulatory protein, C terminal RN87_RS00170 PF00072 Response regulator receiver domain RN87_RS00175 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RN87_RS00175 PF00072 Response regulator receiver domain RN87_RS00175 PF01627 Hpt domain RN87_RS00175 PF00512 His Kinase A (phospho-acceptor) domain RN87_RS00175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN87_RS00175 PF00672 HAMP domain RN87_RS00180 PF00465 Iron-containing alcohol dehydrogenase RN87_RS00185 PF00936 BMC domain RN87_RS00190 PF02286 Dehydratase large subunit RN87_RS00195 PF02288 Dehydratase medium subunit RN87_RS00200 PF02287 Dehydratase small subunit RN87_RS00205 PF08841 Diol dehydratase reactivase ATPase-like domain RN87_RS00205 PF18427 DD-reactivating factor swiveling domain RN87_RS00215 PF00936 BMC domain RN87_RS00215 PF16365 Ethanolamine utilization protein EutK C-terminus RN87_RS00220 PF00936 BMC domain RN87_RS00225 PF06130 Phosphate propanoyltransferase RN87_RS00240 PF03928 Haem-degrading RN87_RS00245 PF00171 Aldehyde dehydrogenase family RN87_RS00250 PF00230 Major intrinsic protein RN87_RS00255 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RN87_RS00255 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RN87_RS00260 PF02733 Dak1 domain RN87_RS00265 PF02734 DAK2 domain RN87_RS00270 PF05524 PEP-utilising enzyme, N-terminal RN87_RS00270 PF00391 PEP-utilising enzyme, mobile domain RN87_RS00270 PF00381 PTS HPr component phosphorylation site RN87_RS00270 PF03610 PTS system fructose IIA component RN87_RS00280 PF00106 short chain dehydrogenase RN87_RS00300 PF01370 NAD dependent epimerase/dehydratase family RN87_RS00315 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RN87_RS00315 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RN87_RS00320 PF03725 3' exoribonuclease family, domain 2 RN87_RS00320 PF01138 3' exoribonuclease family, domain 1 RN87_RS00330 PF02310 B12 binding domain RN87_RS00335 PF13941 MutL protein RN87_RS00340 PF06368 Methylaspartate mutase E chain (MutE) RN87_RS00345 PF01144 Coenzyme A transferase RN87_RS00350 PF01144 Coenzyme A transferase RN87_RS00355 PF02667 Short chain fatty acid transporter RN87_RS00365 PF03553 Na+/H+ antiporter family RN87_RS00375 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase RN87_RS00375 PF02310 B12 binding domain RN87_RS00380 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit RN87_RS00385 PF00488 MutS domain V RN87_RS00385 PF01713 Smr domain RN87_RS00395 PF12544 Lysine-2,3-aminomutase RN87_RS00395 PF04055 Radical SAM superfamily RN87_RS00405 PF05853 beta-keto acid cleavage enzyme RN87_RS00410 PF03061 Thioesterase superfamily RN87_RS00425 PF01230 HIT domain RN87_RS00430 PF02502 Ribose/Galactose Isomerase RN87_RS00435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RN87_RS00455 PF01649 Ribosomal protein S20 RN87_RS00475 PF03006 Haemolysin-III related RN87_RS00485 PF03009 Glycerophosphoryl diester phosphodiesterase family RN87_RS00490 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RN87_RS00510 PF00005 ABC transporter RN87_RS00535 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RN87_RS00535 PF07992 Pyridine nucleotide-disulphide oxidoreductase RN87_RS00540 PF01638 HxlR-like helix-turn-helix RN87_RS00545 PF02789 Cytosol aminopeptidase family, N-terminal domain RN87_RS00545 PF00883 Cytosol aminopeptidase family, catalytic domain RN87_RS00550 PF01205 Uncharacterized protein family UPF0029 RN87_RS00550 PF09186 Domain of unknown function (DUF1949) RN87_RS00555 PF04463 Protein of unknown function (DUF523) RN87_RS00565 PF00709 Adenylosuccinate synthetase RN87_RS00570 PF02390 Putative methyltransferase RN87_RS00570 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RN87_RS00575 PF02224 Cytidylate kinase RN87_RS00580 PF13749 Putative ATP-dependent DNA helicase recG C-terminal RN87_RS00580 PF00270 DEAD/DEAH box helicase RN87_RS00580 PF17191 RecG wedge domain RN87_RS00590 PF13277 YmdB-like protein RN87_RS00605 PF01430 Hsp33 protein RN87_RS00615 PF04055 Radical SAM superfamily RN87_RS00620 PF00437 Type II/IV secretion system protein RN87_RS00625 PF01078 Magnesium chelatase, subunit ChlI RN87_RS00625 PF13335 Magnesium chelatase, subunit ChlI C-terminal RN87_RS00630 PF02659 Putative manganese efflux pump RN87_RS00635 PF01029 NusB family RN87_RS00655 PF00318 Ribosomal protein S2 RN87_RS00660 PF00889 Elongation factor TS RN87_RS00665 PF00696 Amino acid kinase family RN87_RS00670 PF01765 Ribosome recycling factor RN87_RS00675 PF00344 SecY translocase RN87_RS00680 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RN87_RS00685 PF00327 Ribosomal protein L30p/L7e RN87_RS00690 PF03719 Ribosomal protein S5, C-terminal domain RN87_RS00690 PF00333 Ribosomal protein S5, N-terminal domain RN87_RS00695 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RN87_RS00700 PF00347 Ribosomal protein L6 RN87_RS00705 PF00410 Ribosomal protein S8 RN87_RS00710 PF00253 Ribosomal protein S14p/S29e RN87_RS00715 PF00281 Ribosomal protein L5 RN87_RS00715 PF00673 ribosomal L5P family C-terminus RN87_RS00720 PF00467 KOW motif RN87_RS00720 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RN87_RS00725 PF00238 Ribosomal protein L14p/L23e RN87_RS00730 PF00366 Ribosomal protein S17 RN87_RS00735 PF00831 Ribosomal L29 protein RN87_RS00740 PF00252 Ribosomal protein L16p/L10e RN87_RS00745 PF07650 KH domain RN87_RS00745 PF00189 Ribosomal protein S3, C-terminal domain RN87_RS00750 PF00237 Ribosomal protein L22p/L17e RN87_RS00755 PF00203 Ribosomal protein S19 RN87_RS00760 PF03947 Ribosomal Proteins L2, C-terminal domain RN87_RS00760 PF00181 Ribosomal Proteins L2, RNA binding domain RN87_RS00765 PF00276 Ribosomal protein L23 RN87_RS00770 PF00573 Ribosomal protein L4/L1 family RN87_RS00775 PF00297 Ribosomal protein L3 RN87_RS00780 PF00338 Ribosomal protein S10p/S20e RN87_RS00795 PF01554 MatE RN87_RS00805 PF01435 Peptidase family M48 RN87_RS00810 PF01084 Ribosomal protein S18 RN87_RS00815 PF01250 Ribosomal protein S6 RN87_RS00820 PF04073 Aminoacyl-tRNA editing domain RN87_RS00820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RN87_RS00820 PF03129 Anticodon binding domain RN87_RS00825 PF17191 RecG wedge domain RN87_RS00825 PF00271 Helicase conserved C-terminal domain RN87_RS00825 PF00270 DEAD/DEAH box helicase RN87_RS00830 PF01709 Transcriptional regulator RN87_RS00860 PF16363 GDP-mannose 4,6 dehydratase RN87_RS00890 PF00483 Nucleotidyl transferase RN87_RS00910 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RN87_RS00915 PF08889 WbqC-like protein family RN87_RS00940 PF13439 Glycosyltransferase Family 4 RN87_RS00940 PF00534 Glycosyl transferases group 1 RN87_RS00945 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RN87_RS00945 PF10518 TAT (twin-arginine translocation) pathway signal sequence RN87_RS00955 PF00132 Bacterial transferase hexapeptide (six repeats) RN87_RS00955 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RN87_RS00965 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RN87_RS00965 PF00132 Bacterial transferase hexapeptide (six repeats) RN87_RS00970 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RN87_RS00975 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RN87_RS00975 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RN87_RS00975 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RN87_RS00985 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RN87_RS00990 PF02397 Bacterial sugar transferase RN87_RS00995 PF02719 Polysaccharide biosynthesis protein RN87_RS01005 PF04321 RmlD substrate binding domain RN87_RS01010 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RN87_RS01015 PF02673 Bacitracin resistance protein BacA RN87_RS01020 PF01370 NAD dependent epimerase/dehydratase family RN87_RS01025 PF01734 Patatin-like phospholipase RN87_RS01030 PF01925 Sulfite exporter TauE/SafE RN87_RS01035 PF01263 Aldose 1-epimerase RN87_RS01040 PF00575 S1 RNA binding domain RN87_RS01040 PF00013 KH domain RN87_RS01040 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RN87_RS01040 PF01138 3' exoribonuclease family, domain 1 RN87_RS01040 PF03725 3' exoribonuclease family, domain 2 RN87_RS01045 PF01066 CDP-alcohol phosphatidyltransferase RN87_RS01055 PF01795 MraW methylase family RN87_RS01070 PF05958 tRNA (Uracil-5-)-methyltransferase RN87_RS01085 PF02562 PhoH-like protein RN87_RS01085 PF13638 PIN domain RN87_RS01095 PF00004 ATPase family associated with various cellular activities (AAA) RN87_RS01095 PF07724 AAA domain (Cdc48 subfamily) RN87_RS01095 PF10431 C-terminal, D2-small domain, of ClpB protein RN87_RS01095 PF02861 Clp amino terminal domain, pathogenicity island component RN87_RS01095 PF17871 AAA lid domain RN87_RS01100 PF04055 Radical SAM superfamily RN87_RS01120 PF00440 Bacterial regulatory proteins, tetR family RN87_RS01130 PF13173 AAA domain RN87_RS01130 PF13635 Domain of unknown function (DUF4143) RN87_RS01145 PF00533 BRCA1 C Terminus (BRCT) domain RN87_RS01145 PF12826 Helix-hairpin-helix motif RN87_RS01145 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RN87_RS01145 PF03120 NAD-dependent DNA ligase OB-fold domain RN87_RS01145 PF01653 NAD-dependent DNA ligase adenylation domain RN87_RS01150 PF02810 SEC-C motif RN87_RS01150 PF01043 SecA preprotein cross-linking domain RN87_RS01150 PF07516 SecA Wing and Scaffold domain RN87_RS01150 PF07517 SecA DEAD-like domain RN87_RS01160 PF02527 rRNA small subunit methyltransferase G RN87_RS01165 PF01134 Glucose inhibited division protein A RN87_RS01165 PF13932 GidA associated domain RN87_RS01170 PF02254 TrkA-N domain RN87_RS01170 PF02080 TrkA-C domain RN87_RS01175 PF02386 Cation transport protein RN87_RS01180 PF01554 MatE RN87_RS01185 PF00654 Voltage gated chloride channel RN87_RS01190 PF01470 Pyroglutamyl peptidase RN87_RS01195 PF01063 Amino-transferase class IV RN87_RS01200 PF04715 Anthranilate synthase component I, N terminal region RN87_RS01200 PF00425 chorismate binding enzyme RN87_RS01205 PF00117 Glutamine amidotransferase class-I RN87_RS01215 PF01813 ATP synthase subunit D RN87_RS01220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RN87_RS01220 PF02874 ATP synthase alpha/beta family, beta-barrel domain RN87_RS01225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RN87_RS01225 PF02874 ATP synthase alpha/beta family, beta-barrel domain RN87_RS01225 PF16886 ATPsynthase alpha/beta subunit N-term extension RN87_RS01230 PF01990 ATP synthase (F/14-kDa) subunit RN87_RS01235 PF01992 ATP synthase (C/AC39) subunit RN87_RS01240 PF01991 ATP synthase (E/31 kDa) subunit RN87_RS01245 PF00137 ATP synthase subunit C RN87_RS01250 PF01496 V-type ATPase 116kDa subunit family RN87_RS01260 PF02581 Thiamine monophosphate synthase RN87_RS01270 PF05690 Thiazole biosynthesis protein ThiG RN87_RS01275 PF00899 ThiF family RN87_RS01285 PF01964 Radical SAM ThiC family RN87_RS01290 PF02581 Thiamine monophosphate synthase RN87_RS01295 PF08543 Phosphomethylpyrimidine kinase RN87_RS01300 PF00005 ABC transporter RN87_RS01315 PF13847 Methyltransferase domain RN87_RS01330 PF03883 Peroxide stress protein YaaA RN87_RS01340 PF01042 Endoribonuclease L-PSP RN87_RS01355 PF02661 Fic/DOC family RN87_RS01355 PF12728 Helix-turn-helix domain RN87_RS01360 PF00270 DEAD/DEAH box helicase RN87_RS01360 PF00271 Helicase conserved C-terminal domain RN87_RS01365 PF02618 YceG-like family RN87_RS01370 PF11734 TilS substrate C-terminal domain RN87_RS01370 PF01171 PP-loop family RN87_RS01375 PF01434 Peptidase family M41 RN87_RS01375 PF17862 AAA+ lid domain RN87_RS01375 PF00004 ATPase family associated with various cellular activities (AAA) RN87_RS01375 PF06480 FtsH Extracellular RN87_RS01380 PF00312 Ribosomal protein S15 RN87_RS01395 PF03606 C4-dicarboxylate anaerobic carrier RN87_RS01400 PF01418 Helix-turn-helix domain, rpiR family RN87_RS01400 PF01380 SIS domain RN87_RS01405 PF00578 AhpC/TSA family RN87_RS01410 PF07992 Pyridine nucleotide-disulphide oxidoreductase RN87_RS01415 PF06123 Inner membrane protein CreD RN87_RS01425 PF07729 FCD domain RN87_RS01425 PF00392 Bacterial regulatory proteins, gntR family RN87_RS01430 PF01212 Beta-eliminating lyase RN87_RS01435 PF00209 Sodium:neurotransmitter symporter family RN87_RS01440 PF00226 DnaJ domain RN87_RS01440 PF00684 DnaJ central domain RN87_RS01440 PF01556 DnaJ C terminal domain RN87_RS01445 PF14602 Hexapeptide repeat of succinyl-transferase RN87_RS01445 PF00132 Bacterial transferase hexapeptide (six repeats) RN87_RS01445 PF00483 Nucleotidyl transferase RN87_RS01450 PF14572 Phosphoribosyl synthetase-associated domain RN87_RS01450 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RN87_RS01455 PF01300 Telomere recombination RN87_RS01470 PF02592 Putative vitamin uptake transporter RN87_RS01495 PF00085 Thioredoxin RN87_RS01500 PF00465 Iron-containing alcohol dehydrogenase RN87_RS01520 PF04346 Ethanolamine utilisation protein, EutH RN87_RS01545 PF00465 Iron-containing alcohol dehydrogenase RN87_RS01545 PF00171 Aldehyde dehydrogenase family RN87_RS01550 PF00936 BMC domain RN87_RS01555 PF00936 BMC domain RN87_RS01560 PF00936 BMC