locus-tag class description HMPREF0409_RS00015 PF02463 RecF/RecN/SMC N terminal domain HMPREF0409_RS00025 PF01751 Toprim domain HMPREF0409_RS00025 PF00204 DNA gyrase B HMPREF0409_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus HMPREF0409_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMPREF0409_RS00030 PF00521 DNA gyrase/topoisomerase IV, subunit A HMPREF0409_RS00030 PF03989 DNA gyrase C-terminal domain, beta-propeller HMPREF0409_RS00040 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HMPREF0409_RS00040 PF01409 tRNA synthetases class II core domain (F) HMPREF0409_RS00045 PF03483 B3/4 domain HMPREF0409_RS00045 PF03484 tRNA synthetase B5 domain HMPREF0409_RS00045 PF03147 Ferredoxin-fold anticodon binding domain HMPREF0409_RS00045 PF01588 Putative tRNA binding domain HMPREF0409_RS00045 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HMPREF0409_RS00065 PF16363 GDP-mannose 4,6 dehydratase HMPREF0409_RS00070 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HMPREF0409_RS00070 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HMPREF0409_RS00080 PF10509 Galactokinase galactose-binding signature HMPREF0409_RS00080 PF08544 GHMP kinases C terminal HMPREF0409_RS00080 PF00288 GHMP kinases N terminal domain HMPREF0409_RS00095 PF03606 C4-dicarboxylate anaerobic carrier HMPREF0409_RS00115 PF16326 ABC transporter C-terminal domain HMPREF0409_RS00115 PF00005 ABC transporter HMPREF0409_RS00115 PF12848 ABC transporter HMPREF0409_RS00120 PF00892 EamA-like transporter family HMPREF0409_RS00130 PF04304 Protein of unknown function (DUF454) HMPREF0409_RS00135 PF10609 NUBPL iron-transfer P-loop NTPase HMPREF0409_RS00150 PF00437 Type II/IV secretion system protein HMPREF0409_RS00155 PF00482 Type II secretion system (T2SS), protein F HMPREF0409_RS00160 PF00114 Pilin (bacterial filament) HMPREF0409_RS00160 PF07963 Prokaryotic N-terminal methylation motif HMPREF0409_RS00195 PF03958 Bacterial type II/III secretion system short domain HMPREF0409_RS00195 PF00263 Bacterial type II and III secretion system protein HMPREF0409_RS00210 PF14537 Cytochrome c3 HMPREF0409_RS00210 PF00890 FAD binding domain HMPREF0409_RS00215 PF03960 ArsC family HMPREF0409_RS00220 PF05525 Branched-chain amino acid transport protein HMPREF0409_RS00225 PF00579 tRNA synthetases class I (W and Y) HMPREF0409_RS00230 PF00583 Acetyltransferase (GNAT) family HMPREF0409_RS00240 PF00633 Helix-hairpin-helix motif HMPREF0409_RS00240 PF00730 HhH-GPD superfamily base excision DNA repair protein HMPREF0409_RS00245 PF00266 Aminotransferase class-V HMPREF0409_RS00250 PF01592 NifU-like N terminal domain HMPREF0409_RS00260 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HMPREF0409_RS00280 PF01555 DNA methylase HMPREF0409_RS00280 PF18755 Restriction Enzyme Adenine Methylase Associated HMPREF0409_RS00300 PF09371 Tex-like protein N-terminal domain HMPREF0409_RS00300 PF00575 S1 RNA binding domain HMPREF0409_RS00300 PF16921 Tex protein YqgF-like domain HMPREF0409_RS00300 PF17674 HHH domain HMPREF0409_RS00305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMPREF0409_RS00305 PF00512 His Kinase A (phospho-acceptor) domain HMPREF0409_RS00310 PF06827 Zinc finger found in FPG and IleRS HMPREF0409_RS00310 PF00133 tRNA synthetases class I (I, L, M and V) HMPREF0409_RS00310 PF08264 Anticodon-binding domain of tRNA HMPREF0409_RS00315 PF01252 Signal peptidase (SPase) II HMPREF0409_RS00320 PF02091 Glycyl-tRNA synthetase alpha subunit HMPREF0409_RS00325 PF02092 Glycyl-tRNA synthetase beta subunit HMPREF0409_RS00325 PF05746 DALR anticodon binding domain HMPREF0409_RS00330 PF01227 GTP cyclohydrolase I HMPREF0409_RS00335 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HMPREF0409_RS00335 PF02152 Dihydroneopterin aldolase HMPREF0409_RS00340 PF00809 Pterin binding enzyme HMPREF0409_RS00345 PF00936 BMC domain HMPREF0409_RS00350 PF10662 Ethanolamine utilisation - propanediol utilisation HMPREF0409_RS00355 PF00072 Response regulator receiver domain HMPREF0409_RS00355 PF03861 ANTAR domain HMPREF0409_RS00360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMPREF0409_RS00360 PF12282 Signal transduction histidine kinase HMPREF0409_RS00360 PF07568 Histidine kinase HMPREF0409_RS00365 PF06277 Ethanolamine utilisation protein EutA HMPREF0409_RS00370 PF06751 Ethanolamine ammonia lyase large subunit (EutB) HMPREF0409_RS00375 PF05985 Ethanolamine ammonia-lyase light chain (EutC) HMPREF0409_RS00380 PF00936 BMC domain HMPREF0409_RS00385 PF00936 BMC domain HMPREF0409_RS00390 PF00936 BMC domain HMPREF0409_RS00395 PF00465 Iron-containing alcohol dehydrogenase HMPREF0409_RS00395 PF00171 Aldehyde dehydrogenase family HMPREF0409_RS00420 PF04346 Ethanolamine utilisation protein, EutH HMPREF0409_RS00435 PF00465 Iron-containing alcohol dehydrogenase HMPREF0409_RS00445 PF00085 Thioredoxin HMPREF0409_RS00480 PF00719 Inorganic pyrophosphatase HMPREF0409_RS00485 PF00970 Oxidoreductase FAD-binding domain HMPREF0409_RS00485 PF00111 2Fe-2S iron-sulfur cluster binding domain HMPREF0409_RS00485 PF00175 Oxidoreductase NAD-binding domain HMPREF0409_RS00495 PF02867 Ribonucleotide reductase, barrel domain HMPREF0409_RS00495 PF00317 Ribonucleotide reductase, all-alpha domain HMPREF0409_RS00495 PF03477 ATP cone domain HMPREF0409_RS00500 PF00268 Ribonucleotide reductase, small chain HMPREF0409_RS00510 PF01613 Flavin reductase like domain HMPREF0409_RS00515 PF08279 HTH domain HMPREF0409_RS00515 PF13280 WYL domain HMPREF0409_RS00525 PF00474 Sodium:solute symporter family HMPREF0409_RS00535 PF02403 Seryl-tRNA synthetase N-terminal domain HMPREF0409_RS00535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HMPREF0409_RS00560 PF01628 HrcA protein C terminal domain HMPREF0409_RS00565 PF01025 GrpE HMPREF0409_RS00570 PF00012 Hsp70 protein HMPREF0409_RS00575 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HMPREF0409_RS00575 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HMPREF0409_RS00580 PF00684 DnaJ central domain HMPREF0409_RS00580 PF01556 DnaJ C terminal domain HMPREF0409_RS00580 PF00226 DnaJ domain HMPREF0409_RS00605 PF12323 Helix-turn-helix domain HMPREF0409_RS00605 PF01385 Probable transposase HMPREF0409_RS00605 PF07282 Putative transposase DNA-binding domain HMPREF0409_RS00630 PF04055 Radical SAM superfamily HMPREF0409_RS00630 PF01018 GTP1/OBG HMPREF0409_RS00630 PF01926 50S ribosome-binding GTPase HMPREF0409_RS00640 PF02492 CobW/HypB/UreG, nucleotide-binding domain HMPREF0409_RS00645 PF00005 ABC transporter HMPREF0409_RS00655 PF01297 Zinc-uptake complex component A periplasmic HMPREF0409_RS00660 PF01297 Zinc-uptake complex component A periplasmic HMPREF0409_RS00665 PF00005 ABC transporter HMPREF0409_RS00670 PF00950 ABC 3 transport family HMPREF0409_RS00700 PF01546 Peptidase family M20/M25/M40 HMPREF0409_RS00700 PF07687 Peptidase dimerisation domain HMPREF0409_RS00705 PF00440 Bacterial regulatory proteins, tetR family HMPREF0409_RS00710 PF03616 Sodium/glutamate symporter HMPREF0409_RS00715 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HMPREF0409_RS00720 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS00725 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS00730 PF08402 TOBE domain HMPREF0409_RS00730 PF00005 ABC transporter HMPREF0409_RS00740 PF00381 PTS HPr component phosphorylation site HMPREF0409_RS00745 PF05524 PEP-utilising enzyme, N-terminal HMPREF0409_RS00745 PF02896 PEP-utilising enzyme, TIM barrel domain HMPREF0409_RS00745 PF00391 PEP-utilising enzyme, mobile domain HMPREF0409_RS00755 PF00293 NUDIX domain HMPREF0409_RS00760 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HMPREF0409_RS00765 PF01554 MatE HMPREF0409_RS00770 PF02542 YgbB family HMPREF0409_RS00775 PF01467 Cytidylyltransferase-like HMPREF0409_RS00775 PF00294 pfkB family carbohydrate kinase HMPREF0409_RS00805 PF00381 PTS HPr component phosphorylation site HMPREF0409_RS00810 PF02401 LytB protein HMPREF0409_RS00810 PF00575 S1 RNA binding domain HMPREF0409_RS00815 PF00575 S1 RNA binding domain HMPREF0409_RS00815 PF02401 LytB protein HMPREF0409_RS00820 PF13683 Integrase core domain HMPREF0409_RS00820 PF01610 Transposase HMPREF0409_RS00895 PF02887 Pyruvate kinase, alpha/beta domain HMPREF0409_RS00895 PF00224 Pyruvate kinase, barrel domain HMPREF0409_RS00900 PF00113 Enolase, C-terminal TIM barrel domain HMPREF0409_RS00900 PF03952 Enolase, N-terminal domain HMPREF0409_RS00950 PF01867 CRISPR associated protein Cas1 HMPREF0409_RS00965 PF03009 Glycerophosphoryl diester phosphodiesterase family HMPREF0409_RS00970 PF01235 Sodium:alanine symporter family HMPREF0409_RS00975 PF01661 Macro domain HMPREF0409_RS00980 PF05195 Aminopeptidase P, N-terminal domain HMPREF0409_RS00980 PF00557 Metallopeptidase family M24 HMPREF0409_RS00985 PF03819 MazG nucleotide pyrophosphohydrolase domain HMPREF0409_RS01005 PF02576 RimP N-terminal domain HMPREF0409_RS01005 PF17384 RimP C-terminal SH3 domain HMPREF0409_RS01010 PF13184 NusA-like KH domain HMPREF0409_RS01010 PF08529 NusA N-terminal domain HMPREF0409_RS01010 PF00575 S1 RNA binding domain HMPREF0409_RS01020 PF00009 Elongation factor Tu GTP binding domain HMPREF0409_RS01020 PF11987 Translation-initiation factor 2 HMPREF0409_RS01020 PF04760 Translation initiation factor IF-2, N-terminal region HMPREF0409_RS01025 PF02033 Ribosome-binding factor A HMPREF0409_RS01030 PF17768 RecJ OB domain HMPREF0409_RS01030 PF01368 DHH family HMPREF0409_RS01030 PF10141 Single-strand DNA-specific exonuclease, C terminal domain HMPREF0409_RS01030 PF02272 DHHA1 domain HMPREF0409_RS01035 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HMPREF0409_RS01035 PF05698 Bacterial trigger factor protein (TF) C-terminus HMPREF0409_RS01035 PF05697 Bacterial trigger factor protein (TF) HMPREF0409_RS01040 PF00574 Clp protease HMPREF0409_RS01045 PF06689 ClpX C4-type zinc finger HMPREF0409_RS01045 PF10431 C-terminal, D2-small domain, of ClpB protein HMPREF0409_RS01045 PF07724 AAA domain (Cdc48 subfamily) HMPREF0409_RS01050 PF00004 ATPase family associated with various cellular activities (AAA) HMPREF0409_RS01050 PF05362 Lon protease (S16) C-terminal proteolytic domain HMPREF0409_RS01050 PF02190 ATP-dependent protease La (LON) substrate-binding domain HMPREF0409_RS01055 PF01926 50S ribosome-binding GTPase HMPREF0409_RS01060 PF08264 Anticodon-binding domain of tRNA HMPREF0409_RS01060 PF00133 tRNA synthetases class I (I, L, M and V) HMPREF0409_RS01060 PF10458 Valyl tRNA synthetase tRNA binding arm HMPREF0409_RS01070 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS01075 PF00005 ABC transporter HMPREF0409_RS01085 PF00255 Glutathione peroxidase HMPREF0409_RS01100 PF01121 Dephospho-CoA kinase HMPREF0409_RS01105 PF01136 Peptidase family U32 HMPREF0409_RS01105 PF16325 Peptidase family U32 C-terminal domain HMPREF0409_RS01110 PF04608 Phosphatidylglycerophosphatase A HMPREF0409_RS01115 PF00994 Probable molybdopterin binding domain HMPREF0409_RS01115 PF18146 Damage-inducible protein CinA KH domain HMPREF0409_RS01115 PF02464 Competence-damaged protein HMPREF0409_RS01120 PF07883 Cupin domain HMPREF0409_RS01125 PF02734 DAK2 domain HMPREF0409_RS01125 PF13684 Dihydroxyacetone kinase family HMPREF0409_RS01130 PF05524 PEP-utilising enzyme, N-terminal HMPREF0409_RS01130 PF00391 PEP-utilising enzyme, mobile domain HMPREF0409_RS01130 PF02896 PEP-utilising enzyme, TIM barrel domain HMPREF0409_RS01130 PF00381 PTS HPr component phosphorylation site HMPREF0409_RS01130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HMPREF0409_RS01135 PF03600 Citrate transporter HMPREF0409_RS01140 PF03600 Citrate transporter HMPREF0409_RS01145 PF07282 Putative transposase DNA-binding domain HMPREF0409_RS01145 PF12323 Helix-turn-helix domain HMPREF0409_RS01145 PF01385 Probable transposase HMPREF0409_RS01160 PF08241 Methyltransferase domain HMPREF0409_RS01170 PF09269 Domain of unknown function (DUF1967) HMPREF0409_RS01170 PF01926 50S ribosome-binding GTPase HMPREF0409_RS01170 PF01018 GTP1/OBG HMPREF0409_RS01195 PF12072 Domain of unknown function (DUF3552) HMPREF0409_RS01195 PF00013 KH domain HMPREF0409_RS01195 PF01966 HD domain HMPREF0409_RS01205 PF07516 SecA Wing and Scaffold domain HMPREF0409_RS01205 PF01043 SecA preprotein cross-linking domain HMPREF0409_RS01205 PF02810 SEC-C motif HMPREF0409_RS01205 PF07517 SecA DEAD-like domain HMPREF0409_RS01210 PF00533 BRCA1 C Terminus (BRCT) domain HMPREF0409_RS01210 PF01653 NAD-dependent DNA ligase adenylation domain HMPREF0409_RS01210 PF03120 NAD-dependent DNA ligase OB-fold domain HMPREF0409_RS01210 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HMPREF0409_RS01210 PF12826 Helix-hairpin-helix motif HMPREF0409_RS01240 PF05958 tRNA (Uracil-5-)-methyltransferase HMPREF0409_RS01250 PF01795 MraW methylase family HMPREF0409_RS01260 PF01066 CDP-alcohol phosphatidyltransferase HMPREF0409_RS01265 PF03725 3' exoribonuclease family, domain 2 HMPREF0409_RS01265 PF01138 3' exoribonuclease family, domain 1 HMPREF0409_RS01265 PF00575 S1 RNA binding domain HMPREF0409_RS01265 PF00013 KH domain HMPREF0409_RS01265 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HMPREF0409_RS01270 PF01263 Aldose 1-epimerase HMPREF0409_RS01275 PF01925 Sulfite exporter TauE/SafE HMPREF0409_RS01280 PF01734 Patatin-like phospholipase HMPREF0409_RS01285 PF01370 NAD dependent epimerase/dehydratase family HMPREF0409_RS01290 PF02673 Bacitracin resistance protein BacA