locus-tag class description FN0002 PF00825 Ribonuclease P FN0003 PF01809 Putative membrane protein insertion efficiency factor FN0004 PF02096 60Kd inner membrane protein FN0005 PF14804 Jag N-terminus FN0005 PF01424 R3H domain FN0006 PF10396 GTP-binding protein TrmE N-terminus FN0006 PF12631 MnmE helical domain FN0006 PF01926 50S ribosome-binding GTPase FN0007 PF01134 Glucose inhibited division protein A FN0007 PF13932 GidA associated domain FN0008 PF02445 Quinolinate synthetase A protein FN0009 PF00890 FAD binding domain FN0010 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FN0010 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FN0011 PF08279 HTH domain FN0011 PF02829 3H domain FN0019 PF02559 CarD-like/TRCF domain FN0019 PF00270 DEAD/DEAH box helicase FN0019 PF00271 Helicase conserved C-terminal domain FN0019 PF03461 TRCF domain FN0019 PF17757 UvrB interaction domain FN0020 PF01479 S4 domain FN0022 PF04026 SpoVG FN0023 PF03606 C4-dicarboxylate anaerobic carrier FN0029 PF00258 Flavodoxin FN0039 PF13331 Domain of unknown function (DUF4093) FN0039 PF01751 Toprim domain FN0040 PF00152 tRNA synthetases class II (D, K and N) FN0040 PF01336 OB-fold nucleic acid binding domain FN0041 PF05979 Bacterial protein of unknown function (DUF896) FN0042 PF01098 Cell cycle protein FN0045 PF08501 Shikimate dehydrogenase substrate binding domain FN0046 PF01220 Dehydroquinase class II FN0047 PF03372 Endonuclease/Exonuclease/phosphatase family FN0048 PF13344 Haloacid dehalogenase-like hydrolase FN0050 PF00890 FAD binding domain FN0050 PF14537 Cytochrome c3 FN0052 PF03960 ArsC family FN0053 PF05525 Branched-chain amino acid transport protein FN0054 PF00579 tRNA synthetases class I (W and Y) FN0055 PF13607 Succinyl-CoA ligase like flavodoxin domain FN0055 PF00583 Acetyltransferase (GNAT) family FN0055 PF13380 CoA binding domain FN0057 PF00730 HhH-GPD superfamily base excision DNA repair protein FN0057 PF00633 Helix-hairpin-helix motif FN0058 PF00266 Aminotransferase class-V FN0059 PF01592 NifU-like N terminal domain FN0061 PF02074 Carboxypeptidase Taq (M32) metallopeptidase FN0065 PF17674 HHH domain FN0065 PF16921 Tex protein YqgF-like domain FN0065 PF09371 Tex-like protein N-terminal domain FN0065 PF00575 S1 RNA binding domain FN0066 PF00512 His Kinase A (phospho-acceptor) domain FN0066 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FN0067 PF08264 Anticodon-binding domain of tRNA FN0067 PF06827 Zinc finger found in FPG and IleRS FN0067 PF00133 tRNA synthetases class I (I, L, M and V) FN0068 PF01252 Signal peptidase (SPase) II FN0069 PF02091 Glycyl-tRNA synthetase alpha subunit FN0070 PF02092 Glycyl-tRNA synthetase beta subunit FN0070 PF05746 DALR anticodon binding domain FN0071 PF01227 GTP cyclohydrolase I FN0072 PF02152 Dihydroneopterin aldolase FN0072 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FN0073 PF00809 Pterin binding enzyme FN0074 PF00936 BMC domain FN0075 PF10662 Ethanolamine utilisation - propanediol utilisation FN0076 PF03861 ANTAR domain FN0076 PF00072 Response regulator receiver domain FN0077 PF07568 Histidine kinase FN0077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FN0077 PF12282 Signal transduction histidine kinase FN0078 PF06277 Ethanolamine utilisation protein EutA FN0079 PF06751 Ethanolamine ammonia lyase large subunit (EutB) FN0080 PF05985 Ethanolamine ammonia-lyase light chain (EutC) FN0081 PF00936 BMC domain FN0082 PF00936 BMC domain FN0083 PF00936 BMC domain FN0084 PF00171 Aldehyde dehydrogenase family FN0084 PF00465 Iron-containing alcohol dehydrogenase FN0089 PF04346 Ethanolamine utilisation protein, EutH FN0092 PF00465 Iron-containing alcohol dehydrogenase FN0093 PF00085 Thioredoxin FN0099 PF00719 Inorganic pyrophosphatase FN0100 PF00970 Oxidoreductase FAD-binding domain FN0100 PF00111 2Fe-2S iron-sulfur cluster binding domain FN0100 PF00175 Oxidoreductase NAD-binding domain FN0102 PF02867 Ribonucleotide reductase, barrel domain FN0102 PF03477 ATP cone domain FN0102 PF00317 Ribonucleotide reductase, all-alpha domain FN0103 PF00268 Ribonucleotide reductase, small chain FN0107 PF00474 Sodium:solute symporter family FN0108 PF17676 LD-carboxypeptidase C-terminal domain FN0108 PF02016 LD-carboxypeptidase N-terminal domain FN0110 PF02403 Seryl-tRNA synthetase N-terminal domain FN0110 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FN0113 PF01628 HrcA protein C terminal domain FN0114 PF01025 GrpE FN0116 PF00012 Hsp70 protein FN0117 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FN0117 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FN0118 PF00226 DnaJ domain FN0118 PF01556 DnaJ C terminal domain FN0118 PF00684 DnaJ central domain FN0127 PF04055 Radical SAM superfamily FN0127 PF01018 GTP1/OBG FN0127 PF01926 50S ribosome-binding GTPase FN0129 PF02492 CobW/HypB/UreG, nucleotide-binding domain FN0130 PF00005 ABC transporter FN0131 PF17287 POTRA domain FN0131 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB FN0131 PF08479 POTRA domain, ShlB-type FN0132 PF05594 Haemagluttinin repeat FN0132 PF13332 Hemagglutinin repeat FN0132 PF05860 haemagglutination activity domain FN0132 PF15526 Novel toxin 21 FN0132 PF05594 Haemagluttinin repeat FN0132 PF04829 Pre-toxin domain with VENN motif FN0132 PF05860 haemagglutination activity domain FN0132 PF15526 Novel toxin 21 FN0132 PF04829 Pre-toxin domain with VENN motif FN0132 PF13332 Hemagglutinin repeat FN0139 PF00665 Integrase core domain FN0139 PF13333 Integrase core domain FN0139 PF13276 HTH-like domain FN0147 PF02504 Fatty acid synthesis protein FN0148 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FN0148 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FN0149 PF00698 Acyl transferase domain FN0150 PF00550 Phosphopantetheine attachment site FN0151 PF02801 Beta-ketoacyl synthase, C-terminal domain FN0151 PF00109 Beta-ketoacyl synthase, N-terminal domain FN0152 PF14622 Ribonuclease-III-like FN0152 PF00035 Double-stranded RNA binding motif FN0153 PF16199 Radical_SAM C-terminal domain FN0153 PF04055 Radical SAM superfamily FN0154 PF00575 S1 RNA binding domain FN0154 PF10150 Ribonuclease E/G family FN0156 PF01467 Cytidylyltransferase-like FN0157 PF18073 Rubredoxin metal binding domain FN0158 PF02457 DisA bacterial checkpoint controller nucleotide-binding FN0158 PF10635 DisA bacterial checkpoint controller linker region FN0161 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) FN0162 PF01554 MatE FN0163 PF02607 B12 binding domain FN0163 PF02310 B12 binding domain FN0163 PF02965 Vitamin B12 dependent methionine synthase, activation domain FN0163 PF00809 Pterin binding enzyme FN0163 PF02574 Homocysteine S-methyltransferase FN0164 PF01510 N-acetylmuramoyl-L-alanine amidase FN0170 PF01926 50S ribosome-binding GTPase FN0170 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FN0174 PF03060 Nitronate monooxygenase FN0175 PF03775 Septum formation inhibitor MinC, C-terminal domain FN0176 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FN0177 PF03776 Septum formation topological specificity factor MinE FN0182 PF04324 BFD-like [2Fe-2S] binding domain FN0182 PF07992 Pyridine nucleotide-disulphide oxidoreductase FN0183 PF06039 Malate:quinone oxidoreductase (Mqo) FN0186 PF02683 Cytochrome C biogenesis protein transmembrane region FN0187 PF08534 Redoxin FN0188 PF01641 SelR domain FN0188 PF01625 Peptide methionine sulfoxide reductase FN0189 PF00072 Response regulator receiver domain FN0189 PF12833 Helix-turn-helix domain FN0190 PF06580 Histidine kinase FN0190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FN0190 PF00672 HAMP domain FN0190 PF02743 Cache domain FN0192 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FN0193 PF00528 Binding-protein-dependent transport system inner membrane component FN0194 PF12911 N-terminal TM domain of oligopeptide transport permease C FN0194 PF00528 Binding-protein-dependent transport system inner membrane component FN0195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FN0195 PF00005 ABC transporter FN0200 PF00682 HMGL-like FN0200 PF00364 Biotin-requiring enzyme FN0200 PF02436 Conserved carboxylase domain FN0201 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit FN0202 PF01144 Coenzyme A transferase FN0203 PF01144 Coenzyme A transferase FN0204 PF01039 Carboxyl transferase domain FN0205 PF03616 Sodium/glutamate symporter FN0206 PF01869 BadF/BadG/BcrA/BcrD ATPase family FN0207 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component FN0208 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component FN0214 PF02075 Crossover junction endodeoxyribonuclease RuvC FN0215 PF02308 MgtC family FN0216 PF00106 short chain dehydrogenase FN0218 PF07722 Peptidase C26 FN0219 PF04397 LytTr DNA-binding domain FN0219 PF00072 Response regulator receiver domain FN0220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FN0220 PF06580 Histidine kinase FN0220 PF07694 5TMR of 5TMR-LYT FN0221 PF02554 Carbon starvation protein CstA FN0224 PF00271 Helicase conserved C-terminal domain FN0224 PF04851 Type III restriction enzyme, res subunit FN0224 PF02151 UvrB/uvrC motif FN0224 PF12344 Ultra-violet resistance protein B FN0224 PF17757 UvrB interaction domain FN0225 PF02447 GntP family permease FN0226 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FN0227 PF17042 Nucleotide-binding C-terminal domain FN0227 PF07005 Sugar-binding N-terminal domain FN0228 PF08220 DeoR-like helix-turn-helix domain FN0228 PF00455 DeoR C terminal sensor domain FN0235 PF00005 ABC transporter FN0236 PF09084 NMT1/THI5 like FN0237 PF00528 Binding-protein-dependent transport system inner membrane component FN0240 PF00303 Thymidylate synthase FN0242 PF02254 TrkA-N domain FN0242 PF02080 TrkA-C domain FN0243 PF01743 Poly A polymerase head domain FN0243 PF12627 Probable RNA and SrmB- binding site of polymerase A FN0243 PF13735 tRNA nucleotidyltransferase domain 2 putative FN0244 PF00403 Heavy-metal-associated domain FN0245 PF00403 Heavy-metal-associated domain FN0253 PF00691 OmpA family FN0257 PF03606 C4-dicarboxylate anaerobic carrier FN0258 PF00403 Heavy-metal-associated domain FN0260 PF01022 Bacterial regulatory protein, arsR family FN0261 PF04055 Radical SAM superfamily FN0262 PF01228 Glycine radical FN0262 PF02901 Pyruvate formate lyase-like FN0267 PF01513 ATP-NAD kinase FN0268 PF02463 RecF/RecN/SMC N terminal domain FN0269 PF00589 Phage integrase family FN0269 PF02899 Phage integrase, N-terminal SAM-like domain FN0270 PF07650 KH domain FN0270 PF01926 50S ribosome-binding GTPase FN0271 PF00378 Enoyl-CoA hydratase/isomerase FN0272 PF01144 Coenzyme A transferase FN0273 PF01144 Coenzyme A transferase FN0276 PF02690 Na+/Pi-cotransporter FN0278 PF01546 Peptidase family M20/M25/M40 FN0279 PF04333 MlaA lipoprotein FN0281 PF02811 PHP domain FN0281 PF00929 Exonuclease FN0281 PF14579 Helix-hairpin-helix