domain RN87_RS01565 PF05985 Ethanolamine ammonia-lyase light chain (EutC) RN87_RS01570 PF06751 Ethanolamine ammonia lyase large subunit (EutB) RN87_RS01575 PF06277 Ethanolamine utilisation protein EutA RN87_RS01580 PF12282 Signal transduction histidine kinase RN87_RS01580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN87_RS01580 PF07568 Histidine kinase RN87_RS01585 PF00072 Response regulator receiver domain RN87_RS01585 PF03861 ANTAR domain RN87_RS01590 PF00009 Elongation factor Tu GTP binding domain RN87_RS01590 PF03144 Elongation factor Tu domain 2 RN87_RS01590 PF00679 Elongation factor G C-terminus RN87_RS01590 PF06421 GTP-binding protein LepA C-terminus RN87_RS01595 PF00936 BMC domain RN87_RS01600 PF00809 Pterin binding enzyme RN87_RS01605 PF02152 Dihydroneopterin aldolase RN87_RS01605 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RN87_RS01610 PF01227 GTP cyclohydrolase I RN87_RS01615 PF05746 DALR anticodon binding domain RN87_RS01615 PF02092 Glycyl-tRNA synthetase beta subunit RN87_RS01620 PF02091 Glycyl-tRNA synthetase alpha subunit RN87_RS01625 PF01252 Signal peptidase (SPase) II RN87_RS01630 PF08264 Anticodon-binding domain of tRNA RN87_RS01630 PF00133 tRNA synthetases class I (I, L, M and V) RN87_RS01630 PF06827 Zinc finger found in FPG and IleRS RN87_RS01635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN87_RS01635 PF00512 His Kinase A (phospho-acceptor) domain RN87_RS01640 PF17674 HHH domain RN87_RS01640 PF00575 S1 RNA binding domain RN87_RS01640 PF09371 Tex-like protein N-terminal domain RN87_RS01640 PF16921 Tex protein YqgF-like domain RN87_RS01675 PF08241 Methyltransferase domain RN87_RS01695 PF00368 Hydroxymethylglutaryl-coenzyme A reductase RN87_RS01710 PF00158 Sigma-54 interaction domain RN87_RS01710 PF00989 PAS fold RN87_RS01710 PF02954 Bacterial regulatory protein, Fis family RN87_RS01730 PF02074 Carboxypeptidase Taq (M32) metallopeptidase RN87_RS01740 PF01592 NifU-like N terminal domain RN87_RS01745 PF00266 Aminotransferase class-V RN87_RS01750 PF00730 HhH-GPD superfamily base excision DNA repair protein RN87_RS01750 PF00633 Helix-hairpin-helix motif RN87_RS01760 PF00578 AhpC/TSA family RN87_RS01765 PF01966 HD domain RN87_RS01770 PF01235 Sodium:alanine symporter family RN87_RS01775 PF07685 CobB/CobQ-like glutamine amidotransferase domain RN87_RS01790 PF00156 Phosphoribosyl transferase domain RN87_RS01795 PF03553 Na+/H+ antiporter family RN87_RS01810 PF00005 ABC transporter RN87_RS01810 PF09383 NIL domain RN87_RS01815 PF02653 Branched-chain amino acid transport system / permease component RN87_RS01830 PF01268 Formate--tetrahydrofolate ligase RN87_RS01850 PF00579 tRNA synthetases class I (W and Y) RN87_RS01855 PF05525 Branched-chain amino acid transport protein RN87_RS01860 PF03960 ArsC family RN87_RS01865 PF14537 Cytochrome c3 RN87_RS01865 PF00890 FAD binding domain RN87_RS01880 PF13344 Haloacid dehalogenase-like hydrolase RN87_RS01890 PF03372 Endonuclease/Exonuclease/phosphatase family RN87_RS01895 PF01220 Dehydroquinase class II RN87_RS01900 PF08501 Shikimate dehydrogenase substrate binding domain RN87_RS01915 PF01098 Cell cycle protein RN87_RS01920 PF05979 Bacterial protein of unknown function (DUF896) RN87_RS01925 PF01336 OB-fold nucleic acid binding domain RN87_RS01925 PF00152 tRNA synthetases class II (D, K and N) RN87_RS01930 PF13331 Domain of unknown function (DUF4093) RN87_RS01930 PF01751 Toprim domain RN87_RS01970 PF12728 Helix-turn-helix domain RN87_RS01970 PF02661 Fic/DOC family RN87_RS01975 PF00920 Dehydratase family RN87_RS01980 PF00291 Pyridoxal-phosphate dependent enzyme RN87_RS01980 PF13291 ACT domain RN87_RS01985 PF00205 Thiamine pyrophosphate enzyme, central domain RN87_RS01985 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RN87_RS01985 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RN87_RS01990 PF10369 Small subunit of acetolactate synthase RN87_RS01995 PF08502 LeuA allosteric (dimerisation) domain RN87_RS01995 PF00682 HMGL-like RN87_RS02000 PF00330 Aconitase family (aconitate hydratase) RN87_RS02005 PF00694 Aconitase C-terminal domain RN87_RS02010 PF00180 Isocitrate/isopropylmalate dehydrogenase RN87_RS02015 PF00005 ABC transporter RN87_RS02020 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RN87_RS02020 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RN87_RS02045 PF04226 Transglycosylase associated protein RN87_RS02065 PF07715 TonB-dependent Receptor Plug Domain RN87_RS02065 PF00593 TonB dependent receptor RN87_RS02090 PF00258 Flavodoxin RN87_RS02125 PF03606 C4-dicarboxylate anaerobic carrier RN87_RS02130 PF04026 SpoVG RN87_RS02140 PF01479 S4 domain RN87_RS02145 PF02559 CarD-like/TRCF domain RN87_RS02145 PF03461 TRCF domain RN87_RS02145 PF00271 Helicase conserved C-terminal domain RN87_RS02145 PF17757 UvrB interaction domain RN87_RS02145 PF00270 DEAD/DEAH box helicase RN87_RS02180 PF05191 Adenylate kinase, active site lid RN87_RS02185 PF04221 RelB antitoxin RN87_RS02190 PF02829 3H domain RN87_RS02190 PF08279 HTH domain RN87_RS02195 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RN87_RS02195 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RN87_RS02200 PF00890 FAD binding domain RN87_RS02205 PF02445 Quinolinate synthetase A protein RN87_RS02210 PF01134 Glucose inhibited division protein A RN87_RS02210 PF13932 GidA associated domain RN87_RS02215 PF10396 GTP-binding protein TrmE N-terminus RN87_RS02215 PF01926 50S ribosome-binding GTPase RN87_RS02215 PF12631 MnmE helical domain RN87_RS02220 PF14804 Jag N-terminus RN87_RS02220 PF01424 R3H domain RN87_RS02225 PF02096 60Kd inner membrane protein RN87_RS02230 PF01809 Putative membrane protein insertion efficiency factor RN87_RS02235 PF00825 Ribonuclease P RN87_RS02240 PF00468 Ribosomal protein L34 RN87_RS02255 PF02463 RecF/RecN/SMC N terminal domain RN87_RS02265 PF00204 DNA gyrase B RN87_RS02265 PF00986 DNA gyrase B subunit, carboxyl terminus RN87_RS02265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN87_RS02265 PF01751 Toprim domain RN87_RS02270 PF03989 DNA gyrase C-terminal domain, beta-propeller RN87_RS02270 PF00521 DNA gyrase/topoisomerase IV, subunit A RN87_RS02280 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RN87_RS02280 PF01409 tRNA synthetases class II core domain (F) RN87_RS02285 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RN87_RS02285 PF01588 Putative tRNA binding domain RN87_RS02285 PF03147 Ferredoxin-fold anticodon binding domain RN87_RS02285 PF03484 tRNA synthetase B5 domain RN87_RS02285 PF03483 B3/4 domain RN87_RS02305 PF01235 Sodium:alanine symporter family RN87_RS02310 PF16363 GDP-mannose 4,6 dehydratase RN87_RS02315 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain RN87_RS02315 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain RN87_RS02320 PF00288 GHMP kinases N terminal domain RN87_RS02320 PF10509 Galactokinase galactose-binding signature RN87_RS02320 PF08544 GHMP kinases C terminal RN87_RS02325 PF07282 Putative transposase DNA-binding domain RN87_RS02325 PF01385 Probable transposase RN87_RS02325 PF12323 Helix-turn-helix domain RN87_RS02330 PF03781 Sulfatase-modifying factor enzyme 1 RN87_RS02335 PF01970 Tripartite tricarboxylate transporter TctA family RN87_RS02345 PF03401 Tripartite tricarboxylate transporter family receptor RN87_RS02355 PF12848 ABC transporter RN87_RS02355 PF16326 ABC transporter C-terminal domain RN87_RS02355 PF00005 ABC transporter RN87_RS02360 PF00892 EamA-like transporter family RN87_RS02370 PF04304 Protein of unknown function (DUF454) RN87_RS02375 PF10609 NUBPL iron-transfer P-loop NTPase RN87_RS02400 PF00437 Type II/IV secretion system protein RN87_RS02405 PF00482 Type II secretion system (T2SS), protein F RN87_RS02410 PF00114 Pilin (bacterial filament) RN87_RS02410 PF07963 Prokaryotic N-terminal methylation motif RN87_RS02445 PF00263 Bacterial type II and III secretion system protein RN87_RS02445 PF03958 Bacterial type II/III secretion system short domain RN87_RS02470 PF00342 Phosphoglucose isomerase RN87_RS02475 PF00375 Sodium:dicarboxylate symporter family RN87_RS02480 PF01797 Transposase IS200 like RN87_RS02505 PF13488 Glycine zipper RN87_RS02505 PF00691 OmpA family RN87_RS02535 PF00691 OmpA family RN87_RS02535 PF13488 Glycine zipper RN87_RS02545 PF04226 Transglycosylase associated protein RN87_RS02565 PF01475 Ferric uptake regulator family RN87_RS02575 PF00471 Ribosomal protein L33 RN87_RS02590 PF02357 Transcription termination factor nusG RN87_RS02595 PF00298 Ribosomal protein L11, RNA binding domain RN87_RS02595 PF03946 Ribosomal protein L11, N-terminal domain RN87_RS02600 PF00687 Ribosomal protein L1p/L10e family RN87_RS02605 PF00466 Ribosomal protein L10 RN87_RS02610 PF16320 Ribosomal protein L7/L12 dimerisation domain RN87_RS02610 PF00542 Ribosomal protein L7/L12 C-terminal domain RN87_RS02615 PF04560 RNA polymerase Rpb2, domain 7 RN87_RS02615 PF00562 RNA polymerase Rpb2, domain 6 RN87_RS02615 PF04565 RNA polymerase Rpb2, domain 3 RN87_RS02615 PF10385 RNA polymerase beta subunit external 1 domain RN87_RS02615 PF04563 RNA polymerase beta subunit RN87_RS02615 PF04561 RNA polymerase Rpb2, domain 2 RN87_RS02620 PF04998 RNA polymerase Rpb1, domain 5 RN87_RS02620 PF04983 RNA polymerase Rpb1, domain 3 RN87_RS02620 PF00623 RNA polymerase Rpb1, domain 2 RN87_RS02620 PF04997 RNA polymerase Rpb1, domain 1 RN87_RS02620 PF05000 RNA polymerase Rpb1, domain 4 RN87_RS02625 PF08340 Domain of unknown function (DUF1732) RN87_RS02625 PF03755 YicC-like family, N-terminal region RN87_RS02630 PF00625 Guanylate kinase RN87_RS02640 PF02424 ApbE family RN87_RS02645 PF03030 Inorganic H+ pyrophosphatase RN87_RS02650 PF01757 Acyltransferase family RN87_RS02680 PF02576 RimP N-terminal domain RN87_RS02680 PF17384 RimP C-terminal SH3 domain RN87_RS02685 PF13184 NusA-like KH domain RN87_RS02685 PF08529 NusA N-terminal domain RN87_RS02685 PF00575 S1 RNA binding domain RN87_RS02695 PF11987 Translation-initiation factor 2 RN87_RS02695 PF04760 Translation initiation factor IF-2, N-terminal region RN87_RS02695 PF00009 Elongation factor Tu GTP binding domain RN87_RS02700 PF02033 Ribosome-binding factor A RN87_RS02705 PF02272 DHHA1 domain RN87_RS02705 PF10141 Single-strand DNA-specific exonuclease, C terminal domain RN87_RS02705 PF17768 RecJ OB domain RN87_RS02705 PF01368 DHH family RN87_RS02710 PF05697 Bacterial trigger factor protein (TF) RN87_RS02710 PF05698 Bacterial trigger factor protein (TF) C-terminus RN87_RS02710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RN87_RS02715 PF00574 Clp protease RN87_RS02720 PF10431 C-terminal, D2-small domain, of ClpB protein RN87_RS02720 PF07724 AAA domain (Cdc48 subfamily) RN87_RS02720 PF06689 ClpX C4-type zinc finger RN87_RS02725 PF02190 ATP-dependent protease La (LON) substrate-binding domain RN87_RS02725 PF05362 Lon protease (S16) C-terminal proteolytic domain RN87_RS02725 PF00004 ATPase family associated with various cellular activities (AAA) RN87_RS02730 PF01926 50S ribosome-binding GTPase RN87_RS02760 PF08264 Anticodon-binding domain of tRNA RN87_RS02760 PF00133 tRNA synthetases class I (I, L, M and V) RN87_RS02760 PF10458 Valyl tRNA synthetase tRNA binding arm RN87_RS02765 PF01047 MarR family RN87_RS02770 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS02775 PF00005 ABC transporter RN87_RS02780 PF00255 Glutathione peroxidase RN87_RS02785 PF02361 Cobalt transport protein RN87_RS02790 PF00005 ABC transporter RN87_RS02795 PF00005 ABC transporter RN87_RS02800 PF02632 BioY family RN87_RS02815 PF00970 Oxidoreductase FAD-binding domain RN87_RS02815 PF00175 Oxidoreductase NAD-binding domain RN87_RS02815 PF00111 2Fe-2S iron-sulfur cluster binding domain RN87_RS02825 PF02867 Ribonucleotide reductase, barrel domain RN87_RS02825 PF03477 ATP cone domain RN87_RS02825 PF00317 Ribonucleotide reductase, all-alpha domain RN87_RS02830 PF00268 Ribonucleotide reductase, small chain RN87_RS02845 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system RN87_RS02860 PF01613 Flavin reductase like domain RN87_RS02870 PF00474 Sodium:solute symporter family RN87_RS02875 PF17676 LD-carboxypeptidase C-terminal domain RN87_RS02875 PF02016 LD-carboxypeptidase N-terminal domain RN87_RS02885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RN87_RS02885 PF02403 Seryl-tRNA synthetase N-terminal domain RN87_RS02910 PF01628 HrcA protein C terminal domain RN87_RS02915 PF01025 GrpE RN87_RS02920 PF00012 Hsp70 protein RN87_RS02925 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RN87_RS02925 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RN87_RS02930 PF00226 DnaJ domain RN87_RS02930 PF01556 DnaJ C terminal domain RN87_RS02930 PF00684 DnaJ central domain RN87_RS02960 PF01926 50S ribosome-binding GTPase RN87_RS02960 PF01018 GTP1/OBG RN87_RS02960 PF04055 Radical SAM superfamily RN87_RS02985 PF02492 CobW/HypB/UreG, nucleotide-binding domain RN87_RS02990 PF00005 ABC transporter RN87_RS03005 PF13333 Integrase core domain RN87_RS03005 PF13276 HTH-like domain RN87_RS03005 PF00665 Integrase core domain