HMPREF0409_RS01295 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HMPREF0409_RS01300 PF04321 RmlD substrate binding domain HMPREF0409_RS01310 PF02719 Polysaccharide biosynthesis protein HMPREF0409_RS01315 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HMPREF0409_RS01325 PF02397 Bacterial sugar transferase HMPREF0409_RS01335 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HMPREF0409_RS01335 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HMPREF0409_RS01335 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HMPREF0409_RS01340 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HMPREF0409_RS01345 PF00132 Bacterial transferase hexapeptide (six repeats) HMPREF0409_RS01345 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HMPREF0409_RS01355 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HMPREF0409_RS01355 PF00132 Bacterial transferase hexapeptide (six repeats) HMPREF0409_RS01355 PF14602 Hexapeptide repeat of succinyl-transferase HMPREF0409_RS01360 PF13579 Glycosyl transferase 4-like domain HMPREF0409_RS01360 PF00534 Glycosyl transferases group 1 HMPREF0409_RS01365 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HMPREF0409_RS01365 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HMPREF0409_RS01420 PF16363 GDP-mannose 4,6 dehydratase HMPREF0409_RS01440 PF01709 Transcriptional regulator HMPREF0409_RS01445 PF17191 RecG wedge domain HMPREF0409_RS01445 PF00270 DEAD/DEAH box helicase HMPREF0409_RS01445 PF00271 Helicase conserved C-terminal domain HMPREF0409_RS01450 PF04073 Aminoacyl-tRNA editing domain HMPREF0409_RS01450 PF03129 Anticodon binding domain HMPREF0409_RS01450 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HMPREF0409_RS01455 PF01250 Ribosomal protein S6 HMPREF0409_RS01460 PF01084 Ribosomal protein S18 HMPREF0409_RS01465 PF01435 Peptidase family M48 HMPREF0409_RS01480 PF01765 Ribosome recycling factor HMPREF0409_RS01485 PF00696 Amino acid kinase family HMPREF0409_RS01490 PF00889 Elongation factor TS HMPREF0409_RS01495 PF00318 Ribosomal protein S2 HMPREF0409_RS01515 PF01029 NusB family HMPREF0409_RS01520 PF02659 Putative manganese efflux pump HMPREF0409_RS01525 PF01078 Magnesium chelatase, subunit ChlI HMPREF0409_RS01525 PF13335 Magnesium chelatase, subunit ChlI C-terminal HMPREF0409_RS01530 PF00437 Type II/IV secretion system protein HMPREF0409_RS01535 PF04055 Radical SAM superfamily HMPREF0409_RS01545 PF01430 Hsp33 protein HMPREF0409_RS01555 PF13277 YmdB-like protein HMPREF0409_RS01565 PF13749 Putative ATP-dependent DNA helicase recG C-terminal HMPREF0409_RS01565 PF00270 DEAD/DEAH box helicase HMPREF0409_RS01565 PF17191 RecG wedge domain HMPREF0409_RS01570 PF02224 Cytidylate kinase HMPREF0409_RS01580 PF02390 Putative methyltransferase HMPREF0409_RS01580 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HMPREF0409_RS01585 PF00709 Adenylosuccinate synthetase HMPREF0409_RS01595 PF04463 Protein of unknown function (DUF523) HMPREF0409_RS01600 PF09186 Domain of unknown function (DUF1949) HMPREF0409_RS01600 PF01205 Uncharacterized protein family UPF0029 HMPREF0409_RS01605 PF00883 Cytosol aminopeptidase family, catalytic domain HMPREF0409_RS01605 PF02789 Cytosol aminopeptidase family, N-terminal domain HMPREF0409_RS01660 PF00005 ABC transporter HMPREF0409_RS01695 PF03009 Glycerophosphoryl diester phosphodiesterase family HMPREF0409_RS01705 PF03006 Haemolysin-III related HMPREF0409_RS01725 PF01649 Ribosomal protein S20 HMPREF0409_RS01735 PF00860 Permease family HMPREF0409_RS01745 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HMPREF0409_RS01750 PF02502 Ribose/Galactose Isomerase HMPREF0409_RS01755 PF01230 HIT domain HMPREF0409_RS01770 PF03061 Thioesterase superfamily HMPREF0409_RS01775 PF05853 beta-keto acid cleavage enzyme HMPREF0409_RS01785 PF04055 Radical SAM superfamily HMPREF0409_RS01785 PF12544 Lysine-2,3-aminomutase HMPREF0409_RS01795 PF05192 MutS domain III HMPREF0409_RS01795 PF01624 MutS domain I HMPREF0409_RS01795 PF05190 MutS family domain IV HMPREF0409_RS01795 PF00488 MutS domain V HMPREF0409_RS01795 PF05188 MutS domain II HMPREF0409_RS01800 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit HMPREF0409_RS01805 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase HMPREF0409_RS01805 PF02310 B12 binding domain HMPREF0409_RS01815 PF03553 Na+/H+ antiporter family HMPREF0409_RS01825 PF02667 Short chain fatty acid transporter HMPREF0409_RS01830 PF01144 Coenzyme A transferase HMPREF0409_RS01835 PF01144 Coenzyme A transferase HMPREF0409_RS01840 PF06368 Methylaspartate mutase E chain (MutE) HMPREF0409_RS01845 PF13941 MutL protein HMPREF0409_RS01850 PF02310 B12 binding domain HMPREF0409_RS01860 PF03725 3' exoribonuclease family, domain 2 HMPREF0409_RS01860 PF01138 3' exoribonuclease family, domain 1 HMPREF0409_RS01865 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMPREF0409_RS01865 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMPREF0409_RS01880 PF01370 NAD dependent epimerase/dehydratase family HMPREF0409_RS01900 PF00106 short chain dehydrogenase HMPREF0409_RS01910 PF08220 DeoR-like helix-turn-helix domain HMPREF0409_RS01910 PF00455 DeoR C terminal sensor domain HMPREF0409_RS01915 PF07005 Sugar-binding N-terminal domain HMPREF0409_RS01915 PF17042 Nucleotide-binding C-terminal domain HMPREF0409_RS01920 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HMPREF0409_RS01925 PF02447 GntP family permease HMPREF0409_RS01930 PF00381 PTS HPr component phosphorylation site HMPREF0409_RS01930 PF00391 PEP-utilising enzyme, mobile domain HMPREF0409_RS01930 PF05524 PEP-utilising enzyme, N-terminal HMPREF0409_RS01930 PF03610 PTS system fructose IIA component HMPREF0409_RS01935 PF02734 DAK2 domain HMPREF0409_RS01940 PF02733 Dak1 domain HMPREF0409_RS01945 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HMPREF0409_RS01945 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HMPREF0409_RS01950 PF00230 Major intrinsic protein HMPREF0409_RS01955 PF00171 Aldehyde dehydrogenase family HMPREF0409_RS01980 PF06130 Phosphate propanoyltransferase HMPREF0409_RS01985 PF00936 BMC domain HMPREF0409_RS01990 PF16365 Ethanolamine utilization protein EutK C-terminus HMPREF0409_RS01990 PF00936 BMC domain HMPREF0409_RS02000 PF08841 Diol dehydratase reactivase ATPase-like domain HMPREF0409_RS02000 PF18427 DD-reactivating factor swiveling domain HMPREF0409_RS02005 PF02287 Dehydratase small subunit HMPREF0409_RS02010 PF02288 Dehydratase medium subunit HMPREF0409_RS02015 PF02286 Dehydratase large subunit HMPREF0409_RS02020 PF00936 BMC domain HMPREF0409_RS02025 PF00465 Iron-containing alcohol dehydrogenase HMPREF0409_RS02030 PF00072 Response regulator receiver domain HMPREF0409_RS02030 PF01627 Hpt domain HMPREF0409_RS02030 PF00512 His Kinase A (phospho-acceptor) domain HMPREF0409_RS02030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMPREF0409_RS02030 PF00672 HAMP domain HMPREF0409_RS02030 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HMPREF0409_RS02035 PF00486 Transcriptional regulatory protein, C terminal HMPREF0409_RS02035 PF00072 Response regulator receiver domain HMPREF0409_RS02060 PF01618 MotA/TolQ/ExbB proton channel family HMPREF0409_RS02075 PF00158 Sigma-54 interaction domain HMPREF0409_RS02075 PF00072 Response regulator receiver domain HMPREF0409_RS02075 PF02954 Bacterial regulatory protein, Fis family HMPREF0409_RS02080 PF12169 DNA polymerase III subunits gamma and tau domain III HMPREF0409_RS02090 PF03948 Ribosomal protein L9, C-terminal domain HMPREF0409_RS02090 PF01281 Ribosomal protein L9, N-terminal domain HMPREF0409_RS02095 PF03796 DnaB-like helicase C terminal domain HMPREF0409_RS02095 PF00772 DnaB-like helicase N terminal domain HMPREF0409_RS02100 PF01136 Peptidase family U32 HMPREF0409_RS02100 PF16325 Peptidase family U32 C-terminal domain HMPREF0409_RS02110 PF02833 DHHA2 domain HMPREF0409_RS02110 PF07085 DRTGG domain HMPREF0409_RS02110 PF00571 CBS domain HMPREF0409_RS02110 PF01368 DHH family HMPREF0409_RS02135 PF00005 ABC transporter HMPREF0409_RS02135 PF00664 ABC transporter transmembrane region HMPREF0409_RS02140 PF00005 ABC transporter HMPREF0409_RS02140 PF00664 ABC transporter transmembrane region HMPREF0409_RS02145 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HMPREF0409_RS02145 PF08479 POTRA domain, ShlB-type HMPREF0409_RS02145 PF17287 POTRA domain HMPREF0409_RS02210 PF02504 Fatty acid synthesis protein HMPREF0409_RS02215 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMPREF0409_RS02215 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMPREF0409_RS02220 PF00698 Acyl transferase domain HMPREF0409_RS02225 PF00550 Phosphopantetheine attachment site HMPREF0409_RS02230 PF02801 Beta-ketoacyl synthase, C-terminal domain HMPREF0409_RS02230 PF00109 Beta-ketoacyl synthase, N-terminal domain HMPREF0409_RS02235 PF14622 Ribonuclease-III-like HMPREF0409_RS02235 PF00035 Double-stranded RNA binding motif HMPREF0409_RS02240 PF16199 Radical_SAM C-terminal domain HMPREF0409_RS02240 PF04055 Radical SAM superfamily HMPREF0409_RS02245 PF10150 Ribonuclease E/G family HMPREF0409_RS02245 PF00575 S1 RNA binding domain HMPREF0409_RS02250 PF01467 Cytidylyltransferase-like HMPREF0409_RS02255 PF18073 Rubredoxin metal binding domain HMPREF0409_RS02260 PF10635 DisA bacterial checkpoint controller linker region HMPREF0409_RS02260 PF02457 DisA bacterial checkpoint controller nucleotide-binding HMPREF0409_RS02265 PF01554 MatE HMPREF0409_RS02270 PF02219 Methylenetetrahydrofolate reductase HMPREF0409_RS02275 PF02310 B12 binding domain HMPREF0409_RS02275 PF02965 Vitamin B12 dependent methionine synthase, activation domain HMPREF0409_RS02275 PF00809 Pterin binding enzyme HMPREF0409_RS02275 PF02574 Homocysteine S-methyltransferase HMPREF0409_RS02275 PF02607 B12 binding domain HMPREF0409_RS02280 PF01510 N-acetylmuramoyl-L-alanine amidase HMPREF0409_RS02320 PF01926 50S ribosome-binding GTPase HMPREF0409_RS02320 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HMPREF0409_RS02335 PF03060 Nitronate monooxygenase HMPREF0409_RS02345 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HMPREF0409_RS02350 PF03776 Septum formation topological specificity factor MinE HMPREF0409_RS02375 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMPREF0409_RS02375 PF04324 BFD-like [2Fe-2S] binding domain HMPREF0409_RS02380 PF01266 FAD dependent oxidoreductase HMPREF0409_RS02410 PF02683 Cytochrome C biogenesis protein transmembrane region HMPREF0409_RS02415 PF08534 Redoxin HMPREF0409_RS02420 PF01641 SelR domain HMPREF0409_RS02420 PF01625 Peptide methionine sulfoxide reductase HMPREF0409_RS02425 PF00072 Response regulator receiver domain HMPREF0409_RS02425 PF00196 Bacterial regulatory proteins, luxR family HMPREF0409_RS02430 PF01385 Probable transposase HMPREF0409_RS02430 PF12323 Helix-turn-helix domain HMPREF0409_RS02430 PF07282 Putative transposase DNA-binding domain HMPREF0409_RS02440 PF00672 HAMP domain HMPREF0409_RS02440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMPREF0409_RS02440 PF06580 Histidine kinase HMPREF0409_RS02440 PF02743 Cache domain HMPREF0409_RS02455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HMPREF0409_RS02460 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS02465 PF12911 N-terminal TM domain of oligopeptide transport permease C HMPREF0409_RS02465 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS02470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HMPREF0409_RS02470 PF00005 ABC transporter HMPREF0409_RS02495 PF00682 HMGL-like HMPREF0409_RS02495 PF02436 Conserved carboxylase domain HMPREF0409_RS02495 PF00364 Biotin-requiring enzyme HMPREF0409_RS02500 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HMPREF0409_RS02505 PF01144 Coenzyme A transferase HMPREF0409_RS02510 PF01144 Coenzyme A transferase HMPREF0409_RS02515 PF01039 Carboxyl transferase domain HMPREF0409_RS02520 PF03616 Sodium/glutamate symporter HMPREF0409_RS02525 PF01869 BadF/BadG/BcrA/BcrD ATPase family HMPREF0409_RS02530 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component HMPREF0409_RS02535 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component HMPREF0409_RS02555 PF02075 Crossover junction endodeoxyribonuclease RuvC HMPREF0409_RS02560 PF02308 MgtC family HMPREF0409_RS02575 PF07722 Peptidase C26 HMPREF0409_RS02580 PF04397 LytTr DNA-binding domain HMPREF0409_RS02580 PF00072 Response regulator receiver domain HMPREF0409_RS02585 PF07694 5TMR of 5TMR-LYT HMPREF0409_RS02585 PF06580 Histidine kinase HMPREF0409_RS02585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMPREF0409_RS02590 PF02554 Carbon starvation protein CstA HMPREF0409_RS02600 PF03772 Competence protein HMPREF0409_RS02600 PF00753 Metallo-beta-lactamase superfamily HMPREF0409_RS02600 PF13567 Domain of unknown function (DUF4131) HMPREF0409_RS02605 PF02151 UvrB/uvrC motif HMPREF0409_RS02605 PF04851 Type III restriction enzyme, res subunit HMPREF0409_RS02605 PF17757 UvrB interaction domain HMPREF0409_RS02605 PF00271 Helicase conserved C-terminal domain HMPREF0409_RS02605 PF12344 Ultra-violet resistance protein B HMPREF0409_RS02635 PF01048 Phosphorylase superfamily HMPREF0409_RS02645 PF03477 ATP cone domain HMPREF0409_RS02645 PF13597 Anaerobic ribonucleoside-triphosphate reductase HMPREF0409_RS02650 PF17912 MalK OB fold domain HMPREF0409_RS02650 PF00005 ABC transporter HMPREF0409_RS02655 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS02665 