motif FN0281 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FN0281 PF11490 DNA polymerase III polC-type N-terminus II FN0281 PF07733 Bacterial DNA polymerase III alpha NTPase domain FN0282 PF09936 SAM-dependent RNA methyltransferase FN0283 PF01746 tRNA (Guanine-1)-methyltransferase FN0284 PF05239 PRC-barrel domain FN0284 PF01782 RimM N-terminal domain FN0287 PF00398 Ribosomal RNA adenine dimethylase FN0288 PF00156 Phosphoribosyl transferase domain FN0291 PF05594 Haemagluttinin repeat FN0291 PF13332 Hemagglutinin repeat FN0291 PF04829 Pre-toxin domain with VENN motif FN0291 PF15526 Novel toxin 21 FN0291 PF05594 Haemagluttinin repeat FN0291 PF04829 Pre-toxin domain with VENN motif FN0291 PF13332 Hemagglutinin repeat FN0291 PF05860 haemagglutination activity domain FN0291 PF15526 Novel toxin 21 FN0291 PF05860 haemagglutination activity domain FN0294 PF00456 Transketolase, thiamine diphosphate binding domain FN0295 PF02780 Transketolase, C-terminal domain FN0295 PF02779 Transketolase, pyrimidine binding domain FN0297 PF00004 ATPase family associated with various cellular activities (AAA) FN0297 PF16193 AAA C-terminal domain FN0297 PF12002 MgsA AAA+ ATPase C terminal FN0298 PF03129 Anticodon binding domain FN0298 PF13393 Histidyl-tRNA synthetase FN0299 PF00152 tRNA synthetases class II (D, K and N) FN0299 PF02938 GAD domain FN0299 PF01336 OB-fold nucleic acid binding domain FN0300 PF01497 Periplasmic binding protein FN0301 PF01032 FecCD transport family FN0302 PF00005 ABC transporter FN0303 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family FN0304 PF08369 Proto-chlorophyllide reductase 57 kD subunit FN0304 PF00148 Nitrogenase component 1 type Oxidoreductase FN0306 PF01032 FecCD transport family FN0307 PF00005 ABC transporter FN0309 PF00528 Binding-protein-dependent transport system inner membrane component FN0310 PF00005 ABC transporter FN0310 PF17912 MalK OB fold domain FN0311 PF03477 ATP cone domain FN0311 PF13597 Anaerobic ribonucleoside-triphosphate reductase FN0313 PF01189 16S rRNA methyltransferase RsmB/F FN0313 PF01029 NusB family FN0315 PF12833 Helix-turn-helix domain FN0315 PF06445 GyrI-like small molecule binding domain FN0317 PF00291 Pyridoxal-phosphate dependent enzyme FN0318 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase FN0319 PF08218 Citrate lyase ligase C-terminal domain FN0321 PF00183 Hsp90 protein FN0321 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FN0322 PF00274 Fructose-bisphosphate aldolase class-I FN0325 PF00453 Ribosomal protein L20 FN0326 PF01632 Ribosomal protein L35 FN0327 PF05198 Translation initiation factor IF-3, N-terminal domain FN0327 PF00707 Translation initiation factor IF-3, C-terminal domain FN0328 PF01235 Sodium:alanine symporter family FN0329 PF00572 Ribosomal protein L13 FN0330 PF00380 Ribosomal protein S9/S16 FN0332 PF01544 CorA-like Mg2+ transporter protein FN0333 PF04309 Glycerol-3-phosphate responsive antiterminator FN0335 PF00691 OmpA family FN0340 PF07670 Nucleoside recognition FN0341 PF03553 Na+/H+ antiporter family FN0341 PF13726 Na+-H+ antiporter family FN0342 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FN0344 PF02926 THUMP domain FN0344 PF01170 Putative RNA methylase family UPF0020 FN0345 PF01594 AI-2E family transporter FN0347 PF02666 Phosphatidylserine decarboxylase FN0348 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FN0348 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FN0348 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain FN0349 PF02580 D-Tyr-tRNA(Tyr) deacylase FN0352 PF03553 Na+/H+ antiporter family FN0355 PF00438 S-adenosylmethionine synthetase, N-terminal domain FN0355 PF02772 S-adenosylmethionine synthetase, central domain FN0355 PF02773 S-adenosylmethionine synthetase, C-terminal domain FN0356 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FN0357 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FN0358 PF02874 ATP synthase alpha/beta family, beta-barrel domain FN0358 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FN0359 PF00231 ATP synthase FN0360 PF02874 ATP synthase alpha/beta family, beta-barrel domain FN0360 PF00306 ATP synthase alpha/beta chain, C terminal domain FN0360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FN0361 PF00213 ATP synthase delta (OSCP) subunit FN0362 PF00430 ATP synthase B/B' CF(0) FN0363 PF00137 ATP synthase subunit C FN0364 PF00119 ATP synthase A chain FN0366 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FN0366 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FN0366 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FN0366 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FN0368 PF00206 Lyase FN0368 PF10397 Adenylosuccinate lyase C-terminus FN0370 PF10502 Signal peptidase, peptidase S26 FN0374 PF02272 DHHA1 domain FN0374 PF10141 Single-strand DNA-specific exonuclease, C terminal domain FN0374 PF17768 RecJ OB domain FN0374 PF01368 DHH family FN0376 PF00005 ABC transporter FN0376 PF08402 TOBE domain FN0377 PF00528 Binding-protein-dependent transport system inner membrane component FN0378 PF16363 GDP-mannose 4,6 dehydratase FN0383 PF00534 Glycosyl transferases group 1 FN0383 PF13439 Glycosyltransferase Family 4 FN0386 PF03537 Glycoside-hydrolase family GH114 FN0388 PF04072 Leucine carboxyl methyltransferase FN0393 PF01522 Polysaccharide deacetylase FN0396 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FN0397 PF00528 Binding-protein-dependent transport system inner membrane component FN0398 PF12911 N-terminal TM domain of oligopeptide transport permease C FN0398 PF00528 Binding-protein-dependent transport system inner membrane component FN0399 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FN0399 PF00005 ABC transporter FN0400 PF00005 ABC transporter FN0400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FN0405 PF00579 tRNA synthetases class I (W and Y) FN0406 PF01168 Alanine racemase, N-terminal domain FN0406 PF00842 Alanine racemase, C-terminal domain FN0408 PF01039 Carboxyl transferase domain FN0409 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FN0410 PF00365 Phosphofructokinase FN0411 PF04363 Protein of unknown function (DUF496) FN0412 PF02132 RecR protein FN0412 PF13662 Toprim domain FN0416 PF18273 Type III R-M EcoP15I C-terminal domain FN0416 PF01555 DNA methylase FN0417 PF04851 Type III restriction enzyme, res subunit FN0417 PF08774 VRR-NUC domain FN0418 PF00156 Phosphoribosyl transferase domain FN0419 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FN0419 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FN0420 PF01979 Amidohydrolase family FN0421 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FN0421 PF00117 Glutamine amidotransferase class-I FN0422 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FN0422 PF02142 MGS-like domain FN0422 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FN0423 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FN0423 PF00175 Oxidoreductase NAD-binding domain FN0424 PF01180 Dihydroorotate dehydrogenase FN0426 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FN0427 PF00156 Phosphoribosyl transferase domain FN0428 PF02811 PHP domain FN0430 PF01245 Ribosomal protein L19 FN0435 PF01048 Phosphorylase superfamily FN0436 PF02626 Carboxyltransferase domain, subdomain A and B FN0437 PF02682 Carboxyltransferase domain, subdomain C and D FN0438 PF01566 Natural resistance-associated macrophage protein FN0439 PF03746 LamB/YcsF family FN0447 PF00266 Aminotransferase class-V FN0450 PF02463 RecF/RecN/SMC N terminal domain FN0452 PF01380 SIS domain FN0453 PF01321 Creatinase/Prolidase N-terminal domain FN0453 PF00557 Metallopeptidase family M24 FN0454 PF00171 Aldehyde dehydrogenase family FN0455 PF02915 Rubrerythrin FN0460 PF00490 Delta-aminolevulinic acid dehydratase FN0461 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus FN0461 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FN0462 PF08676 MutL C terminal dimerisation domain FN0462 PF01119 DNA mismatch repair protein, C-terminal domain FN0463 PF02590 Predicted SPOUT methyltransferase FN0466 PF00152 tRNA synthetases class II (D, K and N) FN0466 PF01336 OB-fold nucleic acid binding domain FN0468 PF04172 LrgB-like family FN0469 PF03932 CutC family FN0470 PF03806 AbgT putative transporter family FN0471 PF05662 Coiled stalk of trimeric autotransporter adhesin FN0471 PF05658 Head domain of trimeric autotransporter adhesin FN0471 PF03895 YadA-like membrane anchor domain FN0472 PF00258 Flavodoxin FN0473 PF17932 Tetracyclin repressor-like, C-terminal domain FN0473 PF00440 Bacterial regulatory proteins, tetR family FN0474 PF00873 AcrB/AcrD/AcrF family FN0475 PF04055 Radical SAM superfamily FN0475 PF00919 Uncharacterized protein family UPF0004 FN0475 PF01938 TRAM domain FN0476 PF07497 Rho termination factor, RNA-binding domain FN0476 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FN0477 PF01551 Peptidase family M23 FN0477 PF04225 Opacity-associated protein A LysM-like domain FN0478 PF04551 GcpE protein FN0482 PF01197 Ribosomal protein L31 FN0486 PF13276 HTH-like domain FN0486 PF00665 Integrase core domain FN0486 PF13333 Integrase core domain FN0487 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FN0487 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FN0488 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FN0488 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FN0489 PF01790 Prolipoprotein diacylglyceryl transferase FN0491 PF00842 Alanine racemase, C-terminal domain FN0491 PF01168 Alanine racemase, N-terminal domain FN0495 PF02803 Thiolase, C-terminal domain FN0495 PF00108 Thiolase, N-terminal domain FN0499 PF00593 TonB dependent receptor FN0499 PF07715 TonB-dependent Receptor Plug Domain FN0501 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain FN0501 PF01276 Orn/Lys/Arg decarboxylase, major domain FN0502 PF13580 SIS domain FN0503 PF03466 LysR substrate binding domain FN0503 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FN0504 PF13520 Amino acid permease FN0505 PF07722 Peptidase C26 FN0506 PF00750 tRNA synthetases class I (R) FN0506 PF03485 Arginyl tRNA synthetase N terminal domain FN0506 PF05746 DALR anticodon binding domain FN0508 PF01734 Patatin-like phospholipase FN0511 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FN0511 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FN0512 PF00258 Flavodoxin FN0512 PF00753 Metallo-beta-lactamase superfamily FN0513 PF00258 Flavodoxin FN0515 PF00873 AcrB/AcrD/AcrF family FN0516 PF13533 Biotin-lipoyl like FN0521 PF02677 Epoxyqueuosine reductase QueH FN0522 PF02463 RecF/RecN/SMC N terminal domain FN0524 PF00580 UvrD/REP helicase N-terminal domain FN0524 PF13361 UvrD-like helicase C-terminal domain FN0525 PF00905 Penicillin binding protein transpeptidase domain FN0525 PF00912 Transglycosylase