RN87_RS03025 PF01297 Zinc-uptake complex component A periplasmic RN87_RS03035 PF00005 ABC transporter RN87_RS03040 PF00950 ABC 3 transport family RN87_RS03070 PF07687 Peptidase dimerisation domain RN87_RS03070 PF01546 Peptidase family M20/M25/M40 RN87_RS03075 PF00440 Bacterial regulatory proteins, tetR family RN87_RS03080 PF03616 Sodium/glutamate symporter RN87_RS03090 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RN87_RS03095 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS03100 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS03105 PF00005 ABC transporter RN87_RS03105 PF08402 TOBE domain RN87_RS03115 PF00381 PTS HPr component phosphorylation site RN87_RS03120 PF00391 PEP-utilising enzyme, mobile domain RN87_RS03120 PF05524 PEP-utilising enzyme, N-terminal RN87_RS03120 PF02896 PEP-utilising enzyme, TIM barrel domain RN87_RS03130 PF00293 NUDIX domain RN87_RS03135 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP RN87_RS03140 PF01554 MatE RN87_RS03145 PF02542 YgbB family RN87_RS03155 PF00294 pfkB family carbohydrate kinase RN87_RS03155 PF01467 Cytidylyltransferase-like RN87_RS03195 PF00381 PTS HPr component phosphorylation site RN87_RS03200 PF00575 S1 RNA binding domain RN87_RS03200 PF02401 LytB protein RN87_RS03280 PF02887 Pyruvate kinase, alpha/beta domain RN87_RS03280 PF00224 Pyruvate kinase, barrel domain RN87_RS03285 PF00113 Enolase, C-terminal TIM barrel domain RN87_RS03285 PF03952 Enolase, N-terminal domain RN87_RS03295 PF00593 TonB dependent receptor RN87_RS03295 PF07715 TonB-dependent Receptor Plug Domain RN87_RS03305 PF01032 FecCD transport family RN87_RS03310 PF00005 ABC transporter RN87_RS03345 PF06480 FtsH Extracellular RN87_RS03345 PF00004 ATPase family associated with various cellular activities (AAA) RN87_RS03345 PF17862 AAA+ lid domain RN87_RS03345 PF01434 Peptidase family M41 RN87_RS03415 PF01661 Macro domain RN87_RS03420 PF05195 Aminopeptidase P, N-terminal domain RN87_RS03420 PF00557 Metallopeptidase family M24 RN87_RS03440 PF00209 Sodium:neurotransmitter symporter family RN87_RS03445 PF01212 Beta-eliminating lyase RN87_RS03450 PF08348 YheO-like PAS domain RN87_RS03450 PF13309 HTH domain RN87_RS03465 PF07728 AAA domain (dynein-related subfamily) RN87_RS03465 PF12102 Domain of unknown function (DUF3578) RN87_RS03465 PF12102 Domain of unknown function (DUF3578) RN87_RS03465 PF07728 AAA domain (dynein-related subfamily) RN87_RS03475 PF00004 ATPase family associated with various cellular activities (AAA) RN87_RS03475 PF07724 AAA domain (Cdc48 subfamily) RN87_RS03475 PF02861 Clp amino terminal domain, pathogenicity island component RN87_RS03475 PF10431 C-terminal, D2-small domain, of ClpB protein RN87_RS03475 PF17871 AAA lid domain RN87_RS03485 PF01121 Dephospho-CoA kinase RN87_RS03490 PF16325 Peptidase family U32 C-terminal domain RN87_RS03490 PF01136 Peptidase family U32 RN87_RS03495 PF04608 Phosphatidylglycerophosphatase A RN87_RS03500 PF00994 Probable molybdopterin binding domain RN87_RS03500 PF18146 Damage-inducible protein CinA KH domain RN87_RS03500 PF02464 Competence-damaged protein RN87_RS03505 PF07883 Cupin domain RN87_RS03510 PF13684 Dihydroxyacetone kinase family RN87_RS03510 PF02734 DAK2 domain RN87_RS03515 PF05524 PEP-utilising enzyme, N-terminal RN87_RS03515 PF02896 PEP-utilising enzyme, TIM barrel domain RN87_RS03515 PF00381 PTS HPr component phosphorylation site RN87_RS03515 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RN87_RS03515 PF00391 PEP-utilising enzyme, mobile domain RN87_RS03520 PF03600 Citrate transporter RN87_RS03525 PF03600 Citrate transporter RN87_RS03530 PF02237 Biotin protein ligase C terminal domain RN87_RS03530 PF03099 Biotin/lipoate A/B protein ligase family RN87_RS03530 PF08279 HTH domain RN87_RS03540 PF08241 Methyltransferase domain RN87_RS03600 PF04055 Radical SAM superfamily RN87_RS03615 PF00004 ATPase family associated with various cellular activities (AAA) RN87_RS03615 PF17862 AAA+ lid domain RN87_RS03615 PF06480 FtsH Extracellular RN87_RS03615 PF01434 Peptidase family M41 RN87_RS03630 PF00350 Dynamin family RN87_RS03655 PF01926 50S ribosome-binding GTPase RN87_RS03655 PF09269 Domain of unknown function (DUF1967) RN87_RS03655 PF01018 GTP1/OBG RN87_RS03680 PF01966 HD domain RN87_RS03680 PF12072 Domain of unknown function (DUF3552) RN87_RS03680 PF00013 KH domain RN87_RS03690 PF07244 Surface antigen variable number repeat RN87_RS03690 PF01103 Surface antigen RN87_RS03700 PF14602 Hexapeptide repeat of succinyl-transferase RN87_RS03700 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RN87_RS03700 PF00132 Bacterial transferase hexapeptide (six repeats) RN87_RS03705 PF03009 Glycerophosphoryl diester phosphodiesterase family RN87_RS03715 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system RN87_RS03725 PF01416 tRNA pseudouridine synthase RN87_RS03780 PF01195 Peptidyl-tRNA hydrolase RN87_RS03785 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RN87_RS03785 PF13237 4Fe-4S dicluster domain RN87_RS03785 PF10531 SLBB domain RN87_RS03785 PF13375 RnfC Barrel sandwich hybrid domain RN87_RS03790 PF03116 NQR2, RnfD, RnfE family RN87_RS03795 PF04205 FMN-binding domain RN87_RS03800 PF02508 Rnf-Nqr subunit, membrane protein RN87_RS03805 PF02508 Rnf-Nqr subunit, membrane protein RN87_RS03810 PF04060 Putative Fe-S cluster RN87_RS03810 PF13187 4Fe-4S dicluster domain RN87_RS03810 PF00037 4Fe-4S binding domain RN87_RS03820 PF01797 Transposase IS200 like RN87_RS03830 PF01726 LexA DNA binding domain RN87_RS03830 PF00717 Peptidase S24-like RN87_RS03855 PF00691 OmpA family RN87_RS03860 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RN87_RS03860 PF13378 Enolase C-terminal domain-like RN87_RS03885 PF01713 Smr domain RN87_RS03885 PF00488 MutS domain V RN87_RS03890 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RN87_RS03895 PF01406 tRNA synthetases class I (C) catalytic domain RN87_RS03895 PF09190 DALR domain RN87_RS03900 PF00636 Ribonuclease III domain RN87_RS03910 PF09115 DNA polymerase III, delta subunit, C terminal RN87_RS03915 PF01541 GIY-YIG catalytic domain RN87_RS03980 PF18152 DAHP synthase ferredoxin-like domain RN87_RS03980 PF00793 DAHP synthetase I family RN87_RS03985 PF02578 Multi-copper polyphenol oxidoreductase laccase RN87_RS03995 PF03471 Transporter associated domain RN87_RS03995 PF02080 TrkA-C domain RN87_RS03995 PF00999 Sodium/hydrogen exchanger family RN87_RS04000 PF00465 Iron-containing alcohol dehydrogenase RN87_RS04015 PF00899 ThiF family RN87_RS04025 PF17760 UvrA interaction domain RN87_RS04025 PF17755 UvrA DNA-binding domain RN87_RS04030 PF00164 Ribosomal protein S12/S23 RN87_RS04035 PF00177 Ribosomal protein S7p/S5e RN87_RS04040 PF00679 Elongation factor G C-terminus RN87_RS04040 PF00009 Elongation factor Tu GTP binding domain RN87_RS04040 PF03144 Elongation factor Tu domain 2 RN87_RS04040 PF14492 Elongation Factor G, domain II RN87_RS04040 PF03764 Elongation factor G, domain IV RN87_RS04045 PF03144 Elongation factor Tu domain 2 RN87_RS04045 PF03143 Elongation factor Tu C-terminal domain RN87_RS04045 PF00009 Elongation factor Tu GTP binding domain RN87_RS04085 PF01145 SPFH domain / Band 7 family RN87_RS04095 PF00367 phosphotransferase system, EIIB RN87_RS04095 PF02378 Phosphotransferase system, EIIC RN87_RS04100 PF00679 Elongation factor G C-terminus RN87_RS04100 PF14492 Elongation Factor G, domain II RN87_RS04100 PF03764 Elongation factor G, domain IV RN87_RS04100 PF00009 Elongation factor Tu GTP binding domain RN87_RS04100 PF03144 Elongation factor Tu domain 2 RN87_RS04110 PF00005 ABC transporter RN87_RS04110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN87_RS04115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN87_RS04115 PF00005 ABC transporter RN87_RS04120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN87_RS04125 PF12911 N-terminal TM domain of oligopeptide transport permease C RN87_RS04125 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS04130 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS04150 PF00176 SNF2 family N-terminal domain RN87_RS04150 PF00271 Helicase conserved C-terminal domain RN87_RS04150 PF12419 SNF2 Helicase protein RN87_RS04155 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RN87_RS04160 PF08032 RNA 2'-O ribose methyltransferase substrate binding RN87_RS04160 PF00588 SpoU rRNA Methylase family RN87_RS04165 PF08281 Sigma-70, region 4 RN87_RS04165 PF04542 Sigma-70 region 2 RN87_RS04170 PF13603 Leucyl-tRNA synthetase, Domain 2 RN87_RS04170 PF09334 tRNA synthetases class I (M) RN87_RS04170 PF08264 Anticodon-binding domain of tRNA RN87_RS04170 PF00133 tRNA synthetases class I (I, L, M and V) RN87_RS04190 PF04204 Homoserine O-succinyltransferase RN87_RS04195 PF06426 Serine acetyltransferase, N-terminal RN87_RS04195 PF00132 Bacterial transferase hexapeptide (six repeats) RN87_RS04200 PF00291 Pyridoxal-phosphate dependent enzyme RN87_RS04210 PF00925 GTP cyclohydrolase II RN87_RS04210 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RN87_RS04215 PF00677 Lumazine binding domain RN87_RS04220 PF01872 RibD C-terminal domain RN87_RS04220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RN87_RS04225 PF00885 6,7-dimethyl-8-ribityllumazine synthase RN87_RS04230 PF00892 EamA-like transporter family RN87_RS04245 PF11967 Recombination protein O N terminal RN87_RS04245 PF02565 Recombination protein O C terminal RN87_RS04250 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RN87_RS04250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RN87_RS04255 PF03477 ATP cone domain RN87_RS04260 PF00551 Formyl transferase RN87_RS04260 PF02911 Formyl transferase, C-terminal domain RN87_RS04265 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RN87_RS04265 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RN87_RS04270 PF13291 ACT domain RN87_RS04275 PF00571 CBS domain RN87_RS04275 PF03471 Transporter associated domain RN87_RS04275 PF01595 Cyclin M transmembrane N-terminal domain RN87_RS04290 PF00156 Phosphoribosyl transferase domain RN87_RS04295 PF13291 ACT domain RN87_RS04295 PF04607 Region found in RelA / SpoT proteins RN87_RS04295 PF02824 TGS domain RN87_RS04300 PF01702 Queuine tRNA-ribosyltransferase RN87_RS04305 PF03448 MgtE intracellular N domain RN87_RS04305 PF01769 Divalent cation transporter RN87_RS04305 PF00571 CBS domain RN87_RS04325 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase RN87_RS04330 PF00701 Dihydrodipicolinate synthetase family RN87_RS04335 PF00480 ROK family RN87_RS04340 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RN87_RS04340 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RN87_RS04345 PF03480 Bacterial extracellular solute-binding protein, family 7 RN87_RS04350 PF00356 Bacterial regulatory proteins, lacI family RN87_RS04355 PF01344 Kelch motif RN87_RS04360 PF02384 N-6 DNA Methylase RN87_RS04360 PF12161 HsdM N-terminal domain RN87_RS04365 PF00270 DEAD/DEAH box helicase RN87_RS04365 PF17191 RecG wedge domain RN87_RS04365 PF13749 Putative ATP-dependent DNA helicase recG C-terminal RN87_RS04370 PF01420 Type I restriction modification DNA specificity domain RN87_RS04375 PF01420 Type I restriction modification DNA specificity domain RN87_RS04400 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RN87_RS04400 PF12008 Type I restriction and modification enzyme - subunit R C terminal RN87_RS04400 PF18766 SWI2/SNF2 ATPase RN87_RS04415 PF01145 SPFH domain / Band 7 family RN87_RS04450 PF13411 MerR HTH family regulatory protein RN87_RS04455 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RN87_RS04455 PF02779 Transketolase, pyrimidine binding domain RN87_RS04455 PF02780 Transketolase, C-terminal domain RN87_RS04460 PF00248 Aldo/keto reductase family RN87_RS04475 PF01680 SOR/SNZ family RN87_RS04480 PF00392 Bacterial regulatory proteins, gntR family RN87_RS04480 PF00155 Aminotransferase class I and II RN87_RS04485 PF01225 Mur ligase family, catalytic domain RN87_RS04485 PF02875 Mur ligase family, glutamate ligase domain RN87_RS04485 PF08245 Mur ligase middle domain RN87_RS04490 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RN87_RS04490 PF00953 Glycosyl transferase family 4 RN87_RS04495 PF08245 Mur ligase middle domain RN87_RS04500 PF04101 Glycosyltransferase family 28 C-terminal domain RN87_RS04500 PF03033 Glycosyltransferase family 28 N-terminal domain RN87_RS04505 PF08245 Mur ligase middle domain RN87_RS04505 PF02875 Mur ligase family, glutamate ligase domain RN87_RS04505 PF01225 Mur ligase family, catalytic domain RN87_RS04510 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RN87_RS04510 PF01565 FAD binding domain RN87_RS04515 PF07478 D-ala D-ala ligase C-terminus RN87_RS04515 PF01820 D-ala D-ala ligase N-terminus RN87_RS04530 PF12327 FtsZ family, C-terminal domain RN87_RS04530 PF00091 Tubulin/FtsZ family, GTPase domain RN87_RS04535 PF06826 Predicted Permease Membrane Region RN87_RS04535 PF02080 TrkA-C domain RN87_RS04575 PF00117 Glutamine amidotransferase class-I RN87_RS04575 PF00958 GMP synthase C terminal domain