PF00005 ABC transporter HMPREF0409_RS02680 PF00005 ABC transporter HMPREF0409_RS02685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HMPREF0409_RS02685 PF00005 ABC transporter HMPREF0409_RS02690 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS02695 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS02700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HMPREF0409_RS02705 PF02938 GAD domain HMPREF0409_RS02705 PF00152 tRNA synthetases class II (D, K and N) HMPREF0409_RS02705 PF01336 OB-fold nucleic acid binding domain HMPREF0409_RS02710 PF13393 Histidyl-tRNA synthetase HMPREF0409_RS02710 PF03129 Anticodon binding domain HMPREF0409_RS02715 PF00004 ATPase family associated with various cellular activities (AAA) HMPREF0409_RS02715 PF16193 AAA C-terminal domain HMPREF0409_RS02715 PF12002 MgsA AAA+ ATPase C terminal HMPREF0409_RS02735 PF02779 Transketolase, pyrimidine binding domain HMPREF0409_RS02735 PF02780 Transketolase, C-terminal domain HMPREF0409_RS02740 PF00456 Transketolase, thiamine diphosphate binding domain HMPREF0409_RS02775 PF00156 Phosphoribosyl transferase domain HMPREF0409_RS02780 PF00398 Ribosomal RNA adenine dimethylase HMPREF0409_RS02795 PF05239 PRC-barrel domain HMPREF0409_RS02795 PF01782 RimM N-terminal domain HMPREF0409_RS02800 PF01746 tRNA (Guanine-1)-methyltransferase HMPREF0409_RS02805 PF09936 SAM-dependent RNA methyltransferase HMPREF0409_RS02820 PF04333 MlaA lipoprotein HMPREF0409_RS02825 PF01546 Peptidase family M20/M25/M40 HMPREF0409_RS02835 PF02690 Na+/Pi-cotransporter HMPREF0409_RS02840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMPREF0409_RS02840 PF00183 Hsp90 protein HMPREF0409_RS02845 PF00274 Fructose-bisphosphate aldolase class-I HMPREF0409_RS02855 PF06414 Zeta toxin HMPREF0409_RS02860 PF02661 Fic/DOC family HMPREF0409_RS02860 PF12728 Helix-turn-helix domain HMPREF0409_RS02870 PF00239 Resolvase, N terminal domain HMPREF0409_RS02870 PF02796 Helix-turn-helix domain of resolvase HMPREF0409_RS02885 PF00453 Ribosomal protein L20 HMPREF0409_RS02890 PF01632 Ribosomal protein L35 HMPREF0409_RS02895 PF05198 Translation initiation factor IF-3, N-terminal domain HMPREF0409_RS02895 PF00707 Translation initiation factor IF-3, C-terminal domain HMPREF0409_RS02900 PF01235 Sodium:alanine symporter family HMPREF0409_RS02905 PF00572 Ribosomal protein L13 HMPREF0409_RS02910 PF00380 Ribosomal protein S9/S16 HMPREF0409_RS02920 PF01544 CorA-like Mg2+ transporter protein HMPREF0409_RS02925 PF04309 Glycerol-3-phosphate responsive antiterminator HMPREF0409_RS02935 PF00691 OmpA family HMPREF0409_RS02955 PF03895 YadA-like membrane anchor domain HMPREF0409_RS02955 PF05658 Head domain of trimeric autotransporter adhesin HMPREF0409_RS02965 PF07670 Nucleoside recognition HMPREF0409_RS02970 PF01610 Transposase HMPREF0409_RS02970 PF13683 Integrase core domain HMPREF0409_RS02975 PF13726 Na+-H+ antiporter family HMPREF0409_RS02975 PF03553 Na+/H+ antiporter family HMPREF0409_RS02980 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HMPREF0409_RS02990 PF02926 THUMP domain HMPREF0409_RS02990 PF01170 Putative RNA methylase family UPF0020 HMPREF0409_RS02995 PF01594 AI-2E family transporter HMPREF0409_RS03005 PF02666 Phosphatidylserine decarboxylase HMPREF0409_RS03010 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HMPREF0409_RS03010 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain HMPREF0409_RS03010 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HMPREF0409_RS03015 PF02580 D-Tyr-tRNA(Tyr) deacylase HMPREF0409_RS03050 PF02773 S-adenosylmethionine synthetase, C-terminal domain HMPREF0409_RS03050 PF00438 S-adenosylmethionine synthetase, N-terminal domain HMPREF0409_RS03050 PF02772 S-adenosylmethionine synthetase, central domain HMPREF0409_RS03055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HMPREF0409_RS03060 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HMPREF0409_RS03065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HMPREF0409_RS03065 PF02874 ATP synthase alpha/beta family, beta-barrel domain HMPREF0409_RS03070 PF00231 ATP synthase HMPREF0409_RS03075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HMPREF0409_RS03075 PF00306 ATP synthase alpha/beta chain, C terminal domain HMPREF0409_RS03075 PF02874 ATP synthase alpha/beta family, beta-barrel domain HMPREF0409_RS03080 PF00213 ATP synthase delta (OSCP) subunit HMPREF0409_RS03085 PF00430 ATP synthase B/B' CF(0) HMPREF0409_RS03090 PF00137 ATP synthase subunit C HMPREF0409_RS03095 PF00119 ATP synthase A chain HMPREF0409_RS03105 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HMPREF0409_RS03105 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HMPREF0409_RS03105 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HMPREF0409_RS03105 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HMPREF0409_RS03115 PF10397 Adenylosuccinate lyase C-terminus HMPREF0409_RS03115 PF00206 Lyase HMPREF0409_RS03120 PF00583 Acetyltransferase (GNAT) family HMPREF0409_RS03125 PF10502 Signal peptidase, peptidase S26 HMPREF0409_RS03130 PF01368 DHH family HMPREF0409_RS03130 PF02272 DHHA1 domain HMPREF0409_RS03130 PF10141 Single-strand DNA-specific exonuclease, C terminal domain HMPREF0409_RS03130 PF17768 RecJ OB domain HMPREF0409_RS03140 PF00005 ABC transporter HMPREF0409_RS03140 PF08402 TOBE domain HMPREF0409_RS03145 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS03150 PF16363 GDP-mannose 4,6 dehydratase HMPREF0409_RS03170 PF13439 Glycosyltransferase Family 4 HMPREF0409_RS03170 PF00534 Glycosyl transferases group 1 HMPREF0409_RS03185 PF03537 Glycoside-hydrolase family GH114 HMPREF0409_RS03195 PF04072 Leucine carboxyl methyltransferase HMPREF0409_RS03205 PF01381 Helix-turn-helix HMPREF0409_RS03285 PF04542 Sigma-70 region 2 HMPREF0409_RS03315 PF04466 Phage terminase large subunit HMPREF0409_RS03315 PF17288 Terminase RNAseH like domain HMPREF0409_RS03465 PF01522 Polysaccharide deacetylase HMPREF0409_RS03480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HMPREF0409_RS03485 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS03490 PF12911 N-terminal TM domain of oligopeptide transport permease C HMPREF0409_RS03490 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS03495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HMPREF0409_RS03495 PF00005 ABC transporter HMPREF0409_RS03500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HMPREF0409_RS03500 PF00005 ABC transporter HMPREF0409_RS03505 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system HMPREF0409_RS03535 PF11741 AMIN domain HMPREF0409_RS03535 PF01520 N-acetylmuramoyl-L-alanine amidase HMPREF0409_RS03545 PF00472 RF-1 domain HMPREF0409_RS03545 PF03462 PCRF domain HMPREF0409_RS03550 PF17827 PrmC N-terminal domain HMPREF0409_RS03550 PF05175 Methyltransferase small domain HMPREF0409_RS03555 PF02547 Queuosine biosynthesis protein HMPREF0409_RS03565 PF02609 Exonuclease VII small subunit HMPREF0409_RS03570 PF00348 Polyprenyl synthetase HMPREF0409_RS03575 PF01255 Putative undecaprenyl diphosphate synthase HMPREF0409_RS03585 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HMPREF0409_RS03585 PF13288 DXP reductoisomerase C-terminal domain HMPREF0409_RS03585 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HMPREF0409_RS03595 PF02163 Peptidase family M50 HMPREF0409_RS03595 PF00595 PDZ domain HMPREF0409_RS03600 PF00158 Sigma-54 interaction domain HMPREF0409_RS03600 PF02954 Bacterial regulatory protein, Fis family HMPREF0409_RS03600 PF00072 Response regulator receiver domain HMPREF0409_RS03610 PF01807 CHC2 zinc finger HMPREF0409_RS03610 PF08275 DNA primase catalytic core, N-terminal domain HMPREF0409_RS03610 PF10410 DnaB-helicase binding domain of primase HMPREF0409_RS03615 PF04545 Sigma-70, region 4 HMPREF0409_RS03615 PF04539 Sigma-70 region 3 HMPREF0409_RS03615 PF03979 Sigma-70 factor, region 1.1 HMPREF0409_RS03615 PF04542 Sigma-70 region 2 HMPREF0409_RS03615 PF00140 Sigma-70 factor, region 1.2 HMPREF0409_RS03625 PF01784 NIF3 (NGG1p interacting factor 3) HMPREF0409_RS03635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HMPREF0409_RS03640 PF01618 MotA/TolQ/ExbB proton channel family HMPREF0409_RS03645 PF02472 Biopolymer transport protein ExbD/TolR HMPREF0409_RS03665 PF01066 CDP-alcohol phosphatidyltransferase HMPREF0409_RS03670 PF12146 Serine aminopeptidase, S33 HMPREF0409_RS03670 PF12147 Putative methyltransferase HMPREF0409_RS03680 PF00436 Single-strand binding protein family HMPREF0409_RS03685 PF01923 Cobalamin adenosyltransferase HMPREF0409_RS03695 PF00005 ABC transporter HMPREF0409_RS03695 PF12848 ABC transporter HMPREF0409_RS03710 PF00557 Metallopeptidase family M24 HMPREF0409_RS03755 PF01176 Translation initiation factor 1A / IF-1 HMPREF0409_RS03760 PF00444 Ribosomal protein L36 HMPREF0409_RS03765 PF00416 Ribosomal protein S13/S18 HMPREF0409_RS03770 PF00411 Ribosomal protein S11 HMPREF0409_RS03775 PF01479 S4 domain HMPREF0409_RS03775 PF00163 Ribosomal protein S4/S9 N-terminal domain HMPREF0409_RS03780 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HMPREF0409_RS03780 PF01000 RNA polymerase Rpb3/RpoA insert domain HMPREF0409_RS03780 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HMPREF0409_RS03785 PF01196 Ribosomal protein L17 HMPREF0409_RS03815 PF12437 Glutamine synthetase type III N terminal HMPREF0409_RS03815 PF18318 Glutamine synthetase C-terminal domain HMPREF0409_RS03815 PF00120 Glutamine synthetase, catalytic domain HMPREF0409_RS03820 PF07687 Peptidase dimerisation domain HMPREF0409_RS03820 PF01546 Peptidase family M20/M25/M40 HMPREF0409_RS03835 PF00873 AcrB/AcrD/AcrF family HMPREF0409_RS03855 PF01343 Peptidase family S49 HMPREF0409_RS03860 PF02575 YbaB/EbfC DNA-binding family HMPREF0409_RS03870 PF09334 tRNA synthetases class I (M) HMPREF0409_RS03870 PF00133 tRNA synthetases class I (I, L, M and V) HMPREF0409_RS03870 PF01588 Putative tRNA binding domain HMPREF0409_RS03870 PF08264 Anticodon-binding domain of tRNA HMPREF0409_RS03880 PF00483 Nucleotidyl transferase HMPREF0409_RS03885 PF13488 Glycine zipper HMPREF0409_RS03885 PF00691 OmpA family HMPREF0409_RS03895 PF06180 Cobalt chelatase (CbiK) HMPREF0409_RS03905 PF00535 Glycosyl transferase family 2 HMPREF0409_RS03910 PF00072 Response regulator receiver domain HMPREF0409_RS03910 PF00486 Transcriptional regulatory protein, C terminal HMPREF0409_RS03915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMPREF0409_RS03915 PF00512 His Kinase A (phospho-acceptor) domain HMPREF0409_RS03915 PF00672 HAMP domain HMPREF0409_RS03920 PF03167 Uracil DNA glycosylase superfamily HMPREF0409_RS03925 PF03480 Bacterial extracellular solute-binding protein, family 7 HMPREF0409_RS03935 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HMPREF0409_RS03945 PF13344 Haloacid dehalogenase-like hydrolase HMPREF0409_RS03960 PF10634 Fe2+ transport protein HMPREF0409_RS03965 PF03239 Iron permease FTR1 family HMPREF0409_RS03970 PF00860 Permease family HMPREF0409_RS03980 PF04991 LicD family HMPREF0409_RS03985 PF00266 Aminotransferase class-V HMPREF0409_RS03990 PF00483 Nucleotidyl transferase HMPREF0409_RS04000 PF01522 Polysaccharide deacetylase HMPREF0409_RS04005 PF00535 Glycosyl transferase family 2 HMPREF0409_RS04005 PF02709 N-terminal domain of galactosyltransferase HMPREF0409_RS04020 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) HMPREF0409_RS04045 PF02384 N-6 DNA Methylase HMPREF0409_RS04055 PF00571 CBS domain HMPREF0409_RS04055 PF00478 IMP dehydrogenase / GMP reductase domain HMPREF0409_RS04075 PF03167 Uracil DNA glycosylase superfamily HMPREF0409_RS04080 PF02875 Mur ligase family, glutamate ligase domain HMPREF0409_RS04080 PF08245 Mur ligase middle domain HMPREF0409_RS04080 PF01225 Mur ligase family, catalytic domain HMPREF0409_RS04085 PF00793 DAHP synthetase I family HMPREF0409_RS04090 PF00390 Malic enzyme, N-terminal domain HMPREF0409_RS04090 PF03949 Malic enzyme, NAD binding domain HMPREF0409_RS04110 PF00291 Pyridoxal-phosphate dependent enzyme HMPREF0409_RS04120 PF04286 Protein of unknown function (DUF445) HMPREF0409_RS04125 PF17864 RuvB AAA lid domain HMPREF0409_RS04125 PF05491 RuvB C-terminal winged helix domain HMPREF0409_RS04125 PF05496 Holliday junction DNA helicase RuvB P-loop domain HMPREF0409_RS04130 PF02082 Transcriptional regulator HMPREF0409_RS04135 PF04452 RNA methyltransferase HMPREF0409_RS04140 PF00919 Uncharacterized protein family UPF0004 HMPREF0409_RS04140 PF01938 TRAM domain HMPREF0409_RS04140 PF04055 Radical SAM superfamily HMPREF0409_RS04155 PF00905 Penicillin binding protein transpeptidase domain HMPREF0409_RS04155 PF03717 Penicillin-binding Protein dimerisation domain HMPREF0409_RS04160 PF00753 Metallo-beta-lactamase superfamily HMPREF0409_RS04160 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HMPREF0409_RS04160 PF17770 Ribonuclease J C-terminal domain HMPREF0409_RS04165 PF01985 CRS1 / YhbY (CRM) domain HMPREF0409_RS04170 PF02780 Transketolase, C-terminal domain HMPREF0409_RS04170 PF02779 Transketolase, pyrimidine binding domain HMPREF0409_RS04170 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HMPREF0409_RS04180 PF01479 S4 domain HMPREF0409_RS04180 PF01728 FtsJ-like methyltransferase HMPREF0409_RS04185 PF01471 Putative peptidoglycan binding domain HMPREF0409_RS04185 PF03572 Peptidase family S41 HMPREF0409_RS04185 PF17820 PDZ domain HMPREF0409_RS04190 