FN0526 PF04055 Radical SAM superfamily FN0527 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FN0527 PF01411 tRNA synthetases class II (A) FN0527 PF02272 DHHA1 domain FN0528 PF00313 'Cold-shock' DNA-binding domain FN0533 PF03601 Conserved hypothetical protein 698 FN0535 PF03641 Possible lysine decarboxylase FN0536 PF02768 DNA polymerase III beta subunit, C-terminal domain FN0536 PF00712 DNA polymerase III beta subunit, N-terminal domain FN0537 PF02660 Glycerol-3-phosphate acyltransferase FN0539 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FN0539 PF14824 Sirohaem biosynthesis protein central FN0539 PF10414 Sirohaem synthase dimerisation region FN0540 PF00202 Aminotransferase class-III FN0541 PF01522 Polysaccharide deacetylase FN0542 PF00535 Glycosyl transferase family 2 FN0544 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FN0547 PF00154 recA bacterial DNA recombination protein FN0548 PF02631 RecX family FN0549 PF00814 Glycoprotease family FN0553 PF00291 Pyridoxal-phosphate dependent enzyme FN0554 PF02447 GntP family permease FN0558 PF05818 Enterobacterial TraT complement resistance protein FN0559 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FN0559 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FN0559 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FN0559 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FN0560 PF04055 Radical SAM superfamily FN0560 PF06969 HemN C-terminal domain FN0561 PF01168 Alanine racemase, N-terminal domain FN0562 PF04472 Cell division protein SepF FN0576 PF00092 von Willebrand factor type A domain FN0578 PF00271 Helicase conserved C-terminal domain FN0578 PF00270 DEAD/DEAH box helicase FN0578 PF16124 RecQ zinc-binding FN0578 PF09382 RQC domain FN0578 PF00570 HRDC domain FN0580 PF00912 Transglycosylase FN0580 PF00905 Penicillin binding protein transpeptidase domain FN0580 PF06832 Penicillin-Binding Protein C-terminus Family FN0581 PF12704 MacB-like periplasmic core domain FN0581 PF02687 FtsX-like permease family FN0582 PF00005 ABC transporter FN0585 PF00072 Response regulator receiver domain FN0585 PF00486 Transcriptional regulatory protein, C terminal FN0586 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FN0586 PF00512 His Kinase A (phospho-acceptor) domain FN0586 PF00672 HAMP domain FN0589 PF01638 HxlR-like helix-turn-helix FN0590 PF01546 Peptidase family M20/M25/M40 FN0590 PF07687 Peptidase dimerisation domain FN0591 PF03806 AbgT putative transporter family FN0592 PF13361 UvrD-like helicase C-terminal domain FN0592 PF00580 UvrD/REP helicase N-terminal domain FN0593 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FN0594 PF07977 FabA-like domain FN0595 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FN0595 PF00132 Bacterial transferase hexapeptide (six repeats) FN0597 PF02684 Lipid-A-disaccharide synthetase FN0598 PF00664 ABC transporter transmembrane region FN0598 PF00005 ABC transporter FN0599 PF01610 Transposase FN0599 PF13683 Integrase core domain FN0603 PF03466 LysR substrate binding domain FN0603 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FN0604 PF00375 Sodium:dicarboxylate symporter family FN0605 PF00155 Aminotransferase class I and II FN0607 PF01966 HD domain FN0608 PF17876 Cold shock domain FN0608 PF08206 Ribonuclease B OB domain FN0608 PF00773 RNB domain FN0608 PF00575 S1 RNA binding domain FN0609 PF01668 SmpB protein FN0611 PF03129 Anticodon binding domain FN0611 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FN0611 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FN0611 PF02824 TGS domain FN0614 PF00664 ABC transporter transmembrane region FN0614 PF04954 Siderophore-interacting protein FN0614 PF00005 ABC transporter FN0614 PF08021 Siderophore-interacting FAD-binding domain FN0615 PF00664 ABC transporter transmembrane region FN0615 PF00005 ABC transporter FN0617 PF00712 DNA polymerase III beta subunit, N-terminal domain FN0617 PF02768 DNA polymerase III beta subunit, C-terminal domain FN0617 PF02767 DNA polymerase III beta subunit, central domain FN0618 PF13416 Bacterial extracellular solute-binding protein FN0619 PF05552 Conserved TM helix FN0619 PF00924 Mechanosensitive ion channel FN0621 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain FN0621 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain FN0624 PF03553 Na+/H+ antiporter family FN0625 PF00155 Aminotransferase class I and II FN0627 PF01380 SIS domain FN0628 PF01380 SIS domain FN0629 PF03613 PTS system mannose/fructose/sorbose family IID component FN0630 PF03609 PTS system sorbose-specific iic component FN0631 PF03830 PTS system sorbose subfamily IIB component FN0634 PF03144 Elongation factor Tu domain 2 FN0634 PF00009 Elongation factor Tu GTP binding domain FN0634 PF00679 Elongation factor G C-terminus FN0635 PF16198 tRNA pseudouridylate synthase B C-terminal domain FN0635 PF01509 TruB family pseudouridylate synthase (N terminal domain) FN0644 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FN0644 PF02602 Uroporphyrinogen-III synthase HemD FN0645 PF03900 Porphobilinogen deaminase, C-terminal domain FN0645 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FN0646 PF01488 Shikimate / quinate 5-dehydrogenase FN0646 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FN0648 PF07969 Amidohydrolase family FN0649 PF07969 Amidohydrolase family FN0650 PF03553 Na+/H+ antiporter family FN0651 PF00849 RNA pseudouridylate synthase FN0652 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FN0652 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FN0654 PF00162 Phosphoglycerate kinase FN0658 PF03180 NLPA lipoprotein FN0659 PF00528 Binding-protein-dependent transport system inner membrane component FN0660 PF09383 NIL domain FN0660 PF00005 ABC transporter FN0662 PF00491 Arginase family FN0664 PF03060 Nitronate monooxygenase FN0667 PF01554 MatE FN0668 PF01297 Zinc-uptake complex component A periplasmic FN0669 PF00005 ABC transporter FN0670 PF00950 ABC 3 transport family FN0671 PF00950 ABC 3 transport family FN0672 PF13635 Domain of unknown function (DUF4143) FN0672 PF13173 AAA domain FN0673 PF04073 Aminoacyl-tRNA editing domain FN0675 PF00118 TCP-1/cpn60 chaperonin family FN0676 PF00166 Chaperonin 10 Kd subunit FN0678 PF00069 Protein kinase domain FN0678 PF03793 PASTA domain FN0679 PF03193 RsgA GTPase FN0679 PF16745 RsgA N-terminal domain FN0680 PF00834 Ribulose-phosphate 3 epimerase family FN0682 PF05670 NFACT protein RNA binding domain FN0684 PF03063 Prismane/CO dehydrogenase family FN0685 PF00474 Sodium:solute symporter family FN0692 PF01207 Dihydrouridine synthase (Dus) FN0693 PF05188 MutS domain II FN0693 PF05192 MutS domain III FN0693 PF01624 MutS domain I FN0693 PF00488 MutS domain V FN0693 PF05190 MutS family domain IV FN0695 PF12399 Branched-chain amino acid ATP-binding cassette transporter FN0695 PF00005 ABC transporter FN0697 PF02272 DHHA1 domain FN0697 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FN0697 PF01411 tRNA synthetases class II (A) FN0698 PF03652 Holliday junction resolvase FN0699 PF07549 SecD/SecF GG Motif FN0699 PF02355 Protein export membrane protein FN0700 PF02355 Protein export membrane protein FN0700 PF07549 SecD/SecF GG Motif FN0701 PF13847 Methyltransferase domain FN0701 PF10119 Predicted methyltransferase regulatory domain FN0703 PF07687 Peptidase dimerisation domain FN0703 PF01546 Peptidase family M20/M25/M40 FN0705 PF01367 5'-3' exonuclease, C-terminal SAM fold FN0705 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FN0705 PF00476 DNA polymerase family A FN0706 PF14527 WhiA LAGLIDADG-like domain FN0706 PF02650 WhiA C-terminal HTH domain FN0706 PF10298 WhiA N-terminal LAGLIDADG-like domain FN0707 PF01687 Riboflavin kinase FN0707 PF06574 FAD synthetase FN0708 PF02616 Segregation and condensation protein ScpA FN0709 PF03023 Lipid II flippase MurJ FN0711 PF04127 DNA / pantothenate metabolism flavoprotein FN0711 PF02441 Flavoprotein FN0714 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FN0717 PF01479 S4 domain FN0717 PF00849 RNA pseudouridylate synthase FN0720 PF01132 Elongation factor P (EF-P) OB domain FN0720 PF09285 Elongation factor P, C-terminal FN0720 PF08207 Elongation factor P (EF-P) KOW-like domain FN0724 PF00258 Flavodoxin FN0725 PF00899 ThiF family FN0729 PF00300 Histidine phosphatase superfamily (branch 1) FN0730 PF00300 Histidine phosphatase superfamily (branch 1) FN0732 PF05636 HIGH Nucleotidyl Transferase FN0733 PF07687 Peptidase dimerisation domain FN0733 PF01546 Peptidase family M20/M25/M40 FN0734 PF04055 Radical SAM superfamily FN0734 PF08497 Radical SAM N-terminal FN0735 PF05658 Head domain of trimeric autotransporter adhesin FN0735 PF03895 YadA-like membrane anchor domain FN0739 PF04961 Formiminotransferase-cyclodeaminase FN0740 PF01979 Amidohydrolase family FN0741 PF02971 Formiminotransferase domain FN0741 PF07837 Formiminotransferase domain, N-terminal subdomain FN0742 PF07308 Protein of unknown function (DUF1456) FN0743 PF06733 DEAD_2 FN0743 PF13307 Helicase C-terminal domain FN0745 PF07698 7TM receptor with intracellular HD hydrolase FN0745 PF07697 7TM-HD extracellular FN0745 PF01966 HD domain FN0746 PF02130 Uncharacterized protein family UPF0054 FN0747 PF00293 NUDIX domain FN0751 PF00710 Asparaginase, N-terminal FN0751 PF17763 Glutaminase/Asparaginase C-terminal domain FN0752 PF00561 alpha/beta hydrolase fold FN0753 PF02637 GatB domain FN0753 PF02934 GatB/GatE catalytic domain FN0754 PF01425 Amidase FN0755 PF02686 Glu-tRNAGln amidotransferase C subunit FN0756 PF00849 RNA pseudouridylate synthase FN0756 PF01479 S4 domain FN0757 PF04079 Segregation and condensation complex subunit ScpB FN0759 PF02545 Maf-like protein FN0761 PF03309 Type III pantothenate kinase FN0766 PF01741 Large-conductance mechanosensitive channel, MscL FN0767 PF01497 Periplasmic binding protein FN0768 PF07715 TonB-dependent Receptor Plug Domain FN0768 PF00593 TonB dependent receptor FN0769 PF01032 FecCD transport family FN0770 PF00005 ABC transporter FN0771 PF04055 Radical SAM superfamily FN0775 PF02127 Aminopeptidase I zinc metalloprotease (M18) FN0776 PF03590 Aspartate-ammonia ligase FN0777 PF03144 Elongation factor Tu domain 2 FN0777 PF00679 Elongation factor G C-terminus FN0777 PF00009 Elongation factor Tu GTP binding domain FN0777 PF06421 GTP-binding protein LepA C-terminus FN0779 PF02492 CobW/HypB/UreG, nucleotide-binding domain FN0779 PF07683 Cobalamin synthesis protein cobW C-terminal domain FN0781 PF06738 Putative threonine/serine exporter FN0783 PF02770 Acyl-CoA dehydrogenase, middle domain FN0783 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FN0783 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FN0784 PF01012 Electron transfer flavoprotein domain FN0785 PF00766 Electron transfer flavoprotein FAD-binding domain FN0785 PF01012 Electron