RN87_RS04575 PF02540 NAD synthase RN87_RS04580 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RN87_RS04580 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RN87_RS04585 PF00294 pfkB family carbohydrate kinase RN87_RS04590 PF00455 DeoR C terminal sensor domain RN87_RS04590 PF08220 DeoR-like helix-turn-helix domain RN87_RS04595 PF00830 Ribosomal L28 family RN87_RS04600 PF00005 ABC transporter RN87_RS04600 PF00664 ABC transporter transmembrane region RN87_RS04605 PF00005 ABC transporter RN87_RS04605 PF00664 ABC transporter transmembrane region RN87_RS04620 PF00106 short chain dehydrogenase RN87_RS04625 PF13458 Periplasmic binding protein RN87_RS04630 PF02653 Branched-chain amino acid transport system / permease component RN87_RS04635 PF02653 Branched-chain amino acid transport system / permease component RN87_RS04635 PF11862 Domain of unknown function (DUF3382) RN87_RS04640 PF12399 Branched-chain amino acid ATP-binding cassette transporter RN87_RS04640 PF00005 ABC transporter RN87_RS04645 PF00005 ABC transporter RN87_RS04650 PF02567 Phenazine biosynthesis-like protein RN87_RS04655 PF03797 Autotransporter beta-domain RN87_RS04655 PF12951 Passenger-associated-transport-repeat RN87_RS04655 PF00082 Subtilase family RN87_RS04660 PF03797 Autotransporter beta-domain RN87_RS04660 PF12951 Passenger-associated-transport-repeat RN87_RS04660 PF00082 Subtilase family RN87_RS04665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RN87_RS04665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RN87_RS04665 PF02770 Acyl-CoA dehydrogenase, middle domain RN87_RS04670 PF00753 Metallo-beta-lactamase superfamily RN87_RS04670 PF00258 Flavodoxin RN87_RS04675 PF03553 Na+/H+ antiporter family RN87_RS04680 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RN87_RS04680 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RN87_RS04680 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RN87_RS04680 PF10371 Domain of unknown function RN87_RS04680 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RN87_RS04690 PF01053 Cys/Met metabolism PLP-dependent enzyme RN87_RS04695 PF00392 Bacterial regulatory proteins, gntR family RN87_RS04695 PF00155 Aminotransferase class I and II RN87_RS04700 PF13291 ACT domain RN87_RS04700 PF00291 Pyridoxal-phosphate dependent enzyme RN87_RS04705 PF01235 Sodium:alanine symporter family RN87_RS04710 PF04960 Glutaminase RN87_RS04720 PF04297 Putative helix-turn-helix protein, YlxM / p13 like RN87_RS04725 PF00448 SRP54-type protein, GTPase domain RN87_RS04725 PF02881 SRP54-type protein, helical bundle domain RN87_RS04725 PF02978 Signal peptide binding domain RN87_RS04730 PF00886 Ribosomal protein S16 RN87_RS04765 PF12706 Beta-lactamase superfamily domain RN87_RS04770 PF00176 SNF2 family N-terminal domain RN87_RS04770 PF12419 SNF2 Helicase protein RN87_RS04770 PF00271 Helicase conserved C-terminal domain RN87_RS04780 PF07733 Bacterial DNA polymerase III alpha NTPase domain RN87_RS04780 PF14579 Helix-hairpin-helix motif RN87_RS04780 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RN87_RS04780 PF01336 OB-fold nucleic acid binding domain RN87_RS04780 PF02811 PHP domain RN87_RS04820 PF07728 AAA domain (dynein-related subfamily) RN87_RS04830 PF05762 VWA domain containing CoxE-like protein RN87_RS04835 PF03390 2-hydroxycarboxylate transporter family RN87_RS04840 PF00682 HMGL-like RN87_RS04840 PF02436 Conserved carboxylase domain RN87_RS04840 PF00364 Biotin-requiring enzyme RN87_RS04850 PF04223 Citrate lyase, alpha subunit (CitF) RN87_RS04855 PF03328 HpcH/HpaI aldolase/citrate lyase family RN87_RS04860 PF06857 Malonate decarboxylase delta subunit (MdcD) RN87_RS04865 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase RN87_RS04870 PF02436 Conserved carboxylase domain RN87_RS04870 PF00682 HMGL-like RN87_RS04870 PF00364 Biotin-requiring enzyme RN87_RS04875 PF03390 2-hydroxycarboxylate transporter family RN87_RS04885 PF04073 Aminoacyl-tRNA editing domain RN87_RS04890 PF01479 S4 domain RN87_RS04890 PF00849 RNA pseudouridylate synthase RN87_RS04895 PF01351 Ribonuclease HII RN87_RS04900 PF02021 Uncharacterised protein family UPF0102 RN87_RS04920 PF00121 Triosephosphate isomerase RN87_RS04925 PF01926 50S ribosome-binding GTPase RN87_RS04925 PF06071 Protein of unknown function (DUF933) RN87_RS04930 PF01783 Ribosomal L32p protein family RN87_RS04940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN87_RS04940 PF00005 ABC transporter RN87_RS04945 PF00005 ABC transporter RN87_RS04945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN87_RS04950 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS04950 PF12911 N-terminal TM domain of oligopeptide transport permease C RN87_RS04955 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS04960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN87_RS04970 PF03466 LysR substrate binding domain RN87_RS04970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RN87_RS04980 PF02515 CoA-transferase family III RN87_RS04985 PF00682 HMGL-like RN87_RS04995 PF12704 MacB-like periplasmic core domain RN87_RS04995 PF02687 FtsX-like permease family RN87_RS05000 PF12704 MacB-like periplasmic core domain RN87_RS05000 PF00005 ABC transporter RN87_RS05000 PF02687 FtsX-like permease family RN87_RS05005 PF00005 ABC transporter RN87_RS05025 PF00005 ABC transporter RN87_RS05050 PF01026 TatD related DNase RN87_RS05055 PF01648 4'-phosphopantetheinyl transferase superfamily RN87_RS05060 PF03462 PCRF domain RN87_RS05060 PF00472 RF-1 domain RN87_RS05080 PF00749 tRNA synthetases class I (E and Q), catalytic domain RN87_RS05085 PF00579 tRNA synthetases class I (W and Y) RN87_RS05095 PF00842 Alanine racemase, C-terminal domain RN87_RS05095 PF01168 Alanine racemase, N-terminal domain RN87_RS05105 PF01039 Carboxyl transferase domain RN87_RS05110 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RN87_RS05115 PF00365 Phosphofructokinase RN87_RS05120 PF04363 Protein of unknown function (DUF496) RN87_RS05125 PF13662 Toprim domain RN87_RS05125 PF02132 RecR protein RN87_RS05135 PF03358 NADPH-dependent FMN reductase RN87_RS05140 PF00156 Phosphoribosyl transferase domain RN87_RS05145 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RN87_RS05145 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RN87_RS05150 PF01979 Amidohydrolase family RN87_RS05155 PF00117 Glutamine amidotransferase class-I RN87_RS05155 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RN87_RS05160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RN87_RS05160 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RN87_RS05160 PF02142 MGS-like domain RN87_RS05165 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B RN87_RS05165 PF00175 Oxidoreductase NAD-binding domain RN87_RS05170 PF01180 Dihydroorotate dehydrogenase RN87_RS05180 PF12323 Helix-turn-helix domain RN87_RS05180 PF07282 Putative transposase DNA-binding domain RN87_RS05180 PF01385 Probable transposase RN87_RS05195 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RN87_RS05205 PF00156 Phosphoribosyl transferase domain RN87_RS05210 PF02811 PHP domain RN87_RS05220 PF01245 Ribosomal protein L19 RN87_RS05225 PF01177 Asp/Glu/Hydantoin racemase RN87_RS05245 PF01520 N-acetylmuramoyl-L-alanine amidase RN87_RS05245 PF11741 AMIN domain RN87_RS05250 PF01048 Phosphorylase superfamily RN87_RS05260 PF02626 Carboxyltransferase domain, subdomain A and B RN87_RS05265 PF02682 Carboxyltransferase domain, subdomain C and D RN87_RS05270 PF01566 Natural resistance-associated macrophage protein RN87_RS05275 PF03746 LamB/YcsF family RN87_RS05295 PF01380 SIS domain RN87_RS05300 PF01321 Creatinase/Prolidase N-terminal domain RN87_RS05300 PF00557 Metallopeptidase family M24 RN87_RS05310 PF00171 Aldehyde dehydrogenase family RN87_RS05315 PF02915 Rubrerythrin RN87_RS05340 PF00490 Delta-aminolevulinic acid dehydratase RN87_RS05345 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RN87_RS05345 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus RN87_RS05350 PF08676 MutL C terminal dimerisation domain RN87_RS05350 PF01119 DNA mismatch repair protein, C-terminal domain RN87_RS05355 PF02590 Predicted SPOUT methyltransferase RN87_RS05370 PF00152 tRNA synthetases class II (D, K and N) RN87_RS05370 PF01336 OB-fold nucleic acid binding domain RN87_RS05375 PF03788 LrgA family RN87_RS05380 PF04172 LrgB-like family RN87_RS05385 PF03932 CutC family RN87_RS05390 PF03806 AbgT putative transporter family RN87_RS05400 PF00258 Flavodoxin RN87_RS05405 PF00919 Uncharacterized protein family UPF0004 RN87_RS05405 PF01938 TRAM domain RN87_RS05405 PF04055 Radical SAM superfamily RN87_RS05410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RN87_RS05410 PF07497 Rho termination factor, RNA-binding domain RN87_RS05415 PF01551 Peptidase family M23 RN87_RS05415 PF04225 Opacity-associated protein A LysM-like domain RN87_RS05420 PF04551 GcpE protein RN87_RS05440 PF01197 Ribosomal protein L31 RN87_RS05455 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RN87_RS05455 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RN87_RS05460 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RN87_RS05460 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RN87_RS05465 PF01790 Prolipoprotein diacylglyceryl transferase RN87_RS05475 PF01168 Alanine racemase, N-terminal domain RN87_RS05475 PF00842 Alanine racemase, C-terminal domain RN87_RS05495 PF00108 Thiolase, N-terminal domain RN87_RS05495 PF02803 Thiolase, C-terminal domain RN87_RS05505 PF07715 TonB-dependent Receptor Plug Domain RN87_RS05505 PF00593 TonB dependent receptor RN87_RS05510 PF03537 Glycoside-hydrolase family GH114 RN87_RS05520 PF13333 Integrase core domain RN87_RS05520 PF00665 Integrase core domain RN87_RS05520 PF13276 HTH-like domain RN87_RS05525 PF01212 Beta-eliminating lyase RN87_RS05530 PF01276 Orn/Lys/Arg decarboxylase, major domain RN87_RS05530 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RN87_RS05535 PF13580 SIS domain RN87_RS05540 PF03466 LysR substrate binding domain RN87_RS05540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RN87_RS05545 PF13520 Amino acid permease RN87_RS05550 PF07722 Peptidase C26 RN87_RS05555 PF00750 tRNA synthetases class I (R) RN87_RS05555 PF05746 DALR anticodon binding domain RN87_RS05555 PF03485 Arginyl tRNA synthetase N terminal domain RN87_RS05560 PF01734 Patatin-like phospholipase RN87_RS05565 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RN87_RS05565 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RN87_RS05570 PF00753 Metallo-beta-lactamase superfamily RN87_RS05570 PF00258 Flavodoxin RN87_RS05575 PF00258 Flavodoxin RN87_RS05595 PF02677 Epoxyqueuosine reductase QueH RN87_RS05600 PF02463 RecF/RecN/SMC N terminal domain RN87_RS05610 PF13361 UvrD-like helicase C-terminal domain RN87_RS05610 PF00580 UvrD/REP helicase N-terminal domain RN87_RS05615 PF00905 Penicillin binding protein transpeptidase domain RN87_RS05615 PF00912 Transglycosylase RN87_RS05620 PF04055 Radical SAM superfamily RN87_RS05625 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RN87_RS05625 PF02272 DHHA1 domain RN87_RS05625 PF01411 tRNA synthetases class II (A) RN87_RS05630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RN87_RS05630 PF07992 Pyridine nucleotide-disulphide oxidoreductase RN87_RS05635 PF00313 'Cold-shock' DNA-binding domain RN87_RS05645 PF03601 Conserved hypothetical protein 698 RN87_RS05655 PF03641 Possible lysine decarboxylase RN87_RS05660 PF02768 DNA polymerase III beta subunit, C-terminal domain RN87_RS05660 PF00712 DNA polymerase III beta subunit, N-terminal domain RN87_RS05665 PF02660 Glycerol-3-phosphate acyltransferase RN87_RS05675 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RN87_RS05675 PF14824 Sirohaem biosynthesis protein central RN87_RS05675 PF10414 Sirohaem synthase dimerisation region RN87_RS05680 PF00202 Aminotransferase class-III RN87_RS05685 PF01522 Polysaccharide deacetylase RN87_RS05690 PF00535 Glycosyl transferase family 2 RN87_RS05700 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RN87_RS05710 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RN87_RS05715 PF00154 recA bacterial DNA recombination protein RN87_RS05720 PF02631 RecX family RN87_RS05725 PF00814 Glycoprotease family RN87_RS05730 PF18211 Csm1 subunit domain B RN87_RS05740 PF03787 RAMP superfamily RN87_RS05750 PF03787 RAMP superfamily RN87_RS05755 PF10040 CRISPR-associated endoribonuclease Cas6 RN87_RS05765 PF01867 CRISPR associated protein Cas1 RN87_RS05790 PF01546 Peptidase family M20/M25/M40 RN87_RS05790 PF07687 Peptidase dimerisation domain RN87_RS05820 PF05818 Enterobacterial TraT complement resistance protein RN87_RS05825 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RN87_RS05825 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RN87_RS05825 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RN87_RS05825 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RN87_RS05830 PF04055 Radical SAM superfamily RN87_RS05830 PF06969 HemN C-terminal domain RN87_RS05835 PF01168 Alanine