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HMPREF0409_RS04195 PF01926 50S ribosome-binding GTPase HMPREF0409_RS04200 PF02540 NAD synthase HMPREF0409_RS04210 PF11799 impB/mucB/samB family C-terminal domain HMPREF0409_RS04210 PF00817 impB/mucB/samB family HMPREF0409_RS04250 PF00474 Sodium:solute symporter family HMPREF0409_RS04285 PF01207 Dihydrouridine synthase (Dus) HMPREF0409_RS04290 PF00488 MutS domain V HMPREF0409_RS04290 PF05190 MutS family domain IV HMPREF0409_RS04290 PF05192 MutS domain III HMPREF0409_RS04290 PF05188 MutS domain II HMPREF0409_RS04290 PF01624 MutS domain I HMPREF0409_RS04300 PF00005 ABC transporter HMPREF0409_RS04305 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HMPREF0409_RS04305 PF01411 tRNA synthetases class II (A) HMPREF0409_RS04305 PF02272 DHHA1 domain HMPREF0409_RS04310 PF03652 Holliday junction resolvase HMPREF0409_RS04315 PF07549 SecD/SecF GG Motif HMPREF0409_RS04315 PF02355 Protein export membrane protein HMPREF0409_RS04320 PF02355 Protein export membrane protein HMPREF0409_RS04320 PF07549 SecD/SecF GG Motif HMPREF0409_RS04325 PF13847 Methyltransferase domain HMPREF0409_RS04325 PF10119 Predicted methyltransferase regulatory domain HMPREF0409_RS04330 PF07687 Peptidase dimerisation domain HMPREF0409_RS04330 PF01546 Peptidase family M20/M25/M40 HMPREF0409_RS04340 PF01367 5'-3' exonuclease, C-terminal SAM fold HMPREF0409_RS04340 PF00476 DNA polymerase family A HMPREF0409_RS04340 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HMPREF0409_RS04350 PF06574 FAD synthetase HMPREF0409_RS04350 PF01687 Riboflavin kinase HMPREF0409_RS04355 PF02616 Segregation and condensation protein ScpA HMPREF0409_RS04360 PF03023 Lipid II flippase MurJ HMPREF0409_RS04370 PF04127 DNA / pantothenate metabolism flavoprotein HMPREF0409_RS04370 PF02441 Flavoprotein HMPREF0409_RS04385 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HMPREF0409_RS04400 PF00849 RNA pseudouridylate synthase HMPREF0409_RS04400 PF01479 S4 domain HMPREF0409_RS04415 PF08207 Elongation factor P (EF-P) KOW-like domain HMPREF0409_RS04415 PF01132 Elongation factor P (EF-P) OB domain HMPREF0409_RS04415 PF09285 Elongation factor P, C-terminal HMPREF0409_RS04425 PF00258 Flavodoxin HMPREF0409_RS04430 PF00899 ThiF family HMPREF0409_RS04440 PF02661 Fic/DOC family HMPREF0409_RS04440 PF12728 Helix-turn-helix domain HMPREF0409_RS04445 PF00300 Histidine phosphatase superfamily (branch 1) HMPREF0409_RS04455 PF05636 HIGH Nucleotidyl Transferase HMPREF0409_RS04460 PF07687 Peptidase dimerisation domain HMPREF0409_RS04460 PF01546 Peptidase family M20/M25/M40 HMPREF0409_RS04465 PF08497 Radical SAM N-terminal HMPREF0409_RS04465 PF04055 Radical SAM superfamily HMPREF0409_RS04480 PF03447 Homoserine dehydrogenase, NAD binding domain HMPREF0409_RS04480 PF01842 ACT domain HMPREF0409_RS04480 PF00742 Homoserine dehydrogenase HMPREF0409_RS04495 PF04961 Formiminotransferase-cyclodeaminase HMPREF0409_RS04505 PF01979 Amidohydrolase family HMPREF0409_RS04510 PF07837 Formiminotransferase domain, N-terminal subdomain HMPREF0409_RS04510 PF02971 Formiminotransferase domain HMPREF0409_RS04515 PF07308 Protein of unknown function (DUF1456) HMPREF0409_RS04520 PF13307 Helicase C-terminal domain HMPREF0409_RS04520 PF06733 DEAD_2 HMPREF0409_RS04525 PF07698 7TM receptor with intracellular HD hydrolase HMPREF0409_RS04525 PF07697 7TM-HD extracellular HMPREF0409_RS04525 PF01966 HD domain HMPREF0409_RS04530 PF02130 Uncharacterized protein family UPF0054 HMPREF0409_RS04535 PF00293 NUDIX domain HMPREF0409_RS04555 PF17763 Glutaminase/Asparaginase C-terminal domain HMPREF0409_RS04555 PF00710 Asparaginase, N-terminal HMPREF0409_RS04560 PF00561 alpha/beta hydrolase fold HMPREF0409_RS04565 PF02934 GatB/GatE catalytic domain HMPREF0409_RS04565 PF02637 GatB domain HMPREF0409_RS04570 PF01425 Amidase HMPREF0409_RS04575 PF02686 Glu-tRNAGln amidotransferase C subunit HMPREF0409_RS04580 PF01479 S4 domain HMPREF0409_RS04580 PF00849 RNA pseudouridylate synthase HMPREF0409_RS04585 PF04079 Segregation and condensation complex subunit ScpB HMPREF0409_RS04595 PF02545 Maf-like protein HMPREF0409_RS04605 PF03309 Type III pantothenate kinase HMPREF0409_RS04625 PF01741 Large-conductance mechanosensitive channel, MscL HMPREF0409_RS04630 PF01497 Periplasmic binding protein HMPREF0409_RS04635 PF00593 TonB dependent receptor HMPREF0409_RS04635 PF07715 TonB-dependent Receptor Plug Domain HMPREF0409_RS04640 PF01032 FecCD transport family HMPREF0409_RS04645 PF00005 ABC transporter HMPREF0409_RS04650 PF04055 Radical SAM superfamily HMPREF0409_RS04650 PF06969 HemN C-terminal domain HMPREF0409_RS04665 PF02127 Aminopeptidase I zinc metalloprotease (M18) HMPREF0409_RS04670 PF03590 Aspartate-ammonia ligase HMPREF0409_RS04675 PF00679 Elongation factor G C-terminus HMPREF0409_RS04675 PF00009 Elongation factor Tu GTP binding domain HMPREF0409_RS04675 PF03144 Elongation factor Tu domain 2 HMPREF0409_RS04675 PF06421 GTP-binding protein LepA C-terminus HMPREF0409_RS04685 PF07683 Cobalamin synthesis protein cobW C-terminal domain HMPREF0409_RS04685 PF02492 CobW/HypB/UreG, nucleotide-binding domain HMPREF0409_RS04695 PF06738 Putative threonine/serine exporter HMPREF0409_RS04700 PF05175 Methyltransferase small domain HMPREF0409_RS04705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HMPREF0409_RS04705 PF02770 Acyl-CoA dehydrogenase, middle domain HMPREF0409_RS04705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HMPREF0409_RS04710 PF01012 Electron transfer flavoprotein domain HMPREF0409_RS04715 PF01012 Electron transfer flavoprotein domain HMPREF0409_RS04715 PF00766 Electron transfer flavoprotein FAD-binding domain HMPREF0409_RS04725 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 HMPREF0409_RS04725 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) HMPREF0409_RS04730 PF00480 ROK family HMPREF0409_RS04730 PF01325 Iron dependent repressor, N-terminal DNA binding domain HMPREF0409_RS04735 PF00221 Aromatic amino acid lyase HMPREF0409_RS04740 PF01175 Urocanase Rossmann-like domain HMPREF0409_RS04740 PF17392 Urocanase C-terminal domain HMPREF0409_RS04740 PF17391 Urocanase N-terminal domain HMPREF0409_RS04745 PF03616 Sodium/glutamate symporter HMPREF0409_RS04755 PF00571 CBS domain HMPREF0409_RS04755 PF08279 HTH domain HMPREF0409_RS04760 PF00391 PEP-utilising enzyme, mobile domain HMPREF0409_RS04760 PF02896 PEP-utilising enzyme, TIM barrel domain HMPREF0409_RS04760 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HMPREF0409_RS04770 PF06874 Firmicute fructose-1,6-bisphosphatase HMPREF0409_RS04795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HMPREF0409_RS04800 PF06250 YhcG PDDEXK nuclease domain HMPREF0409_RS04800 PF17761 DUF1016 N-terminal domain HMPREF0409_RS04860 PF01638 HxlR-like helix-turn-helix HMPREF0409_RS04870 PF17783 CvfB-like winged helix domain HMPREF0409_RS04870 PF13509 S1 domain HMPREF0409_RS04885 PF05437 Branched-chain amino acid transport protein (AzlD) HMPREF0409_RS04890 PF03591 AzlC protein HMPREF0409_RS04915 PF10672 S-adenosylmethionine-dependent methyltransferase HMPREF0409_RS04915 PF17785 PUA-like domain HMPREF0409_RS04935 PF00675 Insulinase (Peptidase family M16) HMPREF0409_RS04935 PF05193 Peptidase M16 inactive domain HMPREF0409_RS04940 PF00692 dUTPase HMPREF0409_RS04945 PF01098 Cell cycle protein HMPREF0409_RS04950 PF00849 RNA pseudouridylate synthase HMPREF0409_RS04950 PF01479 S4 domain HMPREF0409_RS04955 PF00860 Permease family HMPREF0409_RS04960 PF00216 Bacterial DNA-binding protein HMPREF0409_RS04965 PF00690 Cation transporter/ATPase, N-terminus HMPREF0409_RS04965 PF00689 Cation transporting ATPase, C-terminus HMPREF0409_RS04970 PF00378 Enoyl-CoA hydratase/isomerase HMPREF0409_RS04975 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HMPREF0409_RS04975 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HMPREF0409_RS04990 PF01048 Phosphorylase superfamily HMPREF0409_RS04995 PF02875 Mur ligase family, glutamate ligase domain HMPREF0409_RS04995 PF08245 Mur ligase middle domain HMPREF0409_RS05005 PF07475 HPr Serine kinase C-terminal domain HMPREF0409_RS05005 PF02603 HPr Serine kinase N terminus HMPREF0409_RS05010 PF01368 DHH family HMPREF0409_RS05010 PF02272 DHHA1 domain HMPREF0409_RS05015 PF04472 Cell division protein SepF HMPREF0409_RS05020 PF07282 Putative transposase DNA-binding domain HMPREF0409_RS05020 PF01385 Probable transposase HMPREF0409_RS05020 PF12323 Helix-turn-helix domain HMPREF0409_RS05050 PF13520 Amino acid permease HMPREF0409_RS05055 PF00282 Pyridoxal-dependent decarboxylase conserved domain HMPREF0409_RS05070 PF00202 Aminotransferase class-III HMPREF0409_RS05080 PF06968 Biotin and Thiamin Synthesis associated domain HMPREF0409_RS05080 PF04055 Radical SAM superfamily HMPREF0409_RS05085 PF05343 M42 glutamyl aminopeptidase HMPREF0409_RS05090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HMPREF0409_RS05100 PF09529 Integral membrane protein (intg_mem_TP0381) HMPREF0409_RS05105 PF02386 Cation transport protein HMPREF0409_RS05115 PF01066 CDP-alcohol phosphatidyltransferase HMPREF0409_RS05120 PF00586 AIR synthase related protein, N-terminal domain HMPREF0409_RS05120 PF02769 AIR synthase related protein, C-terminal domain HMPREF0409_RS05120 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HMPREF0409_RS05125 PF00731 AIR carboxylase HMPREF0409_RS05130 PF01259 SAICAR synthetase HMPREF0409_RS05135 PF00156 Phosphoribosyl transferase domain HMPREF0409_RS05140 PF02769 AIR synthase related protein, C-terminal domain HMPREF0409_RS05140 PF00586 AIR synthase related protein, N-terminal domain HMPREF0409_RS05145 PF00551 Formyl transferase HMPREF0409_RS05155 PF01808 AICARFT/IMPCHase bienzyme HMPREF0409_RS05155 PF02142 MGS-like domain HMPREF0409_RS05165 PF02843 Phosphoribosylglycinamide synthetase, C domain HMPREF0409_RS05165 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HMPREF0409_RS05165 PF02844 Phosphoribosylglycinamide synthetase, N domain HMPREF0409_RS05180 PF03553 Na+/H+ antiporter family HMPREF0409_RS05185 PF05658 Head domain of trimeric autotransporter adhesin HMPREF0409_RS05185 PF13018 Extended Signal Peptide of Type V secretion system HMPREF0409_RS05185 PF05662 Coiled stalk of trimeric autotransporter adhesin HMPREF0409_RS05185 PF03895 YadA-like membrane anchor domain HMPREF0409_RS05190 PF07685 CobB/CobQ-like glutamine amidotransferase domain HMPREF0409_RS05200 PF03186 CobD/Cbib protein HMPREF0409_RS05210 PF00155 Aminotransferase class I and II HMPREF0409_RS05215 PF07685 CobB/CobQ-like glutamine amidotransferase domain HMPREF0409_RS05220 PF12728 Helix-turn-helix domain HMPREF0409_RS05220 PF02661 Fic/DOC family HMPREF0409_RS05225 PF02570 Precorrin-8X methylmutase HMPREF0409_RS05245 PF01888 CbiD HMPREF0409_RS05255 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HMPREF0409_RS05255 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HMPREF0409_RS05260 PF05175 Methyltransferase small domain HMPREF0409_RS05265 PF13173 AAA domain HMPREF0409_RS05265 PF13635 Domain of unknown function (DUF4143) HMPREF0409_RS05285 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HMPREF0409_RS05295 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HMPREF0409_RS05300 PF00270 DEAD/DEAH box helicase HMPREF0409_RS05300 PF17191 RecG wedge domain HMPREF0409_RS05300 PF13749 Putative ATP-dependent DNA helicase recG C-terminal HMPREF0409_RS05335 PF11761 Cobalamin biosynthesis central region HMPREF0409_RS05335 PF01890 Cobalamin synthesis G C-terminus HMPREF0409_RS05335 PF11760 Cobalamin synthesis G N-terminal HMPREF0409_RS05340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HMPREF0409_RS05340 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HMPREF0409_RS05345 PF02571 Precorrin-6x reductase CbiJ/CobK HMPREF0409_RS05350 PF13086 AAA domain HMPREF0409_RS05350 PF13087 AAA domain HMPREF0409_RS05350 PF13195 Protein of unknown function (DUF4011) HMPREF0409_RS05375 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HMPREF0409_RS05375 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HMPREF0409_RS05375 PF13187 4Fe-4S dicluster domain HMPREF0409_RS05380 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B HMPREF0409_RS05380 PF00175 Oxidoreductase NAD-binding domain HMPREF0409_RS05385 PF17179 4Fe-4S dicluster domain HMPREF0409_RS05395 PF01554 MatE HMPREF0409_RS05400 PF01264 Chorismate synthase HMPREF0409_RS05405 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HMPREF0409_RS05415 PF00293 NUDIX domain HMPREF0409_RS05420 PF00294 pfkB family carbohydrate kinase HMPREF0409_RS05420 PF01467 Cytidylyltransferase-like HMPREF0409_RS05425 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HMPREF0409_RS05430 PF00814 Glycoprotease family HMPREF0409_RS05460 PF13091 PLD-like domain HMPREF0409_RS05460 PF13396 Phospholipase_D-nuclease N-terminal HMPREF0409_RS05465 PF01636 Phosphotransferase enzyme family HMPREF0409_RS05475 PF01435 Peptidase family M48 HMPREF0409_RS05485 PF05860 haemagglutination activity domain HMPREF0409_RS05485 PF05594 Haemagluttinin repeat HMPREF0409_RS05485 PF05594 Haemagluttinin repeat HMPREF0409_RS05485 PF13332 Hemagglutinin repeat HMPREF0409_RS05485 PF05860 haemagglutination activity domain HMPREF0409_RS05485 PF15526 Novel toxin 21 HMPREF0409_RS05485 PF04829 Pre-toxin domain with VENN motif HMPREF0409_RS05485 PF13332 Hemagglutinin repeat HMPREF0409_RS05485 PF15526 Novel toxin 21 