transfer flavoprotein domain FN0787 PF00665 Integrase core domain FN0787 PF13276 HTH-like domain FN0787 PF13333 Integrase core domain FN0789 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 FN0789 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) FN0790 PF00480 ROK family FN0791 PF00221 Aromatic amino acid lyase FN0792 PF01175 Urocanase Rossmann-like domain FN0792 PF17391 Urocanase N-terminal domain FN0792 PF17392 Urocanase C-terminal domain FN0793 PF03616 Sodium/glutamate symporter FN0795 PF08279 HTH domain FN0795 PF00571 CBS domain FN0796 PF02896 PEP-utilising enzyme, TIM barrel domain FN0796 PF00391 PEP-utilising enzyme, mobile domain FN0796 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FN0798 PF06874 Firmicute fructose-1,6-bisphosphatase FN0799 PF00128 Alpha amylase, catalytic domain FN0799 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FN0800 PF00497 Bacterial extracellular solute-binding proteins, family 3 FN0801 PF00005 ABC transporter FN0802 PF00528 Binding-protein-dependent transport system inner membrane component FN0803 PF01641 SelR domain FN0803 PF01625 Peptide methionine sulfoxide reductase FN0803 PF08534 Redoxin FN0804 PF02683 Cytochrome C biogenesis protein transmembrane region FN0806 PF08486 Stage II sporulation protein FN0807 PF02348 Cytidylyltransferase FN0808 PF00300 Histidine phosphatase superfamily (branch 1) FN0809 PF00588 SpoU rRNA Methylase family FN0810 PF01212 Beta-eliminating lyase FN0813 PF08359 YsiA-like protein, C-terminal region FN0813 PF00440 Bacterial regulatory proteins, tetR family FN0814 PF01144 Coenzyme A transferase FN0816 PF01575 MaoC like domain FN0817 PF00005 ABC transporter FN0818 PF00216 Bacterial DNA-binding protein FN0820 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FN0820 PF07992 Pyridine nucleotide-disulphide oxidoreductase FN0822 PF01202 Shikimate kinase FN0823 PF16360 GTP-binding GTPase Middle Region FN0823 PF13167 GTP-binding GTPase N-terminal FN0823 PF01926 50S ribosome-binding GTPase FN0826 PF13533 Biotin-lipoyl like FN0827 PF00005 ABC transporter FN0828 PF02687 FtsX-like permease family FN0828 PF12704 MacB-like periplasmic core domain FN0831 PF07715 TonB-dependent Receptor Plug Domain FN0831 PF00593 TonB dependent receptor FN0837 PF02899 Phage integrase, N-terminal SAM-like domain FN0837 PF00589 Phage integrase family FN0841 PF13333 Integrase core domain FN0841 PF00665 Integrase core domain FN0841 PF13276 HTH-like domain FN0849 PF00155 Aminotransferase class I and II FN0851 PF08241 Methyltransferase domain FN0853 PF00534 Glycosyl transferases group 1 FN0853 PF08323 Starch synthase catalytic domain FN0854 PF00483 Nucleotidyl transferase FN0855 PF00483 Nucleotidyl transferase FN0855 PF00132 Bacterial transferase hexapeptide (six repeats) FN0856 PF02806 Alpha amylase, C-terminal all-beta domain FN0856 PF00128 Alpha amylase, catalytic domain FN0856 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FN0857 PF00343 Carbohydrate phosphorylase FN0858 PF02446 4-alpha-glucanotransferase FN0866 PF01027 Inhibitor of apoptosis-promoting Bax1 FN0867 PF13193 AMP-binding enzyme C-terminal domain FN0867 PF00501 AMP-binding enzyme FN0868 PF01171 PP-loop family FN0870 PF12368 Rhodanase C-terminal FN0870 PF17773 UPF0176 acylphosphatase like domain FN0870 PF00581 Rhodanese-like domain FN0871 PF01761 3-dehydroquinate synthase FN0871 PF02541 Ppx/GppA phosphatase family FN0873 PF01343 Peptidase family S49 FN0874 PF00293 NUDIX domain FN0875 PF08032 RNA 2'-O ribose methyltransferase substrate binding FN0875 PF00588 SpoU rRNA Methylase family FN0878 PF07729 FCD domain FN0878 PF00392 Bacterial regulatory proteins, gntR family FN0880 PF00005 ABC transporter FN0882 PF00005 ABC transporter FN0884 PF01032 FecCD transport family FN0886 PF00593 TonB dependent receptor FN0886 PF07715 TonB-dependent Receptor Plug Domain FN0887 PF01432 Peptidase family M3 FN0887 PF08439 Oligopeptidase F FN0888 PF00860 Permease family FN0900 PF00753 Metallo-beta-lactamase superfamily FN0902 PF01812 5-formyltetrahydrofolate cyclo-ligase family FN0903 PF00571 CBS domain FN0903 PF01380 SIS domain FN0906 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FN0906 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FN0907 PF17827 PrmC N-terminal domain FN0907 PF13847 Methyltransferase domain FN0908 PF04468 PSP1 C-terminal conserved region FN0909 PF04002 RadC-like JAB domain FN0910 PF02277 Phosphoribosyltransferase FN0911 PF00300 Histidine phosphatase superfamily (branch 1) FN0912 PF02654 Cobalamin-5-phosphate synthase FN0913 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase FN0915 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FN0920 PF01435 Peptidase family M48 FN0922 PF01636 Phosphotransferase enzyme family FN0923 PF13091 PLD-like domain FN0923 PF13396 Phospholipase_D-nuclease N-terminal FN0928 PF00814 Glycoprotease family FN0929 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FN0930 PF01467 Cytidylyltransferase-like FN0930 PF00294 pfkB family carbohydrate kinase FN0931 PF00293 NUDIX domain FN0933 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FN0934 PF01264 Chorismate synthase FN0936 PF14102 Capsule biosynthesis CapC FN0937 PF08245 Mur ligase middle domain FN0942 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FN0942 PF00512 His Kinase A (phospho-acceptor) domain FN0942 PF02743 Cache domain FN0943 PF00486 Transcriptional regulatory protein, C terminal FN0943 PF00072 Response regulator receiver domain FN0949 PF13087 AAA domain FN0949 PF13086 AAA domain FN0949 PF13195 Protein of unknown function (DUF4011) FN0950 PF02571 Precorrin-6x reductase CbiJ/CobK FN0951 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FN0951 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FN0952 PF11761 Cobalamin biosynthesis central region FN0952 PF01890 Cobalamin synthesis G C-terminus FN0952 PF11760 Cobalamin synthesis G N-terminal FN0957 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FN0959 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FN0964 PF05175 Methyltransferase small domain FN0965 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FN0965 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FN0967 PF01888 CbiD FN0970 PF02570 Precorrin-8X methylmutase FN0971 PF02661 Fic/DOC family FN0971 PF12728 Helix-turn-helix domain FN0972 PF07685 CobB/CobQ-like glutamine amidotransferase domain FN0973 PF00155 Aminotransferase class I and II FN0975 PF03186 CobD/Cbib protein FN0977 PF07685 CobB/CobQ-like glutamine amidotransferase domain FN0978 PF03553 Na+/H+ antiporter family FN0981 PF02843 Phosphoribosylglycinamide synthetase, C domain FN0981 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FN0981 PF02844 Phosphoribosylglycinamide synthetase, N domain FN0982 PF01808 AICARFT/IMPCHase bienzyme FN0982 PF02142 MGS-like domain FN0985 PF00551 Formyl transferase FN0986 PF00586 AIR synthase related protein, N-terminal domain FN0986 PF02769 AIR synthase related protein, C-terminal domain FN0987 PF00156 Phosphoribosyl transferase domain FN0988 PF01259 SAICAR synthetase FN0989 PF00731 AIR carboxylase FN0990 PF00586 AIR synthase related protein, N-terminal domain FN0990 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FN0990 PF02769 AIR synthase related protein, C-terminal domain FN0991 PF01066 CDP-alcohol phosphatidyltransferase FN0993 PF02386 Cation transport protein FN0996 PF09529 Integral membrane protein (intg_mem_TP0381) FN0998 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FN0999 PF05343 M42 glutamyl aminopeptidase FN1000 PF04055 Radical SAM superfamily FN1000 PF06968 Biotin and Thiamin Synthesis associated domain FN1002 PF00202 Aminotransferase class-III FN1010 PF04472 Cell division protein SepF FN1011 PF02272 DHHA1 domain FN1011 PF01368 DHH family FN1012 PF07475 HPr Serine kinase C-terminal domain FN1012 PF02603 HPr Serine kinase N terminus FN1014 PF08245 Mur ligase middle domain FN1014 PF02875 Mur ligase family, glutamate ligase domain FN1015 PF01048 Phosphorylase superfamily FN1019 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FN1019 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FN1020 PF00378 Enoyl-CoA hydratase/isomerase FN1022 PF00689 Cation transporting ATPase, C-terminus FN1022 PF00690 Cation transporter/ATPase, N-terminus FN1024 PF00216 Bacterial DNA-binding protein FN1025 PF00860 Permease family FN1026 PF01479 S4 domain FN1026 PF00849 RNA pseudouridylate synthase FN1027 PF01098 Cell cycle protein FN1028 PF00692 dUTPase FN1029 PF00675 Insulinase (Peptidase family M16) FN1029 PF05193 Peptidase M16 inactive domain FN1033 PF10672 S-adenosylmethionine-dependent methyltransferase FN1033 PF17785 PUA-like domain FN1034 PF02909 Tetracyclin repressor-like, C-terminal domain FN1034 PF00440 Bacterial regulatory proteins, tetR family FN1039 PF03591 AzlC protein FN1040 PF05437 Branched-chain amino acid transport protein (AzlD) FN1042 PF17783 CvfB-like winged helix domain FN1042 PF13509 S1 domain FN1050 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FN1055 PF00291 Pyridoxal-phosphate dependent enzyme FN1059 PF05525 Branched-chain amino acid transport protein FN1060 PF05406 WGR domain FN1063 PF01546 Peptidase family M20/M25/M40 FN1063 PF07687 Peptidase dimerisation domain FN1066 PF13742 OB-fold nucleic acid binding domain FN1066 PF02601 Exonuclease VII, large subunit FN1068 PF17782 DprA winged helix domain FN1068 PF02481 DNA recombination-mediator protein A FN1069 PF01131 DNA topoisomerase FN1069 PF01751 Toprim domain FN1069 PF01396 Topoisomerase DNA binding C4 zinc finger FN1070 PF01134 Glucose inhibited division protein A FN1071 PF02899 Phage integrase, N-terminal SAM-like domain FN1071 PF00589 Phage integrase family FN1072 PF01926 50S ribosome-binding GTPase FN1074 PF02881 SRP54-type protein, helical bundle domain FN1074 PF00448 SRP54-type protein, GTPase domain FN1080 PF00005 ABC transporter FN1080 PF00664 ABC transporter transmembrane region FN1088 PF07992 Pyridine nucleotide-disulphide oxidoreductase FN1088 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FN1089 PF03668 P-loop ATPase protein family FN1090 PF01541 GIY-YIG catalytic domain FN1090 PF02151 UvrB/uvrC motif FN1090 PF08459 UvrC Helix-hairpin-helix N-terminal FN1091 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain FN1091 PF07228 Stage II sporulation protein E (SpoIIE) FN1092 PF07136 Protein of unknown function (DUF1385) FN1102 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family FN1103 PF17760 UvrA interaction domain FN1103 PF17755 UvrA DNA-binding domain FN1104 PF07499 RuvA, C-terminal domain FN1104 PF01330 RuvA N terminal domain FN1106 PF03313 Serine dehydratase alpha chain FN1106 PF03315 Serine dehydratase beta chain FN1109 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FN1109 PF00005 ABC transporter