racemase, N-terminal domain RN87_RS05840 PF04472 Cell division protein SepF RN87_RS05855 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system RN87_RS05860 PF02481 DNA recombination-mediator protein A RN87_RS05860 PF17782 DprA winged helix domain RN87_RS05865 PF00092 von Willebrand factor type A domain RN87_RS05875 PF09382 RQC domain RN87_RS05875 PF16124 RecQ zinc-binding RN87_RS05875 PF00270 DEAD/DEAH box helicase RN87_RS05875 PF00570 HRDC domain RN87_RS05875 PF00271 Helicase conserved C-terminal domain RN87_RS05895 PF06832 Penicillin-Binding Protein C-terminus Family RN87_RS05895 PF00905 Penicillin binding protein transpeptidase domain RN87_RS05895 PF00912 Transglycosylase RN87_RS05900 PF12704 MacB-like periplasmic core domain RN87_RS05900 PF02687 FtsX-like permease family RN87_RS05905 PF00005 ABC transporter RN87_RS05910 PF00072 Response regulator receiver domain RN87_RS05910 PF00486 Transcriptional regulatory protein, C terminal RN87_RS05915 PF00672 HAMP domain RN87_RS05915 PF00512 His Kinase A (phospho-acceptor) domain RN87_RS05915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN87_RS05925 PF13460 NAD(P)H-binding RN87_RS05930 PF01638 HxlR-like helix-turn-helix RN87_RS05935 PF07687 Peptidase dimerisation domain RN87_RS05935 PF01546 Peptidase family M20/M25/M40 RN87_RS05940 PF03806 AbgT putative transporter family RN87_RS05945 PF00474 Sodium:solute symporter family RN87_RS05955 PF10114 Sensory domain found in PocR RN87_RS05955 PF12833 Helix-turn-helix domain RN87_RS05965 PF00580 UvrD/REP helicase N-terminal domain RN87_RS05965 PF13361 UvrD-like helicase C-terminal domain RN87_RS05970 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RN87_RS05975 PF07977 FabA-like domain RN87_RS05980 PF00132 Bacterial transferase hexapeptide (six repeats) RN87_RS05980 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RN87_RS05990 PF02684 Lipid-A-disaccharide synthetase RN87_RS05995 PF00005 ABC transporter RN87_RS05995 PF00664 ABC transporter transmembrane region RN87_RS06035 PF01966 HD domain RN87_RS06045 PF00575 S1 RNA binding domain RN87_RS06045 PF17876 Cold shock domain RN87_RS06045 PF00773 RNB domain RN87_RS06045 PF08206 Ribonuclease B OB domain RN87_RS06050 PF01668 SmpB protein RN87_RS06060 PF02824 TGS domain RN87_RS06060 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RN87_RS06060 PF03129 Anticodon binding domain RN87_RS06060 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RN87_RS06075 PF00753 Metallo-beta-lactamase superfamily RN87_RS06075 PF00258 Flavodoxin RN87_RS06080 PF08021 Siderophore-interacting FAD-binding domain RN87_RS06080 PF00005 ABC transporter RN87_RS06080 PF04954 Siderophore-interacting protein RN87_RS06080 PF00664 ABC transporter transmembrane region RN87_RS06085 PF00664 ABC transporter transmembrane region RN87_RS06085 PF00005 ABC transporter RN87_RS06090 PF03180 NLPA lipoprotein RN87_RS06095 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS06100 PF00005 ABC transporter RN87_RS06100 PF09383 NIL domain RN87_RS06110 PF00491 Arginase family RN87_RS06120 PF03060 Nitronate monooxygenase RN87_RS06130 PF01554 MatE RN87_RS06135 PF04552 Sigma-54, DNA binding domain RN87_RS06135 PF04963 Sigma-54 factor, core binding domain RN87_RS06135 PF00309 Sigma-54 factor, Activator interacting domain (AID) RN87_RS06140 PF00158 Sigma-54 interaction domain RN87_RS06140 PF13188 PAS domain RN87_RS06140 PF02954 Bacterial regulatory protein, Fis family RN87_RS06145 PF00291 Pyridoxal-phosphate dependent enzyme RN87_RS06150 PF01546 Peptidase family M20/M25/M40 RN87_RS06150 PF07687 Peptidase dimerisation domain RN87_RS06155 PF00474 Sodium:solute symporter family RN87_RS06160 PF07969 Amidohydrolase family RN87_RS06165 PF01297 Zinc-uptake complex component A periplasmic RN87_RS06170 PF00005 ABC transporter RN87_RS06175 PF00950 ABC 3 transport family RN87_RS06180 PF00950 ABC 3 transport family RN87_RS06190 PF12161 HsdM N-terminal domain RN87_RS06190 PF02384 N-6 DNA Methylase RN87_RS06205 PF02661 Fic/DOC family RN87_RS06205 PF12728 Helix-turn-helix domain RN87_RS06210 PF02899 Phage integrase, N-terminal SAM-like domain RN87_RS06210 PF00589 Phage integrase family RN87_RS06220 PF01022 Bacterial regulatory protein, arsR family RN87_RS06225 PF03773 Predicted permease RN87_RS06240 PF13635 Domain of unknown function (DUF4143) RN87_RS06240 PF13173 AAA domain RN87_RS06245 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RN87_RS06250 PF04073 Aminoacyl-tRNA editing domain RN87_RS06255 PF09383 NIL domain RN87_RS06255 PF00005 ABC transporter RN87_RS06260 PF02653 Branched-chain amino acid transport system / permease component RN87_RS06270 PF00118 TCP-1/cpn60 chaperonin family RN87_RS06275 PF00166 Chaperonin 10 Kd subunit RN87_RS06290 PF10905 Protein of unknown function (DUF2695) RN87_RS06295 PF00069 Protein kinase domain RN87_RS06295 PF03793 PASTA domain RN87_RS06300 PF03193 RsgA GTPase RN87_RS06300 PF16745 RsgA N-terminal domain RN87_RS06305 PF00834 Ribulose-phosphate 3 epimerase family RN87_RS06315 PF05670 NFACT protein RNA binding domain RN87_RS06325 PF03063 Prismane/CO dehydrogenase family RN87_RS06330 PF00474 Sodium:solute symporter family RN87_RS06365 PF01207 Dihydrouridine synthase (Dus) RN87_RS06370 PF00488 MutS domain V RN87_RS06370 PF05190 MutS family domain IV RN87_RS06370 PF01624 MutS domain I RN87_RS06370 PF05188 MutS domain II RN87_RS06370 PF05192 MutS domain III RN87_RS06380 PF12399 Branched-chain amino acid ATP-binding cassette transporter RN87_RS06380 PF00005 ABC transporter RN87_RS06385 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RN87_RS06385 PF01411 tRNA synthetases class II (A) RN87_RS06385 PF02272 DHHA1 domain RN87_RS06390 PF03652 Holliday junction resolvase RN87_RS06395 PF07549 SecD/SecF GG Motif RN87_RS06395 PF02355 Protein export membrane protein RN87_RS06400 PF07549 SecD/SecF GG Motif RN87_RS06400 PF02355 Protein export membrane protein RN87_RS06405 PF13847 Methyltransferase domain RN87_RS06405 PF10119 Predicted methyltransferase regulatory domain RN87_RS06410 PF07687 Peptidase dimerisation domain RN87_RS06410 PF01546 Peptidase family M20/M25/M40 RN87_RS06420 PF01367 5'-3' exonuclease, C-terminal SAM fold RN87_RS06420 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RN87_RS06420 PF00476 DNA polymerase family A RN87_RS06425 PF10298 WhiA N-terminal LAGLIDADG-like domain RN87_RS06425 PF02650 WhiA C-terminal HTH domain RN87_RS06425 PF14527 WhiA LAGLIDADG-like domain RN87_RS06430 PF01687 Riboflavin kinase RN87_RS06430 PF06574 FAD synthetase RN87_RS06435 PF02616 Segregation and condensation protein ScpA RN87_RS06440 PF03023 Lipid II flippase MurJ RN87_RS06450 PF02441 Flavoprotein RN87_RS06450 PF04127 DNA / pantothenate metabolism flavoprotein RN87_RS06465 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RN87_RS06465 PF07992 Pyridine nucleotide-disulphide oxidoreductase RN87_RS06480 PF00849 RNA pseudouridylate synthase RN87_RS06480 PF01479 S4 domain RN87_RS06495 PF09285 Elongation factor P, C-terminal RN87_RS06495 PF01132 Elongation factor P (EF-P) OB domain RN87_RS06495 PF08207 Elongation factor P (EF-P) KOW-like domain RN87_RS06520 PF00258 Flavodoxin RN87_RS06525 PF00581 Rhodanese-like domain RN87_RS06525 PF00899 ThiF family RN87_RS06535 PF00300 Histidine phosphatase superfamily (branch 1) RN87_RS06545 PF05636 HIGH Nucleotidyl Transferase RN87_RS06565 PF01546 Peptidase family M20/M25/M40 RN87_RS06565 PF07687 Peptidase dimerisation domain RN87_RS06570 PF04055 Radical SAM superfamily RN87_RS06570 PF08497 Radical SAM N-terminal RN87_RS06585 PF01118 Semialdehyde dehydrogenase, NAD binding domain RN87_RS06585 PF02774 Semialdehyde dehydrogenase, dimerisation domain RN87_RS06590 PF00288 GHMP kinases N terminal domain RN87_RS06590 PF08544 GHMP kinases C terminal RN87_RS06595 PF14821 Threonine synthase N terminus RN87_RS06595 PF00291 Pyridoxal-phosphate dependent enzyme RN87_RS06600 PF00742 Homoserine dehydrogenase RN87_RS06600 PF01842 ACT domain RN87_RS06600 PF03447 Homoserine dehydrogenase, NAD binding domain RN87_RS06605 PF00696 Amino acid kinase family RN87_RS06605 PF13840 ACT domain RN87_RS06630 PF04961 Formiminotransferase-cyclodeaminase RN87_RS06640 PF01979 Amidohydrolase family RN87_RS06645 PF07837 Formiminotransferase domain, N-terminal subdomain RN87_RS06645 PF02971 Formiminotransferase domain RN87_RS06650 PF13276 HTH-like domain RN87_RS06650 PF00665 Integrase core domain RN87_RS06650 PF13333 Integrase core domain RN87_RS06665 PF01555 DNA methylase RN87_RS06675 PF04851 Type III restriction enzyme, res subunit RN87_RS06680 PF07308 Protein of unknown function (DUF1456) RN87_RS06685 PF13307 Helicase C-terminal domain RN87_RS06685 PF06733 DEAD_2 RN87_RS06690 PF07698 7TM receptor with intracellular HD hydrolase RN87_RS06690 PF01966 HD domain RN87_RS06690 PF07697 7TM-HD extracellular RN87_RS06695 PF02130 Uncharacterized protein family UPF0054 RN87_RS06700 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RN87_RS06700 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RN87_RS06700 PF13187 4Fe-4S dicluster domain RN87_RS06705 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B RN87_RS06705 PF00175 Oxidoreductase NAD-binding domain RN87_RS06710 PF17179 4Fe-4S dicluster domain RN87_RS06725 PF01264 Chorismate synthase RN87_RS06730 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RN87_RS06740 PF00293 NUDIX domain RN87_RS06745 PF01467 Cytidylyltransferase-like RN87_RS06745 PF00294 pfkB family carbohydrate kinase RN87_RS06750 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RN87_RS06755 PF00814 Glycoprotease family RN87_RS06785 PF13396 Phospholipase_D-nuclease N-terminal RN87_RS06785 PF13091 PLD-like domain RN87_RS06790 PF01636 Phosphotransferase enzyme family RN87_RS06800 PF01435 Peptidase family M48 RN87_RS06815 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RN87_RS06835 PF07685 CobB/CobQ-like glutamine amidotransferase domain RN87_RS06845 PF03186 CobD/Cbib protein RN87_RS06850 PF00155 Aminotransferase class I and II RN87_RS06855 PF07685 CobB/CobQ-like glutamine amidotransferase domain RN87_RS06860 PF12728 Helix-turn-helix domain RN87_RS06860 PF02661 Fic/DOC family RN87_RS06865 PF02570 Precorrin-8X methylmutase RN87_RS06900 PF01888 CbiD RN87_RS06910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RN87_RS06910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RN87_RS06915 PF05175 Methyltransferase small domain RN87_RS06920 PF13173 AAA domain RN87_RS06920 PF13635 Domain of unknown function (DUF4143) RN87_RS06935 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RN87_RS06945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RN87_RS06970 PF01890 Cobalamin synthesis G C-terminus RN87_RS06970 PF11760 Cobalamin synthesis G N-terminal RN87_RS06970 PF11761 Cobalamin biosynthesis central region RN87_RS06975 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RN87_RS06975 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RN87_RS06980 PF02571 Precorrin-6x reductase CbiJ/CobK RN87_RS06985 PF13087 AAA domain RN87_RS06985 PF13086 AAA domain RN87_RS06985 PF13195 Protein of unknown function (DUF4011) RN87_RS07010 PF00293 NUDIX domain RN87_RS07030 PF17763 Glutaminase/Asparaginase C-terminal domain RN87_RS07030 PF00710 Asparaginase, N-terminal RN87_RS07035 PF00561 alpha/beta hydrolase fold RN87_RS07040 PF02637 GatB domain RN87_RS07040 PF02934 GatB/GatE catalytic domain RN87_RS07045 PF01425 Amidase RN87_RS07050 PF02686 Glu-tRNAGln amidotransferase C subunit RN87_RS07055 PF00849 RNA pseudouridylate synthase RN87_RS07055 PF01479 S4 domain RN87_RS07060 PF04079 Segregation and condensation complex subunit ScpB RN87_RS07070 PF02545 Maf-like protein RN87_RS07080 PF03309 Type III pantothenate kinase RN87_RS07105 PF01741 Large-conductance mechanosensitive channel, MscL RN87_RS07110 PF01497 Periplasmic binding protein RN87_RS07115 PF00593 TonB dependent receptor RN87_RS07115 PF07715 TonB-dependent Receptor Plug Domain RN87_RS07120 PF01032 FecCD transport family RN87_RS07125 PF00005 ABC transporter RN87_RS07130 PF04055 Radical SAM superfamily RN87_RS07145 PF02127 Aminopeptidase I zinc metalloprotease (M18) RN87_RS07150 PF03590 Aspartate-ammonia ligase RN87_RS07160 PF06421 GTP-binding protein LepA C-terminus RN87_RS07160 PF03144 Elongation factor Tu domain 2 RN87_RS07160 PF00009 Elongation factor Tu GTP binding domain RN87_RS07160 PF00679 Elongation factor G C-terminus RN87_RS07170 PF02492 CobW/HypB/UreG, nucleotide-binding domain RN87_RS07170 PF07683 Cobalamin synthesis protein cobW C-terminal domain RN87_RS07190 PF02770 Acyl-CoA dehydrogenase, middle domain RN87_RS07190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RN87_RS07190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RN87_RS07195 PF01012 Electron transfer flavoprotein domain RN87_RS07200 PF01012 Electron transfer flavoprotein domain RN87_RS07200 PF00766 Electron transfer flavoprotein FAD-binding domain RN87_RS07210 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RN87_RS07210 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RN87_RS07215 