HMPREF0409_RS05485 PF04829 Pre-toxin domain with VENN motif HMPREF0409_RS05570 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HMPREF0409_RS05580 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HMPREF0409_RS05585 PF02654 Cobalamin-5-phosphate synthase HMPREF0409_RS05590 PF00300 Histidine phosphatase superfamily (branch 1) HMPREF0409_RS05595 PF02277 Phosphoribosyltransferase HMPREF0409_RS05600 PF04002 RadC-like JAB domain HMPREF0409_RS05605 PF04468 PSP1 C-terminal conserved region HMPREF0409_RS05610 PF17827 PrmC N-terminal domain HMPREF0409_RS05610 PF13847 Methyltransferase domain HMPREF0409_RS05615 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HMPREF0409_RS05615 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HMPREF0409_RS05635 PF00571 CBS domain HMPREF0409_RS05635 PF01380 SIS domain HMPREF0409_RS05640 PF01812 5-formyltetrahydrofolate cyclo-ligase family HMPREF0409_RS05650 PF00753 Metallo-beta-lactamase superfamily HMPREF0409_RS05655 PF00106 short chain dehydrogenase HMPREF0409_RS05680 PF08241 Methyltransferase domain HMPREF0409_RS05690 PF00155 Aminotransferase class I and II HMPREF0409_RS05720 PF00589 Phage integrase family HMPREF0409_RS05720 PF02899 Phage integrase, N-terminal SAM-like domain HMPREF0409_RS05755 PF01177 Asp/Glu/Hydantoin racemase HMPREF0409_RS05770 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HMPREF0409_RS05780 PF01327 Polypeptide deformylase HMPREF0409_RS05785 PF04851 Type III restriction enzyme, res subunit HMPREF0409_RS05785 PF18074 Primosomal protein N C-terminal domain HMPREF0409_RS05785 PF17764 3′ DNA-binding domain (3′BD) HMPREF0409_RS05785 PF00271 Helicase conserved C-terminal domain HMPREF0409_RS05785 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HMPREF0409_RS05790 PF03793 PASTA domain HMPREF0409_RS05790 PF03717 Penicillin-binding Protein dimerisation domain HMPREF0409_RS05790 PF00905 Penicillin binding protein transpeptidase domain HMPREF0409_RS05795 PF03631 Virulence factor BrkB HMPREF0409_RS05805 PF00155 Aminotransferase class I and II HMPREF0409_RS05815 PF00580 UvrD/REP helicase N-terminal domain HMPREF0409_RS05815 PF13361 UvrD-like helicase C-terminal domain HMPREF0409_RS05815 PF12705 PD-(D/E)XK nuclease superfamily HMPREF0409_RS05820 PF08323 Starch synthase catalytic domain HMPREF0409_RS05820 PF00534 Glycosyl transferases group 1 HMPREF0409_RS05825 PF00483 Nucleotidyl transferase HMPREF0409_RS05830 PF00483 Nucleotidyl transferase HMPREF0409_RS05830 PF00132 Bacterial transferase hexapeptide (six repeats) HMPREF0409_RS05835 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HMPREF0409_RS05835 PF00128 Alpha amylase, catalytic domain HMPREF0409_RS05835 PF02806 Alpha amylase, C-terminal all-beta domain HMPREF0409_RS05840 PF00343 Carbohydrate phosphorylase HMPREF0409_RS05845 PF02446 4-alpha-glucanotransferase HMPREF0409_RS05870 PF01027 Inhibitor of apoptosis-promoting Bax1 HMPREF0409_RS05875 PF00501 AMP-binding enzyme HMPREF0409_RS05875 PF13193 AMP-binding enzyme C-terminal domain HMPREF0409_RS05880 PF01171 PP-loop family HMPREF0409_RS05895 PF02541 Ppx/GppA phosphatase family HMPREF0409_RS05895 PF01761 3-dehydroquinate synthase HMPREF0409_RS05905 PF01343 Peptidase family S49 HMPREF0409_RS05910 PF00293 NUDIX domain HMPREF0409_RS05915 PF08032 RNA 2'-O ribose methyltransferase substrate binding HMPREF0409_RS05915 PF00588 SpoU rRNA Methylase family HMPREF0409_RS05935 PF00005 ABC transporter HMPREF0409_RS05945 PF17755 UvrA DNA-binding domain HMPREF0409_RS05945 PF00005 ABC transporter HMPREF0409_RS05945 PF17760 UvrA interaction domain HMPREF0409_RS05950 PF08439 Oligopeptidase F HMPREF0409_RS05950 PF01432 Peptidase family M3 HMPREF0409_RS05955 PF02664 S-Ribosylhomocysteinase (LuxS) HMPREF0409_RS05960 PF00860 Permease family HMPREF0409_RS05995 PF03313 Serine dehydratase alpha chain HMPREF0409_RS06000 PF01680 SOR/SNZ family HMPREF0409_RS06005 PF00155 Aminotransferase class I and II HMPREF0409_RS06005 PF00392 Bacterial regulatory proteins, gntR family HMPREF0409_RS06015 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HMPREF0409_RS06020 PF04055 Radical SAM superfamily HMPREF0409_RS06020 PF16199 Radical_SAM C-terminal domain HMPREF0409_RS06025 PF01226 Formate/nitrite transporter HMPREF0409_RS06030 PF12323 Helix-turn-helix domain HMPREF0409_RS06030 PF07282 Putative transposase DNA-binding domain HMPREF0409_RS06030 PF01385 Probable transposase HMPREF0409_RS06040 PF01966 HD domain HMPREF0409_RS06045 PF17876 Cold shock domain HMPREF0409_RS06045 PF08206 Ribonuclease B OB domain HMPREF0409_RS06045 PF00773 RNB domain HMPREF0409_RS06045 PF00575 S1 RNA binding domain HMPREF0409_RS06050 PF01668 SmpB protein HMPREF0409_RS06070 PF08021 Siderophore-interacting FAD-binding domain HMPREF0409_RS06070 PF00005 ABC transporter HMPREF0409_RS06070 PF04954 Siderophore-interacting protein HMPREF0409_RS06070 PF00664 ABC transporter transmembrane region HMPREF0409_RS06075 PF00005 ABC transporter HMPREF0409_RS06075 PF00664 ABC transporter transmembrane region HMPREF0409_RS06090 PF13416 Bacterial extracellular solute-binding protein HMPREF0409_RS06095 PF00924 Mechanosensitive ion channel HMPREF0409_RS06095 PF05552 Conserved TM helix HMPREF0409_RS06100 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain HMPREF0409_RS06100 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain HMPREF0409_RS06120 PF03553 Na+/H+ antiporter family HMPREF0409_RS06125 PF00155 Aminotransferase class I and II HMPREF0409_RS06130 PF03144 Elongation factor Tu domain 2 HMPREF0409_RS06130 PF00679 Elongation factor G C-terminus HMPREF0409_RS06130 PF00009 Elongation factor Tu GTP binding domain HMPREF0409_RS06135 PF01509 TruB family pseudouridylate synthase (N terminal domain) HMPREF0409_RS06135 PF16198 tRNA pseudouridylate synthase B C-terminal domain HMPREF0409_RS06175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HMPREF0409_RS06175 PF02602 Uroporphyrinogen-III synthase HemD HMPREF0409_RS06180 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HMPREF0409_RS06180 PF03900 Porphobilinogen deaminase, C-terminal domain HMPREF0409_RS06185 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HMPREF0409_RS06185 PF01488 Shikimate / quinate 5-dehydrogenase HMPREF0409_RS06190 PF00849 RNA pseudouridylate synthase HMPREF0409_RS06195 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HMPREF0409_RS06195 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HMPREF0409_RS06200 PF00162 Phosphoglycerate kinase HMPREF0409_RS06220 PF03180 NLPA lipoprotein HMPREF0409_RS06225 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS06230 PF00005 ABC transporter HMPREF0409_RS06230 PF09383 NIL domain HMPREF0409_RS06240 PF00491 Arginase family HMPREF0409_RS06250 PF03060 Nitronate monooxygenase HMPREF0409_RS06255 PF01554 MatE HMPREF0409_RS06260 PF04552 Sigma-54, DNA binding domain HMPREF0409_RS06260 PF00309 Sigma-54 factor, Activator interacting domain (AID) HMPREF0409_RS06260 PF04963 Sigma-54 factor, core binding domain HMPREF0409_RS06265 PF00892 EamA-like transporter family HMPREF0409_RS06270 PF01297 Zinc-uptake complex component A periplasmic HMPREF0409_RS06275 PF00005 ABC transporter HMPREF0409_RS06280 PF00950 ABC 3 transport family HMPREF0409_RS06285 PF00950 ABC 3 transport family HMPREF0409_RS06295 PF13173 AAA domain HMPREF0409_RS06295 PF13635 Domain of unknown function (DUF4143) HMPREF0409_RS06300 PF04073 Aminoacyl-tRNA editing domain HMPREF0409_RS06310 PF00118 TCP-1/cpn60 chaperonin family HMPREF0409_RS06315 PF00166 Chaperonin 10 Kd subunit HMPREF0409_RS06335 PF01555 DNA methylase HMPREF0409_RS06340 PF04851 Type III restriction enzyme, res subunit HMPREF0409_RS06340 PF08774 VRR-NUC domain HMPREF0409_RS06360 PF00069 Protein kinase domain HMPREF0409_RS06360 PF03793 PASTA domain HMPREF0409_RS06365 PF16745 RsgA N-terminal domain HMPREF0409_RS06365 PF03193 RsgA GTPase HMPREF0409_RS06370 PF00834 Ribulose-phosphate 3 epimerase family HMPREF0409_RS06380 PF05670 NFACT protein RNA binding domain HMPREF0409_RS06385 PF00158 Sigma-54 interaction domain HMPREF0409_RS06390 PF03600 Citrate transporter HMPREF0409_RS06410 PF03063 Prismane/CO dehydrogenase family HMPREF0409_RS06415 PF00497 Bacterial extracellular solute-binding proteins, family 3 HMPREF0409_RS06425 PF02146 Sir2 family HMPREF0409_RS06430 PF01515 Phosphate acetyl/butaryl transferase HMPREF0409_RS06435 PF00871 Acetokinase family HMPREF0409_RS06440 PF10371 Domain of unknown function HMPREF0409_RS06440 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HMPREF0409_RS06440 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HMPREF0409_RS06440 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HMPREF0409_RS06440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HMPREF0409_RS06445 PF01293 Phosphoenolpyruvate carboxykinase HMPREF0409_RS06450 PF08903 Domain of unknown function (DUF1846) HMPREF0409_RS06455 PF00501 AMP-binding enzyme HMPREF0409_RS06460 PF00578 AhpC/TSA family HMPREF0409_RS06465 PF00223 Photosystem I psaA/psaB protein HMPREF0409_RS06465 PF00691 OmpA family HMPREF0409_RS06470 PF04011 LemA family HMPREF0409_RS06490 PF00326 Prolyl oligopeptidase family HMPREF0409_RS06490 PF07676 WD40-like Beta Propeller Repeat HMPREF0409_RS06495 PF02463 RecF/RecN/SMC N terminal domain HMPREF0409_RS06495 PF06470 SMC proteins Flexible Hinge Domain HMPREF0409_RS06500 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HMPREF0409_RS06510 PF01467 Cytidylyltransferase-like HMPREF0409_RS06515 PF00753 Metallo-beta-lactamase superfamily HMPREF0409_RS06520 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMPREF0409_RS06525 PF00480 ROK family HMPREF0409_RS06530 PF13407 Periplasmic binding protein domain HMPREF0409_RS06535 PF00005 ABC transporter HMPREF0409_RS06540 PF02653 Branched-chain amino acid transport system / permease component HMPREF0409_RS06550 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HMPREF0409_RS06550 PF00056 lactate/malate dehydrogenase, NAD binding domain HMPREF0409_RS06555 PF01016 Ribosomal L27 protein HMPREF0409_RS06565 PF00829 Ribosomal prokaryotic L21 protein HMPREF0409_RS06570 PF03575 Peptidase family S51 HMPREF0409_RS06575 PF03824 High-affinity nickel-transport protein HMPREF0409_RS06585 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS06590 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS06590 PF12911 N-terminal TM domain of oligopeptide transport permease C HMPREF0409_RS06595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HMPREF0409_RS06600 PF00005 ABC transporter HMPREF0409_RS06600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HMPREF0409_RS06605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HMPREF0409_RS06605 PF00005 ABC transporter HMPREF0409_RS06610 PF03313 Serine dehydratase alpha chain HMPREF0409_RS06610 PF03315 Serine dehydratase beta chain HMPREF0409_RS06620 PF07499 RuvA, C-terminal domain HMPREF0409_RS06620 PF01330 RuvA N terminal domain HMPREF0409_RS06625 PF17760 UvrA interaction domain HMPREF0409_RS06625 PF17755 UvrA DNA-binding domain HMPREF0409_RS06630 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family HMPREF0409_RS06650 PF07136 Protein of unknown function (DUF1385) HMPREF0409_RS06655 PF07228 Stage II sporulation protein E (SpoIIE) HMPREF0409_RS06655 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain HMPREF0409_RS06660 PF08459 UvrC Helix-hairpin-helix N-terminal HMPREF0409_RS06660 PF01541 GIY-YIG catalytic domain HMPREF0409_RS06660 PF02151 UvrB/uvrC motif HMPREF0409_RS06665 PF03668 P-loop ATPase protein family HMPREF0409_RS06670 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMPREF0409_RS06670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HMPREF0409_RS06710 PF00005 ABC transporter HMPREF0409_RS06710 PF00664 ABC transporter transmembrane region HMPREF0409_RS06740 PF02881 SRP54-type protein, helical bundle domain HMPREF0409_RS06740 PF00448 SRP54-type protein, GTPase domain HMPREF0409_RS06750 PF01926 50S ribosome-binding GTPase HMPREF0409_RS06755 PF00589 Phage integrase family HMPREF0409_RS06755 PF02899 Phage integrase, N-terminal SAM-like domain HMPREF0409_RS06760 PF01134 Glucose inhibited division protein A HMPREF0409_RS06765 PF01751 Toprim domain HMPREF0409_RS06765 PF01131 DNA topoisomerase HMPREF0409_RS06765 PF01396 Topoisomerase DNA binding C4 zinc finger HMPREF0409_RS06770 PF02481 DNA recombination-mediator protein A HMPREF0409_RS06770 PF17782 DprA winged helix domain HMPREF0409_RS06775 PF02601 Exonuclease VII, large subunit HMPREF0409_RS06775 PF13742 OB-fold nucleic acid binding domain HMPREF0409_RS06780 PF13742 OB-fold nucleic acid binding domain HMPREF0409_RS06780 PF02601 Exonuclease VII, large subunit HMPREF0409_RS06795 PF01546 Peptidase family M20/M25/M40 HMPREF0409_RS06795 PF07687 Peptidase dimerisation domain HMPREF0409_RS06800 PF12697 Alpha/beta hydrolase family HMPREF0409_RS06810 PF05406 WGR domain HMPREF0409_RS06815 PF05525 Branched-chain amino acid transport protein HMPREF0409_RS06830 PF00291 Pyridoxal-phosphate dependent enzyme HMPREF0409_RS06840 PF00291 Pyridoxal-phosphate dependent enzyme HMPREF0409_RS06845 PF05736 OprF membrane domain HMPREF0409_RS06845 PF00691 OmpA family HMPREF0409_RS06865 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HMPREF0409_RS06865 PF00128 Alpha amylase, catalytic domain HMPREF0409_RS06870 PF00497 Bacterial extracellular solute-binding proteins, family 3 HMPREF0409_RS06875 