FN1110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FN1110 PF00005 ABC transporter FN1111 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FN1112 PF12911 N-terminal TM domain of oligopeptide transport permease C FN1112 PF00528 Binding-protein-dependent transport system inner membrane component FN1113 PF00528 Binding-protein-dependent transport system inner membrane component FN1115 PF03824 High-affinity nickel-transport protein FN1116 PF03575 Peptidase family S51 FN1117 PF00829 Ribosomal prokaryotic L21 protein FN1119 PF01016 Ribosomal L27 protein FN1120 PF01293 Phosphoenolpyruvate carboxykinase FN1121 PF08903 Domain of unknown function (DUF1846) FN1122 PF00501 AMP-binding enzyme FN1123 PF00578 AhpC/TSA family FN1124 PF00691 OmpA family FN1124 PF00223 Photosystem I psaA/psaB protein FN1125 PF04011 LemA family FN1128 PF00326 Prolyl oligopeptidase family FN1128 PF07676 WD40-like Beta Propeller Repeat FN1129 PF02463 RecF/RecN/SMC N terminal domain FN1129 PF06470 SMC proteins Flexible Hinge Domain FN1130 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FN1132 PF01467 Cytidylyltransferase-like FN1133 PF01979 Amidohydrolase family FN1134 PF04074 YhcH/YjgK/YiaL FN1136 PF00005 ABC transporter FN1137 PF00528 Binding-protein-dependent transport system inner membrane component FN1139 PF01869 BadF/BadG/BcrA/BcrD ATPase family FN1141 PF01226 Formate/nitrite transporter FN1142 PF04055 Radical SAM superfamily FN1142 PF16199 Radical_SAM C-terminal domain FN1143 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase FN1147 PF03313 Serine dehydratase alpha chain FN1149 PF00580 UvrD/REP helicase N-terminal domain FN1149 PF13361 UvrD-like helicase C-terminal domain FN1151 PF01554 MatE FN1152 PF00155 Aminotransferase class I and II FN1154 PF03631 Virulence factor BrkB FN1155 PF03793 PASTA domain FN1155 PF03717 Penicillin-binding Protein dimerisation domain FN1155 PF00905 Penicillin binding protein transpeptidase domain FN1156 PF18074 Primosomal protein N C-terminal domain FN1156 PF00271 Helicase conserved C-terminal domain FN1156 PF04851 Type III restriction enzyme, res subunit FN1156 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FN1156 PF17764 3′ DNA-binding domain (3′BD) FN1157 PF01327 Polypeptide deformylase FN1159 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded FN1160 PF04434 SWIM zinc finger FN1160 PF00176 SNF2 family N-terminal domain FN1160 PF00271 Helicase conserved C-terminal domain FN1161 PF01177 Asp/Glu/Hydantoin racemase FN1162 PF00753 Metallo-beta-lactamase superfamily FN1163 PF07992 Pyridine nucleotide-disulphide oxidoreductase FN1164 PF00480 ROK family FN1165 PF13407 Periplasmic binding protein domain FN1166 PF00005 ABC transporter FN1167 PF02653 Branched-chain amino acid transport system / permease component FN1169 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FN1169 PF00056 lactate/malate dehydrogenase, NAD binding domain FN1170 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FN1170 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg FN1170 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase FN1170 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II FN1170 PF10371 Domain of unknown function FN1171 PF00871 Acetokinase family FN1172 PF01515 Phosphate acetyl/butaryl transferase FN1176 PF09827 CRISPR associated protein Cas2 FN1177 PF01867 CRISPR associated protein Cas1 FN1185 PF02146 Sir2 family FN1187 PF00497 Bacterial extracellular solute-binding proteins, family 3 FN1199 PF11799 impB/mucB/samB family C-terminal domain FN1199 PF00817 impB/mucB/samB family FN1202 PF02540 NAD synthase FN1203 PF01926 50S ribosome-binding GTPase FN1204 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FN1205 PF17820 PDZ domain FN1205 PF03572 Peptidase family S41 FN1205 PF01471 Putative peptidoglycan binding domain FN1206 PF01728 FtsJ-like methyltransferase FN1206 PF01479 S4 domain FN1208 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FN1208 PF02779 Transketolase, pyrimidine binding domain FN1208 PF02780 Transketolase, C-terminal domain FN1209 PF01985 CRS1 / YhbY (CRM) domain FN1210 PF00753 Metallo-beta-lactamase superfamily FN1210 PF17770 Ribonuclease J C-terminal domain FN1210 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain FN1211 PF00905 Penicillin binding protein transpeptidase domain FN1211 PF03717 Penicillin-binding Protein dimerisation domain FN1214 PF04055 Radical SAM superfamily FN1214 PF01938 TRAM domain FN1214 PF00919 Uncharacterized protein family UPF0004 FN1215 PF04452 RNA methyltransferase FN1216 PF02082 Transcriptional regulator FN1217 PF05496 Holliday junction DNA helicase RuvB P-loop domain FN1217 PF05491 RuvB C-terminal winged helix domain FN1217 PF17864 RuvB AAA lid domain FN1218 PF04286 Protein of unknown function (DUF445) FN1220 PF00291 Pyridoxal-phosphate dependent enzyme FN1224 PF00793 DAHP synthetase I family FN1225 PF08245 Mur ligase middle domain FN1225 PF01225 Mur ligase family, catalytic domain FN1225 PF02875 Mur ligase family, glutamate ligase domain FN1226 PF03167 Uracil DNA glycosylase superfamily FN1231 PF00571 CBS domain FN1231 PF00478 IMP dehydrogenase / GMP reductase domain FN1232 PF01638 HxlR-like helix-turn-helix FN1233 PF02525 Flavodoxin-like fold FN1237 PF12804 MobA-like NTP transferase domain FN1243 PF02709 N-terminal domain of galactosyltransferase FN1243 PF00535 Glycosyl transferase family 2 FN1244 PF01522 Polysaccharide deacetylase FN1246 PF04991 LicD family FN1247 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FN1249 PF08279 HTH domain FN1249 PF13280 WYL domain FN1250 PF00860 Permease family FN1251 PF03239 Iron permease FTR1 family FN1252 PF10634 Fe2+ transport protein FN1254 PF00881 Nitroreductase family FN1255 PF13344 Haloacid dehalogenase-like hydrolase FN1256 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FN1258 PF03480 Bacterial extracellular solute-binding protein, family 7 FN1259 PF03167 Uracil DNA glycosylase superfamily FN1260 PF00672 HAMP domain FN1260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FN1260 PF00512 His Kinase A (phospho-acceptor) domain FN1261 PF00486 Transcriptional regulatory protein, C terminal FN1261 PF00072 Response regulator receiver domain FN1263 PF06180 Cobalt chelatase (CbiK) FN1265 PF13488 Glycine zipper FN1265 PF00691 OmpA family FN1266 PF00483 Nucleotidyl transferase FN1268 PF00133 tRNA synthetases class I (I, L, M and V) FN1268 PF08264 Anticodon-binding domain of tRNA FN1268 PF09334 tRNA synthetases class I (M) FN1268 PF01588 Putative tRNA binding domain FN1270 PF02575 YbaB/EbfC DNA-binding family FN1271 PF01343 Peptidase family S49 FN1273 PF02321 Outer membrane efflux protein FN1275 PF00873 AcrB/AcrD/AcrF family FN1277 PF07687 Peptidase dimerisation domain FN1277 PF01546 Peptidase family M20/M25/M40 FN1280 PF01223 DNA/RNA non-specific endonuclease FN1282 PF01196 Ribosomal protein L17 FN1283 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FN1283 PF01000 RNA polymerase Rpb3/RpoA insert domain FN1283 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FN1284 PF01479 S4 domain FN1284 PF00163 Ribosomal protein S4/S9 N-terminal domain FN1285 PF00411 Ribosomal protein S11 FN1286 PF00416 Ribosomal protein S13/S18 FN1287 PF01176 Translation initiation factor 1A / IF-1 FN1295 PF00583 Acetyltransferase (GNAT) family FN1297 PF00557 Metallopeptidase family M24 FN1301 PF00005 ABC transporter FN1301 PF12848 ABC transporter FN1303 PF01923 Cobalamin adenosyltransferase FN1304 PF00436 Single-strand binding protein family FN1306 PF12147 Putative methyltransferase FN1306 PF12146 Serine aminopeptidase, S33 FN1307 PF01066 CDP-alcohol phosphatidyltransferase FN1311 PF02472 Biopolymer transport protein ExbD/TolR FN1312 PF01618 MotA/TolQ/ExbB proton channel family FN1313 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FN1316 PF01784 NIF3 (NGG1p interacting factor 3) FN1317 PF04545 Sigma-70, region 4 FN1317 PF04539 Sigma-70 region 3 FN1317 PF04542 Sigma-70 region 2 FN1317 PF00140 Sigma-70 factor, region 1.2 FN1318 PF00140 Sigma-70 factor, region 1.2 FN1318 PF04545 Sigma-70, region 4 FN1318 PF03979 Sigma-70 factor, region 1.1 FN1318 PF04539 Sigma-70 region 3 FN1318 PF04542 Sigma-70 region 2 FN1319 PF01807 CHC2 zinc finger FN1319 PF08275 DNA primase catalytic core, N-terminal domain FN1319 PF10410 DnaB-helicase binding domain of primase FN1321 PF00072 Response regulator receiver domain FN1321 PF02954 Bacterial regulatory protein, Fis family FN1321 PF00158 Sigma-54 interaction domain FN1322 PF00595 PDZ domain FN1322 PF02163 Peptidase family M50 FN1324 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FN1324 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FN1324 PF13288 DXP reductoisomerase C-terminal domain FN1326 PF01255 Putative undecaprenyl diphosphate synthase FN1327 PF00348 Polyprenyl synthetase FN1328 PF02609 Exonuclease VII small subunit FN1330 PF02547 Queuosine biosynthesis protein FN1331 PF17827 PrmC N-terminal domain FN1331 PF05175 Methyltransferase small domain FN1332 PF00472 RF-1 domain FN1332 PF03462 PCRF domain FN1334 PF01520 N-acetylmuramoyl-L-alanine amidase FN1334 PF11741 AMIN domain FN1340 PF00749 tRNA synthetases class I (E and Q), catalytic domain FN1341 PF03462 PCRF domain FN1341 PF00472 RF-1 domain FN1342 PF01648 4'-phosphopantetheinyl transferase superfamily FN1343 PF01026 TatD related DNase FN1348 PF00005 ABC transporter FN1352 PF00005 ABC transporter FN1353 PF00005 ABC transporter FN1353 PF12704 MacB-like periplasmic core domain FN1353 PF02687 FtsX-like permease family FN1354 PF02687 FtsX-like permease family FN1354 PF12704 MacB-like periplasmic core domain FN1359 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FN1360 PF00528 Binding-protein-dependent transport system inner membrane component FN1361 PF12911 N-terminal TM domain of oligopeptide transport permease C FN1361 PF00528 Binding-protein-dependent transport system inner membrane component FN1362 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FN1362 PF00005 ABC transporter FN1363 PF00005 ABC transporter FN1363 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FN1364 PF01783 Ribosomal L32p protein family FN1365 PF01926 50S ribosome-binding GTPase FN1365 PF06071 Protein of unknown function (DUF933) FN1366 PF00121 Triosephosphate isomerase FN1370 PF02021 Uncharacterised protein family UPF0102 FN1371 PF01351 Ribonuclease HII FN1372 PF01479 S4 domain FN1372 PF00849 RNA pseudouridylate synthase FN1373 PF04073 Aminoacyl-tRNA editing domain FN1375 PF03390 2-hydroxycarboxylate transporter family FN1376 PF00364 Biotin-requiring enzyme FN1376 PF00682 HMGL-like FN1376 PF02436 Conserved carboxylase domain FN1377 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase FN1378 PF06857 Malonate decarboxylase delta subunit (MdcD) FN1379 PF03328 HpcH/HpaI aldolase/citrate lyase family