PF00480 ROK family RN87_RS07220 PF00221 Aromatic amino acid lyase RN87_RS07225 PF17392 Urocanase C-terminal domain RN87_RS07225 PF01175 Urocanase Rossmann-like domain RN87_RS07225 PF17391 Urocanase N-terminal domain RN87_RS07230 PF03616 Sodium/glutamate symporter RN87_RS07245 PF00571 CBS domain RN87_RS07245 PF08279 HTH domain RN87_RS07250 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RN87_RS07250 PF02896 PEP-utilising enzyme, TIM barrel domain RN87_RS07250 PF00391 PEP-utilising enzyme, mobile domain RN87_RS07255 PF06874 Firmicute fructose-1,6-bisphosphatase RN87_RS07260 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RN87_RS07260 PF00128 Alpha amylase, catalytic domain RN87_RS07265 PF00497 Bacterial extracellular solute-binding proteins, family 3 RN87_RS07270 PF00005 ABC transporter RN87_RS07275 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS07280 PF08534 Redoxin RN87_RS07280 PF01641 SelR domain RN87_RS07280 PF01625 Peptide methionine sulfoxide reductase RN87_RS07285 PF02683 Cytochrome C biogenesis protein transmembrane region RN87_RS07295 PF08486 Stage II sporulation protein RN87_RS07300 PF02348 Cytidylyltransferase RN87_RS07305 PF00300 Histidine phosphatase superfamily (branch 1) RN87_RS07310 PF00588 SpoU rRNA Methylase family RN87_RS07315 PF01212 Beta-eliminating lyase RN87_RS07330 PF00216 Bacterial DNA-binding protein RN87_RS07345 PF07992 Pyridine nucleotide-disulphide oxidoreductase RN87_RS07345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RN87_RS07355 PF01202 Shikimate kinase RN87_RS07360 PF13167 GTP-binding GTPase N-terminal RN87_RS07360 PF01926 50S ribosome-binding GTPase RN87_RS07360 PF16360 GTP-binding GTPase Middle Region RN87_RS07375 PF13533 Biotin-lipoyl like RN87_RS07380 PF00005 ABC transporter RN87_RS07385 PF12704 MacB-like periplasmic core domain RN87_RS07385 PF02687 FtsX-like permease family RN87_RS07485 PF00589 Phage integrase family RN87_RS07485 PF02899 Phage integrase, N-terminal SAM-like domain RN87_RS07510 PF00155 Aminotransferase class I and II RN87_RS07520 PF08241 Methyltransferase domain RN87_RS07535 PF00534 Glycosyl transferases group 1 RN87_RS07535 PF08323 Starch synthase catalytic domain RN87_RS07540 PF00483 Nucleotidyl transferase RN87_RS07545 PF00483 Nucleotidyl transferase RN87_RS07545 PF00132 Bacterial transferase hexapeptide (six repeats) RN87_RS07550 PF02806 Alpha amylase, C-terminal all-beta domain RN87_RS07550 PF00128 Alpha amylase, catalytic domain RN87_RS07550 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RN87_RS07555 PF00343 Carbohydrate phosphorylase RN87_RS07560 PF02446 4-alpha-glucanotransferase RN87_RS07570 PF01027 Inhibitor of apoptosis-promoting Bax1 RN87_RS07575 PF13193 AMP-binding enzyme C-terminal domain RN87_RS07575 PF00501 AMP-binding enzyme RN87_RS07580 PF01171 PP-loop family RN87_RS07590 PF12368 Rhodanase C-terminal RN87_RS07590 PF17773 UPF0176 acylphosphatase like domain RN87_RS07590 PF00581 Rhodanese-like domain RN87_RS07600 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RN87_RS07610 PF01343 Peptidase family S49 RN87_RS07615 PF00293 NUDIX domain RN87_RS07620 PF08032 RNA 2'-O ribose methyltransferase substrate binding RN87_RS07620 PF00588 SpoU rRNA Methylase family RN87_RS07625 PF00005 ABC transporter RN87_RS07630 PF01032 FecCD transport family RN87_RS07640 PF00593 TonB dependent receptor RN87_RS07640 PF07715 TonB-dependent Receptor Plug Domain RN87_RS07645 PF08439 Oligopeptidase F RN87_RS07645 PF01432 Peptidase family M3 RN87_RS07650 PF02664 S-Ribosylhomocysteinase (LuxS) RN87_RS07655 PF00860 Permease family RN87_RS07710 PF04237 YjbR RN87_RS07725 PF00106 short chain dehydrogenase RN87_RS07730 PF00753 Metallo-beta-lactamase superfamily RN87_RS07740 PF01812 5-formyltetrahydrofolate cyclo-ligase family RN87_RS07745 PF00571 CBS domain RN87_RS07745 PF01380 SIS domain RN87_RS07765 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RN87_RS07765 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RN87_RS07770 PF13847 Methyltransferase domain RN87_RS07770 PF17827 PrmC N-terminal domain RN87_RS07775 PF04468 PSP1 C-terminal conserved region RN87_RS07780 PF04002 RadC-like JAB domain RN87_RS07785 PF02277 Phosphoribosyltransferase RN87_RS07790 PF00300 Histidine phosphatase superfamily (branch 1) RN87_RS07795 PF02654 Cobalamin-5-phosphate synthase RN87_RS07800 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase RN87_RS07805 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RN87_RS07805 PF02843 Phosphoribosylglycinamide synthetase, C domain RN87_RS07805 PF02844 Phosphoribosylglycinamide synthetase, N domain RN87_RS07815 PF01808 AICARFT/IMPCHase bienzyme RN87_RS07815 PF02142 MGS-like domain RN87_RS07820 PF00551 Formyl transferase RN87_RS07825 PF02769 AIR synthase related protein, C-terminal domain RN87_RS07825 PF00586 AIR synthase related protein, N-terminal domain RN87_RS07830 PF00156 Phosphoribosyl transferase domain RN87_RS07835 PF01259 SAICAR synthetase RN87_RS07840 PF00731 AIR carboxylase RN87_RS07845 PF02769 AIR synthase related protein, C-terminal domain RN87_RS07845 PF00586 AIR synthase related protein, N-terminal domain RN87_RS07845 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RN87_RS07850 PF01066 CDP-alcohol phosphatidyltransferase RN87_RS07860 PF02386 Cation transport protein RN87_RS07870 PF09529 Integral membrane protein (intg_mem_TP0381) RN87_RS07880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN87_RS07885 PF05343 M42 glutamyl aminopeptidase RN87_RS07890 PF04055 Radical SAM superfamily RN87_RS07890 PF06968 Biotin and Thiamin Synthesis associated domain RN87_RS07900 PF00202 Aminotransferase class-III RN87_RS07915 PF04055 Radical SAM superfamily RN87_RS07935 PF00753 Metallo-beta-lactamase superfamily RN87_RS07935 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RN87_RS07935 PF17770 Ribonuclease J C-terminal domain RN87_RS07950 PF04055 Radical SAM superfamily RN87_RS07955 PF04055 Radical SAM superfamily RN87_RS07955 PF02310 B12 binding domain RN87_RS07960 PF02310 B12 binding domain RN87_RS07960 PF04055 Radical SAM superfamily RN87_RS07995 PF04472 Cell division protein SepF RN87_RS08000 PF01368 DHH family RN87_RS08000 PF02272 DHHA1 domain RN87_RS08005 PF02603 HPr Serine kinase N terminus RN87_RS08005 PF07475 HPr Serine kinase C-terminal domain RN87_RS08015 PF02875 Mur ligase family, glutamate ligase domain RN87_RS08015 PF08245 Mur ligase middle domain RN87_RS08025 PF01048 Phosphorylase superfamily RN87_RS08040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RN87_RS08040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RN87_RS08045 PF00378 Enoyl-CoA hydratase/isomerase RN87_RS08050 PF00690 Cation transporter/ATPase, N-terminus RN87_RS08050 PF00689 Cation transporting ATPase, C-terminus RN87_RS08055 PF00216 Bacterial DNA-binding protein RN87_RS08060 PF00860 Permease family RN87_RS08065 PF01479 S4 domain RN87_RS08065 PF00849 RNA pseudouridylate synthase RN87_RS08070 PF01098 Cell cycle protein RN87_RS08075 PF00692 dUTPase RN87_RS08080 PF00675 Insulinase (Peptidase family M16) RN87_RS08080 PF05193 Peptidase M16 inactive domain RN87_RS08100 PF17785 PUA-like domain RN87_RS08100 PF10672 S-adenosylmethionine-dependent methyltransferase RN87_RS08105 PF13276 HTH-like domain RN87_RS08105 PF00665 Integrase core domain RN87_RS08105 PF13333 Integrase core domain RN87_RS08135 PF00005 ABC transporter RN87_RS08140 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS08150 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RN87_RS08150 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RN87_RS08165 PF12706 Beta-lactamase superfamily domain RN87_RS08170 PF03591 AzlC protein RN87_RS08175 PF05437 Branched-chain amino acid transport protein (AzlD) RN87_RS08200 PF17783 CvfB-like winged helix domain RN87_RS08200 PF13509 S1 domain RN87_RS08255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RN87_RS08295 PF00291 Pyridoxal-phosphate dependent enzyme RN87_RS08310 PF05525 Branched-chain amino acid transport protein RN87_RS08315 PF05406 WGR domain RN87_RS08325 PF07687 Peptidase dimerisation domain RN87_RS08325 PF01546 Peptidase family M20/M25/M40 RN87_RS08340 PF13742 OB-fold nucleic acid binding domain RN87_RS08340 PF02601 Exonuclease VII, large subunit RN87_RS08350 PF18255 DNA processing protein A sterile alpha motif domain RN87_RS08350 PF02481 DNA recombination-mediator protein A RN87_RS08355 PF01131 DNA topoisomerase RN87_RS08355 PF01396 Topoisomerase DNA binding C4 zinc finger RN87_RS08355 PF01751 Toprim domain RN87_RS08360 PF01134 Glucose inhibited division protein A RN87_RS08365 PF00589 Phage integrase family RN87_RS08365 PF02899 Phage integrase, N-terminal SAM-like domain RN87_RS08370 PF01926 50S ribosome-binding GTPase RN87_RS08380 PF02881 SRP54-type protein, helical bundle domain RN87_RS08380 PF00448 SRP54-type protein, GTPase domain RN87_RS08410 PF00664 ABC transporter transmembrane region RN87_RS08410 PF00005 ABC transporter RN87_RS08435 PF00857 Isochorismatase family RN87_RS08445 PF07992 Pyridine nucleotide-disulphide oxidoreductase RN87_RS08445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RN87_RS08450 PF03668 P-loop ATPase protein family RN87_RS08455 PF01541 GIY-YIG catalytic domain RN87_RS08455 PF02151 UvrB/uvrC motif RN87_RS08455 PF08459 UvrC Helix-hairpin-helix N-terminal RN87_RS08460 PF07228 Stage II sporulation protein E (SpoIIE) RN87_RS08460 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain RN87_RS08465 PF07136 Protein of unknown function (DUF1385) RN87_RS08475 PF13361 UvrD-like helicase C-terminal domain RN87_RS08475 PF00580 UvrD/REP helicase N-terminal domain RN87_RS08505 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family RN87_RS08510 PF17755 UvrA DNA-binding domain RN87_RS08510 PF17760 UvrA interaction domain RN87_RS08520 PF07499 RuvA, C-terminal domain RN87_RS08520 PF01330 RuvA N terminal domain RN87_RS08530 PF03315 Serine dehydratase beta chain RN87_RS08530 PF03313 Serine dehydratase alpha chain RN87_RS08545 PF00005 ABC transporter RN87_RS08545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN87_RS08550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN87_RS08550 PF00005 ABC transporter RN87_RS08555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN87_RS08560 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS08565 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS08575 PF03824 High-affinity nickel-transport protein RN87_RS08585 PF03575 Peptidase family S51 RN87_RS08590 PF00829 Ribosomal prokaryotic L21 protein RN87_RS08600 PF01016 Ribosomal L27 protein RN87_RS08605 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RN87_RS08605 PF00056 lactate/malate dehydrogenase, NAD binding domain RN87_RS08610 PF02653 Branched-chain amino acid transport system / permease component RN87_RS08615 PF00005 ABC transporter RN87_RS08620 PF13407 Periplasmic binding protein domain RN87_RS08625 PF00480 ROK family RN87_RS08630 PF12706 Beta-lactamase superfamily domain RN87_RS08635 PF07992 Pyridine nucleotide-disulphide oxidoreductase RN87_RS08640 PF00753 Metallo-beta-lactamase superfamily RN87_RS08645 PF01168 Alanine racemase, N-terminal domain RN87_RS08650 PF01235 Sodium:alanine symporter family RN87_RS08655 PF01546 Peptidase family M20/M25/M40 RN87_RS08660 PF13941 MutL protein RN87_RS08665 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase RN87_RS08665 PF02310 B12 binding domain RN87_RS08665 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit RN87_RS08670 PF16552 D-ornithine 4,5-aminomutase alpha-subunit RN87_RS08675 PF00291 Pyridoxal-phosphate dependent enzyme RN87_RS08690 PF00158 Sigma-54 interaction domain RN87_RS08690 PF13426 PAS domain RN87_RS08690 PF02954 Bacterial regulatory protein, Fis family RN87_RS08695 PF01177 Asp/Glu/Hydantoin racemase RN87_RS08700 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded RN87_RS08710 PF01327 Polypeptide deformylase RN87_RS08715 PF04851 Type III restriction enzyme, res subunit RN87_RS08715 PF00271 Helicase conserved C-terminal domain RN87_RS08715 PF17764 3′ DNA-binding domain (3′BD) RN87_RS08715 PF18074 Primosomal protein N C-terminal domain RN87_RS08715 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RN87_RS08720 PF03717 Penicillin-binding Protein dimerisation domain RN87_RS08720 PF03793 PASTA domain RN87_RS08720 PF00905 Penicillin binding protein transpeptidase domain RN87_RS08725 PF03631 Virulence factor BrkB RN87_RS08735 PF00155 Aminotransferase class I and II RN87_RS08740 PF01554 MatE RN87_RS08750 PF12705 PD-(D/E)XK nuclease superfamily RN87_RS08750 PF13361 UvrD-like helicase C-terminal domain RN87_RS08750 PF00580 UvrD/REP helicase N-terminal domain RN87_RS08760 PF03313 Serine dehydratase alpha chain RN87_RS08775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN87_RS08780 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS08785 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS08790 PF00005 ABC transporter RN87_RS08790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN87_RS08795 