PF00005 ABC transporter HMPREF0409_RS06880 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS06885 PF01641 SelR domain HMPREF0409_RS06885 PF08534 Redoxin HMPREF0409_RS06885 PF01625 Peptide methionine sulfoxide reductase HMPREF0409_RS06890 PF02683 Cytochrome C biogenesis protein transmembrane region HMPREF0409_RS06895 PF01891 Cobalt uptake substrate-specific transmembrane region HMPREF0409_RS06900 PF02553 Cobalt transport protein component CbiN HMPREF0409_RS06910 PF00005 ABC transporter HMPREF0409_RS06920 PF08486 Stage II sporulation protein HMPREF0409_RS06925 PF02348 Cytidylyltransferase HMPREF0409_RS06930 PF00300 Histidine phosphatase superfamily (branch 1) HMPREF0409_RS06935 PF00588 SpoU rRNA Methylase family HMPREF0409_RS06940 PF01212 Beta-eliminating lyase HMPREF0409_RS06950 PF00216 Bacterial DNA-binding protein HMPREF0409_RS06960 PF01385 Probable transposase HMPREF0409_RS06960 PF12323 Helix-turn-helix domain HMPREF0409_RS06960 PF07282 Putative transposase DNA-binding domain HMPREF0409_RS06975 PF07670 Nucleoside recognition HMPREF0409_RS06975 PF02421 Ferrous iron transport protein B HMPREF0409_RS06975 PF17910 FeoB cytosolic helical domain HMPREF0409_RS06975 PF04023 FeoA domain HMPREF0409_RS06975 PF07664 Ferrous iron transport protein B C terminus HMPREF0409_RS06980 PF07670 Nucleoside recognition HMPREF0409_RS06980 PF17910 FeoB cytosolic helical domain HMPREF0409_RS06980 PF02421 Ferrous iron transport protein B HMPREF0409_RS06980 PF07664 Ferrous iron transport protein B C terminus HMPREF0409_RS06980 PF04023 FeoA domain HMPREF0409_RS06985 PF01554 MatE HMPREF0409_RS06990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HMPREF0409_RS06990 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMPREF0409_RS07000 PF01202 Shikimate kinase HMPREF0409_RS07005 PF13167 GTP-binding GTPase N-terminal HMPREF0409_RS07005 PF01926 50S ribosome-binding GTPase HMPREF0409_RS07005 PF16360 GTP-binding GTPase Middle Region HMPREF0409_RS07020 PF13533 Biotin-lipoyl like HMPREF0409_RS07025 PF00005 ABC transporter HMPREF0409_RS07030 PF00005 ABC transporter HMPREF0409_RS07030 PF02687 FtsX-like permease family HMPREF0409_RS07030 PF12704 MacB-like periplasmic core domain HMPREF0409_RS07035 PF01979 Amidohydrolase family HMPREF0409_RS07040 PF04074 YhcH/YjgK/YiaL HMPREF0409_RS07050 PF00005 ABC transporter HMPREF0409_RS07055 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS07065 PF01869 BadF/BadG/BcrA/BcrD ATPase family HMPREF0409_RS07090 PF00005 ABC transporter HMPREF0409_RS07090 PF00664 ABC transporter transmembrane region HMPREF0409_RS07095 PF02684 Lipid-A-disaccharide synthetase HMPREF0409_RS07105 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HMPREF0409_RS07105 PF00132 Bacterial transferase hexapeptide (six repeats) HMPREF0409_RS07110 PF07977 FabA-like domain HMPREF0409_RS07115 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HMPREF0409_RS07120 PF00580 UvrD/REP helicase N-terminal domain HMPREF0409_RS07120 PF13361 UvrD-like helicase C-terminal domain HMPREF0409_RS07125 PF01638 HxlR-like helix-turn-helix HMPREF0409_RS07135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMPREF0409_RS07135 PF00512 His Kinase A (phospho-acceptor) domain HMPREF0409_RS07135 PF18719 ArlS sensor domain HMPREF0409_RS07140 PF00486 Transcriptional regulatory protein, C terminal HMPREF0409_RS07140 PF00072 Response regulator receiver domain HMPREF0409_RS07150 PF00005 ABC transporter HMPREF0409_RS07155 PF02687 FtsX-like permease family HMPREF0409_RS07155 PF12704 MacB-like periplasmic core domain HMPREF0409_RS07160 PF00905 Penicillin binding protein transpeptidase domain HMPREF0409_RS07160 PF06832 Penicillin-Binding Protein C-terminus Family HMPREF0409_RS07160 PF00912 Transglycosylase HMPREF0409_RS07170 PF00270 DEAD/DEAH box helicase HMPREF0409_RS07170 PF09382 RQC domain HMPREF0409_RS07170 PF16124 RecQ zinc-binding HMPREF0409_RS07170 PF00570 HRDC domain HMPREF0409_RS07170 PF00271 Helicase conserved C-terminal domain HMPREF0409_RS07190 PF02481 DNA recombination-mediator protein A HMPREF0409_RS07190 PF17782 DprA winged helix domain HMPREF0409_RS07210 PF04472 Cell division protein SepF HMPREF0409_RS07215 PF01168 Alanine racemase, N-terminal domain HMPREF0409_RS07220 PF04055 Radical SAM superfamily HMPREF0409_RS07220 PF06969 HemN C-terminal domain HMPREF0409_RS07225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HMPREF0409_RS07225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HMPREF0409_RS07225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HMPREF0409_RS07225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HMPREF0409_RS07230 PF05818 Enterobacterial TraT complement resistance protein HMPREF0409_RS07255 PF02447 GntP family permease HMPREF0409_RS07260 PF00291 Pyridoxal-phosphate dependent enzyme HMPREF0409_RS07275 PF00814 Glycoprotease family HMPREF0409_RS07280 PF02631 RecX family HMPREF0409_RS07285 PF00154 recA bacterial DNA recombination protein HMPREF0409_RS07300 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HMPREF0409_RS07310 PF00535 Glycosyl transferase family 2 HMPREF0409_RS07315 PF01522 Polysaccharide deacetylase HMPREF0409_RS07320 PF00202 Aminotransferase class-III HMPREF0409_RS07325 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HMPREF0409_RS07325 PF14824 Sirohaem biosynthesis protein central HMPREF0409_RS07325 PF10414 Sirohaem synthase dimerisation region HMPREF0409_RS07335 PF02660 Glycerol-3-phosphate acyltransferase HMPREF0409_RS07340 PF02768 DNA polymerase III beta subunit, C-terminal domain HMPREF0409_RS07340 PF00712 DNA polymerase III beta subunit, N-terminal domain HMPREF0409_RS07345 PF03641 Possible lysine decarboxylase HMPREF0409_RS07355 PF03601 Conserved hypothetical protein 698 HMPREF0409_RS07365 PF00313 'Cold-shock' DNA-binding domain HMPREF0409_RS07370 PF01411 tRNA synthetases class II (A) HMPREF0409_RS07370 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HMPREF0409_RS07370 PF02272 DHHA1 domain HMPREF0409_RS07375 PF04055 Radical SAM superfamily HMPREF0409_RS07380 PF00905 Penicillin binding protein transpeptidase domain HMPREF0409_RS07380 PF00912 Transglycosylase HMPREF0409_RS07385 PF13361 UvrD-like helicase C-terminal domain HMPREF0409_RS07385 PF00580 UvrD/REP helicase N-terminal domain HMPREF0409_RS07395 PF02463 RecF/RecN/SMC N terminal domain HMPREF0409_RS07400 PF02677 Epoxyqueuosine reductase QueH HMPREF0409_RS07425 PF00873 AcrB/AcrD/AcrF family HMPREF0409_RS07430 PF00258 Flavodoxin HMPREF0409_RS07435 PF00753 Metallo-beta-lactamase superfamily HMPREF0409_RS07435 PF00258 Flavodoxin HMPREF0409_RS07440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HMPREF0409_RS07440 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HMPREF0409_RS07445 PF01734 Patatin-like phospholipase HMPREF0409_RS07455 PF00750 tRNA synthetases class I (R) HMPREF0409_RS07455 PF05746 DALR anticodon binding domain HMPREF0409_RS07455 PF03485 Arginyl tRNA synthetase N terminal domain HMPREF0409_RS07460 PF07722 Peptidase C26 HMPREF0409_RS07465 PF13520 Amino acid permease HMPREF0409_RS07470 PF03466 LysR substrate binding domain HMPREF0409_RS07470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HMPREF0409_RS07475 PF13580 SIS domain HMPREF0409_RS07480 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HMPREF0409_RS07480 PF01276 Orn/Lys/Arg decarboxylase, major domain HMPREF0409_RS07510 PF02803 Thiolase, C-terminal domain HMPREF0409_RS07510 PF00108 Thiolase, N-terminal domain HMPREF0409_RS07525 PF00842 Alanine racemase, C-terminal domain HMPREF0409_RS07525 PF01168 Alanine racemase, N-terminal domain HMPREF0409_RS07535 PF01790 Prolipoprotein diacylglyceryl transferase HMPREF0409_RS07540 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HMPREF0409_RS07540 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HMPREF0409_RS07545 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HMPREF0409_RS07545 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HMPREF0409_RS07560 PF01197 Ribosomal protein L31 HMPREF0409_RS07580 PF04551 GcpE protein HMPREF0409_RS07585 PF01551 Peptidase family M23 HMPREF0409_RS07585 PF04225 Opacity-associated protein A LysM-like domain HMPREF0409_RS07590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HMPREF0409_RS07590 PF07497 Rho termination factor, RNA-binding domain HMPREF0409_RS07595 PF04055 Radical SAM superfamily HMPREF0409_RS07595 PF00919 Uncharacterized protein family UPF0004 HMPREF0409_RS07595 PF01938 TRAM domain HMPREF0409_RS07600 PF00873 AcrB/AcrD/AcrF family HMPREF0409_RS07605 PF17932 Tetracyclin repressor-like, C-terminal domain HMPREF0409_RS07605 PF00440 Bacterial regulatory proteins, tetR family HMPREF0409_RS07610 PF00258 Flavodoxin HMPREF0409_RS07615 PF03895 YadA-like membrane anchor domain HMPREF0409_RS07615 PF05658 Head domain of trimeric autotransporter adhesin HMPREF0409_RS07615 PF05662 Coiled stalk of trimeric autotransporter adhesin HMPREF0409_RS07620 PF03806 AbgT putative transporter family HMPREF0409_RS07625 PF03932 CutC family HMPREF0409_RS07630 PF04172 LrgB-like family HMPREF0409_RS07635 PF03788 LrgA family HMPREF0409_RS07640 PF00152 tRNA synthetases class II (D, K and N) HMPREF0409_RS07640 PF01336 OB-fold nucleic acid binding domain HMPREF0409_RS07655 PF02590 Predicted SPOUT methyltransferase HMPREF0409_RS07660 PF08676 MutL C terminal dimerisation domain HMPREF0409_RS07660 PF01119 DNA mismatch repair protein, C-terminal domain HMPREF0409_RS07785 PF17287 POTRA domain HMPREF0409_RS07785 PF08479 POTRA domain, ShlB-type HMPREF0409_RS07785 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HMPREF0409_RS07790 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HMPREF0409_RS07790 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus HMPREF0409_RS07795 PF00490 Delta-aminolevulinic acid dehydratase HMPREF0409_RS07820 PF02915 Rubrerythrin HMPREF0409_RS07825 PF00171 Aldehyde dehydrogenase family HMPREF0409_RS07835 PF01321 Creatinase/Prolidase N-terminal domain HMPREF0409_RS07835 PF00557 Metallopeptidase family M24 HMPREF0409_RS07840 PF01380 SIS domain HMPREF0409_RS07845 PF13683 Integrase core domain HMPREF0409_RS07845 PF01610 Transposase HMPREF0409_RS07875 PF03746 LamB/YcsF family HMPREF0409_RS07880 PF01566 Natural resistance-associated macrophage protein HMPREF0409_RS07885 PF02682 Carboxyltransferase domain, subdomain C and D HMPREF0409_RS07895 PF01029 NusB family HMPREF0409_RS07895 PF01189 16S rRNA methyltransferase RsmB/F HMPREF0409_RS07910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HMPREF0409_RS07920 PF02321 Outer membrane efflux protein HMPREF0409_RS07935 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase HMPREF0409_RS07940 PF08218 Citrate lyase ligase C-terminal domain HMPREF0409_RS07960 PF00497 Bacterial extracellular solute-binding proteins, family 3 HMPREF0409_RS07965 PF00005 ABC transporter HMPREF0409_RS07970 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS07975 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS07980 PF01177 Asp/Glu/Hydantoin racemase HMPREF0409_RS07985 PF01926 50S ribosome-binding GTPase HMPREF0409_RS07985 PF07650 KH domain HMPREF0409_RS07990 PF02899 Phage integrase, N-terminal SAM-like domain HMPREF0409_RS07990 PF00589 Phage integrase family HMPREF0409_RS07995 PF02463 RecF/RecN/SMC N terminal domain HMPREF0409_RS08000 PF01513 ATP-NAD kinase HMPREF0409_RS08025 PF02901 Pyruvate formate lyase-like HMPREF0409_RS08025 PF01228 Glycine radical HMPREF0409_RS08030 PF04055 Radical SAM superfamily HMPREF0409_RS08035 PF00005 ABC transporter HMPREF0409_RS08040 PF00005 ABC transporter HMPREF0409_RS08040 PF12399 Branched-chain amino acid ATP-binding cassette transporter HMPREF0409_RS08045 PF11862 Domain of unknown function (DUF3382) HMPREF0409_RS08045 PF02653 Branched-chain amino acid transport system / permease component HMPREF0409_RS08050 PF02653 Branched-chain amino acid transport system / permease component HMPREF0409_RS08055 PF13458 Periplasmic binding protein HMPREF0409_RS08060 PF00106 short chain dehydrogenase HMPREF0409_RS08070 PF00830 Ribosomal L28 family HMPREF0409_RS08075 PF00294 pfkB family carbohydrate kinase HMPREF0409_RS08080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HMPREF0409_RS08080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HMPREF0409_RS08090 PF00958 GMP synthase C terminal domain HMPREF0409_RS08090 PF02540 NAD synthase HMPREF0409_RS08090 PF00117 Glutamine amidotransferase class-I HMPREF0409_RS08110 PF00176 SNF2 family N-terminal domain HMPREF0409_RS08110 PF00271 Helicase conserved C-terminal domain HMPREF0409_RS08115 PF00886 Ribosomal protein S16 HMPREF0409_RS08125 PF04297 Putative helix-turn-helix protein, YlxM / p13 like HMPREF0409_RS08145 PF04960 Glutaminase HMPREF0409_RS08150 PF01235 Sodium:alanine symporter family HMPREF0409_RS08160 PF03606 C4-dicarboxylate anaerobic carrier HMPREF0409_RS08165 PF00291 Pyridoxal-phosphate dependent enzyme HMPREF0409_RS08165 PF13291 ACT domain HMPREF0409_RS08170 PF00392 Bacterial regulatory proteins, gntR family HMPREF0409_RS08170 PF00155 Aminotransferase class I and II HMPREF0409_RS08175 PF01053 Cys/Met metabolism PLP-dependent enzyme HMPREF0409_RS08185 PF10371 Domain of unknown function HMPREF0409_RS08185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HMPREF0409_RS08185 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HMPREF0409_RS08185 