FN1380 PF04223 Citrate lyase, alpha subunit (CitF) FN1382 PF13173 AAA domain FN1382 PF13635 Domain of unknown function (DUF4143) FN1383 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FN1383 PF07733 Bacterial DNA polymerase III alpha NTPase domain FN1383 PF01336 OB-fold nucleic acid binding domain FN1383 PF14579 Helix-hairpin-helix motif FN1383 PF02811 PHP domain FN1384 PF00583 Acetyltransferase (GNAT) family FN1386 PF00176 SNF2 family N-terminal domain FN1386 PF12419 SNF2 Helicase protein FN1386 PF00271 Helicase conserved C-terminal domain FN1392 PF00886 Ribosomal protein S16 FN1393 PF02881 SRP54-type protein, helical bundle domain FN1393 PF00448 SRP54-type protein, GTPase domain FN1393 PF02978 Signal peptide binding domain FN1394 PF04297 Putative helix-turn-helix protein, YlxM / p13 like FN1397 PF04960 Glutaminase FN1398 PF01235 Sodium:alanine symporter family FN1400 PF03704 Bacterial transcriptional activator domain FN1400 PF00486 Transcriptional regulatory protein, C terminal FN1401 PF17392 Urocanase C-terminal domain FN1401 PF17391 Urocanase N-terminal domain FN1401 PF01175 Urocanase Rossmann-like domain FN1402 PF07670 Nucleoside recognition FN1403 PF03553 Na+/H+ antiporter family FN1403 PF13726 Na+-H+ antiporter family FN1404 PF01979 Amidohydrolase family FN1406 PF00221 Aromatic amino acid lyase FN1407 PF02971 Formiminotransferase domain FN1407 PF07837 Formiminotransferase domain, N-terminal subdomain FN1408 PF01546 Peptidase family M20/M25/M40 FN1408 PF07687 Peptidase dimerisation domain FN1411 PF00291 Pyridoxal-phosphate dependent enzyme FN1411 PF13291 ACT domain FN1412 PF01636 Phosphotransferase enzyme family FN1413 PF01008 Initiation factor 2 subunit family FN1415 PF00465 Iron-containing alcohol dehydrogenase FN1416 PF00155 Aminotransferase class I and II FN1417 PF00596 Class II Aldolase and Adducin N-terminal domain FN1418 PF00155 Aminotransferase class I and II FN1419 PF01053 Cys/Met metabolism PLP-dependent enzyme FN1421 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II FN1421 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase FN1421 PF10371 Domain of unknown function FN1421 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg FN1421 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FN1422 PF03553 Na+/H+ antiporter family FN1423 PF00301 Rubredoxin FN1423 PF00753 Metallo-beta-lactamase superfamily FN1423 PF00258 Flavodoxin FN1424 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FN1424 PF02770 Acyl-CoA dehydrogenase, middle domain FN1424 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FN1426 PF12951 Passenger-associated-transport-repeat FN1426 PF03797 Autotransporter beta-domain FN1426 PF00082 Subtilase family FN1427 PF02567 Phenazine biosynthesis-like protein FN1428 PF00005 ABC transporter FN1429 PF12399 Branched-chain amino acid ATP-binding cassette transporter FN1429 PF00005 ABC transporter FN1430 PF02653 Branched-chain amino acid transport system / permease component FN1430 PF11862 Domain of unknown function (DUF3382) FN1431 PF02653 Branched-chain amino acid transport system / permease component FN1432 PF13458 Periplasmic binding protein FN1433 PF00106 short chain dehydrogenase FN1436 PF00664 ABC transporter transmembrane region FN1436 PF00005 ABC transporter FN1437 PF00830 Ribosomal L28 family FN1439 PF08220 DeoR-like helix-turn-helix domain FN1439 PF00455 DeoR C terminal sensor domain FN1440 PF00294 pfkB family carbohydrate kinase FN1441 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FN1441 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FN1442 PF13276 HTH-like domain FN1442 PF00665 Integrase core domain FN1442 PF13333 Integrase core domain FN1444 PF00958 GMP synthase C terminal domain FN1444 PF02540 NAD synthase FN1444 PF00117 Glutamine amidotransferase class-I FN1445 PF13195 Protein of unknown function (DUF4011) FN1445 PF13087 AAA domain FN1445 PF13086 AAA domain FN1447 PF00665 Integrase core domain FN1447 PF13276 HTH-like domain FN1447 PF13333 Integrase core domain FN1448 PF17761 DUF1016 N-terminal domain FN1448 PF06250 YhcG PDDEXK nuclease domain FN1450 PF02080 TrkA-C domain FN1450 PF06826 Predicted Permease Membrane Region FN1451 PF00091 Tubulin/FtsZ family, GTPase domain FN1451 PF12327 FtsZ family, C-terminal domain FN1452 PF02491 SHS2 domain inserted in FTSA FN1454 PF07478 D-ala D-ala ligase C-terminus FN1454 PF01820 D-ala D-ala ligase N-terminus FN1455 PF01565 FAD binding domain FN1455 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FN1456 PF01225 Mur ligase family, catalytic domain FN1456 PF02875 Mur ligase family, glutamate ligase domain FN1456 PF08245 Mur ligase middle domain FN1457 PF04101 Glycosyltransferase family 28 C-terminal domain FN1457 PF03033 Glycosyltransferase family 28 N-terminal domain FN1458 PF08245 Mur ligase middle domain FN1459 PF00953 Glycosyl transferase family 4 FN1459 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 FN1461 PF08245 Mur ligase middle domain FN1461 PF02875 Mur ligase family, glutamate ligase domain FN1461 PF01225 Mur ligase family, catalytic domain FN1462 PF00155 Aminotransferase class I and II FN1462 PF00392 Bacterial regulatory proteins, gntR family FN1463 PF01680 SOR/SNZ family FN1464 PF02780 Transketolase, C-terminal domain FN1464 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FN1464 PF02779 Transketolase, pyrimidine binding domain FN1470 PF01344 Kelch motif FN1471 PF00356 Bacterial regulatory proteins, lacI family FN1472 PF03480 Bacterial extracellular solute-binding protein, family 7 FN1473 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FN1473 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FN1474 PF00480 ROK family FN1475 PF00701 Dihydrodipicolinate synthetase family FN1476 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase FN1477 PF00892 EamA-like transporter family FN1480 PF03448 MgtE intracellular N domain FN1480 PF00571 CBS domain FN1480 PF01769 Divalent cation transporter FN1481 PF01702 Queuine tRNA-ribosyltransferase FN1482 PF13291 ACT domain FN1482 PF02824 TGS domain FN1482 PF04607 Region found in RelA / SpoT proteins FN1483 PF00156 Phosphoribosyl transferase domain FN1486 PF00571 CBS domain FN1486 PF03471 Transporter associated domain FN1486 PF01595 Cyclin M transmembrane N-terminal domain FN1487 PF13291 ACT domain FN1488 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FN1488 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FN1489 PF00551 Formyl transferase FN1489 PF02911 Formyl transferase, C-terminal domain FN1490 PF03477 ATP cone domain FN1491 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FN1491 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FN1492 PF11967 Recombination protein O N terminal FN1492 PF02565 Recombination protein O C terminal FN1494 PF04085 rod shape-determining protein MreC FN1496 PF04085 rod shape-determining protein MreC FN1497 PF07690 Major Facilitator Superfamily FN1498 PF00892 EamA-like transporter family FN1499 PF05658 Head domain of trimeric autotransporter adhesin FN1499 PF03895 YadA-like membrane anchor domain FN1500 PF00005 ABC transporter FN1501 PF00005 ABC transporter FN1502 PF00528 Binding-protein-dependent transport system inner membrane component FN1503 PF00528 Binding-protein-dependent transport system inner membrane component FN1504 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FN1505 PF00885 6,7-dimethyl-8-ribityllumazine synthase FN1506 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FN1506 PF01872 RibD C-terminal domain FN1507 PF00677 Lumazine binding domain FN1508 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FN1508 PF00925 GTP cyclohydrolase II FN1517 PF13603 Leucyl-tRNA synthetase, Domain 2 FN1517 PF08264 Anticodon-binding domain of tRNA FN1517 PF00133 tRNA synthetases class I (I, L, M and V) FN1517 PF09334 tRNA synthetases class I (M) FN1518 PF08281 Sigma-70, region 4 FN1518 PF04542 Sigma-70 region 2 FN1519 PF00588 SpoU rRNA Methylase family FN1519 PF08032 RNA 2'-O ribose methyltransferase substrate binding FN1520 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FN1521 PF00528 Binding-protein-dependent transport system inner membrane component FN1522 PF12911 N-terminal TM domain of oligopeptide transport permease C FN1522 PF00528 Binding-protein-dependent transport system inner membrane component FN1523 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FN1524 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FN1524 PF00005 ABC transporter FN1525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FN1525 PF00005 ABC transporter FN1530 PF13333 Integrase core domain FN1530 PF00665 Integrase core domain FN1530 PF13276 HTH-like domain FN1531 PF04172 LrgB-like family FN1532 PF03788 LrgA family FN1533 PF01012 Electron transfer flavoprotein domain FN1533 PF00766 Electron transfer flavoprotein FAD-binding domain FN1534 PF01012 Electron transfer flavoprotein domain FN1535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FN1535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FN1535 PF02770 Acyl-CoA dehydrogenase, middle domain FN1536 PF02913 FAD linked oxidases, C-terminal domain FN1536 PF01565 FAD binding domain FN1537 PF02374 Anion-transporting ATPase FN1537 PF17886 HSP20-like domain found in ArsA FN1538 PF02374 Anion-transporting ATPase FN1538 PF17886 HSP20-like domain found in ArsA FN1539 PF02589 LUD domain FN1540 PF02589 LUD domain FN1540 PF13183 4Fe-4S dicluster domain FN1540 PF11870 Domain of unknown function (DUF3390) FN1541 PF00348 Polyprenyl synthetase FN1543 PF01209 ubiE/COQ5 methyltransferase family FN1544 PF01494 FAD binding domain FN1546 PF00679 Elongation factor G C-terminus FN1546 PF03144 Elongation factor Tu domain 2 FN1546 PF00009 Elongation factor Tu GTP binding domain FN1546 PF03764 Elongation factor G, domain IV FN1546 PF14492 Elongation Factor G, domain II FN1547 PF02378 Phosphotransferase system, EIIC FN1547 PF00367 phosphotransferase system, EIIB FN1549 PF01145 SPFH domain / Band 7 family FN1555 PF03144 Elongation factor Tu domain 2 FN1555 PF00009 Elongation factor Tu GTP binding domain FN1555 PF03143 Elongation factor Tu C-terminal domain FN1556 PF03144 Elongation factor Tu domain 2 FN1556 PF00009 Elongation factor Tu GTP binding domain FN1556 PF03764 Elongation factor G, domain IV FN1556 PF14492 Elongation Factor G, domain II FN1556 PF00679 Elongation factor G C-terminus FN1557 PF00177 Ribosomal protein S7p/S5e FN1558 PF00164 Ribosomal protein S12/S23 FN1559 PF00999 Sodium/hydrogen exchanger family FN1559 PF02080 TrkA-C domain FN1559 PF03471 Transporter associated domain FN1561 PF02578 Multi-copper polyphenol oxidoreductase laccase FN1562 PF00793 DAHP synthetase I family FN1562 PF18152 DAHP synthase ferredoxin-like domain FN1575 PF01541 GIY-YIG catalytic domain FN1576 PF09115 DNA polymerase III, delta subunit, C