PF00005 ABC transporter RN87_RS08795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN87_RS08810 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RN87_RS08815 PF16199 Radical_SAM C-terminal domain RN87_RS08815 PF04055 Radical SAM superfamily RN87_RS08820 PF01226 Formate/nitrite transporter RN87_RS08830 PF01869 BadF/BadG/BcrA/BcrD ATPase family RN87_RS08840 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS08845 PF00005 ABC transporter RN87_RS08860 PF01979 Amidohydrolase family RN87_RS08865 PF01467 Cytidylyltransferase-like RN87_RS08875 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RN87_RS08880 PF02463 RecF/RecN/SMC N terminal domain RN87_RS08880 PF06470 SMC proteins Flexible Hinge Domain RN87_RS08890 PF07676 WD40-like Beta Propeller Repeat RN87_RS08890 PF00326 Prolyl oligopeptidase family RN87_RS08900 PF04011 LemA family RN87_RS08905 PF00223 Photosystem I psaA/psaB protein RN87_RS08905 PF00691 OmpA family RN87_RS08910 PF00578 AhpC/TSA family RN87_RS08915 PF00501 AMP-binding enzyme RN87_RS08920 PF08903 Domain of unknown function (DUF1846) RN87_RS08925 PF01293 Phosphoenolpyruvate carboxykinase RN87_RS08930 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RN87_RS08930 PF10371 Domain of unknown function RN87_RS08930 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RN87_RS08930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RN87_RS08930 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RN87_RS08935 PF00871 Acetokinase family RN87_RS08940 PF02525 Flavodoxin-like fold RN87_RS08945 PF01515 Phosphate acetyl/butaryl transferase RN87_RS08950 PF09827 CRISPR associated protein Cas2 RN87_RS08955 PF01867 CRISPR associated protein Cas1 RN87_RS08995 PF02146 Sir2 family RN87_RS09000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN87_RS09000 PF00005 ABC transporter RN87_RS09005 PF00005 ABC transporter RN87_RS09010 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS09015 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS09020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN87_RS09025 PF01546 Peptidase family M20/M25/M40 RN87_RS09025 PF07687 Peptidase dimerisation domain RN87_RS09030 PF00497 Bacterial extracellular solute-binding proteins, family 3 RN87_RS09065 PF00817 impB/mucB/samB family RN87_RS09065 PF11799 impB/mucB/samB family C-terminal domain RN87_RS09075 PF02767 DNA polymerase III beta subunit, central domain RN87_RS09075 PF00712 DNA polymerase III beta subunit, N-terminal domain RN87_RS09075 PF02768 DNA polymerase III beta subunit, C-terminal domain RN87_RS09080 PF13416 Bacterial extracellular solute-binding protein RN87_RS09085 PF05552 Conserved TM helix RN87_RS09085 PF00924 Mechanosensitive ion channel RN87_RS09090 PF00155 Aminotransferase class I and II RN87_RS09095 PF13520 Amino acid permease RN87_RS09105 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RN87_RS09105 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RN87_RS09125 PF00155 Aminotransferase class I and II RN87_RS09135 PF01380 SIS domain RN87_RS09140 PF01380 SIS domain RN87_RS09145 PF03613 PTS system mannose/fructose/sorbose family IID component RN87_RS09150 PF03609 PTS system sorbose-specific iic component RN87_RS09155 PF03830 PTS system sorbose subfamily IIB component RN87_RS09170 PF14492 Elongation Factor G, domain II RN87_RS09170 PF00009 Elongation factor Tu GTP binding domain RN87_RS09170 PF03144 Elongation factor Tu domain 2 RN87_RS09170 PF00679 Elongation factor G C-terminus RN87_RS09175 PF01509 TruB family pseudouridylate synthase (N terminal domain) RN87_RS09175 PF16198 tRNA pseudouridylate synthase B C-terminal domain RN87_RS09250 PF02602 Uroporphyrinogen-III synthase HemD RN87_RS09250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RN87_RS09255 PF00117 Glutamine amidotransferase class-I RN87_RS09255 PF00958 GMP synthase C terminal domain RN87_RS09255 PF03352 Methyladenine glycosylase RN87_RS09255 PF13673 Acetyltransferase (GNAT) domain RN87_RS09255 PF13302 Acetyltransferase (GNAT) domain RN87_RS09260 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RN87_RS09260 PF03900 Porphobilinogen deaminase, C-terminal domain RN87_RS09265 PF01488 Shikimate / quinate 5-dehydrogenase RN87_RS09265 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RN87_RS09270 PF00849 RNA pseudouridylate synthase RN87_RS09275 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RN87_RS09275 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RN87_RS09285 PF00162 Phosphoglycerate kinase RN87_RS09310 PF02540 NAD synthase RN87_RS09315 PF01926 50S ribosome-binding GTPase RN87_RS09320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RN87_RS09325 PF13180 PDZ domain RN87_RS09325 PF03572 Peptidase family S41 RN87_RS09330 PF01479 S4 domain RN87_RS09330 PF01728 FtsJ-like methyltransferase RN87_RS09340 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RN87_RS09340 PF02779 Transketolase, pyrimidine binding domain RN87_RS09340 PF02780 Transketolase, C-terminal domain RN87_RS09345 PF01985 CRS1 / YhbY (CRM) domain RN87_RS09350 PF00753 Metallo-beta-lactamase superfamily RN87_RS09350 PF17770 Ribonuclease J C-terminal domain RN87_RS09350 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RN87_RS09355 PF03717 Penicillin-binding Protein dimerisation domain RN87_RS09355 PF00905 Penicillin binding protein transpeptidase domain RN87_RS09370 PF04055 Radical SAM superfamily RN87_RS09370 PF01938 TRAM domain RN87_RS09370 PF00919 Uncharacterized protein family UPF0004 RN87_RS09375 PF04452 RNA methyltransferase RN87_RS09380 PF02082 Transcriptional regulator RN87_RS09385 PF05491 RuvB C-terminal winged helix domain RN87_RS09385 PF17864 RuvB AAA lid domain RN87_RS09385 PF05496 Holliday junction DNA helicase RuvB P-loop domain RN87_RS09390 PF04286 Protein of unknown function (DUF445) RN87_RS09405 PF00291 Pyridoxal-phosphate dependent enzyme RN87_RS09430 PF00795 Carbon-nitrogen hydrolase RN87_RS09430 PF00583 Acetyltransferase (GNAT) family RN87_RS09440 PF00793 DAHP synthetase I family RN87_RS09445 PF08245 Mur ligase middle domain RN87_RS09445 PF02875 Mur ligase family, glutamate ligase domain RN87_RS09445 PF01225 Mur ligase family, catalytic domain RN87_RS09450 PF03167 Uracil DNA glycosylase superfamily RN87_RS09470 PF00478 IMP dehydrogenase / GMP reductase domain RN87_RS09470 PF00571 CBS domain RN87_RS09475 PF01638 HxlR-like helix-turn-helix RN87_RS09480 PF02525 Flavodoxin-like fold RN87_RS09490 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RN87_RS09490 PF00367 phosphotransferase system, EIIB RN87_RS09490 PF02378 Phosphotransferase system, EIIC RN87_RS09495 PF08244 Glycosyl hydrolases family 32 C terminal RN87_RS09495 PF00251 Glycosyl hydrolases family 32 N-terminal domain RN87_RS09530 PF13439 Glycosyltransferase Family 4 RN87_RS09530 PF00534 Glycosyl transferases group 1 RN87_RS09535 PF13439 Glycosyltransferase Family 4 RN87_RS09535 PF00534 Glycosyl transferases group 1 RN87_RS09540 PF12464 Maltose acetyltransferase RN87_RS09540 PF14602 Hexapeptide repeat of succinyl-transferase RN87_RS09545 PF00132 Bacterial transferase hexapeptide (six repeats) RN87_RS09545 PF14602 Hexapeptide repeat of succinyl-transferase RN87_RS09545 PF12464 Maltose acetyltransferase RN87_RS09555 PF00535 Glycosyl transferase family 2 RN87_RS09560 PF00155 Aminotransferase class I and II RN87_RS09565 PF08759 Glycosyltransferase GT-D fold RN87_RS09565 PF01501 Glycosyl transferase family 8 RN87_RS09570 PF00860 Permease family RN87_RS09575 PF03239 Iron permease FTR1 family RN87_RS09580 PF10634 Fe2+ transport protein RN87_RS09595 PF00881 Nitroreductase family RN87_RS09600 PF13344 Haloacid dehalogenase-like hydrolase RN87_RS09605 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RN87_RS09615 PF03480 Bacterial extracellular solute-binding protein, family 7 RN87_RS09620 PF03167 Uracil DNA glycosylase superfamily RN87_RS09625 PF00512 His Kinase A (phospho-acceptor) domain RN87_RS09625 PF00672 HAMP domain RN87_RS09625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN87_RS09630 PF00072 Response regulator receiver domain RN87_RS09630 PF00486 Transcriptional regulatory protein, C terminal RN87_RS09640 PF06180 Cobalt chelatase (CbiK) RN87_RS09650 PF00691 OmpA family RN87_RS09650 PF13488 Glycine zipper RN87_RS09655 PF00483 Nucleotidyl transferase RN87_RS09665 PF00133 tRNA synthetases class I (I, L, M and V) RN87_RS09665 PF01588 Putative tRNA binding domain RN87_RS09665 PF09334 tRNA synthetases class I (M) RN87_RS09665 PF08264 Anticodon-binding domain of tRNA RN87_RS09675 PF02575 YbaB/EbfC DNA-binding family RN87_RS09680 PF01343 Peptidase family S49 RN87_RS09700 PF00873 AcrB/AcrD/AcrF family RN87_RS09710 PF01546 Peptidase family M20/M25/M40 RN87_RS09710 PF07687 Peptidase dimerisation domain RN87_RS09720 PF00120 Glutamine synthetase, catalytic domain RN87_RS09720 PF12437 Glutamine synthetase type III N terminal RN87_RS09720 PF18318 Glutamine synthetase C-terminal domain RN87_RS09725 PF01544 CorA-like Mg2+ transporter protein RN87_RS09730 PF04309 Glycerol-3-phosphate responsive antiterminator RN87_RS09740 PF00691 OmpA family RN87_RS09760 PF07670 Nucleoside recognition RN87_RS09765 PF13726 Na+-H+ antiporter family RN87_RS09765 PF03553 Na+/H+ antiporter family RN87_RS09770 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RN87_RS09780 PF02926 THUMP domain RN87_RS09780 PF01170 Putative RNA methylase family UPF0020 RN87_RS09785 PF01594 AI-2E family transporter RN87_RS09795 PF02666 Phosphatidylserine decarboxylase RN87_RS09800 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain RN87_RS09800 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RN87_RS09800 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RN87_RS09805 PF02580 D-Tyr-tRNA(Tyr) deacylase RN87_RS09820 PF03553 Na+/H+ antiporter family RN87_RS09835 PF01063 Amino-transferase class IV RN87_RS09845 PF00438 S-adenosylmethionine synthetase, N-terminal domain RN87_RS09845 PF02772 S-adenosylmethionine synthetase, central domain RN87_RS09845 PF02773 S-adenosylmethionine synthetase, C-terminal domain RN87_RS09850 PF00665 Integrase core domain RN87_RS09850 PF13276 HTH-like domain RN87_RS09850 PF13333 Integrase core domain RN87_RS09860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RN87_RS09865 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RN87_RS09870 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RN87_RS09870 PF02874 ATP synthase alpha/beta family, beta-barrel domain RN87_RS09875 PF00231 ATP synthase RN87_RS09880 PF02874 ATP synthase alpha/beta family, beta-barrel domain RN87_RS09880 PF00306 ATP synthase alpha/beta chain, C terminal domain RN87_RS09880 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RN87_RS09885 PF00213 ATP synthase delta (OSCP) subunit RN87_RS09890 PF00430 ATP synthase B/B' CF(0) RN87_RS09895 PF00137 ATP synthase subunit C RN87_RS09900 PF00119 ATP synthase A chain RN87_RS09905 PF03899 ATP synthase I chain RN87_RS09915 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RN87_RS09915 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RN87_RS09915 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RN87_RS09915 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RN87_RS09925 PF13649 Methyltransferase domain RN87_RS09930 PF00206 Lyase RN87_RS09930 PF10397 Adenylosuccinate lyase C-terminus RN87_RS09935 PF00583 Acetyltransferase (GNAT) family RN87_RS09940 PF10502 Signal peptidase, peptidase S26 RN87_RS09950 PF01368 DHH family RN87_RS09950 PF10141 Single-strand DNA-specific exonuclease, C terminal domain RN87_RS09950 PF02272 DHHA1 domain RN87_RS09950 PF17768 RecJ OB domain RN87_RS09965 PF00005 ABC transporter RN87_RS09965 PF08402 TOBE domain RN87_RS09970 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS09975 PF04072 Leucine carboxyl methyltransferase RN87_RS09995 PF01522 Polysaccharide deacetylase RN87_RS10020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN87_RS10025 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS10030 PF12911 N-terminal TM domain of oligopeptide transport permease C RN87_RS10030 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS10035 PF00005 ABC transporter RN87_RS10035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN87_RS10040 PF00005 ABC transporter RN87_RS10040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN87_RS10045 PF13276 HTH-like domain RN87_RS10045 PF00665 Integrase core domain RN87_RS10045 PF13333 Integrase core domain RN87_RS10055 PF08218 Citrate lyase ligase C-terminal domain RN87_RS10060 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase RN87_RS10065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RN87_RS10070 PF00291 Pyridoxal-phosphate dependent enzyme RN87_RS10080 PF01029 NusB family RN87_RS10080 PF01189 16S rRNA methyltransferase RsmB/F RN87_RS10090 PF13597 Anaerobic ribonucleoside-triphosphate reductase RN87_RS10090 PF03477 ATP cone domain RN87_RS10095 PF00005 ABC transporter RN87_RS10095 PF17912 MalK OB fold domain RN87_RS10100 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS10110 