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HMPREF0409_RS08185 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HMPREF0409_RS08190 PF00301 Rubredoxin HMPREF0409_RS08190 PF00258 Flavodoxin HMPREF0409_RS08190 PF00753 Metallo-beta-lactamase superfamily HMPREF0409_RS08195 PF02770 Acyl-CoA dehydrogenase, middle domain HMPREF0409_RS08195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HMPREF0409_RS08195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HMPREF0409_RS08200 PF00082 Subtilase family HMPREF0409_RS08200 PF03797 Autotransporter beta-domain HMPREF0409_RS08200 PF12951 Passenger-associated-transport-repeat HMPREF0409_RS08205 PF02567 Phenazine biosynthesis-like protein HMPREF0409_RS08215 PF01022 Bacterial regulatory protein, arsR family HMPREF0409_RS08225 PF00403 Heavy-metal-associated domain HMPREF0409_RS08235 PF03606 C4-dicarboxylate anaerobic carrier HMPREF0409_RS08245 PF13683 Integrase core domain HMPREF0409_RS08245 PF01610 Transposase HMPREF0409_RS08255 PF13488 Glycine zipper HMPREF0409_RS08255 PF00691 OmpA family HMPREF0409_RS08280 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system HMPREF0409_RS08320 PF00403 Heavy-metal-associated domain HMPREF0409_RS08335 PF01743 Poly A polymerase head domain HMPREF0409_RS08335 PF13735 tRNA nucleotidyltransferase domain 2 putative HMPREF0409_RS08335 PF12627 Probable RNA and SrmB- binding site of polymerase A HMPREF0409_RS08340 PF02080 TrkA-C domain HMPREF0409_RS08340 PF02254 TrkA-N domain HMPREF0409_RS08350 PF00303 Thymidylate synthase HMPREF0409_RS08375 PF08011 PD-(D/E)XK nuclease superfamily HMPREF0409_RS08375 PF09820 Predicted AAA-ATPase HMPREF0409_RS08390 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS08395 PF09084 NMT1/THI5 like HMPREF0409_RS08400 PF00005 ABC transporter HMPREF0409_RS08420 PF00005 ABC transporter HMPREF0409_RS08440 PF00005 ABC transporter HMPREF0409_RS08445 PF00005 ABC transporter HMPREF0409_RS08445 PF02687 FtsX-like permease family HMPREF0409_RS08445 PF12704 MacB-like periplasmic core domain HMPREF0409_RS08450 PF12704 MacB-like periplasmic core domain HMPREF0409_RS08450 PF02687 FtsX-like permease family HMPREF0409_RS08465 PF01783 Ribosomal L32p protein family HMPREF0409_RS08470 PF06071 Protein of unknown function (DUF933) HMPREF0409_RS08470 PF01926 50S ribosome-binding GTPase HMPREF0409_RS08475 PF00121 Triosephosphate isomerase HMPREF0409_RS08495 PF02021 Uncharacterised protein family UPF0102 HMPREF0409_RS08500 PF01351 Ribonuclease HII HMPREF0409_RS08505 PF00849 RNA pseudouridylate synthase HMPREF0409_RS08505 PF01479 S4 domain HMPREF0409_RS08510 PF04073 Aminoacyl-tRNA editing domain HMPREF0409_RS08520 PF03390 2-hydroxycarboxylate transporter family HMPREF0409_RS08525 PF02436 Conserved carboxylase domain HMPREF0409_RS08525 PF00364 Biotin-requiring enzyme HMPREF0409_RS08525 PF00682 HMGL-like HMPREF0409_RS08530 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase HMPREF0409_RS08535 PF06857 Malonate decarboxylase delta subunit (MdcD) HMPREF0409_RS08540 PF03328 HpcH/HpaI aldolase/citrate lyase family HMPREF0409_RS08545 PF04223 Citrate lyase, alpha subunit (CitF) HMPREF0409_RS08555 PF05762 VWA domain containing CoxE-like protein HMPREF0409_RS08565 PF07728 AAA domain (dynein-related subfamily) HMPREF0409_RS08590 PF07733 Bacterial DNA polymerase III alpha NTPase domain HMPREF0409_RS08590 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HMPREF0409_RS08590 PF14579 Helix-hairpin-helix motif HMPREF0409_RS08590 PF01336 OB-fold nucleic acid binding domain HMPREF0409_RS08590 PF02811 PHP domain HMPREF0409_RS08605 PF00271 Helicase conserved C-terminal domain HMPREF0409_RS08605 PF00176 SNF2 family N-terminal domain HMPREF0409_RS08605 PF12419 SNF2 Helicase protein HMPREF0409_RS08630 PF01177 Asp/Glu/Hydantoin racemase HMPREF0409_RS08635 PF01245 Ribosomal protein L19 HMPREF0409_RS08645 PF02811 PHP domain HMPREF0409_RS08650 PF00156 Phosphoribosyl transferase domain HMPREF0409_RS08660 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HMPREF0409_RS08670 PF01180 Dihydroorotate dehydrogenase HMPREF0409_RS08675 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B HMPREF0409_RS08675 PF00175 Oxidoreductase NAD-binding domain HMPREF0409_RS08680 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HMPREF0409_RS08680 PF02142 MGS-like domain HMPREF0409_RS08680 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HMPREF0409_RS08685 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HMPREF0409_RS08685 PF00117 Glutamine amidotransferase class-I HMPREF0409_RS08690 PF01979 Amidohydrolase family HMPREF0409_RS08695 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HMPREF0409_RS08695 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HMPREF0409_RS08700 PF00156 Phosphoribosyl transferase domain HMPREF0409_RS08715 PF02132 RecR protein HMPREF0409_RS08715 PF13662 Toprim domain HMPREF0409_RS08720 PF04363 Protein of unknown function (DUF496) HMPREF0409_RS08725 PF00365 Phosphofructokinase HMPREF0409_RS08730 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HMPREF0409_RS08735 PF01039 Carboxyl transferase domain HMPREF0409_RS08745 PF00842 Alanine racemase, C-terminal domain HMPREF0409_RS08745 PF01168 Alanine racemase, N-terminal domain HMPREF0409_RS08750 PF00579 tRNA synthetases class I (W and Y) HMPREF0409_RS08755 PF00749 tRNA synthetases class I (E and Q), catalytic domain HMPREF0409_RS08775 PF00472 RF-1 domain HMPREF0409_RS08775 PF03462 PCRF domain HMPREF0409_RS08780 PF01648 4'-phosphopantetheinyl transferase superfamily HMPREF0409_RS08785 PF01026 TatD related DNase HMPREF0409_RS08795 PF06826 Predicted Permease Membrane Region HMPREF0409_RS08795 PF02080 TrkA-C domain HMPREF0409_RS08800 PF12327 FtsZ family, C-terminal domain HMPREF0409_RS08800 PF00091 Tubulin/FtsZ family, GTPase domain HMPREF0409_RS08805 PF02491 SHS2 domain inserted in FTSA HMPREF0409_RS08815 PF07478 D-ala D-ala ligase C-terminus HMPREF0409_RS08815 PF01820 D-ala D-ala ligase N-terminus HMPREF0409_RS08820 PF01565 FAD binding domain HMPREF0409_RS08820 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HMPREF0409_RS08825 PF08245 Mur ligase middle domain HMPREF0409_RS08825 PF02875 Mur ligase family, glutamate ligase domain HMPREF0409_RS08825 PF01225 Mur ligase family, catalytic domain HMPREF0409_RS08830 PF03033 Glycosyltransferase family 28 N-terminal domain HMPREF0409_RS08830 PF04101 Glycosyltransferase family 28 C-terminal domain HMPREF0409_RS08835 PF08245 Mur ligase middle domain HMPREF0409_RS08840 PF00953 Glycosyl transferase family 4 HMPREF0409_RS08840 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HMPREF0409_RS08845 PF01225 Mur ligase family, catalytic domain HMPREF0409_RS08845 PF02875 Mur ligase family, glutamate ligase domain HMPREF0409_RS08845 PF08245 Mur ligase middle domain HMPREF0409_RS08855 PF02627 Carboxymuconolactone decarboxylase family HMPREF0409_RS08865 PF02780 Transketolase, C-terminal domain HMPREF0409_RS08865 PF02779 Transketolase, pyrimidine binding domain HMPREF0409_RS08865 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HMPREF0409_RS08870 PF13411 MerR HTH family regulatory protein HMPREF0409_RS08890 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system HMPREF0409_RS08900 PF01613 Flavin reductase like domain HMPREF0409_RS08910 PF12008 Type I restriction and modification enzyme - subunit R C terminal HMPREF0409_RS08910 PF18766 SWI2/SNF2 ATPase HMPREF0409_RS08910 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HMPREF0409_RS08925 PF01420 Type I restriction modification DNA specificity domain HMPREF0409_RS08930 PF12161 HsdM N-terminal domain HMPREF0409_RS08930 PF02384 N-6 DNA Methylase HMPREF0409_RS08945 PF01769 Divalent cation transporter HMPREF0409_RS08945 PF00571 CBS domain HMPREF0409_RS08945 PF03448 MgtE intracellular N domain HMPREF0409_RS08950 PF01702 Queuine tRNA-ribosyltransferase HMPREF0409_RS08955 PF02824 TGS domain HMPREF0409_RS08955 PF04607 Region found in RelA / SpoT proteins HMPREF0409_RS08955 PF13291 ACT domain HMPREF0409_RS08960 PF00156 Phosphoribosyl transferase domain HMPREF0409_RS08975 PF01595 Cyclin M transmembrane N-terminal domain HMPREF0409_RS08975 PF03471 Transporter associated domain HMPREF0409_RS08975 PF00571 CBS domain HMPREF0409_RS08980 PF13291 ACT domain HMPREF0409_RS08985 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HMPREF0409_RS08985 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HMPREF0409_RS08990 PF02911 Formyl transferase, C-terminal domain HMPREF0409_RS08990 PF00551 Formyl transferase HMPREF0409_RS08995 PF03477 ATP cone domain HMPREF0409_RS09000 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HMPREF0409_RS09000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HMPREF0409_RS09005 PF02565 Recombination protein O C terminal HMPREF0409_RS09005 PF11967 Recombination protein O N terminal HMPREF0409_RS09015 PF04085 rod shape-determining protein MreC HMPREF0409_RS09020 PF07690 Major Facilitator Superfamily HMPREF0409_RS09025 PF00583 Acetyltransferase (GNAT) family HMPREF0409_RS09030 PF00344 SecY translocase HMPREF0409_RS09035 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HMPREF0409_RS09040 PF00327 Ribosomal protein L30p/L7e HMPREF0409_RS09045 PF03719 Ribosomal protein S5, C-terminal domain HMPREF0409_RS09045 PF00333 Ribosomal protein S5, N-terminal domain HMPREF0409_RS09050 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HMPREF0409_RS09055 PF00347 Ribosomal protein L6 HMPREF0409_RS09060 PF00410 Ribosomal protein S8 HMPREF0409_RS09065 PF00253 Ribosomal protein S14p/S29e HMPREF0409_RS09070 PF00673 ribosomal L5P family C-terminus HMPREF0409_RS09070 PF00281 Ribosomal protein L5 HMPREF0409_RS09075 PF00467 KOW motif HMPREF0409_RS09075 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HMPREF0409_RS09080 PF00238 Ribosomal protein L14p/L23e HMPREF0409_RS09085 PF00366 Ribosomal protein S17 HMPREF0409_RS09090 PF00831 Ribosomal L29 protein HMPREF0409_RS09095 PF00252 Ribosomal protein L16p/L10e HMPREF0409_RS09100 PF00189 Ribosomal protein S3, C-terminal domain HMPREF0409_RS09100 PF07650 KH domain HMPREF0409_RS09105 PF00237 Ribosomal protein L22p/L17e HMPREF0409_RS09110 PF00203 Ribosomal protein S19 HMPREF0409_RS09115 PF03947 Ribosomal Proteins L2, C-terminal domain HMPREF0409_RS09115 PF00181 Ribosomal Proteins L2, RNA binding domain HMPREF0409_RS09120 PF00276 Ribosomal protein L23 HMPREF0409_RS09125 PF00573 Ribosomal protein L4/L1 family HMPREF0409_RS09130 PF00297 Ribosomal protein L3 HMPREF0409_RS09135 PF00338 Ribosomal protein S10p/S20e HMPREF0409_RS09145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HMPREF0409_RS09145 PF00005 ABC transporter HMPREF0409_RS09150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HMPREF0409_RS09150 PF00005 ABC transporter HMPREF0409_RS09155 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS09155 PF12911 N-terminal TM domain of oligopeptide transport permease C HMPREF0409_RS09160 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS09165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HMPREF0409_RS09170 PF01554 MatE HMPREF0409_RS09175 PF00892 EamA-like transporter family HMPREF0409_RS09180 PF00005 ABC transporter HMPREF0409_RS09185 PF00005 ABC transporter HMPREF0409_RS09190 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS09195 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS09200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HMPREF0409_RS09205 PF00885 6,7-dimethyl-8-ribityllumazine synthase HMPREF0409_RS09210 PF01872 RibD C-terminal domain HMPREF0409_RS09210 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HMPREF0409_RS09215 PF00677 Lumazine binding domain HMPREF0409_RS09220 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HMPREF0409_RS09220 PF00925 GTP cyclohydrolase II HMPREF0409_RS09250 PF00133 tRNA synthetases class I (I, L, M and V) HMPREF0409_RS09250 PF08264 Anticodon-binding domain of tRNA HMPREF0409_RS09250 PF13603 Leucyl-tRNA synthetase, Domain 2 HMPREF0409_RS09250 PF09334 tRNA synthetases class I (M) HMPREF0409_RS09255 PF04542 Sigma-70 region 2 HMPREF0409_RS09255 PF08281 Sigma-70, region 4 HMPREF0409_RS09260 PF08032 RNA 2'-O ribose methyltransferase substrate binding HMPREF0409_RS09260 PF00588 SpoU rRNA Methylase family HMPREF0409_RS09265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HMPREF0409_RS09280 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS09285 PF00528 Binding-protein-dependent transport system inner membrane component HMPREF0409_RS09285 PF12911 N-terminal TM domain of oligopeptide transport permease C HMPREF0409_RS09290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HMPREF0409_RS09295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HMPREF0409_RS09295 PF00005 ABC transporter HMPREF0409_RS09300 PF00005 ABC transporter HMPREF0409_RS09300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HMPREF0409_RS09330 PF04172 LrgB-like family HMPREF0409_RS09335 PF03788 LrgA family HMPREF0409_RS09340 PF01012 Electron transfer flavoprotein domain HMPREF0409_RS09340 PF00766 Electron transfer flavoprotein FAD-binding domain HMPREF0409_RS09345 PF01012 Electron transfer flavoprotein domain HMPREF0409_RS09355 PF01565 FAD binding domain HMPREF0409_RS09355 PF02913 FAD linked oxidases, C-terminal domain HMPREF0409_RS09360 PF02374 Anion-transporting ATPase HMPREF0409_RS09360 PF17886 HSP20-like domain found in ArsA HMPREF0409_RS09365 PF17886 HSP20-like