terminal FN1578 PF00636 Ribonuclease III domain FN1579 PF09190 DALR domain FN1579 PF01406 tRNA synthetases class I (C) catalytic domain FN1580 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FN1581 PF01713 Smr domain FN1581 PF00488 MutS domain V FN1586 PF13378 Enolase C-terminal domain-like FN1586 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FN1589 PF00717 Peptidase S24-like FN1589 PF01726 LexA DNA binding domain FN1591 PF00037 4Fe-4S binding domain FN1591 PF13187 4Fe-4S dicluster domain FN1591 PF04060 Putative Fe-S cluster FN1592 PF02508 Rnf-Nqr subunit, membrane protein FN1593 PF02508 Rnf-Nqr subunit, membrane protein FN1594 PF04205 FMN-binding domain FN1595 PF03116 NQR2, RnfD, RnfE family FN1596 PF13237 4Fe-4S dicluster domain FN1596 PF13375 RnfC Barrel sandwich hybrid domain FN1596 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FN1596 PF10531 SLBB domain FN1597 PF01195 Peptidyl-tRNA hydrolase FN1600 PF01416 tRNA pseudouridine synthase FN1602 PF04463 Protein of unknown function (DUF523) FN1605 PF00709 Adenylosuccinate synthetase FN1606 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FN1606 PF02390 Putative methyltransferase FN1607 PF02224 Cytidylate kinase FN1609 PF13277 YmdB-like protein FN1610 PF01430 Hsp33 protein FN1612 PF04055 Radical SAM superfamily FN1613 PF00437 Type II/IV secretion system protein FN1614 PF01078 Magnesium chelatase, subunit ChlI FN1614 PF13335 Magnesium chelatase, subunit ChlI C-terminal FN1615 PF02659 Putative manganese efflux pump FN1616 PF01029 NusB family FN1620 PF00318 Ribosomal protein S2 FN1621 PF00889 Elongation factor TS FN1622 PF00696 Amino acid kinase family FN1623 PF01765 Ribosome recycling factor FN1624 PF00344 SecY translocase FN1625 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FN1626 PF00327 Ribosomal protein L30p/L7e FN1627 PF03719 Ribosomal protein S5, C-terminal domain FN1627 PF00333 Ribosomal protein S5, N-terminal domain FN1628 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FN1629 PF00347 Ribosomal protein L6 FN1630 PF00410 Ribosomal protein S8 FN1631 PF00253 Ribosomal protein S14p/S29e FN1632 PF00281 Ribosomal protein L5 FN1632 PF00673 ribosomal L5P family C-terminus FN1633 PF00467 KOW motif FN1633 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FN1634 PF00467 KOW motif FN1634 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FN1635 PF00238 Ribosomal protein L14p/L23e FN1636 PF00366 Ribosomal protein S17 FN1637 PF00831 Ribosomal L29 protein FN1638 PF00252 Ribosomal protein L16p/L10e FN1639 PF00189 Ribosomal protein S3, C-terminal domain FN1639 PF07650 KH domain FN1640 PF00237 Ribosomal protein L22p/L17e FN1641 PF00203 Ribosomal protein S19 FN1642 PF03947 Ribosomal Proteins L2, C-terminal domain FN1642 PF00181 Ribosomal Proteins L2, RNA binding domain FN1643 PF00276 Ribosomal protein L23 FN1644 PF00573 Ribosomal protein L4/L1 family FN1645 PF00297 Ribosomal protein L3 FN1646 PF00338 Ribosomal protein S10p/S20e FN1648 PF00005 ABC transporter FN1648 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FN1649 PF00005 ABC transporter FN1650 PF00528 Binding-protein-dependent transport system inner membrane component FN1650 PF12911 N-terminal TM domain of oligopeptide transport permease C FN1651 PF00528 Binding-protein-dependent transport system inner membrane component FN1652 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FN1653 PF01554 MatE FN1656 PF01084 Ribosomal protein S18 FN1657 PF01250 Ribosomal protein S6 FN1658 PF03129 Anticodon binding domain FN1658 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FN1658 PF04073 Aminoacyl-tRNA editing domain FN1660 PF00271 Helicase conserved C-terminal domain FN1660 PF00270 DEAD/DEAH box helicase FN1660 PF17191 RecG wedge domain FN1661 PF01709 Transcriptional regulator FN1662 PF17191 RecG wedge domain FN1662 PF13749 Putative ATP-dependent DNA helicase recG C-terminal FN1662 PF00270 DEAD/DEAH box helicase FN1667 PF16363 GDP-mannose 4,6 dehydratase FN1672 PF03062 MBOAT, membrane-bound O-acyltransferase family FN1675 PF01797 Transposase IS200 like FN1677 PF01797 Transposase IS200 like FN1680 PF13333 Integrase core domain FN1680 PF00665 Integrase core domain FN1680 PF13276 HTH-like domain FN1684 PF08666 SAF domain FN1684 PF03102 NeuB family FN1685 PF16363 GDP-mannose 4,6 dehydratase FN1686 PF02348 Cytidylyltransferase FN1689 PF02719 Polysaccharide biosynthesis protein FN1692 PF00535 Glycosyl transferase family 2 FN1695 PF02397 Bacterial sugar transferase FN1696 PF02719 Polysaccharide biosynthesis protein FN1698 PF04321 RmlD substrate binding domain FN1702 PF02673 Bacitracin resistance protein BacA FN1703 PF01370 NAD dependent epimerase/dehydratase family FN1704 PF01734 Patatin-like phospholipase FN1706 PF01925 Sulfite exporter TauE/SafE FN1707 PF01263 Aldose 1-epimerase FN1708 PF00575 S1 RNA binding domain FN1708 PF03725 3' exoribonuclease family, domain 2 FN1708 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FN1708 PF00013 KH domain FN1708 PF01138 3' exoribonuclease family, domain 1 FN1709 PF01066 CDP-alcohol phosphatidyltransferase FN1711 PF01795 MraW methylase family FN1713 PF05958 tRNA (Uracil-5-)-methyltransferase FN1715 PF13635 Domain of unknown function (DUF4143) FN1715 PF13173 AAA domain FN1717 PF00533 BRCA1 C Terminus (BRCT) domain FN1717 PF03120 NAD-dependent DNA ligase OB-fold domain FN1717 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FN1717 PF12826 Helix-hairpin-helix motif FN1717 PF01653 NAD-dependent DNA ligase adenylation domain FN1718 PF02810 SEC-C motif FN1718 PF01043 SecA preprotein cross-linking domain FN1718 PF07516 SecA Wing and Scaffold domain FN1718 PF07517 SecA DEAD-like domain FN1722 PF02527 rRNA small subunit methyltransferase G FN1723 PF01134 Glucose inhibited division protein A FN1723 PF13932 GidA associated domain FN1724 PF02254 TrkA-N domain FN1724 PF02080 TrkA-C domain FN1725 PF02386 Cation transport protein FN1726 PF01554 MatE FN1727 PF00654 Voltage gated chloride channel FN1728 PF01470 Pyroglutamyl peptidase FN1730 PF00425 chorismate binding enzyme FN1730 PF04715 Anthranilate synthase component I, N terminal region FN1731 PF00117 Glutamine amidotransferase class-I FN1733 PF01813 ATP synthase subunit D FN1734 PF02874 ATP synthase alpha/beta family, beta-barrel domain FN1734 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FN1737 PF01990 ATP synthase (F/14-kDa) subunit FN1738 PF01992 ATP synthase (C/AC39) subunit FN1739 PF01991 ATP synthase (E/31 kDa) subunit FN1740 PF00137 ATP synthase subunit C FN1741 PF01496 V-type ATPase 116kDa subunit family FN1745 PF01053 Cys/Met metabolism PLP-dependent enzyme FN1746 PF01053 Cys/Met metabolism PLP-dependent enzyme FN1747 PF01235 Sodium:alanine symporter family FN1748 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II FN1748 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FN1748 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg FN1748 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase FN1748 PF10371 Domain of unknown function FN1748 PF12838 4Fe-4S dicluster domain FN1749 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase FN1749 PF10371 Domain of unknown function FN1749 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FN1749 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg FN1749 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II FN1749 PF12838 4Fe-4S dicluster domain FN1752 PF02581 Thiamine monophosphate synthase FN1754 PF05690 Thiazole biosynthesis protein ThiG FN1755 PF00899 ThiF family FN1757 PF01964 Radical SAM ThiC family FN1758 PF02581 Thiamine monophosphate synthase FN1759 PF08543 Phosphomethylpyrimidine kinase FN1762 PF03883 Peroxide stress protein YaaA FN1764 PF00113 Enolase, C-terminal TIM barrel domain FN1764 PF03952 Enolase, N-terminal domain FN1765 PF02887 Pyruvate kinase, alpha/beta domain FN1765 PF00224 Pyruvate kinase, barrel domain FN1781 PF00575 S1 RNA binding domain FN1781 PF02401 LytB protein FN1782 PF00381 PTS HPr component phosphorylation site FN1786 PF01467 Cytidylyltransferase-like FN1786 PF00294 pfkB family carbohydrate kinase FN1788 PF02542 YgbB family FN1789 PF01554 MatE FN1790 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP FN1791 PF00293 NUDIX domain FN1793 PF02896 PEP-utilising enzyme, TIM barrel domain FN1793 PF00391 PEP-utilising enzyme, mobile domain FN1793 PF05524 PEP-utilising enzyme, N-terminal FN1794 PF00381 PTS HPr component phosphorylation site FN1797 PF00005 ABC transporter FN1797 PF08402 TOBE domain FN1798 PF00528 Binding-protein-dependent transport system inner membrane component FN1799 PF00528 Binding-protein-dependent transport system inner membrane component FN1800 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FN1801 PF03616 Sodium/glutamate symporter FN1803 PF00440 Bacterial regulatory proteins, tetR family FN1804 PF07687 Peptidase dimerisation domain FN1804 PF01546 Peptidase family M20/M25/M40 FN1810 PF00950 ABC 3 transport family FN1811 PF00005 ABC transporter FN1813 PF01297 Zinc-uptake complex component A periplasmic FN1817 PF05594 Haemagluttinin repeat FN1817 PF15526 Novel toxin 21 FN1817 PF05860 haemagglutination activity domain FN1817 PF13332 Hemagglutinin repeat FN1817 PF05594 Haemagluttinin repeat FN1817 PF04829 Pre-toxin domain with VENN motif FN1817 PF05860 haemagglutination activity domain FN1817 PF04829 Pre-toxin domain with VENN motif FN1817 PF15526 Novel toxin 21 FN1817 PF13332 Hemagglutinin repeat FN1818 PF08479 POTRA domain, ShlB-type FN1818 PF17287 POTRA domain FN1818 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB FN1819 PF00005 ABC transporter FN1819 PF00664 ABC transporter transmembrane region FN1820 PF00664 ABC transporter transmembrane region FN1820 PF00005 ABC transporter FN1824 PF02833 DHHA2 domain FN1824 PF00571 CBS domain FN1824 PF01368 DHH family FN1824 PF07085 DRTGG domain FN1826 PF16325 Peptidase family U32 C-terminal domain FN1826 PF01136 Peptidase family U32 FN1827 PF00772 DnaB-like helicase N terminal domain FN1827 PF03796 DnaB-like helicase C terminal domain FN1828 PF01281 Ribosomal protein L9, N-terminal domain FN1828 PF03948 Ribosomal protein L9, C-terminal domain FN1830 PF12169 DNA polymerase III subunits gamma and tau domain III FN1831 PF00072 Response regulator receiver domain FN1831 PF00158 Sigma-54 interaction domain FN1831 PF02954 Bacterial regulatory protein, Fis family FN1833 PF02472 Biopolymer transport protein ExbD/TolR FN1834 PF01618 MotA/TolQ/ExbB proton channel family FN1838 PF00230 Major intrinsic protein FN1839 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FN1839 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FN1840 PF02733 Dak1 domain FN1841 PF02734 DAK2 domain FN1842 PF00381 PTS HPr component phosphorylation site FN1842 PF00391 PEP-utilising enzyme, mobile domain FN1842 PF05524 