PF00005 ABC transporter RN87_RS10115 PF01032 FecCD transport family RN87_RS10130 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family RN87_RS10140 PF01336 OB-fold nucleic acid binding domain RN87_RS10140 PF00152 tRNA synthetases class II (D, K and N) RN87_RS10140 PF02938 GAD domain RN87_RS10145 PF13393 Histidyl-tRNA synthetase RN87_RS10145 PF03129 Anticodon binding domain RN87_RS10150 PF12002 MgsA AAA+ ATPase C terminal RN87_RS10150 PF00004 ATPase family associated with various cellular activities (AAA) RN87_RS10150 PF16193 AAA C-terminal domain RN87_RS10165 PF02779 Transketolase, pyrimidine binding domain RN87_RS10165 PF02780 Transketolase, C-terminal domain RN87_RS10170 PF00456 Transketolase, thiamine diphosphate binding domain RN87_RS10205 PF00156 Phosphoribosyl transferase domain RN87_RS10210 PF00398 Ribosomal RNA adenine dimethylase RN87_RS10225 PF01782 RimM N-terminal domain RN87_RS10225 PF05239 PRC-barrel domain RN87_RS10230 PF01746 tRNA (Guanine-1)-methyltransferase RN87_RS10235 PF09936 SAM-dependent RNA methyltransferase RN87_RS10240 PF14579 Helix-hairpin-helix motif RN87_RS10240 PF11490 DNA polymerase III polC-type N-terminus II RN87_RS10240 PF07733 Bacterial DNA polymerase III alpha NTPase domain RN87_RS10240 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RN87_RS10240 PF02811 PHP domain RN87_RS10240 PF00929 Exonuclease RN87_RS10250 PF04333 MlaA lipoprotein RN87_RS10255 PF01546 Peptidase family M20/M25/M40 RN87_RS10265 PF02690 Na+/Pi-cotransporter RN87_RS10270 PF02595 Glycerate kinase family RN87_RS10275 PF13556 PucR C-terminal helix-turn-helix domain RN87_RS10275 PF05651 Putative sugar diacid recognition RN87_RS10275 PF17853 GGDEF-like domain RN87_RS10280 PF00248 Aldo/keto reductase family RN87_RS10285 PF00701 Dihydrodipicolinate synthetase family RN87_RS10290 PF13378 Enolase C-terminal domain-like RN87_RS10295 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RN87_RS10295 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RN87_RS10300 PF02447 GntP family permease RN87_RS10305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RN87_RS10305 PF03466 LysR substrate binding domain RN87_RS10310 PF08666 SAF domain RN87_RS10310 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RN87_RS10320 PF00296 Luciferase-like monooxygenase RN87_RS10330 PF00183 Hsp90 protein RN87_RS10330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN87_RS10335 PF00274 Fructose-bisphosphate aldolase class-I RN87_RS10345 PF06414 Zeta toxin RN87_RS10360 PF00453 Ribosomal protein L20 RN87_RS10365 PF01632 Ribosomal protein L35 RN87_RS10370 PF05198 Translation initiation factor IF-3, N-terminal domain RN87_RS10370 PF00707 Translation initiation factor IF-3, C-terminal domain RN87_RS10375 PF01235 Sodium:alanine symporter family RN87_RS10380 PF00572 Ribosomal protein L13 RN87_RS10385 PF00380 Ribosomal protein S9/S16 RN87_RS10390 PF18644 Phage integrase SAM-like domain RN87_RS10390 PF00589 Phage integrase family RN87_RS10475 PF02463 RecF/RecN/SMC N terminal domain RN87_RS10485 PF16123 Hydroxyacylglutathione hydrolase C-terminus RN87_RS10485 PF00753 Metallo-beta-lactamase superfamily RN87_RS10490 PF01196 Ribosomal protein L17 RN87_RS10495 PF01000 RNA polymerase Rpb3/RpoA insert domain RN87_RS10495 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RN87_RS10495 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RN87_RS10500 PF01479 S4 domain RN87_RS10500 PF00163 Ribosomal protein S4/S9 N-terminal domain RN87_RS10505 PF00411 Ribosomal protein S11 RN87_RS10510 PF00416 Ribosomal protein S13/S18 RN87_RS10515 PF00444 Ribosomal protein L36 RN87_RS10520 PF01176 Translation initiation factor 1A / IF-1 RN87_RS10550 PF00557 Metallopeptidase family M24 RN87_RS10565 PF12848 ABC transporter RN87_RS10565 PF00005 ABC transporter RN87_RS10575 PF01923 Cobalamin adenosyltransferase RN87_RS10580 PF00436 Single-strand binding protein family RN87_RS10590 PF12147 Putative methyltransferase RN87_RS10590 PF12146 Serine aminopeptidase, S33 RN87_RS10595 PF01066 CDP-alcohol phosphatidyltransferase RN87_RS10615 PF02472 Biopolymer transport protein ExbD/TolR RN87_RS10620 PF01618 MotA/TolQ/ExbB proton channel family RN87_RS10625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN87_RS10635 PF13333 Integrase core domain RN87_RS10635 PF00665 Integrase core domain RN87_RS10635 PF13276 HTH-like domain RN87_RS10650 PF01784 NIF3 (NGG1p interacting factor 3) RN87_RS10655 PF00140 Sigma-70 factor, region 1.2 RN87_RS10655 PF04545 Sigma-70, region 4 RN87_RS10655 PF04539 Sigma-70 region 3 RN87_RS10655 PF04542 Sigma-70 region 2 RN87_RS10660 PF04539 Sigma-70 region 3 RN87_RS10660 PF04542 Sigma-70 region 2 RN87_RS10660 PF03979 Sigma-70 factor, region 1.1 RN87_RS10660 PF04545 Sigma-70, region 4 RN87_RS10660 PF00140 Sigma-70 factor, region 1.2 RN87_RS10665 PF10410 DnaB-helicase binding domain of primase RN87_RS10665 PF08275 DNA primase catalytic core, N-terminal domain RN87_RS10665 PF01807 CHC2 zinc finger RN87_RS10670 PF13145 PPIC-type PPIASE domain RN87_RS10675 PF00072 Response regulator receiver domain RN87_RS10675 PF00158 Sigma-54 interaction domain RN87_RS10675 PF02954 Bacterial regulatory protein, Fis family RN87_RS10680 PF02163 Peptidase family M50 RN87_RS10680 PF00595 PDZ domain RN87_RS10690 PF13288 DXP reductoisomerase C-terminal domain RN87_RS10690 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RN87_RS10690 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RN87_RS10700 PF01255 Putative undecaprenyl diphosphate synthase RN87_RS10705 PF00348 Polyprenyl synthetase RN87_RS10710 PF02609 Exonuclease VII small subunit RN87_RS10720 PF02547 Queuosine biosynthesis protein RN87_RS10725 PF05175 Methyltransferase small domain RN87_RS10725 PF17827 PrmC N-terminal domain RN87_RS10730 PF03462 PCRF domain RN87_RS10730 PF00472 RF-1 domain RN87_RS10740 PF01520 N-acetylmuramoyl-L-alanine amidase RN87_RS10740 PF11741 AMIN domain RN87_RS10770 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system RN87_RS10775 PF01053 Cys/Met metabolism PLP-dependent enzyme RN87_RS10785 PF00497 Bacterial extracellular solute-binding proteins, family 3 RN87_RS10790 PF00005 ABC transporter RN87_RS10795 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS10800 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS10805 PF03895 YadA-like membrane anchor domain RN87_RS10805 PF05658 Head domain of trimeric autotransporter adhesin RN87_RS10805 PF13018 Extended Signal Peptide of Type V secretion system RN87_RS10805 PF05662 Coiled stalk of trimeric autotransporter adhesin RN87_RS10810 PF01177 Asp/Glu/Hydantoin racemase RN87_RS10820 PF07650 KH domain RN87_RS10820 PF01926 50S ribosome-binding GTPase RN87_RS10825 PF00589 Phage integrase family RN87_RS10825 PF02899 Phage integrase, N-terminal SAM-like domain RN87_RS10830 PF02463 RecF/RecN/SMC N terminal domain RN87_RS10835 PF01513 ATP-NAD kinase RN87_RS10860 PF01228 Glycine radical RN87_RS10860 PF02901 Pyruvate formate lyase-like RN87_RS10865 PF04055 Radical SAM superfamily RN87_RS10870 PF01022 Bacterial regulatory protein, arsR family RN87_RS10880 PF00403 Heavy-metal-associated domain RN87_RS10885 PF03180 NLPA lipoprotein RN87_RS10890 PF01053 Cys/Met metabolism PLP-dependent enzyme RN87_RS10895 PF03606 C4-dicarboxylate anaerobic carrier RN87_RS10905 PF05736 OprF membrane domain RN87_RS10905 PF00691 OmpA family RN87_RS10920 PF09190 DALR domain RN87_RS10920 PF01406 tRNA synthetases class I (C) catalytic domain RN87_RS10925 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RN87_RS10950 PF00403 Heavy-metal-associated domain RN87_RS10960 PF13735 tRNA nucleotidyltransferase domain 2 putative RN87_RS10960 PF12627 Probable RNA and SrmB- binding site of polymerase A RN87_RS10960 PF01743 Poly A polymerase head domain RN87_RS10965 PF02254 TrkA-N domain RN87_RS10965 PF02080 TrkA-C domain RN87_RS10975 PF00303 Thymidylate synthase RN87_RS11000 PF00528 Binding-protein-dependent transport system inner membrane component RN87_RS11005 PF09084 NMT1/THI5 like RN87_RS11010 PF00005 ABC transporter RN87_RS11025 PF00455 DeoR C terminal sensor domain RN87_RS11025 PF08220 DeoR-like helix-turn-helix domain RN87_RS11030 PF07005 Sugar-binding N-terminal domain RN87_RS11030 PF17042 Nucleotide-binding C-terminal domain RN87_RS11035 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RN87_RS11045 PF17757 UvrB interaction domain RN87_RS11045 PF00271 Helicase conserved C-terminal domain RN87_RS11045 PF04851 Type III restriction enzyme, res subunit RN87_RS11045 PF02151 UvrB/uvrC motif RN87_RS11045 PF12344 Ultra-violet resistance protein B RN87_RS11050 PF03772 Competence protein RN87_RS11050 PF13567 Domain of unknown function (DUF4131) RN87_RS11050 PF00753 Metallo-beta-lactamase superfamily RN87_RS11070 PF07728 AAA domain (dynein-related subfamily) RN87_RS11070 PF12102 Domain of unknown function (DUF3578) RN87_RS11075 PF02554 Carbon starvation protein CstA RN87_RS11080 PF06580 Histidine kinase RN87_RS11080 PF07694 5TMR of 5TMR-LYT RN87_RS11080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN87_RS11085 PF00072 Response regulator receiver domain RN87_RS11085 PF04397 LytTr DNA-binding domain RN87_RS11090 PF07722 Peptidase C26 RN87_RS11100 PF00106 short chain dehydrogenase RN87_RS11105 PF02308 MgtC family RN87_RS11110 PF02075 Crossover junction endodeoxyribonuclease RuvC RN87_RS11140 PF05973 Phage derived protein Gp49-like (DUF891) RN87_RS11150 PF03781 Sulfatase-modifying factor enzyme 1 RN87_RS11185 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component RN87_RS11190 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component RN87_RS11195 PF01869 BadF/BadG/BcrA/BcrD ATPase family RN87_RS11200 PF03616 Sodium/glutamate symporter RN87_RS11205 PF01039 Carboxyl transferase domain RN87_RS11210 PF01144 Coenzyme A transferase RN87_RS11215 PF01144 Coenzyme A transferase RN87_RS11220 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit RN87_RS11225 PF02436 Conserved carboxylase domain RN87_RS11225 PF00364 Biotin-requiring enzyme RN87_RS11225 PF00682 HMGL-like RN87_RS11245 PF00672 HAMP domain RN87_RS11245 PF06580 Histidine kinase RN87_RS11245 PF02743 Cache domain RN87_RS11245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN87_RS11250 PF00072 Response regulator receiver domain RN87_RS11250 PF12833 Helix-turn-helix domain RN87_RS11255 PF01625 Peptide methionine sulfoxide reductase RN87_RS11255 PF01641 SelR domain RN87_RS11260 PF08534 Redoxin RN87_RS11265 PF02683 Cytochrome C biogenesis protein transmembrane region RN87_RS11285 PF06039 Malate:quinone oxidoreductase (Mqo) RN87_RS11290 PF04324 BFD-like [2Fe-2S] binding domain RN87_RS11290 PF07992 Pyridine nucleotide-disulphide oxidoreductase RN87_RS11300 PF03776 Septum formation topological specificity factor MinE RN87_RS11305 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RN87_RS11310 PF03775 Septum formation inhibitor MinC, C-terminal domain RN87_RS11315 PF03060 Nitronate monooxygenase RN87_RS11335 PF01926 50S ribosome-binding GTPase RN87_RS11335 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RN87_RS11360 PF03781 Sulfatase-modifying factor enzyme 1 RN87_RS11375 PF03781 Sulfatase-modifying factor enzyme 1 RN87_RS11385 PF03781 Sulfatase-modifying factor enzyme 1 RN87_RS11395 PF01510 N-acetylmuramoyl-L-alanine amidase RN87_RS11400 PF02965 Vitamin B12 dependent methionine synthase, activation domain RN87_RS11400 PF00809 Pterin binding enzyme RN87_RS11400 PF02574 Homocysteine S-methyltransferase RN87_RS11400 PF02607 B12 binding domain RN87_RS11400 PF02310 B12 binding domain RN87_RS11405 PF02219 Methylenetetrahydrofolate reductase RN87_RS11410 PF01554 MatE RN87_RS11415 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) RN87_RS11430 PF02457 DisA bacterial checkpoint controller nucleotide-binding RN87_RS11430 PF10635 DisA bacterial checkpoint controller linker region RN87_RS11435 PF18073 Rubredoxin metal binding domain RN87_RS11440 PF01467 Cytidylyltransferase-like RN87_RS11450 PF10150 Ribonuclease E/G family RN87_RS11450 PF00575 S1 RNA binding domain RN87_RS11455 PF04055 Radical SAM superfamily RN87_RS11455 PF16199 Radical_SAM C-terminal domain RN87_RS11460 PF14622 Ribonuclease-III-like RN87_RS11460 PF00035 Double-stranded RNA binding motif RN87_RS11465 PF02801 Beta-ketoacyl synthase, C-terminal domain RN87_RS11465 PF00109 Beta-ketoacyl synthase, N-terminal domain RN87_RS11470 PF00550 Phosphopantetheine attachment site RN87_RS11475 PF00698 Acyl transferase domain RN87_RS11480 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RN87_RS11480 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RN87_RS11485 PF02504 Fatty acid synthesis protein RN87_RS11640 PF00005 ABC transporter RN87_RS11640 PF00664 ABC transporter transmembrane region RN87_RS11810 PF09308 LuxQ, periplasmic RN87_RS11810 PF00072 Response regulator receiver domain RN87_RS11810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN87_RS11810 PF00512 His Kinase A (phospho-acceptor) domain RN87_RS11835 PF02286 Dehydratase large subunit