domain found in ArsA HMPREF0409_RS09365 PF02374 Anion-transporting ATPase HMPREF0409_RS09370 PF02589 LUD domain HMPREF0409_RS09375 PF02589 LUD domain HMPREF0409_RS09375 PF13183 4Fe-4S dicluster domain HMPREF0409_RS09375 PF11870 Domain of unknown function (DUF3390) HMPREF0409_RS09380 PF00348 Polyprenyl synthetase HMPREF0409_RS09390 PF01209 ubiE/COQ5 methyltransferase family HMPREF0409_RS09395 PF01494 FAD binding domain HMPREF0409_RS09415 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system HMPREF0409_RS09430 PF03144 Elongation factor Tu domain 2 HMPREF0409_RS09430 PF00009 Elongation factor Tu GTP binding domain HMPREF0409_RS09430 PF00679 Elongation factor G C-terminus HMPREF0409_RS09430 PF03764 Elongation factor G, domain IV HMPREF0409_RS09430 PF14492 Elongation Factor G, domain II HMPREF0409_RS09435 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HMPREF0409_RS09435 PF02378 Phosphotransferase system, EIIC HMPREF0409_RS09435 PF00367 phosphotransferase system, EIIB HMPREF0409_RS09445 PF01145 SPFH domain / Band 7 family HMPREF0409_RS09465 PF03144 Elongation factor Tu domain 2 HMPREF0409_RS09465 PF00009 Elongation factor Tu GTP binding domain HMPREF0409_RS09465 PF03143 Elongation factor Tu C-terminal domain HMPREF0409_RS09470 PF00679 Elongation factor G C-terminus HMPREF0409_RS09470 PF14492 Elongation Factor G, domain II HMPREF0409_RS09470 PF03764 Elongation factor G, domain IV HMPREF0409_RS09470 PF03144 Elongation factor Tu domain 2 HMPREF0409_RS09470 PF00009 Elongation factor Tu GTP binding domain HMPREF0409_RS09475 PF00177 Ribosomal protein S7p/S5e HMPREF0409_RS09480 PF00164 Ribosomal protein S12/S23 HMPREF0409_RS09485 PF02080 TrkA-C domain HMPREF0409_RS09485 PF00999 Sodium/hydrogen exchanger family HMPREF0409_RS09485 PF03471 Transporter associated domain HMPREF0409_RS09495 PF02578 Multi-copper polyphenol oxidoreductase laccase HMPREF0409_RS09500 PF00793 DAHP synthetase I family HMPREF0409_RS09500 PF18152 DAHP synthase ferredoxin-like domain HMPREF0409_RS09565 PF01541 GIY-YIG catalytic domain HMPREF0409_RS09570 PF09115 DNA polymerase III, delta subunit, C terminal HMPREF0409_RS09580 PF00636 Ribonuclease III domain HMPREF0409_RS09585 PF01406 tRNA synthetases class I (C) catalytic domain HMPREF0409_RS09585 PF09190 DALR domain HMPREF0409_RS09595 PF01713 Smr domain HMPREF0409_RS09595 PF00488 MutS domain V HMPREF0409_RS09620 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HMPREF0409_RS09620 PF13378 Enolase C-terminal domain-like HMPREF0409_RS09625 PF01726 LexA DNA binding domain HMPREF0409_RS09625 PF00717 Peptidase S24-like HMPREF0409_RS09635 PF00037 4Fe-4S binding domain HMPREF0409_RS09635 PF13187 4Fe-4S dicluster domain HMPREF0409_RS09635 PF04060 Putative Fe-S cluster HMPREF0409_RS09640 PF02508 Rnf-Nqr subunit, membrane protein HMPREF0409_RS09645 PF02508 Rnf-Nqr subunit, membrane protein HMPREF0409_RS09650 PF04205 FMN-binding domain HMPREF0409_RS09655 PF03116 NQR2, RnfD, RnfE family HMPREF0409_RS09660 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HMPREF0409_RS09660 PF10531 SLBB domain HMPREF0409_RS09660 PF13375 RnfC Barrel sandwich hybrid domain HMPREF0409_RS09660 PF13237 4Fe-4S dicluster domain HMPREF0409_RS09665 PF01195 Peptidyl-tRNA hydrolase HMPREF0409_RS09755 PF05594 Haemagluttinin repeat HMPREF0409_RS09755 PF04829 Pre-toxin domain with VENN motif HMPREF0409_RS09755 PF15526 Novel toxin 21 HMPREF0409_RS09755 PF05860 haemagglutination activity domain HMPREF0409_RS09755 PF13332 Hemagglutinin repeat HMPREF0409_RS09765 PF01416 tRNA pseudouridine synthase HMPREF0409_RS09775 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system HMPREF0409_RS09785 PF03009 Glycerophosphoryl diester phosphodiesterase family HMPREF0409_RS09790 PF14602 Hexapeptide repeat of succinyl-transferase HMPREF0409_RS09790 PF00132 Bacterial transferase hexapeptide (six repeats) HMPREF0409_RS09790 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HMPREF0409_RS09800 PF07244 Surface antigen variable number repeat HMPREF0409_RS09800 PF01103 Surface antigen HMPREF0409_RS09810 PF01556 DnaJ C terminal domain HMPREF0409_RS09810 PF00226 DnaJ domain HMPREF0409_RS09810 PF00684 DnaJ central domain HMPREF0409_RS09815 PF00483 Nucleotidyl transferase HMPREF0409_RS09815 PF00132 Bacterial transferase hexapeptide (six repeats) HMPREF0409_RS09815 PF14602 Hexapeptide repeat of succinyl-transferase HMPREF0409_RS09820 PF14572 Phosphoribosyl synthetase-associated domain HMPREF0409_RS09820 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HMPREF0409_RS09825 PF01300 Telomere recombination HMPREF0409_RS09840 PF02592 Putative vitamin uptake transporter HMPREF0409_RS09845 PF01554 MatE HMPREF0409_RS09850 PF07724 AAA domain (Cdc48 subfamily) HMPREF0409_RS09850 PF02861 Clp amino terminal domain, pathogenicity island component HMPREF0409_RS09850 PF00004 ATPase family associated with various cellular activities (AAA) HMPREF0409_RS09850 PF10431 C-terminal, D2-small domain, of ClpB protein HMPREF0409_RS09850 PF17871 AAA lid domain HMPREF0409_RS09855 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ HMPREF0409_RS09870 PF13309 HTH domain HMPREF0409_RS09870 PF08348 YheO-like PAS domain HMPREF0409_RS09875 PF01212 Beta-eliminating lyase HMPREF0409_RS09880 PF00209 Sodium:neurotransmitter symporter family HMPREF0409_RS09885 PF01235 Sodium:alanine symporter family HMPREF0409_RS09890 PF07722 Peptidase C26 HMPREF0409_RS09900 PF01418 Helix-turn-helix domain, rpiR family HMPREF0409_RS09900 PF01380 SIS domain HMPREF0409_RS09950 PF00005 ABC transporter HMPREF0409_RS09955 PF01032 FecCD transport family HMPREF0409_RS09965 PF07715 TonB-dependent Receptor Plug Domain HMPREF0409_RS09965 PF00593 TonB dependent receptor HMPREF0409_RS09975 PF00106 short chain dehydrogenase HMPREF0409_RS09980 PF01042 Endoribonuclease L-PSP HMPREF0409_RS10015 PF00271 Helicase conserved C-terminal domain HMPREF0409_RS10015 PF00270 DEAD/DEAH box helicase HMPREF0409_RS10020 PF02618 YceG-like family HMPREF0409_RS10025 PF11734 TilS substrate C-terminal domain HMPREF0409_RS10025 PF01171 PP-loop family HMPREF0409_RS10030 PF17862 AAA+ lid domain HMPREF0409_RS10030 PF06480 FtsH Extracellular HMPREF0409_RS10030 PF00004 ATPase family associated with various cellular activities (AAA) HMPREF0409_RS10030 PF01434 Peptidase family M41 HMPREF0409_RS10035 PF00312 Ribosomal protein S15 HMPREF0409_RS10045 PF00578 AhpC/TSA family HMPREF0409_RS10045 PF10417 C-terminal domain of 1-Cys peroxiredoxin HMPREF0409_RS10050 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMPREF0409_RS10055 PF06123 Inner membrane protein CreD HMPREF0409_RS10065 PF07729 FCD domain HMPREF0409_RS10065 PF00392 Bacterial regulatory proteins, gntR family HMPREF0409_RS10070 PF01212 Beta-eliminating lyase HMPREF0409_RS10075 PF00209 Sodium:neurotransmitter symporter family HMPREF0409_RS10080 PF02527 rRNA small subunit methyltransferase G HMPREF0409_RS10085 PF01134 Glucose inhibited division protein A HMPREF0409_RS10085 PF13932 GidA associated domain HMPREF0409_RS10090 PF02254 TrkA-N domain HMPREF0409_RS10090 PF02080 TrkA-C domain HMPREF0409_RS10095 PF02386 Cation transport protein HMPREF0409_RS10100 PF01554 MatE HMPREF0409_RS10105 PF00654 Voltage gated chloride channel HMPREF0409_RS10110 PF01470 Pyroglutamyl peptidase HMPREF0409_RS10115 PF01063 Amino-transferase class IV HMPREF0409_RS10120 PF00425 chorismate binding enzyme HMPREF0409_RS10120 PF04715 Anthranilate synthase component I, N terminal region HMPREF0409_RS10125 PF00117 Glutamine amidotransferase class-I HMPREF0409_RS10125 PF02885 Glycosyl transferase family, helical bundle domain HMPREF0409_RS10125 PF00591 Glycosyl transferase family, a/b domain HMPREF0409_RS10135 PF01813 ATP synthase subunit D HMPREF0409_RS10140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HMPREF0409_RS10140 PF02874 ATP synthase alpha/beta family, beta-barrel domain HMPREF0409_RS10145 PF16886 ATPsynthase alpha/beta subunit N-term extension HMPREF0409_RS10145 PF02874 ATP synthase alpha/beta family, beta-barrel domain HMPREF0409_RS10145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HMPREF0409_RS10150 PF01990 ATP synthase (F/14-kDa) subunit HMPREF0409_RS10155 PF01992 ATP synthase (C/AC39) subunit HMPREF0409_RS10160 PF01991 ATP synthase (E/31 kDa) subunit HMPREF0409_RS10165 PF00137 ATP synthase subunit C HMPREF0409_RS10170 PF01496 V-type ATPase 116kDa subunit family HMPREF0409_RS10180 PF02581 Thiamine monophosphate synthase HMPREF0409_RS10190 PF05690 Thiazole biosynthesis protein ThiG HMPREF0409_RS10195 PF00899 ThiF family HMPREF0409_RS10205 PF01964 Radical SAM ThiC family HMPREF0409_RS10210 PF02581 Thiamine monophosphate synthase HMPREF0409_RS10215 PF08543 Phosphomethylpyrimidine kinase HMPREF0409_RS10235 PF01757 Acyltransferase family HMPREF0409_RS10240 PF03030 Inorganic H+ pyrophosphatase HMPREF0409_RS10245 PF02424 ApbE family HMPREF0409_RS10255 PF00625 Guanylate kinase HMPREF0409_RS10260 PF08340 Domain of unknown function (DUF1732) HMPREF0409_RS10260 PF03755 YicC-like family, N-terminal region HMPREF0409_RS10265 PF04997 RNA polymerase Rpb1, domain 1 HMPREF0409_RS10265 PF00623 RNA polymerase Rpb1, domain 2 HMPREF0409_RS10265 PF04998 RNA polymerase Rpb1, domain 5 HMPREF0409_RS10265 PF05000 RNA polymerase Rpb1, domain 4 HMPREF0409_RS10265 PF04983 RNA polymerase Rpb1, domain 3 HMPREF0409_RS10270 PF04561 RNA polymerase Rpb2, domain 2 HMPREF0409_RS10270 PF04563 RNA polymerase beta subunit HMPREF0409_RS10270 PF04560 RNA polymerase Rpb2, domain 7 HMPREF0409_RS10270 PF00562 RNA polymerase Rpb2, domain 6 HMPREF0409_RS10270 PF10385 RNA polymerase beta subunit external 1 domain HMPREF0409_RS10270 PF04565 RNA polymerase Rpb2, domain 3 HMPREF0409_RS10275 PF00542 Ribosomal protein L7/L12 C-terminal domain HMPREF0409_RS10275 PF16320 Ribosomal protein L7/L12 dimerisation domain HMPREF0409_RS10280 PF00466 Ribosomal protein L10 HMPREF0409_RS10285 PF00687 Ribosomal protein L1p/L10e family HMPREF0409_RS10290 PF00298 Ribosomal protein L11, RNA binding domain HMPREF0409_RS10290 PF03946 Ribosomal protein L11, N-terminal domain HMPREF0409_RS10295 PF02357 Transcription termination factor nusG HMPREF0409_RS10310 PF00471 Ribosomal protein L33 HMPREF0409_RS10315 PF01475 Ferric uptake regulator family HMPREF0409_RS10335 PF00342 Phosphoglucose isomerase HMPREF0409_RS10345 PF13344 Haloacid dehalogenase-like hydrolase HMPREF0409_RS10350 PF03372 Endonuclease/Exonuclease/phosphatase family HMPREF0409_RS10355 PF01220 Dehydroquinase class II HMPREF0409_RS10360 PF08501 Shikimate dehydrogenase substrate binding domain HMPREF0409_RS10375 PF01098 Cell cycle protein HMPREF0409_RS10380 PF05979 Bacterial protein of unknown function (DUF896) HMPREF0409_RS10385 PF01336 OB-fold nucleic acid binding domain HMPREF0409_RS10385 PF00152 tRNA synthetases class II (D, K and N) HMPREF0409_RS10390 PF01751 Toprim domain HMPREF0409_RS10390 PF13331 Domain of unknown function (DUF4093) HMPREF0409_RS10430 PF04226 Transglycosylase associated protein HMPREF0409_RS10460 PF01268 Formate--tetrahydrofolate ligase HMPREF0409_RS10480 PF13488 Glycine zipper HMPREF0409_RS10480 PF00691 OmpA family HMPREF0409_RS10525 PF00578 AhpC/TSA family HMPREF0409_RS10530 PF01966 HD domain HMPREF0409_RS10535 PF01235 Sodium:alanine symporter family HMPREF0409_RS10540 PF07282 Putative transposase DNA-binding domain HMPREF0409_RS10540 PF01385 Probable transposase HMPREF0409_RS10540 PF12323 Helix-turn-helix domain HMPREF0409_RS10545 PF07685 CobB/CobQ-like glutamine amidotransferase domain HMPREF0409_RS10560 PF00156 Phosphoribosyl transferase domain HMPREF0409_RS10565 PF03553 Na+/H+ antiporter family HMPREF0409_RS10570 PF00258 Flavodoxin HMPREF0409_RS10575 PF03606 C4-dicarboxylate anaerobic carrier HMPREF0409_RS10580 PF04026 SpoVG HMPREF0409_RS10590 PF01479 S4 domain HMPREF0409_RS10595 PF17757 UvrB interaction domain HMPREF0409_RS10595 PF02559 CarD-like/TRCF domain HMPREF0409_RS10595 PF00270 DEAD/DEAH box helicase HMPREF0409_RS10595 PF00271 Helicase conserved C-terminal domain HMPREF0409_RS10595 PF03461 TRCF domain HMPREF0409_RS10600 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system HMPREF0409_RS10635 PF05191 Adenylate kinase, active site lid HMPREF0409_RS10640 PF02829 3H domain HMPREF0409_RS10640 PF08279 HTH domain HMPREF0409_RS10645 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HMPREF0409_RS10645 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HMPREF0409_RS10650 PF00890 FAD binding domain HMPREF0409_RS10655 PF02445 Quinolinate synthetase A protein HMPREF0409_RS10665 PF01134 Glucose inhibited division protein A HMPREF0409_RS10665 PF13932 GidA associated domain HMPREF0409_RS10670 PF12631 MnmE helical domain HMPREF0409_RS10670 PF01926 50S ribosome-binding GTPase HMPREF0409_RS10670 PF10396 GTP-binding protein TrmE N-terminus HMPREF0409_RS10675 PF01424 R3H domain HMPREF0409_RS10675 PF14804 Jag N-terminus HMPREF0409_RS10680 PF02096 60Kd inner membrane protein HMPREF0409_RS10685 PF01809 Putative membrane protein insertion efficiency factor HMPREF0409_RS10690 PF00825 Ribonuclease P HMPREF0409_RS10695 PF00468 Ribosomal protein L34 HMPREF0409_RS10745 PF00521 DNA gyrase/topoisomerase IV, subunit A HMPREF0409_RS10745 PF03989 DNA gyrase C-terminal domain, beta-propeller HMPREF0409_RS10750 PF00521 DNA gyrase/topoisomerase IV, subunit A HMPREF0409_RS10750 PF03989 DNA gyrase C-terminal domain, beta-propeller