PEP-utilising enzyme, N-terminal FN1842 PF03610 PTS system fructose IIA component FN1844 PF00106 short chain dehydrogenase FN1847 PF01370 NAD dependent epimerase/dehydratase family FN1850 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FN1850 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FN1851 PF01138 3' exoribonuclease family, domain 1 FN1851 PF03725 3' exoribonuclease family, domain 2 FN1853 PF02310 B12 binding domain FN1854 PF13941 MutL protein FN1855 PF06368 Methylaspartate mutase E chain (MutE) FN1856 PF01144 Coenzyme A transferase FN1857 PF01144 Coenzyme A transferase FN1858 PF02667 Short chain fatty acid transporter FN1860 PF03553 Na+/H+ antiporter family FN1862 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase FN1862 PF02310 B12 binding domain FN1863 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit FN1864 PF01624 MutS domain I FN1864 PF05190 MutS family domain IV FN1864 PF00488 MutS domain V FN1864 PF05192 MutS domain III FN1864 PF05188 MutS domain II FN1866 PF12544 Lysine-2,3-aminomutase FN1866 PF04055 Radical SAM superfamily FN1868 PF05853 beta-keto acid cleavage enzyme FN1869 PF03061 Thioesterase superfamily FN1873 PF01230 HIT domain FN1874 PF02502 Ribose/Galactose Isomerase FN1875 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FN1876 PF00117 Glutamine amidotransferase class-I FN1876 PF06418 CTP synthase N-terminus FN1877 PF00860 Permease family FN1879 PF01649 Ribosomal protein S20 FN1885 PF03006 Haemolysin-III related FN1891 PF03009 Glycerophosphoryl diester phosphodiesterase family FN1894 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FN1898 PF00005 ABC transporter FN1903 PF07992 Pyridine nucleotide-disulphide oxidoreductase FN1903 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FN1904 PF01638 HxlR-like helix-turn-helix FN1906 PF00883 Cytosol aminopeptidase family, catalytic domain FN1906 PF02789 Cytosol aminopeptidase family, N-terminal domain FN1907 PF01205 Uncharacterized protein family UPF0029 FN1907 PF09186 Domain of unknown function (DUF1949) FN1908 PF03009 Glycerophosphoryl diester phosphodiesterase family FN1909 PF00132 Bacterial transferase hexapeptide (six repeats) FN1909 PF14602 Hexapeptide repeat of succinyl-transferase FN1909 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FN1911 PF01103 Surface antigen FN1911 PF07244 Surface antigen variable number repeat FN1913 PF01966 HD domain FN1913 PF00013 KH domain FN1913 PF12072 Domain of unknown function (DUF3552) FN1918 PF01926 50S ribosome-binding GTPase FN1918 PF01018 GTP1/OBG FN1918 PF09269 Domain of unknown function (DUF1967) FN1919 PF08241 Methyltransferase domain FN1923 PF02086 D12 class N6 adenine-specific DNA methyltransferase FN1924 PF03600 Citrate transporter FN1925 PF03600 Citrate transporter FN1926 PF02896 PEP-utilising enzyme, TIM barrel domain FN1926 PF00381 PTS HPr component phosphorylation site FN1926 PF00391 PEP-utilising enzyme, mobile domain FN1926 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FN1926 PF05524 PEP-utilising enzyme, N-terminal FN1927 PF13684 Dihydroxyacetone kinase family FN1927 PF02734 DAK2 domain FN1928 PF07883 Cupin domain FN1929 PF02464 Competence-damaged protein FN1929 PF00994 Probable molybdopterin binding domain FN1929 PF18146 Damage-inducible protein CinA KH domain FN1930 PF04608 Phosphatidylglycerophosphatase A FN1931 PF01136 Peptidase family U32 FN1931 PF16325 Peptidase family U32 C-terminal domain FN1932 PF01121 Dephospho-CoA kinase FN1935 PF02086 D12 class N6 adenine-specific DNA methyltransferase FN1940 PF01554 MatE FN1941 PF10431 C-terminal, D2-small domain, of ClpB protein FN1941 PF07724 AAA domain (Cdc48 subfamily) FN1941 PF17871 AAA lid domain FN1941 PF00004 ATPase family associated with various cellular activities (AAA) FN1941 PF02861 Clp amino terminal domain, pathogenicity island component FN1942 PF13309 HTH domain FN1942 PF08348 YheO-like PAS domain FN1943 PF01212 Beta-eliminating lyase FN1944 PF00209 Sodium:neurotransmitter symporter family FN1949 PF05195 Aminopeptidase P, N-terminal domain FN1949 PF00557 Metallopeptidase family M24 FN1950 PF12951 Passenger-associated-transport-repeat FN1950 PF03797 Autotransporter beta-domain FN1950 PF00082 Subtilase family FN1951 PF01661 Macro domain FN1953 PF01235 Sodium:alanine symporter family FN1968 PF00005 ABC transporter FN1969 PF01032 FecCD transport family FN1971 PF00593 TonB dependent receptor FN1971 PF07715 TonB-dependent Receptor Plug Domain FN1973 PF01042 Endoribonuclease L-PSP FN1975 PF00271 Helicase conserved C-terminal domain FN1975 PF00270 DEAD/DEAH box helicase FN1976 PF02618 YceG-like family FN1977 PF01171 PP-loop family FN1977 PF11734 TilS substrate C-terminal domain FN1978 PF00004 ATPase family associated with various cellular activities (AAA) FN1978 PF17862 AAA+ lid domain FN1978 PF06480 FtsH Extracellular FN1978 PF01434 Peptidase family M41 FN1979 PF00312 Ribosomal protein S15 FN1983 PF00578 AhpC/TSA family FN1984 PF07992 Pyridine nucleotide-disulphide oxidoreductase FN1985 PF06123 Inner membrane protein CreD FN1987 PF07729 FCD domain FN1987 PF00392 Bacterial regulatory proteins, gntR family FN1988 PF01212 Beta-eliminating lyase FN1989 PF00209 Sodium:neurotransmitter symporter family FN1991 PF00483 Nucleotidyl transferase FN1991 PF00132 Bacterial transferase hexapeptide (six repeats) FN1991 PF14602 Hexapeptide repeat of succinyl-transferase FN1992 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FN1992 PF14572 Phosphoribosyl synthetase-associated domain FN1993 PF01300 Telomere recombination FN1996 PF02592 Putative vitamin uptake transporter FN2003 PF02632 BioY family FN2004 PF00005 ABC transporter FN2005 PF00005 ABC transporter FN2006 PF02361 Cobalt transport protein FN2007 PF00255 Glutathione peroxidase FN2008 PF00005 ABC transporter FN2009 PF00528 Binding-protein-dependent transport system inner membrane component FN2011 PF08264 Anticodon-binding domain of tRNA FN2011 PF00133 tRNA synthetases class I (I, L, M and V) FN2011 PF10458 Valyl tRNA synthetase tRNA binding arm FN2013 PF01926 50S ribosome-binding GTPase FN2014 PF05362 Lon protease (S16) C-terminal proteolytic domain FN2014 PF02190 ATP-dependent protease La (LON) substrate-binding domain FN2014 PF00004 ATPase family associated with various cellular activities (AAA) FN2015 PF06689 ClpX C4-type zinc finger FN2015 PF07724 AAA domain (Cdc48 subfamily) FN2015 PF10431 C-terminal, D2-small domain, of ClpB protein FN2016 PF00574 Clp protease FN2017 PF05697 Bacterial trigger factor protein (TF) FN2017 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FN2017 PF05698 Bacterial trigger factor protein (TF) C-terminus FN2018 PF02272 DHHA1 domain FN2018 PF17768 RecJ OB domain FN2018 PF01368 DHH family FN2018 PF10141 Single-strand DNA-specific exonuclease, C terminal domain FN2019 PF02033 Ribosome-binding factor A FN2020 PF00009 Elongation factor Tu GTP binding domain FN2020 PF11987 Translation-initiation factor 2 FN2020 PF04760 Translation initiation factor IF-2, N-terminal region FN2022 PF00575 S1 RNA binding domain FN2022 PF08529 NusA N-terminal domain FN2022 PF13184 NusA-like KH domain FN2023 PF17384 RimP C-terminal SH3 domain FN2023 PF02576 RimP N-terminal domain FN2029 PF01757 Acyltransferase family FN2030 PF03030 Inorganic H+ pyrophosphatase FN2033 PF00625 Guanylate kinase FN2034 PF03755 YicC-like family, N-terminal region FN2034 PF08340 Domain of unknown function (DUF1732) FN2035 PF00623 RNA polymerase Rpb1, domain 2 FN2035 PF05000 RNA polymerase Rpb1, domain 4 FN2035 PF04983 RNA polymerase Rpb1, domain 3 FN2035 PF04997 RNA polymerase Rpb1, domain 1 FN2035 PF04998 RNA polymerase Rpb1, domain 5 FN2036 PF10385 RNA polymerase beta subunit external 1 domain FN2036 PF04565 RNA polymerase Rpb2, domain 3 FN2036 PF04561 RNA polymerase Rpb2, domain 2 FN2036 PF00562 RNA polymerase Rpb2, domain 6 FN2036 PF04560 RNA polymerase Rpb2, domain 7 FN2036 PF04563 RNA polymerase beta subunit FN2037 PF16320 Ribosomal protein L7/L12 dimerisation domain FN2037 PF00542 Ribosomal protein L7/L12 C-terminal domain FN2038 PF00466 Ribosomal protein L10 FN2039 PF00687 Ribosomal protein L1p/L10e family FN2040 PF00298 Ribosomal protein L11, RNA binding domain FN2040 PF03946 Ribosomal protein L11, N-terminal domain FN2041 PF02357 Transcription termination factor nusG FN2044 PF00471 Ribosomal protein L33 FN2045 PF01475 Ferric uptake regulator family FN2048 PF00691 OmpA family FN2053 PF00375 Sodium:dicarboxylate symporter family FN2054 PF00342 Phosphoglucose isomerase FN2059 PF00691 OmpA family FN2067 PF00578 AhpC/TSA family FN2068 PF01966 HD domain FN2069 PF01235 Sodium:alanine symporter family FN2070 PF07685 CobB/CobQ-like glutamine amidotransferase domain FN2073 PF00156 Phosphoribosyl transferase domain FN2074 PF01555 DNA methylase FN2076 PF01381 Helix-turn-helix FN2077 PF03553 Na+/H+ antiporter family FN2079 PF09383 NIL domain FN2079 PF00005 ABC transporter FN2080 PF02653 Branched-chain amino acid transport system / permease component FN2082 PF01268 Formate--tetrahydrofolate ligase FN2086 PF03958 Bacterial type II/III secretion system short domain FN2086 PF00263 Bacterial type II and III secretion system protein FN2093 PF00114 Pilin (bacterial filament) FN2093 PF07963 Prokaryotic N-terminal methylation motif FN2094 PF00482 Type II secretion system (T2SS), protein F FN2095 PF00437 Type II/IV secretion system protein FN2098 PF10609 NUBPL iron-transfer P-loop NTPase FN2099 PF04304 Protein of unknown function (DUF454) FN2101 PF00892 EamA-like transporter family FN2102 PF12848 ABC transporter FN2102 PF00005 ABC transporter FN2102 PF16326 ABC transporter C-terminal domain FN2103 PF03401 Tripartite tricarboxylate transporter family receptor FN2105 PF01970 Tripartite tricarboxylate transporter TctA family FN2106 PF03606 C4-dicarboxylate anaerobic carrier FN2107 PF00288 GHMP kinases N terminal domain FN2107 PF08544 GHMP kinases C terminal FN2107 PF10509 Galactokinase galactose-binding signature FN2108 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain FN2108 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain FN2109 PF16363 GDP-mannose 4,6 dehydratase FN2122 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FN2122 PF01588 Putative tRNA binding domain FN2122 PF03147 Ferredoxin-fold anticodon binding domain FN2122 PF03484 tRNA synthetase B5 domain FN2122 PF03483 B3/4 domain FN2123 PF01409 tRNA synthetases class II core domain (F) FN2123 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FN2125 PF03989 DNA gyrase C-terminal domain, beta-propeller FN2125 PF00521 DNA gyrase/topoisomerase IV, subunit A FN2126 PF01751 Toprim domain FN2126 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FN2126 PF00986 DNA gyrase B subunit, carboxyl terminus FN2126 PF00204 DNA gyrase B FN2128 PF02463 RecF/RecN/SMC N terminal domain